Citrus Sinensis ID: 015348

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKKRE
Secondary Structure (PSIPRED)
ccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHEEEEEEHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccHHHHHHHHHHHccccEEEHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHcHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHEcccccccHHHcccc
Coil and Loop (DISEMBL)
mavnfflkdslnvdpstlqllqnsanlpmvgkplygVVSDAVyisgqhrvpYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMakqpmtsskkaqsssgelQSFVWMSSSMGGVLGNLLVGfaidrfsppsmFLFFGLLVVLQFFITIAVRESAlklpksqsnvgIRAQLSELSAalrkpeimYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYnsglksvspRKLISAIQAMMAVFMISDVLFVKGVyremgvpdSLYVLIFSSLLEVMFFFKILPFSVYIaqvcppgcegsIMAFVMSAVALAFIVSGYLGVALASytgvtgddfsglPLALIIQAVCTILPlywsyfmpdgvkskttkkre
Flexible Loop (DISEMBL)
mavnfflkdslnvdPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQpmtsskkaqsssGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESAlklpksqsnvgIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSyfmpdgvkskttkkre
Low Complexity Region (SEG)
MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWlaiailsqssisiFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMflffgllvvlqffITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKKRE
Disordered region (IsUnstruct)
****FFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALV**********************SFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKL******VGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMP************
Disordered Region (DISOPRED)
MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMA*************SGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFM*************
Disordered Region (DISEMBL)
MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMA****************LQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGV*********
Disordered Region (DISPRO)
MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQP**********SGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDG**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKKRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q9XIQ7	442	Probable folate-biopterin	yes	no	0.985	0.909	0.629	1e-140
O22780	538	Probable folate-biopterin	no	no	0.977	0.741	0.386	6e-75
F4I5Q2	542	Probable folate-biopterin	no	no	0.973	0.732	0.410	7e-70
Q8RWQ5	491	Probable folate-biopterin	no	no	0.953	0.792	0.286	8e-38
Q9SKZ5	560	Folate-biopterin transpor	no	no	0.897	0.653	0.273	6e-31
Q55721	494	Folate-biopterin transpor	N/A	no	0.958	0.791	0.281	6e-27
Q5FV41	499	Probable folate-biopterin	no	no	0.950	0.777	0.244	1e-23
Q9LEV7	503	Probable folate-biopterin	no	no	0.941	0.763	0.253	2e-22
F4KIL8	492	Probable folate-biopterin	no	no	0.943	0.782	0.241	5e-21
Q9SQN2	497	Probable folate-biopterin	no	no	0.965	0.792	0.215	4e-20

>sp|Q9XIQ7|FBT7_ARATH Probable folate-biopterin transporter 7 OS=Arabidopsis thaliana GN=At1g64890 PE=2 SV=1

 Score =  498 bits (1283), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 257/408 (62%), Positives = 321/408 (78%), Gaps = 6/408 (1%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           +  NFFL + L V+PS LQLLQNSANLPMV KP+YGVVSD+VY  GQHR+PYIA+GA LQ
Sbjct: 38  LGANFFLTEQLRVNPSVLQLLQNSANLPMVAKPIYGVVSDSVYFFGQHRIPYIAVGALLQ 97

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
           A+SWLAIA LS+S++SI  +S++LLLSNLGAS+ EVANDA+VAE  KQ     K +++ S
Sbjct: 98  AISWLAIAFLSRSNVSILALSIYLLLSNLGASLVEVANDAIVAESGKQ-----KTSETQS 152

Query: 121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLP 180
           GEL SFVWM SS+GG+LGNLL G AI  FS  S FL FG+L +LQF +TI +RE +L LP
Sbjct: 153 GELPSFVWMVSSLGGILGNLLGGIAIKTFSAQSTFLVFGILALLQFLVTINIREKSLNLP 212

Query: 181 KSQSNVG-IRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSV 239
           ++ S  G IR  LS+LS  LRKPEI YS+AW A S +++PVLTGTMFFYQT+ LKI +S+
Sbjct: 213 ENPSPAGGIRKHLSDLSHVLRKPEISYSIAWIAVSTAVVPVLTGTMFFYQTKFLKIDASL 272

Query: 240 LGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP 299
           LGISKVFGQ AMLLWG  YN  LK++ PRKL++AIQ  +A F+ISD+LFVKGVYR++GV 
Sbjct: 273 LGISKVFGQIAMLLWGFAYNRWLKAMRPRKLLTAIQVTIAFFVISDLLFVKGVYRDLGVS 332

Query: 300 DSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVA 359
           DS+YVL FS  LE +F+FKILPF+V +A++CPPGCEGS+MAFVMSA+ALAFIVSGYLG+ 
Sbjct: 333 DSVYVLFFSGFLETLFYFKILPFTVLMARLCPPGCEGSLMAFVMSAIALAFIVSGYLGIV 392

Query: 360 LASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKKR 407
           LAS+ GVT DDFSG    L I+A C  +PL  + ++ D  ++K   K+
Sbjct: 393 LASFVGVTEDDFSGFTRGLAIEACCVGIPLILTSWIYDEAETKEKSKK 440

Could mediate folate transport.
Arabidopsis thaliana (taxid: 3702)

>sp|O22780|FBT9_ARATH Probable folate-biopterin transporter 9, chloroplastic OS=Arabidopsis thaliana GN=At2g33280 PE=3 SV=2

 Score =  281 bits (719), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 164/424 (38%), Positives = 267/424 (62%), Gaps = 25/424 (5%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           +A+NF +   LN+ PSTLQL+Q +A+LPMV KPLYGV+SD +YI G  RVPYI++G  LQ
Sbjct: 103 LALNFHMAHCLNLKPSTLQLVQYTASLPMVAKPLYGVLSDVLYIGGARRVPYISVGVLLQ 162

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
            ++W ++AI   +   + ++  F+LLSNLGASI EV+ DALVAE   +   +        
Sbjct: 163 GLAWGSLAIFPGAREVLPSLMAFILLSNLGASITEVSQDALVAEYGLRYQING------- 215

Query: 121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLP 180
             LQS+  M+S++GG+LGNLL G+ + +  P  +FL F  L+ LQ  ++++ +E ++ LP
Sbjct: 216 --LQSYALMASAVGGILGNLLGGYCLLKTPPRILFLAFTALLSLQLIVSLSSKEESVNLP 273

Query: 181 KS-------QSNVGI-RAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQN 232
           +         S +GI + Q  +L   ++  EI   + W  +S +++P+L+G++F YQTQ 
Sbjct: 274 RIGEVTPEISSVLGIVKKQFLDLKGIVQVDEISQPLIWIVSSIALVPLLSGSVFCYQTQV 333

Query: 233 LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGV 292
           L +  SV+G+SKV GQ  +L   V+Y+   K +  R LI  +Q + A  ++ D + VK +
Sbjct: 334 LNLDPSVIGMSKVIGQLMLLCLTVVYDRYWKKLPMRALIHIVQLLYAFSLLFDYILVKQI 393

Query: 293 YREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIV 352
               G+ ++ +VL FSS+ E++  FKILPFSV +A +CP GCEGSI +F+ S + L+ +V
Sbjct: 394 NLAFGISNTAFVLCFSSVAEILAQFKILPFSVLLANMCPGGCEGSITSFLASTLCLSSVV 453

Query: 353 SGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMP--------DGVKSKTT 404
           SG+ GV +A+  G+T  ++S LP  ++IQ++  ++PL++ +++P        +G ++ + 
Sbjct: 454 SGFTGVGMANMIGITSKNYSNLPAGILIQSLAALVPLWFIHYVPMLEPGFEREGKRAMSK 513

Query: 405 KKRE 408
           K R 
Sbjct: 514 KSRR 517

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|F4I5Q2|FBT8_ARATH Probable folate-biopterin transporter 8, chloroplastic OS=Arabidopsis thaliana GN=At1g04570 PE=2 SV=1

 Score =  264 bits (675), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 169/412 (41%), Positives = 257/412 (62%), Gaps = 15/412 (3%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           +A+NF +  SL + PSTLQL+Q S +LPMV KPLYGV+SD +YI    RVPYIAIG FLQ
Sbjct: 106 LALNFHMVHSLALQPSTLQLVQYSCSLPMVAKPLYGVLSDVLYIGSGRRVPYIAIGVFLQ 165

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
            ++W ++ I   +   + ++   +LLSNLGASI EVA DALVAE   +   +        
Sbjct: 166 VLAWGSMGIFQGAREVLPSLVACVLLSNLGASITEVAKDALVAEYGLRYRING------- 218

Query: 121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLP 180
             LQS+  M+S+ GGVLGNLL G+ +    P   FL F  L+ LQ  ++++ +E +  LP
Sbjct: 219 --LQSYALMASAAGGVLGNLLGGYLLLTTPPKISFLVFSALLSLQLVVSLSSKEESFGLP 276

Query: 181 K--SQSNV--GIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIR 236
           +    S+V   ++ Q+S L  A++  EI   + W   S +++P+L+G++F YQTQ L + 
Sbjct: 277 RIAETSSVLESVKKQISNLKEAIQADEISQPLIWAVVSIAMVPLLSGSVFCYQTQVLNLD 336

Query: 237 SSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREM 296
            SV+G+SKV GQ  +L   V+Y+  LK++  R LI  IQ +  + ++ D + VK +    
Sbjct: 337 PSVIGMSKVIGQLMLLCLTVVYDRYLKTLPMRPLIHIIQLLYGLSILLDYILVKQINLGF 396

Query: 297 GVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYL 356
           G+ + +YVL FSSL E++  FKILPF+V +A +CP GCEGS+ +F+ S + L+ IVS +L
Sbjct: 397 GISNEVYVLCFSSLAEILAQFKILPFAVRLASMCPQGCEGSVTSFLASTLCLSQIVSAFL 456

Query: 357 GVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMP--DGVKSKTTKK 406
           GV LA+  G+T  ++S L   ++IQ++  + PL + + +P  + V  K  K+
Sbjct: 457 GVGLANLIGITSSNYSNLSSGILIQSLAALAPLCFMHLVPMSEPVIEKEGKR 508

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWQ5|FBT4_ARATH Probable folate-biopterin transporter 4 OS=Arabidopsis thaliana GN=At5g54860 PE=2 SV=1

 Score =  158 bits (399), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 214/453 (47%), Gaps = 64/453 (14%)

Query: 2   AVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQA 61
           AV++ LKD L + PS  Q + + A  P   KPLYG++SD + I G+ R PY+ I   L  
Sbjct: 36  AVSYQLKDRLQLSPSASQFVFSVAFFPWSIKPLYGIISDCIPIGGKKRTPYLVISTVLSL 95

Query: 62  VSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSG 121
           V WL + + S S  S   + +FL + NLG+++A+V  DA++AE  +      +KA S +G
Sbjct: 96  VPWLVLGLDSTSRSSSLYLMIFLTVQNLGSAMADVVIDAMIAEAVRL-----EKA-SFAG 149

Query: 122 ELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALK--- 178
           +LQS  W + ++GGV G+LL G+A+      ++FL F +L  LQ      V ES      
Sbjct: 150 DLQSVSWFAMAVGGVCGSLLGGYALSNLKIETIFLLFTVLPALQLLSCALVEESPANNEP 209

Query: 179 LPK---------------------SQSNVGIRAQLSEL--------SAALRKPEIMYSVA 209
           LP+                     S+SN   R    +         S   +K     +  
Sbjct: 210 LPELLDSNEFEEKSLTSNDNYPDTSKSNTRRRKGQKKGKKGDSNGKSETQKKQSKSLASQ 269

Query: 210 WF----AASYSI-----IPVLTGTMFFYQTQNLKI----------RSSVLGISKVF-GQA 249
           WF    AA++ +      P++   M ++   ++ +          ++ VL +   F G A
Sbjct: 270 WFQSLKAATFGLGRAFKQPIILRPMAWFFIAHITVPNLSTVMFYYQTEVLQLDAAFLGTA 329

Query: 250 AMLLW------GVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLY 303
            ++ W        IYN  L+ ++ RK +      ++V ++ D++ V       GV D   
Sbjct: 330 RVVGWLGLMFGTFIYNRYLQDMTLRKSLLFAHIGLSVTILLDMVLVSRANVGYGVSDKTM 389

Query: 304 VLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY 363
           VL  S+L + +   K +PF +   ++CPPG EG++ A  MS   L   V  ++G  LAS 
Sbjct: 390 VLFGSALGDAINQLKFMPFLILSGRLCPPGIEGTLFALFMSINNLGNTVGSFMGAGLASL 449

Query: 364 TGVTGDDFSGLPLALIIQAVCTILPLYWSYFMP 396
            G++   F  + + L IQ  CT +P+ + + +P
Sbjct: 450 LGISSGSFDNMFMGLAIQVFCTYIPVLFLFLIP 482

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKZ5|FBT1_ARATH Folate-biopterin transporter 1, chloroplastic OS=Arabidopsis thaliana GN=At2g32040 PE=2 SV=2

 Score =  135 bits (340), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 189/395 (47%), Gaps = 29/395 (7%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           +AV+F+LKD L++DP+   ++   ++LP + KPLYG +SD+V + G  R  Y+ +   L 
Sbjct: 145 LAVSFYLKDDLHLDPAETAVITGLSSLPWLVKPLYGFISDSVPLFGYRRRSYLVLSGLLG 204

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
           A SW  +A    S    ++ +  +LL +L  + ++V  D++V E A+       ++QS S
Sbjct: 205 AFSWSLMAGFVDSK---YSAAFCILLGSLSVAFSDVVVDSMVVERAR------GESQSVS 255

Query: 121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLP 180
           G LQS  W SS+ GG++ +   G  ++ +    +F    LL ++   + + V E  +  P
Sbjct: 256 GSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGVTALLPLITSAVAVLVNEQRVVRP 315

Query: 181 KSQSNVGI-----------RAQLSELSAALRKPEI----MYSVAWFAASYSIIPVLTGTM 225
            S     I           +  + +L  A+++P +    ++   W A  +S        M
Sbjct: 316 ASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPNVFLPTLFIFLWQATPHS-----DSAM 370

Query: 226 FFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISD 285
           F++ T  L      LG  K+    A LL   +YN  LK+V  RK+            ++ 
Sbjct: 371 FYFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPLRKIFLVTTIFGTGLGMTQ 430

Query: 286 VLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSA 345
           V+ V G  R++G+ D  + +  S +L V+     +P  V  A++CP G E ++ A +MS 
Sbjct: 431 VILVSGFNRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAARLCPEGMEATLFATLMSI 490

Query: 346 VALAFIVSGYLGVALASYTGVTGDDFSGLPLALII 380
                ++ G +G  L    G+T D F  L   +I+
Sbjct: 491 SNGGSVLGGLMGAGLTQAFGITRDSFGNLSTLIIL 525

Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55721|FBT_SYNY3 Folate-biopterin transporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0642 PE=1 SV=1

 Score =  122 bits (305), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 199/412 (48%), Gaps = 21/412 (5%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           +AV+FFLKD L + P+ +  L      P + KP+ G++SD V + G  R  Y+ +   + 
Sbjct: 54  LAVSFFLKDELGLSPAAMGALIGLGAAPWILKPVLGLMSDTVPLFGYRRRSYLWLSGLMG 113

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
           +  WL  A    S        L LL ++L  +I +V  D+LV E A+      +++ +  
Sbjct: 114 SAGWLLFAAWVSSGTQ---AGLVLLFTSLSVAIGDVIVDSLVVERAQ------RESLAQV 164

Query: 121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLF---FGLLVVLQFFITIAVRESAL 177
           G LQS  W ++++GG++     G  ++ FS  ++F     F LL V   F+ I+   +A 
Sbjct: 165 GSLQSLTWGAAAVGGIITAYASGALLEWFSTRTVFAITAIFPLLTVGAAFL-ISEVSTAE 223

Query: 178 KLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRS 237
           +  K Q     +AQ+  +  A+R+  I+     F   +   P      F++ T  L    
Sbjct: 224 EEEKPQP----KAQIKLVWQAVRQKTILLPTL-FIFFWQATPSAESAFFYFTTNELGFEP 278

Query: 238 SVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMG 297
             LG  ++    A L+   +Y   LK++  R ++     + ++  ++ ++ +    R MG
Sbjct: 279 KFLGRVRLVTSVAGLIGVGLYQRFLKTLPFRVIMGWSTVISSLLGLTTLILITHANRAMG 338

Query: 298 VPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLG 357
           + D  + L  S +L V      +P  V  A++CPPG E ++ A +MS + LA ++S  +G
Sbjct: 339 IDDHWFSLGDSIILTVTGQIAFMPVLVLAARLCPPGIEATLFALLMSVMNLAGVLSFEVG 398

Query: 358 VALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDG---VKSKTTKK 406
             L  + GVT   F  L L +II  + T+LPL +   +P G   VK KT K+
Sbjct: 399 SLLTHWLGVTETQFDNLALLVIITNLSTLLPLPFLGLLPAGDPQVKDKTEKE 450

Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q5FV41|FBT2_ARATH Probable folate-biopterin transporter 2 OS=Arabidopsis thaliana GN=At5g25050 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 188/409 (45%), Gaps = 21/409 (5%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           +A  +++KD   V PS  Q L     +P + KPL+G+++D + I G HR PY  +   L 
Sbjct: 66  VATEYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRPYFILAGVLG 125

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
            VS L I++   S++ ++    ++ +S+   +IA+V  DA  A        +S K  S +
Sbjct: 126 VVSLLFISL--HSNLHLYLALFWMTISSAAMAIADVTIDACTA-------YNSIKHPSLA 176

Query: 121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLP 180
            ++QS   +SSS+G +LG  + G  +       +F        L   + I   E  +   
Sbjct: 177 SDMQSLCSLSSSIGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSVVGIVFSEPHVP-- 234

Query: 181 KSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTG-----TMFFYQTQNLK- 234
              S   +  + ++   A+ +  +  S  W  + Y  I +  G      +F++ T +   
Sbjct: 235 -GFSYKQVNQKFTDAGKAMWR-TMKCSDVWRPSLYMYISLTLGLNIHEGLFYWFTDSKDG 292

Query: 235 --IRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGV 292
                  +G     G    +L   +Y   LK    R L    Q + A+  + D++ V  +
Sbjct: 293 PLFAQETVGFILSIGSIGSILAATLYQLVLKDHPFRGLCLWTQLLFALSGMLDLILVFRL 352

Query: 293 YREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIV 352
             + G+PD L++++   + +++   K +P  V  +++CP G EG+  A +MS      + 
Sbjct: 353 NLKFGLPDYLFIVVDEIVSQMIGRLKWMPLLVLTSKLCPHGIEGTFFALLMSIDNAGLMT 412

Query: 353 SGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKS 401
           S +LG  +     VT  +F  L LA++++ V  +LPL + + +P G ++
Sbjct: 413 SSWLGGIMLHVLKVTRTEFGNLWLAVLVRNVMRLLPLCFLFLVPKGDQN 461

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LEV7|FBT6_ARATH Probable folate-biopterin transporter 6 OS=Arabidopsis thaliana GN=At5g10820 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 188/402 (46%), Gaps = 18/402 (4%)

Query: 4   NFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVS 63
           +++ KD   V PS +QL      +P V +P++G+ +D   I G  R PY  +   L  VS
Sbjct: 81  DYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDVFPIKGYKRKPYFVVSGVLGLVS 140

Query: 64  WLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGEL 123
            +AI +L +   ++  +S  L +S    +IA+V  DA +A       T+S   +S + ++
Sbjct: 141 AIAIVVLGKLPAAL-ALSCLLGVSA-AMAIADVVIDACIA-------TNSINIRSLAPDI 191

Query: 124 QSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGL----LVVLQFFITIAVRESALKL 179
           QS   + SS G ++G    G  + +  P             +V+L FFI    R S +  
Sbjct: 192 QSLCMVCSSAGALVGYATSGVFVHQLGPQGALGVLAFSPATIVILGFFI-YEKRSSTVPT 250

Query: 180 PKSQSNV-GIRAQLSELSAALRKPEIMYSVAWFAASYSI-IPVLTGTMFFYQ--TQNLKI 235
            K++ +  G+   +  +   ++ PE+     +   S ++ I    G  ++Y   T     
Sbjct: 251 QKTKKDTDGLGVAVKGMCKTVKYPEVWKPSLYMFISLALNISTHEGHFYWYTDPTAGPAF 310

Query: 236 RSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYRE 295
               +GI    G  A +   +IY+  LK  S R ++   Q +     + D++F+K     
Sbjct: 311 SQEFVGIIYAVGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGMLDLVFIKRWNLT 370

Query: 296 MGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGY 355
           +G+PDSL+V+   S  +++   + +P  V   ++CP G EG+  AF+M   +   + S +
Sbjct: 371 LGIPDSLFVITEESFTKMISKIRWIPMVVLSTRLCPLGIEGTFFAFLMCIDSFGQLASKW 430

Query: 356 LGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPD 397
            G  +    GVT  DF  L L ++I+ +  ++ + + + +PD
Sbjct: 431 GGGFVLHAFGVTRHDFGNLWLVILIRNILRLVTVCFVFLVPD 472

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|F4KIL8|FBT5_ARATH Probable folate-biopterin transporter 5 OS=Arabidopsis thaliana GN=At5g25040 PE=2 SV=2

 Score =  102 bits (254), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 188/410 (45%), Gaps = 25/410 (6%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLP-MVGKPLYGVVSDAVYISGQHRVPYIAIGAFL 59
           +A ++++KD   V PS  Q L     +  ++ KPL+G+++D + I G HR PY  +   +
Sbjct: 66  VATDYYMKDVQKVQPSQYQALSAITRISWIIFKPLFGILTDVLPIFGFHRRPYFILAGVI 125

Query: 60  QAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSS 119
             VS L I++  QS++ ++    ++ +S+   +IA+V  DA           +S K  S 
Sbjct: 126 GVVSLLFISL--QSNLHLYLALFWMTISSAAMAIADVTIDACTT-------YNSNKHPSL 176

Query: 120 SGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKL 179
           + ++QS   +S S+G +LG  + G  +       +F   GLL     F  ++V       
Sbjct: 177 ASDMQSLCSLSYSIGELLGFFMSGILVHLVGSKGVF---GLLTFT--FALVSVVGVLFSE 231

Query: 180 PKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGT-----MFFYQTQNLK 234
           P+       +   +    A+ +  I  S  W  + Y  I    G      +F++ T +  
Sbjct: 232 PRVHG-FSFKQNFTNAMKAMWRT-IKCSDVWQPSLYMFITRALGLDIKEGLFYWFTDSKD 289

Query: 235 ---IRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKG 291
                   +G     G    +L  ++YN  LK    RKL    Q + A+  + D++ V  
Sbjct: 290 GPLFAQETVGFILSIGSIGSILGVLLYNLRLKDHPFRKLFLWTQLLFALSGMFDLILVLR 349

Query: 292 VYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFI 351
           +  + G+PD L++++   + +++     +   V   ++CP G EG+  A +MS      +
Sbjct: 350 LNLKFGLPDYLFIVVDGIVSKMIIRLTWMVIFVLNTKLCPHGIEGTFFALLMSIDNAGLM 409

Query: 352 VSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKS 401
            S +LG  +     VT  +F  L LA++++ V  +LP+ + + +P G ++
Sbjct: 410 TSSWLGGKMLHVLKVTRTEFGNLWLAVLVRNVMRLLPICFLFLVPQGDQN 459

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQN2|FBT3_ARATH Probable folate-biopterin transporter 3 OS=Arabidopsis thaliana GN=At1g79710 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 187/408 (45%), Gaps = 14/408 (3%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           ++  ++ KD   + PS  Q+      +P + KPL+G+++D V + G  R PY  +  FL 
Sbjct: 70  VSTQYYFKDEQKIQPSQAQIYVGLIQIPWIIKPLWGLLTDVVPVLGYRRRPYFILAGFLA 129

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
            +S + + + +   +++    L  +  + G +IA+V  DA V +        S    + +
Sbjct: 130 MISMMVLWLHTNLHLALALSCL--VAGSAGVAIADVTIDACVTQ-------CSISHPTLA 180

Query: 121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALK-L 179
            ++QS   + SS+G ++G  L G  +       ++   G+   L   + + ++ES  + L
Sbjct: 181 ADMQSLCGLCSSIGSLVGFSLSGVLVHLVGSKGVYGLLGVTAGLLVVVGMVLKESPSRSL 240

Query: 180 PKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLK---IR 236
            +   N       S +    +  E+     +   S ++   +   MF++ T +       
Sbjct: 241 GRKHVNDKFLDAGSAIWKTFQYGEVWRPCLFMLLSAAVSLHIHEGMFYWYTDSKDGPSFS 300

Query: 237 SSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREM 296
              +G    FG    L+  ++Y + LK+   R ++    ++  +    D++ V  +  ++
Sbjct: 301 KEAVGSIMSFGAIGSLVGILLYQNFLKNFPFRNVVFWALSLSVLSGFLDLILVLRINLKL 360

Query: 297 GVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYL 356
           G+PD  ++++   +  ++   K LP  V  +++CP G EG+  A +MS   +  +VS + 
Sbjct: 361 GLPDYFFIVVDEFVSHMISRIKWLPLLVLSSKLCPAGMEGTFFALLMSIEHIGHLVSSWG 420

Query: 357 GVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTT 404
           G  L     VT   F  L L ++I+++  ++P+   + +P+ V S +T
Sbjct: 421 GGVLLHALKVTRTQFDNLWLVIVIRSLLRVIPIGLVFLIPN-VDSNST 467

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
255566088	444	transporter, putative [Ricinus communis]	1.0	0.918	0.782	1e-169
388510362	435	unknown [Lotus japonicus]	0.990	0.928	0.781	1e-165
225454605	440	PREDICTED: uncharacterized protein LOC10	0.990	0.918	0.753	1e-164
356558095	437	PREDICTED: uncharacterized protein LOC10	0.990	0.924	0.754	1e-163
147765697	440	hypothetical protein VITISV_024388 [Viti	0.990	0.918	0.751	1e-163
356533171	437	PREDICTED: uncharacterized protein LOC10	0.990	0.924	0.744	1e-162
224146101	433	predicted protein [Populus trichocarpa]	1.0	0.942	0.753	1e-160
224124084	428	predicted protein [Populus trichocarpa]	1.0	0.953	0.748	1e-158
449468404	440	PREDICTED: probable folate-biopterin tra	0.995	0.922	0.746	1e-156
449484102	440	PREDICTED: probable folate-biopterin tra	0.995	0.922	0.746	1e-156

>gi|255566088|ref|XP_002524032.1| transporter, putative [Ricinus communis] gi|223536759|gb|EEF38400.1| transporter, putative [Ricinus communis]

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 320/409 (78%), Positives = 359/409 (87%), Gaps = 1/409 (0%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           MAVNFFLKD LNV PSTLQLLQNSANLPMVGKP YGVVSDAVYISGQHR+PYIA GAFLQ
Sbjct: 36  MAVNFFLKDGLNVAPSTLQLLQNSANLPMVGKPFYGVVSDAVYISGQHRIPYIAFGAFLQ 95

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSS- 119
           AVSWLA+AI+  SS+SIF +SL+LLLSNLGASIAEVANDA+VAE+ KQP +SSKK+QS  
Sbjct: 96  AVSWLALAIMPPSSLSIFCISLYLLLSNLGASIAEVANDAIVAELGKQPSSSSKKSQSPS 155

Query: 120 SGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKL 179
           + ELQSFVWM+SS GGVLGNLL G AI RFSP  MFLFF L++ LQFFITI VRE +L L
Sbjct: 156 TDELQSFVWMASSAGGVLGNLLGGIAITRFSPQVMFLFFSLILALQFFITIFVRERSLNL 215

Query: 180 PKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSV 239
           PK+ SNVGIR QLS+LS AL+KPEI YS++WFAASY+IIPVLTGTMFFYQTQ+LKI SS+
Sbjct: 216 PKNSSNVGIRRQLSQLSLALKKPEIAYSISWFAASYAIIPVLTGTMFFYQTQHLKIDSSL 275

Query: 240 LGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP 299
           LGISKVFGQAAMLLW  +YNS LK++  RKLI+AIQA MAVFM+SDVLFVKG YR MGVP
Sbjct: 276 LGISKVFGQAAMLLWSAVYNSHLKTIPARKLIAAIQATMAVFMVSDVLFVKGFYRNMGVP 335

Query: 300 DSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVA 359
           DSLYV++FS LLEV+FFFKILPF+V IAQ+CPPGCEGS+MA V SA+ALAFIVSGYLGVA
Sbjct: 336 DSLYVVVFSGLLEVLFFFKILPFNVVIAQLCPPGCEGSLMALVASAIALAFIVSGYLGVA 395

Query: 360 LASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKKRE 408
           LASY GVTGDDFSG P AL+IQAVCT+LP+YWS  +PD  K KT KK E
Sbjct: 396 LASYVGVTGDDFSGFPRALLIQAVCTLLPIYWSSCVPDDKKPKTWKKNE 444

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510362|gb|AFK43247.1| unknown [Lotus japonicus]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 318/407 (78%), Positives = 358/407 (87%), Gaps = 3/407 (0%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           +AV+FFLKD LNVDPSTLQLLQNSANLPMVGKPLYG+VSD+VYISGQHRVPYIAIGAFLQ
Sbjct: 30  LAVSFFLKDGLNVDPSTLQLLQNSANLPMVGKPLYGLVSDSVYISGQHRVPYIAIGAFLQ 89

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQP-MTSSKKAQSS 119
           A+SWLA+AI S S+ISIFT+S++LLLSNLGASI EVANDA+VAEM KQP  +S     SS
Sbjct: 90  ALSWLAVAI-SPSNISIFTISIYLLLSNLGASIGEVANDAIVAEMGKQPPSSSKNSQSSS 148

Query: 120 SGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKL 179
           SG LQSFVW++SS+GGVLGNLL G  I RFSP +MFLF+GLL+ LQFFITI VRES+L L
Sbjct: 149 SGNLQSFVWIASSLGGVLGNLLGGIFIGRFSPQTMFLFYGLLLSLQFFITILVRESSLGL 208

Query: 180 PKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSV 239
           PKS S VGIR QLSELSAALRKPEI YS++WFAASY+IIP LTGTMFFYQTQ LKI SSV
Sbjct: 209 PKSPS-VGIRKQLSELSAALRKPEIAYSISWFAASYAIIPALTGTMFFYQTQYLKIGSSV 267

Query: 240 LGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP 299
           LGISKVFGQA MLLWG++YN  LKSV PRKLIS IQAMMAV M+SD LF +G YR+MGVP
Sbjct: 268 LGISKVFGQATMLLWGIVYNQYLKSVPPRKLISTIQAMMAVLMVSDFLFARGFYRQMGVP 327

Query: 300 DSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVA 359
           DSLYV+IFS  LEV+FFFKILPFSV IAQ+CPPGCEGSIMAF+MSAVALAFIVSGYLGVA
Sbjct: 328 DSLYVVIFSGFLEVLFFFKILPFSVLIAQLCPPGCEGSIMAFLMSAVALAFIVSGYLGVA 387

Query: 360 LASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKK 406
           LASY  VTG DFSGLPL L+IQA CT+LP++WS  +P+ VK+K+ +K
Sbjct: 388 LASYIKVTGSDFSGLPLGLLIQAACTLLPIFWSSCIPEYVKTKSKRK 434

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454605|ref|XP_002265200.1| PREDICTED: uncharacterized protein LOC100240796 [Vitis vinifera] gi|297737223|emb|CBI26424.3| unnamed protein product [Vitis vinifera]

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 306/406 (75%), Positives = 353/406 (86%), Gaps = 2/406 (0%)

Query: 2   AVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQA 61
           A+NFFLKD LN  PSTLQLLQ+SANLPMVGKPLYGVVSDA+YI GQHR+PYIAIGA LQA
Sbjct: 35  AINFFLKDGLNAAPSTLQLLQSSANLPMVGKPLYGVVSDAIYIGGQHRIPYIAIGAVLQA 94

Query: 62  VSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQP-MTSSKKAQSSS 120
           VSWLAIAIL  S+ISIFT++L+LLLSNLGASI EVANDA+VAE+ +QP  +S KK  SSS
Sbjct: 95  VSWLAIAILPSSNISIFTITLYLLLSNLGASIVEVANDAIVAEIGRQPTSSSKKKQASSS 154

Query: 121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLP 180
           GELQSFVWM+SSMGGVLGNLL G  IDRFS  +MFL FG+L+ +QF ITI   ES+L LP
Sbjct: 155 GELQSFVWMASSMGGVLGNLLGGVTIDRFSSQAMFLTFGILLAIQFLITITFSESSLHLP 214

Query: 181 KSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVL 240
           KS SNVGIR QLSEL+ AL+KPEI YS++WFAASY+IIP LTGTMFFYQTQ LKI SSVL
Sbjct: 215 KSPSNVGIRKQLSELTFALKKPEIAYSISWFAASYAIIPALTGTMFFYQTQYLKIDSSVL 274

Query: 241 GISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPD 300
           GISKVFGQAAMLLW +IYN  LKSV PRKLISAIQ  MA+FM+SD+LF+KG+YR MG+PD
Sbjct: 275 GISKVFGQAAMLLWSIIYNQYLKSVPPRKLISAIQVTMAMFMLSDILFMKGIYRNMGMPD 334

Query: 301 SLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVAL 360
           S+YV+IFS LLEV++FFKILPFSV IAQ+CP GCEGS+MAF+MSA+ALAFIVSGYLGVAL
Sbjct: 335 SVYVVIFSGLLEVLYFFKILPFSVLIAQLCPRGCEGSLMAFLMSAIALAFIVSGYLGVAL 394

Query: 361 ASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKK 406
           ASY GVT DDFSG+P  L+IQA CT++PL+WS  +P+  K++T KK
Sbjct: 395 ASYVGVTADDFSGMPQGLLIQAACTLVPLFWSSCIPEE-KARTEKK 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558095|ref|XP_003547343.1| PREDICTED: uncharacterized protein LOC100803182 [Glycine max]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 307/407 (75%), Positives = 348/407 (85%), Gaps = 3/407 (0%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           + V+F+LKD LNVDPS LQ+LQ+SANLPMVGKPLYG+VSD+VYISGQHRVPYIA+GAFLQ
Sbjct: 32  LVVSFYLKDGLNVDPSILQILQSSANLPMVGKPLYGLVSDSVYISGQHRVPYIALGAFLQ 91

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQ-SS 119
           A+SWL IAI S S++SIFT+S++LLLSNLGASIAEVANDA+VAEMAKQ  +S+K    SS
Sbjct: 92  ALSWLVIAI-SPSNMSIFTISIYLLLSNLGASIAEVANDAIVAEMAKQTPSSTKHPHPSS 150

Query: 120 SGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKL 179
           SG LQSFVW++SS GGVLGNLL G  I RFSP SMFL+FGLL+ LQFFITI+VRES+L L
Sbjct: 151 SGNLQSFVWIASSAGGVLGNLLGGIFIGRFSPQSMFLYFGLLLALQFFITISVRESSLGL 210

Query: 180 PKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSV 239
           PKS S  GIR QLS+L  ALRKPEI YS++WF ASY+IIP LTGTMFFYQTQ LKI SSV
Sbjct: 211 PKSPSG-GIRKQLSQLLVALRKPEISYSISWFTASYAIIPALTGTMFFYQTQYLKIDSSV 269

Query: 240 LGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP 299
           LGISKVFGQA MLLWG+IYN   KSV PRKLISAIQAMMA  MISD LFV+G YR+MGVP
Sbjct: 270 LGISKVFGQATMLLWGIIYNQYFKSVPPRKLISAIQAMMAFLMISDFLFVRGFYRQMGVP 329

Query: 300 DSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVA 359
           DSLYV+IFS  LEV+FFFKILPFSV IAQ+CPPGCEGSIMAF+MS VALA IVSGYLGVA
Sbjct: 330 DSLYVVIFSGFLEVLFFFKILPFSVLIAQMCPPGCEGSIMAFLMSCVALALIVSGYLGVA 389

Query: 360 LASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKK 406
           LAS   VT  DFSGLPL L+IQA CT+LP +WS  +PD V++K  +K
Sbjct: 390 LASCIKVTASDFSGLPLGLLIQATCTLLPTFWSSCIPDKVETKAKRK 436

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765697|emb|CAN77902.1| hypothetical protein VITISV_024388 [Vitis vinifera]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 305/406 (75%), Positives = 350/406 (86%), Gaps = 2/406 (0%)

Query: 2   AVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQA 61
           A+NFFLKD LN  PSTLQLLQ+SANLPMVGKPLYGVVSDA+YI GQHR+PYIAIGA LQA
Sbjct: 35  AINFFLKDGLNAAPSTLQLLQSSANLPMVGKPLYGVVSDAIYIGGQHRIPYIAIGAVLQA 94

Query: 62  VSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQP-MTSSKKAQSSS 120
           VSWLAIAIL  S+ISIFT++L+LLLSNLGASI EVANDA+VAE+ +QP  +S KK  SSS
Sbjct: 95  VSWLAIAILPSSNISIFTITLYLLLSNLGASIVEVANDAIVAEIGRQPTSSSKKKQASSS 154

Query: 121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLP 180
           GELQSFVWM+SSMGGVLGNLL G  IDRFS  +MFL FG+L+ +QF ITI   ES+L LP
Sbjct: 155 GELQSFVWMASSMGGVLGNLLGGVTIDRFSSQAMFLTFGILLAIQFLITITFSESSLHLP 214

Query: 181 KSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVL 240
           KS SNVGIR QLSEL+ AL+KPEI YS++WFAASY+IIP LTGTMFFYQTQ LKI SSVL
Sbjct: 215 KSPSNVGIRKQLSELTFALKKPEIAYSISWFAASYAIIPALTGTMFFYQTQYLKIDSSVL 274

Query: 241 GISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPD 300
           GISKVFGQAAMLLW +IYN  LKSV PRKLISA Q  MA FM+SD+LF+KG+YR MG+PD
Sbjct: 275 GISKVFGQAAMLLWSIIYNQYLKSVPPRKLISAXQVTMAXFMLSDILFMKGIYRNMGMPD 334

Query: 301 SLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVAL 360
           S+YV+IFS LLEV++FFKILPFSV IAQ+CP GCEGS+MAF+MSA+ALAFIVSGYLGVAL
Sbjct: 335 SVYVVIFSGLLEVLYFFKILPFSVLIAQLCPRGCEGSLMAFLMSAIALAFIVSGYLGVAL 394

Query: 361 ASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKK 406
           ASY GVT DDFSG+P  L+IQA CT++PL+WS  +P+  K +T KK
Sbjct: 395 ASYVGVTADDFSGMPQGLLIQAACTLVPLFWSSCIPEE-KXRTEKK 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533171|ref|XP_003535141.1| PREDICTED: uncharacterized protein LOC100820136 [Glycine max]

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 303/407 (74%), Positives = 351/407 (86%), Gaps = 3/407 (0%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           + V+F+LKD LNVDPSTLQ+LQ+SANLPMVGKPLYG++SD+VYISGQHRVPYIA+GAFLQ
Sbjct: 32  LVVSFYLKDGLNVDPSTLQILQSSANLPMVGKPLYGLLSDSVYISGQHRVPYIALGAFLQ 91

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQ-SS 119
           A+SWL IAI S +++SIF +S++LLLSNLGASIAEVANDA+VAEMAKQ  +S+K  Q SS
Sbjct: 92  ALSWLVIAI-SPTNMSIFAISIYLLLSNLGASIAEVANDAIVAEMAKQTPSSTKHPQPSS 150

Query: 120 SGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKL 179
           SG LQSFVW++SS GGVLGNLL G  I RFSP SMFL+FGLL+ LQFFITI+VRES+L+L
Sbjct: 151 SGNLQSFVWIASSAGGVLGNLLGGIFIGRFSPQSMFLYFGLLLALQFFITISVRESSLRL 210

Query: 180 PKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSV 239
           PKS S  GIR QLS+L  ALRKPEI YS++WF ASY+IIP LTGTMFFYQTQ LKI SSV
Sbjct: 211 PKSPSG-GIRKQLSQLLVALRKPEIAYSISWFTASYAIIPALTGTMFFYQTQYLKIDSSV 269

Query: 240 LGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP 299
           LGISKVFGQA MLLWG+IYN   KSVS RKLISAIQ MMA  M+SD LFV+G YR+MG+P
Sbjct: 270 LGISKVFGQATMLLWGIIYNQYFKSVSSRKLISAIQVMMAFLMVSDFLFVRGFYRQMGMP 329

Query: 300 DSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVA 359
           DSLYV+IFS  LEV+FFFKILPFSV IAQ+CPPGCEGS+MAF+MS VALAFIVSGYLGVA
Sbjct: 330 DSLYVVIFSGFLEVLFFFKILPFSVLIAQMCPPGCEGSVMAFLMSCVALAFIVSGYLGVA 389

Query: 360 LASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKK 406
           LAS   VTG+DFSGLP  L+IQA CT++P +WS  +PD V+SK  +K
Sbjct: 390 LASCIKVTGNDFSGLPFGLLIQAACTLVPTFWSSCIPDKVESKAKRK 436

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146101|ref|XP_002325881.1| predicted protein [Populus trichocarpa] gi|222862756|gb|EEF00263.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 308/409 (75%), Positives = 345/409 (84%), Gaps = 1/409 (0%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           MA+NFFLKD L+VDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHR+PYIAIGAFLQ
Sbjct: 25  MAINFFLKDGLHVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRIPYIAIGAFLQ 84

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQS-S 119
           AVSWLAIAILS S ISI T+SL LLLSNLGASIAEVANDA+VAE+ KQP    K +QS S
Sbjct: 85  AVSWLAIAILSPSGISIVTLSLCLLLSNLGASIAEVANDAIVAEIGKQPALPPKNSQSYS 144

Query: 120 SGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKL 179
           SGELQSFVW++SS GGVLGNLL G AI+ + P +MFLFF L V +Q FI I VRES+L L
Sbjct: 145 SGELQSFVWIASSAGGVLGNLLGGIAINIYGPQAMFLFFSLAVAVQLFIIITVRESSLNL 204

Query: 180 PKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSV 239
           PKS S VGIR QLSELS AL+KPEI YS+ W AAS +IIP LTGTMFFYQTQ L I SSV
Sbjct: 205 PKSSSRVGIRKQLSELSVALQKPEIAYSITWLAASNAIIPSLTGTMFFYQTQYLNINSSV 264

Query: 240 LGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP 299
           LGISKVFGQAAMLLW VIYN  LKSV  +KLI+AIQ +MA FM+SDVLFVKGVYR MGVP
Sbjct: 265 LGISKVFGQAAMLLWSVIYNRFLKSVPSKKLIAAIQGVMAAFMLSDVLFVKGVYRSMGVP 324

Query: 300 DSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVA 359
           D LYV++FS LLEV+FFFKILPF++ IAQ+CP GCEGS+MA V SA AL+FIVSGYLGVA
Sbjct: 325 DLLYVIVFSGLLEVLFFFKILPFNILIAQLCPSGCEGSLMALVASATALSFIVSGYLGVA 384

Query: 360 LASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKKRE 408
           L+S+ GVTG DFSG P AL+IQAVCT+LP+YWS  +PD  K ++  K E
Sbjct: 385 LSSFVGVTGSDFSGFPCALLIQAVCTLLPIYWSSCIPDDKKPESRSKNE 433

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124084|ref|XP_002319241.1| predicted protein [Populus trichocarpa] gi|222857617|gb|EEE95164.1| predicted protein [Populus trichocarpa]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 306/409 (74%), Positives = 347/409 (84%), Gaps = 1/409 (0%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           MA+NFF+KD LNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYI GQHR+PYIAIGAFLQ
Sbjct: 20  MAINFFVKDGLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYIFGQHRIPYIAIGAFLQ 79

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQ-PMTSSKKAQSS 119
           AVSWLAIAILS S ISIFT+SL LLLSNLGASIAEVANDA+VA + KQ  M+      SS
Sbjct: 80  AVSWLAIAILSPSGISIFTLSLCLLLSNLGASIAEVANDAIVAGIGKQLTMSPKTSQSSS 139

Query: 120 SGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKL 179
           SGELQSFVW++SS GGVLGNLL G AI+R+   +MFL F L V LQ F+TI V ES+L L
Sbjct: 140 SGELQSFVWIASSAGGVLGNLLGGIAINRYGAQAMFLIFSLTVALQLFVTITVHESSLNL 199

Query: 180 PKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSV 239
           PKS S VGIR QLSELS AL+KPEI YS+AW AAS +IIP LTGTMFFYQTQ L I SSV
Sbjct: 200 PKSSSGVGIRKQLSELSVALQKPEIAYSIAWLAASNAIIPALTGTMFFYQTQYLNINSSV 259

Query: 240 LGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP 299
           LGISKVFGQAAMLLW +IYN  LKSV  +KLI+AIQ +MAVFM+SD+LFVKGVYR MGVP
Sbjct: 260 LGISKVFGQAAMLLWSIIYNCYLKSVPSKKLIAAIQGVMAVFMLSDLLFVKGVYRNMGVP 319

Query: 300 DSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVA 359
           DSLYV++FS LLEV+FFFKILPF++ IAQ+CP GCEGS+MA V SA AL+FIVSGYLGVA
Sbjct: 320 DSLYVIVFSGLLEVLFFFKILPFNILIAQLCPSGCEGSLMALVASANALSFIVSGYLGVA 379

Query: 360 LASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKKRE 408
           L+S+ GVTG DFSG P AL+IQAVCT+LP+YWS  +PD  ++KT+ K+E
Sbjct: 380 LSSFVGVTGSDFSGFPQALLIQAVCTLLPIYWSSCIPDDKQAKTSTKKE 428

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468404|ref|XP_004151911.1| PREDICTED: probable folate-biopterin transporter 7-like [Cucumis sativus]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 303/406 (74%), Positives = 348/406 (85%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           MAVNFFLKD LNVDPSTLQLLQNSANLPMV KPLYG++SDAVYISGQHR+PYIAIGAFLQ
Sbjct: 29  MAVNFFLKDGLNVDPSTLQLLQNSANLPMVAKPLYGILSDAVYISGQHRIPYIAIGAFLQ 88

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
           AVSWL IA++  S IS+FT+S++LLLSNLGASIAEVANDA+VAE  KQP +S     SSS
Sbjct: 89  AVSWLPIALMPPSRISVFTISIYLLLSNLGASIAEVANDAIVAEAGKQPTSSKNSRASSS 148

Query: 121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLP 180
           GELQ+FVW++SS GG+LGNLL G AIDRFSP +MFLFFGLL+ LQFF+TI VRE +L LP
Sbjct: 149 GELQAFVWVASSAGGILGNLLGGVAIDRFSPQAMFLFFGLLLSLQFFLTIIVRERSLNLP 208

Query: 181 KSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVL 240
           +S  N GI  QLSEL+A L++PEI YS+ W A SYSI P LTGTMFFYQT++LKI SSVL
Sbjct: 209 QSSMNAGINKQLSELAAVLKRPEIAYSIIWLAVSYSITPALTGTMFFYQTEHLKIESSVL 268

Query: 241 GISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPD 300
           GISKVFGQAA+LLWGVIYN  LKS+  RKLIS+IQ +MAVFMISD+LFVKGVYREMGVPD
Sbjct: 269 GISKVFGQAALLLWGVIYNRHLKSIPSRKLISSIQVLMAVFMISDMLFVKGVYREMGVPD 328

Query: 301 SLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVAL 360
            +YV++FS L EV+ FFKILPFSV IA +CPPGCEGS+MAFVMSA+ALAFIVSG LGVAL
Sbjct: 329 FIYVVLFSGLSEVLLFFKILPFSVLIALLCPPGCEGSLMAFVMSAIALAFIVSGCLGVAL 388

Query: 361 ASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKK 406
           ASY GVT +DFSGL   LIIQAVCT+LPL  S+ +PD +K+K  +K
Sbjct: 389 ASYVGVTANDFSGLARGLIIQAVCTLLPLCCSWCIPDDIKAKDRRK 434

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484102|ref|XP_004156785.1| PREDICTED: probable folate-biopterin transporter 7-like [Cucumis sativus]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 303/406 (74%), Positives = 347/406 (85%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
           MAVNFFLKD LNVDPSTLQLLQNSANLPMV KPLYG++SDAVYISGQHR+PYIAIGAFLQ
Sbjct: 29  MAVNFFLKDGLNVDPSTLQLLQNSANLPMVAKPLYGILSDAVYISGQHRIPYIAIGAFLQ 88

Query: 61  AVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
           AVSWL IA++  S IS+FT+S++LLLSNLGASIAEVANDA+VAE  KQP +S     SSS
Sbjct: 89  AVSWLPIALMPPSRISVFTISIYLLLSNLGASIAEVANDAIVAEAGKQPTSSKNSRASSS 148

Query: 121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESALKLP 180
           GELQ+FVW++SS GG+LGNLL G  IDRFSP +MFLFFGLL+ LQFF+TI VRE +L LP
Sbjct: 149 GELQAFVWVASSAGGILGNLLGGVTIDRFSPQAMFLFFGLLLSLQFFLTIIVRERSLNLP 208

Query: 181 KSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVL 240
           +S  N GI  QLSEL+A L++PEI YS+ W A SYSI P LTGTMFFYQT++LKI SSVL
Sbjct: 209 QSSMNAGINKQLSELAAVLKRPEIAYSIIWLAVSYSITPALTGTMFFYQTEHLKIESSVL 268

Query: 241 GISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPD 300
           GISKVFGQAA+LLWGVIYN  LKSV  RKLIS+IQ +MAVFMISD+LFVKGVYREMGVPD
Sbjct: 269 GISKVFGQAALLLWGVIYNRHLKSVPSRKLISSIQVLMAVFMISDMLFVKGVYREMGVPD 328

Query: 301 SLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVAL 360
            +YV++FS L EV+ FFKILPFSV IA +CPPGCEGS+MAFVMSA+ALAFIVSG LGVAL
Sbjct: 329 FIYVVLFSGLSEVLLFFKILPFSVLIALLCPPGCEGSLMAFVMSAIALAFIVSGCLGVAL 388

Query: 361 ASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKK 406
           ASY GVT +DFSGL   LIIQAVCT+LPL  S+ +PD +K+K  +K
Sbjct: 389 ASYVGVTANDFSGLARGLIIQAVCTLLPLCCSWCIPDDIKAKDRRK 434

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2010911	442	AT1G64890 "AT1G64890" [Arabido	0.985	0.909	0.588	3.5e-123
TAIR|locus:2051078	538	AT2G33280 "AT2G33280" [Arabido	0.948	0.719	0.378	3.6e-73
TAIR|locus:2197803	542	AT1G04570 "AT1G04570" [Arabido	0.948	0.714	0.397	4.1e-72
TAIR|locus:2160150	491	AT5G54860 "AT5G54860" [Arabido	0.526	0.437	0.302	2.7e-50
TAIR|locus:2045462	560	AT2G32040 "AT2G32040" [Arabido	0.968	0.705	0.259	4.3e-38
UNIPROTKB|Q55721	494	slr0642 "Folate-biopterin tran	0.965	0.797	0.254	1.5e-33
TAIR|locus:2183810	503	AT5G10820 "AT5G10820" [Arabido	0.950	0.771	0.232	1.6e-26
TAIR|locus:2179285	499	AT5G25050 "AT5G25050" [Arabido	0.941	0.769	0.240	1.5e-25
TAIR|locus:2017814	497	AT1G79710 "AT1G79710" [Arabido	0.955	0.784	0.211	1.1e-23
GENEDB_PFALCIPARUM|MAL8P1.13	505	MAL8P1.13 "integral membrane p	0.943	0.762	0.214	8.8e-20

TAIR|locus:2010911 AT1G64890 "AT1G64890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1211 (431.4 bits), Expect = 3.5e-123, P = 3.5e-123
 Identities = 240/408 (58%), Positives = 299/408 (73%)

Query:     1 MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
             +  NFFL + L V+PS LQLLQNSANLPMV KP+YGVVSD+VY  GQHR+PYIA+GA LQ
Sbjct:    38 LGANFFLTEQLRVNPSVLQLLQNSANLPMVAKPIYGVVSDSVYFFGQHRIPYIAVGALLQ 97

Query:    61 AVSWXXXXXXXXXXXXXFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
             A+SW               +S++LLLSNLGAS+ EVANDA+VAE  KQ     K +++ S
Sbjct:    98 AISWLAIAFLSRSNVSILALSIYLLLSNLGASLVEVANDAIVAESGKQ-----KTSETQS 152

Query:   121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMXXXXXXXXXXXXXITIAVRESALKLP 180
             GEL SFVWM SS+GG+LGNLL G AI  FS  S              +TI +RE +L LP
Sbjct:   153 GELPSFVWMVSSLGGILGNLLGGIAIKTFSAQSTFLVFGILALLQFLVTINIREKSLNLP 212

Query:   181 KSQSNVG-IRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSV 239
             ++ S  G IR  LS+LS  LRKPEI YS+AW A S +++PVLTGTMFFYQT+ LKI +S+
Sbjct:   213 ENPSPAGGIRKHLSDLSHVLRKPEISYSIAWIAVSTAVVPVLTGTMFFYQTKFLKIDASL 272

Query:   240 LGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP 299
             LGISKVFGQ AMLLWG  YN  LK++ PRKL++AIQ  +A F+ISD+LFVKGVYR++GV 
Sbjct:   273 LGISKVFGQIAMLLWGFAYNRWLKAMRPRKLLTAIQVTIAFFVISDLLFVKGVYRDLGVS 332

Query:   300 DSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVA 359
             DS+YVL FS  LE +F+FKILPF+V +A++CPPGCEGS+MAFVMSA+ALAFIVSGYLG+ 
Sbjct:   333 DSVYVLFFSGFLETLFYFKILPFTVLMARLCPPGCEGSLMAFVMSAIALAFIVSGYLGIV 392

Query:   360 LASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTKKR 407
             LAS+ GVT DDFSG    L I+A C  +PL  + ++ D  ++K   K+
Sbjct:   393 LASFVGVTEDDFSGFTRGLAIEACCVGIPLILTSWIYDEAETKEKSKK 440

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2051078 AT2G33280 "AT2G33280" [Arabidopsis thaliana (taxid:3702)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 153/404 (37%), Positives = 247/404 (61%)

Query:     1 MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
             +A+NF +   LN+ PSTLQL+Q +A+LPMV KPLYGV+SD +YI G  RVPYI++G  LQ
Sbjct:   103 LALNFHMAHCLNLKPSTLQLVQYTASLPMVAKPLYGVLSDVLYIGGARRVPYISVGVLLQ 162

Query:    61 AVSWXXXXXXXXXXXXXFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
              ++W              ++  F+LLSNLGASI EV+ DALVAE   +   +        
Sbjct:   163 GLAWGSLAIFPGAREVLPSLMAFILLSNLGASITEVSQDALVAEYGLRYQING------- 215

Query:   121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMXXXXXXXXXXXXXITIAVRESALKLP 180
               LQS+  M+S++GG+LGNLL G+ + +  P  +             ++++ +E ++ LP
Sbjct:   216 --LQSYALMASAVGGILGNLLGGYCLLKTPPRILFLAFTALLSLQLIVSLSSKEESVNLP 273

Query:   181 KS-------QSNVGI-RAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQN 232
             +         S +GI + Q  +L   ++  EI   + W  +S +++P+L+G++F YQTQ 
Sbjct:   274 RIGEVTPEISSVLGIVKKQFLDLKGIVQVDEISQPLIWIVSSIALVPLLSGSVFCYQTQV 333

Query:   233 LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGV 292
             L +  SV+G+SKV GQ  +L   V+Y+   K +  R LI  +Q + A  ++ D + VK +
Sbjct:   334 LNLDPSVIGMSKVIGQLMLLCLTVVYDRYWKKLPMRALIHIVQLLYAFSLLFDYILVKQI 393

Query:   293 YREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIV 352
                 G+ ++ +VL FSS+ E++  FKILPFSV +A +CP GCEGSI +F+ S + L+ +V
Sbjct:   394 NLAFGISNTAFVLCFSSVAEILAQFKILPFSVLLANMCPGGCEGSITSFLASTLCLSSVV 453

Query:   353 SGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMP 396
             SG+ GV +A+  G+T  ++S LP  ++IQ++  ++PL++ +++P
Sbjct:   454 SGFTGVGMANMIGITSKNYSNLPAGILIQSLAALVPLWFIHYVP 497

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2197803 AT1G04570 "AT1G04570" [Arabidopsis thaliana (taxid:3702)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 159/400 (39%), Positives = 240/400 (60%)

Query:     1 MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
             +A+NF +  SL + PSTLQL+Q S +LPMV KPLYGV+SD +YI    RVPYIAIG FLQ
Sbjct:   106 LALNFHMVHSLALQPSTLQLVQYSCSLPMVAKPLYGVLSDVLYIGSGRRVPYIAIGVFLQ 165

Query:    61 AVSWXXXXXXXXXXXXXFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
              ++W              ++   +LLSNLGASI EVA DALVAE   +   +        
Sbjct:   166 VLAWGSMGIFQGAREVLPSLVACVLLSNLGASITEVAKDALVAEYGLRYRING------- 218

Query:   121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMXXXXXXXXXXXXXITIAVRESALKLP 180
               LQS+  M+S+ GGVLGNLL G+ +    P                ++++ +E +  LP
Sbjct:   219 --LQSYALMASAAGGVLGNLLGGYLLLTTPPKISFLVFSALLSLQLVVSLSSKEESFGLP 276

Query:   181 K--SQSNV--GIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIR 236
             +    S+V   ++ Q+S L  A++  EI   + W   S +++P+L+G++F YQTQ L + 
Sbjct:   277 RIAETSSVLESVKKQISNLKEAIQADEISQPLIWAVVSIAMVPLLSGSVFCYQTQVLNLD 336

Query:   237 SSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREM 296
              SV+G+SKV GQ  +L   V+Y+  LK++  R LI  IQ +  + ++ D + VK +    
Sbjct:   337 PSVIGMSKVIGQLMLLCLTVVYDRYLKTLPMRPLIHIIQLLYGLSILLDYILVKQINLGF 396

Query:   297 GVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYL 356
             G+ + +YVL FSSL E++  FKILPF+V +A +CP GCEGS+ +F+ S + L+ IVS +L
Sbjct:   397 GISNEVYVLCFSSLAEILAQFKILPFAVRLASMCPQGCEGSVTSFLASTLCLSQIVSAFL 456

Query:   357 GVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMP 396
             GV LA+  G+T  ++S L   ++IQ++  + PL + + +P
Sbjct:   457 GVGLANLIGITSSNYSNLSSGILIQSLAALAPLCFMHLVP 496

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2160150 AT5G54860 "AT5G54860" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 2.7e-50, Sum P(2) = 2.7e-50
 Identities = 65/215 (30%), Positives = 115/215 (53%)

Query:   182 SQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLG 241
             SQ    ++A    L  A ++P I+  +AWF  ++  +P L+  MF+YQT+ L++ ++ LG
Sbjct:   268 SQWFQSLKAATFGLGRAFKQPIILRPMAWFFIAHITVPNLSTVMFYYQTEVLQLDAAFLG 327

Query:   242 ISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDS 301
              ++V G   ++    IYN  L+ ++ RK +      ++V ++ D++ V       GV D 
Sbjct:   328 TARVVGWLGLMFGTFIYNRYLQDMTLRKSLLFAHIGLSVTILLDMVLVSRANVGYGVSDK 387

Query:   302 LYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALA 361
               VL  S+L + +   K +PF +   ++CPPG EG++ A  MS   L   V  ++G  LA
Sbjct:   388 TMVLFGSALGDAINQLKFMPFLILSGRLCPPGIEGTLFALFMSINNLGNTVGSFMGAGLA 447

Query:   362 SYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMP 396
             S  G++   F  + + L IQ  CT +P+ + + +P
Sbjct:   448 SLLGISSGSFDNMFMGLAIQVFCTYIPVLFLFLIP 482

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2045462 AT2G32040 "AT2G32040" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 108/416 (25%), Positives = 191/416 (45%)

Query:     1 MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
             +AV+F+LKD L++DP+   ++   ++LP + KPLYG +SD+V + G  R  Y+ +   L 
Sbjct:   145 LAVSFYLKDDLHLDPAETAVITGLSSLPWLVKPLYGFISDSVPLFGYRRRSYLVLSGLLG 204

Query:    61 AVSWXXXXXXXXXXXXXFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
             A SW             ++ +  +LL +L  + ++V  D++V E A+       ++QS S
Sbjct:   205 AFSWSLMAGFVDSK---YSAAFCILLGSLSVAFSDVVVDSMVVERARG------ESQSVS 255

Query:   121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMXXXXXXXXXXXXXITIAVRESALKLP 180
             G LQS  W SS+ GG++ +   G  ++ +    +             + + V E  +  P
Sbjct:   256 GSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGVTALLPLITSAVAVLVNEQRVVRP 315

Query:   181 KS--QSNVGI---------RAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQ 229
              S  + N+ +         +  + +L  A+++P +      F   +   P     MF++ 
Sbjct:   316 ASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPNVFLPTL-FIFLWQATPHSDSAMFYFT 374

Query:   230 TQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFV 289
             T  L      LG  K+    A LL   +YN  LK+V  RK+            ++ V+ V
Sbjct:   375 TNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPLRKIFLVTTIFGTGLGMTQVILV 434

Query:   290 KGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALA 349
              G  R++G+ D  + +  S +L V+     +P  V  A++CP G E ++ A +MS     
Sbjct:   435 SGFNRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAARLCPEGMEATLFATLMSISNGG 494

Query:   350 FIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTK 405
              ++ G +G  L    G+T D F  L   +I+  + ++LPL     +P       TK
Sbjct:   495 SVLGGLMGAGLTQAFGITRDSFGNLSTLIILCNLSSLLPLPLLGLLPRDSPDTLTK 550

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0008517 "folic acid transporter activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0015231 "5-formyltetrahydrofolate transporter activity" evidence=IDA

GO:0015350 "methotrexate transporter activity" evidence=IDA

GO:0051958 "methotrexate transport" evidence=IDA

UNIPROTKB|Q55721 slr0642 "Folate-biopterin transporter" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 104/409 (25%), Positives = 187/409 (45%)

Query:     1 MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
             +AV+FFLKD L + P+ +  L      P + KP+ G++SD V + G  R  Y+ +   + 
Sbjct:    54 LAVSFFLKDELGLSPAAMGALIGLGAAPWILKPVLGLMSDTVPLFGYRRRSYLWLSGLMG 113

Query:    61 AVSWXXXXXXXXXXXXXFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
             +  W                 L LL ++L  +I +V  D+LV E A+      +++ +  
Sbjct:   114 SAGWLLFAAWVSSGTQA---GLVLLFTSLSVAIGDVIVDSLVVERAQ------RESLAQV 164

Query:   121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMXXXXXXXXXXXXXITIAVRESALKLP 180
             G LQS  W ++++GG++     G  ++ FS  ++                 + E  +   
Sbjct:   165 GSLQSLTWGAAAVGGIITAYASGALLEWFSTRTVFAITAIFPLLTVGAAFLISE--VSTA 222

Query:   181 KSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVL 240
             + +     +AQ+  +  A+R+  I+     F   +   P      F++ T  L      L
Sbjct:   223 EEEEKPQPKAQIKLVWQAVRQKTILLPTL-FIFFWQATPSAESAFFYFTTNELGFEPKFL 281

Query:   241 GISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPD 300
             G  ++    A L+   +Y   LK++  R ++     + ++  ++ ++ +    R MG+ D
Sbjct:   282 GRVRLVTSVAGLIGVGLYQRFLKTLPFRVIMGWSTVISSLLGLTTLILITHANRAMGIDD 341

Query:   301 SLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVAL 360
               + L  S +L V      +P  V  A++CPPG E ++ A +MS + LA ++S  +G  L
Sbjct:   342 HWFSLGDSIILTVTGQIAFMPVLVLAARLCPPGIEATLFALLMSVMNLAGVLSFEVGSLL 401

Query:   361 ASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDG---VKSKTTKK 406
               + GVT   F  L L +II  + T+LPL +   +P G   VK KT K+
Sbjct:   402 THWLGVTETQFDNLALLVIITNLSTLLPLPFLGLLPAGDPQVKDKTEKE 450

GO:0008517 "folic acid transporter activity" evidence=IDA

GO:0015231 "5-formyltetrahydrofolate transporter activity" evidence=IMP;IDA

GO:0015350 "methotrexate transporter activity" evidence=IDA

GO:0015884 "folic acid transport" evidence=IDA

GO:0015885 "5-formyltetrahydrofolate transport" evidence=IMP;IDA

GO:0051958 "methotrexate transport" evidence=IDA

TAIR|locus:2183810 AT5G10820 "AT5G10820" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 1.6e-26, P = 1.6e-26
 Identities = 94/404 (23%), Positives = 176/404 (43%)

Query:     1 MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
             +  +++ KD   V PS +QL      +P V +P++G+ +D   I G  R PY  +   L 
Sbjct:    78 VVTDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDVFPIKGYKRKPYFVVSGVLG 137

Query:    61 AVSWXXXXXXXXXXXXXFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
              VS                +S  L +S    +IA+V  DA +A       T+S   +S +
Sbjct:   138 LVS-AIAIVVLGKLPAALALSCLLGVS-AAMAIADVVIDACIA-------TNSINIRSLA 188

Query:   121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMXXXXXXXXXXXXXITIAV---RESAL 177
              ++QS   + SS G ++G    G  + +  P                +   +   R S +
Sbjct:   189 PDIQSLCMVCSSAGALVGYATSGVFVHQLGPQGALGVLAFSPATIVILGFFIYEKRSSTV 248

Query:   178 KLPKSQSNV-GIRAQLSELSAALRKPEIMYSVAWFAASYSI-IPVLTGTMFFYQ--TQNL 233
                K++ +  G+   +  +   ++ PE+     +   S ++ I    G  ++Y   T   
Sbjct:   249 PTQKTKKDTDGLGVAVKGMCKTVKYPEVWKPSLYMFISLALNISTHEGHFYWYTDPTAGP 308

Query:   234 KIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVY 293
                   +GI    G  A +   +IY+  LK  S R ++   Q +     + D++F+K   
Sbjct:   309 AFSQEFVGIIYAVGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGMLDLVFIKRWN 368

Query:   294 REMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVS 353
               +G+PDSL+V+   S  +++   + +P  V   ++CP G EG+  AF+M   +   + S
Sbjct:   369 LTLGIPDSLFVITEESFTKMISKIRWIPMVVLSTRLCPLGIEGTFFAFLMCIDSFGQLAS 428

Query:   354 GYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPD 397
              + G  +    GVT  DF  L L ++I+ +  ++ + + + +PD
Sbjct:   429 KWGGGFVLHAFGVTRHDFGNLWLVILIRNILRLVTVCFVFLVPD 472

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2179285 AT5G25050 "AT5G25050" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 98/407 (24%), Positives = 179/407 (43%)

Query:     1 MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
             +A  +++KD   V PS  Q L     +P + KPL+G+++D + I G HR PY  +   L 
Sbjct:    66 VATEYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRPYFILAGVLG 125

Query:    61 AVSWXXXXXXXXXXXXXFTMSLF-LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSS 119
              VS                ++LF + +S+   +IA+V  DA  A        +S K  S 
Sbjct:   126 VVS---LLFISLHSNLHLYLALFWMTISSAAMAIADVTIDACTAY-------NSIKHPSL 175

Query:   120 SGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMXXXXXXXXXXXXXITIAVRESALKL 179
             + ++QS   +SSS+G +LG  + G  +       +             + I   E    +
Sbjct:   176 ASDMQSLCSLSSSIGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSVVGIVFSEP--HV 233

Query:   180 PKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGT-----MFFYQTQNLK 234
             P   S   +  + ++   A+ +  +  S  W  + Y  I +  G      +F++ T +  
Sbjct:   234 P-GFSYKQVNQKFTDAGKAMWRT-MKCSDVWRPSLYMYISLTLGLNIHEGLFYWFTDSKD 291

Query:   235 ---IRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKG 291
                     +G     G    +L   +Y   LK    R L    Q + A+  + D++ V  
Sbjct:   292 GPLFAQETVGFILSIGSIGSILAATLYQLVLKDHPFRGLCLWTQLLFALSGMLDLILVFR 351

Query:   292 VYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFI 351
             +  + G+PD L++++   + +++   K +P  V  +++CP G EG+  A +MS      +
Sbjct:   352 LNLKFGLPDYLFIVVDEIVSQMIGRLKWMPLLVLTSKLCPHGIEGTFFALLMSIDNAGLM 411

Query:   352 VSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDG 398
              S +LG  +     VT  +F  L LA++++ V  +LPL + + +P G
Sbjct:   412 TSSWLGGIMLHVLKVTRTEFGNLWLAVLVRNVMRLLPLCFLFLVPKG 458

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2017814 AT1G79710 "AT1G79710" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 87/412 (21%), Positives = 178/412 (43%)

Query:     1 MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
             ++  ++ KD   + PS  Q+      +P + KPL+G+++D V + G  R PY  +  FL 
Sbjct:    70 VSTQYYFKDEQKIQPSQAQIYVGLIQIPWIIKPLWGLLTDVVPVLGYRRRPYFILAGFLA 129

Query:    61 AVSWXXXXXXXXXXXXXFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSS 120
              +S                +S  L+  + G +IA+V  DA V + +    T +       
Sbjct:   130 MISMMVLWLHTNLHLA-LALSC-LVAGSAGVAIADVTIDACVTQCSISHPTLA------- 180

Query:   121 GELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMXXXXXXXXXXXXXITIAVRESALKLP 180
              ++QS   + SS+G ++G  L G  +       +             + + ++ES     
Sbjct:   181 ADMQSLCGLCSSIGSLVGFSLSGVLVHLVGSKGVYGLLGVTAGLLVVVGMVLKESP---S 237

Query:   181 KSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGT-----MFFYQTQNL-- 233
             +S     +  +  +  +A+ K    Y   W    + ++           MF++ T +   
Sbjct:   238 RSLGRKHVNDKFLDAGSAIWKT-FQYGEVWRPCLFMLLSAAVSLHIHEGMFYWYTDSKDG 296

Query:   234 -KIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGV 292
                    +G    FG    L+  ++Y + LK+   R ++    ++  +    D++ V  +
Sbjct:   297 PSFSKEAVGSIMSFGAIGSLVGILLYQNFLKNFPFRNVVFWALSLSVLSGFLDLILVLRI 356

Query:   293 YREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIV 352
               ++G+PD  ++++   +  ++   K LP  V  +++CP G EG+  A +MS   +  +V
Sbjct:   357 NLKLGLPDYFFIVVDEFVSHMISRIKWLPLLVLSSKLCPAGMEGTFFALLMSIEHIGHLV 416

Query:   353 SGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTT 404
             S + G  L     VT   F  L L ++I+++  ++P+   + +P+ V S +T
Sbjct:   417 SSWGGGVLLHALKVTRTQFDNLWLVIVIRSLLRVIPIGLVFLIPN-VDSNST 467

GO:0005215 "transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GENEDB_PFALCIPARUM|MAL8P1.13 MAL8P1.13 "integral membrane protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 256 (95.2 bits), Expect = 8.8e-20, P = 8.8e-20
 Identities = 87/405 (21%), Positives = 181/405 (44%)

Query:     1 MAVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQ 60
             +++ + LKD+ ++ P++L ++     +P   K ++ V+SD   I G  R  Y+ +G+FL 
Sbjct:    72 LSIIYLLKDNYHLHPASLSIVMCFIKIPWSIKLVWAVISDNYPIFGYRRKYYLLLGSFLC 131

Query:    61 AVSWXXXXXXXXXXXXXFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQ-SS 119
              +S              F   L L +   G+S+  V  +A V E       S++    +S
Sbjct:   132 ILS--LICLGLITHNNLFITILLLFIYFFGSSLCNVIGEAQVVE-------SNRNCSINS 182

Query:   120 SGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMXXXXXXXXXXXXXITIAVRESALKL 179
             S    S  +    +   + + L G+ +   S   +             + I V  S   +
Sbjct:   183 SARNVSLFFAFRKLSFAIMSYLSGYLLLLISKKHIFLIGSF-------LPICVFTSGFFI 235

Query:   180 --PKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRS 237
                ++ +   I+ Q+  + + ++   +   + +     S  P    T+FFY T  LK   
Sbjct:   236 IEKRNYTKSSIKDQIKCIYSIIKLSYLKNFIIFIFIMMST-PSCGNTLFFYITNELKFSP 294

Query:   238 SVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMG 297
             ++LG   +F   A  +  + Y      +  RKL+     ++  F +  ++ +K V   + 
Sbjct:   295 NLLGKMAMFQSLASFISIISYMLFFTKIDIRKLLLYSTIIITPFCLLPLVVIKKVNYFLF 354

Query:   298 VPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLG 357
             +P++L+ +  + L+E +  F+ +P  V  +++ P G E +I + ++S+   A I+S +L 
Sbjct:   355 IPNTLFFITDTVLIEFIAEFQTMPILVLCSRLIPEGFESTIYSLLLSSNNFASIISSFLS 414

Query:   358 VALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSK 402
               L     +T  +F+ LP  +II  +  I+P+++ Y +P+  + K
Sbjct:   415 SLLTYSLNITSTNFTNLPYMIIICCLTNIIPIFFLYILPNHSQKK 459

GO:0016021 "integral to membrane" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XIQ7	FBT7_ARATH	No assigned EC number	0.6299	0.9852	0.9095	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00013884001 SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (440 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
pfam03092	425	pfam03092, BT1, BT1 family	1e-100
TIGR00788	468	TIGR00788, fbt, folate/biopterin transporter	1e-55
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-05

>gnl|CDD|111933 pfam03092, BT1, BT1 family

 Score =  305 bits (782), Expect = e-100
 Identities = 133/406 (32%), Positives = 196/406 (48%), Gaps = 17/406 (4%)

Query: 2   AVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQA 61
           +  F LKD L +DP+  Q L   A LP V KP  GV+SD   + G  R PY+A+   L  
Sbjct: 11  STQFMLKDRLGIDPARYQRLSGLATLPWVIKPFTGVLSDGFALFGYRRRPYLALSGLLGG 70

Query: 62  VSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSG 121
              L+  +L     S    + F+ LS+LG ++ +V +DAL +E  +Q          +  
Sbjct: 71  AFALSYGLLPAKESSAAVAAAFIFLSSLGKALVDVLSDALYSERGRQ-------EPLAGP 123

Query: 122 ELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRES----AL 177
            L S++W  S++GG++G++L G  +D F P   FL    L +L       ++E       
Sbjct: 124 SLVSWIWGCSAVGGIIGSVLSGPLLDTFKPQISFLVTAALQLLTCVDAAVLKEEEVLGLG 183

Query: 178 KLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPV--LTGTMFFYQTQNLKI 235
           + P        R  +S    A R PEI+        S+   P+      MF+YQT  L  
Sbjct: 184 RPPVPCLLGLNREVISRNWKAFRYPEILAPT-LTWISFWAAPLVIAKADMFYYQTNELGG 242

Query: 236 RS---SVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGV 292
            +   S  G  KV G  A LL   +YN  LK    R        +  +  + D++ VK  
Sbjct: 243 PNFSYSFYGTVKVIGSIAGLLGVTLYNRFLKKHPYRLTFGVTTVLQVLSGLFDLILVKRW 302

Query: 293 YREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIV 352
            R +G+ D +Y+L  S +LEV++  K +PF V +A++CP G E ++ A + S   L  IV
Sbjct: 303 NRYLGISDHVYILGDSIILEVLYMLKFMPFLVLLARLCPRGSESTVFALLASIANLGQIV 362

Query: 353 SGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDG 398
           S  LG  L  Y GVT D FS LPL L+I ++CT+LPL     +P  
Sbjct: 363 SSSLGALLMEYLGVTEDQFSNLPLLLLIGSLCTLLPLPLLGLLPPS 408

Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters. One such protein, previously termed (and is still annotated as) ORFG, was shown to encode a biopterin transport protein using null mutants, thus being subsequently renamed BT1. The significant similarity of ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative transmembrane protein and another member of this family) was previously noted. This family also contains five putative Arabidopsis thaliana proteins of unknown function. In addition, it also contains two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). Length = 425

>gnl|CDD|233127 TIGR00788, fbt, folate/biopterin transporter

 Score =  189 bits (483), Expect = 1e-55
 Identities = 110/414 (26%), Positives = 196/414 (47%), Gaps = 33/414 (7%)

Query: 2   AVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQA 61
            ++  L D L +D +  Q L   ++L    KP  GV+SD   + G  +  Y+        
Sbjct: 47  PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLV------- 99

Query: 62  VSWLAIAILSQSSISIFTMS-----LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKA 116
           +S L  + +    +     S      F+ L+ L  ++ +V  D+L +E  ++       +
Sbjct: 100 LSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRE-------S 152

Query: 117 QSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRE-S 175
            S+   L S++W +S+ GG++ +LL G  +D+     +FL    L++LQ F++   +E  
Sbjct: 153 PSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERR 212

Query: 176 ALKLPKSQSNVG-------------IRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLT 222
           A   P+  + +              ++ Q+  L  A++  EI   + +   SY+ +P  +
Sbjct: 213 AFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGAS 272

Query: 223 GTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFM 282
           G++F   TQ L    S  G+SKV G    L     Y+  LK+   R L      +  +  
Sbjct: 273 GSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSS 332

Query: 283 ISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFV 342
           + D++ VK      G+ D ++VL  S + EV+   K +PF V +A++CP GCE S+ A +
Sbjct: 333 LFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALL 392

Query: 343 MSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMP 396
            S + L   VSG+LGV L    G+T D+ + L L ++  ++  +LPL   + +P
Sbjct: 393 ASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLP 446

The Folate-Biopterin Transporter (FBT) Family (TC 2.A.71)The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity [Cell envelope, Other]. Length = 468

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 63/359 (17%), Positives = 123/359 (34%), Gaps = 34/359 (9%)

Query: 1   MAVNFFLKDSLNVDPSTLQLLQNSANLPM-VGKPLYGVVSDAVYISGQHRVPYIAIGAFL 59
            A+  +L + L + P+ + LL  + +L   + +PL G +SD        R   + IG  L
Sbjct: 17  PALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-----GRRRVLLIGLLL 71

Query: 60  QAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSS 119
            A+  L +   S    S++ + +  +L  LG      A  AL+A+               
Sbjct: 72  FALGLLLLLFAS----SLWLLLVLRVLQGLGGGALFPAAAALIADWFPP---------EE 118

Query: 120 SGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGL--LVVLQFFITIAVRESAL 177
            G     +     +G  LG LL G     F   + FL   +  L+       +  R    
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPE 178

Query: 178 KLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRS 237
                 +       +      LR P +   +A     ++   +LT    + +   L    
Sbjct: 179 SKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALL 238

Query: 238 S--VLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYRE 295
           +  +LG++ + G    LL G +       +  R+ +     ++ +  +   L        
Sbjct: 239 AGLLLGLAGLLGAIGRLLLGRL----SDRLGRRRRLLLALLLLILAALGLALLS------ 288

Query: 296 MGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSG 354
                SL++L+   LL           +  ++ + P    G+      +A +L   +  
Sbjct: 289 -LTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	100.0
TIGR00788	468	fbt folate/biopterin transporter. The only functio	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK11902	402	ampG muropeptide transporter; Reviewed	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK12307	426	putative sialic acid transporter; Provisional	99.98
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.98
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.98
PRK10504	471	putative transporter; Provisional	99.98
PRK11010	491	ampG muropeptide transporter; Validated	99.98
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.98
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.98
PRK10091	382	MFS transport protein AraJ; Provisional	99.98
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.98
PRK05122	399	major facilitator superfamily transporter; Provisi	99.97
COG2211	467	MelB Na+/melibiose symporter and related transport	99.97
PRK09669	444	putative symporter YagG; Provisional	99.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.97
PRK12382	392	putative transporter; Provisional	99.97
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.97
PRK10054	395	putative transporter; Provisional	99.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
PRK03699	394	putative transporter; Provisional	99.97
PRK10429	473	melibiose:sodium symporter; Provisional	99.97
PRK15011	393	sugar efflux transporter B; Provisional	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
TIGR00901	356	2A0125 AmpG-related permease.	99.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.97
PRK09874	408	drug efflux system protein MdtG; Provisional	99.97
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.97
PRK09952	438	shikimate transporter; Provisional	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
PRK03893	496	putative sialic acid transporter; Provisional	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.97
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.96
PRK11043	401	putative transporter; Provisional	99.96
PRK09528	420	lacY galactoside permease; Reviewed	99.96
TIGR00898	505	2A0119 cation transport protein.	99.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.96
PF13347	428	MFS_2: MFS/sugar transport protein	99.96
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.96
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.96
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.96
TIGR00895	398	2A0115 benzoate transport.	99.96
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.96
PRK10133	438	L-fucose transporter; Provisional	99.96
PRK11462	460	putative transporter; Provisional	99.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.96
PRK09848	448	glucuronide transporter; Provisional	99.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.95
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.95
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.95
PLN00028	476	nitrate transmembrane transporter; Provisional	99.95
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.95
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.95
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.95
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.95
KOG0569	485	consensus Permease of the major facilitator superf	99.95
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.95
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.94
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.94
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.94
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.94
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.94
KOG2532	466	consensus Permease of the major facilitator superf	99.94
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.94
KOG2615	451	consensus Permease of the major facilitator superf	99.93
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.93
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.92
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.91
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.91
KOG2533	495	consensus Permease of the major facilitator superf	99.91
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.91
KOG0254	513	consensus Predicted transporter (major facilitator	99.9
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.89
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.88
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.87
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.87
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.85
TIGR00805	633	oat sodium-independent organic anion transporter.	99.84
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.84
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.84
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.83
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.83
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.79
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.79
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.78
PTZ00207	591	hypothetical protein; Provisional	99.72
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.71
KOG2563	480	consensus Permease of the major facilitator superf	99.56
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	99.53
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.51
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.5
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.47
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	99.45
PRK15011	393	sugar efflux transporter B; Provisional	99.44
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.44
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.43
PRK10054	395	putative transporter; Provisional	99.42
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.39
KOG3762	618	consensus Predicted transporter [General function	99.38
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.37
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.37
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.36
PRK10642	490	proline/glycine betaine transporter; Provisional	99.35
PRK12382	392	putative transporter; Provisional	99.35
PRK11663	434	regulatory protein UhpC; Provisional	99.33
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.33
PRK10489	417	enterobactin exporter EntS; Provisional	99.32
PRK10091	382	MFS transport protein AraJ; Provisional	99.32
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.31
PRK05122	399	major facilitator superfamily transporter; Provisi	99.31
PRK09528	420	lacY galactoside permease; Reviewed	99.31
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.3
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.3
PRK09874	408	drug efflux system protein MdtG; Provisional	99.28
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.28
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.28
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.27
TIGR00900	365	2A0121 H+ Antiporter protein.	99.27
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.27
TIGR00891	405	2A0112 putative sialic acid transporter.	99.26
PRK03545	390	putative arabinose transporter; Provisional	99.26
KOG0637	498	consensus Sucrose transporter and related proteins	99.25
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.25
TIGR00893	399	2A0114 d-galactonate transporter.	99.25
PRK03699	394	putative transporter; Provisional	99.24
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.24
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.24
PRK11043	401	putative transporter; Provisional	99.23
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.23
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.23
TIGR00895	398	2A0115 benzoate transport.	99.23
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.23
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.22
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.22
PRK11010	491	ampG muropeptide transporter; Validated	99.22
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.21
PRK03633	381	putative MFS family transporter protein; Provision	99.21
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.21
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.21
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.2
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.18
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.18
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.18
PRK03893	496	putative sialic acid transporter; Provisional	99.17
PRK09952	438	shikimate transporter; Provisional	99.16
PRK10504	471	putative transporter; Provisional	99.16
PLN00028	476	nitrate transmembrane transporter; Provisional	99.16
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.15
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.15
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.15
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.14
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.14
PRK12307	426	putative sialic acid transporter; Provisional	99.13
KOG3626	735	consensus Organic anion transporter [Secondary met	99.12
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.12
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.12
KOG2615	451	consensus Permease of the major facilitator superf	99.11
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.1
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.1
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.09
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.08
PRK09705	393	cynX putative cyanate transporter; Provisional	99.08
TIGR00805	633	oat sodium-independent organic anion transporter.	99.08
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.07
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.07
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.06
PRK11902	402	ampG muropeptide transporter; Reviewed	99.05
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.05
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.04
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.03
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.01
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.01
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.01
PRK10133	438	L-fucose transporter; Provisional	99.0
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.99
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.99
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.98
PRK09848	448	glucuronide transporter; Provisional	98.98
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.95
PRK15075	434	citrate-proton symporter; Provisional	98.94
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.94
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.94
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.92
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.92
TIGR00898	505	2A0119 cation transport protein.	98.92
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.91
TIGR00901	356	2A0125 AmpG-related permease.	98.91
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.9
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.9
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.85
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.84
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.83
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.83
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.83
PRK09669	444	putative symporter YagG; Provisional	98.78
KOG2532	466	consensus Permease of the major facilitator superf	98.76
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.73
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.72
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.68
PF13347	428	MFS_2: MFS/sugar transport protein	98.63
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.62
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.6
PRK10429	473	melibiose:sodium symporter; Provisional	98.57
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.53
KOG0569	485	consensus Permease of the major facilitator superf	98.53
PRK11462	460	putative transporter; Provisional	98.51
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.51
PTZ00207	591	hypothetical protein; Provisional	98.5
COG2211	467	MelB Na+/melibiose symporter and related transport	98.45
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.43
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.41
KOG2533	495	consensus Permease of the major facilitator superf	98.36
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.34
COG0477	338	ProP Permeases of the major facilitator superfamil	98.32
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.32
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.29
KOG0254	513	consensus Predicted transporter (major facilitator	98.28
KOG3762	618	consensus Predicted transporter [General function	98.27
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.24
KOG3810	433	consensus Micronutrient transporters (folate trans	98.21
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.2
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.2
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.13
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.08
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.07
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.02
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.93
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.84
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.82
PF12832	77	MFS_1_like: MFS_1 like family	97.59
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.58
PF12832	77	MFS_1_like: MFS_1 like family	97.4
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.4
KOG2563	480	consensus Permease of the major facilitator superf	97.35
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.34
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	97.26
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.25
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.2
COG3202	509	ATP/ADP translocase [Energy production and convers	97.19
KOG3880	409	consensus Predicted small molecule transporter inv	97.16
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.15
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.85
KOG3626	735	consensus Organic anion transporter [Secondary met	96.72
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.66
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.35
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.02
COG0477	338	ProP Permeases of the major facilitator superfamil	95.97
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	95.85
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.5
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.44
COG3202	509	ATP/ADP translocase [Energy production and convers	94.26
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	94.17
PRK03612	521	spermidine synthase; Provisional	93.6
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	93.37
KOG0637	498	consensus Sucrose transporter and related proteins	93.19
PRK03612	521	spermidine synthase; Provisional	93.02
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	90.68
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	90.23
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	88.86
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	87.77
KOG3097	390	consensus Predicted membrane protein [Function unk	86.09

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=100.00  E-value=3.1e-38  Score=291.08  Aligned_cols=392  Identities=34%  Similarity=0.521  Sum_probs=336.8

Q ss_pred             chhhhhhhccCCCHHHHHHHHHhhcccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            2 AVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         2 ~~~~~l~~~l~~s~~~~g~~~~~~~~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      ++.+|+++++|+|++|...+.++..+|+.++|++|.++|.+|++|++||++++++.++..++.+.++..+....+.....
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~   90 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV   90 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence            57899999999999999999999999999999999999999999999999999999999888877777765445677778


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      +..++..+|..+.++..++++.|..++++  +     .+|..++..+....+|.+++..++|.+.+..+++..|.+.+.+
T Consensus        91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p--~-----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~  163 (433)
T PF03092_consen   91 VLLFLASFGYAFADVAADALVVELARREP--E-----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAAL  163 (433)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcCC--c-----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHH
Confidence            88899999999999999999999998877  2     5899999999999999999999999999999999999999888


Q ss_pred             HHHHHHHhhhcccccccCCC-------CC-c---chhHHHHHHHHHHhcccchhHHHHH-HHHhhhcccccccce-eEEE
Q 015348          162 VVLQFFITIAVRESALKLPK-------SQ-S---NVGIRAQLSELSAALRKPEIMYSVA-WFAASYSIIPVLTGT-MFFY  228 (408)
Q Consensus       162 ~~~~~~~~~~~~e~~~~~~~-------~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~  228 (408)
                      ..+..+..++++|++.++++       ++ .   ....++..+++++.+++|.++...+ +.++ +......... ..++
T Consensus       164 ~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~a~~fy~  242 (433)
T PF03092_consen  164 PLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFF-FNLPPSISSASSFYF  242 (433)
T ss_pred             HHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHhccCCCCccEEEE
Confidence            88877666664443211110       00 0   0125677888999999999999888 5555 3333333334 6777


Q ss_pred             EEeccC---CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeeh
Q 015348          229 QTQNLK---IRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVL  305 (408)
Q Consensus       229 ~~~~~g---~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (408)
                      ..+..+   +|+...|.+..+..++.+++..+..++..+.+.|+++..+.++..+..+..+.++.+++..+|.++.++.+
T Consensus       243 ~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~l  322 (433)
T PF03092_consen  243 QTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFAL  322 (433)
T ss_pred             EeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEE
Confidence            777777   99999999999999999999999999999999999998888888777777777777887778899998888


Q ss_pred             hhhHHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHhhh
Q 015348          306 IFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCT  385 (408)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  385 (408)
                      ....+....++..++|...+.+|++|++.+|+.+|+..++.|+|..++..++..+.+.++.++..+.+++.+++++.++.
T Consensus       323 gd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~  402 (433)
T PF03092_consen  323 GDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQ  402 (433)
T ss_pred             EhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999999999999999999999999998888999999999999999


Q ss_pred             hhhhhhhhccCCCCCC
Q 015348          386 ILPLYWSYFMPDGVKS  401 (408)
Q Consensus       386 ~~~~~~~~~~~~~~~~  401 (408)
                      ++++.+...+|++++.
T Consensus       403 ll~l~ll~lLp~~~~~  418 (433)
T PF03092_consen  403 LLPLPLLFLLPPQKRI  418 (433)
T ss_pred             HHHHHHHHHcCCCchh
Confidence            9999998888875543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00788 fbt folate/biopterin transporter

Probab=100.00  E-value=2.1e-37  Score=289.48  Aligned_cols=386  Identities=28%  Similarity=0.418  Sum_probs=304.0

Q ss_pred             chhhhhhhccCCCHHHHHHHHHhhcccccccchheeecccccccCCcchhHHHHHHHHHH-HHHHHHHHhccCcchHHHH
Q 015348            2 AVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQA-VSWLAIAILSQSSISIFTM   80 (408)
Q Consensus         2 ~~~~~l~~~l~~s~~~~g~~~~~~~~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~   80 (408)
                      ++..++++++|+|+++++.+.++..+++.++|++|+++||+|..|++||++++++.++.. ++...++..+   ++....
T Consensus        47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~---~~~~~~  123 (468)
T TIGR00788        47 PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKV---SSAKVA  123 (468)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhccccc---chHHHH
Confidence            567899999999999999999999999999999999999999999999999999987763 4333333222   234445


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGL  160 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~  160 (408)
                      .+.+++.+++.+..+++.+++..|..+ +++ +     .++..++..+...++|.++|+.++|.+.+..+|+..|++.+.
T Consensus       124 ~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~-~-----~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~  196 (468)
T TIGR00788       124 AAFIFLAALAKALYDVLVDSLYSERIR-ESP-S-----AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAA  196 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC-C-----cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence            558899999999999999999999998 432 2     466778877778889999999999999999999999999988


Q ss_pred             HHHHHHHHhhhcccccc-cCCCCCcc-------------hhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeE
Q 015348          161 LVVLQFFITIAVRESAL-KLPKSQSN-------------VGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMF  226 (408)
Q Consensus       161 ~~~~~~~~~~~~~e~~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (408)
                      ..++..+...+++|++. ..++.+++             +..++..++.++.+++|.++..+++.++.+...........
T Consensus       197 l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f  276 (468)
T TIGR00788       197 LLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVF  276 (468)
T ss_pred             HHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeE
Confidence            88877666677888652 11110000             12344456677778999998877777663333344444444


Q ss_pred             EEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehh
Q 015348          227 FYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLI  306 (408)
Q Consensus       227 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (408)
                      .+..+.+|+++.+.|......+++.+++..+.+++.+|++.|+.+..+.++.++..+....+...++...+.++.++...
T Consensus       277 ~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~  356 (468)
T TIGR00788       277 CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLG  356 (468)
T ss_pred             EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeee
Confidence            46667799999999999999999999999999999999999999988888777765553333333333234445444444


Q ss_pred             hhHHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHhhhh
Q 015348          307 FSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTI  386 (408)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  386 (408)
                      ...+.........+|...++++.+|++.+|+.+|+.+++.++|..+++.++|.+.++.|.+.+++...+....++.+..+
T Consensus       357 ~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l  436 (468)
T TIGR00788       357 DSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPL  436 (468)
T ss_pred             hhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHH
Confidence            44444445566777889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCC
Q 015348          387 LPLYWSYFMPD  397 (408)
Q Consensus       387 ~~~~~~~~~~~  397 (408)
                      +++.+...+|+
T Consensus       437 ~~l~~~~llP~  447 (468)
T TIGR00788       437 LPLPLLHLLPR  447 (468)
T ss_pred             HHHHHHHhCCC
Confidence            99999888995

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.1e-34  Score=251.05  Aligned_cols=324  Identities=16%  Similarity=0.121  Sum_probs=265.9

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      .-+.+|+|+|..+.|+..+.+.+...+ .|+...+.||     ++||+.++....++.++.+++++++    |++.+++.
T Consensus        37 p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-----~~Rr~lLl~~l~lFi~~n~l~alAp----~f~~Ll~a  107 (394)
T COG2814          37 PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-----LERRRLLLGLLALFIVSNLLSALAP----SFAVLLLA  107 (394)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----cchHHHHHHHHHHHHHHHHHHHHhc----cHHHHHHH
Confidence            346789999999999999999988887 9999999999     9999999999999999999999999    99999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVV  163 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~  163 (408)
                      |++.|+..|...+...+...++.|+++         |+++.+....+.+++.++|.++|.++-+.+|||..|+..+.+.+
T Consensus       108 R~~~g~a~G~f~~i~~~~a~~lvpp~~---------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~l  178 (394)
T COG2814         108 RALAGLAHGVFWSIAAALAARLVPPGK---------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLAL  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCccc---------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999999999999999999999875         99999999999999999999999999999999999999999998


Q ss_pred             HHHHHhh-hcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHH
Q 015348          164 LQFFITI-AVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGI  242 (408)
Q Consensus       164 ~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~  242 (408)
                      +..+..+ .+| +++.+++      .+...++..+.+|+|.++...+..++........+++..++..+..|+|.+..++
T Consensus       179 l~~~~~~~~lP-~~~~~~~------~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~  251 (394)
T COG2814         179 LALLLLWKLLP-PSEISGS------LPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSL  251 (394)
T ss_pred             HHHHHHHHhCC-CccCCCC------CCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHH
Confidence            8876544 488 1111111      1122334456699999999999888877777788888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH
Q 015348          243 SKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF  322 (408)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (408)
                      ....++++.++|+.+.||+.|| +.|+.+.....+.++..+...+          .+...+......+..++..   .|.
T Consensus       252 ~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~----------~~~~~~~~~~~~~~wg~a~---~~~  317 (394)
T COG2814         252 VLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF----------TGASPALALALLFLWGFAF---SPA  317 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHH----------hcchHHHHHHHHHHHHHHh---hhh
Confidence            9999999999999999999999 8788777766666555444221          1111112222223333332   333


Q ss_pred             -HHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          323 -SVYIAQVCP--PGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       323 -~~~~~~~~p--~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                       +.+..+..+  ||.+..+.+++.+..|+|..+|..++|.+.|+.|+.
T Consensus       318 ~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~  365 (394)
T COG2814         318 LQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYA  365 (394)
T ss_pred             hhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence             445555544  588899999999999999999999999999997764

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=7.1e-34  Score=262.07  Aligned_cols=324  Identities=12%  Similarity=0.058  Sum_probs=246.6

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      ..+++|+|.|+++.|+..+...+.+.+ ++++|.++||     +|||+++..+..+..++.+.+.+.+    +++.+++.
T Consensus        33 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~  103 (390)
T PRK03545         33 SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-----VERRKLLIGLFVLFIASHVLSALAW----NFTVLLIS  103 (390)
T ss_pred             HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHHHHHHHHHhc----cHHHHHHH
Confidence            356789999999999999999877766 8999999999     9999999999999999999999998    99999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVV  163 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~  163 (408)
                      |++.|++.+...+...+++.|+.|+++         |++++++...+.++|..+||.+++.+.+..|||+.|++.+++++
T Consensus       104 r~~~G~~~~~~~~~~~~~i~~~~~~~~---------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~  174 (390)
T PRK03545        104 RIGIAFAHAIFWSITASLAIRVAPAGK---------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGAL  174 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhh---------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHH
Confidence            999999999988888899999998754         99999999999999999999999999999999999999988877


Q ss_pred             HHHHHhhh-cccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHH
Q 015348          164 LQFFITIA-VRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGI  242 (408)
Q Consensus       164 ~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~  242 (408)
                      +..+..+. +||++++++     +    ..++.++.+|||.++......++............+++..+..|.+..+.+.
T Consensus       175 l~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~  245 (390)
T PRK03545        175 ITLLLLIKLLPLLPSEHS-----G----SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATL  245 (390)
T ss_pred             HHHHHHHHhCCCCCCCCc-----c----hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHH
Confidence            76554433 565432211     1    1233455688888776554443322222222334455566668899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH
Q 015348          243 SKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF  322 (408)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (408)
                      ......++.+++.++.+++.||+++|+.. .+.............          .....+......+..+++.....+.
T Consensus       246 ~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~l~g~~~~~~~~~  314 (390)
T PRK03545        246 LLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLP----------AANSEWHLSVLSIFWGIAIMCIGLA  314 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHH----------HhchHHHHHHHHHHHHHHHhcchHH
Confidence            99889999999999999999999876543 333333332222111          1112223334455555555444454


Q ss_pred             -HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          323 -SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       323 -~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                       ...+.+..| +.+++++|+++...++|..+||.++|.+.|+.|..
T Consensus       315 ~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~  359 (390)
T PRK03545        315 MQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLS  359 (390)
T ss_pred             HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence             667777766 67899999999999999999999999999998864

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=100.00  E-value=4.7e-32  Score=254.13  Aligned_cols=376  Identities=15%  Similarity=0.180  Sum_probs=264.1

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCc--chHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSS--ISIFT   79 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~   79 (408)
                      +++|+++++|+|+.++|++.++..+...+ +|+.|+++||++.|+.+|||+++.+....+++.+++...+...  ...+.
T Consensus        22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY  101 (437)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            46788899999999999999999966555 9999999999988777778999999998888888887765321  13566


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh-------cCChh
Q 015348           80 MSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID-------RFSPP  152 (408)
Q Consensus        80 ~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~-------~~g~~  152 (408)
                      +++.+++.+++.+...++..++..|..++++        +|++..++.+....+|..+++.+.+.+..       ..+||
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--------~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~  173 (437)
T TIGR00792       102 AYITYILLGLFYSFVNIPYWSLVPAITLDPR--------ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF  173 (437)
T ss_pred             HHHHHHHHHHHHHhhcccHhhCcccccCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence            7778888999999988888899999887654        59999999888888988887776665542       46899


Q ss_pred             hHHHHHHHHHHHHHHHh-hhcccccccCCCC-CcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEE
Q 015348          153 SMFLFFGLLVVLQFFIT-IAVRESALKLPKS-QSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQT  230 (408)
Q Consensus       153 ~~f~i~~~~~~~~~~~~-~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (408)
                      ..+.+.+++.++..+.. +..||++++.+++ +++.+.++.   .++.++||.++..++..++............++|.+
T Consensus       174 ~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (437)
T TIGR00792       174 MFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQI---FKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFT  250 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHH---HHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEe
Confidence            99999888877776554 4477765321111 112223333   344588999888776666544444333444555665


Q ss_pred             eccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHH
Q 015348          231 QNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSL  310 (408)
Q Consensus       231 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (408)
                      +.++ ++...+.+.....++.+++.++.+++.||+++|+.+..+..+..+..+...+        .  ++..+.......
T Consensus       251 ~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~~~~~~~  319 (437)
T TIGR00792       251 YVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF--------A--GSNLPLILVLII  319 (437)
T ss_pred             eecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--------c--chhHHHHHHHHH
Confidence            5566 5666777777788999999999999999999999888776665554433221        0  011112233334


Q ss_pred             HHHHHHHhhhhH-HHHHHHhcC-------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-------hH
Q 015348          311 LEVMFFFKILPF-SVYIAQVCP-------PGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSG-------LP  375 (408)
Q Consensus       311 ~~~~~~~~~~~~-~~~~~~~~p-------~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~-------~~  375 (408)
                      ..+++.....+. +++.+|.+|       ++.+|+.+|+.+...+++..+++.+.|.+.+..|+....-..       ..
T Consensus       320 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~~~  399 (437)
T TIGR00792       320 LAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGIKI  399 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHHHH
Confidence            445554444455 777777765       567899999999999999999999999999998875421110       12


Q ss_pred             HHHHHHHhhhhhhhhhhh-ccCCCCC
Q 015348          376 LALIIQAVCTILPLYWSY-FMPDGVK  400 (408)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~-~~~~~~~  400 (408)
                      ....+.+++.++++...+ +.|.+++
T Consensus       400 ~~~~~p~i~~~~~~~~~~~~y~l~~~  425 (437)
T TIGR00792       400 LMFAVPALFLLLAAIIIGRFYKLTEK  425 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHeeCcHH
Confidence            233444455555555554 6665443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=2.5e-32  Score=254.03  Aligned_cols=335  Identities=10%  Similarity=-0.005  Sum_probs=247.3

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhc-cCcchHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILS-QSSISIFTM   80 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~   80 (408)
                      ++.+. ++++.|+.+.|++.+...++..+ +++.|+++||     +|||+.+..+.++.+++...+.... ....+++.+
T Consensus        40 ~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-----~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  113 (417)
T PRK10489         40 VPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-----YDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAI  113 (417)
T ss_pred             HHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-----cCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence            34444 67788999999999999988877 9999999999     9999999888877777665544210 012278888


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGL  160 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~  160 (408)
                      ++.|++.|++.+...++..+.+.|+.|++         +|++++++.+...++|..+||.+++.+.+..+|++.|++.++
T Consensus       114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~  184 (417)
T PRK10489        114 YLLGLWDGFFGSLGVTALLAATPALVGRE---------NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAA  184 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCHH---------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999999998888889999998875         389999999999999999999999999998899999998887


Q ss_pred             HHHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhH
Q 015348          161 LVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVL  240 (408)
Q Consensus       161 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  240 (408)
                      ..++..+..+.+||++++++++  ++..++..+..+..+++|.++...+..++... ........+.|..+.+|.++...
T Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~  261 (417)
T PRK10489        185 GTFITLLPLLRLPALPPPPQPR--EHPLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQI  261 (417)
T ss_pred             HHHHHHHHHHhCCCCCCCCccc--ccchHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHh
Confidence            7777666666677754332221  11122222334445778876665544443222 22334455666666689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhh
Q 015348          241 GISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKIL  320 (408)
Q Consensus       241 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (408)
                      |++.....++.+++.++.+++.||.++++.+..+.....+..+...           ..+.++......+..+++.....
T Consensus       262 g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~  330 (417)
T PRK10489        262 GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG-----------LMPMWILAVLCLALFGYLSAISS  330 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH-----------ccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987777666666554444433211           11222223334444555555445


Q ss_pred             hH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          321 PF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       321 ~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      +. .+++++..|++.||+++|+++...++|..+||.+.|.+.|..|.
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~  377 (417)
T PRK10489        331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTP  377 (417)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch
Confidence            55 67889999999999999999999999999999999999998775

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=2.6e-32  Score=249.82  Aligned_cols=338  Identities=13%  Similarity=0.114  Sum_probs=254.7

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhcc-CcchHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQ-SSISIFTM   80 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~   80 (408)
                      ++.|. ++++.|+.+.+++.+...++..+ +|++|+++||     +|||+.+..+.++..++..+..+.+. ...+++.+
T Consensus        22 ~~~~~-~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (365)
T TIGR00900        22 LPLYV-LAGTGSASVLSLAALAGMLPYVVLSPIAGALADR-----YDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQV   95 (365)
T ss_pred             HHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-----hchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence            44555 56899999999999999988777 9999999999     99999999998887777776655431 12378899


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGL  160 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~  160 (408)
                      ++.|++.|++.+...+..++++.|+.|+++         |++.+++.+...++|.++||.+++.+.+..|||+.|++.++
T Consensus        96 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~  166 (365)
T TIGR00900        96 YVLAGILAIAQAFFTPAYQAMLPDLVPEEQ---------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAV  166 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999999999999999999998764         99999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHhhhcccccccC--CCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhccccccc-ceeEEEEEeccCCCh
Q 015348          161 LVVLQFFITIAVRESALKL--PKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLT-GTMFFYQTQNLKIRS  237 (408)
Q Consensus       161 ~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~  237 (408)
                      ..++..+..+.++++++++  +++.+++..++..+..++.+|+|.++......++......... ...+++..+.+|.++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (365)
T TIGR00900       167 GFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGS  246 (365)
T ss_pred             HHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch
Confidence            7666655444433322221  1111111122333445556788888877666555333333333 445555555689999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHH
Q 015348          238 SVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFF  317 (408)
Q Consensus       238 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
                      .+.+.......++.+++.++.+++.||.++++.+..+....++.......         . +++.+......+..+++..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~g~~~~  316 (365)
T TIGR00900       247 THYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGL---------T-PPNFPLFLVLWFAIGVGYG  316 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHh---------h-chhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888777665544444333211         0 1112233444555666665


Q ss_pred             hhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          318 KILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       318 ~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      ...|. .++..|..|+++||++.|+.++..+++..++|.++|.+.|..|
T Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       317 PINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            55666 8899999999999999999999999999999999999998764

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.4e-33  Score=242.40  Aligned_cols=335  Identities=14%  Similarity=0.095  Sum_probs=264.2

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      .++.+|.++|.+|+|++.+...+.|-+ +.+.|.++||     .+.|..+..++++.++..+++++++    +.+.+.++
T Consensus        53 p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-----~npr~fm~~gLilsai~nil~Gfs~----s~~~~~~l  123 (448)
T COG2271          53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-----SNPRYFMAFGLILSAIVNILFGFSP----SLFLFAVL  123 (448)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-----CCCceeehHHHHHHHHHHHHHhhhh----HHHHHHHH
Confidence            456788999999999999999999988 9999999999     9999999999999999999999999    99999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHH--HHHhhcCChhhHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLV--GFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~--~~l~~~~g~~~~f~i~~~~  161 (408)
                      .++.|...+...|++...+..+.+++|         ||+..++++.+.++|..+.|++.  +++..+.+||..|++.+++
T Consensus       124 ~~lng~fQg~Gwpp~~~~i~~Wfsr~e---------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgii  194 (448)
T COG2271         124 WVLNGWFQGMGWPPCARTITHWFSRKE---------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGII  194 (448)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHcCccc---------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            999999999999999999999999874         99999999999999999999999  8998889999999999999


Q ss_pred             HHHHHHHhhh-cccccccCC----------CCC--cch------hHHHHHHHHHHhcccchhHHHHHHHHhhhccccccc
Q 015348          162 VVLQFFITIA-VRESALKLP----------KSQ--SNV------GIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLT  222 (408)
Q Consensus       162 ~~~~~~~~~~-~~e~~~~~~----------~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (408)
                      .++..++.++ .+++|++..          +.+  +++      +.++.+  .+.+++||.+|.+.+..++.+..-....
T Consensus       195 aiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~--~~YVL~Nk~iW~la~a~vfvYivR~gi~  272 (448)
T COG2271         195 AIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIF--VKYVLKNKLIWLLALANVFVYVVRYGIN  272 (448)
T ss_pred             HHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHH--HHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence            8887666554 776654311          000  000      011111  2345899999999999988899999999


Q ss_pred             ceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC--CCceehHHHHHHHHHHHHHhHhhhcccccccCcCc
Q 015348          223 GTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSV--SPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPD  300 (408)
Q Consensus       223 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (408)
                      ++.|.|+.|..|+|.....+.....-.++++|.++.|+++||.  |+|........+.....+...+        .....
T Consensus       273 dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w--------~~~~~  344 (448)
T COG2271         273 DWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYW--------LAPNG  344 (448)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------cCCCc
Confidence            9999999999999999999999999999999999999999996  4554443333322222222222        11112


Q ss_pred             eEeehhhhHHHHHHH-HHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCC
Q 015348          301 SLYVLIFSSLLEVMF-FFKILPFSVYIAQVCPPGCEGSIMAFVMSAVAL-AFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       301 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~ig~~~~g~l~~~~g~~  367 (408)
                      +.++.....+..|+. .+..+-+-....|..|++..|++.|+...+..+ |...+....|++.|.+|.+
T Consensus       345 ~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~  413 (448)
T COG2271         345 SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWD  413 (448)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCc
Confidence            222222222222222 122222345678999999999999999999998 8889989999998886654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=4.5e-32  Score=251.72  Aligned_cols=330  Identities=14%  Similarity=0.092  Sum_probs=239.5

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      .+.+++|.|+++.+++.+...++..+ .++.|+++||     +|||+.+..+.++..++.+++.+.+    +++.+++.|
T Consensus        40 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  110 (406)
T PRK11551         40 RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-----IGRKRILIVSVALFGLFSLATAQAW----DFPSLLVAR  110 (406)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCchhHHHHHHHHHHHHHHHHHhc----cHHHHHHHH
Confidence            45688999999999999999988777 8999999999     9999999999988888888888888    999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVL  164 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~  164 (408)
                      ++.|++.+...+...+++.|+.|++         +|++.+++.+....+|..+++.+++.+.+..+||+.|++.++..++
T Consensus       111 ~l~G~~~~~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (406)
T PRK11551        111 LLTGVGLGGALPNLIALTSEAVGPR---------LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLL  181 (406)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999875         3999999999999999999999999888889999999998776665


Q ss_pred             HHHH-hhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHH
Q 015348          165 QFFI-TIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGIS  243 (408)
Q Consensus       165 ~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  243 (408)
                      ..+. ..++||+++++++++++++.++..+..++..+++..+......+...........+.+.+.. +.|+++.+.+..
T Consensus       182 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~  260 (406)
T PRK11551        182 LVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLV  260 (406)
T ss_pred             HHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCChhhhhHH
Confidence            5443 34478765432221111111111122211112222222222222211122222233344443 478999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-
Q 015348          244 KVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-  322 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  322 (408)
                      .....++.+++.++.+++.||+++|+.+..+.+...+.......          . ...+......+..++......+. 
T Consensus       261 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~g~~~~~~~~~~  329 (406)
T PRK11551        261 QIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA----------A-PSFAGMLLAGFAAGLFVVGGQSVL  329 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh----------c-CcHHHHHHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999999988877654444433322111          1 11112223333444444334455 


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          323 SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       323 ~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      .++..|..|+++||+..|+.++..+++..++|.++|.+.++.+
T Consensus       330 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  372 (406)
T PRK11551        330 YALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR  372 (406)
T ss_pred             HHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC
Confidence            7888999999999999999999999999999999999988643

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=100.00  E-value=3.1e-31  Score=245.31  Aligned_cols=370  Identities=11%  Similarity=0.081  Sum_probs=247.6

Q ss_pred             chhhhhhhccCCCHHHHHHHHHhhcccccccchheeecccccccCCcch-hHHHHHHHHHHHHHHHHHHhccCcchHHHH
Q 015348            2 AVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRV-PYIAIGAFLQAVSWLAIAILSQSSISIFTM   80 (408)
Q Consensus         2 ~~~~~l~~~l~~s~~~~g~~~~~~~~~~~~~~~~G~l~Dr~~~~~~grk-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (408)
                      +++.|++ +.|+|.+|+|++..+.. +++++|++|+++||++.++.||| +++..+.+..+++...+++.+. ..+++.+
T Consensus        21 ~~~~~l~-~~g~~~~~ig~~~~~~~-~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~-~~~~~~l   97 (402)
T PRK11902         21 TLQAWMT-VEGLDIQTIGFFSLVGQ-AYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPP-HAALWPL   97 (402)
T ss_pred             HHHHHHH-HcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCc-cchHHHH
Confidence            4677886 55999999999955544 67789999999999544333665 5888888888888888777642 2367778


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-CChhhHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR-FSPPSMFLFFG  159 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~-~g~~~~f~i~~  159 (408)
                      ++..++.++..+..+++.++++.|+.|+++         |++++++...+.++|.++++.+++.+.+. .|||..|++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~---------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a  168 (402)
T PRK11902         98 AGLAVLVAFLSASQDIVFDAYSTDVLHPEE---------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMA  168 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChhh---------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHH
Confidence            888888899999999999999999988754         99999999999999999999999999885 59999999998


Q ss_pred             HHHHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhh
Q 015348          160 LLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSV  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  239 (408)
                      +..++..+..+++||+++++++++  +..++..++.++.+|||.++..++..++............+++..++.|+++++
T Consensus       169 ~~~l~~~l~~~~~~e~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~  246 (402)
T PRK11902        169 GLMLAGALTTLWAPEPEVPARPPR--SLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGE  246 (402)
T ss_pred             HHHHHHHHHHHhcCCCcccccccc--hhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHH
Confidence            887766665556777654322211  111223344556689998877666554423221111122233455668999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHH-HHHH
Q 015348          240 LGISKVFG-QAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEV-MFFF  317 (408)
Q Consensus       240 ~g~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  317 (408)
                      .++..... .++.+++..+.+++.||+++|+.+..+.....+..+....+.      . .++..+.+........ ....
T Consensus       247 ~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~------~-~~~~~~~~~~~~~~~~~~~g~  319 (402)
T PRK11902        247 VGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLA------V-TPKHLWTMALAIGIENLCGGM  319 (402)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------h-cCCcHHHHHHHHHHHHHHHHH
Confidence            99887554 456889999999999999988877655555443322211100      0 0112112222222111 1122


Q ss_pred             hhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHhhhhhhhhhhhccCC
Q 015348          318 KILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPD  397 (408)
Q Consensus       318 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (408)
                      ...+..+.....++++..++.+++.++..+++..+++.++|.+.|.+|+.        ..+.+.+++.++.+...++.++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~--------~~f~~~~~~~~~~~~~~~~~~~  391 (402)
T PRK11902        320 GTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWP--------GFYLMTVVIALPGLALLWLMRG  391 (402)
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--------HHHHHHHHHHHHHHHHHHHHhh
Confidence            22233555566666666677778888888888887788999999998853        2333444444444555555554


Q ss_pred             CCC
Q 015348          398 GVK  400 (408)
Q Consensus       398 ~~~  400 (408)
                      +-+
T Consensus       392 ~~~  394 (402)
T PRK11902        392 TIG  394 (402)
T ss_pred             hcc
Confidence            433

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.1e-31  Score=250.39  Aligned_cols=334  Identities=15%  Similarity=0.125  Sum_probs=239.2

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      .+.+++|+|+.+.|++.+...+++.+ +++.|+++||     +|||+++.++.++.+++.+++.+.+    +++.+++.|
T Consensus        48 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~  118 (434)
T PRK11663         48 EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-----SNARYFMGIGLIATGIINILFGFSS----SLWAFALLW  118 (434)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-----cCCchhHHHHHHHHHHHHHHHHHHh----HHHHHHHHH
Confidence            34578999999999999999988777 9999999999     9999999999999999999999988    999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVL  164 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~  164 (408)
                      ++.|++.+...+...+++.|+.|++         +|++.+++.+...++|.++++.+++.+.+.+|||+.|.+.+++.++
T Consensus       119 ~l~g~~~g~~~~~~~~~~~~~~~~~---------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~  189 (434)
T PRK11663        119 VLNAFFQGWGWPVCAKLLTAWYSRT---------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIV  189 (434)
T ss_pred             HHHHHHHHccchHHHHHHHHhCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            9999999988888889999999875         3999999999999999999999999999999999999998877665


Q ss_pred             HHH-HhhhcccccccCC--C----C-C--c--chh--HHHHHHHHH--HhcccchhHHHHHHHHhhhcccccccceeEEE
Q 015348          165 QFF-ITIAVRESALKLP--K----S-Q--S--NVG--IRAQLSELS--AALRKPEIMYSVAWFAASYSIIPVLTGTMFFY  228 (408)
Q Consensus       165 ~~~-~~~~~~e~~~~~~--~----~-~--~--~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (408)
                      ..+ ..+++||++++..  +    + +  +  +++  .+...++..  ..+++|.++...+..++..........+.+.|
T Consensus       190 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  269 (434)
T PRK11663        190 VGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLY  269 (434)
T ss_pred             HHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            543 3344676543210  0    0 0  0  000  000112221  24677887776665555344444445566677


Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCC--CceehHHHHH-HHHHHHHHhHhhhcccccccCcCceEeeh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVS--PRKLISAIQA-MMAVFMISDVLFVKGVYREMGVPDSLYVL  305 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (408)
                      ..++.|++..+.+.......++++++.++.|++.||+.  +|+....... ...........        ....+.. ..
T Consensus       270 l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~  340 (434)
T PRK11663        270 MSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL--------MPFASYV-MQ  340 (434)
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH--------cccccHH-HH
Confidence            76778999999999989999999999999999999983  3333222111 11111111111        0011111 11


Q ss_pred             hhhHHHHHHHHHhhh-hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          306 IFSSLLEVMFFFKIL-PFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       306 ~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ....+..++...... .......|..|++.+|++.|+.++..++|..++|.+.|++.|+.|+
T Consensus       341 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~  402 (434)
T PRK11663        341 AACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHW  402 (434)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhccc
Confidence            111122222111111 1244567889999999999999999999999999999999998774

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=4.8e-31  Score=242.94  Aligned_cols=322  Identities=13%  Similarity=0.086  Sum_probs=239.7

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      ..+++|+|+|+++.|++.+.+.+.+.+ +++.|+++||     +|||+++..+..+.+++.+.+++++    +++.+++.
T Consensus        33 p~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-----~G~r~~l~~~~~l~~~~~~~~~~a~----~~~~ll~~  103 (393)
T PRK09705         33 PQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-----VSERRSVAISLLLIAVGALMRELYP----QSALLLSS  103 (393)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-----hCchHHHHHHHHHHHHHHHHHHHCc----chHHHHHH
Confidence            357789999999999999999988777 9999999999     9999999999999999999999999    99999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhhHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRF-SPPSMFLFFGLLV  162 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~-g~~~~f~i~~~~~  162 (408)
                      |+++|++.+...+...+.+.++.| +         +|+++++....+.+.|..+|+.+++++.++. +||..+.+.++..
T Consensus       104 r~l~Gig~~~~~~~~~~~~~~~~~-~---------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~  173 (393)
T PRK09705        104 ALLGGVGIGIIQAVMPSVIKRRFQ-Q---------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPA  173 (393)
T ss_pred             HHHHHhHHHHHhhhhhHHHHHHcc-c---------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999999888888888875 3         4899999999999999999999999988875 8999887766655


Q ss_pred             HHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHH
Q 015348          163 VLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGI  242 (408)
Q Consensus       163 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~  242 (408)
                      ++.....+...+++++++++ ++.       +.++.+++|..+...+..++..........+.+.+..+ .|.+..+.|.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~  244 (393)
T PRK09705        174 VVALFAWWWQSAREVASSHK-TTT-------TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGS  244 (393)
T ss_pred             HHHHHHHHHHhcCCCccccC-CCc-------CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhH
Confidence            44433333332221111111 100       11233567777666555544344444445556666654 7999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH
Q 015348          243 SKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF  322 (408)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (408)
                      ......++.+++.++.+++.||.++|+....+..+..+.......        ... +.. ...  ....+++.+...|.
T Consensus       245 ~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~--------~~~-~~~-~~~--~~l~g~g~g~~~~~  312 (393)
T PRK09705        245 LLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW--------LPL-QLP-VLW--AMVCGLGLGGAFPL  312 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH--------ccc-hHH-HHH--HHHHHHhccchHHH
Confidence            999999999999999999999999988877776555444333211        000 110 111  12234444444454


Q ss_pred             -HHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          323 -SVYIAQVCP-PGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       323 -~~~~~~~~p-~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                       .....+..+ ++++|+.+|+.+...+++..++|.+.|++.|..|.
T Consensus       313 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~  358 (393)
T PRK09705        313 CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN  358 (393)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             445556664 67899999999999999999999999999999873

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=3.1e-31  Score=243.61  Aligned_cols=329  Identities=18%  Similarity=0.177  Sum_probs=232.9

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHH-HHHHHHHHHHHHHHHhccCcchHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIA-IGAFLQAVSWLAIAILSQSSISIFTM   80 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (408)
                      ++.|+++++|.|+.+.|++.+...+...+ +|++|.++||     +||||.++ .+.....++.+++++++    +++.+
T Consensus        20 l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-----~g~r~~~~~~~~~~~~~~~~~~~~~~----~~~~l   90 (375)
T TIGR00899        20 LSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-----QGDRKGLILFCCLLAALACLLFAWNR----NYFLL   90 (375)
T ss_pred             HHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCchHHHHHHHHHHHHHHHHHHhcc----hHHHH
Confidence            56688899999999999999998865554 9999999999     99887655 45555566667777777    89998


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGL  160 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~  160 (408)
                      ++.|++.|.+.+...+..+++..|..|+++  +     .++...+......++|.++||.+++.+.+..|||+.|++.++
T Consensus        91 ~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~  163 (375)
T TIGR00899        91 LVLGVLLSSFASTANPQLFALAREHADRTG--R-----EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAAL  163 (375)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHhhhcc--h-----hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHH
Confidence            999999888888788888788888876543  1     233336777778899999999999999999999999999988


Q ss_pred             HHHHHHHHhh-hcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhh
Q 015348          161 LVVLQFFITI-AVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSV  239 (408)
Q Consensus       161 ~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  239 (408)
                      ..++..+..+ ++||++++++++++    ++   +.++.+++|+++......++.+..........+.|..+++|.++.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  236 (375)
T TIGR00899       164 AFVLCGVLVWLFLPSYPRGAPGALT----RL---EVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKL  236 (375)
T ss_pred             HHHHHHHHHHHhCCCcccCcccccC----cc---hhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHH
Confidence            7776655544 47876543322111    11   1222466776665544444323322223344555666778999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhh
Q 015348          240 LGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKI  319 (408)
Q Consensus       240 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (408)
                      .+..........+++..+.+++.||+++|+.+..+.+...........           .++.+.........+++.+..
T Consensus       237 ~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~g~~  305 (375)
T TIGR00899       237 AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA-----------DNSLWALLMLQLLNAIFIGIL  305 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence            998887777778888899999999999998877665543333222110           011112223333444444444


Q ss_pred             hhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          320 LPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       320 ~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .|. ..+.+|..|+ ++++++|+.+...++|..++|.+.|.+.|..|+
T Consensus       306 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~  352 (375)
T TIGR00899       306 AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSY  352 (375)
T ss_pred             HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            455 6777888875 567999999999999999999999999998764

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=4e-31  Score=242.95  Aligned_cols=332  Identities=15%  Similarity=0.134  Sum_probs=246.3

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      ..++++++|+|+++.|++.+...++..+ +|++|.++||     +|||+.+..+.++.+++.+.+.+.+    +++.+++
T Consensus        26 ~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-----~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~   96 (377)
T TIGR00890        26 APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-----FGPRAVAMLGGILYGLGFTFYAIAD----SLAALYL   96 (377)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-----cCccchhHHhHHHHHHHHHHHHHHH----HHHHHHH
Confidence            4567889999999999999999988877 9999999999     9999999999999999999999999    9999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLV  162 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~  162 (408)
                      .|.+.|++.+...+.....+.++.|+          +|+++.+....+.++|..+++.+.+.+.+..|||+.|++.++..
T Consensus        97 ~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~  166 (377)
T TIGR00890        97 TYGLASAGVGIAYGIALNTAVKWFPD----------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIF  166 (377)
T ss_pred             HHHHHhHHHHHHHHhHHHHHHHHcCc----------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            99999999998877776777777753          48999999999999998887777777778889999999999888


Q ss_pred             HHHHHHhh-hcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHH
Q 015348          163 VLQFFITI-AVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLG  241 (408)
Q Consensus       163 ~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  241 (408)
                      ++..+..+ +++|+++++++++++.+  +..++.++.+|+|.++...+..+.............++| .+++|.+..+.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  243 (377)
T TIGR00890       167 LLVIVLGAFLIGYPPGQLIKTNIEVS--VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPY-GQSLGLSDGFLV  243 (377)
T ss_pred             HHHHHHHHHheecCchhccccCcccc--hhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHH-HHHcCCCHHHHH
Confidence            77765544 45554433221111111  111233456788887766555444222222222223333 345788888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhh
Q 015348          242 ISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILP  321 (408)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (408)
                      .......++.+++.++.+++.||+++|+.+..+.....+..+....         ................++..+...+
T Consensus       244 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~g~~~~  314 (377)
T TIGR00890       244 LAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLF---------IPMLNDVLFLATVALVFFTWGGTIS  314 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH---------cccchhHHHHHHHHHHHHHhccchh
Confidence            9999999999999999999999999999887776666555443221         0000111111222333343333334


Q ss_pred             H-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          322 F-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       322 ~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      . ..+..|..|+++|++.+|+.+...++|..++|.+.|.+.+..|+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  360 (377)
T TIGR00890       315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGF  360 (377)
T ss_pred             ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence            4 67888999999999999999999999999999999999988764

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=7.2e-31  Score=241.58  Aligned_cols=322  Identities=12%  Similarity=0.020  Sum_probs=240.5

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      .+.+++|.|+++.|+..+...+...+ +|+.|.++||     +|||+.+..+.++.+++.+++.+.+    +++.+++.|
T Consensus        45 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-----~grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r  115 (394)
T PRK10213         45 PMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-----TDRRYVVILFAVLLTLSCLLVSFAN----SFSLLLIGR  115 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCcHHHHHHHHHHHHHHHHHHHHHC----hHHHHHHHH
Confidence            35689999999999999998876666 9999999999     9999999999999999999988888    999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVL  164 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~  164 (408)
                      ++.|++.+...+...+++.|+.|++         +|+++++......++|.++||.+++.+.+.+|||+.|++.+++.++
T Consensus       116 ~l~G~~~g~~~~~~~~~i~~~~~~~---------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~  186 (394)
T PRK10213        116 ACLGLALGGFWAMSASLTMRLVPPR---------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVL  186 (394)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999875         3999999999999999999999999999999999999998877665


Q ss_pred             HHHHhh-hcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHH
Q 015348          165 QFFITI-AVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGIS  243 (408)
Q Consensus       165 ~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  243 (408)
                      ..+... ..||+++++++      .++   +.++.+|+|.++...+..++............++++.++.|+++...+..
T Consensus       187 ~~l~~~~~~p~~~~~~~~------~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~  257 (394)
T PRK10213        187 CIFWIIKSLPSLPGEPSH------QKQ---NTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLV  257 (394)
T ss_pred             HHHHHHHHCCCCCccccc------chh---HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Confidence            544433 35664322111      111   22345788888876555444233222223333344455679999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-
Q 015348          244 KVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-  322 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  322 (408)
                      ....+++.+++..+.+++.||.+ |+.+..+.............          ..+..+......+..+++.....+. 
T Consensus       258 ~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~l~G~~~~~~~~~~  326 (394)
T PRK10213        258 LLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTL----------WGSDKIVATGVAIIWGLTFALVPVGW  326 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHH----------HhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999999954 44333333332222211111          0111223334455556666555565 


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          323 SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       323 ~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .+.+++..| +++++..+......++|..+|+.++|.+.|..|.
T Consensus       327 ~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~  369 (394)
T PRK10213        327 STWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGL  369 (394)
T ss_pred             HHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            668888887 5567888888888999999999999999998764

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=3.6e-31  Score=245.75  Aligned_cols=333  Identities=13%  Similarity=0.127  Sum_probs=240.4

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      ..+++++|.|+.+.+++.+...++..+ +++.|.++||     +|||+.+..+.++..++.+++.+.+    +++.+++.
T Consensus        36 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~  106 (405)
T TIGR00891        36 AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-----YGRRLPMVTSIVLFSAGTLACGFAP----GYITMFIA  106 (405)
T ss_pred             HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHHhc----cHHHHHHH
Confidence            356789999999999999999987777 9999999999     9999999999999999999998888    99999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhhHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS--PPSMFLFFGLL  161 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g--~~~~f~i~~~~  161 (408)
                      |++.|++.+...+...+++.|+.|+++         |++++++.+....+|.++++.+++.+.+..+  ||+.|.+.++.
T Consensus       107 ~~l~G~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~  177 (405)
T TIGR00891       107 RLVIGIGMGGEYGSSAAYVIESWPKHL---------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILP  177 (405)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHhCChhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence            999999999999999999999998754         9999999999999999999999999988766  99999887666


Q ss_pred             HHHHHHHhhhcccccccCCCCCcchhHHHHHHH------------------HHHhcccc-h-hHHHHHHHHhhhcccccc
Q 015348          162 VVLQFFITIAVRESALKLPKSQSNVGIRAQLSE------------------LSAALRKP-E-IMYSVAWFAASYSIIPVL  221 (408)
Q Consensus       162 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~-~-~~~~~~~~~~~~~~~~~~  221 (408)
                      .++..+....+||+++.++++++++..++..++                  .++..+++ . +........+........
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (405)
T TIGR00891       178 IIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPI  257 (405)
T ss_pred             HHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            655555555577764322111110000000000                  00000000 0 111111111112222233


Q ss_pred             cceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCce
Q 015348          222 TGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDS  301 (408)
Q Consensus       222 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (408)
                      ....+.|..++.|++..+.+.+.....++.+++.++.+++.||+++|+.+..+.............          ....
T Consensus       258 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~----------~~~~  327 (405)
T TIGR00891       258 QDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA----------IGAN  327 (405)
T ss_pred             hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH----------hCCc
Confidence            345566666778999999999999999999999999999999999999887666544332222111          1111


Q ss_pred             EeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          302 LYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      .+.........+.......+. ..+++|..|+++||+++|+.+...+++..++|.+.|.+.|+.|
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       328 VAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             hHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            112222222223332223333 6788999999999999999999999999999999999999988

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=8.5e-32  Score=253.62  Aligned_cols=334  Identities=14%  Similarity=0.105  Sum_probs=238.9

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhc-cCcchHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILS-QSSISIFTMSLF   83 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   83 (408)
                      .+++|+|+|+.+.|++.+.+.+++.+ +++.|+++||     +|||+++..+.++.++..+.++... ....+++.+++.
T Consensus        54 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-----~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  128 (467)
T PRK09556         54 DMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-----KNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIAL  128 (467)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-----cCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            46789999999999999999988877 9999999999     9999999888888777776665420 011289999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC---ChhhHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRF---SPPSMFLFFGL  160 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~---g~~~~f~i~~~  160 (408)
                      |++.|++.+...+...+++.|+.|+++         ||+++++...+.++|.++++.+..++.+..   +||..|.+.++
T Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~~~~---------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~  199 (467)
T PRK09556        129 WALSGFFQSTGGPCSYSTITRWTPRRK---------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSI  199 (467)
T ss_pred             HHHHHHHHhccchHHHHHHHHHcCccc---------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence            999999999998998899999999864         999999999999999999998887776653   69999988887


Q ss_pred             HHHHHHHHhhh-cccccccCC---------CC--Ccc-hhHHH--HHHH-H-HHhcccchhHHHHHHHHhhhcccccccc
Q 015348          161 LVVLQFFITIA-VRESALKLP---------KS--QSN-VGIRA--QLSE-L-SAALRKPEIMYSVAWFAASYSIIPVLTG  223 (408)
Q Consensus       161 ~~~~~~~~~~~-~~e~~~~~~---------~~--~~~-~~~~~--~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (408)
                      +.++..+..++ .++++++..         +.  +++ .+.++  ..++ . ++.+|+|.+|...+..++..........
T Consensus       200 ~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  279 (467)
T PRK09556        200 IALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDN  279 (467)
T ss_pred             HHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence            77766554443 454432210         00  000 00000  0111 1 2258899988887776664544445566


Q ss_pred             eeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEe
Q 015348          224 TMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLY  303 (408)
Q Consensus       224 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      +.|.|..+.+|++..+.+.......++.+++.++.|+++||+++|+..................  .       ......
T Consensus       280 ~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~--~-------~~~~~~  350 (467)
T PRK09556        280 WSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY--Q-------HATSEY  350 (467)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH--H-------hcCcHH
Confidence            7777888889999999999988889999999999999999999888765543333222111111  0       011111


Q ss_pred             ehhhhHHHHHHHH-HhhhhHHHHHHHhcCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 015348          304 VLIFSSLLEVMFF-FKILPFSVYIAQVCPPGCEGSIMAFVMSAVAL-AFIVSGYLGVALAS  362 (408)
Q Consensus       304 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~ig~~~~g~l~~  362 (408)
                      ......+..++.. ....+......|..|++.+|++.|+.+...++ |..++|.+.|.+.|
T Consensus       351 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        351 MYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            1222222233221 21122235667999999999999999999997 77999999999999

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=1.9e-31  Score=246.79  Aligned_cols=338  Identities=13%  Similarity=0.025  Sum_probs=250.5

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      .++++++|.|+.+.+++.+...++..+ ++++|.++||     +|||+.+..+.++..++..++++.+    +++.+++.
T Consensus        18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~   88 (399)
T TIGR00893        18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-----FGARKTLAVFIVIWGVFTGLQAFAG----AYVSLYIL   88 (399)
T ss_pred             HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-----cCcceeeHHHHHHHHHHHHHHHHHc----CHHHHHHH
Confidence            347789999999999999999988777 9999999999     9999999999999999999999988    99999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVV  163 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~  163 (408)
                      |++.|++.+...+...+++.|+.|++         +|++.++..+...++|.++++.+++.+.+..+||+.|++.++..+
T Consensus        89 ~~l~g~~~~~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  159 (399)
T TIGR00893        89 RVLLGAAEAPFFPGIILIVASWFPAS---------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGI  159 (399)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHH---------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            99999999999999999999999875         399999999999999999999999999999999999999888877


Q ss_pred             HHHHHhhh-cccccccCCCCCcchh----------------HHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeE
Q 015348          164 LQFFITIA-VRESALKLPKSQSNVG----------------IRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMF  226 (408)
Q Consensus       164 ~~~~~~~~-~~e~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (408)
                      +..+...+ .||++++++..+++++                .++..++.++.+++|.++...+..++............+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (399)
T TIGR00893       160 IWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFP  239 (399)
T ss_pred             HHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            76655444 5555432211100000                000112345567888888777766664555555555666


Q ss_pred             EEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHH-HHHHHHHHHHHhHhhhcccccccCcCceEeeh
Q 015348          227 FYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISA-IQAMMAVFMISDVLFVKGVYREMGVPDSLYVL  305 (408)
Q Consensus       227 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (408)
                      .|..+..|.++.+.+.......++.+++.++.+++.||+++|+.... .........+........    .......+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  315 (399)
T TIGR00893       240 TYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFA----TNYVNIPYAA  315 (399)
T ss_pred             HHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH----hccchhHHHH
Confidence            67777789999999999999999999999999999999998862111 111111110000000000    0111111111


Q ss_pred             hhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          306 IFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       306 ~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      .......+.+.. ..|. .++.+|..|+++||+++|+.+...+++..++|.+.|.+.|..|
T Consensus       316 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g  375 (399)
T TIGR00893       316 LALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG  375 (399)
T ss_pred             HHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence            212222222223 4455 8899999999999999999999999999999999999998776

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=100.00  E-value=8.4e-31  Score=244.96  Aligned_cols=338  Identities=14%  Similarity=0.179  Sum_probs=258.8

Q ss_pred             chhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHh-ccCcchHHH
Q 015348            2 AVNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAIL-SQSSISIFT   79 (408)
Q Consensus         2 ~~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~   79 (408)
                      ++++++ .++.-|+..++++..+..+|.++ +++.|.++||     ++||++++.+.++..+....+.+. ..+..++|.
T Consensus        32 a~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-----~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~  105 (524)
T PF05977_consen   32 ALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADR-----FDRRRILILSQLLRALVALLLAVLAFFGLLSPWL  105 (524)
T ss_pred             HHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----ccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHH
Confidence            456666 46788999999999999999877 9999999999     999999999988876655544432 233457899


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 015348           80 MSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFG  159 (408)
Q Consensus        80 ~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~  159 (408)
                      +++..++.|++.++..|+.++.++|..|+++         ..+++++.+...++..++||.++|.++...|..+.|.+.+
T Consensus       106 Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~---------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~ina  176 (524)
T PF05977_consen  106 LLILTFLLGIGSAFFNPAWQAIIPELVPKED---------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINA  176 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHhh---------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999864         8888999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHh-cccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChh
Q 015348          160 LLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAA-LRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSS  238 (408)
Q Consensus       160 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  238 (408)
                      +..++.......+|.++++++.  ++++..+..++-.+. .++|.+...++..++.+..........|.+..+.+|.++.
T Consensus       177 lsfl~~i~~l~~~~~~~~~~~~--~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~  254 (524)
T PF05977_consen  177 LSFLISILALLRWKPPPPPSSL--PRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGAS  254 (524)
T ss_pred             HHHHHHHHHHHHcccccccccc--chhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHH
Confidence            8877766555555543322221  112233333333333 4566666555544443433333444566667778999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHh
Q 015348          239 VLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFK  318 (408)
Q Consensus       239 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
                      .+|++.+..++|+++|.++.+++.+|.++++.+..+.+..++..+.           .+...+.+......+..|++...
T Consensus       255 ~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~-----------lal~~~~~~~~~~l~l~G~~~~~  323 (524)
T PF05977_consen  255 GYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLL-----------LALSPSFWLALIALFLAGAAWII  323 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHH-----------HhcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888887777666655443           22223333444455555665544


Q ss_pred             hhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          319 ILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       319 ~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      .... ++.+++.+|++.+|+++|++++....+..+|..+.|.+.+..|..
T Consensus       324 ~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~  373 (524)
T PF05977_consen  324 ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVR  373 (524)
T ss_pred             HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            4444 889999999999999999999999999999999999999998864

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=6.5e-31  Score=238.40  Aligned_cols=319  Identities=10%  Similarity=0.033  Sum_probs=221.8

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      ..+++|+|+|+.|.|++.+.+.+++.+ +++.|+++||     +|||+++..+......+.......+    +++.+++.
T Consensus        15 p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-----~grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~   85 (368)
T TIGR00903        15 SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-----AFKRWFLFGSLATFAAAAGRLLDPF----NYEWLLAC   85 (368)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----ccchHHHHHHHHHHHHHHHHHHHhc----cHHHHHHH
Confidence            456789999999999999999988777 8999999999     9999877655544444433223335    89999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVV  163 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~  163 (408)
                      |++.|++.+... ...+.+.|+.|++         +|+++.++.+.+.++|.++++.+++++.+.+|||+.|.+.+++.+
T Consensus        86 R~l~G~g~~~~~-~~~~~~~~~~~~~---------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~  155 (368)
T TIGR00903        86 QLLAALGQPFLL-NAFAPAASQIREE---------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAA  155 (368)
T ss_pred             HHHHHhHhHHHH-HHHHHHHHHcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence            999999999754 4446678998864         499999999999999999999999999999999999999888877


Q ss_pred             HHHHHh-hhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHH
Q 015348          164 LQFFIT-IAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGI  242 (408)
Q Consensus       164 ~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~  242 (408)
                      +..+.+ +++||+|+++++..+   .++..++.++.++||.+|...+..++.........++.|.|+.+ .|++.. .+.
T Consensus       156 ~~~~~~~~~lp~~p~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~  230 (368)
T TIGR00903       156 AGIILVLAALPALPFQAAEGFG---FKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGD  230 (368)
T ss_pred             HHHHHHHHHcCCCCCCCCCCcc---hHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHH
Confidence            765544 458887654322111   11223456677999999998887777666666667788888854 677765 555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCC---ceehHH-HHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHh
Q 015348          243 SKVFGQAAMLLWGVIYNSGLKSVSP---RKLISA-IQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFK  318 (408)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
                      ...+..+.+.++.   +++.||..+   |+.... .....++.... ..          ...............++....
T Consensus       231 ~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~-~~----------~~~~~~~~~~~~~l~~~~~~~  296 (368)
T TIGR00903       231 AVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIAAFFLA-LA----------FELNRLALFAFIGIAGLLMLP  296 (368)
T ss_pred             HHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHHHHHHH-HH----------HccccHHHHHHHHHHHHhhhh
Confidence            5555555555554   455555543   333222 22222221111 00          001111112222222233333


Q ss_pred             hhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          319 ILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALA  361 (408)
Q Consensus       319 ~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~  361 (408)
                      ..+. +++.+|..|++.||++.|+.+...++++.++|.+.+.+.
T Consensus       297 ~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       297 AYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             hHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            3343 778999999999999999999999999999998888777

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.98  E-value=6.8e-31  Score=245.43  Aligned_cols=335  Identities=12%  Similarity=0.112  Sum_probs=238.0

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      ...+++++|+|+.+.+++.+...++..+ ++++|+++||     +|||+++..+.+..+++.+++.+.+    +++.+++
T Consensus        41 ~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~~~----~~~~l~~  111 (426)
T PRK12307         41 MYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-----FGRKPLMMWSIVAYSVGTGLSGLAS----GVIMLTL  111 (426)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCChHHHHHHHHHHHHHHHHHHHHh----HHHHHHH
Confidence            3456789999999999999999988877 9999999999     9999999999999999999999998    9999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLV  162 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~  162 (408)
                      .|++.|++.+...+...+++.|+.|+++         |+++.++...+.++|.++++.+.+.+.+..+||+.|++.....
T Consensus       112 ~r~l~G~g~g~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~  182 (426)
T PRK12307        112 SRFIVGMGMAGEYACASTYAVESWPKHL---------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPV  182 (426)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCCHhH---------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence            9999999999999888899999998754         9999999999999999999999999988899999998855433


Q ss_pred             HHHHHHhhhcccccccCCC--CCc----chhHHHHHHHHHHhcccchhHHHHHHHHhhhc---ccccccceeEEEEEecc
Q 015348          163 VLQFFITIAVRESALKLPK--SQS----NVGIRAQLSELSAALRKPEIMYSVAWFAASYS---IIPVLTGTMFFYQTQNL  233 (408)
Q Consensus       163 ~~~~~~~~~~~e~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  233 (408)
                      ++........||+++.+++  +++    +...++...+.++.+++|.++...........   .........+.|..+ .
T Consensus       183 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  261 (426)
T PRK12307        183 LLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-E  261 (426)
T ss_pred             HHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c
Confidence            3322222224444321100  000    00111111234556777776554332222111   111123334444443 6


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHH
Q 015348          234 KIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEV  313 (408)
Q Consensus       234 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
                      |+++...+.......++.+++.++.+++.||+++|+.+..+.+...+..+....        . ............+..+
T Consensus       262 g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~  332 (426)
T PRK12307        262 GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFR--------I-PQDNYLLLGACLFGLM  332 (426)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH--------H-ccccHHHHHHHHHHHH
Confidence            889989998888889999999999999999999998877666555443322111        0 0011111111111111


Q ss_pred             HHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          314 MFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       314 ~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .......+. ..++.|..|++.+|++.|+.+...++++.++|.+.|++.+..|.
T Consensus       333 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~  386 (426)
T PRK12307        333 ATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGL  386 (426)
T ss_pred             HhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence            111122233 56778999999999999999999999999999999999998764

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.98  E-value=2.9e-30  Score=239.48  Aligned_cols=331  Identities=15%  Similarity=0.074  Sum_probs=244.6

Q ss_pred             hhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 015348            7 LKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLL   85 (408)
Q Consensus         7 l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (408)
                      +++++|.|+.+.++..+...++..+ +++.|.++||     +|||+++..+.....++.+.+.+.+    +++.+++.|+
T Consensus        39 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~~~  109 (406)
T PRK15402         39 VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-----IGRRPVMLAGVAFFILTCLAILLAQ----SIEQFTLLRF  109 (406)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCChHHHHHHHHHHHHHHHHHHHHc----cHHHHHHHHH
Confidence            5689999999999999998888777 8999999999     9999999999999999998888888    8999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q 015348           86 LSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQ  165 (408)
Q Consensus        86 l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~  165 (408)
                      +.|++.+...+...+.+.|..|+++         |.+..+.......+|..+||.+++.+.+..+||+.|++.++..++.
T Consensus       110 l~G~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~  180 (406)
T PRK15402        110 LQGIGLCFIGAVGYAAIQESFEEAD---------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALS  180 (406)
T ss_pred             HHHhHhhhHHHHHHHHHHHHhChhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence            9999999888888889999988753         7788888888888999999999999999899999999988887776


Q ss_pred             HHHhh-hcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHH
Q 015348          166 FFITI-AVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISK  244 (408)
Q Consensus       166 ~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~  244 (408)
                      .+... ..||++++++++   .+.++..++.++.++||.++...+...+............+.+..+++|.++.+.+...
T Consensus       181 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~  257 (406)
T PRK15402        181 FFGLWRAMPETAGRVGEK---LSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQ  257 (406)
T ss_pred             HHHHHHhCCCCCcccccc---ccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHH
Confidence            55443 467664332221   11223344555668999887766655443322222223345555666899999999887


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-H
Q 015348          245 VFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-S  323 (408)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  323 (408)
                      ....++.+++.++.+++.||+++|+.+..+.....+..........      .....++.........+++.....|. .
T Consensus       258 ~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~~~~g~g~~~~~~~~~  331 (406)
T PRK15402        258 VPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATV------ISSHAYLWLTAGLSLYAFGIGLANAGLY  331 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH------cccccHHHHHHHHHHHHHHHHHHhhhHH
Confidence            7777888999999999999999998877766555444333211000      00112222334444555555544444 4


Q ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          324 VYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       324 ~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      ... ...+++++|++.+..+....++..+|+.+.+.+.+..+
T Consensus       332 ~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~  372 (406)
T PRK15402        332 RLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG  372 (406)
T ss_pred             HHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence            433 34455899999999999999999999999999877655

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.98  E-value=1.1e-30  Score=240.82  Aligned_cols=325  Identities=17%  Similarity=0.143  Sum_probs=236.1

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      ++.|+++++|.|+.++|++.+...++..+ +++.|+++||     +|||+.+..+.+...++.+.+.+.+    +++.++
T Consensus        33 ~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-----~g~k~~l~~~~~~~~~~~~~~~~~~----~~~~l~  103 (400)
T PRK11646         33 ISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-----FGAKPMIVTGMLMRAAGFATMAIAH----EPWLLW  103 (400)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-----hCchHHHHHHHHHHHHHHHHHHHhc----cHHHHH
Confidence            35678899999999999999998876665 8999999999     9999999999999999999998888    899999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      +.|++.|++.+...+...+++.|..|++         +|++++++.+...++|..+||.+++.+. .+|||+.|++.+..
T Consensus       104 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~  173 (400)
T PRK11646        104 LSCILSGLGGTLFDPPRTALVIKLIRPH---------QRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVL  173 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence            9999999999999998889999999875         3999999999999999999999999998 67999999998877


Q ss_pred             HHHHHHH-hhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhH
Q 015348          162 VVLQFFI-TIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVL  240 (408)
Q Consensus       162 ~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  240 (408)
                      .++..+. .++.||+++++.    +++.++   +.++.+++|.++...+..+.............|.|.++..+ ++.+.
T Consensus       174 ~~~~~i~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~  245 (400)
T PRK11646        174 FVLAAAFNAWLLPAYKLSTV----RTPVRE---GMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAV  245 (400)
T ss_pred             HHHHHHHHHHhCCccccccc----chhhHH---HHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHH
Confidence            7665444 334555322111    112222   33455788887665444333222221222345555554444 67788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-cCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhh
Q 015348          241 GISKVFGQAAMLLWGVIYNSGLK-SVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKI  319 (408)
Q Consensus       241 g~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (408)
                      +.+.....+....+....+++.| |++.++.+..+..+.++......           ..+..+.........+.+....
T Consensus       246 g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~l~~~g~~~~  314 (400)
T PRK11646        246 KWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIG-----------MVSNLQQLFTLICLFYIGSIIA  314 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHHHHHHHHH
Confidence            88877777766655555566554 45555555555444443332211           1111112233334445555555


Q ss_pred             hhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          320 LPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       320 ~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      .|. .+++.+..|++++|+++|+.+...++|..+||.++|.+.|+.+
T Consensus       315 ~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        315 EPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             HccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence            566 7888999999999999999999999999999999999999864

>PRK10504 putative transporter; Provisional

Probab=99.98  E-value=6.4e-31  Score=248.62  Aligned_cols=335  Identities=15%  Similarity=0.099  Sum_probs=249.4

Q ss_pred             hhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 015348            7 LKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLL   85 (408)
Q Consensus         7 l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (408)
                      +.+++|.|+.+.+++.+...++..+ .+++|+++||     +|||+.++.+..+..++.+.+.+.+    +++.+++.|+
T Consensus        36 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~  106 (471)
T PRK10504         36 MAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-----VGVRNIFFTAIVLFTLGSLFCALSG----TLNELLLARV  106 (471)
T ss_pred             HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hchHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHH
Confidence            3468999999999999888877665 8999999999     9999999999888888888888877    8999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q 015348           86 LSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQ  165 (408)
Q Consensus        86 l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~  165 (408)
                      ++|++.+...+...+.+.|..|++         +|++..+..+...++|..+||.+++.+.++.|||+.|.+......+.
T Consensus       107 l~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~  177 (471)
T PRK10504        107 LQGVGGAMMVPVGRLTVMKIVPRE---------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIG  177 (471)
T ss_pred             HHHhhhHHHHHHHHHHHHHHcCHH---------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            999999999998889999998865         38999999999999999999999999999999999999987776666


Q ss_pred             HHHhhh-cccccccCCCCCcc-------------------hh--H---------------------HHHH----HHHHHh
Q 015348          166 FFITIA-VRESALKLPKSQSN-------------------VG--I---------------------RAQL----SELSAA  198 (408)
Q Consensus       166 ~~~~~~-~~e~~~~~~~~~~~-------------------~~--~---------------------~~~~----~~~~~~  198 (408)
                      .+.... .|+++.++.+.+..                   +.  .                     ++..    ....+.
T Consensus       178 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  257 (471)
T PRK10504        178 AIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKL  257 (471)
T ss_pred             HHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHH
Confidence            554443 44432221110000                   00  0                     0000    001235


Q ss_pred             cccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHH
Q 015348          199 LRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMM  278 (408)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  278 (408)
                      +|||.++..+...++............++|.++..|.++.+.++......++.+++.++.+++.||+++|+.+..+....
T Consensus       258 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~  337 (471)
T PRK10504        258 FRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGL  337 (471)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            78888777766666644443333444556666668999999999998888889999899999999999999888777666


Q ss_pred             HHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 015348          279 AVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLG  357 (408)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~  357 (408)
                      .+.......        .......+......+..+++.+...+. +.+..+..|++.+|+.+|+.+...++|..+|+.++
T Consensus       338 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~  409 (471)
T PRK10504        338 ALVSLLFML--------VALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIA  409 (471)
T ss_pred             HHHHHHHHh--------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            555433221        111111111222333444554444444 78888999999999999999999999999999999


Q ss_pred             HHHHHhcCCC
Q 015348          358 VALASYTGVT  367 (408)
Q Consensus       358 g~l~~~~g~~  367 (408)
                      |.+.+..|..
T Consensus       410 g~ll~~~g~~  419 (471)
T PRK10504        410 GLLLGLFGQQ  419 (471)
T ss_pred             HHHHHHhhhh
Confidence            9999988764

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.98  E-value=5.9e-30  Score=241.31  Aligned_cols=342  Identities=11%  Similarity=0.117  Sum_probs=239.9

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccccchheeecccccccCCcchh-HHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVP-YIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~~~~~G~l~Dr~~~~~~grk~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      +.++ ++.|.|..++|.+ +....++..++++|+++||++..+.|||| ++..+.+..+++...+++.+. ..+++.+.+
T Consensus        36 ~~~l-~~~g~~~~~ig~~-~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~-~~~l~~l~~  112 (491)
T PRK11010         36 QAWM-TVENIDLKTIGFF-SLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEP-GTQLRWLAA  112 (491)
T ss_pred             HHHH-HhCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCC-cchHHHHHH
Confidence            4455 5569999999997 44555667799999999994322226666 677888888888777777542 236888899


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh-cCChhhHHHHHHHH
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID-RFSPPSMFLFFGLL  161 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~-~~g~~~~f~i~~~~  161 (408)
                      .+++.+++.+..++..+++..|+.|++         +|++..++...+..+|.++++.+++++.+ ..|||..|++.++.
T Consensus       113 ~~~l~~~~~a~~~i~~~a~~~~~~~~~---------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l  183 (491)
T PRK11010        113 LAVVIAFCSASQDIVFDAWKTDVLPAE---------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAAL  183 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence            999999999999999999999999875         49999999999999999999999999988 57999999999888


Q ss_pred             HHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHH
Q 015348          162 VVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLG  241 (408)
Q Consensus       162 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  241 (408)
                      .++..+..+++||++++++++ ++. .++..+++++.++++..+...+..++..........+.++|+.++.|++.++.+
T Consensus       184 ~ll~~l~~~~~~e~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g  261 (491)
T PRK11010        184 LIPCIIATLLAPEPTDTIPVP-KTL-EQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVG  261 (491)
T ss_pred             HHHHHHHHHhcCCCccccccc-cch-hhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            777766666678765332111 110 111123344557777766655544442333223334455566667899999999


Q ss_pred             HHH-HHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHH-HHhh
Q 015348          242 ISK-VFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMF-FFKI  319 (408)
Q Consensus       242 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  319 (408)
                      ... ....++.+++.++.|++.||+++|+.+..+.+..++..+....+..      . ....+.+........+. ....
T Consensus       262 ~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~------~-~~~~~~l~~~~~l~~~~~g~~~  334 (491)
T PRK11010        262 LVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI------T-DKNLYSMGAAVFFENLCGGMGT  334 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh------c-cccHHHHHHHHHHHHHHHHHHH
Confidence            987 5667899999999999999999888766555444433222111000      0 01111111122221222 2222


Q ss_pred             hhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          320 LPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       320 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .+..++..+.+|++.+++.+|+.++..++|..+++.+.|.+.|..|+
T Consensus       335 ~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~  381 (491)
T PRK11010        335 AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGW  381 (491)
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            23377888999999999999999999999999999999999998874

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.98  E-value=2.4e-30  Score=245.13  Aligned_cols=333  Identities=16%  Similarity=0.025  Sum_probs=249.2

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      .+.+|+|.|+++.+++.+.+.+.... .+++|+++||     +|||+.++.+..+..++.+.+++++    +++.+++.|
T Consensus        31 ~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-----~Grk~~l~~~~~~~~~~~~~~~~a~----~~~~li~~r  101 (495)
T PRK14995         31 TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-----IGFKRLLMLGGTLFGLASLAAAFSP----TASWLIATR  101 (495)
T ss_pred             HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHH
Confidence            34689999999999999999987766 8999999999     9999999999999999999999998    999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVL  164 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~  164 (408)
                      +++|++.+...+...+.+.+..++++        +|++++++......+|..+||.+++++.++.|||+.|++...+.++
T Consensus       102 ~l~G~g~~~~~~~~~~~l~~~~~~~~--------~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~  173 (495)
T PRK14995        102 ALLAIGAAMIVPATLAGIRATFTEEK--------QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLV  173 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Confidence            99999999988877777877765443        5999999999999999999999999999999999999998877766


Q ss_pred             HHHHh-hhcccccccCCCCCcchhH--------------H-------HH------------------HHHH--------H
Q 015348          165 QFFIT-IAVRESALKLPKSQSNVGI--------------R-------AQ------------------LSEL--------S  196 (408)
Q Consensus       165 ~~~~~-~~~~e~~~~~~~~~~~~~~--------------~-------~~------------------~~~~--------~  196 (408)
                      ..+.. +++||++++++++.+....              +       ..                  ..+.        .
T Consensus       174 ~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~  253 (495)
T PRK14995        174 VMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDM  253 (495)
T ss_pred             HHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCH
Confidence            65443 4467654332211110000              0       00                  0010        2


Q ss_pred             HhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHH
Q 015348          197 AALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQA  276 (408)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  276 (408)
                      +.+|+|.+....+..++............+.|.++..|+++.+.|.......++..++.++.|++.||+++|+.+..+..
T Consensus       254 ~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~  333 (495)
T PRK14995        254 RLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMA  333 (495)
T ss_pred             HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            45677776655555444333333333445556667789999999999999999999999999999999999887776665


Q ss_pred             HHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 015348          277 MMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGY  355 (408)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~  355 (408)
                      +..+.......        .......+......+..+++.+...+. .....+..|+++++.+.++.+...++|..+|+.
T Consensus       334 ~~~~~~~~l~~--------~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~a  405 (495)
T PRK14995        334 LSALSFYGLAM--------TDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIA  405 (495)
T ss_pred             HHHHHHHHHHH--------hcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHH
Confidence            55444332111        011111122333455556665544444 778888999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 015348          356 LGVALASY  363 (408)
Q Consensus       356 ~~g~l~~~  363 (408)
                      +.|.+.+.
T Consensus       406 i~g~i~~~  413 (495)
T PRK14995        406 IFGLLLSR  413 (495)
T ss_pred             HHHHHHHH
Confidence            99988764

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.98  E-value=5.2e-30  Score=235.79  Aligned_cols=325  Identities=14%  Similarity=0.060  Sum_probs=235.7

Q ss_pred             hhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 015348            8 KDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLL   86 (408)
Q Consensus         8 ~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   86 (408)
                      .+|++.|+.+.+++.+.+.+++.+ +|++|+++||     +|||++++.+..+..++.+.+.+..    +.   ++.|++
T Consensus        30 ~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-----~grr~vl~~~~~~~~~~~~~~~~~~----~~---~~~r~l   97 (393)
T PRK11195         30 LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-----FPKGRVMFIANGIKLLGCLLMLFGI----HP---LLAYGL   97 (393)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-----cCCchhhHHHHHHHHHHHHHHHHHH----HH---HHHHHH
Confidence            578999999999999999988887 9999999999     9999999999999988888777766    54   678999


Q ss_pred             HHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHH
Q 015348           87 SNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQF  166 (408)
Q Consensus        87 ~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~  166 (408)
                      +|++.+...|...+++.|+.|+++         |++++++.+...++|.++||.++|++.+. .|+..+.+.+...++..
T Consensus        98 ~G~~~a~~~pa~~a~i~~~~~~~~---------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~  167 (393)
T PRK11195         98 VGIGAAAYSPAKYGILTELLPGEK---------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA  167 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999764         99999999999999999999999999885 48888877766655555


Q ss_pred             HHhhhcccccccCCCCCcc-h-hHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHH
Q 015348          167 FITIAVRESALKLPKSQSN-V-GIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISK  244 (408)
Q Consensus       167 ~~~~~~~e~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~  244 (408)
                      +....+||++.++++.+++ . ..++..++.+..+++|.+........+.+..........+.|..+.+|.++.+.|...
T Consensus       168 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~  247 (393)
T PRK11195        168 LFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQ  247 (393)
T ss_pred             HHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Confidence            5555678765432221111 1 1222223344557888766544433332222222223334455666899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhh-hhHH
Q 015348          245 VFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKI-LPFS  323 (408)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  323 (408)
                      ....++.+++.++.+++.||.++++.+..+... +.......           .....+......+..+++.... .|.+
T Consensus       248 ~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~G~~~g~~~~~~~  315 (393)
T PRK11195        248 AVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMA-----------LQHSLLPAYPLLILIGALGGFFVVPMN  315 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHH-----------HHhHHHHHHHHHHHHHHhhhhhhhhHH
Confidence            999999999999999999998888776655432 22211100           1111222233344445554433 3457


Q ss_pred             HHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          324 VYIAQVCPPGC-EGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       324 ~~~~~~~p~~~-~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      +..++..|++. +|++.|+.+...+++..++..+.+.+ +..|.+
T Consensus       316 ~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~  359 (393)
T PRK11195        316 ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVP  359 (393)
T ss_pred             HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCC
Confidence            77888776665 79999999999999999999998855 566654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.98  E-value=5.5e-30  Score=235.33  Aligned_cols=320  Identities=12%  Similarity=0.077  Sum_probs=232.4

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      .+++|+|.|+++.|++.+...++..+ +|++|+++||     +|||+++..+..+.+++.+++++++    +++.+++.|
T Consensus        28 ~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~l~~~~~----~~~~l~~~r   98 (382)
T PRK10091         28 ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-----YSLKHILLFLVALCVIGNAMFTLSS----SYLMLAIGR   98 (382)
T ss_pred             HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-----CccHHHHHHHHHHHHHHHHHHHHhC----cHHHHHHHH
Confidence            46789999999999999999988877 9999999999     9999999999999999999999998    999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVL  164 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~  164 (408)
                      ++.|++.+...+...+.+.|+.+++         +|+++++....+..+|..++|.+++.+.+..+||+.|++.++..++
T Consensus        99 ~l~G~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~  169 (382)
T PRK10091         99 LVSGFPHGAFFGVGAIVLSKIIKPG---------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIA  169 (382)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCChH---------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHH
Confidence            9999999988888878888887764         3888999999999999999999999999999999999999887766


Q ss_pred             HHHHh-hhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHH
Q 015348          165 QFFIT-IAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGIS  243 (408)
Q Consensus       165 ~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  243 (408)
                      ..+.. ..+||++++++.     +.++.    .+.+|++..+......++............+++..+..|+++.+.+.+
T Consensus       170 ~~~~~~~~lp~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~  240 (382)
T PRK10091        170 VLASIYFWVPDIRDEAKG-----GLREQ----FHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFI  240 (382)
T ss_pred             HHHHHHHhCCCCCccccc-----CHHHH----HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            65443 347775432111     12222    234677776665544433222221222233445556689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhh-hhH
Q 015348          244 KVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKI-LPF  322 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  322 (408)
                      .....++.+++.++.+++.||+++|+.+..+..+.++..+.....          .+..+.........+.+.... .|.
T Consensus       241 ~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~  310 (382)
T PRK10091        241 MMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF----------GGMKTASLIFAFICCAGLFALSAPL  310 (382)
T ss_pred             HHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHhhhHHH
Confidence            999999999999999999999999988877766555543332110          011111222222223332222 233


Q ss_pred             H-HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015348          323 S-VYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYT  364 (408)
Q Consensus       323 ~-~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~  364 (408)
                      . ....+..|++.++...  .+...++|..+||.++|.+.|..
T Consensus       311 ~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~  351 (382)
T PRK10091        311 QILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLG  351 (382)
T ss_pred             HHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcc
Confidence            3 3344444555555543  46778999999999999999863

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.98  E-value=7.9e-32  Score=245.36  Aligned_cols=324  Identities=19%  Similarity=0.241  Sum_probs=242.0

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      .++++++|.|+.+++++.+...++..+ +++.|+++||     +|||+++..+.++.+++.+...+++    +.+.+++.
T Consensus        21 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~   91 (352)
T PF07690_consen   21 LYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-----FGRRRVLIIGLLLFALGSLLLAFAS----NFWLLLIA   91 (352)
T ss_dssp             -HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-----S-HHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHH
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCeeeEeehhhhhhhHHHHhhhhh----hHHHHhhh
Confidence            377899999999999999999977666 9999999999     9999999999999999866666656    77799999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVV  163 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~  163 (408)
                      |++.|++.+...+...+++.|+.|+++         |++.++..+...++|.+++|.+++.+.+..+||+.|++.++..+
T Consensus        92 ~~l~g~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~  162 (352)
T PF07690_consen   92 RFLLGIGSGFFSPASNALIADWFPPEE---------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL  162 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCTCC---------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccchhhh---------hhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence            999999999999999999999999854         99999999999999999999999999988999999999999988


Q ss_pred             HHHHHh-hhcccccccCCCCCcchh---HHHHHHH-HHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCC-h
Q 015348          164 LQFFIT-IAVRESALKLPKSQSNVG---IRAQLSE-LSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIR-S  237 (408)
Q Consensus       164 ~~~~~~-~~~~e~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~  237 (408)
                      +..++. .+.+++++++++++++++   .++..++ .+...++|.+|......+.............+.|..+.+|.+ .
T Consensus       163 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  242 (352)
T PF07690_consen  163 IAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGP  242 (352)
T ss_dssp             HHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTH
T ss_pred             hhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHH
Confidence            886643 344444433332222222   2222233 344466676663333333323333345555566667888999 7


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHH
Q 015348          238 SVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFF  317 (408)
Q Consensus       238 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
                      .+.+.......+..+++.++.+++.||+++++..........+........        .............+..+++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~  314 (352)
T PF07690_consen  243 SQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLL--------PFSSSPVWLIIALFLIGFGFG  314 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCS--------HHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH--------HHhhhHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999998777666655555444332210        011111123334455566666


Q ss_pred             hhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Q 015348          318 KILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSG  354 (408)
Q Consensus       318 ~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~  354 (408)
                      ...|. .++.++..|++++|++.|+.+...+++..+||
T Consensus       315 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  315 IVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            56666 88999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.97  E-value=3.1e-30  Score=238.81  Aligned_cols=324  Identities=15%  Similarity=0.103  Sum_probs=223.0

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC----cchH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS----SISI   77 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~----~~~~   77 (408)
                      ++.++++++|.|+.+.|++.+...+++.+ +|+.|.++||     +|||+++..+.++.+++.+.+.+....    ..++
T Consensus        38 l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-----~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (399)
T PRK05122         38 LPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-----LGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSL  112 (399)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-----cCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHH
Confidence            45678899999999999999999988777 9999999999     999999999998887776655443211    1256


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHH
Q 015348           78 FTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLF  157 (408)
Q Consensus        78 ~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i  157 (408)
                      +.+++.|++.|++.+...+...+++.|..|+++         |++++++.....++|.++|+.+++.+.+..||+..+++
T Consensus       113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  183 (399)
T PRK05122        113 LLLLLGRLLLGIGESLAGTGSILWGIGRVGALH---------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLL  183 (399)
T ss_pred             HHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh---------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            788999999999999999988888999987754         89999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCCh
Q 015348          158 FGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRS  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  237 (408)
                      ..+..++..+.....||++++  + +++.+.++..++.   +++.      ....+............+.|.. +.|.  
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~--  248 (399)
T PRK05122        184 IMLLALLGLLLARPRPAVPPV--K-GERLPFRRVLGRV---WPYG------MGLALASIGFGTIATFITLYYA-ARGW--  248 (399)
T ss_pred             HHHHHHHHHHHHhcCCCCCCC--C-ccchhHHHHHHHH---HHHH------HHHHHHHHHHHHHHHHHHHHHH-Hccc--
Confidence            766554443332223332211  1 1111122212111   1111      1111101111111112222222 2344  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHH
Q 015348          238 SVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFF  317 (408)
Q Consensus       238 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
                      ...+.......++.+++.++.+++.||+++|+.+..+.....+.......           ..+.+......+..+++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~G~~~~  317 (399)
T PRK05122        249 DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL-----------APSPWMALIGAALTGFGFS  317 (399)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHhHH
Confidence            23455566777888899999999999999988877666555544333211           1111223334455566555


Q ss_pred             hhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          318 KILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       318 ~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ...|. .....+..|++++|+++|+++...++|..+++.+.|.+.+..|+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  367 (399)
T PRK05122        318 LVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGY  367 (399)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            55555 66778899999999999999999999999999999999998764

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.7e-29  Score=227.10  Aligned_cols=348  Identities=14%  Similarity=0.185  Sum_probs=278.8

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhc-ccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC--cchHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS--SISIFT   79 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~   79 (408)
                      +.+|++|..|+|+..+|.+..+.. +..+..|+.|.++||+++|+.+|||+++.+.+..++...++..+++.  ..+...
T Consensus        35 Ll~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~y  114 (467)
T COG2211          35 LLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIY  114 (467)
T ss_pred             HHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHH
Confidence            578899999999999999999988 56667999999999999999999999999999999999998888742  246777


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-------CChh
Q 015348           80 MSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR-------FSPP  152 (408)
Q Consensus        80 ~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~-------~g~~  152 (408)
                      ..+..++.++++...+.+..++.++++++.+        +|.+..++.+...++|..+...+...+.+.       .||+
T Consensus       115 a~vtY~l~~l~YT~vniPy~al~~~iT~d~~--------ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~  186 (467)
T COG2211         115 ALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--------ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQ  186 (467)
T ss_pred             HHHHHHHHHHHHHheeCchhhcchhhcCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHH
Confidence            7888999999999999999999999999876        699999999999999988777666655532       5788


Q ss_pred             hHHHHHHHHHHHHHHHhhh-cccccccCCCCC--cchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEE
Q 015348          153 SMFLFFGLLVVLQFFITIA-VRESALKLPKSQ--SNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQ  229 (408)
Q Consensus       153 ~~f~i~~~~~~~~~~~~~~-~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (408)
                      ....+.+++.++..+.+++ ++|+..+..+.+  .+.+.++.   +...++||+++..++..++.+...........+|.
T Consensus       187 ~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~---~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~  263 (467)
T COG2211         187 GTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDS---FLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYV  263 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHH---HHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeE
Confidence            8888888888887777666 888765443322  12223322   33358999988888877776667777777788888


Q ss_pred             EeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhH
Q 015348          230 TQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSS  309 (408)
Q Consensus       230 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
                      +..+|.+.............+.+++.++..++.+|+|+|+++.++.++..+......+        .+ +++....+...
T Consensus       264 ~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f--------~~-~~~~~l~~~~~  334 (467)
T COG2211         264 TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYF--------TP-AGSVVLIVVAL  334 (467)
T ss_pred             EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHh--------hc-CcchHHHHHHH
Confidence            8889988888888888888888888999999999999999999998887777666443        22 23333444445


Q ss_pred             HHHHHHHHhhhhH-HHHHHHhcC-------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 015348          310 LLEVMFFFKILPF-SVYIAQVCP-------PGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDD  370 (408)
Q Consensus       310 ~~~~~~~~~~~~~-~~~~~~~~p-------~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~  370 (408)
                      +..+++.....+. +++++|..+       .+.+|..+|..+.+..+|..++..+.|++.+..|+.++.
T Consensus       335 ~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~  403 (467)
T COG2211         335 IIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNV  403 (467)
T ss_pred             HHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            5666666666666 777777654       467899999999999999999999999999999987665

>PRK09669 putative symporter YagG; Provisional

Probab=99.97  E-value=3.6e-29  Score=234.37  Aligned_cols=375  Identities=15%  Similarity=0.160  Sum_probs=256.0

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcc-cccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC--cchHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANL-PMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS--SISIFT   79 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~-~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~   79 (408)
                      +.+|+++++|+|+.++|.+.++..+ ..+.+|+.|.++||+++|+.+|||+++.+.+..+++..++...+..  ....++
T Consensus        32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~  111 (444)
T PRK09669         32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY  111 (444)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            5688999999999999999999994 5566999999999999988888999999988888887766655521  223566


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh-------cCChh
Q 015348           80 MSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID-------RFSPP  152 (408)
Q Consensus        80 ~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~-------~~g~~  152 (408)
                      +++...+.+.+.+...++..++.+|+.++++        +|++..++.....++|..+++.+...+..       ..+|+
T Consensus       112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~--------eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~  183 (444)
T PRK09669        112 ACVTYILLSLVYTAINVPYCAMPGAITNDPR--------ERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYF  183 (444)
T ss_pred             HHHHHHHHHHHHHhhcchHHHhHHHhcCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence            6777778888888888888899999987755        58999998888888888888765544433       24688


Q ss_pred             hHHHHHHHHHHHHHHHhhh-cccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEe
Q 015348          153 SMFLFFGLLVVLQFFITIA-VRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQ  231 (408)
Q Consensus       153 ~~f~i~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (408)
                      ..+.+.+++.++..+..++ .||+++++++  ++.+.+   ++.++.+|||.++..+...++.............+|.++
T Consensus       184 ~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~--~~~~~~---~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~  258 (444)
T PRK09669        184 YAMMVMGLLGVVLFFCCFFMTKERYTPEVD--NSSSVW---KDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNY  258 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEEecCCCCc--CCCCHH---HHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeee
Confidence            8888877777666554444 6665433221  112233   344555899998887766655333333333334455555


Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHH
Q 015348          232 NLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLL  311 (408)
Q Consensus       232 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                      ..+ +++..+.......+..+++.++.+++.||+++|+.+..+.....+.......        .. ++..+......+.
T Consensus       259 ~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~i  328 (444)
T PRK09669        259 VLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF--------IP-PSNVWLIFALNIL  328 (444)
T ss_pred             ecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--------hC-cchHHHHHHHHHH
Confidence            454 3344455566667888889999999999999998887766554433222111        11 1222233444455


Q ss_pred             HHHHHHhhhhH-HHHHHHhcC-------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-Cch-------H
Q 015348          312 EVMFFFKILPF-SVYIAQVCP-------PGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDF-SGL-------P  375 (408)
Q Consensus       312 ~~~~~~~~~~~-~~~~~~~~p-------~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~-~~~-------~  375 (408)
                      .+++.....+. +++++|.++       ++.+|..+|..+...++|..+|+.++|.+.+..|++...- ..-       .
T Consensus       329 ~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~~~~~~q~~~~~~~i~~  408 (444)
T PRK09669        329 FNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYVGGAAVQSASVLTTINL  408 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence            66666666666 888888875       3456888999999999999999999999999999864311 110       1


Q ss_pred             HHHHHHHhhhhhhhhhhhccCCCCC
Q 015348          376 LALIIQAVCTILPLYWSYFMPDGVK  400 (408)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~  400 (408)
                      ....+.+++.++.+...++.|-+++
T Consensus       409 ~~~~~p~~~~~~~~~~~~~y~l~~~  433 (444)
T PRK09669        409 LFTVIPGVLFAGMAIILNFYKLNDA  433 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCHH
Confidence            2223334444555555566665443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.97  E-value=9.1e-30  Score=238.86  Aligned_cols=337  Identities=12%  Similarity=0.054  Sum_probs=230.1

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      +++++ |+|+.+.+++.+...+++.+ ++++|+++||     +|||++++.+.++.+++.+.+++.+....+++.+++.|
T Consensus        54 ~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-----~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  127 (452)
T PRK11273         54 YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-----SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL  127 (452)
T ss_pred             HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-----cCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence            56677 99999999999999988877 9999999999     99999999999999988888877542223678889999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHH-HHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGG-VLGNLLVGFAIDRFSPPSMFLFFGLLVV  163 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~ig~~l~~~l~~~~g~~~~f~i~~~~~~  163 (408)
                      ++.|++.+...+.....+.++.|++         +|++.+++.+.+.++|. +.+|+++..+....+||+.|++.+++.+
T Consensus       128 ~l~gi~~g~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~  198 (452)
T PRK11273        128 FLCGWFQGMGWPPCGRTMVHWWSQK---------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAI  198 (452)
T ss_pred             HHHHHHHhccchHHHHHHHHhCChH---------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            9999999988887778888888765         49999999999999886 4556554444344599999999887776


Q ss_pred             HHHH-HhhhcccccccCC---CC----C------cchhHHHHHHHH--HHhcccchhHHHHHHHHhhhcccccccceeEE
Q 015348          164 LQFF-ITIAVRESALKLP---KS----Q------SNVGIRAQLSEL--SAALRKPEIMYSVAWFAASYSIIPVLTGTMFF  227 (408)
Q Consensus       164 ~~~~-~~~~~~e~~~~~~---~~----~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (408)
                      +..+ ..+++||++++..   ++    +      ++++.+...++.  ...+|+|.+|...+..++..........+.|.
T Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~  278 (452)
T PRK11273        199 LVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT  278 (452)
T ss_pred             HHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6544 4445776543210   00    0      000000011221  23578888888776666644444445567777


Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCC--CceehHHH-HHHHHHHHHHhHhhhcccccccCcCceEee
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVS--PRKLISAI-QAMMAVFMISDVLFVKGVYREMGVPDSLYV  304 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (408)
                      |..++.|++..+.+.......++.+++.++.|++.||++  +|+..... ..+..+.... ..        .......+.
T Consensus       279 ~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~-~~--------~~~~~~~~~  349 (452)
T PRK11273        279 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV-YW--------LNPAGNPTV  349 (452)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHH-HH--------HhcccChHH
Confidence            888778999888998888888999999999999999984  33322211 1111111111 11        000111111


Q ss_pred             hhhhHHHHHHHHHh-hhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC
Q 015348          305 LIFSSLLEVMFFFK-ILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIV-SGYLGVALASYTGV  366 (408)
Q Consensus       305 ~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~i-g~~~~g~l~~~~g~  366 (408)
                      ........+..... ......+..|..|++.+|+++|+.+...++++.+ +|.+.|.+.|+.|+
T Consensus       350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~  413 (452)
T PRK11273        350 DMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW  413 (452)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcc
Confidence            11112222222111 1122456679999999999999999999998765 79999999999874

>TIGR00897 2A0118 polyol permease family

Probab=99.97  E-value=2.1e-29  Score=232.96  Aligned_cols=339  Identities=13%  Similarity=0.119  Sum_probs=232.5

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      +.++ +|+|.|+++.|++.+...++..+ +|+.|+++||     +|||+.+..+..+..++.+++........+++.+++
T Consensus        37 ~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-----~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  110 (402)
T TIGR00897        37 SPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-----IGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILL  110 (402)
T ss_pred             HHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----cCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHH
Confidence            4455 67899999999999999988777 9999999999     999999999998888876654321111127888889


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHH-HHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGG-VLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      .|++.|++.+...+...+.+.+..|++         +|+++++..+...++|. +++|.+++.+.+..||+..++.....
T Consensus       111 ~~~i~G~g~~~~~~~~~~~~~~~~~~~---------~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       111 FYGIRGLGYPLFAYSFLVWVVYNTKQD---------NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF  181 (402)
T ss_pred             HHHHHHcchHHHHhHHHHHHHHhCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            999999998887777777888887765         49999999999999997 68999999999888977666654443


Q ss_pred             HHHHHHHh-hhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhH
Q 015348          162 VVLQFFIT-IAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVL  240 (408)
Q Consensus       162 ~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  240 (408)
                      ..+..+.. ++.+|++++++++ ++++.++..+..++.+|+|.++...+..++..........+.|.|. +++|++..+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~  259 (402)
T TIGR00897       182 VLTGGVIALFSNKDIFTPQHMQ-TREKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFV-AELGFSTSEW  259 (402)
T ss_pred             HHHHHHHHHhccCCCCCccccc-CCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCChhHH
Confidence            33333332 3344432222111 1111222233345568899888766655553333333444555555 5589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCceehHH-HHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhh
Q 015348          241 GISKVFGQAAMLLWGVIYNSGLKSVSPRKLISA-IQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKI  319 (408)
Q Consensus       241 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (408)
                      +.......++++++.+..|++.||+++|+.... +.+...+..........     . .....+......+..+.+....
T Consensus       260 ~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~-----~-~~~~~~~~~~~~~~~G~~~~~~  333 (402)
T TIGR00897       260 LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ-----H-FGHSFAVALIIAIALGIFLAGY  333 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH-----c-cCCcHHHHHHHHHHHHHHHHHH
Confidence            988888889999999999999999998876532 22222222111111000     0 0111122333444455555445


Q ss_pred             hhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          320 LPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       320 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .|......+. ++++||+++|+.+...+++..++|.++|.+.|..|.
T Consensus       334 ~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~  379 (402)
T TIGR00897       334 VPLAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGA  379 (402)
T ss_pred             HHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            5555555665 456899999999999999999999999999998764

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12382 putative transporter; Provisional

Probab=99.97  E-value=3.6e-29  Score=231.06  Aligned_cols=324  Identities=15%  Similarity=0.104  Sum_probs=222.8

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHh---cc-CcchH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAIL---SQ-SSISI   77 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~---~~-~~~~~   77 (408)
                      ++.|+++|+|.|++++|++.+...++..+ +|++|+++||     +|||+.+..+.+...++.+.....   +. ...++
T Consensus        38 l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-----~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (392)
T PRK12382         38 IPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-----YGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKF  112 (392)
T ss_pred             hhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-----hcchHHHHHHHHHHHHHHHHHHhhhccccchhHHH
Confidence            35578899999999999999999988777 9999999999     999999999887776655433221   10 12378


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHH
Q 015348           78 FTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLF  157 (408)
Q Consensus        78 ~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i  157 (408)
                      +.+++.|+++|++.+...+...+++.|..|++         +|++++++.+.+.+.|..+||.+++.+.+..||+..+.+
T Consensus       113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~---------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  183 (392)
T PRK12382        113 ALLVVGRLILGFGESQLLTGALTWGLGLVGPK---------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT  183 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc---------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            88999999999999998888888999998865         499999999999999999999999999999999988776


Q ss_pred             HHHHHHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCCh
Q 015348          158 FGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRS  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  237 (408)
                      ..+..++........||+++++   +++.+.++..+.    +.++.+...+ ....    ........+.|.. +.|++.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~l-~~~~----~~~~~~~~~~~~~-~~~~~~  250 (392)
T PRK12382        184 TMVLPLLAWAFNGTVRKVPAHA---GERPSLWSVVGL----IWKPGLGLAL-QGVG----FAVIGTFVSLYFA-SKGWAM  250 (392)
T ss_pred             HHHHHHHHHHHHHhccCCCCCc---ccCchHHHHHHH----HHHhHHHHHH-HHHH----HhHHHHHHHHHHH-hcCCch
Confidence            5554433332222234332211   111122222222    2222221111 1111    1111111222222 234433


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHH
Q 015348          238 SVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFF  317 (408)
Q Consensus       238 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
                        .+.......++.+++.++.+++.||+++|+.+..+..+..+.......           ..+.+.........+++..
T Consensus       251 --~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~~  317 (392)
T PRK12382        251 --AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL-----------APTAWVALAGAALTGAGCS  317 (392)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH-----------cccHHHHHHHHHHHHHHHH
Confidence              455556677788889999999999999999988777666555433211           1111123334444555555


Q ss_pred             hhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          318 KILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       318 ~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ...|. .+...+..|+++||+++|+.++..+++..++|.+.|.+.|+.|+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~  367 (392)
T PRK12382        318 LIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGY  367 (392)
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            55565 67788999999999999999999999999999999999998775

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.97  E-value=9.1e-30  Score=235.67  Aligned_cols=331  Identities=11%  Similarity=0.041  Sum_probs=237.8

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      .+++|+|.|+.+.|++.+...+.+.+ +++.|+++||     +|||+++..+.++..++.+++++++    +++.+++.|
T Consensus        33 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-----~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r  103 (412)
T TIGR02332        33 TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-----IGARRWIAGIMVLWGIASTATMFAT----GPESLYLLR  103 (412)
T ss_pred             hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----hChHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHH
Confidence            57899999999999999999988777 8999999999     9999999999999999999999998    999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh------cCChhhHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID------RFSPPSMFLFF  158 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~------~~g~~~~f~i~  158 (408)
                      ++.|++.+...+...+++.|+.|++         +|++..++.+...++|.++++.+++++.+      ..|||+.|.+.
T Consensus       104 ~l~G~~~~~~~~~~~~~~~~~~~~~---------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~  174 (412)
T TIGR02332       104 ILVGIAEAGFLPGILLYLTFWFPAY---------FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLE  174 (412)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHH
Confidence            9999999999888888899999975         39999999999999999999999998864      36999999998


Q ss_pred             HHHHHHHHHH-hhhcccccccCC---CCCcch--------------------hHHHHHHHHHHhcccchhHHHHHHHHhh
Q 015348          159 GLLVVLQFFI-TIAVRESALKLP---KSQSNV--------------------GIRAQLSELSAALRKPEIMYSVAWFAAS  214 (408)
Q Consensus       159 ~~~~~~~~~~-~~~~~e~~~~~~---~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (408)
                      ++..++..++ ++++||+|++++   +++++.                    +.+...+..++..++|.++...+..++.
T Consensus       175 ~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (412)
T TIGR02332       175 GFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIFTPAIMLYTLAYFCL  254 (412)
T ss_pred             HHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhcChHHHHHHHHHHHH
Confidence            8887766544 445788764321   000000                    0000001112223356666655554443


Q ss_pred             hcccccccceeEEEEEe-ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehH-HHHHHHHHHHHHhHhhhccc
Q 015348          215 YSIIPVLTGTMFFYQTQ-NLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLIS-AIQAMMAVFMISDVLFVKGV  292 (408)
Q Consensus       215 ~~~~~~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  292 (408)
                      ........++.|.++.+ ..|++..+.+.......++.+++.++.+++.||+++|+... ..............      
T Consensus       255 ~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~------  328 (412)
T TIGR02332       255 TNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLAS------  328 (412)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHH------
Confidence            44444455667777655 24678888898899999999999999999999999776432 22222222211110      


Q ss_pred             ccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          293 YREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                          ...+.. .........+.+.....+. .....+..|++++++++|+.+...++|+.++|.+.|.+.|..|
T Consensus       329 ----~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g  397 (412)
T TIGR02332       329 ----ATDHNL-IQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG  397 (412)
T ss_pred             ----hcCCHH-HHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence                011111 1111111112222212232 3444567899999999999999999999999999999998865

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10054 putative transporter; Provisional

Probab=99.97  E-value=1.9e-29  Score=232.23  Aligned_cols=328  Identities=14%  Similarity=0.129  Sum_probs=240.4

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      ++.|+++++|.|+.++|++.+...+...+ +|+.|.++||     +|||+++..+.+...++.+.+.+.+    +++.++
T Consensus        30 l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-----~g~k~~~~~~~~~~~~~~~~~~~~~----~~~~~~  100 (395)
T PRK10054         30 MTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-----FDKKRYMLLAITAFASGFIAIPLVN----NVTLVV  100 (395)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCcchhHHHHHHHHHHHHHHHHHHh----HHHHHH
Confidence            45688899999999999999998866555 9999999999     9999999999998888888888888    888888


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      +.|.+.|.+.+...+...++..|..+++         +|++..++.+...++|.++||.+++.+.+ .+|+..|.+.++.
T Consensus       101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~  170 (395)
T PRK10054        101 LFFALINCAYSVFSTVLKAWFADNLSST---------SKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAIC  170 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHH
Confidence            8898888888877887888888888765         39999999999999999999999999875 6999999998887


Q ss_pred             HHHHHHHh-hhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEE--eccCCChh
Q 015348          162 VVLQFFIT-IAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQT--QNLKIRSS  238 (408)
Q Consensus       162 ~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~  238 (408)
                      .++..+.. +++||++++++++ + +   +. .+.++.+|||.++......++............+.|..  ++.+.+..
T Consensus       171 ~~i~~i~~~~~~~~~~~~~~~~-~-~---~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (395)
T PRK10054        171 SAFPLVFIQIWVQRSEKAIATE-T-G---SV-WSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEK  244 (395)
T ss_pred             HHHHHHHHHHHHhccccccccc-h-h---hh-hhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHH
Confidence            77765443 3365554322111 1 1   11 22245688888877665554422222111111122211  23456677


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHh
Q 015348          239 VLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFK  318 (408)
Q Consensus       239 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
                      ..+.......+......+..+++.||.++|+.+..+..+..+.......         . .+..+.........+++...
T Consensus       245 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~g~~~  314 (395)
T PRK10054        245 VVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIF---------S-GNSLLLWGMSAAVFTVGEII  314 (395)
T ss_pred             HHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHH---------c-chHHHHHHHHHHHHHHHHHH
Confidence            7787777777777777888899999999988877776555544333211         0 11222333445566666666


Q ss_pred             hhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          319 ILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       319 ~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ..|. .+.+.+..|++.++++++..+ ...+|..+||.++|.+.|+.|.
T Consensus       315 ~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~  362 (395)
T PRK10054        315 YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPP  362 (395)
T ss_pred             HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcCh
Confidence            6677 778899999999999998754 6779999999999999999875

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.97  E-value=3.1e-30  Score=237.20  Aligned_cols=339  Identities=16%  Similarity=0.142  Sum_probs=244.6

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      .++++++|.|+.+.|++.+...++..+ +++.|+++||     +|||+.+..+..+..++.+++.+.+    +++.+++.
T Consensus        19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~   89 (379)
T TIGR00881        19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-----SNPRVFLPIGLILCAIVNLFFGFST----SLWVMAAL   89 (379)
T ss_pred             HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-----hCCeehhHHHHHHHHHHHHHHHHhh----hHHHHHHH
Confidence            467789999999999999999987777 9999999999     9999999999999999999999998    99999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHH-HHHHHHhhcCChhhHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGN-LLVGFAIDRFSPPSMFLFFGLLV  162 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~-~l~~~l~~~~g~~~~f~i~~~~~  162 (408)
                      |++.|++.+...+...+++.|+.|+++         |++..++.+...++|..+++ .+++.+.+..+||+.|++.+++.
T Consensus        90 ~~~~g~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T TIGR00881        90 WALNGIFQGMGWPPCGRTVTKWFSRSE---------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA  160 (379)
T ss_pred             HHHHHhhccccCCchHHHHHHhcCHhh---------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            999999999999999999999998754         88889999999999999999 57777778889999999888777


Q ss_pred             HHHHHHh-hhcccccccCCC-------CCc-------c-hhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeE
Q 015348          163 VLQFFIT-IAVRESALKLPK-------SQS-------N-VGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMF  226 (408)
Q Consensus       163 ~~~~~~~-~~~~e~~~~~~~-------~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (408)
                      ++..+.. ++.||++++++.       +++       + ++.++.....++.+++|.++...+..++..........+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (379)
T TIGR00881       161 IIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSP  240 (379)
T ss_pred             HHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6654443 346654332110       000       0 00011112234557888888776666554444444455566


Q ss_pred             EEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehh
Q 015348          227 FYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLI  306 (408)
Q Consensus       227 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (408)
                      .|..+..|+++.+.+.......++.+++.++.+++.||..+++..................+ .     ...........
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~  314 (379)
T TIGR00881       241 LYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY-W-----LNPAANPLMDL  314 (379)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH-h-----cCcchhHHHHH
Confidence            67777789999999999999999999999999999998643332222222111111111100 0     00001111122


Q ss_pred             hhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          307 FSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       307 ~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      ...+..+.......+. .....|..|+++||++.|+.+...+++..++|.+.|.+.|..|++
T Consensus       315 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  376 (379)
T TIGR00881       315 ICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA  376 (379)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence            2222333322222233 567889999999999999999999999999999999999988864

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.97  E-value=7.7e-29  Score=228.58  Aligned_cols=326  Identities=18%  Similarity=0.199  Sum_probs=242.3

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      .+++++|.|+++.+++.+...++..+ ++++|+++||     +|||+++..+.++..++.+.+.+.+    +++.+++.|
T Consensus        30 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  100 (385)
T TIGR00710        30 EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-----YGRRPVLLLGLFIFALSSLGLALSN----NIETLLVLR  100 (385)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-----cCChHHHHHHHHHHHHHHHHHHHHc----cHHHHHHHH
Confidence            46789999999999999999987777 9999999999     9999999999999999999998888    999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVL  164 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~  164 (408)
                      ++.|++.+...+..++++.|+.|++         +|++.++..+...++|..+++.+++.+.+..+||..|++.++..++
T Consensus       101 ~l~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~  171 (385)
T TIGR00710       101 FVQAFGASAGSVISQALVRDIYPGE---------ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGIL  171 (385)
T ss_pred             HHHHcchhHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999865         4999999999999999999999999999999999999998887776


Q ss_pred             HHHHhh-hcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHH
Q 015348          165 QFFITI-AVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGIS  243 (408)
Q Consensus       165 ~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  243 (408)
                      ..+... +.||+++++++    ++.++..++.++.+|+|.++...+...+............+.+..++.|.++.+.+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  247 (385)
T TIGR00710       172 LSALIFFILPETLPYEAR----IQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLL  247 (385)
T ss_pred             HHHHHHHhCCCCCCCccc----CCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHH
Confidence            655444 46665443322    1123334455566888888876655544333333334444555666789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-
Q 015348          244 KVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-  322 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  322 (408)
                      .....++.+++.++.+++.||+++|+.+..+.....+..........     . ...............+++.....+. 
T Consensus       248 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~g~~~~~~~~~~  321 (385)
T TIGR00710       248 FALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI-----L-GLGSWAMIIGPMMFVGIGNSMISSIA  321 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-----h-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988877765555544333211000     0 0011112222334444555444555 


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          323 SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVAL  360 (408)
Q Consensus       323 ~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l  360 (408)
                      .....|..| ++++++.++.+.....++.+.+.+.+.+
T Consensus       322 ~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       322 MAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI  358 (385)
T ss_pred             HHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            556666665 6789999999888776555555545533

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=7.2e-29  Score=229.09  Aligned_cols=324  Identities=16%  Similarity=0.136  Sum_probs=232.1

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      .+.+++|.|+.+.++..+...++..+ +|+.|+++||     +|||+++..+.+...++...+...+    +++.+++.|
T Consensus        28 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-----~g~r~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~   98 (392)
T PRK10473         28 RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-----SGRKPVAIPGAALFIIASLLCSLAE----TSSLFLAGR   98 (392)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-----hCChHHHHHHHHHHHHHHHHHHHhC----cHHHHHHHH
Confidence            35688999999999999999988777 8999999999     9999999999999999999888888    889999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVL  164 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~  164 (408)
                      ++.|++.+...+...+++.|..|+++         |++..+..+...++|..++|.+++.+.+..+||+.|++.+...++
T Consensus        99 ~l~g~~~~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i  169 (392)
T PRK10473         99 FLQGIGAGCCYVVAFAILRDTLDDRR---------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGIL  169 (392)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHH
Confidence            99999999988888899999988753         999999999999999999999999988889999999998887776


Q ss_pred             HHHHh-hhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHH
Q 015348          165 QFFIT-IAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGIS  243 (408)
Q Consensus       165 ~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  243 (408)
                      ..+.. ..+||++++++++ + .+   ..++.++.++||.++...+...+............+.+..+++|+++.+.+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  244 (392)
T PRK10473        170 VLLLSLFILKETRPARAPA-A-SS---KPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAII  244 (392)
T ss_pred             HHHHHHHHcCCCCCcccCC-c-cc---hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHH
Confidence            65544 4467765433221 1 11   12233455778876655444333222222223333445556789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhHH
Q 015348          244 KVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFS  323 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (408)
                      .....++.+++.++.+++.||+++|+.+..+.....+........         ....  ...........+.....+ .
T Consensus       245 ~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~l~~~g~~~~~~-~  312 (392)
T PRK10473        245 MALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS---------PSHA--VSLFGITLICAGFSVGFG-V  312 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH---------HHHH--HHHHHHHHHHHHHHHHhH-H
Confidence            999999999999999999999999988877766555443332210         0011  111111111122111111 2


Q ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          324 VYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       324 ~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      ....+..|.++++   |..++..+++..+++.+++++.++.|..
T Consensus       313 ~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~  353 (392)
T PRK10473        313 AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGIS  353 (392)
T ss_pred             HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3445556655543   4445566788888999999999988753

>PRK03699 putative transporter; Provisional

Probab=99.97  E-value=2.5e-29  Score=231.94  Aligned_cols=326  Identities=12%  Similarity=0.078  Sum_probs=236.5

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      .+++++|+|+++.+++.+...+++.+ +++.|+++||     +|||+.+..+.++..++.+++.+.+    +++.+++.|
T Consensus        32 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-----~g~r~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~  102 (394)
T PRK03699         32 PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-----IPLKRQLIFGFALMILAVAGLMFSH----SLALFSIAM  102 (394)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHcc----hHHHHHHHH
Confidence            45689999999999999999888777 8999999999     9999999999999999999988888    899999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh-cCChhhHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID-RFSPPSMFLFFGLLVV  163 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~-~~g~~~~f~i~~~~~~  163 (408)
                      ++.|++.+...+...+.+.|..|++         +|++..+..+...++|..++|.+.+.+.+ ..|||+.|.+.+++.+
T Consensus       103 ~l~G~~~g~~~~~~~~~i~~~~~~~---------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~  173 (394)
T PRK03699        103 FVLGVVSGITMSIGTFLITHVYEGK---------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYV  173 (394)
T ss_pred             HHHHHhhHhhccchhHHhhhhcccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            9999999998888889999998764         48888888888888999999998888764 5799999998888776


Q ss_pred             HHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHH
Q 015348          164 LQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGIS  243 (408)
Q Consensus       164 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  243 (408)
                      +..+..++.+.++.++++++++   ++..++    ..++.++...+..++..........+.|.|..+.+|+|+.+.+..
T Consensus       174 ~~~~~~~~~~~p~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~  246 (394)
T PRK03699        174 AIFILTLFSEFPALGKHAPKAD---KPVAKE----KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNL  246 (394)
T ss_pred             HHHHHHHhcCCccccccCcccc---Cccccc----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHH
Confidence            6654443322221111111010   000111    123444544444443233333445667777778889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-
Q 015348          244 KVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-  322 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  322 (408)
                      .....++..++.++.+++.||+++|+.+.....+..+......           ...+........+..++......|. 
T Consensus       247 ~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~G~~~~~~~~~~  315 (394)
T PRK03699        247 VSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV-----------NTDDPSHLLYAILGLGFFSSAIYTTI  315 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH-----------HcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            9888899999999999999999999887765544443322211           0111112233344445544444455 


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015348          323 SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTG  368 (408)
Q Consensus       323 ~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~  368 (408)
                      .+...+..|+ .+++..|......++|..++|.+.|.+.|..|...
T Consensus       316 ~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~  360 (394)
T PRK03699        316 ITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQA  360 (394)
T ss_pred             HHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchh
Confidence            5566676664 45777888899999999999999999999888643

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.97  E-value=4.3e-28  Score=228.48  Aligned_cols=348  Identities=13%  Similarity=0.144  Sum_probs=242.3

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhc-ccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCc--chHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSS--ISIFT   79 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~   79 (408)
                      +.+|+++.+|+|+.++|.+..+.. +..+.+|++|.++||+++|+.+|||+++.+.+..+++..++...+..+  ..++.
T Consensus        29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~  108 (473)
T PRK10429         29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVF  108 (473)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHH
Confidence            567888999999999999999988 456669999999999998888889999999999888877765543111  12455


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-------CChh
Q 015348           80 MSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR-------FSPP  152 (408)
Q Consensus        80 ~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~-------~g~~  152 (408)
                      +++..++.+++.++.+++..++..|++++++        +|.+..++.....++|..+.+.+...+.+.       .+|+
T Consensus       109 ~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~--------eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~  180 (473)
T PRK10429        109 VCVTYILWGMTYTIMDIPFWSLVPTLTLDKR--------EREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQ  180 (473)
T ss_pred             HHHHHHHHHHHHHHHcchHHhhhHHhCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence            6667778899999999999999999997765        599999988888888877766555443222       2466


Q ss_pred             hHHHHHHHHHHHHHHHhhh-cccccccCC---CCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEE
Q 015348          153 SMFLFFGLLVVLQFFITIA-VRESALKLP---KSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFY  228 (408)
Q Consensus       153 ~~f~i~~~~~~~~~~~~~~-~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (408)
                      ....+.+++.++..+..++ .||++.++.   +++++.+.++.++.   .++||.++..+...++.+...........+|
T Consensus       181 ~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~---~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~  257 (473)
T PRK10429        181 MFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVAL---IYKNDQLSCLLGMALAYNIASNIINGFAIYY  257 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHHHhhheeeE
Confidence            6666666666655544444 777643221   11122234444433   4789988887777666454444444455555


Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      .++..+ +....+.+.....++.+++.++.+++.||+|+|+.+..+..+..+..+......      ...+...+.....
T Consensus       258 ~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~  330 (473)
T PRK10429        258 FTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMG------LAAPHNALLIVIA  330 (473)
T ss_pred             EEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh------ccCchhHHHHHHH
Confidence            555554 566677777777788999999999999999999998777655444333221100      0011222233334


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcC-------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCP-------PGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTG  368 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p-------~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~  368 (408)
                      .+..+++.+...+. .++++|.+|       .+.+|..+|..+....++..+++.+.|.+.+..|++.
T Consensus       331 ~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~~  398 (473)
T PRK10429        331 GILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYVP  398 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            44455555544454 778888866       4557789999999999999999999999999999854

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.97  E-value=5e-29  Score=229.76  Aligned_cols=349  Identities=15%  Similarity=0.154  Sum_probs=226.4

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhc-ccccccchheeecccccccCCcchhHH-HHHHHHHHHHHHHHHHhccCcchHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQHRVPYI-AIGAFLQAVSWLAIAILSQSSISIFTM   80 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~grk~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (408)
                      ++.|+++++|.|++++|++.+... ..+.++++.|.++||     +||||.+ ..+.+...++..+..+++    +++.+
T Consensus        38 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr-----~g~r~~~~~~~~~~~~~~~~~~~~~~----~~~~l  108 (393)
T PRK15011         38 LSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDK-----RGDRKSLIVFCCLLGVLACTLFAWNR----NYFVL  108 (393)
T ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccchhHHHHHHHHHHHHHHHHHHHhh----HHHHH
Confidence            567889999999999999987665 566666666555999     8888764 555666666777777777    88887


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGL  160 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~  160 (408)
                      ++.+.+.+...+...+..+++..+..++++  +     ..+..++..+.+.++|.++||.+++.+.+++|||..|++.++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~  181 (393)
T PRK15011        109 LFVGVFLSSFGSTANPQMFALAREHADKTG--R-----EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAV  181 (393)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhhcc--c-----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHH
Confidence            666555555555667777777777665443  1     235566788889999999999999999999999999999888


Q ss_pred             HHHHHHHHhh-hcccccccCCCCCcchhHHHHHHHHHHhccc-chhHHHHHHHHhhhcccccccceeEEEEEeccCCChh
Q 015348          161 LVVLQFFITI-AVRESALKLPKSQSNVGIRAQLSELSAALRK-PEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSS  238 (408)
Q Consensus       161 ~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  238 (408)
                      ..++..+... ++||+++++++.++  +.    +..   .++ +..+.........+..........+.|.++++|.++.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~  252 (393)
T PRK15011        182 AFIVCGVMVWLFLPSMRKELPLATG--TL----EAP---RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEK  252 (393)
T ss_pred             HHHHHHHHHHhhcCccCCCCccccc--cc----ccc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            7776655544 47776543222111  10    111   112 2223222222222222222334455666677899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHh
Q 015348          239 VLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFK  318 (408)
Q Consensus       239 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
                      +.+.+.....+..+++.++.|++.||+++|+.+..+.......... ..        .  ....+.........++..+.
T Consensus       253 ~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~-~~--------~--~~~~~~~l~~~~l~~~~~g~  321 (393)
T PRK15011        253 LAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAG-ML--------M--AHSPAILLGLQLLNAIYIGI  321 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH-HH--------H--HhhHHHHHHHHHHHHHHHHH
Confidence            9998887777888889999999999999998766554433322211 11        0  01111122222222222222


Q ss_pred             hhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHhhhhhhhhhhhccC
Q 015348          319 ILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMP  396 (408)
Q Consensus       319 ~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (408)
                      ..+. ....+|..|+ ++|++.++++...++|..++|.++|.+.|+.|+.        ..+.++.++.++.+...++.|
T Consensus       322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~  391 (393)
T PRK15011        322 LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYH--------AVFWFALVMIIATLFCLLRIK  391 (393)
T ss_pred             HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHHHHhhc
Confidence            2233 5567788875 5999999999999999999999999999987642        233344444445555555554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=8.7e-29  Score=227.52  Aligned_cols=322  Identities=16%  Similarity=0.180  Sum_probs=232.1

Q ss_pred             hhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 015348            7 LKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLL   85 (408)
Q Consensus         7 l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (408)
                      +.+++|+|+++.+++.+...++..+ ++++|.++||     +|||+++..+.++..++...+.+.+    +++.+++.|+
T Consensus        17 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-----~g~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~   87 (377)
T PRK11102         17 IAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-----FGRKPVILGGTLVFALAAVACALAQ----TIDQLIYMRF   87 (377)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-----cCChHHHHHHHHHHHHHHHHHHHHc----cHHHHHHHHH
Confidence            4578999999999999999987777 9999999999     9999999999999999999998888    8999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q 015348           86 LSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQ  165 (408)
Q Consensus        86 l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~  165 (408)
                      +.|++.+...+..++++.|+.|++         +|++.+++.+....+|..++|.+++.+.+..+||+.|++.+.+.++.
T Consensus        88 l~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  158 (377)
T PRK11102         88 LHGLAAAAASVVINALMRDMFPKE---------EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILA  158 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            999999999999999999998865         39999999999999999999999999999999999999988877776


Q ss_pred             HHHh-hhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHH
Q 015348          166 FFIT-IAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISK  244 (408)
Q Consensus       166 ~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~  244 (408)
                      .+.. +++||+++++++  ++.+.++..++.++.+++|..+...+...+............++++.+..|+++.+.|...
T Consensus       159 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~  236 (377)
T PRK11102        159 AALVFFFIPETLPKERR--QPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYF  236 (377)
T ss_pred             HHHHHHhCCccCccccc--CCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHH
Confidence            5443 456775433222  1112333445555668888877666555443333333334445556667899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-H
Q 015348          245 VFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-S  323 (408)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  323 (408)
                      ....++.+++.++.+++.||+++|+.+..+.....+..+.......       .+...+...........+.....+. .
T Consensus       237 ~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (377)
T PRK11102        237 ALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL-------LDLGFWALVVGVAAFVGCVSMISSNAM  309 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            9999999999999999999999999887776554433222111000       0011111111111122222222222 4


Q ss_pred             HHHHHhcCCchhHHHHHHHHHHHH-HHHHHHHHH
Q 015348          324 VYIAQVCPPGCEGSIMAFVMSAVA-LAFIVSGYL  356 (408)
Q Consensus       324 ~~~~~~~p~~~~g~~~g~~~~~~~-lg~~ig~~~  356 (408)
                      ....|..| +.+|++.++.+.... ++..+++.+
T Consensus       310 ~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        310 AVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             HHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            45556555 788999998776643 444455444

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=3.5e-29  Score=241.70  Aligned_cols=358  Identities=12%  Similarity=0.034  Sum_probs=242.3

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      .+++++|+++.+.+++.++..++.++ ++++|+++||     +|||+.++++.++.+++.+++++++    +++.+++.|
T Consensus       192 ~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-----~GRR~~lii~lil~~i~~ll~afa~----s~~~llv~R  262 (742)
T TIGR01299       192 SAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-----LGRKQCLLICLSVNGFFAFFSSFVQ----GYGFFLFCR  262 (742)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHH
Confidence            45678999999999999999988877 8999999999     9999999999999999999999888    999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-------------CCh
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR-------------FSP  151 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~-------------~g~  151 (408)
                      ++.|++.+...+...+++.|+.|++         .|++..++...+..+|.++++.++..+...             .+|
T Consensus       263 ~l~G~g~g~~~p~~~~~isE~~p~~---------~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gW  333 (742)
T TIGR01299       263 LLSGFGIGGAIPIVFSYFAEFLAQE---------KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSW  333 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccH
Confidence            9999999999999999999999975         499999999999999999999888776543             368


Q ss_pred             hhHHHHHHHHHHHHHHHhhhcccccccCCCCC-----------------c----chh------HHH--------------
Q 015348          152 PSMFLFFGLLVVLQFFITIAVRESALKLPKSQ-----------------S----NVG------IRA--------------  190 (408)
Q Consensus       152 ~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~-----------------~----~~~------~~~--------------  190 (408)
                      |+.+++.++..++.++..+++||+|+....+.                 +    ..+      .+.              
T Consensus       334 R~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (742)
T TIGR01299       334 RVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDT  413 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccc
Confidence            99999888877777766777999865311000                 0    000      000              


Q ss_pred             -----------------HHHHHHHhcccchhHHHHHHH---HhhhcccccccceeEEEEE--------------------
Q 015348          191 -----------------QLSELSAALRKPEIMYSVAWF---AASYSIIPVLTGTMFFYQT--------------------  230 (408)
Q Consensus       191 -----------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------------------  230 (408)
                                       .+.++++.++.+.....++..   +...+.......+.|....                    
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~  493 (742)
T TIGR01299       414 GTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVA  493 (742)
T ss_pred             cchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchh
Confidence                             001122333333322222111   1111111112222111000                    


Q ss_pred             ------------------------------------------------------------------e-------------
Q 015348          231 ------------------------------------------------------------------Q-------------  231 (408)
Q Consensus       231 ------------------------------------------------------------------~-------------  231 (408)
                                                                                        +             
T Consensus       494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  573 (742)
T TIGR01299       494 HFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQN  573 (742)
T ss_pred             ccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhh
Confidence                                                                              0             


Q ss_pred             ------ccCCC---------hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhccccccc
Q 015348          232 ------NLKIR---------SSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREM  296 (408)
Q Consensus       232 ------~~g~~---------~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (408)
                            ..|.+         .........+..++.+++.++.+++.||+|+|+++..+.++.+++.+...+         
T Consensus       574 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~---------  644 (742)
T TIGR01299       574 CSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSF---------  644 (742)
T ss_pred             ccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH---------
Confidence                  00000         011234466777899999999999999999999988877776666544221         


Q ss_pred             CcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchH
Q 015348          297 GVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLP  375 (408)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~  375 (408)
                       .++.. .++...++.++......+. .++++|..|++.|++++|+.++..++|.+++|.++|.+.+...         .
T Consensus       645 -~~s~~-~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~---------~  713 (742)
T TIGR01299       645 -GNSES-AMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITK---------A  713 (742)
T ss_pred             -HccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------H
Confidence             01111 1222222333333333344 8899999999999999999999999999999999998876421         2


Q ss_pred             HHHHHHHhhhhhhhhhhhccCCCCCC
Q 015348          376 LALIIQAVCTILPLYWSYFMPDGVKS  401 (408)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (408)
                      ..+.+++++.+++.+...++||++++
T Consensus       714 ~pf~i~a~~lll~~ll~~~LPET~~~  739 (742)
T TIGR01299       714 APILFASAALACGGLLALKLPDTRGQ  739 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            33344444444555555567876653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=2.2e-28  Score=226.43  Aligned_cols=330  Identities=14%  Similarity=0.081  Sum_probs=237.4

Q ss_pred             hhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 015348            7 LKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLL   85 (408)
Q Consensus         7 l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (408)
                      +.+++|.|..+.++..+++.+++.+ ++++|+++||     +|||+++..+..+..++.+++.+++    +++.+++.|+
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-----~Grr~~l~~~~~~~~~~~~~~~~a~----~~~~l~~~r~  112 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-----IGRRPVLITGALIFTLACAATLFTT----SMTQFLIARF  112 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----cCchHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHH
Confidence            5689999999999999999988777 9999999999     9999999999999999999999988    9999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q 015348           86 LSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQ  165 (408)
Q Consensus        86 l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~  165 (408)
                      ++|++.+...+...+.+.|..+++         ++++.++......++|..+||.+++.+.+..|||+.|++.++..++.
T Consensus       113 l~Gi~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~  183 (413)
T PRK15403        113 IQGTSICFIATVGYVTVQEAFGQT---------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA  183 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            999999877777778888888765         38888999999999999999999999999899999999998887776


Q ss_pred             HHH-hhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHH
Q 015348          166 FFI-TIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISK  244 (408)
Q Consensus       166 ~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~  244 (408)
                      .+. .+.+||+++++++   +.+.++..++.++.+|||.++...+...+............|.+..+..|+++.+.++..
T Consensus       184 ~~~~~~~lp~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~  260 (413)
T PRK15403        184 FVGLLLAMPETVKRGAV---PFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQ  260 (413)
T ss_pred             HHHHHHhCCCCccccCC---CCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHH
Confidence            654 3447876543221   112333455666779999998877665554444444444556677777899999999988


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhHHH
Q 015348          245 VFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSV  324 (408)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (408)
                      .....+.+++..+.+++.+|..+++.......+..+....... ...    . .++.++.........+.+.....|...
T Consensus       261 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~-~~~----~-~~~~~~~~~~~~~l~~~G~~~~~p~~~  334 (413)
T PRK15403        261 VPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIV-GNL----L-WPHVWLWSVLGTSLYAFGIGLIFPTLF  334 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHH-HHH----H-ccccHHHHHHHHHHHHHHHHHHhHHHH
Confidence            8788888888888888775554444432222111111111110 000    0 112211123334444555554555522


Q ss_pred             HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          325 YIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       325 ~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                      ......++..+|++.|+.+.....+...++...|++.++
T Consensus       335 ~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        335 RFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             HHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            122222334579999999999999999999999988776

>TIGR00901 2A0125 AmpG-related permease

Probab=99.97  E-value=4.7e-29  Score=227.35  Aligned_cols=326  Identities=15%  Similarity=0.110  Sum_probs=227.8

Q ss_pred             hhhccCCCHHHHHHHHHhhcccccccchheeecccccccCCcchhH-HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 015348            7 LKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPY-IAIGAFLQAVSWLAIAILSQSSISIFTMSLFLL   85 (408)
Q Consensus         7 l~~~l~~s~~~~g~~~~~~~~~~~~~~~~G~l~Dr~~~~~~grk~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (408)
                      +.+|+|+|.+|+|+.... .+++.+++++|+++||++.++.||||. ++.+.+..+++...+++.+. ..+.+.+....+
T Consensus        14 ~~~~~g~s~~~~g~~~~~-~~~~~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~-~~~l~~l~~~~~   91 (356)
T TIGR00901        14 WLRSKNVSLKTIGFFSLV-GLPYSLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP-STDLPLLAGLAF   91 (356)
T ss_pred             HHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-chhHHHHHHHHH
Confidence            346889999999999755 556666999999999976665577775 67777777777777766642 236777778888


Q ss_pred             HHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC--------hhhHHHH
Q 015348           86 LSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS--------PPSMFLF  157 (408)
Q Consensus        86 l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g--------~~~~f~i  157 (408)
                      +.+++.+..+++.++++.|+.|++         +|+++.++...+.++|.++++.+++.+.+..+        ||..|++
T Consensus        92 ~~~~~~~~~~~~~~a~~~~~~~~~---------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        92 LIAFFSATQDIALDAWRLEILSDE---------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHh---------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            889999999999999999999875         49999999999999999999999999988888        9999999


Q ss_pred             HHHHHHHHHHHhhh-cccccccCCCCCcchhHHHHHHHHHHhcccch---hHHHHHHHHhhhcccccccceeEEEEEecc
Q 015348          158 FGLLVVLQFFITIA-VRESALKLPKSQSNVGIRAQLSELSAALRKPE---IMYSVAWFAASYSIIPVLTGTMFFYQTQNL  233 (408)
Q Consensus       158 ~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (408)
                      .++..++..+..++ .||++++++++  +++.++..+..++.+++|.   ++...+..++............++|..+ .
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~  239 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQEDASVP--KPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-M  239 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccccc--hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c
Confidence            98877776655554 56653322111  1111222233444566665   5555544444333333444556666655 8


Q ss_pred             CCChhhHHHHHHHHH-HHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccc-cccCcCceEeehhhhHHH
Q 015348          234 KIRSSVLGISKVFGQ-AAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVY-REMGVPDSLYVLIFSSLL  311 (408)
Q Consensus       234 g~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  311 (408)
                      |+++++.+......+ ++.+++.++.+++.||+++|+.+..+.++.++......++....+ ...+.++ .+.+....+.
T Consensus       240 g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l  318 (356)
T TIGR00901       240 GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH-LLMLFLTITL  318 (356)
T ss_pred             CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch-HHHHHHHHHH
Confidence            999999998776655 678899999999999999988887777666554433222111100 0001111 1233334444


Q ss_pred             HHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHH
Q 015348          312 EVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVA  347 (408)
Q Consensus       312 ~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~  347 (408)
                      .+++.....+. .++.+|.+|+++||+++|+.++..+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       319 EAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            45555545555 8999999999999999999988765

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.97  E-value=4.8e-29  Score=229.03  Aligned_cols=322  Identities=15%  Similarity=0.094  Sum_probs=234.3

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHH----HHHHHHHHHHHHHHHHhccCcchHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYI----AIGAFLQAVSWLAIAILSQSSISIF   78 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l----~~~~~~~~~~~~~~~~~~~~~~~~~   78 (408)
                      +.|+ +|+|.|++|+|++.+...+...+ +|++|+++||     +||++..    ..+..+..+  .....++    +++
T Consensus        28 ~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-----~~~~~~~~~~~~~~~~l~~~--~~~~~~~----~~~   95 (382)
T TIGR00902        28 PAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-----ANHIIIALRLLALASAIFAA--AFSAGAH----NAW   95 (382)
T ss_pred             HHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHHHHH--HHHHhhh----hHH
Confidence            4566 67899999999999998866555 9999999999     8874432    222222221  2233455    899


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHH
Q 015348           79 TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFF  158 (408)
Q Consensus        79 ~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~  158 (408)
                      .+++.|.+.+.+.+...+..+++..+. +  +        +|++..+......++|.+++|.+++.+.+++|||..|.+.
T Consensus        96 ~l~~~~~l~~~~~~~~~p~~~al~~~~-~--~--------~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        96 LLFIAIGLFALFFSAGMPIGDALANTW-Q--K--------QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHH-H--H--------HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            999999999988888888887876554 2  2        3777788888899999999999999999999999999887


Q ss_pred             HHHHHHHHHHhhhcccc-cccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCCh
Q 015348          159 GLLVVLQFFITIAVRES-ALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRS  237 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  237 (408)
                      +....+..+ .+.++|+ ++++++++++   ++..++.++.+|||+++...+..++............++|.+ +.|.++
T Consensus       165 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~  239 (382)
T TIGR00902       165 TAGLAFMLI-GFLIKPTIPPKDAIPEDE---SQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISA  239 (382)
T ss_pred             HHHHHHHHH-HHHcCCCCCCCccccccc---cccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCH
Confidence            655333332 3333433 2221111111   111233456689999988887776655555555555666664 489999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHH
Q 015348          238 SVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFF  317 (408)
Q Consensus       238 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
                      .+.|.......++.+++..+.+++.||++.|+.+..+.+...+.....           ...++.+.+.......++..+
T Consensus       240 ~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~q~l~g~~~~  308 (382)
T TIGR00902       240 SATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAII-----------GAIEAFPLIFLLQILHCGTFA  308 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHH-----------HhHhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887777776654442           122333345555677777766


Q ss_pred             hhhhH-HHHHHHhcCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC
Q 015348          318 KILPF-SVYIAQVCPPGCEGSIMAFVMS-AVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       318 ~~~~~-~~~~~~~~p~~~~g~~~g~~~~-~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      ...+. ..++++. |++++++.++++++ ...+|..++|.++|.+.|+.|
T Consensus       309 ~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g  357 (382)
T TIGR00902       309 VCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG  357 (382)
T ss_pred             HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            66666 7788887 99999999999875 567999999999999999886

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.97  E-value=5.1e-29  Score=235.95  Aligned_cols=314  Identities=15%  Similarity=0.116  Sum_probs=210.2

Q ss_pred             Hhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHH--------HHHHHHHHHHHHHH
Q 015348           23 NSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFT--------MSLFLLLSNLGASI   93 (408)
Q Consensus        23 ~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~g~~~~~   93 (408)
                      ++..+++.+ ++++|+++||     +|||+.+..+.++.+++.+++++++    +++.        +++.|+++|++.+.
T Consensus        64 ~~~~l~~~ig~~~~G~l~Dr-----~Grr~~l~~~~~l~~i~~~~~a~~~----~~~~~g~~a~~~l~~~R~l~G~g~g~  134 (490)
T PRK10642         64 SVPFLIRPLGGLFFGMLGDK-----YGRQKILAITIVIMSISTFCIGLIP----SYATIGIWAPILLLLCKMAQGFSVGG  134 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHhHhHh
Confidence            444466666 8999999999     9999999999999999999999998    7654        88999999999999


Q ss_pred             HHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh--------hcCChhhHHHHHHHHHHHH
Q 015348           94 AEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAI--------DRFSPPSMFLFFGLLVVLQ  165 (408)
Q Consensus        94 ~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~--------~~~g~~~~f~i~~~~~~~~  165 (408)
                      ..+...+++.|+.|+++         ||+..++...+..+|..+|+.+...+.        ..+|||++|++.+++.++.
T Consensus       135 ~~~~~~~~~~e~~p~~~---------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~  205 (490)
T PRK10642        135 EYTGASIFVAEYSPDRK---------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG  205 (490)
T ss_pred             hHHHHHHHHHHhCCCCC---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH
Confidence            99999999999999764         999999888888888888876655443        2579999999977665554


Q ss_pred             HHHhhhcccccccCCCCC-----cch----hHHHHHHHHHHhccc-chhHHHH-HHHHhhhcccccccceeEEEEEeccC
Q 015348          166 FFITIAVRESALKLPKSQ-----SNV----GIRAQLSELSAALRK-PEIMYSV-AWFAASYSIIPVLTGTMFFYQTQNLK  234 (408)
Q Consensus       166 ~~~~~~~~e~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g  234 (408)
                      .++...+||+++...+.+     +++    +.+..++   +.+++ +..+... ...++..........+.+.|..+.+|
T Consensus       206 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g  282 (490)
T PRK10642        206 LYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFK---EIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLH  282 (490)
T ss_pred             HHHHHcCCCChhHHHHHHhhhhhccccccccccCCHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            444455788654211100     000    0011122   22322 1111111 11122122333344456666666788


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHH
Q 015348          235 IRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVM  314 (408)
Q Consensus       235 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (408)
                      ++....+.......++.+++.++.+++.||+|+|+.+..+.+...+.........        .......+....+..++
T Consensus       283 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~  354 (490)
T PRK10642        283 YSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI--------NSNVIGLIFAGLLMLAV  354 (490)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHH
Confidence            8888777777778888999999999999999999887666543332222111100        00111122222232333


Q ss_pred             HHHhhh-hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          315 FFFKIL-PFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       315 ~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      ...... ....+..+..|++.||+..|........++.++|.+.|++.+..+
T Consensus       355 ~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~  406 (490)
T PRK10642        355 ILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ  406 (490)
T ss_pred             HHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            222222 336677889999999999998766777778899999999987654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.97  E-value=3.6e-29  Score=232.61  Aligned_cols=327  Identities=16%  Similarity=0.207  Sum_probs=230.7

Q ss_pred             hhhhhhccCCCHHH-----HHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchH
Q 015348            4 NFFLKDSLNVDPST-----LQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISI   77 (408)
Q Consensus         4 ~~~l~~~l~~s~~~-----~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~   77 (408)
                      +.|. +++|.|+.+     .|++.+...+...+ +|++|+++||     +|||+.+..+.+...++.+++.+.+    ++
T Consensus        38 ~~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~  107 (408)
T PRK09874         38 PLYV-EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-----KGRKIMLLRSALGMGIVMVLMGLAQ----NI  107 (408)
T ss_pred             HHHH-HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hCcHHHHHHHHHHHHHHHHHHHHHh----hH
Confidence            3444 578888654     47888888776666 9999999999     9999999999999888888888887    89


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHH
Q 015348           78 FTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLF  157 (408)
Q Consensus        78 ~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i  157 (408)
                      +.+++.|++.|++.+.. +...+.+.+..|++         +|++.++......++|..++|.+++.+.+..+||+.|++
T Consensus       108 ~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  177 (408)
T PRK09874        108 WQFLILRALLGLLGGFV-PNANALIATQVPRN---------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI  177 (408)
T ss_pred             HHHHHHHHHHHHhhhhH-HhHHHHHHHhcCHh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            99999999999987654 55667888887765         489999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh-hcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHH-HHhhhcccccccceeEEEEEeccCC
Q 015348          158 FGLLVVLQFFITI-AVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAW-FAASYSIIPVLTGTMFFYQTQNLKI  235 (408)
Q Consensus       158 ~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~  235 (408)
                      .++..++..+... ++||++++.+++ +    +...++..+.+++|..+..... .+.............+.|..+..+.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
T PRK09874        178 TASVLFLCFLVTLFCIRENFQPVSKK-E----MLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGN  252 (408)
T ss_pred             HHHHHHHHHHHHHHHhccCcccccch-h----hhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8887776655444 466654322211 1    1122344455777776543322 2221222112222233333332221


Q ss_pred             Ch---hhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHH
Q 015348          236 RS---SVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLE  312 (408)
Q Consensus       236 ~~---~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
                      ..   ...+......+++.+++.+..+++.||+++|+.+..+.....+..+....           ....+......+..
T Consensus       253 ~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~  321 (408)
T PRK09874        253 VSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSF-----------VQTPLQLGILRFLL  321 (408)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHH
Confidence            11   12455566667888888899999999999999887776655443332111           11122333444555


Q ss_pred             HHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          313 VMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       313 ~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      +++.+...|. .+.+.+..|++++|+.+++.+...++|..+||.++|.+.+..|+
T Consensus       322 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~  376 (408)
T PRK09874        322 GAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGF  376 (408)
T ss_pred             HhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcch
Confidence            6666656666 77788889999999999999999999999999999999988764

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.97  E-value=8.2e-30  Score=242.28  Aligned_cols=333  Identities=13%  Similarity=0.072  Sum_probs=252.4

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      .+.+++|.|+.+.+++.+...++..+ .|+.|+++||     +|||+.++.+.++..++.+++.+.+    +++.+++.|
T Consensus        27 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~   97 (485)
T TIGR00711        27 TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-----FGTRRLFLISTFAFTLGSLLCGVAP----NLELMIIFR   97 (485)
T ss_pred             HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-----hCcHHHHHHHHHHHHHHHHHHhCcC----CHHHHHHHH
Confidence            45688999999999999999987777 8999999999     9999999999999999999999888    999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVL  164 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~  164 (408)
                      +++|++.+...+...+++.|+.|++         +|++++++......+|..+||.+++++.++.+||+.|++.+.+.++
T Consensus        98 ~~~G~~~~~~~~~~~~~i~~~~~~~---------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~  168 (485)
T TIGR00711        98 VIQGFGGGPLIPLSFSTLLNIYPPE---------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGII  168 (485)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHH
Confidence            9999999999999999999999875         3999999999999999999999999999999999999998877776


Q ss_pred             HHHHhh-hcccccccCCCCCcc----------------------hh---HHHH---------------HHH--------H
Q 015348          165 QFFITI-AVRESALKLPKSQSN----------------------VG---IRAQ---------------LSE--------L  195 (408)
Q Consensus       165 ~~~~~~-~~~e~~~~~~~~~~~----------------------~~---~~~~---------------~~~--------~  195 (408)
                      ..+... ..||+++++.++.+.                      .+   .++.               .++        .
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (485)
T TIGR00711       169 VVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVD  248 (485)
T ss_pred             HHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence            655443 366544322111000                      00   0000               000        1


Q ss_pred             HHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHH
Q 015348          196 SAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQ  275 (408)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  275 (408)
                      .+.+|+|.++...+..++............+.|.++..|+++.+.+.......++.+++.++.+++.||+++|+.+..+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~  328 (485)
T TIGR00711       249 LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGL  328 (485)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence            23467777776665555534433334445566777778999999999999999999999999999999999998877776


Q ss_pred             HHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhh-hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Q 015348          276 AMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKIL-PFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSG  354 (408)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~  354 (408)
                      ....+.......   .    .......+......+..+++.+... |......+..|++++|++.|+.+...++|+.+|+
T Consensus       329 ~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~  401 (485)
T TIGR00711       329 ILYAVGFYWRAF---T----FTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGT  401 (485)
T ss_pred             HHHHHHHHHHhc---c----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence            655554433211   0    0011111123333455556554444 4466777889999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 015348          355 YLGVALASY  363 (408)
Q Consensus       355 ~~~g~l~~~  363 (408)
                      .+.|.+.+.
T Consensus       402 ~i~g~~~~~  410 (485)
T TIGR00711       402 ALITTILTN  410 (485)
T ss_pred             HHHHHHHHH
Confidence            999988874

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09952 shikimate transporter; Provisional

Probab=99.97  E-value=7.5e-29  Score=231.44  Aligned_cols=334  Identities=14%  Similarity=0.127  Sum_probs=217.7

Q ss_pred             hhhhcc--CCCHHHHHHHHHh-----hcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchH
Q 015348            6 FLKDSL--NVDPSTLQLLQNS-----ANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISI   77 (408)
Q Consensus         6 ~l~~~l--~~s~~~~g~~~~~-----~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~   77 (408)
                      ++.+++  +.++. .+++.+.     ..+...+ +++.|+++||     +|||+.+..+.++.+++.+++++++    ++
T Consensus        48 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-----~Grr~~l~~~~~~~~~~~~~~~~~~----~~  117 (438)
T PRK09952         48 VFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR-----LGRKRMLMLTVWMMGIATALIGLLP----SF  117 (438)
T ss_pred             HHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHHHhcCC----cH
Confidence            344555  67776 4555332     2233334 6778999999     9999999999999999999999998    76


Q ss_pred             H--------HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh--
Q 015348           78 F--------TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID--  147 (408)
Q Consensus        78 ~--------~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~--  147 (408)
                      +        .+++.|+++|++.+...+...+++.|+.|+++         |++..+....+..+|.+++..+...+..  
T Consensus       118 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~---------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~  188 (438)
T PRK09952        118 STIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK---------KAFYSSGVQVGYGVGLLLSTGLVSLISMMT  188 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5        58889999999999999888899999999764         8999998888888888888777666542  


Q ss_pred             ------cCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHH-HHhhhccccc
Q 015348          148 ------RFSPPSMFLFFGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAW-FAASYSIIPV  220 (408)
Q Consensus       148 ------~~g~~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  220 (408)
                            .+|||.+|++.++..++........||+++..++++++++.++.........++|+.+..... .+........
T Consensus       189 ~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  268 (438)
T PRK09952        189 TDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYI  268 (438)
T ss_pred             CHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHH
Confidence                  579999999887765554333334666653211110100000011111123556665554432 2221222222


Q ss_pred             ccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCc
Q 015348          221 LTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPD  300 (408)
Q Consensus       221 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (408)
                      ...+.+.|..+.+|++...........++..+++.++.|++.||+++|+.+..+.++..+....... ..      ...+
T Consensus       269 ~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~-~~------~~~~  341 (438)
T PRK09952        269 VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFM-AL------EAQS  341 (438)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-HH------HcCC
Confidence            3344555666678888876655555667777888899999999999998877665544333222111 00      0011


Q ss_pred             eEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Q 015348          301 SLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVA-LAFIVSGYLGVALASYTG  365 (408)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~-lg~~ig~~~~g~l~~~~g  365 (408)
                      .........+..+++.....+. +++..|..|++.|++..|+.+...+ +++.++|.+.|++.+..+
T Consensus       342 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~  408 (438)
T PRK09952        342 IFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG  408 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            1112222223333443333444 7889999999999999999766654 899999999999988653

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=1.3e-28  Score=229.77  Aligned_cols=333  Identities=14%  Similarity=0.118  Sum_probs=218.1

Q ss_pred             hhhhhcc---CCCHHHHHHHHHhhc---ccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC----
Q 015348            5 FFLKDSL---NVDPSTLQLLQNSAN---LPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS----   73 (408)
Q Consensus         5 ~~l~~~l---~~s~~~~g~~~~~~~---~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~----   73 (408)
                      .++.+++   +.++.+.+...+...   +...+ ++++|+++||     +|||+.+..+..+.+++.+++++.+..    
T Consensus        46 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-----~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (432)
T PRK10406         46 LYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-----HGRKKSMLISVCMMCFGSLVIACLPGYETIG  120 (432)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHHHHHHhhcCCchhHH
Confidence            3566777   456665544444444   33335 7899999999     999999999999999999999888711    


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh-------
Q 015348           74 SISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAI-------  146 (408)
Q Consensus        74 ~~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~-------  146 (408)
                      ..++..+++.|+++|++.+...+...+++.|+.|+++         |++..+..+.+...|.++++.+...+.       
T Consensus       121 ~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~---------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  191 (432)
T PRK10406        121 TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR---------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAE  191 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            0123468899999999999999999999999999764         999999888888888888877665543       


Q ss_pred             -hcCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhh-hcccccccce
Q 015348          147 -DRFSPPSMFLFFGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAAS-YSIIPVLTGT  224 (408)
Q Consensus       147 -~~~g~~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  224 (408)
                       +.+|||.+|++.+++.++.......+||+++.+.++.   +.+   ++.++.+|+|..+...+...+. .........+
T Consensus       192 ~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~---~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (432)
T PRK10406        192 LREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRAL---KEA---GSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTY  265 (432)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhh---ccc---ccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2579999999988777665444444666543321110   011   1233446777766554433321 2223334456


Q ss_pred             eEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEee
Q 015348          225 MFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYV  304 (408)
Q Consensus       225 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (408)
                      .|.|..+..|++..+.+.......+...++..+.|++.||+++|+.+.....+..+..........      ...+.. .
T Consensus       266 lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~  338 (432)
T PRK10406        266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ------NVSSPY-A  338 (432)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH------cCCcHH-H
Confidence            666776778999888888888877788888889999999999998776554433322221111000      000111 1


Q ss_pred             hhhhHHHHHHHHHhhhh-HHHHHHHhcCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q 015348          305 LIFSSLLEVMFFFKILP-FSVYIAQVCPPGCEGSIMAFVMSAVAL-AFIVSGYLGVALASYTG  365 (408)
Q Consensus       305 ~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~ig~~~~g~l~~~~g  365 (408)
                      ................+ ...+.+|..|++.|++..|+.+...+. .+...|.+.+.+ +..|
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g  400 (432)
T PRK10406        339 AFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIG  400 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhC
Confidence            11111111111112223 367889999999999999999888765 344577777755 4444

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.97  E-value=5e-29  Score=237.41  Aligned_cols=335  Identities=13%  Similarity=0.105  Sum_probs=232.2

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      ..+.+++|.|+.+.+++.+...++..+ .++.|+++||     +|||+.+..+.+..+++.+++.+.+    +++.+++.
T Consensus        44 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~  114 (496)
T PRK03893         44 TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-----YGRRLAMVISIVLFSVGTLACGFAP----GYWTLFIA  114 (496)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHH
Confidence            346689999999999999999987777 8999999999     9999999999999999999999988    99999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVV  163 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~  163 (408)
                      |++.|++.+...+...+++.|..|+++         |++.++......++|..+++.+++.+.+..+||+.|++..+..+
T Consensus       115 ~~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~  185 (496)
T PRK03893        115 RLVIGMGMAGEYGSSATYVIESWPKHL---------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPII  185 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            999999999999988899999998753         89999999999999999999999999999999999987554444


Q ss_pred             HHHHHhhhcccccccCCCCCcchhHHHHHHHHH-------H-------------hcc-----------------------
Q 015348          164 LQFFITIAVRESALKLPKSQSNVGIRAQLSELS-------A-------------ALR-----------------------  200 (408)
Q Consensus       164 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-------~-------------~~~-----------------------  200 (408)
                      +..+....+||+++.+++++++.+.++..+...       .             .+.                       
T Consensus       186 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (496)
T PRK03893        186 FALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISF  265 (496)
T ss_pred             HHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Confidence            333333345665332111111100000000000       0             000                       


Q ss_pred             -------c-chhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehH
Q 015348          201 -------K-PEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLIS  272 (408)
Q Consensus       201 -------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  272 (408)
                             + +.........+.............+.|.++++|++..+.+.+.....++.+++.++.+++.||+++|+.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~  345 (496)
T PRK03893        266 MVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYV  345 (496)
T ss_pred             HHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence                   0 00000000000000011112234456666678999999999999999999999999999999999998877


Q ss_pred             HHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 015348          273 AIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFI  351 (408)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~  351 (408)
                      .+..+..+..+....        . .....+.........+.......+. ..++++..|++++|+.+|+.++..++|..
T Consensus       346 ~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~  416 (496)
T PRK03893        346 CSLLISQLLIIPVFA--------I-GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGA  416 (496)
T ss_pred             HHHHHHHHHHHHHhh--------c-cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHH
Confidence            665544433322111        0 0011111111112111112122233 66788999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 015348          352 VSGYLGVALASYTGV  366 (408)
Q Consensus       352 ig~~~~g~l~~~~g~  366 (408)
                      +||.++|.+.|..|+
T Consensus       417 lgp~l~g~l~~~~g~  431 (496)
T PRK03893        417 LAPILGALIAQRLDL  431 (496)
T ss_pred             HHHHHHHHHhccCCh
Confidence            999999999998775

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=4.9e-28  Score=223.72  Aligned_cols=324  Identities=16%  Similarity=0.118  Sum_probs=232.7

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      ++.+++|.|+.+.+++.+...++..+ ++++|+++||     +|||+.+..+.....++.+.+.+.+    +++.+++.|
T Consensus        33 ~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-----~grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~  103 (394)
T PRK11652         33 DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-----VGRRPVILVGMSIFILGTLVALFAH----SLTVLIAAS  103 (394)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-----cCChHHHHHHHHHHHHHHHHHHHHc----cHHHHHHHH
Confidence            45689999999999999999988887 9999999999     9999999999999999988888888    899999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVL  164 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~  164 (408)
                      ++.|++.+...+....+..|..+++         ++++.++..+.+..++..++|.+++.+.+..|||+.|++.++..++
T Consensus       104 ~~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~  174 (394)
T PRK11652        104 AIQGLGTGVGGVMARTLPRDLYEGT---------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAG  174 (394)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            9999999988888878888877764         3888899999999999999999999999989999999998777665


Q ss_pred             HHHH-hhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHH
Q 015348          165 QFFI-TIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGIS  243 (408)
Q Consensus       165 ~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  243 (408)
                      ..+. .++.||+++++++   +++   ..+..++.+++|.++...+..+.............+.+..+.+|.++.+.++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  248 (394)
T PRK11652        175 VTFSMARWMPETRPADAR---RTR---VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSIL  248 (394)
T ss_pred             HHHHHHHhCCccCccccc---hhH---HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHH
Confidence            5443 3457776443222   111   23344455788887765554433222222223333445556689999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-
Q 015348          244 KVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-  322 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  322 (408)
                      .....++.+++..+.+++.||.+++...  ..............  ...   .. ....+.........+.+.....|. 
T Consensus       249 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~--~~~---~~-~~~~~~~~~~~~~~~~g~~~~~~~~  320 (394)
T PRK11652        249 FILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWI--PGW---FG-VMNVWTLLVPAALFFFGAGMLFPLA  320 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHH---hc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999998732222  21111111111110  000   00 011122333344455555555566 


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          323 SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALAS  362 (408)
Q Consensus       323 ~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~  362 (408)
                      .+...+..| +++|+..++.+...++|..+++.+++.+.+
T Consensus       321 ~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        321 TSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            777778777 578999999999999999999988887654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.97  E-value=2.9e-28  Score=223.94  Aligned_cols=317  Identities=11%  Similarity=0.064  Sum_probs=224.0

Q ss_pred             hhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 015348            7 LKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLL   85 (408)
Q Consensus         7 l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (408)
                      +.+++|.|+.++|++.+...+...+ +++.|+++||     +|||+.+..+..+..++...+.+.+    +++.+++.|+
T Consensus        32 ~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-----~g~k~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~  102 (381)
T PRK03633         32 WLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-----IGFNRSYYLASLIFAAGCAGLGLMV----GFWSWLAWRF  102 (381)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHH
Confidence            3468999999999999999988777 9999999999     9999999999999999999888888    9999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q 015348           86 LSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQ  165 (408)
Q Consensus        86 l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~  165 (408)
                      +.|++.+...+...+.+.+..+++         +|++.++..+...++|..+||.+++.+.+...+... +..+......
T Consensus       103 l~G~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~-~~~~~~~~~~  172 (381)
T PRK03633        103 VAGIGCAMIWVVVESALMCSGTSR---------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLP-WVTGLVLAAI  172 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH-HHHHHHHHHH
Confidence            999999998888777777777654         489999999999999999999999988765433333 2222222221


Q ss_pred             HHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHH
Q 015348          166 FFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKV  245 (408)
Q Consensus       166 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  245 (408)
                      .. ..+.+.+++++++ +++       ++.++.+++|.++......+.............+.|.. +.|.++.+.+....
T Consensus       173 ~~-~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~g~s~~~~g~~~~  242 (381)
T PRK03633        173 LP-LLFTRILNQQAEN-HDS-------TSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLN-HQGMSDASIGFWMA  242 (381)
T ss_pred             HH-HHHhcccCCCCCC-CCC-------CCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence            11 1222222211111 111       11223366776665433222212112222233444443 46889989998888


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HH
Q 015348          246 FGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SV  324 (408)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  324 (408)
                      ...++.+++....+++.||+++|+.+..+.....+......            ...  .........+.+.....|. .+
T Consensus       243 ~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~------------~~~--~~~~~~~l~g~~~~~~~p~~~~  308 (381)
T PRK03633        243 LLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML------------SQA--AMAPALFILGAAGFTLYPVAMA  308 (381)
T ss_pred             HHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh------------hhH--HHHHHHHHHHHHHHhHHHHHHH
Confidence            88899999999999999999999887766555554332211            000  1112223334444445566 77


Q ss_pred             HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          325 YIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       325 ~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ...|..|+++++...+..+...++|..+||.++|++.|+.|.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~  350 (381)
T PRK03633        309 WACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD  350 (381)
T ss_pred             HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            788999988888888888888999999999999999998764

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.97  E-value=3.1e-29  Score=234.91  Aligned_cols=328  Identities=9%  Similarity=0.012  Sum_probs=233.2

Q ss_pred             hhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH-HH
Q 015348            7 LKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL-FL   84 (408)
Q Consensus         7 l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   84 (408)
                      +++++|.|+++.+++.+...+...+ .|++|+++||     +|||+.++.+.++..++.+.+++.+    +++.++. .|
T Consensus        45 i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~~~  115 (455)
T TIGR00892        45 LQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-----FGCRPVVIAGGLLASLGMILASFSS----NVIELYLTAG  115 (455)
T ss_pred             HHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-----cCchHHHHhhHHHHHHHHHHHHHhh----hHHHHHHHHH
Confidence            4589999999999999988855444 8999999999     9999999999999999998888888    8887765 56


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVL  164 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~  164 (408)
                      ++.|++.+...+...+++.++.+ +         +|+++.++.+.+..+|..++|.+++.+.+.+|||+.|++.+++.++
T Consensus       116 ~l~G~~~~~~~~~~~~~~~~~~~-~---------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~  185 (455)
T TIGR00892       116 FITGLGLAFNFQPSLTMLGKYFY-R---------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLH  185 (455)
T ss_pred             HHHHhcchhhhhHHHHHHHHHHH-h---------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            89999998765666678888875 2         4999999999999999999999999999999999999999888776


Q ss_pred             HHHHhhhc-cccccc---CC---C--C-C-cch-----hHHHHHHHH--HHhcccchhHHHHHHHHhhhcccccccceeE
Q 015348          165 QFFITIAV-RESALK---LP---K--S-Q-SNV-----GIRAQLSEL--SAALRKPEIMYSVAWFAASYSIIPVLTGTMF  226 (408)
Q Consensus       165 ~~~~~~~~-~e~~~~---~~---~--~-~-~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (408)
                      ..+..+++ ++++.+   +.   +  + + ..+     ...+..++.  .+.+++|.++......++............+
T Consensus       186 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  265 (455)
T TIGR00892       186 CCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLV  265 (455)
T ss_pred             HHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHH
Confidence            65444433 221110   00   0  0 0 000     001111111  2467888888776655553443333344445


Q ss_pred             EEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC--CCceehHHHH--HHHHHHHHHhHhhhcccccccCcCceE
Q 015348          227 FYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSV--SPRKLISAIQ--AMMAVFMISDVLFVKGVYREMGVPDSL  302 (408)
Q Consensus       227 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (408)
                      .|.. +.|++..+.+...++.+++.+++.++.+++.||.  ++++......  +..+...+...           .....
T Consensus       266 ~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~-----------~~~~~  333 (455)
T TIGR00892       266 PYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA-----------LAGDY  333 (455)
T ss_pred             HHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH-----------HhchH
Confidence            5544 4799999999999999999999999999999974  2333222221  21111111110           11122


Q ss_pred             eehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          303 YVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      +.+....+..+++.....+. .+++.+..|++++++.+|++++..++|+.+||.++|.+.|..|
T Consensus       334 ~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  397 (455)
T TIGR00892       334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK  397 (455)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence            23344455556665555555 7888999999999999999999999999999999999998875

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.96  E-value=3.7e-28  Score=223.25  Aligned_cols=324  Identities=18%  Similarity=0.070  Sum_probs=225.3

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcch----hHHHHHHHHHHHHHHHHHHhccCcchHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRV----PYIAIGAFLQAVSWLAIAILSQSSISIF   78 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk----~~l~~~~~~~~~~~~~~~~~~~~~~~~~   78 (408)
                      +.|+ +|+|.|+.++|++.++..+...+ +|++|+++||     +|||    +.+.+.....  ........+    ++|
T Consensus        28 ~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-----~g~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~   95 (382)
T PRK11128         28 SVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-----PSQLIPALRLLALLTLLF--AVAFWFGAH----SFW   95 (382)
T ss_pred             HHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-----hcchHHHHHHHHHHHHHH--HHHHHHhcc----cHH
Confidence            4566 67899999999999999987776 9999999999     8873    3333222221  222223334    899


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHH
Q 015348           79 TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFF  158 (408)
Q Consensus        79 ~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~  158 (408)
                      .+++.|++.|++.+...+..+++..++.+           +|++.++......++|..+||.+++++.+++|||..|++.
T Consensus        96 ~l~i~~~l~g~~~~~~~~~~~a~~~~~~~-----------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~  164 (382)
T PRK11128         96 LLFVAIGLFNLFFSPLVPLTDALANTWQK-----------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWIL  164 (382)
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHh-----------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            99999999999988888888888777632           2556666677788999999999999999999999999988


Q ss_pred             HHHHHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChh
Q 015348          159 GLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSS  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  238 (408)
                      +...++..+..++.||++++++++++   .++..++.++.+|+|.++...+..++............+.|. ++.|.++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~g~s~~  240 (382)
T PRK11128        165 TAGVASMLLGQLLRPTIMPQGESRQQ---ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW-QAAGYSAS  240 (382)
T ss_pred             HHHHHHHHHHHHccCCCCCccccccc---cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH-HHCCCCHh
Confidence            76555444444445554322211111   111123445668999988877655553333333333334444 45899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHh
Q 015348          239 VLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFK  318 (408)
Q Consensus       239 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
                      +.|.+.....++.++..++.+++.||+++|+.+..+.+..++..+...           ..++.+......+..+++...
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~g~~~~~  309 (382)
T PRK11128        241 TIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG-----------STTALPWLIVIQILHCGTFTV  309 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-----------hhhhHHHHHHHHHHHHHHHHH
Confidence            999998888899999999999999999999988777666555433311           112333444455656666554


Q ss_pred             hhhH-HHHHHHhcCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC
Q 015348          319 ILPF-SVYIAQVCPPGCEGSIMAFVMSA-VALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       319 ~~~~-~~~~~~~~p~~~~g~~~g~~~~~-~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ..+. ..+..+. +++++++.++..+.. ..+|..+||.++|.+.|..|.
T Consensus       310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~  358 (382)
T PRK11128        310 CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA  358 (382)
T ss_pred             HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            5555 6666675 566678999988744 567779999999999998863

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.96  E-value=4.3e-28  Score=230.07  Aligned_cols=331  Identities=17%  Similarity=0.107  Sum_probs=221.9

Q ss_pred             ccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhc--------cCcchHHHH
Q 015348           10 SLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILS--------QSSISIFTM   80 (408)
Q Consensus        10 ~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~   80 (408)
                      +++.++.+.+++.+...++..+ ++++|+++||     +|||+.++.+.++..++.+.+++..        .....++.+
T Consensus        49 ~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-----~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l  123 (479)
T PRK10077         49 SESAANSLLGFCVASALIGCIIGGALGGYCSNR-----FGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEF  123 (479)
T ss_pred             cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHH
Confidence            4489999999999999988877 9999999999     9999999999999888887776531        011246778


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh--------hcCChh
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAI--------DRFSPP  152 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~--------~~~g~~  152 (408)
                      ++.|+++|++.+...+...+++.|+.|++         +|++..+..+.+..+|.++++.+++.+.        +..|||
T Consensus       124 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~---------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr  194 (479)
T PRK10077        124 VIYRIIGGIGVGLASMLSPMYIAEIAPAH---------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWR  194 (479)
T ss_pred             HHHHHHHhhhHhHHhhHHHHHHHhhCChh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChH
Confidence            89999999999999999999999999975         4999999999999999999988776553        357999


Q ss_pred             hHHHHHHHHHHHHHHHhhhcccccccCCCCCcc-------------hhHHHHHHHHHHhccc-----chhHHH----HHH
Q 015348          153 SMFLFFGLLVVLQFFITIAVRESALKLPKSQSN-------------VGIRAQLSELSAALRK-----PEIMYS----VAW  210 (408)
Q Consensus       153 ~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-----~~~~~~----~~~  210 (408)
                      +.|++.++..++..+..+++||+++...+++++             ++.++..++.++..++     +..+..    ...
T Consensus       195 ~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (479)
T PRK10077        195 YMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVI  274 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHH
Confidence            999998887777766666788876431110000             0011111222222211     111111    000


Q ss_pred             HHhhhcccccc----cceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhH
Q 015348          211 FAASYSIIPVL----TGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDV  286 (408)
Q Consensus       211 ~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  286 (408)
                      ...........    .....++..+..|.+....++.....++..+++.++.+++.||+++|+.+..+.++.++......
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~  354 (479)
T PRK10077        275 GVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG  354 (479)
T ss_pred             HHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHH
Confidence            00000000000    00111122244677777677777778888899999999999999999988888777666544322


Q ss_pred             hhhcccccccCcCceEeehhhhHHHHHHHH-HhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          287 LFVKGVYREMGVPDSLYVLIFSSLLEVMFF-FKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALA  361 (408)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~  361 (408)
                      ....  .     ..............+.+. ..+.|. ..+++|..|+++|+++.|+.+...+++..+++.+.+.+.
T Consensus       355 ~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        355 TAFY--T-----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             HHHh--c-----CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            1100  0     011111112222222222 223466 789999999999999999999999999999987776555

>PRK11043 putative transporter; Provisional

Probab=99.96  E-value=7e-28  Score=223.21  Aligned_cols=323  Identities=18%  Similarity=0.152  Sum_probs=234.0

Q ss_pred             hhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 015348            7 LKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLL   85 (408)
Q Consensus         7 l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (408)
                      +++++|.|+++.+++.++..++..+ ++++|+++||     +|||+.+..+..+..++.+.+.+.+    +++.+++.|+
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~  102 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-----YGRKPVLLAGLSLFALGSLGMLWVE----SAAQLLVLRF  102 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-----cCCcHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHH
Confidence            5689999999999999999988777 9999999999     9999999999999999988888888    9999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q 015348           86 LSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQ  165 (408)
Q Consensus        86 l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~  165 (408)
                      +.|++.+...+...+++.|..++++         +++..+.......+|..++|.+++.+.+..|||+.|++.++..++.
T Consensus       103 l~G~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~  173 (401)
T PRK11043        103 VQAVGVCSAAVIWQALVIDRYPAQK---------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLL  173 (401)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            9999988888888888999888653         7777888888889999999999999999999999999988887777


Q ss_pred             HHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHH
Q 015348          166 FFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKV  245 (408)
Q Consensus       166 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  245 (408)
                      .+..++++|+++++++    ++.+   ++.++.+|+|..+...+................+++. ++.|+++.+.|+...
T Consensus       174 ~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~  245 (401)
T PRK11043        174 ILPTLRLKPSKKARKQ----SQDA---LTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFIL-EQMGYSPADIGLSYV  245 (401)
T ss_pred             HHHHHHcCCCCCcccc----chHH---HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHH-HHcCCCHHHHHHHHH
Confidence            6665556654432211    1112   2344557788766544433322222222223344443 457999999998888


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HH
Q 015348          246 FGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SV  324 (408)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  324 (408)
                      ...++.+++....+++.||+++|+..........+..........     . .....+.........+.+.+...|. .+
T Consensus       246 ~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (401)
T PRK11043        246 PQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASL-----L-SHPSLVPLLIPFCVMAAANGAIYPIVVA  319 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-----h-ccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999888665554444333222111100     0 0111112222233344444555565 55


Q ss_pred             HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          325 YIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALAS  362 (408)
Q Consensus       325 ~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~  362 (408)
                      ...+..| +++|++.|+.++....+...++.+.|.+.+
T Consensus       320 ~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        320 QALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            5556665 679999999999988888999988888876

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.96  E-value=4.2e-29  Score=232.59  Aligned_cols=338  Identities=14%  Similarity=0.105  Sum_probs=214.5

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHH--H
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIF--T   79 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~   79 (408)
                      ++.|+++++|+|+.++|++.+...+...+ +|++|+++||     +|||+.++++.....+..........  ....  .
T Consensus        33 ~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-----~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  105 (420)
T PRK09528         33 FPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-----LGLKKHLLWIISGLLVLFGPFFIYVF--APLLQYN  105 (420)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            45688889999999999999999988777 9999999999     99999988766555444332211100  0111  1


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 015348           80 MSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFG  159 (408)
Q Consensus        80 ~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~  159 (408)
                      ......+.++..+.........+.++.++.+  +     ++++.++......++|..++|.+++.+.+ .+|+..|++.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~  177 (420)
T PRK09528        106 ILLGAIVGGIYLGFGFLAGAGAIEAYIERVS--R-----RSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGS  177 (420)
T ss_pred             HHHHHHHHHHHhhhhhccchhhhhhHHHHHH--h-----hccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHH
Confidence            1122223333333332222233333333222  1     46767777777899999999999999876 48999999988


Q ss_pred             HHHHHHHHHhhhcc-cccccCC--CCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEec---c
Q 015348          160 LLVVLQFFITIAVR-ESALKLP--KSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQN---L  233 (408)
Q Consensus       160 ~~~~~~~~~~~~~~-e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  233 (408)
                      +..++..+..++.+ |+++++.  +++++++.+...++.++.+|||.++...+..+.............+.|..+.   .
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (420)
T PRK09528        178 GSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATP  257 (420)
T ss_pred             HHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88777666655543 3322211  1011111122345556678898876655443332222222222233333322   2


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHH
Q 015348          234 KIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEV  313 (408)
Q Consensus       234 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
                      +.+..+.|.......++..++.++.+++.||+++|+.+..+..+..+...+..           ..++.+.+.......+
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~-----------~~~~~~~~~~~~~l~g  326 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG-----------FATGPLEVSILKLLHA  326 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH-----------hcccHHHHHHHHHHHH
Confidence            55667888988888899999999999999999999988777666555433321           1122223333344444


Q ss_pred             HHHHhhhhH-HHHHHHhcCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          314 MFFFKILPF-SVYIAQVCPPGCEGSIMAF-VMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       314 ~~~~~~~~~-~~~~~~~~p~~~~g~~~g~-~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .......+. ..++.+..|++.+++.++. ++...++|..+++.+.|++.|..|+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~  381 (420)
T PRK09528        327 FEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGF  381 (420)
T ss_pred             HHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            444433333 6788899999999988766 6777889999999999999998874

>TIGR00898 2A0119 cation transport protein

Probab=99.96  E-value=4.3e-28  Score=231.41  Aligned_cols=352  Identities=16%  Similarity=0.120  Sum_probs=242.1

Q ss_pred             hhhccCCC---HHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            7 LKDSLNVD---PSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         7 l~~~l~~s---~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      +++|+|++   +.+.++..++..++..+ ++++|+++||     +|||++++++.++..++.++.++++    +++.+++
T Consensus       115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-----~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~~~~  185 (505)
T TIGR00898       115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-----FGRKKVLLLSTLVTAVSGVLTAFSP----NYTVFLV  185 (505)
T ss_pred             EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-----ccchHHHHHHHHHHHHHHHHHHHcc----cHHHHHH
Confidence            56789998   99999999999988888 8999999999     9999999999999999999999988    9999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLV  162 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~  162 (408)
                      .|++.|++.+...+...+++.|+.|+++         |++..+....+..+|.++++.++..+.+   ||+.+++.+++.
T Consensus       186 ~r~l~G~~~~~~~~~~~~~~~e~~~~~~---------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~  253 (505)
T TIGR00898       186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQ---------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPT  253 (505)
T ss_pred             HHHHHHhhccchHHHHHHHhheecChhh---------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHH
Confidence            9999999999999999999999998764         8999999999999999999988876643   999999999888


Q ss_pred             HHHHHHhhhcccccccCCCCCcc-------------------hh------HHH---H--HHHHHHhcccchhHHHHHHHH
Q 015348          163 VLQFFITIAVRESALKLPKSQSN-------------------VG------IRA---Q--LSELSAALRKPEIMYSVAWFA  212 (408)
Q Consensus       163 ~~~~~~~~~~~e~~~~~~~~~~~-------------------~~------~~~---~--~~~~~~~~~~~~~~~~~~~~~  212 (408)
                      ++..+..+++||+++....+++.                   .+      .++   .  ....++.+++|.++...+...
T Consensus       254 ~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  333 (505)
T TIGR00898       254 FLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLM  333 (505)
T ss_pred             HHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHH
Confidence            87777677788875421100000                   00      000   0  013345677777766655444


Q ss_pred             hhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhccc
Q 015348          213 ASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGV  292 (408)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (408)
                      +.+............ ..+.++.+..   ......++..+++.++.+++.||+|+|+.+..+.++.++..+....     
T Consensus       334 ~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~-----  404 (505)
T TIGR00898       334 MLWFTTAFSYYGLVL-DLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF-----  404 (505)
T ss_pred             HHHHHHHHHHHHHhc-cccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-----
Confidence            323222111111111 2233444433   3334456777888889999999999999888877666665444222     


Q ss_pred             ccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 015348          293 YREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDF  371 (408)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~  371 (408)
                         .. ....+......+..+++.....+. +.+..|..|++.|+++.|+.+....+|+.++|.+.+ +.+. +.     
T Consensus       405 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~-~~-----  473 (505)
T TIGR00898       405 ---VP-VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK-WL-----  473 (505)
T ss_pred             ---cC-CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-HH-----
Confidence               00 011112222222233333333344 788899999999999999999999999999999988 4432 21     


Q ss_pred             CchHHHHHHHHhhhhhhhhhhhccCCCCCCc
Q 015348          372 SGLPLALIIQAVCTILPLYWSYFMPDGVKSK  402 (408)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (408)
                         ...+.+.+.+.++.......+||+++++
T Consensus       474 ---~~~~~~~~~~~~~~~~~~~~lpet~~~~  501 (505)
T TIGR00898       474 ---FLPLVLFGGLALLAGILTLFLPETKGVP  501 (505)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHcCcCCCCCC
Confidence               1122223333333334445678766543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.96  E-value=2.8e-28  Score=231.37  Aligned_cols=339  Identities=14%  Similarity=0.064  Sum_probs=228.3

Q ss_pred             CCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHH
Q 015348           13 VDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGA   91 (408)
Q Consensus        13 ~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   91 (408)
                      .++.+.+++.+...++..+ ++++|+++||     +|||++++.+.++..++.+++.+... ..+++.+++.|++.|++.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-----~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~  141 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDR-----FGRKKSLLIIALLFVIGAILMGLAAF-ALSVEMLIVGRVLLGIGV  141 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhh-----hhhHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhh
Confidence            4489999999999988777 9999999999     99999999999999888888765441 125668999999999999


Q ss_pred             HHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHH---HHHhhcCChhhHHHHHHHHHHHHHHH
Q 015348           92 SIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLV---GFAIDRFSPPSMFLFFGLLVVLQFFI  168 (408)
Q Consensus        92 ~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~---~~l~~~~g~~~~f~i~~~~~~~~~~~  168 (408)
                      +...+...+++.|+.|+++         |++..++.+.+.++|..+++.++   +...+..+||+.|++.++..++..+.
T Consensus       142 ~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~  212 (481)
T TIGR00879       142 GIASALVPMYLSEIAPKAL---------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLG  212 (481)
T ss_pred             hHHHhHHHHHHHccCChhh---------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998764         99999999999999999999998   66667789999999977666666555


Q ss_pred             hhhcccccccC---CCCCc--------------chhHHH------------------HHHHHHHhccc---chhHHHHHH
Q 015348          169 TIAVRESALKL---PKSQS--------------NVGIRA------------------QLSELSAALRK---PEIMYSVAW  210 (408)
Q Consensus       169 ~~~~~e~~~~~---~~~~~--------------~~~~~~------------------~~~~~~~~~~~---~~~~~~~~~  210 (408)
                      .+++||++...   ++.++              +.+..+                  ..++.++..++   +.++...+.
T Consensus       213 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (481)
T TIGR00879       213 LFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQ  292 (481)
T ss_pred             HhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHH
Confidence            66677764310   00000              000000                  00111111111   111111111


Q ss_pred             HHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhc
Q 015348          211 FAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVK  290 (408)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (408)
                      .+. ............++..++.|++..+.+.......++.+++.++.+++.||+++|+.+..+..+..+..+.......
T Consensus       293 ~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (481)
T TIGR00879       293 WFQ-QFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGA  371 (481)
T ss_pred             HHH-HHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence            111 1111111122223344557888888888888889999999999999999999999887776655554333221000


Q ss_pred             ccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          291 GVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      ...................+..+.......+. ..+..|..|++.|++..|+.+...+++..++|.+.+.+.+..|..
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~  449 (481)
T TIGR00879       372 SFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVG  449 (481)
T ss_pred             cccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            00000000001111122222222223334455 677799999999999999999999999999999999999886643

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.96  E-value=1.1e-28  Score=229.95  Aligned_cols=347  Identities=18%  Similarity=0.264  Sum_probs=265.8

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhc-ccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHh-ccC---cchH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAIL-SQS---SISI   77 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~-~~~---~~~~   77 (408)
                      +.+|+++.+|+++..+|.+..+.. +..+.+|+.|.++||++.|+.+|||+++.+.+..+++..++... +..   ....
T Consensus        24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~  103 (428)
T PF13347_consen   24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL  103 (428)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence            467888999999999999999988 55666999999999999999899999999999999999888876 311   1234


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC-------C
Q 015348           78 FTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRF-------S  150 (408)
Q Consensus        78 ~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~-------g  150 (408)
                      .++.+..++..++..+.+.+..++.+|..++++        +|.+..++......+|..+...+.+.+.+..       +
T Consensus       104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--------~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~  175 (428)
T PF13347_consen  104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--------ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNG  175 (428)
T ss_pred             HHHHHHHHHHHHhhhhccCchhhcCccccccHh--------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchH
Confidence            456777788899999999999999999999876        5999999998888888877776766665432       5


Q ss_pred             hhhHHHHHHHHHHHHHHHhhh-cccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEE
Q 015348          151 PPSMFLFFGLLVVLQFFITIA-VRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQ  229 (408)
Q Consensus       151 ~~~~f~i~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (408)
                      |++...+.+++.++..+...+ .||++++.++++++.+.++..   ++.+|||+++......++.+..........++|.
T Consensus       176 ~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~---~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~  252 (428)
T PF13347_consen  176 YRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSL---RSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYF  252 (428)
T ss_pred             HHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccch---hhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            888888888888877666554 788333333333333344444   4458999998888888776666555566666777


Q ss_pred             EeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhH
Q 015348          230 TQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSS  309 (408)
Q Consensus       230 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
                      ++.+|.+ ...+.......++.+++.++.+++.||+|+|+.+..+..+.++..+...+.        +. .+.+......
T Consensus       253 ~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~i~~  322 (428)
T PF13347_consen  253 TYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL--------GP-GSPWLVLILF  322 (428)
T ss_pred             HHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH--------Hh-hhHHHHHHHH
Confidence            7767765 566777778889999999999999999999999998888877776654331        11 2233445555


Q ss_pred             HHHHHHHHhhhhH-HHHHHHhcC-------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 015348          310 LLEVMFFFKILPF-SVYIAQVCP-------PGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDD  370 (408)
Q Consensus       310 ~~~~~~~~~~~~~-~~~~~~~~p-------~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~  370 (408)
                      ...+++.+...+. .++.+|..+       ++++|..+|+.+...+++..+++.+.|.+.+..|++.+.
T Consensus       323 ~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~  391 (428)
T PF13347_consen  323 ILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANA  391 (428)
T ss_pred             HHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCc
Confidence            6666666555555 777777766       356799999999999999999999999999999987654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=6.4e-28  Score=225.57  Aligned_cols=338  Identities=13%  Similarity=0.084  Sum_probs=231.7

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      ++++ +|+|+++.+++.+...++..+ +++.|+++||     +|||+.+..+.++.+++.+++...+....+++.+.+.|
T Consensus        52 ~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  125 (438)
T TIGR00712        52 YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-----SNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLL  125 (438)
T ss_pred             HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-----cCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence            4544 599999999999999988777 9999999999     99999999998888888887766432123677788899


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh-cCChhhHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID-RFSPPSMFLFFGLLVV  163 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~-~~g~~~~f~i~~~~~~  163 (408)
                      ++.|++.+...+.....+.|+.|+++         |++++++.+...++|..+++.+.+...+ ..+||..|++.+++.+
T Consensus       126 ~l~g~~~g~~~~~~~~~i~~~~~~~~---------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~  196 (438)
T TIGR00712       126 FLNGWFQGMGWPPCGRTMVHWWSQSE---------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAI  196 (438)
T ss_pred             HHHHHHhhcchHHHHHHHHHhcCccc---------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999888888889999988754         9999999999999999999887765444 5789999999888877


Q ss_pred             HHHHH-hhhcccccccCC----C--CC-------cchhHHHHHHHH--HHhcccchhHHHHHHHHhhhcccccccceeEE
Q 015348          164 LQFFI-TIAVRESALKLP----K--SQ-------SNVGIRAQLSEL--SAALRKPEIMYSVAWFAASYSIIPVLTGTMFF  227 (408)
Q Consensus       164 ~~~~~-~~~~~e~~~~~~----~--~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (408)
                      +..+. .+++||+++++.    +  ++       ++++.+...++.  ...+|++.++...+..++.+........+.|.
T Consensus       197 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  276 (438)
T TIGR00712       197 IVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPT  276 (438)
T ss_pred             HHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            76544 444676543210    0  00       000000001111  23578888887766655544443444556677


Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      |.++..|+++.+.++......+..+++.++.+++.||+++++....+.............+.      .......+....
T Consensus       277 ~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  350 (438)
T TIGR00712       277 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW------MNPAGNPLVDMI  350 (438)
T ss_pred             HHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH------hcCCCchHHHHH
Confidence            77777899999999988888899999999999999999654332223222211111111000      000011111111


Q ss_pred             hHHHHHHHHHhhhhH---HHHHHHhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC
Q 015348          308 SSLLEVMFFFKILPF---SVYIAQVCPPGCEGSIMAFVMSAVALAF-IVSGYLGVALASYTGV  366 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~---~~~~~~~~p~~~~g~~~g~~~~~~~lg~-~ig~~~~g~l~~~~g~  366 (408)
                      ..+..+..  ...|.   .....|..|++.+|++.|+.+...++++ .++|.+.|.+.|+.|+
T Consensus       351 ~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~  411 (438)
T TIGR00712       351 CMIVIGFL--IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW  411 (438)
T ss_pred             HHHHHHHH--HccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccc
Confidence            11222222  12222   3456789999999999999999988875 6899999999998874

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=3.9e-28  Score=226.72  Aligned_cols=333  Identities=14%  Similarity=0.077  Sum_probs=217.4

Q ss_pred             hhhhhccCCCHHHHHHHH-Hhhc--ccc---cc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchH
Q 015348            5 FFLKDSLNVDPSTLQLLQ-NSAN--LPM---VG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISI   77 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~-~~~~--~~~---~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~   77 (408)
                      ..+++|++.++.+.+... +...  ..+   .+ +++.|+++||     +|||+.++.+..+..++.+++++++    ++
T Consensus        39 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-----~Grr~~l~~~~~~~~~~~~l~~~~~----~~  109 (434)
T PRK15075         39 TAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-----VGRRKGLIVTLSIMASGTLLIAFVP----GY  109 (434)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-----hchHHHHHHHHHHHHHHHHHHHhCC----cH
Confidence            356788999887765443 2222  222   23 6788999999     9999999999999999999999988    66


Q ss_pred             H--------HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh---
Q 015348           78 F--------TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAI---  146 (408)
Q Consensus        78 ~--------~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~---  146 (408)
                      +        .+++.|+++|++.+...+...+++.|+.|+++         |++.+++.....++|..+++.+++.+.   
T Consensus       110 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~---------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~  180 (434)
T PRK15075        110 ATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR---------KGFYTSWQSASQQVAVVFAALLGYLLNQWL  180 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5        46889999999999988888899999999764         999999999888888888888877763   


Q ss_pred             -----hcCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHH-HHhhhccccc
Q 015348          147 -----DRFSPPSMFLFFGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAW-FAASYSIIPV  220 (408)
Q Consensus       147 -----~~~g~~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  220 (408)
                           +.+|||++|++......+........||+++..+++ ++.+.++..++   ..+++..+..... .+........
T Consensus       181 ~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  256 (434)
T PRK15075        181 SPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-HRPSMREIFRS---LAANWRIVLAGMLMVAMTTVSFYL  256 (434)
T ss_pred             CHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh-hccccccHHHH---HHHhHHHHHHHHHHHHHHHHHHHH
Confidence                 468999999875443222211111233432110110 01111111222   2344443332222 2222222333


Q ss_pred             ccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCc
Q 015348          221 LTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPD  300 (408)
Q Consensus       221 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (408)
                      ...+.|.|.++..|++..+.++......++.+++.++.|++.||+++|+.+..+................      . ..
T Consensus       257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~-~~  329 (434)
T PRK15075        257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV------A-AP  329 (434)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH------c-CC
Confidence            4455666677778999988888888888999999999999999999998876654433222111110000      0 01


Q ss_pred             eEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCC
Q 015348          301 SLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVAL-AFIVSGYLGVALASYTGV  366 (408)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~ig~~~~g~l~~~~g~  366 (408)
                      ............+++.+...+. ..+..|..|++.|++..|+.+.+.+. ++.++|.+.|++.|+.|.
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD  397 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence            1111111122223333333343 67789999999999999997666654 578899999999999874

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.96  E-value=2.9e-28  Score=221.74  Aligned_cols=303  Identities=19%  Similarity=0.175  Sum_probs=246.4

Q ss_pred             hhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 015348            7 LKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLL   85 (408)
Q Consensus         7 l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (408)
                      +.+++|.++.+.+++.+...+...+ +|++|+++||     +|||+.+..+.+...++.+.+...+    +++.+++.|+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   95 (352)
T cd06174          25 LAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-----FGRRRVLLLGLLLFALGSLLLAFAS----SLWLLLVGRF   95 (352)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCchhhHHHHHHHHHHHHHHHHhc----cHHHHHHHHH
Confidence            3467899999999999999977666 9999999999     9999999999999999999998888    9999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q 015348           86 LSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQ  165 (408)
Q Consensus        86 l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~  165 (408)
                      +.|++.+...+..++++.|+.|+++         |++.++..+...++|..++|.+++.+.+..+||+.+++.++..++.
T Consensus        96 l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (352)
T cd06174          96 LLGLGGGALYPAAAALIAEWFPPKE---------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL  166 (352)
T ss_pred             HHHcccccccHhHHHHHHHhCCccc---------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999854         9999999999999999999999999999999999999998888777


Q ss_pred             HHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHH
Q 015348          166 FFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKV  245 (408)
Q Consensus       166 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  245 (408)
                      .+...+.+                            |.++...+..+.............+.+..+..|.+..+.+....
T Consensus       167 ~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (352)
T cd06174         167 ALLLLFLL----------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLS  218 (352)
T ss_pred             HHHHHHHH----------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            66655554                            23333444444433333344444555555556889999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCce-ehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-H
Q 015348          246 FGQAAMLLWGVIYNSGLKSVSPRK-LISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-S  323 (408)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  323 (408)
                      ...++..++.++.+++.||+++|+ .+..+.....+.......           ....+.........+++.....+. .
T Consensus       219 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~  287 (352)
T cd06174         219 LFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL-----------APSLALLLVALLLLGFGLGFAFPALL  287 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHhccchhHH
Confidence            999999999999999999999998 777776666655444221           111223444455566666656666 8


Q ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          324 VYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       324 ~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ++..|..|+++|++.+|+.+...+++..+++.+.|.+.|..+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~  330 (352)
T cd06174         288 TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY  330 (352)
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence            8999999999999999999999999999999999999986554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.96  E-value=1.7e-28  Score=231.47  Aligned_cols=332  Identities=12%  Similarity=0.056  Sum_probs=234.0

Q ss_pred             ccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Q 015348           10 SLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSN   88 (408)
Q Consensus        10 ~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g   88 (408)
                      |++.|+.+.|++.+.+.+++.+ +++.|+++||     +|||+.+..+.++..++.+++.+..  ..+++.+++.|+++|
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~~~G  142 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-----YVFKWSIGIGMFLSSVISIVIPWAA--GGGIALVVFCRVIQG  142 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-----hCcchhhHHHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHH
Confidence            7899999999999999988888 9999999999     9999999999988888887765442  115788999999999


Q ss_pred             HHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-CChhhHHHHHHHHHHHHHH
Q 015348           89 LGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR-FSPPSMFLFFGLLVVLQFF  167 (408)
Q Consensus        89 ~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~-~g~~~~f~i~~~~~~~~~~  167 (408)
                      ++.+...+....++.|+.|+++         |++++++...+.++|.++++.+++.+.+. .|||..|.+.++..++..+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~  213 (465)
T TIGR00894       143 LAQGSVSPATHKIIVKWAPPKE---------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSL  213 (465)
T ss_pred             HhcccchhhHHHHHHhcCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHH
Confidence            9999999999999999998764         99999999999999999999999999988 4999999999988877766


Q ss_pred             Hhhh-cccccccCCCCCcch--hHHH----------HHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccC
Q 015348          168 ITIA-VRESALKLPKSQSNV--GIRA----------QLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLK  234 (408)
Q Consensus       168 ~~~~-~~e~~~~~~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  234 (408)
                      .++. .+|+|+++++.++++  ..++          .....++.+++|.+|...+..+...........+.|.|+.+.+|
T Consensus       214 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g  293 (465)
T TIGR00894       214 LWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLR  293 (465)
T ss_pred             HHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            6555 455443222111100  0000          00124556888888888777666555555566677788888899


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHH---HHHHHHHHHH--HhHhhhcccccccCcCceEeehhhhH
Q 015348          235 IRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISA---IQAMMAVFMI--SDVLFVKGVYREMGVPDSLYVLIFSS  309 (408)
Q Consensus       235 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
                      ++..+.|+......++.+++..+.|++.||.++|+....   ..........  ....+...    . ............
T Consensus       294 ~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~  368 (465)
T TIGR00894       294 VSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP----Y-LSAAFYLTIIIL  368 (465)
T ss_pred             cChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH----H-cCCchHHHHHHH
Confidence            999999999999999999999999999998764432210   0011111100  00000000    0 011111112222


Q ss_pred             HHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          310 LLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       310 ~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                      ...+.......+. .....+..| +..|.+.|+.+...+++..++|.+.|.+.+.
T Consensus       369 ~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~  422 (465)
T TIGR00894       369 TLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQ  422 (465)
T ss_pred             HHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence            2222222222233 445556666 4899999999999999999999988887764

>TIGR00895 2A0115 benzoate transport

Probab=99.96  E-value=2.1e-28  Score=226.60  Aligned_cols=325  Identities=16%  Similarity=0.150  Sum_probs=230.5

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      ++.+++|.|+.+.+++.+...++..+ +++.|+++||     +|||+.+..+.++..++.+++.+.+    +++.+++.|
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-----~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  112 (398)
T TIGR00895        42 AISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-----IGRKRVLLWSILLFSVFTLLCALAT----NVTQLLILR  112 (398)
T ss_pred             HHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHH
Confidence            45688999999999999998877776 8999999999     9999999999999999988888888    899999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVL  164 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~  164 (408)
                      ++.|++.+...+...+++.|+.|++         +|++.+++......+|..+++.+++.+.+..||+..|++.++...+
T Consensus       113 ~~~g~~~~~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  183 (398)
T TIGR00895       113 FLAGLGLGGLMPNLNALVSEYAPKR---------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLL  183 (398)
T ss_pred             HHHhcccccchhhHHHHHHHHcCHH---------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHH
Confidence            9999999999999999999999875         4999999999999999999999999999999999999998766555


Q ss_pred             HHH-HhhhcccccccCCCC------------------------CcchhHHHHHHHHHH-hccc---chhHHHHHHHHhhh
Q 015348          165 QFF-ITIAVRESALKLPKS------------------------QSNVGIRAQLSELSA-ALRK---PEIMYSVAWFAASY  215 (408)
Q Consensus       165 ~~~-~~~~~~e~~~~~~~~------------------------~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~  215 (408)
                      ..+ ...++||+++...++                        +++++.++..++..+ .+++   +..+......++..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (398)
T TIGR00895       184 LLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLL  263 (398)
T ss_pred             HHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence            543 344566653211000                        000000011112122 1222   22222222222212


Q ss_pred             cccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccc
Q 015348          216 SIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYRE  295 (408)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (408)
                      ........+.+ ++.++.|.++.+.+.......++.+++.++.+++.||+++|+.. .......+.......   .    
T Consensus       264 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~----  334 (398)
T TIGR00895       264 VGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA-LLLLLGAVFAVLVGS---T----  334 (398)
T ss_pred             HHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHHH---H----
Confidence            22222223333 44556789999999999999999999999999999999988333 332222222222111   0    


Q ss_pred             cCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          296 MGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVAL  360 (408)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l  360 (408)
                        . ..........+..+++.....+. .+++.|..|+++||+++|+.++..++|..+||.++|.+
T Consensus       335 --~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       335 --L-FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             --h-hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence              0 11112233344455555545555 88999999999999999999999999999999999875

>TIGR00889 2A0110 nucleoside transporter

Probab=99.96  E-value=1.8e-27  Score=220.42  Aligned_cols=337  Identities=10%  Similarity=0.008  Sum_probs=224.6

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCC-cchhHHHHHHHHHHHHHHHHHHhccCcchHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQ-HRVPYIAIGAFLQAVSWLAIAILSQSSISIFTM   80 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~-grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (408)
                      ++.|+++++|+|++|+|++.+...+..++ ++++|.++||     + |||+++.++.+...++..+..+.+    +++.+
T Consensus        25 l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-----~g~~r~~~~~~~~~~~~~~~~~~~~~----~~~~~   95 (418)
T TIGR00889        25 LGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-----WLSAQKVYAVCHFAGALLLFFAAQVT----TPAGM   95 (418)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcccHHHHHHHHHHHHHHHHHHHHhc----CHHHH
Confidence            45678899999999999999999987777 9999999999     7 457788888888878877777777    89998


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGL  160 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~  160 (408)
                      ...|.+.+++.+...+..+++..+...+..++ ...+..|.|..+      ++|.++||.+++.+.....|+ +|++.++
T Consensus        96 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~-~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~  167 (418)
T TIGR00889        96 FPVLLANSLAYMPTIALTNSISYANLPQAGLD-VVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAG  167 (418)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhhcCCC-chhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHH
Confidence            99999999987777776666654443211000 000002444444      578999999998873322343 4666666


Q ss_pred             HHHHHHHHhhhcccccccCCCCCcchhHHHHH-HHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCC----
Q 015348          161 LVVLQFFITIAVRESALKLPKSQSNVGIRAQL-SELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKI----  235 (408)
Q Consensus       161 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----  235 (408)
                      ..++..+..+++||+++.+++++  .+.++.. .+..+.+|+|.++...+..++............+.+. ++.|.    
T Consensus       168 ~~~~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~  244 (418)
T TIGR00889       168 SSALLGVFALTLPDIPVAKSTAK--MSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFL-HEFGRNPEF  244 (418)
T ss_pred             HHHHHHHHHhcCCCCCCCccccc--cCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHH-HHhcccccc
Confidence            66666555556787653322211  1122211 1233568888877766665553332222222222222 22333    


Q ss_pred             ----ChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHH
Q 015348          236 ----RSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLL  311 (408)
Q Consensus       236 ----~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                          +.+..+.......+..+++.+..+++.||+++|+.+..+.+...+.......  .  .   ......+.+....+.
T Consensus       245 ~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~--~--~---~~~~~~~~l~l~~~l  317 (418)
T TIGR00889       245 ADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY--G--D---PEYFGYALLFLSMIV  317 (418)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--c--C---cchhhHHHHHHHHHH
Confidence                3466788889999999999999999999999999988887766655433211  0  0   000011123334455


Q ss_pred             HHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Q 015348          312 EVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVM-SAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       312 ~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~-~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .+++.....+. ..++.|..|++.|++++|+.+ ...++|..+||.++|.+.|+.|.
T Consensus       318 ~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~  374 (418)
T TIGR00889       318 YGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA  374 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            55555555555 778899999999999999997 56789999999999999998764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.96  E-value=1.4e-26  Score=213.62  Aligned_cols=342  Identities=13%  Similarity=0.045  Sum_probs=217.0

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccccchheeecccccccCCcchhHHHHHH-HHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGA-FLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      ++.|+ +|.|.|++++|++. ...+++..+++++++.||+..+++||||..++.. .+...+...............+..
T Consensus        24 lp~~l-~~~g~~~~~iGl~~-~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (390)
T TIGR02718        24 LPTLL-REDGAPLTALAFLP-LVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAV  101 (390)
T ss_pred             HHHHH-HHcCCCHHHHHHHH-HHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence            46677 56799999999983 3333444444444444443222277777654443 323322333332211111233445


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      ....+.++..+..++..|++..|..+++         +++...+....+..+|.++|+...+++.+..|||..|++.+..
T Consensus       102 ~~~~~~~~~~a~~d~~~d~~~~~~~~~~---------~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l  172 (390)
T TIGR02718       102 GLLACASLASATQDIATDGMAAEHFNGR---------TLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACV  172 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            5566677888889999988888876654         3777788777788899999998888999999999999999988


Q ss_pred             HHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHH
Q 015348          162 VVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLG  241 (408)
Q Consensus       162 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  241 (408)
                      .++..+..++++|++++++++ +    ++..++.++.+|+|.++......++............++|..| .|+++++.|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig  246 (390)
T TIGR02718       173 PLASLVCVLWLKDRAVASPEA-P----LARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIG  246 (390)
T ss_pred             HHHHHHHHHHcCCCCcCcccc-c----hhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHH
Confidence            877666655555443222111 1    1122345566899988777766655444333444445556654 799999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhh
Q 015348          242 ISKVFGQ-AAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKIL  320 (408)
Q Consensus       242 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (408)
                      ....... ...+++..+.|++.||+++|+.+..+....+...+........    +..+.. ..........++..+...
T Consensus       247 ~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~g~~~  321 (390)
T TIGR02718       247 RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAF----WLAPGI-AVAWSCSAFGSLITGITS  321 (390)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc----ccCCcH-HHHHHHHHHHHHHHHHHH
Confidence            9877765 4667788999999999999988877665543322221110000    001111 111122222222233333


Q ss_pred             hH-HHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          321 PF-SVYIAQVCPP-GCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       321 ~~-~~~~~~~~p~-~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      +. .+...+.+++ +.+|+.+++.++..++|..++|.++|.+.|+.|+
T Consensus       322 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~  369 (390)
T TIGR02718       322 VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGY  369 (390)
T ss_pred             HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            33 5666677766 8899999999999999999999999999998874

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10133 L-fucose transporter; Provisional

Probab=99.96  E-value=4.7e-27  Score=218.59  Aligned_cols=325  Identities=11%  Similarity=0.030  Sum_probs=229.4

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHH---HHhccCcchHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAI---AILSQSSISIFTMS   81 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   81 (408)
                      .+++++|+|+.+.|+..+...+++.+ +++.|+++||     +|||+.+..+..+.+++.+++   ..++    +++.++
T Consensus        51 ~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-----~G~r~~l~~g~~~~~~~~~l~~~~~~a~----~~~~ll  121 (438)
T PRK10133         51 QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-----LSYKAGIITGLFLYALGAALFWPAAEIM----NYTLFL  121 (438)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHH
Confidence            46899999999999999999988887 9999999999     999999999999999998775   3456    899999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh-c------------
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID-R------------  148 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~-~------------  148 (408)
                      +.|+++|++.+..++..++++.|..+++         +|.+.++..+...++|..+|+.+++.+.. .            
T Consensus       122 ~~r~l~G~g~g~~~~~~~~~v~~~~~~~---------~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l  192 (438)
T PRK10133        122 VGLFIIAAGLGCLETAANPFVTVLGPES---------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKM  192 (438)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCChh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhcc
Confidence            9999999999999999999999875443         35556888888999999999998876541 0            


Q ss_pred             -------------CChhhHHHHHHHHHHHHHHHhh--hcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHh
Q 015348          149 -------------FSPPSMFLFFGLLVVLQFFITI--AVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAA  213 (408)
Q Consensus       149 -------------~g~~~~f~i~~~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (408)
                                   .+||.+|+....+..+..+...  ..||.++++++  + ++.++..++.++.+++|.++...+..++
T Consensus       193 ~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~--~-~~~~~~~~~~~~ll~~~~~~~~~l~~~~  269 (438)
T PRK10133        193 TPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS--D-AKQGSFSASLSRLARIRHWRWAVLAQFC  269 (438)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--c-ccccchhhhHHHHHhCchHHHHHHHHHH
Confidence                         2466666543333332222222  24443221111  1 0111122334456888887766554444


Q ss_pred             hhcccccccceeEEE-EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhccc
Q 015348          214 SYSIIPVLTGTMFFY-QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGV  292 (408)
Q Consensus       214 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (408)
                      ..........+.+.| .++..|.++.+.+.......++.+++.++.+++.||+++|+.+..+..+.....+....     
T Consensus       270 ~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~-----  344 (438)
T PRK10133        270 YVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-----  344 (438)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-----
Confidence            333323233344444 34568999999999999999999999999999999999999887776555444333221     


Q ss_pred             ccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          293 YREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                           .+..  .........+++.+...|. ++...+..|+ +.+++.++.. ...+++.++|.+.|.+.|..|
T Consensus       345 -----~~~~--~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g  409 (438)
T PRK10133        345 -----AGGH--VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_pred             -----cCCh--HHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHHHhcc
Confidence                 0111  1123345567777777787 7777787765 4677777775 455788899999999999876

>PRK11462 putative transporter; Provisional

Probab=99.96  E-value=1.9e-26  Score=215.67  Aligned_cols=342  Identities=14%  Similarity=0.154  Sum_probs=236.7

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhc-ccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCc--chHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSS--ISIFT   79 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~   79 (408)
                      +.+|+++.+|+++..+|.+..+.. +..+..|+.|.++||+++|+.+|||+++++.+..+++..++...++.+  .....
T Consensus        32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y  111 (460)
T PRK11462         32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY  111 (460)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            567888999999999999999988 566669999999999999998999999999999988888777665311  12456


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC-------Chh
Q 015348           80 MSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRF-------SPP  152 (408)
Q Consensus        80 ~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~-------g~~  152 (408)
                      +.+...+..++..+.+.+..++.+|++++.+        +|++..++...+.++|..+++.+...+.+..       +|+
T Consensus       112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--------eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~  183 (460)
T PRK11462        112 AAITYTLLTLLYTVVNIPYCALGGVITNDPT--------QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ  183 (460)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence            6777788899999999999999999999876        6999999999999999888877765554433       577


Q ss_pred             hHHHHHHHHHHHHHHHhhh-cccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEe
Q 015348          153 SMFLFFGLLVVLQFFITIA-VRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQ  231 (408)
Q Consensus       153 ~~f~i~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (408)
                      ....+.+++.++.....+. .||++++++   ++.+.++.   ++..++||.++..+...++.............+|.+.
T Consensus       184 ~~~~i~~ii~~i~~~i~~~~~kE~~~~~~---~~~~~~~~---l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y  257 (460)
T PRK11462        184 GGIAVLSVVAFMMLAFCFFTTKERVEAPP---TTTSMRED---LRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTW  257 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhcceeccCCCc---cCCCHHHH---HHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Confidence            7777777666665544444 566543221   11234443   3445889988776655444333333333334444444


Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHH
Q 015348          232 NLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLL  311 (408)
Q Consensus       232 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                      ..|. +...+.+.....++.+++..+++++.||+++|+....+.....+..+...+        .+..... ......+.
T Consensus       258 ~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~l  327 (460)
T PRK11462        258 ILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFF--------VPMQASI-TMFVFIFV  327 (460)
T ss_pred             hcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--------hchhHHH-HHHHHHHH
Confidence            4553 344556667778888999999999999999887765444433332222111        0111111 11222223


Q ss_pred             HHHHHHhhhhH-HHHHHHhcC-------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015348          312 EVMFFFKILPF-SVYIAQVCP-------PGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTG  368 (408)
Q Consensus       312 ~~~~~~~~~~~-~~~~~~~~p-------~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~  368 (408)
                      .+++.....+. +++..|..+       ++.+|..++..+...++|..+++.++|.+.+..|+..
T Consensus       328 ~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~~  392 (460)
T PRK11462        328 IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDA  392 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34444444444 666666665       4567888899889999999999999999999888864

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.96  E-value=6.9e-28  Score=222.82  Aligned_cols=333  Identities=15%  Similarity=0.148  Sum_probs=227.4

Q ss_pred             hhhhhcc--CCCHHHHHHHHHhhc-----ccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcch
Q 015348            5 FFLKDSL--NVDPSTLQLLQNSAN-----LPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSIS   76 (408)
Q Consensus         5 ~~l~~~l--~~s~~~~g~~~~~~~-----~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~   76 (408)
                      .++.++.  +.++.+.+...+...     +...+ +++.|+++||     +|||+.+..+.++..++.+++.+.+    +
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~~~----~   87 (394)
T TIGR00883        17 VLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-----IGRKKTLVITLLMMGIGTLLIGLLP----S   87 (394)
T ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-----hhhHHHHHHHHHHHHHHHHHHhhCC----C
Confidence            3444443  355666666665433     22233 7899999999     9999999999999999999988887    5


Q ss_pred             HH--------HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh--
Q 015348           77 IF--------TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAI--  146 (408)
Q Consensus        77 ~~--------~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~--  146 (408)
                      ++        .+++.|+++|++.+...+...+++.|+.++++         |++..+..+.+..+|.++++.++..+.  
T Consensus        88 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~  158 (394)
T TIGR00883        88 YATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK---------RGFYGSFQQVGAPVGLLLAALTVLLLSYL  158 (394)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43        57888999999999999988899999988754         999999999999999999998877654  


Q ss_pred             ------hcCChhhHHHHHHHHHHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccch--hHHHHHHHHhhhccc
Q 015348          147 ------DRFSPPSMFLFFGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPE--IMYSVAWFAASYSII  218 (408)
Q Consensus       147 ------~~~g~~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  218 (408)
                            +..+||+.|.+.++..++........||+++.+++++++++.+   ++.++.++++.  ++......++.....
T Consensus       159 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (394)
T TIGR00883       159 LGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKR---GPIRETLTKHRKPFLLGLGLVIATTTTF  235 (394)
T ss_pred             cCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhcccccc---CCHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence                  3578999999887776665555445666543322111111111   12223344443  444444444433333


Q ss_pred             ccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCc
Q 015348          219 PVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGV  298 (408)
Q Consensus       219 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (408)
                      .......+.|..++.|.++.+.+.......++.+++.++.+++.||+++|+.+.....+...........       ...
T Consensus       236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------~~~  308 (394)
T TIGR00883       236 YLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA-------LLD  308 (394)
T ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-------Hhc
Confidence            3344555666667788999999998888999999999999999999999987665444333322111110       000


Q ss_pred             CceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Q 015348          299 PDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVM-SAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~-~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      ....+.........+++.....+. .+.+.|..|+++|+++.|+.. ....+|..++|.++|.+.|+.|
T Consensus       309 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       309 SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            112222233334444444334444 889999999999999999854 4456788899999999999877

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09848 glucuronide transporter; Provisional

Probab=99.96  E-value=3.9e-26  Score=214.30  Aligned_cols=343  Identities=11%  Similarity=0.067  Sum_probs=225.3

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC---cchHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS---SISIF   78 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~---~~~~~   78 (408)
                      +.+|+++++|+|+.++|.+.+...+...+ +|++|.++||++.|+.+||+++..+.+...+...++...+..   ....+
T Consensus        31 l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (448)
T PRK09848         31 LLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV  110 (448)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence            45688999999999999999998865554 999999999998877777888888877666555554322211   11334


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHH-----HHHHHHHHHHHHHhhcC--Ch
Q 015348           79 TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSS-----MGGVLGNLLVGFAIDRF--SP  151 (408)
Q Consensus        79 ~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~g~~ig~~l~~~l~~~~--g~  151 (408)
                      ..+....+.+++.++..++..++..+..++.+        +|.+..++...+.+     ++..++|.+++..-+..  +|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--------~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~  182 (448)
T PRK09848        111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--------SRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVY  182 (448)
T ss_pred             HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhH
Confidence            45556678889999999888898888887755        47777766654433     44455555554321111  12


Q ss_pred             hhHHHHHHHHHHHHHHHhh-hcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEE
Q 015348          152 PSMFLFFGLLVVLQFFITI-AVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQT  230 (408)
Q Consensus       152 ~~~f~i~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (408)
                      .....+.+++.++..+... ..||+++++.+   +.+.++.   .++.+|||.++...+..++............++|.+
T Consensus       183 ~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~---~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (448)
T PRK09848        183 HFWTIVLAIAGMVLYFICFKSTRENVVRIVA---QPSLKIS---LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVR  256 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcEeccCCCcc---CCCHHHH---HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEe
Confidence            1112222333333222222 35665432221   1223333   445589999888777666645544455556777788


Q ss_pred             eccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHH
Q 015348          231 QNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSL  310 (408)
Q Consensus       231 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (408)
                      +.+|.++...++......++.+++.++.+++.||+++|+.+..+.++..+..+...+         ......+......+
T Consensus       257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~---------~~~~~~~~~~~~~~  327 (448)
T PRK09848        257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW---------VSVWSLPVALVALA  327 (448)
T ss_pred             eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH---------cCchhHHHHHHHHH
Confidence            888877766555555556778889999999999999999988887666555433221         01111222333344


Q ss_pred             HHHHHHHhhhhH-HHHHHHhcCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015348          311 LEVMFFFKILPF-SVYIAQVCPPG-------CEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTG  368 (408)
Q Consensus       311 ~~~~~~~~~~~~-~~~~~~~~p~~-------~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~  368 (408)
                      ..+++.....+. .++.++..|++       ++|..+|+.+....+|..+|+.+.|.+.+..|++.
T Consensus       328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~  393 (448)
T PRK09848        328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIA  393 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            556665555555 77878877654       46999999999999999999999999999988753

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.96  E-value=1.1e-26  Score=220.95  Aligned_cols=372  Identities=10%  Similarity=0.068  Sum_probs=233.1

Q ss_pred             cCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCc--chHHHHHHHHHHH
Q 015348           11 LNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSS--ISIFTMSLFLLLS   87 (408)
Q Consensus        11 l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~   87 (408)
                      .+.++.+.+++.+...++.++ ++++|+++||     +|||+.+..+.++..++.+++++++...  .+++.+++.|++.
T Consensus        51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-----~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~  125 (502)
T TIGR00887        51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-----LGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWL  125 (502)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHH
Confidence            355677888899888887777 9999999999     9999999999999999988888776211  1278899999999


Q ss_pred             HHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh--------------------
Q 015348           88 NLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID--------------------  147 (408)
Q Consensus        88 g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~--------------------  147 (408)
                      |++.+...+....++.|++|+++         |++..++.+....+|.++++.++..+..                    
T Consensus       126 G~~~g~~~~~~~~~~~e~~p~~~---------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (502)
T TIGR00887       126 GVGIGGDYPLSAIITSEFATKKW---------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCV  196 (502)
T ss_pred             HHHHhhhhHHHHHHHHHhcChhh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccc
Confidence            99999999999999999999864         9999999999999999999988876532                    


Q ss_pred             ---cCChhhHHHHHHHHHHHHHHHhhhccccccc---CCCCCc-----------------chh-------HHHHHHHHHH
Q 015348          148 ---RFSPPSMFLFFGLLVVLQFFITIAVRESALK---LPKSQS-----------------NVG-------IRAQLSELSA  197 (408)
Q Consensus       148 ---~~g~~~~f~i~~~~~~~~~~~~~~~~e~~~~---~~~~~~-----------------~~~-------~~~~~~~~~~  197 (408)
                         .++||++|.+.+++.++..+..+++||+|+.   +.++++                 .++       .++...++++
T Consensus       197 ~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (502)
T TIGR00887       197 PAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSD  276 (502)
T ss_pred             chhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHH
Confidence               2479999988888777776767779998652   111000                 000       0000012333


Q ss_pred             hccc---chhHHHHHH----HHhhhcccccccceeEEEEEeccCCChhhHH-----------H-HHHHHHHHHHHHHHHH
Q 015348          198 ALRK---PEIMYSVAW----FAASYSIIPVLTGTMFFYQTQNLKIRSSVLG-----------I-SKVFGQAAMLLWGVIY  258 (408)
Q Consensus       198 ~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-----------~-~~~~~~~~~~~~~~~~  258 (408)
                      .+++   +..++..+.    .+...........+.|.+. ++.|++....+           . ......++.+++.++.
T Consensus       277 l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~  355 (502)
T TIGR00887       277 FFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVIL-SAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVT  355 (502)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHH-HHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332   121121111    1111111112222233333 34566543211           1 2334455677788999


Q ss_pred             HHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHH
Q 015348          259 NSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGS  337 (408)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~  337 (408)
                      +++.||+|||+.+..+..+..+...........      .+... ......+...+......+. +.+..|..|++.|++
T Consensus       356 ~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~  428 (502)
T TIGR00887       356 VFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH------LSTHG-FLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRST  428 (502)
T ss_pred             HHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh------cchhH-HHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHH
Confidence            999999999998877766655544332211100      00110 1111111112222233444 677899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CCCchHHHHHHHHhhhhhhhhhhhccCCCCCCcchh
Q 015348          338 IMAFVMSAVALAFIVSGYLGVALASYTGVTGD---DFSGLPLALIIQAVCTILPLYWSYFMPDGVKSKTTK  405 (408)
Q Consensus       338 ~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (408)
                      ..|+.+.+.++++.++|.+.+.+.+..+.+..   ... ....+.+.+++.++..+..+++||+++++.+|
T Consensus       429 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~i~~~~lpEt~~~~lee  498 (502)
T TIGR00887       429 AHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW-MGHVLEIFALFMFLGILFTLLIPETKGKSLEE  498 (502)
T ss_pred             HHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc-chHHHHHHHHHHHHHHHHheEeccCCCCCHHh
Confidence            99999999999999999999999875432100   011 11122222222233333445678877655443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00896 CynX cyanate transporter

Probab=99.95  E-value=9.3e-27  Score=212.09  Aligned_cols=322  Identities=14%  Similarity=0.066  Sum_probs=229.3

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      ..+++|+|.|+++.|++.+...+.+.+ +++.|+++||     +|||+.+..+.+...++.+.+ ..+    +.+.+++.
T Consensus        24 p~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~-~~~----~~~~l~~~   93 (355)
T TIGR00896        24 PQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-----FGEERSVAAGLLLIAAGILIR-SAP----GTALLFAG   93 (355)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCchHHHHHHHHHHHHHHHHH-Hhc----cHHHHHHH
Confidence            357789999999999999999988777 9999999999     999999999988887777766 556    78888999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC--ChhhHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRF--SPPSMFLFFGLL  161 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~--g~~~~f~i~~~~  161 (408)
                      |++.|++.+...+...+.+.|..++          +|+++++..+...++|..+++.+++.+.+..  +||+.|.+.+..
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~  163 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFPQ----------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALP  163 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCcc----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            9999999999888877777777653          4899999999999999999999999887764  399998877655


Q ss_pred             HHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHH
Q 015348          162 VVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLG  241 (408)
Q Consensus       162 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  241 (408)
                      .++...  .++||.+++++++++.  .+   +..++.+|+|.++...+...+..........+.+.|.+ +.|.+..+.+
T Consensus       164 ~~~~~~--~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~g~~~~~~g  235 (355)
T TIGR00896       164 ALLALL--AWIPQVRRRVAANQTT--TR---LTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILI-SHGASAATAG  235 (355)
T ss_pred             HHHHHH--HHhhhhccccCCCCCC--CC---CCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHH
Confidence            443322  2234433222111110  00   11234477888776655444433333333444555554 4799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCC-ceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhh
Q 015348          242 ISKVFGQAAMLLWGVIYNSGLKSVSP-RKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKIL  320 (408)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (408)
                      ...+...++.+++.++.+++.||++. |+.+..+.....+..+...+         ...+.  . .......+++.+...
T Consensus       236 ~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~-~~~~~l~g~~~g~~~  303 (355)
T TIGR00896       236 SLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF---------APMHG--L-WAWALVLGLGQGGAF  303 (355)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH---------hhhhH--H-HHHHHHHHHhhhhHh
Confidence            99999999999999999999999954 44544544444443322111         00011  1 112344566666666


Q ss_pred             hH-HHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          321 PF-SVYIAQVC-PPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       321 ~~-~~~~~~~~-p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      |. .+...+.. +++++++..++.+...+++..++|.+.|.+.|+.|.
T Consensus       304 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       304 PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            66 55555444 456789999999999999999999999999998874

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.95  E-value=2.5e-27  Score=218.99  Aligned_cols=336  Identities=13%  Similarity=0.094  Sum_probs=219.8

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHH---HhccC-cchH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIA---ILSQS-SISI   77 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~---~~~~~-~~~~   77 (408)
                      ++.|+++++|.|+.+.|++.+...+...+ +|++|+++||     +|||+.++.+....++......   +.+.. ....
T Consensus        25 ~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-----~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (396)
T TIGR00882        25 FPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-----LGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNIL   99 (396)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            35678889999999999999999987777 9999999999     9999999877665554433221   11100 0023


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHH
Q 015348           78 FTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLF  157 (408)
Q Consensus        78 ~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i  157 (408)
                      ....+.+++.|++.+...+..+++..+..++           +++..+......++|.++||.+++.+.+ .+||.+|++
T Consensus       100 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~  167 (396)
T TIGR00882       100 VGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN-----------SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWL  167 (396)
T ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHhhhh-----------cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHH
Confidence            3445667788888877777776666554332           3334455555889999999999998865 599999999


Q ss_pred             HHHHHHHHHHHhhh-cccccccCCCCCc--chhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEecc-
Q 015348          158 FGLLVVLQFFITIA-VRESALKLPKSQS--NVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNL-  233 (408)
Q Consensus       158 ~~~~~~~~~~~~~~-~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  233 (408)
                      .+++.++..+..+. .||++++++.+++  +++.++..++.++.+|||.++...+..+.............+.|..+.. 
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~  247 (396)
T TIGR00882       168 GSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFA  247 (396)
T ss_pred             HHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88888777655555 4443222111000  0011112344566789998876665544423222222222333333322 


Q ss_pred             --CCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHH
Q 015348          234 --KIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLL  311 (408)
Q Consensus       234 --g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                        +.+....|.......+...++....+++.||+++|+.+..+..+.++......           ...+.+.+......
T Consensus       248 ~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~-----------~~~~~~~~~~~~~l  316 (396)
T TIGR00882       248 TPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS-----------FATTALEVVILKML  316 (396)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-----------hcCChHHHHHHHHH
Confidence              55666788888888888899999999999999999988777666555443311           11222233334444


Q ss_pred             HHHHHHhhhhH-HHHHHHhcCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          312 EVMFFFKILPF-SVYIAQVCPPGCEGSIMAF-VMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       312 ~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~-~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .+++....... ..+..+..|++.+++..+. .+...++|+.+++.++|++.|..|+
T Consensus       317 ~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~  373 (396)
T TIGR00882       317 HAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGF  373 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence            45444333222 4456677788888887776 6788999999999999999998875

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.95  E-value=1.5e-26  Score=240.79  Aligned_cols=337  Identities=11%  Similarity=0.037  Sum_probs=238.5

Q ss_pred             hccCCCH-HHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHH---HHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            9 DSLNVDP-STLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAI---GAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         9 ~~l~~s~-~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      ++.+.+. ...++..+++.+++++ +|++|.++||     ++||+++..   ..+......+.....+    +++++++.
T Consensus        44 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr-----~~rk~~~~~~~~~~~~~~~~~~~~~~~~----s~~~l~~~  114 (1140)
T PRK06814         44 GALGAYNNALVTLAGAVFILPFFIFSALAGQLADK-----YDKAKLAKILKFAEIGIAALAIYGFHLN----SVPLLFAA  114 (1140)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHH
Confidence            3344433 4577777788888877 9999999999     999997643   2222222222223335    89999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVV  163 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~  163 (408)
                      |+++|++.++..++..+++.++.++++         |++++++.+++.++|.++||.++|++....+|++.|+...+..+
T Consensus       115 ~~l~gi~~a~~~p~~~a~l~~~~~~~~---------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~  185 (1140)
T PRK06814        115 LFLMGIHSALFGPIKYSILPDHLNKDE---------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAV  185 (1140)
T ss_pred             HHHHHHHHHhhchHHHHhhHhhcCccc---------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            999999999999999999999999864         99999999999999999999999999999999999955555555


Q ss_pred             HHHHHhhhcccccccCCCCC-cchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHH
Q 015348          164 LQFFITIAVRESALKLPKSQ-SNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGI  242 (408)
Q Consensus       164 ~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~  242 (408)
                      +..+..+++++++..+.+.+ +....++....++...++|.++...+..++.+........+.+.|..+.+|.++...|+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~  265 (1140)
T PRK06814        186 LGWLASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATL  265 (1140)
T ss_pred             HHHHHHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHH
Confidence            55555566776643322211 11112223334556678888888777666545544455566777788888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhccc---ccc------cCcCceEeehhhhHHHHH
Q 015348          243 SKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGV---YRE------MGVPDSLYVLIFSSLLEV  313 (408)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~  313 (408)
                      +.+...++.+++.++.+++.|+..+++.+..+.++.++..+...+.....   ...      +......+.+.+..+..+
T Consensus       266 ~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  345 (1140)
T PRK06814        266 FLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLA  345 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHH
Confidence            99999999999999999999887776666555544444332211100000   000      000122223344445555


Q ss_pred             HHHHhhhh-HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          314 MFFFKILP-FSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       314 ~~~~~~~~-~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                      ++.+...+ ..+++++.+|++.+|+++|+.++..+++..+++.+.|.+.+.
T Consensus       346 ~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~  396 (1140)
T PRK06814        346 AAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL  396 (1140)
T ss_pred             HHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65554444 489999999999999999999999999999999999988753

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.95  E-value=3e-27  Score=222.66  Aligned_cols=244  Identities=11%  Similarity=0.037  Sum_probs=181.0

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      ++++++|+|+.+.+++.+...+.+.+ +++.|+++||     +|||+++..+.+..+++.+++++.+    +++.+++.|
T Consensus        61 ~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-----~G~r~~~~~~~~~~~~~~~~~~~~~----s~~~l~~~r  131 (476)
T PLN00028         61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-----YGPRYGSAFLLMLTAPAVFCMSLVS----SATGFIAVR  131 (476)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCChHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHH
Confidence            57789999999999998888877776 8999999999     9999999999999999988888888    899999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh---------cCChhhHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID---------RFSPPSMF  155 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~---------~~g~~~~f  155 (408)
                      ++.|++.+...+ ...++.|+.|++         +||+++++.+...++|..+++.+.+.+..         ..|||+.|
T Consensus       132 ~l~G~~~~~~~~-~~~~i~~~~~~~---------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f  201 (476)
T PLN00028        132 FFIGFSLATFVS-CQYWMSTMFNGK---------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAF  201 (476)
T ss_pred             HHHHHHHHhhHH-HHHHHHHhcChh---------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence            999999886544 446788999875         49999999887777888777666654432         25899999


Q ss_pred             HHHHHHHHHHHHHhhhcccccccCC-C---CCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEe
Q 015348          156 LFFGLLVVLQFFITIAVRESALKLP-K---SQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQ  231 (408)
Q Consensus       156 ~i~~~~~~~~~~~~~~~~e~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (408)
                      ++.+++.++..+..+++++++++.+ +   ++.+.+.++..+.+++.++++.+|...+..+...........+.+.|..+
T Consensus       202 ~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~  281 (476)
T PLN00028        202 FVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYD  281 (476)
T ss_pred             HHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            9999888777666555443322111 0   00000011112334555788887776655444333223334445566666


Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 015348          232 NLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPR  268 (408)
Q Consensus       232 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~  268 (408)
                      +.|++..+.+....+..++.+++.++.|+++||+++|
T Consensus       282 ~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        282 RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            7899999999999999999999999999999998765

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.7e-28  Score=210.63  Aligned_cols=328  Identities=16%  Similarity=0.176  Sum_probs=253.4

Q ss_pred             ccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Q 015348           10 SLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSN   88 (408)
Q Consensus        10 ~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g   88 (408)
                      +.+-+.+++|++.+...+..++ +|+.|.+.||     .|+|-.+++|......+++++++..    +++.+++.|.++|
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-----iGy~ipm~~Gl~vmf~sTilFafg~----sy~~l~vAR~LQg  170 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-----IGYKIPMVAGLFVMFLSTILFAFGN----SYPMLFVARSLQG  170 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHH-----hccccHHHHHHHHHHHHHHHHHHcc----hhHHHHHHHHHhh
Confidence            4566779999999999866665 9999999999     9999999999999999999999999    9999999999999


Q ss_pred             HHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHH
Q 015348           89 LGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFI  168 (408)
Q Consensus        89 ~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~~~  168 (408)
                      +|.++.++...++++|.+|+++        +|+++++..-.+.++|.++||.+||.+++..|.+.+|++.+.++++...+
T Consensus       171 vgsA~~~tsglamlAd~f~~d~--------er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L  242 (464)
T KOG3764|consen  171 VGSAFADTSGLAMLADVFPEDN--------ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGAL  242 (464)
T ss_pred             hhHHHHHhhhHHHHHHHcccch--------hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHH
Confidence            9999999999999999999987        69999999999999999999999999999999999999999999998888


Q ss_pred             hhhcccccccCC-CCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHH
Q 015348          169 TIAVRESALKLP-KSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFG  247 (408)
Q Consensus       169 ~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~  247 (408)
                      .+++-|+.+.++ +.+       +-+++++++++|.++.........+..........+.|..+.+..+..+.|......
T Consensus       243 ~l~vi~p~~~~~~~~~-------~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~  315 (464)
T KOG3764|consen  243 QLLVIEPTEMDPDSTE-------QGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPA  315 (464)
T ss_pred             HHheeCccccCccccc-------cCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeeccc
Confidence            777544432222 211       122345668899888776666565666666777777778888886667999999889


Q ss_pred             HHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHH-hHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhHHHHH
Q 015348          248 QAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMIS-DVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYI  326 (408)
Q Consensus       248 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (408)
                      .+...++..+.+++.||+++.+.+.....+......+ ...+...      ....+.......+..+.......|...++
T Consensus       316 ~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~------~~~L~vp~~~l~~~i~~~dasl~P~l~~l  389 (464)
T KOG3764|consen  316 SLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS------IAQLWVPNFGLGFGIGLADASLIPTLGYL  389 (464)
T ss_pred             ccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh------HHHHhhhhHHHHHHHHHHHHHHhhhhHHh
Confidence            9999999999999999999555443332222222111 1111110      11111111222333334456667775555


Q ss_pred             HHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          327 AQVCPPG---CEGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       327 ~~~~p~~---~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      .+....+   ..|.++++......+|..+||.++|.+.+..|..
T Consensus       390 vd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~  433 (464)
T KOG3764|consen  390 VDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFE  433 (464)
T ss_pred             cchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHH
Confidence            5554444   7799999999999999999999999999998864

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.95  E-value=7.5e-26  Score=206.76  Aligned_cols=329  Identities=10%  Similarity=0.036  Sum_probs=223.5

Q ss_pred             hhhh-ccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHh-ccCcchHHHHHH
Q 015348            6 FLKD-SLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAIL-SQSSISIFTMSL   82 (408)
Q Consensus         6 ~l~~-~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   82 (408)
                      .+.+ |+|+|++|.+++.++..+.+.+ +++.|.+.||     +|.|+++.++.++..+..+.+++. ++...+++.+++
T Consensus        59 ~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-----~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli  133 (462)
T PRK15034         59 NLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-----FGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIV  133 (462)
T ss_pred             HhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHH
Confidence            4444 8999999999999999877666 7888999999     999999999999999999988876 111128999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh-----h----------
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAI-----D----------  147 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~-----~----------  147 (408)
                      .|++.|++ +...+.....+.++.|+++         ||+++++.....++|..+++.+...+.     +          
T Consensus       134 ~r~l~Gig-g~~f~~~~~~vs~wfp~~~---------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~  203 (462)
T PRK15034        134 IALLCGFA-GANFASSMGNISFFFPKAK---------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQA  203 (462)
T ss_pred             HHHHHHHH-HHhHHHHHHHHHHHCCHhH---------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            99999998 5566667799999998764         999999997777777776666554433     2          


Q ss_pred             ---cCChhhHHHHHHHHHHHHHHHhhh-cccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccc
Q 015348          148 ---RFSPPSMFLFFGLLVVLQFFITIA-VRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTG  223 (408)
Q Consensus       148 ---~~g~~~~f~i~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (408)
                         ..+||...++..++.++..+..++ .+++++. +         ...++..+.+|+|+.|...+..+..+..+..+..
T Consensus       204 ~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-~---------~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~  273 (462)
T PRK15034        204 DGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS-R---------ASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSA  273 (462)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-c---------cCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHH
Confidence               233677777777766666555444 3433221 1         1134445569999999998888876666665655


Q ss_pred             eeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEe
Q 015348          224 TMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLY  303 (408)
Q Consensus       224 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      +.|+|.++.+  +.........+..+...+..++.|+++||+|+++++.++.+...+............     .....+
T Consensus       274 ~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~-----~~~~~~  346 (462)
T PRK15034        274 GFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT-----GSGNFI  346 (462)
T ss_pred             HHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc-----cccHHH
Confidence            6666655533  333333334455677888889999999999999998888776665543322211100     001111


Q ss_pred             ehhhhHHHHHHH-HHhhhhHHHHHHHhcCC---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          304 VLIFSSLLEVMF-FFKILPFSVYIAQVCPP---------------------GCEGSIMAFVMSAVALAFIVSGYLGVALA  361 (408)
Q Consensus       304 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~---------------------~~~g~~~g~~~~~~~lg~~ig~~~~g~l~  361 (408)
                      ......+..++. ........-++.++.|+                     ++.|.+.|+....+.+|+++-|.+.|...
T Consensus       347 ~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~  426 (462)
T PRK15034        347 AFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSL  426 (462)
T ss_pred             HHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHH
Confidence            111111111111 12222334455555553                     26788999999999999999999989988


Q ss_pred             HhcCC
Q 015348          362 SYTGV  366 (408)
Q Consensus       362 ~~~g~  366 (408)
                      +..|.
T Consensus       427 ~~~g~  431 (462)
T PRK15034        427 NMTGS  431 (462)
T ss_pred             HHcCC
Confidence            88764

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.95  E-value=1.1e-25  Score=235.13  Aligned_cols=329  Identities=11%  Similarity=0.022  Sum_probs=234.2

Q ss_pred             hhhhhccCCC--HHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHH---HhccCcchHH
Q 015348            5 FFLKDSLNVD--PSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIA---ILSQSSISIF   78 (408)
Q Consensus         5 ~~l~~~l~~s--~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~---~~~~~~~~~~   78 (408)
                      .++..+++.+  ....+++.+++.+++.+ ++++|+++||     +|||++++.+.++..+..++..   ...    +++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-----~grk~~l~~~~~~~~~~~~~~~~~~~~~----~~~  104 (1146)
T PRK08633         34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-----FSKNRVIRIVKLFEVGLTLLIVLAYYLG----WFW  104 (1146)
T ss_pred             HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHc----cHH
Confidence            3444556654  35578888888888777 9999999999     9999999988776555554433   335    789


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--------C-
Q 015348           79 TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR--------F-  149 (408)
Q Consensus        79 ~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~--------~-  149 (408)
                      .+++.|++.|++.+...+...+++.|+.++++         |++++++...+.++|.++|+.+++++.+.        + 
T Consensus       105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~  175 (1146)
T PRK08633        105 LAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN---------LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL  175 (1146)
T ss_pred             HHHHHHHHHHHHHHhhchHHHhhhHHhcCccc---------chhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence            99999999999999999999999999999854         99999999999999999999999999875        2 


Q ss_pred             ChhhHHHHHHHHHH-HHHHHhhhcccccccCCCC---CcchhHHHHHHHHHHhcccchhHHHHHHHHhhhccccccccee
Q 015348          150 SPPSMFLFFGLLVV-LQFFITIAVRESALKLPKS---QSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTM  225 (408)
Q Consensus       150 g~~~~f~i~~~~~~-~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (408)
                      +|++.+.+..+... +..+..+.+||.+......   ++....++..+.++..+++|.++..++..++.+..........
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (1146)
T PRK08633        176 GRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANF  255 (1146)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444444333332 2333344566654332221   1111222333445556788887776655555344444445556


Q ss_pred             EEEEEeccCCChh-hHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEee
Q 015348          226 FFYQTQNLKIRSS-VLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYV  304 (408)
Q Consensus       226 ~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (408)
                      +.|..+.+|.+.. ..|++.....++.+++.++.+++.||+++++.+.++.++.++..+...+           ....+.
T Consensus       256 ~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~  324 (1146)
T PRK08633        256 PAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT-----------APSLAS  324 (1146)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH-----------hhhHHH
Confidence            6677777899988 8999999999999999999999999999888777666555544333211           112223


Q ss_pred             hhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          305 LIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALAS  362 (408)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~  362 (408)
                      .....+..+++.+...+. .+++++..|++.||+++|+.+.+.+++..+++.+++.+..
T Consensus       325 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        325 VLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555444444 8888999999999999999999999999888887776654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.95  E-value=1.7e-25  Score=206.38  Aligned_cols=329  Identities=11%  Similarity=0.061  Sum_probs=229.5

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      ...+++++|.|+.|.|++.+...+++.+ +++.|++.||     +|||+.+..+..+.+++.+++..... ..+++.+++
T Consensus        26 ~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-----~G~r~~~~~g~~l~~~g~~l~~~~~~-~~~~~~~l~   99 (410)
T TIGR00885        26 VPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-----LSYKAGILLGLFLYALGAFLFWPAAE-IMNYTLFLV   99 (410)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHH
Confidence            3456899999999999999999988877 9999999999     99999999999999988877644321 127899999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--------------
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR--------------  148 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~--------------  148 (408)
                      .|++.|++.+...+..++++.+..|+++         |++..+..+...++|..+||.+++.+...              
T Consensus       100 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~  170 (410)
T TIGR00885       100 GLFILTAGLGFLETAANPYILVMGPEST---------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLS  170 (410)
T ss_pred             HHHHHHhhHHHHHhhhhHHHHHHCCHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcC
Confidence            9999999999999999999999887653         77888888999999999999998877532              


Q ss_pred             ------------CChhhHHHHHHHHHHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhc
Q 015348          149 ------------FSPPSMFLFFGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYS  216 (408)
Q Consensus       149 ------------~g~~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (408)
                                  .+||++|++.+++.++..+...+.++++.++++ +++++.++   +.++.+|+|.++...+..++...
T Consensus       171 ~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~l~~f~yvg  246 (410)
T TIGR00885       171 PEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSD-AKQISFSA---SLSRLARIRHYREGVIAQFFYVG  246 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cccccchh---hHHHHHhChhHHHHHHHHHHHHH
Confidence                        359999999888776665444333333211111 11111222   22345788888776666666333


Q ss_pred             ccccccceeEEEEEec-cCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccc
Q 015348          217 IIPVLTGTMFFYQTQN-LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYRE  295 (408)
Q Consensus       217 ~~~~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (408)
                      ......+..+.|..+. .+.+....+........+..+|.++.+++.||+++|+.+..+.....+..++...        
T Consensus       247 ~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~--------  318 (410)
T TIGR00885       247 VQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF--------  318 (410)
T ss_pred             HHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH--------
Confidence            3333334444444332 2334444444455555677889999999999999998887776666655444221        


Q ss_pred             cCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          296 MGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                        .+..  .........+++.....|. .++..+..+++.+....++.++.  +|+.+.|.+.|.+.|..|
T Consensus       319 --~~~~--~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~  383 (410)
T TIGR00885       319 --AGGH--VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKE  383 (410)
T ss_pred             --cCCh--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhc
Confidence              1111  1122333344445445577 88888888877655455555443  999999999999999764

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=5.5e-25  Score=200.04  Aligned_cols=369  Identities=16%  Similarity=0.131  Sum_probs=258.7

Q ss_pred             hccC--CCHHHHHHHHHhh----cccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            9 DSLN--VDPSTLQLLQNSA----NLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         9 ~~l~--~s~~~~g~~~~~~----~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      +++|  .|+++..++.+..    .++.++ +.+.|.++||     +|||..+.++.++..++.+++.++... .++..++
T Consensus        47 ~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~-----~GRK~~l~~~~~l~~~~~~~~~~s~~~-~~~e~li  120 (485)
T KOG0569|consen   47 ERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADR-----FGRKNALLLSNLLAVLAALLMGLSKSA-PSFEMLI  120 (485)
T ss_pred             HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHH
Confidence            4455  6666666555544    466666 8899999999     999999999988887777776654422 2899999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHH--HhhcCChhhHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGF--AIDRFSPPSMFLFFG  159 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~--l~~~~g~~~~f~i~~  159 (408)
                      +.|++.|+..+.......-++.|..|++         .||........+..+|.+++..++.-  +-+...|++.+....
T Consensus       121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~---------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~  191 (485)
T KOG0569|consen  121 LGRLIVGLACGLSTGLVPMYLTEISPKN---------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPL  191 (485)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhhcChhh---------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHH
Confidence            9999999999999999999999999986         49999998888889998888766532  223456999999999


Q ss_pred             HHHHHHHHHhhhcccccccCCC---C---------------CcchhH-------H-H-----HHHHHHHhcccchhHHHH
Q 015348          160 LLVVLQFFITIAVRESALKLPK---S---------------QSNVGI-------R-A-----QLSELSAALRKPEIMYSV  208 (408)
Q Consensus       160 ~~~~~~~~~~~~~~e~~~~~~~---~---------------~~~~~~-------~-~-----~~~~~~~~~~~~~~~~~~  208 (408)
                      ++.++..+...++||+|+.--.   +               +.+++.       + +     ...++++.++||..+...
T Consensus       192 i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~  271 (485)
T KOG0569|consen  192 IPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPL  271 (485)
T ss_pred             HHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHH
Confidence            9999998889999999763110   0               000000       0 0     111356778888777764


Q ss_pred             HHHHhhhcccccccce-eEEEEE---eccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHH
Q 015348          209 AWFAASYSIIPVLTGT-MFFYQT---QNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMIS  284 (408)
Q Consensus       209 ~~~~~~~~~~~~~~~~-~~~~~~---~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  284 (408)
                      ...+.....+...... ..+|.+   +..|++..+.-+.....++...+..++...+.||.|||+++..+..++.+..+.
T Consensus       272 ~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~  351 (485)
T KOG0569|consen  272 LIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLL  351 (485)
T ss_pred             HHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            4443322222222222 222222   235889999999999999999999999999999999999999988888777544


Q ss_pred             hHhhhcccccccCcCceEeehhhhHHHHH-HHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          285 DVLFVKGVYREMGVPDSLYVLIFSSLLEV-MFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALAS  362 (408)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~  362 (408)
                      ........+. .. +...+..+...+.+. ....+..|+ +-+.+|++|++.|.++++....+..+.+++-......+.+
T Consensus       352 ~~~~~~l~~~-~~-~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~  429 (485)
T KOG0569|consen  352 MSIALFLSNS-FG-SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN  429 (485)
T ss_pred             HHHHHHHHHH-hh-hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3321111111 11 011111122222222 223455678 8899999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCchHHHHHHHHhhhhhhhhhhhccCCCCCCc
Q 015348          363 YTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSK  402 (408)
Q Consensus       363 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (408)
                      .+|.        +.++.....+.+..+..++++||++++.
T Consensus       430 ~~g~--------~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  430 VIGP--------YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             Hhcc--------hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            8874        2333444455556677788999988654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.2e-27  Score=205.73  Aligned_cols=336  Identities=13%  Similarity=0.109  Sum_probs=256.2

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcc-cccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANL-PMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~-~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      +...+++|+|+|+.|.+++.+++.+ +..+..+.|.+.||     +|.|++..++.++..+-.+..+++... .++|+++
T Consensus        36 l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-----fGgR~~~~~s~~l~~IP~~~~~~a~~~-~~~~~ll  109 (417)
T COG2223          36 LGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-----FGGRKWTILSMLLLLIPCLGLAFAVTY-PSTWQLL  109 (417)
T ss_pred             HHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-----cCchHHHHHHHHHHHHHHHHHHHHccC-CchHHHH
Confidence            4567889999999999999999995 45559999999999     999999999999999998888887632 2557999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC---hhhHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS---PPSMFLFF  158 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g---~~~~f~i~  158 (408)
                      +.+.+.|++.+...+.. +.+++++|+|+         +|.++++.. .+|+|..+...++..+....+   |+....+.
T Consensus       110 ~~gll~G~~GasFav~m-~~~s~~fP~~~---------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~  178 (417)
T COG2223         110 VIGLLLGLAGASFAVGM-PNASFFFPKEK---------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIY  178 (417)
T ss_pred             HHHHHHhcccceehccc-ccccccCChhh---------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999988877766 88999999874         999999998 999999999999999998888   99998888


Q ss_pred             HHHHHHHHHHh-hhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCCh
Q 015348          159 GLLVVLQFFIT-IAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRS  237 (408)
Q Consensus       159 ~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  237 (408)
                      .+..++..+.. +..+|.++.+...++   .+.  .+++...+||+.|.+.+..+..+..+..+..+.+.|++++++.++
T Consensus       179 ~~~l~v~~v~~~~~~~d~p~~r~~~~~---~~~--~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~  253 (417)
T COG2223         179 VVALAIAAVLAWLGMNDVPEHRASVKP---QLP--AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSP  253 (417)
T ss_pred             HHHHHHHHHHHHHHhCCChhhhccccc---cch--hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            88777765544 446665553222111   110  344555889999999999988777777888888899999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHH-HH
Q 015348          238 SVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVM-FF  316 (408)
Q Consensus       238 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  316 (408)
                      ...|.......+.+.+...+.|+++||+|.+|.+......++++...........    +............+..++ ..
T Consensus       254 ~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~l~l~~~~G  329 (417)
T COG2223         254 VTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGF----GHGGSFVVFVAVFLALFVFAG  329 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccc----ccCcchHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999988888777776654432211100    000111111111111111 11


Q ss_pred             HhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          317 FKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       317 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      ...-....++..+.| ++.|.+.|+....+++|+..-|...|...+..|
T Consensus       330 ~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg  377 (417)
T COG2223         330 LGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG  377 (417)
T ss_pred             cCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcc
Confidence            222233445555555 478999999999999999999999999999887

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.94  E-value=1.9e-26  Score=211.14  Aligned_cols=318  Identities=12%  Similarity=0.069  Sum_probs=216.7

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      .++++++|+|+.+.+++.+...+...+ ++++|+++||     +|||+.+..+.++..++.+++.+.+   .+++.+++.
T Consensus        26 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~   97 (366)
T TIGR00886        26 QMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-----FGPRYTTTLSLLLLAIPCLWAGLAV---QSYSVLLLL   97 (366)
T ss_pred             HHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHH
Confidence            358899999999999999999988777 9999999999     9999999999999999988887754   168888999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh----------cCChhh
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID----------RFSPPS  153 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~----------~~g~~~  153 (408)
                      |++.|++.+.. +...+++.|+.|+++         |++.+++.....++|..+++.+++.+..          ..+||+
T Consensus        98 ~~~~g~~~~~~-~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~  167 (366)
T TIGR00886        98 RLFIGIAGGSF-ASCMPWISFFFPKKI---------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGW  167 (366)
T ss_pred             HHHHHHhchhh-HhHHHHHHHhcCHhh---------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence            99999987765 445688999988754         8999998888888888888877776654          348999


Q ss_pred             HH-HHHHHHHHHHHHH-hhhcccccccCCCCCcch-------hHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccce
Q 015348          154 MF-LFFGLLVVLQFFI-TIAVRESALKLPKSQSNV-------GIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGT  224 (408)
Q Consensus       154 ~f-~i~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (408)
                      .| ...++...+..+. ..+.+|++++++++++.+       ..++..++.++.+++|.++...+..+............
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (366)
T TIGR00886       168 AFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSI  247 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence            99 4445444443333 334555443221111100       01112224556688888777666555534333344455


Q ss_pred             eEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCc-eEe
Q 015348          225 MFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPD-SLY  303 (408)
Q Consensus       225 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  303 (408)
                      .+.|..+.+|+++.+.+.......+..+++.++.+++.||+++|+....+..............        ..++ ...
T Consensus       248 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  319 (366)
T TIGR00886       248 FAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLG--------LVSPLSLA  319 (366)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhc--------CCCcchHH
Confidence            6667777789999999988888889999999999999999999887766655444433222110        0000 111


Q ss_pred             ehhhhHHHHHHHHHhh-hhHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 015348          304 VLIFSSLLEVMFFFKI-LPFSVYIAQVCPPGCEGSIMAFVMSAVALA  349 (408)
Q Consensus       304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg  349 (408)
                      .............+.. .+......+..| +++|+++|+.++..++|
T Consensus       320 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       320 VFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            1111122222222222 233566677776 68999999998887765

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.94  E-value=4.7e-25  Score=200.69  Aligned_cols=333  Identities=17%  Similarity=0.175  Sum_probs=234.3

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      ++.|+ ++.|+|++|+|.+.+...+..++ +|++|.++||.    ..+|+.+.+..++.++........+    +++.++
T Consensus        25 ~~~~L-~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~----~~~~~~l~~~~l~~~~~~~~~~~~~----~f~~~~   95 (400)
T PF03825_consen   25 LPLYL-ESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRF----GSAKRILALLSLLSALALLLLAFSS----SFWWLF   95 (400)
T ss_pred             HHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hhHHHHHHHHHHHHHHHHHHHHHhc----cHHHHH
Confidence            35677 56789999999999999977777 88999999992    3577888787777777766666666    888888


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHH-HHHHhhcCC---hhhHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLL-VGFAIDRFS---PPSMFLF  157 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l-~~~l~~~~g---~~~~f~i  157 (408)
                      ...++..+......+..+++..+..++++  +     +.|+...    .+++|.+++... ++.+....+   ....+++
T Consensus        96 ~~~~l~~~~~~p~~pl~dsi~~~~~~~~~--~-----~YG~iRl----wGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i  164 (400)
T PF03825_consen   96 VIMLLFSFFFSPTMPLSDSIALSYLGDRG--K-----DYGRIRL----WGSIGFIVAALAFGGLLGGYLGISGTSLIFYI  164 (400)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHccccc--C-----CCCcchh----hhhHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence            88888888888888888899888887543  2     4565555    777888777544 333333333   2345666


Q ss_pred             HHHHHHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccC-CC
Q 015348          158 FGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLK-IR  236 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~  236 (408)
                      .+...++.....+.+|+.+++++++++  ..+...++.++++|||++...++..++........+...+.|.++ .| .+
T Consensus       165 ~~~~~~ll~~~~l~lp~~~~~~~~~~~--~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~-~gg~~  241 (400)
T PF03825_consen  165 AAILSLLLAGFALFLPKTPPKRSAKES--VKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQE-LGGYS  241 (400)
T ss_pred             HHHHHHHHHHHHHhCCCCccccccCCC--cccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccch
Confidence            665555555555567776532222111  111223344567999998888777777555555555555555444 55 77


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeeh----hhhHHHH
Q 015348          237 SSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVL----IFSSLLE  312 (408)
Q Consensus       237 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  312 (408)
                      ....|...++..+++++.....+++.+|++.++++.++.+..++=..+...          .+++.+..    ....+..
T Consensus       242 ~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~----------~~~~~~~~~~~~~l~q~lh  311 (400)
T PF03825_consen  242 GSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAY----------FSDPWPFIVALQLLGQLLH  311 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH----------hcCCcHHHHHHHHHHHhhh
Confidence            788888888999999999999999999999999998887776665444221          11121121    1223346


Q ss_pred             HHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCC
Q 015348          313 VMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSA-VALAFIVSGYLGVALASYTGVTG  368 (408)
Q Consensus       313 ~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~-~~lg~~ig~~~~g~l~~~~g~~~  368 (408)
                      +...+..... ..++.+.+|++.|++++|+++.. ..+|..+|..++|++.|+.|.+.
T Consensus       312 G~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~  369 (400)
T PF03825_consen  312 GLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG  369 (400)
T ss_pred             hHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence            6665555555 88999999999999999999887 56999999999999999998654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.94  E-value=1e-25  Score=211.44  Aligned_cols=345  Identities=11%  Similarity=0.095  Sum_probs=230.2

Q ss_pred             hhhhhhhc--cCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHH
Q 015348            3 VNFFLKDS--LNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFT   79 (408)
Q Consensus         3 ~~~~l~~~--l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (408)
                      ++.|++++  +|.|+.+.+.+.+.......+ ++++|+++||.    +|||+.+.++.++.+++.+++++.+    +++.
T Consensus        33 L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~----~G~~~~l~~~~~~~~~g~~~~~~~~----~~~~  104 (475)
T TIGR00924        33 LAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRV----WGTKKTMVLGGIVLMLGHFMLAMSI----YPDL  104 (475)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhh----cchHHHHHHHHHHHHHHHHHHHhcc----cHhH
Confidence            46788777  999999999999999865555 89999999992    4999999999999999999988887    7888


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 015348           80 MSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFG  159 (408)
Q Consensus        80 ~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~  159 (408)
                      +++.+.+.|++.+...+...+++.|..|+++. +     +|++..++.+...++|.++||.+++++.++.||++.|.+.+
T Consensus       105 ~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~-~-----~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~  178 (475)
T TIGR00924       105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDM-P-----RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA  178 (475)
T ss_pred             HHHHHHHHHhccccccCCHHHHHHHhcCCCCc-c-----cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            88999999999999999998999999987542 2     48888999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhhhcccc----cccCCCCCcch-hHHHHH-----------H----------------------------H-
Q 015348          160 LLVVLQFFITIAVRES----ALKLPKSQSNV-GIRAQL-----------S----------------------------E-  194 (408)
Q Consensus       160 ~~~~~~~~~~~~~~e~----~~~~~~~~~~~-~~~~~~-----------~----------------------------~-  194 (408)
                      +..++..+...+.+++    ++++++.++++ +.....           +                            . 
T Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (475)
T TIGR00924       179 VGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLA  258 (475)
T ss_pred             HHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655554444333322    11111100000 000000           0                            0 


Q ss_pred             ----HHHhcccc--hhHHHHHHHHhhhcccccccceeEEEEEeccCCChh----hHHHHHHHHHHHHHHHHHHHH----H
Q 015348          195 ----LSAALRKP--EIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSS----VLGISKVFGQAAMLLWGVIYN----S  260 (408)
Q Consensus       195 ----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~g~~~~~~~~~~~~~~~~~~----~  260 (408)
                          ..+..|+|  .+..+.+...+.+.......+..+.+..+..+.+..    ..+++.+++.+..++..++..    +
T Consensus       259 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~  338 (475)
T TIGR00924       259 FKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTR  338 (475)
T ss_pred             HhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence                00000111  112222222233444334444344443333332211    256777777777777766644    4


Q ss_pred             hhcc-CCCceeh--HHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhH
Q 015348          261 GLKS-VSPRKLI--SAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEG  336 (408)
Q Consensus       261 l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g  336 (408)
                      +.|| .+.+...  ..+.++.+++...........+  .+.+.+.++++...+..++++....|. +++..+.+|++.||
T Consensus       339 l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~--~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g  416 (475)
T TIGR00924       339 LGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFAD--AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMG  416 (475)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence            5554 3333333  4555555554433221100000  112345556777888889999988899 99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          337 SIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       337 ~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                      +++|+......+|..+++.+.....+.
T Consensus       417 ~~~g~~~l~~~~g~~l~~~~~~~~~~~  443 (475)
T TIGR00924       417 QMLGMWFLAQAMGSLLGGYLATFGAVP  443 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999988888888888887766554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.94  E-value=2.5e-25  Score=208.89  Aligned_cols=341  Identities=13%  Similarity=0.125  Sum_probs=223.4

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhc-ccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHH-HH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIF-TM   80 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~   80 (408)
                      +..|+++++|.++++.+++.+.+. ..+...+++|+++||+    +||||.++.+.++..++.+.+++++    +.. .+
T Consensus        37 l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~----~G~r~~~~~g~~~~~~g~~~~~~~~----~~~~ll  108 (489)
T PRK10207         37 LAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHL----LGTKRTIVLGAIVLAIGYFMTGMSL----LKPDLI  108 (489)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhc----cchHHHHHHHHHHHHHHHHHHHHhc----cchhHH
Confidence            456888999999999999988887 5666688999999983    6999999999999999999998876    433 35


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGL  160 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~  160 (408)
                      ++.|.+++++.+...+...+++.|.+|+++  +     +|++..++.+.+.++|..+||.+++++.++.|||+.|++.++
T Consensus       109 ~~~~~l~~ig~g~~~~~~~~li~~~~p~~~--~-----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        109 FIALGTIAVGNGLFKANPASLLSKCYPPKD--P-----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             HHHHHHHHhccccccCCHHHHHHHhcCCCc--h-----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            578999999999999888999999998765  2     478889999999999999999999999999999999999765


Q ss_pred             HHHHHHHHhhhcccc----cccCCCCC-cchhH-----------------HH--HH-----------------H---HHH
Q 015348          161 LVVLQFFITIAVRES----ALKLPKSQ-SNVGI-----------------RA--QL-----------------S---ELS  196 (408)
Q Consensus       161 ~~~~~~~~~~~~~e~----~~~~~~~~-~~~~~-----------------~~--~~-----------------~---~~~  196 (408)
                      ..++..+.....++.    ++++++++ +....                 .+  ..                 .   +..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~  261 (489)
T PRK10207        182 GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLD  261 (489)
T ss_pred             HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            444443333333321    11111100 00000                 00  00                 0   000


Q ss_pred             HhcccchhHHHHHH--HHhhhcccccccceeEEEEEecc-----CCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCce
Q 015348          197 AALRKPEIMYSVAW--FAASYSIIPVLTGTMFFYQTQNL-----KIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRK  269 (408)
Q Consensus       197 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~  269 (408)
                      +..|+|.+....++  ..+.+..........+.+..+..     |+.. ....+.....+..++..++.+++.||.++|+
T Consensus       262 ~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~  340 (489)
T PRK10207        262 KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKG  340 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCC
Confidence            12333433322211  11122322223233333332211     2211 1234445555666677777888999988776


Q ss_pred             e-------hHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHH
Q 015348          270 L-------ISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAF  341 (408)
Q Consensus       270 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~  341 (408)
                      .       +..+.++.++..+........... .....+.++++...+..++++....|. .+.+.+.+|++.+|.++|+
T Consensus       341 ~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~-~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~  419 (489)
T PRK10207        341 KDLSMPMKFTLGMFLCSLGFLTAAAAGMWFAD-AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGM  419 (489)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHH
Confidence            3       555655555443221100000000 011122345566777888998888888 9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 015348          342 VMSAVALAFIVSGYLGVAL  360 (408)
Q Consensus       342 ~~~~~~lg~~ig~~~~g~l  360 (408)
                      .+...++|+.+|..++...
T Consensus       420 ~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        420 WFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999998888777655

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.94  E-value=7.9e-29  Score=217.34  Aligned_cols=341  Identities=16%  Similarity=0.096  Sum_probs=224.1

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      .-.++++|+++++.|++.+...+.+.+ +|+.|+++||     ++||+++.+|..++.++.++.+++.    .+|++.++
T Consensus        57 ~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-----yNR~~v~~vG~~iW~~Av~~~~fs~----~Fwq~~l~  127 (493)
T KOG1330|consen   57 KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-----YNRKRVIAVGIFIWTLAVFASGFSN----HFWQVLLC  127 (493)
T ss_pred             HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-----cCcceEEeeHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence            346778999999999999999987776 9999999999     9999999999999999999999998    99999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhhHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS-PPSMFLFFGLLV  162 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g-~~~~f~i~~~~~  162 (408)
                      |.+.|+|.+.+.+..+++++|.+|+++         |++..++++.+..+|..+|.+.+..+.+..+ ||+.|+..+++.
T Consensus       128 R~~vGiGeAs~~~ia~s~IaD~f~~~~---------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~  198 (493)
T KOG1330|consen  128 RGFVGIGEASYSPIAPSLIADSFPDDK---------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLG  198 (493)
T ss_pred             HHHhccchhhhcccchhHhhhcCcchh---------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHH
Confidence            999999999999999999999999864         9999999999999999999999998888766 999999999999


Q ss_pred             HHHHHHhh-hcccccccCCCCCcc-----hhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeE---EEEEecc
Q 015348          163 VLQFFITI-AVRESALKLPKSQSN-----VGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMF---FYQTQNL  233 (408)
Q Consensus       163 ~~~~~~~~-~~~e~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  233 (408)
                      ++..++.+ +++||++...++.++     .+....+|+++...|+|.+....+-..........+..+.|   ++..+..
T Consensus       199 vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~  278 (493)
T KOG1330|consen  199 VIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELI  278 (493)
T ss_pred             HHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHh
Confidence            98876655 477776533222111     12344567776667766544333222221222222222222   2222224


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhH
Q 015348          234 KIRSSVLGISKVFGQAAMLLWGVIYNSGLKS----VSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSS  309 (408)
Q Consensus       234 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
                      |++....-++..+...++.+|..+.|.++||    +.+........+..+........+...... ......+..+++..
T Consensus       279 ~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~-~~~~s~~~~~il~~  357 (493)
T KOG1330|consen  279 GFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA-FTSSSMIFGLILFL  357 (493)
T ss_pred             CCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence            4444444444444444445555444444444    544334444433333332211111000000 00111111111111


Q ss_pred             HHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q 015348          310 LLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAF-IVSGYLGVALASYT  364 (408)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~-~ig~~~~g~l~~~~  364 (408)
                      +........+.+..-+..+++|+++|.+++++...+..+-+ .-+|.+.|.+.|+.
T Consensus       358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             HHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence            11111112222334567788999999999999988876544 55556999999876

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.94  E-value=4.8e-24  Score=197.63  Aligned_cols=370  Identities=12%  Similarity=0.173  Sum_probs=257.8

Q ss_pred             HHHHHHHhhc-ccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH
Q 015348           17 TLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAE   95 (408)
Q Consensus        17 ~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   95 (408)
                      ..++..++.. +..++.|+.|.++|+    +.+||+++.....+..++..++.+.+  ..+++...+..++..++.....
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~----~~~Rk~~l~~~~~~~~~~~~~l~~v~--~~~~~~~~~l~iia~v~~~~~~  144 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADY----GGRRKRFLLIFTLLGVLATALLWFVS--PGQWWLALVLFIIANVGYEASN  144 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcc----cccchHHHHHHHHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHHHHHHH
Confidence            3455566655 445559999999999    24566666777777777777777754  2366777788889999999999


Q ss_pred             hhHHHHHHhhccCCCccchhhc-----------------cCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--------CC
Q 015348           96 VANDALVAEMAKQPMTSSKKAQ-----------------SSSGELQSFVWMSSSMGGVLGNLLVGFAIDR--------FS  150 (408)
Q Consensus        96 ~~~~a~i~~~~~~~~~~~~~~~-----------------~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~--------~g  150 (408)
                      +..+++++|..+++++.++..+                 .+|++..+.-...+++|.++.-.+.-.+...        .+
T Consensus       145 vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~  224 (477)
T PF11700_consen  145 VFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWA  224 (477)
T ss_pred             HHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchh
Confidence            9999999999998763110000                 0248999988888999998887766555322        23


Q ss_pred             hhhHHHHHHHHHHHHHHHhhh-cccccccCCCCCcc----hhHHHHHHHHHHhcccchhHHHHHHHHhhhccccccccee
Q 015348          151 PPSMFLFFGLLVVLQFFITIA-VRESALKLPKSQSN----VGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTM  225 (408)
Q Consensus       151 ~~~~f~i~~~~~~~~~~~~~~-~~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (408)
                      .|..+.+.++..++..+..++ +||++.++..++..    ...++..+.+++..|+|+...+++..++..-.........
T Consensus       225 ~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~  304 (477)
T PF11700_consen  225 IRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFA  304 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588888888888777666554 78776532222222    2234444445555677888888887777454555555555


Q ss_pred             EEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCc--eehHHHHHHHHHHHHHhHhhhcccccccCcCceEe
Q 015348          226 FFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPR--KLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLY  303 (408)
Q Consensus       226 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      ..|..+++|++..+...+..+..+.+++|+++.+++.||+|.|  +++..+.+...+..+...+  .......+..+. +
T Consensus       305 ~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~--G~~~~~~g~~~~-~  381 (477)
T PF11700_consen  305 GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLF--GFWPSFFGLKSP-W  381 (477)
T ss_pred             HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHH--HhhhcccCcccH-H
Confidence            6677788999999999999999999999999999999999998  7776666555444333221  000011223222 2


Q ss_pred             ehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHH
Q 015348          304 VLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQA  382 (408)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  382 (408)
                      .+....+..|+..+...+. .++.+|+.|+++++..+|++......+..+||.+.|.+.+..|..+       ..+....
T Consensus       382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r-------~g~~~l~  454 (477)
T PF11700_consen  382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQR-------YGFLFLL  454 (477)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-------hHHHHHH
Confidence            4455566677777766676 8999999999999999999999999999999999999999987432       2233444


Q ss_pred             hhhhhhhhhhhccCCCCCCc
Q 015348          383 VCTILPLYWSYFMPDGVKSK  402 (408)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~  402 (408)
                      +..++++.++.+++.++.++
T Consensus       455 ~lf~~gl~ll~~v~~~~g~~  474 (477)
T PF11700_consen  455 VLFLIGLILLFFVDVEKGRE  474 (477)
T ss_pred             HHHHHHHHHHhhccchhhhh
Confidence            45555666666666655433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=6.6e-26  Score=208.53  Aligned_cols=354  Identities=15%  Similarity=0.124  Sum_probs=257.4

Q ss_pred             hhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 015348            8 KDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLL   86 (408)
Q Consensus         8 ~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   86 (408)
                      +++++.|+.|-+++.+....++++ +.+.|+++||     +|-|+++..+.++.+++.++..++.  ..+++.+++.|++
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-----~G~r~v~~~~~~~sa~~t~l~P~aa--~~~~~~~~~~R~l  137 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-----FGARRVFFISGLISALLTLLTPLAA--SIGFYLLLVLRFL  137 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-----cCchHHHHHHHHHHHHHHHHHHHHH--HhcchhhHHHHHH
Confidence            457899999999999999999999 8899999999     9999999999999999999988766  2355678999999


Q ss_pred             HHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-CChhhHHHHHHHHHHHH
Q 015348           87 SNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR-FSPPSMFLFFGLLVVLQ  165 (408)
Q Consensus        87 ~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~-~g~~~~f~i~~~~~~~~  165 (408)
                      +|++.+...++...+...|.|.+|         |++..++...+..+|.+++.+++|++.+. +||+..|++.++..++.
T Consensus       138 qGl~~g~~~pa~~~i~~~W~P~~E---------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~  208 (466)
T KOG2532|consen  138 QGLGQGVLFPAIGSILAKWAPPNE---------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIW  208 (466)
T ss_pred             hHHHHhHHHhhhhceeeeECCHHH---------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHH
Confidence            999999999999999999999875         99999999999999999999999999998 99999999999999999


Q ss_pred             HHHhhh-cccccccCCCCCcch-----------hHHH-HHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEec
Q 015348          166 FFITIA-VRESALKLPKSQSNV-----------GIRA-QLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQN  232 (408)
Q Consensus       166 ~~~~~~-~~e~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (408)
                      .+++++ ..|+|.+.+.-.++|           ..++ ..-..+++++++.+|...+..+.............|.|+.+.
T Consensus       209 ~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~V  288 (466)
T KOG2532|consen  209 FILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEV  288 (466)
T ss_pred             HHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            887765 555544322111100           0000 011355669999999999988887777777888899999999


Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCc--------eeh-HHHHHHHHHHHHHhHhhhcccccccCcCceEe
Q 015348          233 LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPR--------KLI-SAIQAMMAVFMISDVLFVKGVYREMGVPDSLY  303 (408)
Q Consensus       233 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      +|+|..+.|+..++..+.+.+..++.|.++||...|        |.+ .++....++..+...+        ..-...  
T Consensus       289 L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~--------~~~~~~--  358 (466)
T KOG2532|consen  289 LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAF--------TSDEHR--  358 (466)
T ss_pred             hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeee--------cCCCcc--
Confidence            999999999999999999999999999999987653        111 1111111111111000        011111  


Q ss_pred             ehhhhHHHHHHHHHhhhhH--HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHH
Q 015348          304 VLIFSSLLEVMFFFKILPF--SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQ  381 (408)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~  381 (408)
                      ......+....+..+....  ..-..+. .|++.+.++|+.+....+++.++|.+.|.+.+ -+ +   ......++.+.
T Consensus       359 ~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~-t---~~eW~~VF~i~  432 (466)
T KOG2532|consen  359 LLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN-T---REEWRIVFLIA  432 (466)
T ss_pred             hHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC-C---HHHHHHHHHHH
Confidence            1111122222222212222  2222222 45889999999999999999999999998885 11 2   22334555555


Q ss_pred             Hhhhhhhhhhhh
Q 015348          382 AVCTILPLYWSY  393 (408)
Q Consensus       382 ~~~~~~~~~~~~  393 (408)
                      +.+.+++...+.
T Consensus       433 a~i~~~~~i~f~  444 (466)
T KOG2532|consen  433 AGILIVGNIIFL  444 (466)
T ss_pred             HHHHHHhchhee
Confidence            555554444433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.94  E-value=7.5e-24  Score=195.02  Aligned_cols=383  Identities=14%  Similarity=0.137  Sum_probs=245.4

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhccccc-ccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCc--------
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMV-GKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSS--------   74 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~-~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~--------   74 (408)
                      +.|+ +++|.++.+.+++..+..+... .+|+.|.++||+++|..+||++++.+.....++..++++++...        
T Consensus        28 ~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~  106 (477)
T TIGR01301        28 TPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLD  106 (477)
T ss_pred             HHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccccc
Confidence            4455 7899999999999998885544 49999999998877766666666667777777777777765100        


Q ss_pred             --c---hHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHH--hh
Q 015348           75 --I---SIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFA--ID  147 (408)
Q Consensus        75 --~---~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l--~~  147 (408)
                        .   ..+.+++...+..++.....++..++++|..|+++|       +++.++++.+...++|.++|+.++++.  .+
T Consensus       107 ~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~-------~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~  179 (477)
T TIGR01301       107 KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR-------RTRIANAYFSFFMAIGNVLGYAAGAYSGLYK  179 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence              0   013445555566778888888888999999998762       357889999999999999999999875  22


Q ss_pred             cC-------------ChhhHHHHHHHHHHHHHHHhhh-cccccccCCCC--------CcchhHHHHHHHHHHhccc--ch
Q 015348          148 RF-------------SPPSMFLFFGLLVVLQFFITIA-VRESALKLPKS--------QSNVGIRAQLSELSAALRK--PE  203 (408)
Q Consensus       148 ~~-------------g~~~~f~i~~~~~~~~~~~~~~-~~e~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--~~  203 (408)
                      .+             +.|..|.+.++..++..+...+ .||++..++++        .++.+.++.++++++.+|+  |.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP~~  259 (477)
T TIGR01301       180 IFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLPRP  259 (477)
T ss_pred             hcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCCHH
Confidence            21             5788999988888877666554 88865421111        1111122334444444443  66


Q ss_pred             hHHHHHHHHhhhcccccccceeEEEEEe-ccCCCh------hhH---H-HHHHHHHHHHHHHHHHHHHhhccCCC-ceeh
Q 015348          204 IMYSVAWFAASYSIIPVLTGTMFFYQTQ-NLKIRS------SVL---G-ISKVFGQAAMLLWGVIYNSGLKSVSP-RKLI  271 (408)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~------~~~---g-~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~  271 (408)
                      ++.+++..++.|.....+......|..+ .++-++      ++.   | +......+...+.+++..++.+|+|+ |+..
T Consensus       260 m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~  339 (477)
T TIGR01301       260 VWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLW  339 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence            7888888888776544443333333222 122211      111   2 33455566666777888999999986 4555


Q ss_pred             HHHHHHHHHHHHHhHhhhccccc--c-------cCcCce-EeehhhhHHHHHHHHHhhhhH-HHHHHHhcCC--chhHHH
Q 015348          272 SAIQAMMAVFMISDVLFVKGVYR--E-------MGVPDS-LYVLIFSSLLEVMFFFKILPF-SVYIAQVCPP--GCEGSI  338 (408)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~--~~~g~~  338 (408)
                      ..+.++.+++.....+.....++  .       +..+.. .+.........|+.......+ ++++++..|+  +..|..
T Consensus       340 ~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~  419 (477)
T TIGR01301       340 GIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLS  419 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcch
Confidence            66666666655544332210000  0       000000 123334445556666666666 8888998885  566999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHhhhhh-hhhhhhccCCCCC
Q 015348          339 MAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTIL-PLYWSYFMPDGVK  400 (408)
Q Consensus       339 ~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  400 (408)
                      +|+.|.+..+.+.+.....|.+.+.+|.+.      ...+.++++..++ ++...+.+|+.++
T Consensus       420 mgilN~~I~lpQii~sl~~g~~~~~~g~~~------~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       420 MGVLNLAIVIPQIIVSLGSGPWDQLFGGGN------LPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHcCCCC------eeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999888887432      1233444444443 3444567787653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.93  E-value=7.1e-25  Score=187.36  Aligned_cols=329  Identities=16%  Similarity=0.144  Sum_probs=214.5

Q ss_pred             CCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHH
Q 015348           13 VDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGA   91 (408)
Q Consensus        13 ~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   91 (408)
                      .+..-.|.+.+.+.+..++ +|.||.++||     +|||+++..+++..+++..+.+.+.    |+..++..|++.|+..
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-----yGRkpvll~c~~~va~s~ll~~~S~----~F~afv~aR~l~Gi~k  135 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDR-----YGRKPVLLACLIGVALSYLLWALSR----NFAAFVLARFLGGIFK  135 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhh-----hCchHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhcc
Confidence            3556778888888876666 9999999999     9999999999999999999999998    9966677799999999


Q ss_pred             HHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh---cCChhhHHHH-H---HHHHHH
Q 015348           92 SIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID---RFSPPSMFLF-F---GLLVVL  164 (408)
Q Consensus        92 ~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~---~~g~~~~f~i-~---~~~~~~  164 (408)
                      +...+.. +++.|+.++++         |++.++.+....++|.++||.+||++..   ..|- .+|.. +   .+....
T Consensus       136 gnl~v~r-AiisdV~sek~---------r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~-~p~alP~~~v~i~a~~  204 (451)
T KOG2615|consen  136 GNLSVIR-AIISDVVSEKY---------RPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGS-YPFALPCLLVFILAAG  204 (451)
T ss_pred             CchHHHH-HHHHhhcChhh---------ccceeeeeehhhhcchhhcchhhhHHHhhHhhhcc-CchHHHHHHHHHHHHH
Confidence            9998887 99999999864         9999999999999999999999999987   2232 12222 1   112112


Q ss_pred             -HHHHhhhcccccccCCCCCcchhHH------HH-----HHHHHHhcccchhHH------HH-HHHHhhhccccccccee
Q 015348          165 -QFFITIAVRESALKLPKSQSNVGIR------AQ-----LSELSAALRKPEIMY------SV-AWFAASYSIIPVLTGTM  225 (408)
Q Consensus       165 -~~~~~~~~~e~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~  225 (408)
                       .....+++||+-+.+++++++.+..      +.     ...-...+||+....      .+ +-.++....+.......
T Consensus       205 ~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~  284 (451)
T KOG2615|consen  205 DVTFFPWFLPETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTV  284 (451)
T ss_pred             HHHHHHHhCCccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence             1234556888744333221111010      11     111122345543222      11 11112122222223333


Q ss_pred             EEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCC--CceehHHHHHHHHHHHHHhHhhhcccccccCcCceEe
Q 015348          226 FFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVS--PRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLY  303 (408)
Q Consensus       226 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      ..+..+.+|+++.+.|-+....++.+.+......+..+|..  .+-.+......+.-..++           .+......
T Consensus       285 ~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~ll-----------ls~~~~~~  353 (451)
T KOG2615|consen  285 LFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLL-----------LSLARTPV  353 (451)
T ss_pred             HHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH-----------Hhccccch
Confidence            33334568999999998888888877777766666666654  222222222211111111           11111112


Q ss_pred             ehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 015348          304 VLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFS  372 (408)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~  372 (408)
                      .+........+......+. ..++.+..|+++||++.|+..+.+.++.++||.++|.+..+..-....+.
T Consensus       354 ~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~  423 (451)
T KOG2615|consen  354 VLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYI  423 (451)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceee
Confidence            3444445555555545555 88899999999999999999999999999999999999887654444443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.93  E-value=1.7e-22  Score=177.04  Aligned_cols=373  Identities=17%  Similarity=0.118  Sum_probs=273.0

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccccchheeeccccc-ccCCcchhHHHHHHHHHHHHHHHHHHhcc---C-------c
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVY-ISGQHRVPYIAIGAFLQAVSWLAIAILSQ---S-------S   74 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~~~~~G~l~Dr~~-~~~~grk~~l~~~~~~~~~~~~~~~~~~~---~-------~   74 (408)
                      -+..|++++..-.+...++..+.....+.+|+.||+-| ..|++|.|++..|......+..++.+...   +       +
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            35679999999999999998877777999999999998 78889999999999888877666554321   1       1


Q ss_pred             chHH--HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChh
Q 015348           75 ISIF--TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPP  152 (408)
Q Consensus        75 ~~~~--~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~  152 (408)
                      ...+  .......+.|+|.+...++..+++.|..++++         |+++.++.+.+.-+|.+++..+.+.+.+.++..
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~---------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~  155 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER---------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE  155 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh---------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence            1222  34556788899999999999999999999864         999999999999999999999999999887765


Q ss_pred             hHHHHHHHHHHHHHH---HhhhcccccccCCC---CCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeE
Q 015348          153 SMFLFFGLLVVLQFF---ITIAVRESALKLPK---SQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMF  226 (408)
Q Consensus       153 ~~f~i~~~~~~~~~~---~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (408)
                      ...-+.....++...   +..+-.|++.++..   ++++.+.++.++++   ..+|+..++..+.++.......-....-
T Consensus       156 rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~---~~~~~a~~f~~fl~l~t~a~~~QD~iLE  232 (403)
T PF03209_consen  156 RLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQV---WASPQARRFFVFLFLGTLAFFMQDVILE  232 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHH---HhCCChhHHHHHHHHHHHHHHhhHHHcC
Confidence            554444444333332   22333344333222   22334455555554   6888888888888876666666677788


Q ss_pred             EEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhc-cCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeeh
Q 015348          227 FYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLK-SVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVL  305 (408)
Q Consensus       227 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (408)
                      ||--+.+|++..+...++.....+.+++....+++.. |.++++.-.+++.....+..+...        -+...+.+.+
T Consensus       233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~--------a~~~~~~~~~  304 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL--------AGPLGSPWLF  304 (403)
T ss_pred             CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH--------HHhcccchHH
Confidence            8999999999999999999999999999999988876 566666666666665555443222        1222333455


Q ss_pred             hhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCchHHHHHHHH
Q 015348          306 IFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTG--DDFSGLPLALIIQA  382 (408)
Q Consensus       306 ~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~--~~~~~~~~~~~~~~  382 (408)
                      -...+..|++.+.+... .+...+.+++++.|...|.....+.++..++..++|.+.|....-.  +....+...+.+-+
T Consensus       305 ~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa  384 (403)
T PF03209_consen  305 RPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEA  384 (403)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence            56667777777666555 7788899999999999999999999999999999999998653221  23445566666777


Q ss_pred             hhhhhhhhhhhccCCC
Q 015348          383 VCTILPLYWSYFMPDG  398 (408)
Q Consensus       383 ~~~~~~~~~~~~~~~~  398 (408)
                      +..+.++.....+.++
T Consensus       385 ~ll~~a~~ll~~l~~~  400 (403)
T PF03209_consen  385 VLLLAALVLLGRLDRR  400 (403)
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            7777766666655443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.92  E-value=5.5e-23  Score=194.17  Aligned_cols=336  Identities=15%  Similarity=0.087  Sum_probs=207.7

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhc-ccccccchheeecccccccCC-cchhHHHHHHHHHHHHHHHHHHhccCcchHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQ-HRVPYIAIGAFLQAVSWLAIAILSQSSISIFTM   80 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~-grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (408)
                      +..|+++++|+|+++.+.+.+... ..+...+++|+++||     + |||+.+..+.++..++..++.+++   .+.+.+
T Consensus        44 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr-----~~G~r~~~~~g~~~~~ig~~l~~~~~---~~~~~l  115 (500)
T PRK09584         44 MAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDK-----VLGTKRVIMLGAIVLAIGYALVAWSG---HDAGIV  115 (500)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhc---ccHHHH
Confidence            457888999999999888887765 334446789999999     7 999999999999999988888764   145667


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGL  160 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~  160 (408)
                      .+.+.+.|++.+...+...+++.|+.|+++  +     +|++..++.+.+.++|..+||.+++++.++.|||+.|.+.++
T Consensus       116 ~~~~~l~gig~g~~~~~~~~l~~~~f~~~~--~-----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i  188 (500)
T PRK09584        116 YMGMATIAVGNGLFKANPSSLLSTCYEKDD--P-----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV  188 (500)
T ss_pred             HHHHHHHHHhhhcccCCHHHHHHHhcCCCc--h-----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            788999999999988888899999998654  2     466678888999999999999999999999999999999876


Q ss_pred             HHHHHHHHhh----hcccccccCCCC-CcchhH-H-------------------HH----------------HHHH---H
Q 015348          161 LVVLQFFITI----AVRESALKLPKS-QSNVGI-R-------------------AQ----------------LSEL---S  196 (408)
Q Consensus       161 ~~~~~~~~~~----~~~e~~~~~~~~-~~~~~~-~-------------------~~----------------~~~~---~  196 (408)
                      ...+..+...    .++|++++++++ .+..+. .                   +.                .++.   .
T Consensus       189 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (500)
T PRK09584        189 GMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMK  268 (500)
T ss_pred             HHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            5555433222    234432111110 000000 0                   00                0000   0


Q ss_pred             HhcccchhHHHHHHHHhhhcccccccceeEEEEE----ec-----cCCChhhHHHHHHHHHHHHHHH----HHHHHHhhc
Q 015348          197 AALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQT----QN-----LKIRSSVLGISKVFGQAAMLLW----GVIYNSGLK  263 (408)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~g~~~~~~g~~~~~~~~~~~~~----~~~~~~l~~  263 (408)
                      +.-++| .+..+..... ...+.......+.+..    +.     .|+. ...+++..+..+..++.    ...++++.+
T Consensus       269 ~~~~~~-~~~~~~~~~~-~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~n~i~iil~~p~~~~~~~~l~~  345 (500)
T PRK09584        269 GAARRK-MIVAFILMLE-AIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQALNPFWIMIGSPILAAIYNKMGD  345 (500)
T ss_pred             HHHHHH-HHHHHHHHHH-HHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHHhHHHHHHHHHHHHHHHHHhCc
Confidence            011112 2222111111 1111111111111111    11     1211 11334444555444444    444577777


Q ss_pred             cCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHH
Q 015348          264 SVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFV  342 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~  342 (408)
                      |.+..+.+.++.++.++..+...... ......+. .+.++.+...+..++++....|. .+++.+.+|++.||+++|+.
T Consensus       346 r~~~~~~~~~G~~l~~l~f~~l~~~~-~~~~~~~~-vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~  423 (500)
T PRK09584        346 RLPMPHKFAIGMVLCSGAFLVLPLGA-KFANDAGI-VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSW  423 (500)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHH
Confidence            77766777777777776654432211 11000111 12235667778889999999999 99999999999999999966


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 015348          343 MSAVALAFIVSGYLGVALAS  362 (408)
Q Consensus       343 ~~~~~lg~~ig~~~~g~l~~  362 (408)
                      .....    +|+.++|.+.+
T Consensus       424 ~l~~a----~g~~~~g~~~~  439 (500)
T PRK09584        424 FLTTA----GAALIAGYVAN  439 (500)
T ss_pred             HHHHH----HHHHHHHHHHH
Confidence            55544    44455555544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=8.2e-23  Score=177.09  Aligned_cols=331  Identities=15%  Similarity=0.098  Sum_probs=251.0

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      +...+++.+++|..|.+++...+..++.+ +.+.|.+.||     +|+|+-+++|..++++++.+..-+. ...++..++
T Consensus        35 Lip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-----~gyk~gi~lgL~l~avg~~lF~pAa-~~~~y~~FL  108 (422)
T COG0738          35 LIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-----LGYKAGIVLGLLLYAVGAALFWPAA-SSKSYGFFL  108 (422)
T ss_pred             hHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHH
Confidence            34578899999999999999999999888 8999999999     9999999999999999998875222 122788888


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-------------
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR-------------  148 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~-------------  148 (408)
                      ...++.+.|.+..+++.++++....++++         ..+-++..+...++|.++||.+++.++.+             
T Consensus       109 ~~lFila~Gi~~LetaaNp~v~~lg~~~~---------a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~  179 (422)
T COG0738         109 VALFILASGIGLLETAANPYVTLLGKPES---------AAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILA  179 (422)
T ss_pred             HHHHHHHhhhHHHHhccchHHHHhCCchh---------HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHH
Confidence            99999999999999999999999998854         44446677779999999999999988762             


Q ss_pred             ------CChhhHHHHHHHHHHHHHHHhhhcc--cccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhccccc
Q 015348          149 ------FSPPSMFLFFGLLVVLQFFITIAVR--ESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPV  220 (408)
Q Consensus       149 ------~g~~~~f~i~~~~~~~~~~~~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (408)
                            -.++.++...+...++..+.....|  |.++..++..+   .++.  ...+.+|+|.++...+..++.......
T Consensus       180 ~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~---~~~~--~~~~l~~~~~~~~gvl~~FlYVG~Eva  254 (422)
T COG0738         180 IKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGA---SGSA--GLSSLFQNKHLRLGVLAIFLYVGAEVA  254 (422)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccc---cccc--hHHHHHhChHHHHHHHHHHHHHhHHHH
Confidence                  2478888887777666655554433  33322222111   1111  334558999999999999986666677


Q ss_pred             ccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCc
Q 015348          221 LTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPD  300 (408)
Q Consensus       221 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (408)
                      ..++.+.|..+..|.+..+.....+....+.++|.++..++.+|+...|.+........+.++...+           .+
T Consensus       255 ~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l-----------~~  323 (422)
T COG0738         255 IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVAL-----------IG  323 (422)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-----------hc
Confidence            7777777777778999999999999999999999999999999999888887766554444333221           11


Q ss_pred             eEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          301 SLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      . .+........+.......|. .+...+..|+ + .+.-|..-.+...|+.+-|.+.|++.|..|..
T Consensus       324 g-~v~~~~l~~ig~F~simfPTIfslal~~l~~-~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~  388 (422)
T COG0738         324 G-VVALYALFLIGLFNSIMFPTIFSLALKNLGE-H-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQ  388 (422)
T ss_pred             C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCc-c-ccccceeeeeheecchHHHHHHHHHHHhhhhH
Confidence            1 13333455566666777787 8888888883 3 33334455667789999999999999998864

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.91  E-value=5.2e-24  Score=190.07  Aligned_cols=336  Identities=12%  Similarity=0.143  Sum_probs=214.8

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHH--HHHHHHH-HHhccCcchHH-
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQ--AVSWLAI-AILSQSSISIF-   78 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~--~~~~~~~-~~~~~~~~~~~-   78 (408)
                      +.|++++.|+|++|+|.+.++..+..++ +|+.|.++||     .|.||-++......  ..+.... .+.|....|.+ 
T Consensus        31 ~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-----lg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~l  105 (412)
T PF01306_consen   31 PIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-----LGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWL  105 (412)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-----CTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HH
T ss_pred             HHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888999999999999999866655 9999999999     77665544332221  1122221 12221111332 


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHH
Q 015348           79 TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFF  158 (408)
Q Consensus        79 ~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~  158 (408)
                      ..++.-+..++......+..+++.-+..++++-       +.|++..    .+++|.+++..++|.+.+ .+.+..||+.
T Consensus       106 g~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~f-------eYG~~R~----wGSig~ai~s~~~G~L~~-i~p~~~fwi~  173 (412)
T PF01306_consen  106 GAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGF-------EYGRARM----WGSIGFAIASLLAGILFN-INPNIIFWIA  173 (412)
T ss_dssp             HHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS--------HHHHHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccchHHHHHHHHHHHHhcC-------CcchHHH----HhhHHHHHHHHHhheeee-eCccHHHHHH
Confidence            223333334555555566677777777665431       3555444    999999999999999987 4778888987


Q ss_pred             HHHHHHHHHHhhhcc-cccccCC--CCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEe---c
Q 015348          159 GLLVVLQFFITIAVR-ESALKLP--KSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQ---N  232 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~-e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  232 (408)
                      ....++..++.++.+ +.+++.+  +.++.++.+...++..+.+|+|++|.+.++..........+....+.|...   .
T Consensus       174 s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~  253 (412)
T PF01306_consen  174 SAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQS  253 (412)
T ss_dssp             HHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            766665555544443 3222211  111112233345777788999999998887666444444433323333322   2


Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHH
Q 015348          233 LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLE  312 (408)
Q Consensus       233 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
                      .+.+.+..|.+.+...+..++...+.+++.+|+|.|+.+.++..++.+=...           .+..++.+.+...-...
T Consensus       254 ~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~-----------~~~~~~~~~i~~~klLH  322 (412)
T PF01306_consen  254 AGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIG-----------SGFATNPWVISLIKLLH  322 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-----------HHT--SHHHHHHHHHHH
T ss_pred             cccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHH-----------HhhhcchHHHHHHHHHH
Confidence            3445677899999999999999999999999999999998887776665444           22234444555555555


Q ss_pred             HHHHH-hhhhHHHHHHHhcCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          313 VMFFF-KILPFSVYIAQVCPPGCEGSIMAFV-MSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       313 ~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      +.... ...+..-++++..|++..++.+.+. +...+++..+.+.++|.+.|+.|.+
T Consensus       323 ~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~  379 (412)
T PF01306_consen  323 ALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQ  379 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcH
Confidence            55543 3344477999999999999999985 5678899999999999999999864

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.91  E-value=7.7e-24  Score=195.27  Aligned_cols=241  Identities=12%  Similarity=0.047  Sum_probs=202.2

Q ss_pred             hhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 015348            7 LKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLL   85 (408)
Q Consensus         7 l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (408)
                      +++|++....+.+.+.+++.+++++ +++.|.+.||     ++-.+.+....+..++..++.....    |++.+++.|+
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-----~~ls~~l~~~~~~w~~~~~~~~~~~----s~~~~ialr~  142 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-----FPLSKGLSVSGILWGLFGFLTAAVH----SFPGLIALRF  142 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-----CChHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHH
Confidence            4578899999999999999999998 9999999999     8877777777777777766666677    9999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh------hcCChhhHHHHHH
Q 015348           86 LSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAI------DRFSPPSMFLFFG  159 (408)
Q Consensus        86 l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~------~~~g~~~~f~i~~  159 (408)
                      +.|+..+...|....++..+.++++         |+..+++++...++|+++|.+++..+.      ...||||.|++.+
T Consensus       143 llGl~es~~wP~~~~~lg~wy~~~e---------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G  213 (495)
T KOG2533|consen  143 LLGLFESGGWPGVVAILGNWYGKSE---------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEG  213 (495)
T ss_pred             HHHHHhcccchHHHHHHHhhcChhh---------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHH
Confidence            9999999999999999999999874         999999999999999999999998863      3579999999999


Q ss_pred             HHHHHHHHHhhh-cccccccCCC--CCc--------------chhHHHHHHHHHHhcccchhHHHHHHHHhhhccccccc
Q 015348          160 LLVVLQFFITIA-VRESALKLPK--SQS--------------NVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLT  222 (408)
Q Consensus       160 ~~~~~~~~~~~~-~~e~~~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (408)
                      ++.++..+..++ +|+.|.+..-  +++              ....+...+++++.+++|.+|...+..++.......+.
T Consensus       214 ~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~  293 (495)
T KOG2533|consen  214 VITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFS  293 (495)
T ss_pred             HHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHH
Confidence            998888766554 8877652110  000              00111345677888999999999999998777777788


Q ss_pred             ceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015348          223 GTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSV  265 (408)
Q Consensus       223 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~  265 (408)
                      .+.|.+..+..|++..+...+.+...++++++.++.+.++||.
T Consensus       294 ~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  294 YWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             HHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            8888888876779999999999999999999999999999994

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.91  E-value=1.9e-22  Score=176.00  Aligned_cols=366  Identities=14%  Similarity=0.159  Sum_probs=252.8

Q ss_pred             hhhhhhccCC---CH----HHHHHHHHhhc-ccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcc
Q 015348            4 NFFLKDSLNV---DP----STLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSI   75 (408)
Q Consensus         4 ~~~l~~~l~~---s~----~~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~   75 (408)
                      +.|+++..+.   ++    +..+...++.. +..++.|+.|.++|+.    ..|||.+-....+..++.+++.+.+.. .
T Consensus        39 ply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~----g~Rk~~~~~f~~i~i~~~~~L~~i~~~-s  113 (438)
T COG2270          39 PLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP----GPRKKFFGFFTAIGIISTFLLWFIPPG-S  113 (438)
T ss_pred             HHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC----CCcchHHHHHHHHHHHHHHHHHHhCCC-c
Confidence            5566665544   33    34455555555 4455699999999992    456777778888888888888888843 4


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHH--HHH-h------
Q 015348           76 SIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLV--GFA-I------  146 (408)
Q Consensus        76 ~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~--~~l-~------  146 (408)
                      +++..+....+..++....++..++++.+..++++         .++..+.-+....+|+.+.-+..  +.. .      
T Consensus       114 ~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~---------~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~  184 (438)
T COG2270         114 YLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN---------MGRISGLGWALGYLGSVILLIFVVLGFALGQQTGIT  184 (438)
T ss_pred             hHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc---------cCcccccccccccccchHHHHHHHHHHhccccccee
Confidence            67777788899999999999999999999999875         44445544555666666554432  111 1      


Q ss_pred             ---------hcCChhhHHHHHHHHHHHHHHHhhh-cccccccC-CC-CCcchhHHHHHHHHHHhcccchhHHHHHHHHhh
Q 015348          147 ---------DRFSPPSMFLFFGLLVVLQFFITIA-VRESALKL-PK-SQSNVGIRAQLSELSAALRKPEIMYSVAWFAAS  214 (408)
Q Consensus       147 ---------~~~g~~~~f~i~~~~~~~~~~~~~~-~~e~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (408)
                               +...-|..+.+.++..++..+..+. +++.++.. ++ +.-.+..|+...++++..+++++..+++..++.
T Consensus       185 ~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~  264 (438)
T COG2270         185 IILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFY  264 (438)
T ss_pred             EEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence                     2234688888888888887776554 56554332 11 111234455555566667788888887777763


Q ss_pred             hcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhccccc
Q 015348          215 YSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYR  294 (408)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (408)
                      .-...........|...++|++..+..++.....+..++++++.|++.||++.|+++..+.++..+..+.....      
T Consensus       265 ~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~------  338 (438)
T COG2270         265 IDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL------  338 (438)
T ss_pred             HhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc------
Confidence            33333333333345566799999999999999999999999999999999999999988887777665553321      


Q ss_pred             ccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 015348          295 EMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSG  373 (408)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~  373 (408)
                        ..+.   ......+..+...+..... -++..+.+|+++.++.+|+++..+..+..+||.+.+.+.+..|....    
T Consensus       339 --~~~~---~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~----  409 (438)
T COG2270         339 --EGEL---DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRA----  409 (438)
T ss_pred             --cccH---HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhh----
Confidence              1111   2333344455555444444 88999999999999999999999999999999999999999885332    


Q ss_pred             hHHHHHHHHhhhhhhhhhhhccCCCCCC
Q 015348          374 LPLALIIQAVCTILPLYWSYFMPDGVKS  401 (408)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (408)
                         .+....+..++++..+.+.|.++++
T Consensus       410 ---g~~~i~vll~iGl~~L~~v~~~~~~  434 (438)
T COG2270         410 ---GVLSIIVLLLIGLLLLLRVKVPGRR  434 (438)
T ss_pred             ---HHHHHHHHHHhhHhhEEeecCCCCc
Confidence               2233344455566666677665433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.90  E-value=1.2e-21  Score=186.52  Aligned_cols=361  Identities=15%  Similarity=0.111  Sum_probs=236.0

Q ss_pred             HHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHH
Q 015348           16 STLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIA   94 (408)
Q Consensus        16 ~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   94 (408)
                      .+.+++.+...++..+ +++.|.++|+     +|||+.++++.+...++.+++++++    ++++++++|++.|+|.|..
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~-----~GRk~~l~~~~~~~~iG~ii~~~a~----~~~~l~~GR~l~G~g~G~~  159 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDR-----IGRKKTLLLAVVLFLIGAIIIALAP----SWYQLIVGRILTGLGVGGA  159 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHhccchhhh
Confidence            4568999998877766 9999999999     9999999999999999999999999    9999999999999999999


Q ss_pred             HhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-CChhhHHHHHHHHHHHHHHHhhhcc
Q 015348           95 EVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR-FSPPSMFLFFGLLVVLQFFITIAVR  173 (408)
Q Consensus        95 ~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~-~g~~~~f~i~~~~~~~~~~~~~~~~  173 (408)
                      ....+.++.|..|++         .||...+..+....+|..++..++....+. .+||..+.+..+.+++..+..+++|
T Consensus       160 ~~~~piy~sEiap~~---------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~p  230 (513)
T KOG0254|consen  160 SVLAPVYISEIAPAH---------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLP  230 (513)
T ss_pred             hhcchhhHhhcCChh---------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999886         499999999999999999996555444332 4899999999999888887777799


Q ss_pred             cccccCCCCCcc---------------hhHHHH---HH-----H---------HHHhcccchhHHHHHHHHhhhcccc-c
Q 015348          174 ESALKLPKSQSN---------------VGIRAQ---LS-----E---------LSAALRKPEIMYSVAWFAASYSIIP-V  220 (408)
Q Consensus       174 e~~~~~~~~~~~---------------~~~~~~---~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~  220 (408)
                      |+|+...+..+.               .+....   .+     +         ..+.++ |..++..+.......++. .
T Consensus       231 esp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~t  309 (513)
T KOG0254|consen  231 ESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLT  309 (513)
T ss_pred             CChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHh
Confidence            887642211110               000000   00     0         111122 333333332222122222 2


Q ss_pred             ccceeEEEEEec---cCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhccccccc-
Q 015348          221 LTGTMFFYQTQN---LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREM-  296 (408)
Q Consensus       221 ~~~~~~~~~~~~---~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  296 (408)
                      ..+...+|..+.   .|.+... .....+.++...++..+...+.||+|||+.+..+...+.++.+............. 
T Consensus       310 G~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~  388 (513)
T KOG0254|consen  310 GINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN  388 (513)
T ss_pred             CCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Confidence            223333333322   3444332 44455556666777777789999999999999998888877554322111111000 


Q ss_pred             -CcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCch
Q 015348          297 -GVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGL  374 (408)
Q Consensus       297 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~  374 (408)
                       .....++.+....+........+.|. +.+.+|..|.+.|++..++....+.+.+.+-....-.+.+..+.     .  
T Consensus       389 ~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~-----~--  461 (513)
T KOG0254|consen  389 SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGI-----G--  461 (513)
T ss_pred             cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-----c--
Confidence             00111112222233333344556677 77889999999999999999999888877666555555555441     0  


Q ss_pred             HHHHHHHHhhhhhhh-hhhhccCCCCCCcc
Q 015348          375 PLALIIQAVCTILPL-YWSYFMPDGVKSKT  403 (408)
Q Consensus       375 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  403 (408)
                      .......+++.+... .....+||++.+..
T Consensus       462 ~~f~~f~~~~~~~~~~fv~~~~pETkg~sl  491 (513)
T KOG0254|consen  462 GTFGYFGGICLLSLIIFVFFFVPETKGLTL  491 (513)
T ss_pred             chHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence            122223333333333 45667888876543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.1e-22  Score=187.78  Aligned_cols=331  Identities=12%  Similarity=0.092  Sum_probs=251.8

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcc-cccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANL-PMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~-~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      ..++++++.+.++++++.++... .....|+.+.+.||     +|.|++.+.|.++..++.++..+++    ++|++++.
T Consensus        70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-----fg~R~v~i~G~~v~~~g~~lssF~~----~i~~l~lt  140 (509)
T KOG2504|consen   70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-----FGCRTVMIAGGLVAALGLLLSSFAT----SLWQLYLT  140 (509)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-----cCchHHHHHHHHHHHHHHHHHHHHh----hHHHHHHH
Confidence            35678999999999999999984 44459999999999     9999999999999999999999999    99888777


Q ss_pred             H-HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 015348           84 L-LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLV  162 (408)
Q Consensus        84 ~-~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~  162 (408)
                      . ++.|+|.++...+....+..++++          +|+.++++...+..+|.++-|.+...+.+.+|||+.+++.+.+.
T Consensus       141 ~gvi~G~G~~~~~~paiviv~~YF~k----------kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~  210 (509)
T KOG2504|consen  141 FGVIGGLGLGLIYLPAVVILGTYFEK----------KRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGIS  210 (509)
T ss_pred             HHHHhhccchhhhcchhhhhhhHhHH----------HHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            5 899999999999988888888875          49999999999999999999999999999999999999998888


Q ss_pred             HHHHHHhhhcccccccC-----------------------------CC-CCc------------chhHH--HHHHHH---
Q 015348          163 VLQFFITIAVRESALKL-----------------------------PK-SQS------------NVGIR--AQLSEL---  195 (408)
Q Consensus       163 ~~~~~~~~~~~e~~~~~-----------------------------~~-~~~------------~~~~~--~~~~~~---  195 (408)
                      +-.......+++...+.                             .+ ..+            +.+.+  ...+..   
T Consensus       211 l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (509)
T KOG2504|consen  211 LNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSML  290 (509)
T ss_pred             HHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhh
Confidence            66665555444310000                             00 000            00000  001111   


Q ss_pred             -HHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCcee--hH
Q 015348          196 -SAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKL--IS  272 (408)
Q Consensus       196 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~  272 (408)
                       .+.+++|.++.+.+...+............+.|.. ..+++..+...+.++.++..+++.++.|.+.|+...++.  ..
T Consensus       291 d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~  369 (509)
T KOG2504|consen  291 DLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFL  369 (509)
T ss_pred             hHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHH
Confidence             46688888888777776655554444444444444 689999999999999999999999999999999874333  33


Q ss_pred             HHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 015348          273 AIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFI  351 (408)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~  351 (408)
                      .+.+..++..+.           ......++.++...+..++..+.+... ...+.++++.++-..++|+...+..++..
T Consensus       370 ~~ll~~gl~~~~-----------~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l  438 (509)
T KOG2504|consen  370 LTLLIAGLARLF-----------LPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGAL  438 (509)
T ss_pred             HHHHHHHHHHHH-----------HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHH
Confidence            333333333221           112233345566667777777766666 46888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 015348          352 VSGYLGVALASYTGV  366 (408)
Q Consensus       352 ig~~~~g~l~~~~g~  366 (408)
                      +||.+.|.+.|..|.
T Consensus       439 ~gpPiag~~~d~tg~  453 (509)
T KOG2504|consen  439 VGPPIAGLLYDITGN  453 (509)
T ss_pred             cCcccceeeeeccCC
Confidence            999999999998884

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.88  E-value=3.4e-21  Score=164.60  Aligned_cols=322  Identities=14%  Similarity=0.091  Sum_probs=248.4

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      -+++|+|+|.++.|++++++.+.+.. +|+..+++.|     +|.++.+..+.++.+++..+=...     +.+.++..-
T Consensus        37 ~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-----~g~er~l~~~Llli~~G~~iR~~~-----~~~~L~~gt  106 (395)
T COG2807          37 EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-----FGEERSLFLALLLIAAGILIRSLG-----GLPLLFLGT  106 (395)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----HhhHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHH
Confidence            36789999999999999999977665 9999999999     999999999999888888776554     467788889


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhhHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRF-SPPSMFLFFGLLVV  163 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~-g~~~~f~i~~~~~~  163 (408)
                      .+.|.+.+..++..++.+-+.+|+          +-+..++.+....++|..+++.+.-.+.++. |||....+-+.+++
T Consensus       107 ~l~G~gIav~nVLLPslIK~~Fpk----------~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~al  176 (395)
T COG2807         107 LLAGAGIAVINVLLPSLIKRDFPK----------RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLAL  176 (395)
T ss_pred             HHHHhhHHHHHHhhhHHHHhhccc----------chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHH
Confidence            999999999999999999998886          4888999999999999999999998888887 79999999999999


Q ss_pred             HHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHH
Q 015348          164 LQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGIS  243 (408)
Q Consensus       164 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  243 (408)
                      +.++.|+.-..+++.+..       +...++-.+++|+|.-|...+++-+.....+....+.|.++.| .|+|+++.|.+
T Consensus       177 lAl~~WlPq~~r~~~~~~-------~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~l  248 (395)
T COG2807         177 LALLIWLPQALREQAASI-------ATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSL  248 (395)
T ss_pred             HHHHHHhhhccccccccc-------ccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhH
Confidence            888877643211111111       0111112345899999999999888777777777778777665 79999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-
Q 015348          244 KVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-  322 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  322 (408)
                      .....+..+..++....+.+|..+++.+......+.....+.+.+         .+...  .+...+..|++.+..+|. 
T Consensus       249 lsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~---------~P~~~--~~lw~~llG~G~G~~F~la  317 (395)
T COG2807         249 LSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL---------APGQL--PILWALLLGLGQGGAFPLA  317 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH---------hhhhH--HHHHHHHHhCccchHHHHH
Confidence            999999999999999999997765555544443333333332221         11111  111146667777777777 


Q ss_pred             HHHHHHh-cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          323 SVYIAQV-CPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       323 ~~~~~~~-~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .+++... .++++.++..|+.+.++.+=...||.+.|++-|..|.
T Consensus       318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gs  362 (395)
T COG2807         318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGS  362 (395)
T ss_pred             HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCC
Confidence            6666555 4457778899999999999999999999999999874

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.87  E-value=7.5e-21  Score=170.79  Aligned_cols=316  Identities=11%  Similarity=0.069  Sum_probs=212.3

Q ss_pred             hhhhhccCCCHHH-HHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            5 FFLKDSLNVDPST-LQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         5 ~~l~~~l~~s~~~-~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      .++++|+|+|++| .|.+.+....++.+ +++.|.++||     +|.|+++.++.+..++..+++++.+    ++..+.+
T Consensus        50 p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-----lG~K~vL~l~~l~Wsl~t~L~~fa~----Sl~~L~i  120 (511)
T TIGR00806        50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-----LRYKPVLVLQALSFVCVWLLLLLGT----SVWHMQL  120 (511)
T ss_pred             HHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence            4677899999999 99999999999988 9999999999     9999999999999999999999998    9999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHH---H
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFF---G  159 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~---~  159 (408)
                      .|++.|++.+... +...++..++|+++         |+++.++.+.+..+|.+++++++++ ...+|||.-..+.   .
T Consensus       121 ~R~llGvaEA~~~-A~~syI~~WfP~kE---------R~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl  189 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYSSYIFSLVPPSR---------YQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISL  189 (511)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHH
Confidence            9999999999999 88899999999864         9999999999999999999999999 5567998755443   3


Q ss_pred             HHHHHHHHHhhhcccccc------cC-----------C--CCCc--c---------hhHHHHHHHHHHhcccchhHHHHH
Q 015348          160 LLVVLQFFITIAVRESAL------KL-----------P--KSQS--N---------VGIRAQLSELSAALRKPEIMYSVA  209 (408)
Q Consensus       160 ~~~~~~~~~~~~~~e~~~------~~-----------~--~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~  209 (408)
                      ....++++..+++|.+++      ++           .  +++.  .         ...+..++++++..+||.++.-.+
T Consensus       190 ~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSl  269 (511)
T TIGR00806       190 VFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSL  269 (511)
T ss_pred             HHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhH
Confidence            333444555666763322      00           0  0000  0         001233455666788898887777


Q ss_pred             HHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhh
Q 015348          210 WFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFV  289 (408)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (408)
                      ...+..+......++......+.-+-++...|..-++..+.+.+..+..|.+-.++.+.-.+.++.+...-..++ ++  
T Consensus       270 Wwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll-~~--  346 (511)
T TIGR00806       270 WWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLV-FW--  346 (511)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHh-hh--
Confidence            776644443333321111110000101125566666767777778888888755553322222222111111111 11  


Q ss_pred             cccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHH
Q 015348          290 KGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALA  349 (408)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg  349 (408)
                            .+..++.|......+++........++ ..-+++....+.-|-++|+.+.+.-+-
T Consensus       347 ------m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~L  401 (511)
T TIGR00806       347 ------MSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATAL  401 (511)
T ss_pred             ------hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHH
Confidence                  233345555555555555444444555 666677777788888999876654433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.87  E-value=4.2e-20  Score=171.03  Aligned_cols=341  Identities=15%  Similarity=0.136  Sum_probs=200.2

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhccc-ccccchheeecccccccCC-cchhHHHHHHHHHHHHHHHHHHhccCcchHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLP-MVGKPLYGVVSDAVYISGQ-HRVPYIAIGAFLQAVSWLAIAILSQSSISIFTM   80 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~-~~~~~~~G~l~Dr~~~~~~-grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (408)
                      +..|+++++|+|+.+.+.+.+.+... ++..+++|+++||     + ||||.++++.++..++.+++....   .+...+
T Consensus        32 L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDR-----ilGrrr~iliG~il~~lg~lll~~~~---~~~~~~  103 (493)
T PRK15462         32 LILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADK-----VLGNRMAVMLGALLMAIGHVVLGASE---IHPSFL  103 (493)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----ccCcHHHHHHHHHHHHHHHHHHHHhh---cchhHH
Confidence            45788889999999999998888855 4448899999999     8 999999999999988887666432   122233


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGL  160 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~  160 (408)
                      .....+..++.+...+...+++.|..|+++  +     +|++..++.+...++|..++|.+.+++.+..||++.|.+.++
T Consensus       104 ~l~l~li~iG~G~~~~~~~alv~elfp~~~--~-----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai  176 (493)
T PRK15462        104 YLSLAIIVCGYGLFKSNVSCLLGELYEPTD--P-----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV  176 (493)
T ss_pred             HHHHHHHHHhcccccccHHHHHHHHCCCCC--c-----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence            444445556777777777799999998764  2     588889999999999999999999999999999999998776


Q ss_pred             HHHHHHHHhhhcc----cccc-cCCCCCcchhH----------------------HHHHHH-----------------HH
Q 015348          161 LVVLQFFITIAVR----ESAL-KLPKSQSNVGI----------------------RAQLSE-----------------LS  196 (408)
Q Consensus       161 ~~~~~~~~~~~~~----e~~~-~~~~~~~~~~~----------------------~~~~~~-----------------~~  196 (408)
                      ..++..+.....+    ++.. ++++.++++..                      .+....                 ..
T Consensus       177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
T PRK15462        177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYR  256 (493)
T ss_pred             HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555444333222    1110 11111000000                      000000                 00


Q ss_pred             Hhc---ccchhHHHHHHH---HhhhcccccccceeEEEEEec-----cCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015348          197 AAL---RKPEIMYSVAWF---AASYSIIPVLTGTMFFYQTQN-----LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSV  265 (408)
Q Consensus       197 ~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~  265 (408)
                      +..   .+++++...+..   .+.+.......+....|..+.     .|++ -..++..+++.+..++.+++..++-.|.
T Consensus       257 ~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l  335 (493)
T PRK15462        257 KAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKES  335 (493)
T ss_pred             hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence            001   011222222211   112333333333333332222     2321 1133445555555555554444332222


Q ss_pred             -----CCce--ehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHH
Q 015348          266 -----SPRK--LISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGS  337 (408)
Q Consensus       266 -----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~  337 (408)
                           ....  -+..+.++.++..+...+-...... -+. .+.++++...+...+++....|. .+++++.+|++.+|.
T Consensus       336 ~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~-~~~-~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~  413 (493)
T PRK15462        336 VAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAM-YGH-SSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGV  413 (493)
T ss_pred             hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCC-cCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHH
Confidence                 1111  1445555555554332211111110 111 23335677788889999999999 999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015348          338 IMAFVMSAVALAFIVSGYLGVALASYT  364 (408)
Q Consensus       338 ~~g~~~~~~~lg~~ig~~~~g~l~~~~  364 (408)
                      .+|+.....   ..+|+.++|.+.+..
T Consensus       414 ~mg~w~l~~---~~~~~~~~g~~~~~~  437 (493)
T PRK15462        414 LTGIYMLLS---GAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHh
Confidence            999984422   244455555554444

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.85  E-value=5e-19  Score=169.45  Aligned_cols=322  Identities=14%  Similarity=0.082  Sum_probs=221.8

Q ss_pred             hccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 015348            9 DSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLS   87 (408)
Q Consensus         9 ~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (408)
                      +....+.....+..+++.++..+ ..++|+++||     +|||++++.+.++..++.+..++++    |++.+++.|++.
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-----~GRk~~~~~~~~~~~i~~~~~a~a~----~~~~~~~~Rfl~  181 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-----FGRKPVLLVSLLLFIIFGILTAFAP----NYWMFLIFRFLS  181 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-----cccHHHHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHHH
Confidence            45566778888888888888888 7789999999     9999999999999999999999999    999999999999


Q ss_pred             HHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHH
Q 015348           88 NLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFF  167 (408)
Q Consensus        88 g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~~  167 (408)
                      |++.+........++.|+.++++         |+.+.++ ......+..+++..++++..  +||+.+++..++..+.++
T Consensus       182 G~~~~~~~~~~~~~~~E~~~~~~---------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~  249 (521)
T KOG0255|consen  182 GFFGSGPLTVGFGLVAEIVSPKQ---------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLL  249 (521)
T ss_pred             HhhccchhHHhHhhheeecCcch---------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999864         9999998 77777888888888888877  899999999999888877


Q ss_pred             HhhhcccccccCCCCCcc---------------------hhHHHH--H-----------HHHHHhcccchhHHHHHHHHh
Q 015348          168 ITIAVRESALKLPKSQSN---------------------VGIRAQ--L-----------SELSAALRKPEIMYSVAWFAA  213 (408)
Q Consensus       168 ~~~~~~e~~~~~~~~~~~---------------------~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~~  213 (408)
                      .+++.+|+++....+.+.                     +..+..  .           ......++.|++....+...+
T Consensus       250 ~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~  329 (521)
T KOG0255|consen  250 LWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLF  329 (521)
T ss_pred             HHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHH
Confidence            766676876532111110                     000000  0           012233444544444444433


Q ss_pred             hhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccc
Q 015348          214 SYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVY  293 (408)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (408)
                      .+.......... .+....+|.+.   .......+..........+...|+.|||.....+.....+..+...+..... 
T Consensus       330 ~~~~~~~~y~gl-~~~~~~lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~-  404 (521)
T KOG0255|consen  330 IWFVFSLVYYGL-SLNVSGLGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL-  404 (521)
T ss_pred             HHHHHhHHHHhh-hhhhhhcCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc-
Confidence            232111111111 11111233222   2333333446666667778889999999888888777777665544311111 


Q ss_pred             cccCcCceEeehhhhHHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          294 REMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALAS  362 (408)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~  362 (408)
                            ..+...+...+..+....++........|..|+..|..+.+..+....++..++|.+.-....
T Consensus       405 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  405 ------GGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                  101123333344444444555557888999999999999999999999999999987655443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.84  E-value=2e-21  Score=187.64  Aligned_cols=262  Identities=15%  Similarity=0.055  Sum_probs=202.4

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC-----------
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS-----------   73 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~-----------   73 (408)
                      -++++++++..+.|++.+.+.+++.+ .++.|++.||     +|||+++.++.++.+++.+++++.+..           
T Consensus        58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-----~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-----LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-----cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            46788999999999999999988877 8999999999     999999999999999999988765300           


Q ss_pred             ------------------------------------cchHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhc
Q 015348           74 ------------------------------------SISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQ  117 (408)
Q Consensus        74 ------------------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~  117 (408)
                                                          +..+..+++.|+++|+|.+...+...+++.|+.|+++       
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~-------  205 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN-------  205 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccc-------
Confidence                                                0135567889999999999999999999999998864       


Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC----------------------ChhhHHHHHHHHHHHHHHHhhhcccc
Q 015348          118 SSSGELQSFVWMSSSMGGVLGNLLVGFAIDRF----------------------SPPSMFLFFGLLVVLQFFITIAVRES  175 (408)
Q Consensus       118 ~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~----------------------g~~~~f~i~~~~~~~~~~~~~~~~e~  175 (408)
                        |++..++.+....+|..+|+++++++.+.+                      +|+..|++.+++.++..+..+++|++
T Consensus       206 --~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       206 --SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKA  283 (633)
T ss_pred             --cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence              999999999999999999999999987643                      26777888888777766655556554


Q ss_pred             cccCCC----C----C-----cc-------hhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCC
Q 015348          176 ALKLPK----S----Q-----SN-------VGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKI  235 (408)
Q Consensus       176 ~~~~~~----~----~-----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  235 (408)
                      .+++.+    +    +     ++       ...++..+..+++++||.++...+..++..........+.|.|..+.+|+
T Consensus       284 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~  363 (633)
T TIGR00805       284 LPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGI  363 (633)
T ss_pred             cCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            221100    0    0     00       01123345566789999998888877776666666777788888888999


Q ss_pred             ChhhHHHHHHHHHH-HHHHHHHHHHHhhccCCC--ceehHHHHHHHHHH
Q 015348          236 RSSVLGISKVFGQA-AMLLWGVIYNSGLKSVSP--RKLISAIQAMMAVF  281 (408)
Q Consensus       236 ~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~  281 (408)
                      ++.+.+++.....+ +.+++.++.|++.||++.  |+.+..+.+...+.
T Consensus       364 s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~  412 (633)
T TIGR00805       364 SSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS  412 (633)
T ss_pred             cHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence            99999988877665 668899999999999884  45555555444444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.84  E-value=2.3e-19  Score=167.68  Aligned_cols=327  Identities=12%  Similarity=0.043  Sum_probs=203.1

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      .++..|+|-+ ....|+.+...++... .|+.|.++|.     +|||..++.+.++..++.+.++.++    |...++..
T Consensus        68 ~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-----fGRr~~~i~g~~l~vvG~Iv~atA~----~~~~~iag  137 (599)
T PF06609_consen   68 PYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-----FGRRYFFIIGSLLGVVGSIVCATAQ----NMNTFIAG  137 (599)
T ss_pred             HHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-----hcchHHHHHHHHHHHhHHHHhhcCC----cHHHHHHH
Confidence            4667788876 4455566666655444 8999999999     9999999999999999999999999    99999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVV  163 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~  163 (408)
                      ..+.|+|.|...... ..+.|..|.+.         |+..........-....+++.++..+..+.+|||.|++..+...
T Consensus       138 ~~l~GvgaG~~~~~~-~~isEl~p~k~---------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~  207 (599)
T PF06609_consen  138 MVLYGVGAGVQELAA-LAISELVPNKW---------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSG  207 (599)
T ss_pred             HHHHHHhhHHHHHHH-HHHHHhcccch---------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHH
Confidence            999999988887654 66899998753         66666655544444444667777777667799999999988877


Q ss_pred             HHHHHhhh--cccccccCCC--CCcchhHH--------------------------------------------------
Q 015348          164 LQFFITIA--VRESALKLPK--SQSNVGIR--------------------------------------------------  189 (408)
Q Consensus       164 ~~~~~~~~--~~e~~~~~~~--~~~~~~~~--------------------------------------------------  189 (408)
                      +.++..++  .|++++..+.  ..+++..+                                                  
T Consensus       208 i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F  287 (599)
T PF06609_consen  208 IALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAF  287 (599)
T ss_pred             HHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHH
Confidence            76554333  3332211111  10110000                                                  


Q ss_pred             ---HHH---HH---HHHhcccc-hhHHHHHHHHhhhcccccccceeEEEEEeccCCCh---hhHHHHHHHHHHHHHHHHH
Q 015348          190 ---AQL---SE---LSAALRKP-EIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRS---SVLGISKVFGQAAMLLWGV  256 (408)
Q Consensus       190 ---~~~---~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~g~~~~~~~~~~~~~~~  256 (408)
                         |..   ++   -++++|++ .+...++..++..+........+|......++-|+   ...++.......+...+..
T Consensus       288 ~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~  367 (599)
T PF06609_consen  288 VVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAV  367 (599)
T ss_pred             HHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHH
Confidence               000   00   12445553 33333444444333222222223322222233333   3467777778888888888


Q ss_pred             HHHHhhccCCCceeh-HHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHh-hhhHHHHHHHhcCCch
Q 015348          257 IYNSGLKSVSPRKLI-SAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFK-ILPFSVYIAQVCPPGC  334 (408)
Q Consensus       257 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~  334 (408)
                      +.+.+.++.++-|.. ..+...+.+..-+ ...       ....+. -..+...++.+++.+. ..+.....+-.+|++.
T Consensus       368 i~g~l~~~ir~~Kw~li~~~~~~ta~~Ga-ma~-------~~~~n~-~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~  438 (599)
T PF06609_consen  368 ILGLLFSKIRHIKWQLIFGSVLMTAFCGA-MAA-------VRPDNK-NAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED  438 (599)
T ss_pred             HHHHHHHHccchhHHHHHHHHHHHHHHHH-HHH-------ccCCCc-chHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH
Confidence            888888877655544 3443333322111 110       111111 1223334444444332 2344666667799999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          335 EGSIMAFVMSAVALAFIVSGYLGVAL  360 (408)
Q Consensus       335 ~g~~~g~~~~~~~lg~~ig~~~~g~l  360 (408)
                      .|++.|+..+++.+|+.+|..+...+
T Consensus       439 ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  439 IGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999999999999998776554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.84  E-value=2.1e-25  Score=209.99  Aligned_cols=366  Identities=16%  Similarity=0.131  Sum_probs=231.2

Q ss_pred             HHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHH
Q 015348           15 PSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASI   93 (408)
Q Consensus        15 ~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   93 (408)
                      ..+.++..+...++..+ .++.|.++||     +|||+.++++.++..++.++..+++.. .+++.+.+.|++.|++.|.
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~-----~GRk~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~R~~~G~~~g~  118 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADR-----YGRKPALIISALLMIIGSILIAFAPSY-NNFWMLLIGRFLIGFGIGG  118 (451)
T ss_pred             HHHHHHHHHHHHhhhccccccccccccc-----ccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            45678888888888877 8999999999     999999999999999999988887632 3789999999999999999


Q ss_pred             HHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc---CChhhHHHHHHHHHHHHHHHhh
Q 015348           94 AEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR---FSPPSMFLFFGLLVVLQFFITI  170 (408)
Q Consensus        94 ~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~---~g~~~~f~i~~~~~~~~~~~~~  170 (408)
                      ..+....++.|..|++.         |++..++.+....+|.+++..++....+.   .+||..+.+.+++.++..+...
T Consensus       119 ~~~~~~~~~~E~~~~~~---------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~  189 (451)
T PF00083_consen  119 AYVVSPIYISEIAPPKH---------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRF  189 (451)
T ss_pred             ccccccccccccccccc---------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999998864         89999988888888888887776544333   3499999999888877777777


Q ss_pred             hcccccccCCCCCcc-----------------hhHHHH---H-------HHHHHhcccchh-HHHHHHHHhhhc---ccc
Q 015348          171 AVRESALKLPKSQSN-----------------VGIRAQ---L-------SELSAALRKPEI-MYSVAWFAASYS---IIP  219 (408)
Q Consensus       171 ~~~e~~~~~~~~~~~-----------------~~~~~~---~-------~~~~~~~~~~~~-~~~~~~~~~~~~---~~~  219 (408)
                      ++||+|+....+++.                 ++.++.   .       ....+.++++.. +.......+...   ...
T Consensus       190 ~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~  269 (451)
T PF00083_consen  190 FLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGI  269 (451)
T ss_pred             ccccccceecccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccc
Confidence            799986532111000                 000000   0       012233444331 122222222111   111


Q ss_pred             cccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcC
Q 015348          220 VLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP  299 (408)
Q Consensus       220 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (408)
                      .......+...+..+.+..  -.......+...++.++...+.||+|||+.+..+.....++............... ..
T Consensus       270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~  346 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSS-SW  346 (451)
T ss_pred             ccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            1122222333344555555  12223334555566666678999999999988887776665443210000000000 00


Q ss_pred             ceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHH
Q 015348          300 DSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLAL  378 (408)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~  378 (408)
                      .....+....+..........|. +.+..|..|.+.|++..|+.....++++.+++.+...+.+..+..       ....
T Consensus       347 ~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~-------~~~~  419 (451)
T PF00083_consen  347 WSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGW-------GVFL  419 (451)
T ss_pred             cccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccch
Confidence            01111111122222223334455 678899999999999999999999999999998888877766511       1112


Q ss_pred             HHHHhhhhhhhhhhhccCCCCCCcchh
Q 015348          379 IIQAVCTILPLYWSYFMPDGVKSKTTK  405 (408)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (408)
                      ....++.+.....+.++||++++..+|
T Consensus       420 i~~~~~~i~~i~~~~~lpET~g~~l~e  446 (451)
T PF00083_consen  420 IFAGVCLIAIIFVYFFLPETKGKTLEE  446 (451)
T ss_pred             hhHHHHHHHHhheeEEEeeCCCCCHHH
Confidence            223333334445667889988776544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=99.83  E-value=1.1e-18  Score=154.63  Aligned_cols=264  Identities=11%  Similarity=0.052  Sum_probs=189.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-------
Q 015348           76 SIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR-------  148 (408)
Q Consensus        76 ~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~-------  148 (408)
                      +++.+++..++.|.|.++.++..++++.+..++|+         +.+.+++.+...++|.++||.+++.+...       
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~---------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~   79 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET---------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSM   79 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch---------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhh
Confidence            89999999999999999999999999999988764         77889999999999999999999988732       


Q ss_pred             ---------CChhhHHHHHHHHHHHHHHHhhh--cccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcc
Q 015348          149 ---------FSPPSMFLFFGLLVVLQFFITIA--VRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSI  217 (408)
Q Consensus       149 ---------~g~~~~f~i~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (408)
                               .+|++++++.+.+..+..+.+.+  .||.+++++++..+   ++. .+.++.+++|.++...+..++....
T Consensus        80 ~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~l~~~~~f~yvg~  155 (310)
T TIGR01272        80 QVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSS---GDT-TQKTSAFQFTHLVLGALGIFVYVGA  155 (310)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccccccccc---ccc-cchhhHHhhHHHHHHHHHHHHHHHH
Confidence                     36899999776665555444444  45433322211100   110 1112346777777766666664445


Q ss_pred             cccccceeEEEEEe--ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccc
Q 015348          218 IPVLTGTMFFYQTQ--NLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYRE  295 (408)
Q Consensus       218 ~~~~~~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (408)
                      .....++.+.|..+  .+|+++.+.+........+.++|.++.+++.||+++|+.+..+..+..+..++...        
T Consensus       156 e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~--------  227 (310)
T TIGR01272       156 EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL--------  227 (310)
T ss_pred             HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH--------
Confidence            66666777777764  36899999999999999999999999999999999988887766655554432211        


Q ss_pred             cCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          296 MGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                        .+..  .........+++.....|. .+...+..|+ +.+++.++. ....+|+.+.|.+.|.+.|..|.
T Consensus       228 --~~~~--~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~  293 (310)
T TIGR01272       228 --THGY--VAMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGI  293 (310)
T ss_pred             --cCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccc
Confidence              0111  1122333456666777777 7777777774 356666764 67789999999999999998875

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.83  E-value=2.2e-20  Score=153.61  Aligned_cols=362  Identities=12%  Similarity=0.075  Sum_probs=230.2

Q ss_pred             chhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHH---HhccCcchH
Q 015348            2 AVNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIA---ILSQSSISI   77 (408)
Q Consensus         2 ~~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~---~~~~~~~~~   77 (408)
                      |+-.+.+.|.+++.++..++.++++.|-++ ..++|++.||.    +|-|.--++-+....++-+.++   ..+    .+
T Consensus        65 alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~----fgir~gtii~~~fv~~GqliFa~Ggi~~----aF  136 (459)
T KOG4686|consen   65 ALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRR----FGIRLGTIILCIFVFLGQLIFAAGGISH----AF  136 (459)
T ss_pred             hhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhh----hhhhHHHHHHHHHHHHHHHHHHhchHHH----HH
Confidence            345677888999999999999999999888 88899999993    5555433333333444444433   344    89


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCh------
Q 015348           78 FTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSP------  151 (408)
Q Consensus        78 ~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~------  151 (408)
                      |.+...|++.|+|.-...++.+.+...+++.++         .+.++++.....-+|+.+--.+.+++++..+-      
T Consensus       137 w~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE---------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~g  207 (459)
T KOG4686|consen  137 WTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE---------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVG  207 (459)
T ss_pred             HHHHhhheeeccCchhhhhhhcceeEEEecCcc---------ccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccch
Confidence            999999999999988888888899999998764         78888888778888887777777777665221      


Q ss_pred             hh---H-HHHHHHHHHHHHHHhhh--cccccccCCCCCcchhHH--HHHHHHHHhcccchhHHHHHHHHhhhcccccccc
Q 015348          152 PS---M-FLFFGLLVVLQFFITIA--VRESALKLPKSQSNVGIR--AQLSELSAALRKPEIMYSVAWFAASYSIIPVLTG  223 (408)
Q Consensus       152 ~~---~-f~i~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (408)
                      +.   . ..+....+....+...-  ..+++.++.-+.++....  ..+.+. ..+ .|++|.+.+..+..+....-+..
T Consensus       208 hT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~Ge~pkLtdv-~~f-~ppfw~~~iicv~yyva~fPFi~  285 (459)
T KOG4686|consen  208 HTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFLGEEPKLTDV-NTF-YPPFWVLVIICVLYYVAWFPFIT  285 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcccCCcccccc-ccc-CccHHHHHHHHHHHHHHHHHHhh
Confidence            01   1 11111122222222111  222211110000000000  001111 001 36778877777765555445556


Q ss_pred             eeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEe
Q 015348          224 TMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLY  303 (408)
Q Consensus       224 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      ..+.++++.+|+|+...+-+.+....-+.+.+++.|.++||.|++.....+..+..+..=..+.        +..-+.  
T Consensus       286 lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~--------Ft~lsP--  355 (459)
T KOG4686|consen  286 LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLF--------FTFLSP--  355 (459)
T ss_pred             hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHH--------hhhccH--
Confidence            6677788899999999998877777778888899999999999877766554444333111111        111111  


Q ss_pred             ehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHH
Q 015348          304 VLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQA  382 (408)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  382 (408)
                        ...+...|......... +-.+..++|+++.|+++|..++..|+|-.+.|++.|.+.|.-|.    +...-..++++.
T Consensus       356 --y~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~----y~~le~ffl~~~  429 (459)
T KOG4686|consen  356 --YTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS----YDNLEAFFLIIG  429 (459)
T ss_pred             --HHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc----hhhHHHHHHHHH
Confidence              12233333333333332 56778889999999999999999999999999999999987653    333445555655


Q ss_pred             hhhhhhhhhhhccCCC
Q 015348          383 VCTILPLYWSYFMPDG  398 (408)
Q Consensus       383 ~~~~~~~~~~~~~~~~  398 (408)
                      ...+......+.+.++
T Consensus       430 ~~aL~svgil~~~N~k  445 (459)
T KOG4686|consen  430 LMALTSVGILFYLNKK  445 (459)
T ss_pred             HHHHHHHHHHhheecc
Confidence            5555555555555544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.79  E-value=3.2e-18  Score=153.19  Aligned_cols=340  Identities=15%  Similarity=0.167  Sum_probs=215.0

Q ss_pred             hhhhhhccC----CCHHHHHHHHHhhc-ccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHH
Q 015348            4 NFFLKDSLN----VDPSTLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIF   78 (408)
Q Consensus         4 ~~~l~~~l~----~s~~~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~   78 (408)
                      .+|+..+++    +|+++..-+.+.+. +.|+...++|+++||+    .|+|+.++.|.++..++.+.++...  .....
T Consensus        45 ~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~----LG~~~tI~lGail~~iGh~~L~~~~--~~~~~  118 (498)
T COG3104          45 ILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRV----LGTRRTIVLGAILMAIGHLVLAISS--VSGPG  118 (498)
T ss_pred             HHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHHhccc--ccccc
Confidence            456666666    99988777777776 8888899999999996    7999999999999999999988873  11567


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHH
Q 015348           79 TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFF  158 (408)
Q Consensus        79 ~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~  158 (408)
                      .+++...+.++|.|...+...+++.|..|+++  .     +|...++.++++.++|+.++|.+.+++.+..||+..|...
T Consensus       119 gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D--p-----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~a  191 (498)
T COG3104         119 GLYIGLALIIVGTGLFKPNISSLLGELYPKDD--P-----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLA  191 (498)
T ss_pred             HHHHHHHHHHhccccccccHHHHHHHhcCCCC--c-----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            78888888889999999999999999999876  2     5888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccc----cccCCCC--Ccch--------------h---H---HHHHH-------------HHHHhc
Q 015348          159 GLLVVLQFFITIAVRES----ALKLPKS--QSNV--------------G---I---RAQLS-------------ELSAAL  199 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~e~----~~~~~~~--~~~~--------------~---~---~~~~~-------------~~~~~~  199 (408)
                      ++-..+.++.....|..    +..+++.  +.+.              .   .   .+.++             ...+.+
T Consensus       192 avGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~  271 (498)
T COG3104         192 AVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAF  271 (498)
T ss_pred             HHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            98888776655543321    1111110  0000              0   0   00000             001111


Q ss_pred             cc-------chhHHHH---HHHHhhhcccccccceeEEEEEec-----cCCChhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015348          200 RK-------PEIMYSV---AWFAASYSIIPVLTGTMFFYQTQN-----LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKS  264 (408)
Q Consensus       200 ~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~  264 (408)
                      ++       ++.+..+   +...+.|.......+....|..+.     +|++ -...+..+...+.-++.+++..++-.|
T Consensus       272 ~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~  350 (498)
T COG3104         272 RSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTK  350 (498)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhH
Confidence            11       1222222   222222443333333333332222     2221 123455556655555555555444433


Q ss_pred             CC-----Cc--eehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhH
Q 015348          265 VS-----PR--KLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEG  336 (408)
Q Consensus       265 ~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g  336 (408)
                      .+     .+  .-+..+..+++...+............ ....+.++++...+...+++....|. .+++.+.+|+...+
T Consensus       351 l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~-~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s  429 (498)
T COG3104         351 LGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGP-SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKS  429 (498)
T ss_pred             hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHH
Confidence            21     11  123344444444433322210000000 11133446777888899999999999 99999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 015348          337 SIMAFVMSAVALAFIVSGYLGV  358 (408)
Q Consensus       337 ~~~g~~~~~~~lg~~ig~~~~g  358 (408)
                      ..+|..-.....++.++..+++
T Consensus       430 ~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         430 FIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHHHHHHHHHHHHhhceecc
Confidence            8877776666666666555544

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.79  E-value=1.6e-19  Score=158.63  Aligned_cols=364  Identities=12%  Similarity=0.092  Sum_probs=222.0

Q ss_pred             CCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC--c-chHHHHHHHHHHHH
Q 015348           13 VDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS--S-ISIFTMSLFLLLSN   88 (408)
Q Consensus        13 ~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~g   88 (408)
                      .++.-.+.+..+..++.++ |+++|++.||     +|||++.....++..+++++++++...  . .-.+++...|++.|
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-----~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LG  155 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-----FGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLG  155 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhh
Confidence            4566677777788888888 9999999999     999999999999999999877765532  1 24688899999999


Q ss_pred             HHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh----c-----------CChhh
Q 015348           89 LGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID----R-----------FSPPS  153 (408)
Q Consensus        89 ~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~----~-----------~g~~~  153 (408)
                      +|.|.-+|...+..+|.+.++         .||...+.+......|...|.+++-.+..    .           .=||.
T Consensus       156 iGIGGDYPlSAtI~SE~an~~---------~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl  226 (538)
T KOG0252|consen  156 IGIGGDYPLSATIMSESANKK---------TRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRI  226 (538)
T ss_pred             ccccCCCcchHHHhhhhhhhc---------cccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHH
Confidence            999999999978888877765         37777666666666666666655544432    1           12999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccccccCCCCCcc-------------h-------------hHHHHHHHHHHhcccchhHHH
Q 015348          154 MFLFFGLLVVLQFFITIAVRESALKLPKSQSN-------------V-------------GIRAQLSELSAALRKPEIMYS  207 (408)
Q Consensus       154 ~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~-------------~-------------~~~~~~~~~~~~~~~~~~~~~  207 (408)
                      .|.+.+++.++....-+.+||+++.+.-.+++             .             ..++..+.+.+.+..+.. ..
T Consensus       227 ~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg-~~  305 (538)
T KOG0252|consen  227 IFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHG-KH  305 (538)
T ss_pred             HHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHH-HH
Confidence            99888777777666666689886543100000             0             000001111111111111 12


Q ss_pred             HHHHHhhhcccccccceeEEEEEec---cCCChhhH--------HHHHH-HHHHHHHHHHHHHHHhhccCCCceehHHHH
Q 015348          208 VAWFAASYSIIPVLTGTMFFYQTQN---LKIRSSVL--------GISKV-FGQAAMLLWGVIYNSGLKSVSPRKLISAIQ  275 (408)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~--------g~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  275 (408)
                      ++.....|+...........+..+.   .|+.+...        ..... +...+.+.|.++...+.|+.||++....+.
T Consensus       306 Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF  385 (538)
T KOG0252|consen  306 LLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGF  385 (538)
T ss_pred             HHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhH
Confidence            2222222333222222122222211   23322221        11222 222334446667777899999999999888


Q ss_pred             HHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH---HHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 015348          276 AMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF---SVYIAQVCPPGCEGSIMAFVMSAVALAFIV  352 (408)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~g~~~g~~~~~~~lg~~i  352 (408)
                      .++.+..+....   .++.   .....-..+...+...++.  +.|.   ..+.+|..|.+.||+..|+....+..|..+
T Consensus       386 ~~~~i~~~~~~~---~y~~---~~~~~Gf~v~y~l~~ff~N--FGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAiv  457 (538)
T KOG0252|consen  386 FIMTIFFFVIAG---PYNQ---LENTIGFVVLYSLTFFFGN--FGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIV  457 (538)
T ss_pred             HHHHHHHHHHcC---Cccc---ccccCceeehHHHHHHHHh--cCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHH
Confidence            888776555221   1111   0011111222223333332  2233   456789999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCchHHHHHHHHhhhhhhhhhhhccCCCCCCc
Q 015348          353 SGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSK  402 (408)
Q Consensus       353 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (408)
                      |....+++.++-   ..........+.+.+.+.+...+....+||++.++
T Consensus       458 g~~~F~~~t~~~---yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~  504 (538)
T KOG0252|consen  458 GAFGFLYLTDHN---YPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKS  504 (538)
T ss_pred             HHHHhhHhhhcc---CCccccchHHHHHHHHHHHHhHheeEEeecccccC
Confidence            999999988842   11122234445566666777777777888765443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.78  E-value=1.4e-17  Score=142.21  Aligned_cols=323  Identities=13%  Similarity=0.031  Sum_probs=211.5

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      .-+...+|.+..|..++......++.+ +..||..+|+     .|||+-..+......+...+.+.++    |+..+.+.
T Consensus       102 ~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-----~grr~~f~~T~l~t~v~~~is~~sp----nf~~L~~f  172 (528)
T KOG0253|consen  102 PALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-----IGRRKGFNLTFLVTGVFGVISGASP----NFASLCVF  172 (528)
T ss_pred             HHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-----hhcchhhhhhHHHHHHHHHhhcCCC----CeehhhHH
Confidence            345567788888999999888888888 8899999999     9999999888888888888888888    99999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVV  163 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~  163 (408)
                      |.+.|+|.|. .|...++-.|..|..+         |+...-.. ..+.+|.++...+.-....++||||.....+.+..
T Consensus       173 ~~l~~~g~gg-~pv~~~~yle~lp~~~---------r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~  241 (528)
T KOG0253|consen  173 RALWGFGVGG-LPVDSAIYLEFLPSSH---------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLM  241 (528)
T ss_pred             HHHHhccCCC-ccHhHHHHHHhccCcC---------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHH
Confidence            9999999998 5555588888888765         55544444 78899999999999888999999999988887776


Q ss_pred             HHHHHhhhcccccccCCCCCcc-------------------------------hhH------------HHHHHHHHHhc-
Q 015348          164 LQFFITIAVRESALKLPKSQSN-------------------------------VGI------------RAQLSELSAAL-  199 (408)
Q Consensus       164 ~~~~~~~~~~e~~~~~~~~~~~-------------------------------~~~------------~~~~~~~~~~~-  199 (408)
                      +.....+.++|+++....+.++                               ++.            |+.-.+...++ 
T Consensus       242 ~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls  321 (528)
T KOG0253|consen  242 FAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS  321 (528)
T ss_pred             HHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC
Confidence            7777777799986531110000                               000            00000011111 


Q ss_pred             ---ccch--hHHHHHHHHhhhc-----------ccc---cccceeEEEEEeccC--CChhhHHHHHHHHHHHHHHHHHHH
Q 015348          200 ---RKPE--IMYSVAWFAASYS-----------IIP---VLTGTMFFYQTQNLK--IRSSVLGISKVFGQAAMLLWGVIY  258 (408)
Q Consensus       200 ---~~~~--~~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~  258 (408)
                         ++..  .|+......+.+.           ...   ..+-..+++.....+  .+...-=.-..+..+....|.++.
T Consensus       322 p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt  401 (528)
T KOG0253|consen  322 PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLIT  401 (528)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHH
Confidence               1111  1111111111000           000   000111111111011  111111122345567888999999


Q ss_pred             HHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhHHHHHHHhcCCchhHHH
Q 015348          259 NSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSI  338 (408)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~  338 (408)
                      +.+.||+|||+.+..+.++.+++.++...   .      ...+. ..........+..+.+...+.+..|+.|...|++.
T Consensus       402 ~~iverlGRKkTMal~l~~f~iflfll~~---c------~~rn~-~tvllf~arafisg~fqvaYvYtPEVyPTavRatg  471 (528)
T KOG0253|consen  402 GVIVERLGRKKTMALSLILFGIFLFLLTT---C------KTRNA-YTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG  471 (528)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHH---h------cCcch-hHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence            99999999999999888888776554321   0      11111 12222222333334444557788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 015348          339 MAFVMSAVALAFIVSGYLG  357 (408)
Q Consensus       339 ~g~~~~~~~lg~~ig~~~~  357 (408)
                      .|..+++..+|+.+.|.++
T Consensus       472 vGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  472 VGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             hhhhhhHHhhhhhhhhHHH
Confidence            9999999999999999988

>PTZ00207 hypothetical protein; Provisional

Probab=99.72  E-value=1.6e-15  Score=142.99  Aligned_cols=156  Identities=14%  Similarity=0.172  Sum_probs=124.0

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC--cchHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS--SISIFTMS   81 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   81 (408)
                      +..+++++|+|..|++++.++.......+++.|+++||     +|||+++.++.++..++.++++++...  ..+++.+.
T Consensus        50 s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr-----~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~  124 (591)
T PTZ00207         50 SGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDY-----LGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS  124 (591)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence            34578999999999999988744333347789999999     999999999999999999999887210  12899999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHH-HHHHHHHHhhcCChhhHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVL-GNLLVGFAIDRFSPPSMFLFFGL  160 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i-g~~l~~~l~~~~g~~~~f~i~~~  160 (408)
                      +.|++.|++.+..++.....+.+++|+          +||++.++.....++|..+ +++..+++.  .+|+..|++.++
T Consensus       125 l~r~l~G~G~~~~~~~~~~~i~~~Fp~----------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~v  192 (591)
T PTZ00207        125 VYNGLMTLGCMLFDLGAVVTVLSVFPS----------NRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMS  192 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHH
Confidence            999999999999988888889999873          4999999999999999976 454444443  468888888888


Q ss_pred             HHHHHHHHhh-hccccc
Q 015348          161 LVVLQFFITI-AVRESA  176 (408)
Q Consensus       161 ~~~~~~~~~~-~~~e~~  176 (408)
                      ..++..+.+. ++++++
T Consensus       193 l~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        193 FALVVGILAIVFMRLPP  209 (591)
T ss_pred             HHHHHHHHHHhheeCCc
Confidence            8777655544 355443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.71  E-value=3.2e-15  Score=137.48  Aligned_cols=304  Identities=14%  Similarity=0.126  Sum_probs=205.6

Q ss_pred             cccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcc
Q 015348           28 PMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAK  107 (408)
Q Consensus        28 ~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~  107 (408)
                      +.+..|+.|.++||     +|||..+........+....+.+..     +| +++.--+.|.. +.......++++|...
T Consensus        75 ~~i~s~~iG~lSD~-----~grk~~L~~~~~~~~l~~~~~~~~~-----~~-~~~~~~l~g~~-~~~~s~~~a~vadis~  142 (463)
T KOG2816|consen   75 TLISSPLIGALSDR-----YGRKVVLLLPLFGTILPALCLLFQG-----YW-FFLLLGLSGGF-SAIFSVGFAYVADISS  142 (463)
T ss_pred             HHHHHhhhHHhhhh-----hhhhhhHHHHHHHHHHhHHHHHHHH-----HH-Hhhhcccccch-hhhhhhhhhheeeccc
Confidence            34448999999999     9999999999888877777666643     33 33322222222 2233344578888887


Q ss_pred             CCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhh-hcccccccCCCC----
Q 015348          108 QPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITI-AVRESALKLPKS----  182 (408)
Q Consensus       108 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~-~~~e~~~~~~~~----  182 (408)
                      +++         |....++.+.....+..++|.+++.+....|.-.+|.+..+..++..+... ++||+..++++.    
T Consensus       143 ~~~---------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~  213 (463)
T KOG2816|consen  143 EEE---------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL  213 (463)
T ss_pred             hhH---------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc
Confidence            764         888899999999999999999999999999999999999998888876654 488875544332    


Q ss_pred             -----Cc--chhHHHHHHHHHHhcccchhHHHHHHHHhhhcccc-cccceeEEEEEeccCCChhhHHHHHHHHHHHHHHH
Q 015348          183 -----QS--NVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIP-VLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLW  254 (408)
Q Consensus       183 -----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~  254 (408)
                           ++  .....+..+...+.-++|..+.+....++...... ......++|....+++++.+.+.+.+.......++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~  293 (463)
T KOG2816|consen  214 RELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIIS  293 (463)
T ss_pred             cccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHH
Confidence                 01  11122333333332334444554444444333222 22325577778889999999998877777777777


Q ss_pred             HHHHH-HhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCC
Q 015348          255 GVIYN-SGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPP  332 (408)
Q Consensus       255 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~  332 (408)
                      ..+.. .+.+..+.++....+..........           +++....|..........+. ....|. .+..+...++
T Consensus       294 ~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~-----------~af~~~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~  361 (463)
T KOG2816|consen  294 QLLLLPLLSSILGEKRLISLGLLSEFLQLLL-----------FAFATETWMMFAAGVVVALA-GIVFPAIRAFASILVSP  361 (463)
T ss_pred             HHHHHHHHHHHHhhhhHhhHHHHHHHHHHHH-----------HHHhccchhhhHHHHHHHhh-cchhHHHHhHHHhhccc
Confidence            66655 6677778888666665555444433           22223333444433333333 334455 8899999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015348          333 GCEGSIMAFVMSAVALAFIVSGYLGVALASYT  364 (408)
Q Consensus       333 ~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~  364 (408)
                      +++|+++++...+..++..++|.+-+.+...+
T Consensus       362 ~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  362 EEQGKVFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             ccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            99999999999999999999999988886554

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.56  E-value=1.4e-13  Score=121.71  Aligned_cols=342  Identities=11%  Similarity=0.006  Sum_probs=218.6

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC--cchHH-
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS--SISIF-   78 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-   78 (408)
                      ++-|.++.+| |....-+..-++.+.++. ...+-|+.|+     +|-|...+++..+.+++..+-..+..+  .+.++ 
T Consensus        67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-----~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~  140 (480)
T KOG2563|consen   67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-----FGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRR  140 (480)
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-----cchHHHHHHHHHHHHHHHHHhhhccCccccccchh
Confidence            4456666677 555555666666654444 6778899999     999999999999999998876555432  12444 


Q ss_pred             -HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC------Ch
Q 015348           79 -TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRF------SP  151 (408)
Q Consensus        79 -~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~------g~  151 (408)
                       .......+.+....+....-.-....|+++++         |..+.+.-.++..+|..+|.++...+..+-      .|
T Consensus       141 ~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q---------ra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~  211 (480)
T KOG2563|consen  141 PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ---------RAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSW  211 (480)
T ss_pred             hhhHHhHHHHHHhhhHhhccccHHHHhhCCcch---------hhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHH
Confidence             56677777777777776665455556777754         898888888888899999988888887653      24


Q ss_pred             hh--HHHHHHHHHHHHHHHhhh-cccccccCCCCC-cchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEE
Q 015348          152 PS--MFLFFGLLVVLQFFITIA-VRESALKLPKSQ-SNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFF  227 (408)
Q Consensus       152 ~~--~f~i~~~~~~~~~~~~~~-~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (408)
                      ..  .|...+.+..+.+....+ .+|+|+.++... ++....+..+.+++.++|+++....+...+....+....+.+..
T Consensus       212 ~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~  291 (480)
T KOG2563|consen  212 LFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNL  291 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhh
Confidence            33  344333333333333333 344333222211 11111235567777899999888777665533333333332221


Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceeh-HHHHHHHHHHHHHhHhhhcccccccCcCceEeehh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLI-SAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLI  306 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (408)
                       ....-|++....|+......+++++++.+.|.+.||.+.-+.. ........+..+....   .    .......+++.
T Consensus       292 -~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~---~----t~~~~~~viv~  363 (480)
T KOG2563|consen  292 -ALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLT---C----TLFLGDSVIVF  363 (480)
T ss_pred             -ccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH---h----hccCCceEehh
Confidence             1122466667889999999999999999999999998754433 3332222222111111   0    01112233455


Q ss_pred             hhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          307 FSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       307 ~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      ......+.+.....|+ .-+..|.+-|..+++-.|+.+..+++-+.+-..+-+...+..+..
T Consensus       364 ~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~  425 (480)
T KOG2563|consen  364 TTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPP  425 (480)
T ss_pred             hhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCC
Confidence            5556666667777888 778888888888999999999998888888888888888776644

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=99.53  E-value=2.7e-13  Score=116.65  Aligned_cols=349  Identities=16%  Similarity=0.181  Sum_probs=207.5

Q ss_pred             chhhhhhhccCCCHHHHHHHHHhhcccccccchheeecccccccCCcchh-HHHHHHHHHHHHHHHHHHhcc-------C
Q 015348            2 AVNFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVP-YIAIGAFLQAVSWLAIAILSQ-------S   73 (408)
Q Consensus         2 ~~~~~l~~~l~~s~~~~g~~~~~~~~~~~~~~~~G~l~Dr~~~~~~grk~-~l~~~~~~~~~~~~~~~~~~~-------~   73 (408)
                      ++++.++ .=|.|.++.+.. +....|+.++.+|.++.|.+++|.+|||| +++-+..+....+.+++...+       .
T Consensus        52 ~iP~lL~-ak~vSyt~~a~f-S~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~  129 (510)
T KOG3574|consen   52 AIPLLLQ-AKGVSYTSQAIF-SFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGG  129 (510)
T ss_pred             hhHHHhc-CCCcchhhhhhh-hhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCC
Confidence            3556664 567888887754 55667999999999999966665577666 555555555555555444332       1


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-----
Q 015348           74 SISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR-----  148 (408)
Q Consensus        74 ~~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~-----  148 (408)
                      ..+...+....++..+..+..+.+.+.+...+.++++         .|-+..    +.++|.-.|..++..+.-.     
T Consensus       130 ~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~---------lgyaST----~q~Vg~~~GyfL~~~ifLaL~s~d  196 (510)
T KOG3574|consen  130 LPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN---------LGYAST----CQSVGQTAGYFLGNVVFLALESPD  196 (510)
T ss_pred             CcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh---------cCchhH----HHHHHHhhhHHhhcceeeEecChh
Confidence            2234444456788899999999999999999988775         676666    5556666666555433211     


Q ss_pred             ------CChh---------hHHHHHHHHHHHHHHHhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHh
Q 015348          149 ------FSPP---------SMFLFFGLLVVLQFFITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAA  213 (408)
Q Consensus       149 ------~g~~---------~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (408)
                            .+|.         .-.++.+.+.++...+..+.+++++++..++.+.+.++..|-++++++-|.+.....+...
T Consensus       197 F~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt  276 (510)
T KOG3574|consen  197 FCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEELELGIHESYKLLRDVLKLKSVRWLAGILLT  276 (510)
T ss_pred             hhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhcCHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence                  1221         2234455555555555445444443332223334567777888888999988877766655


Q ss_pred             hhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCcee----hHHHHHHHHHHHHHhHhhh
Q 015348          214 SYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKL----ISAIQAMMAVFMISDVLFV  289 (408)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  289 (408)
                      .-..+ ...........-+.|++.++.++.........++.....|++..+..+-..    +..-.........+ .+..
T Consensus       277 ~K~gf-~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~L-v~~~  354 (510)
T KOG3574|consen  277 GKLGF-QAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTAL-VWWT  354 (510)
T ss_pred             HHHHh-hhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHH-Hhhh
Confidence            33333 333333334444579999998887766666677777777766542211111    11111111111111 1111


Q ss_pred             ccccccc-CcCceEeehhh--hHHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          290 KGVYREM-GVPDSLYVLIF--SSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       290 ~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ......- .++.....+.+  ..+..++....+...++..+++.||...|+.+.+.|+..|+|+.--..+..++.|.+++
T Consensus       355 ~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv  434 (510)
T KOG3574|consen  355 PTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTV  434 (510)
T ss_pred             cccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCce
Confidence            1111100 11111111111  12222333344445588899999999999999999999999999888999999998775


Q ss_pred             C
Q 015348          367 T  367 (408)
Q Consensus       367 ~  367 (408)
                      .
T Consensus       435 ~  435 (510)
T KOG3574|consen  435 K  435 (510)
T ss_pred             e
Confidence            3

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.51  E-value=4.5e-13  Score=121.80  Aligned_cols=341  Identities=12%  Similarity=0.082  Sum_probs=192.5

Q ss_pred             ccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcc-hhHHHHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHH
Q 015348           10 SLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHR-VPYIAIGAFLQAVSWLAI-AILSQSSISIFTMSLFLLL   86 (408)
Q Consensus        10 ~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~gr-k~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l   86 (408)
                      |.+.+.+..|++.+...++..+ +|..|.+..|     .++ |+-++.+.++..++.++. .+....+...+.++++|++
T Consensus        65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-----~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l  139 (488)
T KOG2325|consen   65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-----TGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARIL  139 (488)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhcchhhcccccc-----cCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            6888999999999999987776 9999999999     553 566778888888888877 3333333478899999999


Q ss_pred             HHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--CC-----------hhh
Q 015348           87 SNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR--FS-----------PPS  153 (408)
Q Consensus        87 ~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~--~g-----------~~~  153 (408)
                      .|+|.+...... +++++....++         |.|+++....+..+|.++||.++..+...  -|           +..
T Consensus       140 ~Gvg~~n~a~lR-~Y~a~~s~~~d---------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTa  209 (488)
T KOG2325|consen  140 TGVGVGNFAVLR-AYIADASTVED---------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTA  209 (488)
T ss_pred             cCcCcccHHHHH-HHHHhccCccc---------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecch
Confidence            999988877666 88888766654         88888888888888888888877665431  11           345


Q ss_pred             HHHHHHHHHHHHHHHh-hhcccccccCCCCCcchhHHHHHHHHHHhcccc--hhHH--HHHHHH-hhhcccccccceeEE
Q 015348          154 MFLFFGLLVVLQFFIT-IAVRESALKLPKSQSNVGIRAQLSELSAALRKP--EIMY--SVAWFA-ASYSIIPVLTGTMFF  227 (408)
Q Consensus       154 ~f~i~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~-~~~~~~~~~~~~~~~  227 (408)
                      +-|+.++..++..+.. ++++|.+++..+++.+++ ++..++ .+..+++  ....  .+++.. ..........+..+.
T Consensus       210 p~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~  287 (488)
T KOG2325|consen  210 PAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV-EEEKSD-IEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSA  287 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhheeecccCccccccccc-hhhccc-hhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            6677777777765544 447887654433211111 000000 0112222  1111  111111 111222222233333


Q ss_pred             EEEeccCCChhh----HHHHHHHHHHHHHHHHHHHHHhh-ccCCCceehHHHHHHHHHHH-HHhHhhhccc-ccc-cC--
Q 015348          228 YQTQNLKIRSSV----LGISKVFGQAAMLLWGVIYNSGL-KSVSPRKLISAIQAMMAVFM-ISDVLFVKGV-YRE-MG--  297 (408)
Q Consensus       228 ~~~~~~g~~~~~----~g~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~-~~--  297 (408)
                      +....++++.++    .|...++.++..+.-........ .++.+|+.+..+.+...... +......... +.. ..  
T Consensus       288 ~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~  367 (488)
T KOG2325|consen  288 LTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTT  367 (488)
T ss_pred             HHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeecccccccccccccc
Confidence            333334443333    33334433333333333333322 33344555544433322221 1111100000 000 00  


Q ss_pred             -----cCce----------Ee-ehhhhHHHHHHHH-HhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          298 -----VPDS----------LY-VLIFSSLLEVMFF-FKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVAL  360 (408)
Q Consensus       298 -----~~~~----------~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l  360 (408)
                           ....          .+ .++...+..|.+. ....+..++.+|+..|..++++.|+++.....+..++|.+...+
T Consensus       368 ~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~  447 (488)
T KOG2325|consen  368 YAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAI  447 (488)
T ss_pred             ccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhh
Confidence                 0000          00 0111111122221 11223578889999999999999999999999999999999988


Q ss_pred             HHhcCCC
Q 015348          361 ASYTGVT  367 (408)
Q Consensus       361 ~~~~g~~  367 (408)
                      ....|.+
T Consensus       448 ~~~~g~~  454 (488)
T KOG2325|consen  448 FTLSGPR  454 (488)
T ss_pred             HHhcCcc
Confidence            8888865

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.50  E-value=1.7e-11  Score=106.67  Aligned_cols=254  Identities=15%  Similarity=0.084  Sum_probs=161.8

Q ss_pred             hhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 015348            7 LKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLL   85 (408)
Q Consensus         7 l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (408)
                      +-+++|++..|++.+.........+ .++.|.++||     +|||+.-+..+++..++++.. ..+    +++.+++.|+
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-----~Grk~~cl~~cily~~scl~k-~~~----~~~~L~~GRv  129 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-----YGRKKACLLFCILYSLSCLTK-HSS----NYPVLLLGRV  129 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCchHHHHHHHHHHHHHHHHH-hcc----ccHHHHHHHH
Confidence            3468999999999999988865554 9999999999     999999999888888888643 345    8999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHH-HHHHHHHHHHHHHHHHHhhcCC--hhhHHHHHHHHH
Q 015348           86 LSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVW-MSSSMGGVLGNLLVGFAIDRFS--PPSMFLFFGLLV  162 (408)
Q Consensus        86 l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~g~~ig~~l~~~l~~~~g--~~~~f~i~~~~~  162 (408)
                      +.|++.+.......+++.....++..++    +..+...+... ...++-.+.+.+++.++.+..+  ...+|.....+.
T Consensus       130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~----~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l  205 (354)
T PF05631_consen  130 LGGIATSLLFSAFESWMVHEHNKRGFPQ----EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLL  205 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHH
Confidence            9999999999999888766544322111    12333333222 2223334445556666666554  478888887777


Q ss_pred             HHHHHHhhh-cccccccCCCCCcchhHHHHHH-HHHHhcccchhHHHHHHHHhhhccccc-ccceeEEEEEeccCCChhh
Q 015348          163 VLQFFITIA-VRESALKLPKSQSNVGIRAQLS-ELSAALRKPEIMYSVAWFAASYSIIPV-LTGTMFFYQTQNLKIRSSV  239 (408)
Q Consensus       163 ~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~  239 (408)
                      .+..+.... .+|...+..++   .+.++..+ ..+.+.+||+++.+.+...+.-..... ...|.|....+   -+..-
T Consensus       206 ~~~~~~I~~~W~ENyg~~~~~---~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~---~~~~P  279 (354)
T PF05631_consen  206 AVAAVLILKTWPENYGDTSSS---SSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPD---DEELP  279 (354)
T ss_pred             HHHHHHHHhcccccCCCcccc---cchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCC---CCCCC
Confidence            776655544 56654432221   11222222 233446789988887777663333222 23333433211   12334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-cCCCceehHHHHHHHHH
Q 015348          240 LGISKVFGQAAMLLWGVIYNSGLK-SVSPRKLISAIQAMMAV  280 (408)
Q Consensus       240 ~g~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~  280 (408)
                      .|++.....++.++|+.+..++.. +......+.....+.++
T Consensus       280 ~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~  321 (354)
T PF05631_consen  280 LGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAV  321 (354)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            789999999999999999876654 43333334333333333

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.47  E-value=4e-13  Score=104.81  Aligned_cols=125  Identities=26%  Similarity=0.395  Sum_probs=110.2

Q ss_pred             cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCc
Q 015348           32 KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMT  111 (408)
Q Consensus        32 ~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~  111 (408)
                      .++.|+++||     +|||+.+..+.....++.+.+...+    +.+.....+++.|++.+...+..++++.|..|+++ 
T Consensus        15 ~~~~g~~~d~-----~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-   84 (141)
T TIGR00880        15 SPLSGLLTDR-----FGRKPVLLVGLFIFVLSTAMFALSS----NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE-   84 (141)
T ss_pred             HhhHHHHHhh-----cchhHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh-
Confidence            7899999999     9999999999888888888888777    88899999999999999999999999999998764 


Q ss_pred             cchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhhh-ccc
Q 015348          112 SSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIA-VRE  174 (408)
Q Consensus       112 ~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~-~~e  174 (408)
                              |++.++..+....+|..+++.+++.+.+..+|++.+++.+...++..+...+ .||
T Consensus        85 --------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        85 --------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             --------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence                    9999999999999999999999999999999999999988877776655544 443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=99.45  E-value=1.8e-11  Score=109.90  Aligned_cols=353  Identities=14%  Similarity=0.135  Sum_probs=201.9

Q ss_pred             chhhhhhh-ccCCCHHHHHHHHHhhcccccccchheeecccccccCCcchh-HHHHHHHHHHHHHHHHHHhcc-------
Q 015348            2 AVNFFLKD-SLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVP-YIAIGAFLQAVSWLAIAILSQ-------   72 (408)
Q Consensus         2 ~~~~~l~~-~l~~s~~~~g~~~~~~~~~~~~~~~~G~l~Dr~~~~~~grk~-~l~~~~~~~~~~~~~~~~~~~-------   72 (408)
                      ++++.+++ .-+.|.+|.|. .++...|+.++++|.++.|-++++++|||| +++-...+.++.++.++....       
T Consensus        22 siPflL~~~~~~~sy~q~~~-fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~~  100 (544)
T PF13000_consen   22 SIPFLLQSMAKKVSYSQQAI-FSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSYNISQWLLFDG  100 (544)
T ss_pred             cchhhhccccCCCChhHhee-eeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHhccchhhcccc
Confidence            45666654 24788888884 466678999999999999999888887776 555555555555555543320       


Q ss_pred             --------Cc-----chHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHH
Q 015348           73 --------SS-----ISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGN  139 (408)
Q Consensus        73 --------~~-----~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~  139 (408)
                              ..     .+...+....++.-+-.+..+.+.+.+.-.+..+++         ++.+......+.++|..++.
T Consensus       101 ~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n---------~~~ASTcqtvG~~~Gyfls~  171 (544)
T PF13000_consen  101 VDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPEN---------VGYASTCQTVGQTAGYFLSF  171 (544)
T ss_pred             cchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhh---------cchHHHHHHhHhhhhHHHHH
Confidence                    00     112234455556777788999999999988887764         77777744444444444443


Q ss_pred             HHHHHHhh-----c--------CC---hhhHHHHHHHHHHHHHHHh-hhcccccccCC----C----------------C
Q 015348          140 LLVGFAID-----R--------FS---PPSMFLFFGLLVVLQFFIT-IAVRESALKLP----K----------------S  182 (408)
Q Consensus       140 ~l~~~l~~-----~--------~g---~~~~f~i~~~~~~~~~~~~-~~~~e~~~~~~----~----------------~  182 (408)
                      .+--.+-+     +        .|   -..-..+.+...++..... ++-+|++..+.    +                +
T Consensus       172 tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (544)
T PF13000_consen  172 TVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDGKSKEISIEYD  251 (544)
T ss_pred             HHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccccccccccccceecc
Confidence            32211111     0        01   1122233344444444443 34455432110    0                0


Q ss_pred             Cc-------chhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHH
Q 015348          183 QS-------NVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWG  255 (408)
Q Consensus       183 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  255 (408)
                      ++       ..+.++..+.+++++|.|++..+.+..+..-..+.. .......-.-+.|++.+..++...+..-..++..
T Consensus       252 ~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a-~da~T~LKLlEkG~~KE~LAl~~li~~P~qii~~  330 (544)
T PF13000_consen  252 ESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQA-NDAVTSLKLLEKGLSKEDLALLVLIDFPFQIILP  330 (544)
T ss_pred             cccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhcccc-chhhhHHHHHHcCCCHHHhHHHHHHhhhHHHHHH
Confidence            00       013455667788899999988888776663333332 2222222333479999999988888777788888


Q ss_pred             HHHHHhhccCCCc---------------------------eehHHHHHHHHHHHHHhHhhhcccccccCcCceEeeh-hh
Q 015348          256 VIYNSGLKSVSPR---------------------------KLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVL-IF  307 (408)
Q Consensus       256 ~~~~~l~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  307 (408)
                      +..+|+.....+.                           +....+...-.+..++....+...+..-..+..++.+ +.
T Consensus       331 ~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~  410 (544)
T PF13000_consen  331 YYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVII  410 (544)
T ss_pred             HHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHH
Confidence            8888876533310                           0111111111111111111111111101112222111 11


Q ss_pred             h-HHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          308 S-SLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       308 ~-~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      . .+........+....++-+++.+|..-|+++.+.|++.|+|+--...+.=++.|.+-
T Consensus       411 ~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT  469 (544)
T PF13000_consen  411 QHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT  469 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence            2 222233344455568899999999999999999999999999888888888888764

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.44  E-value=2.4e-12  Score=118.94  Aligned_cols=153  Identities=11%  Similarity=0.183  Sum_probs=122.6

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      ++.|+++++|.++.+.+.+.+......+. .+++|+++||     ++||+.+..+.+...+....+...+    +.+..+
T Consensus       239 ~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-----~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l  309 (393)
T PRK15011        239 MPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-----LGKRFLMRVAAVAGVCFYAGMLMAH----SPAILL  309 (393)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHHHHHHh----hHHHHH
Confidence            45678889999999999988776654444 7899999999     9999988777666555554444455    677777


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      +.+++.+++.+...+....+..|..|+          +++++++..+...++|..+||.++|.+.+.+||+..|.+.++.
T Consensus       310 ~~~~l~~~~~g~~~~~~~~~~~~~~p~----------~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~  379 (393)
T PRK15011        310 GLQLLNAIYIGILGGIGMLYFQDLMPG----------QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVM  379 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCC----------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            888888888877776666777787763          3888999988889999999999999999999999999998888


Q ss_pred             HHHHHHHhhhccc
Q 015348          162 VVLQFFITIAVRE  174 (408)
Q Consensus       162 ~~~~~~~~~~~~e  174 (408)
                      .++..+..++.||
T Consensus       380 ~~~~~~~~~~~~~  392 (393)
T PRK15011        380 IIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHhhcC
Confidence            8877777766765

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.44  E-value=6.7e-11  Score=107.74  Aligned_cols=337  Identities=18%  Similarity=0.129  Sum_probs=187.2

Q ss_pred             chhhhhhhccCCCHHHHHHHHHhhccc-ccccchheeecccccccCCcchhHHHHHHHHHHHH----HHHHH--HhccCc
Q 015348            2 AVNFFLKDSLNVDPSTLQLLQNSANLP-MVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVS----WLAIA--ILSQSS   74 (408)
Q Consensus         2 ~~~~~l~~~l~~s~~~~g~~~~~~~~~-~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~----~~~~~--~~~~~~   74 (408)
                      +++.++.+-+.-|-.-.+...-...+. .+++|..|.+.||     ..|++.+..+.+..-++    +.+..  +.....
T Consensus        24 a~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-----~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~   98 (432)
T PF06963_consen   24 AVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-----SPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSS   98 (432)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            456666554433333233222222333 3458999999999     88988876664443222    22211  111111


Q ss_pred             c--hHHHHHHHHHHHHHHHHHHHhhHH----H----HHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHH
Q 015348           75 I--SIFTMSLFLLLSNLGASIAEVAND----A----LVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGF  144 (408)
Q Consensus        75 ~--~~~~~~~~~~l~g~~~~~~~~~~~----a----~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~  144 (408)
                      .  +.+.......+.-+..+.......    +    ++..+.++++  .     .+.+.++.+.-.=....+++|++.|.
T Consensus        99 ~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~--~-----~La~~NA~mRRIDL~ckllaPl~vG~  171 (432)
T PF06963_consen   99 SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDP--G-----ALARMNATMRRIDLFCKLLAPLFVGL  171 (432)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCCh--h-----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0  112222222222222222222111    1    2222232222  2     58888998888889999999999999


Q ss_pred             HhhcCChhhHHHHHHHHHHHHHHHhhh--------ccc---ccccCCCCCc--c-------------hhHHHHH----HH
Q 015348          145 AIDRFSPPSMFLFFGLLVVLQFFITIA--------VRE---SALKLPKSQS--N-------------VGIRAQL----SE  194 (408)
Q Consensus       145 l~~~~g~~~~f~i~~~~~~~~~~~~~~--------~~e---~~~~~~~~~~--~-------------~~~~~~~----~~  194 (408)
                      +.+..+.+....+.+...+++...-++        .|+   ++++++++++  +             ++.++..    +.
T Consensus       172 l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (432)
T PF06963_consen  172 LMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRG  251 (432)
T ss_pred             HhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHHHHHHHhcc
Confidence            999899998888888877777543211        121   1111110000  0             0111112    22


Q ss_pred             HHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHH
Q 015348          195 LSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAI  274 (408)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  274 (408)
                      ++..+++|.+...+...++ ++..-.+...+..|... .|+++...|.+-....+.++.+.+...++.+|+|..+.-.++
T Consensus       252 w~~Y~~q~vflas~alalL-Y~TVLsf~~lmt~yl~~-~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~  329 (432)
T PF06963_consen  252 WRTYFRQPVFLASFALALL-YFTVLSFGGLMTAYLKS-QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWS  329 (432)
T ss_pred             HHHHHhCHHHHHHHHHHHH-HHHHhcCcHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence            3445666765555544444 43333333333334443 499999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHhHhhhcccccccCcCceEeehhh---hHHHHHHHHHhhh-hHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 015348          275 QAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF---SSLLEVMFFFKIL-PFSVYIAQVCPPGCEGSIMAFVMSAVALAF  350 (408)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~  350 (408)
                      ......+..+........    +.+........   .....=+|--.+- ....+++|.+|+++||+..|.-++..++-.
T Consensus       330 l~~q~~~L~~~v~~~~~~----~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~  405 (432)
T PF06963_consen  330 LWWQWVCLALCVVSFWAP----GSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFE  405 (432)
T ss_pred             HHHHHHHHHHHHHHHhcC----CCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHH
Confidence            776666544333211111    11101111111   1111112222222 336788999999999999999999999887


Q ss_pred             HHHHHH
Q 015348          351 IVSGYL  356 (408)
Q Consensus       351 ~ig~~~  356 (408)
                      .+.-.+
T Consensus       406 ll~~~~  411 (432)
T PF06963_consen  406 LLSFVL  411 (432)
T ss_pred             HHHHHH
Confidence            765444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.43  E-value=9.1e-15  Score=137.98  Aligned_cols=344  Identities=17%  Similarity=0.155  Sum_probs=2.9

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC-----------
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS-----------   73 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~-----------   73 (408)
                      -++++++++.++.|++.+.+-++..+ .++..++.+|     .+|-|++-.|.++.+++.+++++.+..           
T Consensus        28 tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-----~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~  102 (539)
T PF03137_consen   28 TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-----GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASN  102 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccc
Confidence            36789999999999999999987776 8889999999     888889999999999998887754320           


Q ss_pred             -----------------------------------cchHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhcc
Q 015348           74 -----------------------------------SISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQS  118 (408)
Q Consensus        74 -----------------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~  118 (408)
                                                         ...++.++++.++.|+|.+..++...+++=|.+++++        
T Consensus       103 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~--------  174 (539)
T PF03137_consen  103 SNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN--------  174 (539)
T ss_dssp             -------------------------------------------------SSS----------------------------
T ss_pred             cccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc--------
Confidence                                               0124667788899999999999999999999888764        


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhhc---------------------CC-hhhHHHHHHHHHHHHHHHhhhccccc
Q 015348          119 SSGELQSFVWMSSSMGGVLGNLLVGFAIDR---------------------FS-PPSMFLFFGLLVVLQFFITIAVRESA  176 (408)
Q Consensus       119 ~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~---------------------~g-~~~~f~i~~~~~~~~~~~~~~~~e~~  176 (408)
                       -+...++.+....+|.++|.++++...+.                     .| |..-|++.+...++..+..++.|++-
T Consensus       175 -splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l  253 (539)
T PF03137_consen  175 -SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL  253 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence             67778888889999999998888877642                     12 55556666666666655555554331


Q ss_pred             ccC----------CCCC-----c---c--------hhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEE
Q 015348          177 LKL----------PKSQ-----S---N--------VGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQT  230 (408)
Q Consensus       177 ~~~----------~~~~-----~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (408)
                      +..          ++++     +   +        +..++..+.++++++||.+....+...........+.+..|-|..
T Consensus       254 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE  333 (539)
T PF03137_consen  254 PGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLE  333 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111          0000     0   0        112334456677889998887777777766667777788888888


Q ss_pred             eccCCChhhHHHHHHHH-HHHHHHHHHHHHHhhccCC--CceehHHHHHHHHHHHHH--hHhhhcc-------ccccc--
Q 015348          231 QNLKIRSSVLGISKVFG-QAAMLLWGVIYNSGLKSVS--PRKLISAIQAMMAVFMIS--DVLFVKG-------VYREM--  296 (408)
Q Consensus       231 ~~~g~~~~~~g~~~~~~-~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~--  296 (408)
                      .+++.++....++.... ..+.++|.++.|.+.+|++  .|+......+...+..+.  ..++...       .+..+  
T Consensus       334 ~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~  413 (539)
T PF03137_consen  334 SQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHN  413 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCcccc
Confidence            88999998888775443 4467788888889888875  344444443333332221  1111100       00000  


Q ss_pred             ---------------------------C---cC--ceE-eehhhhHHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHH
Q 015348          297 ---------------------------G---VP--DSL-YVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVM  343 (408)
Q Consensus       297 ---------------------------~---~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~  343 (408)
                                                 +   ..  ... ..++...+...+......|......+.+|+++|+.+.|+..
T Consensus       414 ~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~  493 (539)
T PF03137_consen  414 STSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQW  493 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHH
Confidence                                       0   00  001 11112222233344556677777789999999999999988


Q ss_pred             HHHH-HHHHHHHHHHHHHHHh
Q 015348          344 SAVA-LAFIVSGYLGVALASY  363 (408)
Q Consensus       344 ~~~~-lg~~ig~~~~g~l~~~  363 (408)
                      .+.+ +|..-||++.|.+.|.
T Consensus       494 ~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  494 LIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ---------------------
T ss_pred             HHHHhhcCcchHHHHhHHHhh
Confidence            7765 6778899999999885

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK10054 putative transporter; Provisional

Probab=99.42  E-value=9.8e-13  Score=121.42  Aligned_cols=153  Identities=9%  Similarity=0.070  Sum_probs=109.5

Q ss_pred             chhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHH
Q 015348          202 PEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVF  281 (408)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  281 (408)
                      |+++.+.+..++............+.|..+++|++..+.|+..+...++.++..++.|++.||+|+|+.+..+.....+.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~   86 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASG   86 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Confidence            34455555555544444445555666777789999999999999999999999999999999999999888777666554


Q ss_pred             HHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          282 MISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVAL  360 (408)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l  360 (408)
                      .+...+           .++.+.........+.......|. .++..|..|+++|++.+|+.+...++|..++|.+++.+
T Consensus        87 ~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l  155 (395)
T PRK10054         87 FIAIPL-----------VNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL  155 (395)
T ss_pred             HHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433211           111112222222333333444555 78889999999999999999999999999999999988


Q ss_pred             HHhcCC
Q 015348          361 ASYTGV  366 (408)
Q Consensus       361 ~~~~g~  366 (408)
                      .+ .|.
T Consensus       156 ~~-~g~  160 (395)
T PRK10054        156 VM-QSI  160 (395)
T ss_pred             HH-hcc
Confidence            75 443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.39  E-value=7.9e-12  Score=114.85  Aligned_cols=153  Identities=12%  Similarity=0.213  Sum_probs=124.2

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      ++.|+++++|.++.+.+.+.+........ .++.|+++||     ++||+.+..+.+...+........+    +.+..+
T Consensus       222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-----~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  292 (375)
T TIGR00899       222 MPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-----FGKRRLMLLAALAGVAFYTGLAADN----SLWALL  292 (375)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hcchhHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence            35677788999999999887766543333 7889999999     9999998888776666655555555    777778


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      ..+++.|++.+...+...++..|..|+          ++++.++..+...++|..++|.++|.+.+..||+..|++.++.
T Consensus       293 ~~~~~~g~~~g~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~  362 (375)
T TIGR00899       293 MLQLLNAIFIGILAGIGMLYFQDLMPG----------RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVM  362 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcc----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            888999999888888777888887764          2668899999999999999999999999999999999999888


Q ss_pred             HHHHHHHhhhccc
Q 015348          162 VVLQFFITIAVRE  174 (408)
Q Consensus       162 ~~~~~~~~~~~~e  174 (408)
                      .++..+...++||
T Consensus       363 ~~~~~~~~~~~~~  375 (375)
T TIGR00899       363 LIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHheecC
Confidence            8887776666654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.38  E-value=1.7e-12  Score=117.05  Aligned_cols=168  Identities=11%  Similarity=0.152  Sum_probs=121.0

Q ss_pred             HHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCce
Q 015348          190 AQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRK  269 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~  269 (408)
                      ..+.+..+++.++....++....+.........+ +.+|..++.+-.+...|...+..-.+.++.-++.+++.+|+|+.+
T Consensus       359 ~v~a~~~~~~~s~~~llff~~av~mG~g~~lv~t-FLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~  437 (618)
T KOG3762|consen  359 SVLADVGKVFASPHILLFFFVAVVMGAGVGLVFT-FLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVN  437 (618)
T ss_pred             HHHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHH-HHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccc
Confidence            3445555667887766555444442332222222 235566667777778888888888999999999999999999999


Q ss_pred             ehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHH-hhhhHHHHHHHhcCCchhHHHHHHHHHHH-H
Q 015348          270 LISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFF-KILPFSVYIAQVCPPGCEGSIMAFVMSAV-A  347 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~-~  347 (408)
                      ++..+......-.+.           +..-.++|.+...-++.++... .+..+.++++..+||+.+.++.|+..... .
T Consensus       438 v~~lgLa~~~~Rf~~-----------~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~G  506 (618)
T KOG3762|consen  438 VMYLGLACNVGRFLY-----------YSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHG  506 (618)
T ss_pred             eeeehhhHHHHHHHH-----------HHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcc
Confidence            988777666554443           2222555666667777777754 44455889999999999999999988774 6


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC
Q 015348          348 LAFIVSGYLGVALASYTGVTGD  369 (408)
Q Consensus       348 lg~~ig~~~~g~l~~~~g~~~~  369 (408)
                      +|-.+|.+++|.+.+.+|...+
T Consensus       507 lG~g~GslIGG~~v~~fg~~tt  528 (618)
T KOG3762|consen  507 LGKGLGSLIGGFVVERFGARTT  528 (618)
T ss_pred             cCcchhhhhhhhhheeehhHHH
Confidence            8999999999999999886443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.37  E-value=8e-12  Score=116.11  Aligned_cols=149  Identities=11%  Similarity=0.125  Sum_probs=118.1

Q ss_pred             HHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHH
Q 015348           15 PSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASI   93 (408)
Q Consensus        15 ~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   93 (408)
                      ..+.+...++..+..+. .++.|+++||     +|||+++..+.+...++..+.........+.+.+++.+++.|++.+.
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr-----~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~  324 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKR-----FGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDF  324 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHH
Confidence            35668888877765555 8899999999     99999999999988887766665321111346677789999999999


Q ss_pred             HHhhHHHHHHhhccCCCccchhhccCcchhHHHHH-HHHHHHHHHHHHHHHHHhhc------CChhhHHHHHHHHHHHHH
Q 015348           94 AEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVW-MSSSMGGVLGNLLVGFAIDR------FSPPSMFLFFGLLVVLQF  166 (408)
Q Consensus        94 ~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~g~~ig~~l~~~l~~~------~g~~~~f~i~~~~~~~~~  166 (408)
                      ..+....++.|..|++         +|++.+++.+ ...++|.++||.++|.+.++      +||+..|.+.+++.++..
T Consensus       325 ~~~~~~~~i~~~~p~~---------~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~  395 (418)
T TIGR00889       325 FNISGSVFVEKEVPVH---------IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILA  395 (418)
T ss_pred             HHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence            8888889999999875         4999999997 57889999999999999987      469999998888877776


Q ss_pred             HHhh-hcccccc
Q 015348          167 FITI-AVRESAL  177 (408)
Q Consensus       167 ~~~~-~~~e~~~  177 (408)
                      +... ++||+.+
T Consensus       396 ~l~~~~~~~~~~  407 (418)
T TIGR00889       396 VLFMIFFKYSHN  407 (418)
T ss_pred             HHHHHHhCCccc
Confidence            5544 4776643

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.37  E-value=7.6e-12  Score=115.42  Aligned_cols=148  Identities=11%  Similarity=-0.022  Sum_probs=109.9

Q ss_pred             cchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHH
Q 015348          201 KPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAV  280 (408)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  280 (408)
                      +|+++.+.+..++............++. .++++.++.+.++......+...+..++.|++.||+++|+++..+..+..+
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~   80 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLL   80 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHH
Confidence            3455555555555333222222222222 456788888999999999999999999999999999999999988877766


Q ss_pred             HHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          281 FMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVA  359 (408)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~  359 (408)
                      ..+....         .  ...   ....+..+++.+...|. .+++.|.+|+++|++++|+.+...+++..+||.++|.
T Consensus        81 ~~~~~~~---------~--~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~  146 (393)
T PRK11195         81 GCLLMLF---------G--IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA  146 (393)
T ss_pred             HHHHHHH---------H--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443211         0  111   23345667777778888 8999999999999999999999999999999999999


Q ss_pred             HHHh
Q 015348          360 LASY  363 (408)
Q Consensus       360 l~~~  363 (408)
                      +.+.
T Consensus       147 l~~~  150 (393)
T PRK11195        147 LADP  150 (393)
T ss_pred             HHHH
Confidence            9985

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.36  E-value=4.2e-12  Score=117.08  Aligned_cols=128  Identities=12%  Similarity=0.097  Sum_probs=101.9

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      ...+++|.++.+.++..+...++..++.++.|++.||+|+|+.+..+..+..+..+....           .++.+....
T Consensus        30 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~   98 (385)
T TIGR00710        30 EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL-----------SNNIETLLV   98 (385)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH-----------HccHHHHHH
Confidence            345678999999999999999999999999999999999999988877666655444221           122223444


Q ss_pred             hHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          308 SSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ..+..+++.....+. .+++.|..|+++|++.+|+.+....++..+++.+++.+.+..|.
T Consensus        99 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  158 (385)
T TIGR00710        99 LRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSW  158 (385)
T ss_pred             HHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            455566665555555 88999999999999999999999999999999999999887664

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.35  E-value=2.9e-11  Score=114.99  Aligned_cols=162  Identities=14%  Similarity=0.134  Sum_probs=116.5

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHH-HHHhccCcchHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLA-IAILSQSSISIFTM   80 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~   80 (408)
                      ++.|+++++|.++.+.++......++..+ .++.|+++||     +|||+.+..+.+...++... .....  ..+...+
T Consensus       273 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  345 (490)
T PRK10642        273 MPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-----FGRRPFVILGSVALFVLAIPAFILIN--SNVIGLI  345 (490)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHH
Confidence            34567778899998877776666666555 8889999999     99999888877644433322 22211  1156677


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhhHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRF-SPPSMFLFFG  159 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~-g~~~~f~i~~  159 (408)
                      ++.+++.+++.+.......+++.|.+|++         .|++..+..+....++..++|.+.+++.+.. +|+.++++..
T Consensus       346 ~~~~~~~g~~~~~~~g~~~~~~~~~~p~~---------~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~  416 (490)
T PRK10642        346 FAGLLMLAVILNCFTGVMASTLPAMFPTH---------IRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLM  416 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCc---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence            78888888887777677778888998876         4999888755555666778898888887764 4777777776


Q ss_pred             HHHHHHHHHhhhcccccccCC
Q 015348          160 LLVVLQFFITIAVRESALKLP  180 (408)
Q Consensus       160 ~~~~~~~~~~~~~~e~~~~~~  180 (408)
                      +.+++..+..+++||+++...
T Consensus       417 ~~~~i~~~~~~~~pes~~~~~  437 (490)
T PRK10642        417 VVAVIGLITGVTMKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHHhccccCCCC
Confidence            777666666667899876533

>PRK12382 putative transporter; Provisional

Probab=99.35  E-value=8.5e-12  Score=115.38  Aligned_cols=162  Identities=13%  Similarity=0.068  Sum_probs=113.2

Q ss_pred             chhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHH
Q 015348          202 PEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVF  281 (408)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  281 (408)
                      +.++......++............+.+..+++|.|..+.|+..+...++..++.++.|++.||+|+|+.+..+.+...+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA   94 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence            34444444444433333333444444566779999999999999999999999999999999999999988877665544


Q ss_pred             HHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          282 MISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVAL  360 (408)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l  360 (408)
                      .+....... ..  .....+.+.+....+..+++.....|. .+++.+..|+++|++++|..+...+.+..++|.+++.+
T Consensus        95 ~~~~~~~~~-~~--~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l  171 (392)
T PRK12382         95 GLAYLLAAI-LP--VSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLL  171 (392)
T ss_pred             HHHHHhhhc-cc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            322111000 00  001122234455556677776666665 77888999999999999999999999999999999999


Q ss_pred             HHhcCC
Q 015348          361 ASYTGV  366 (408)
Q Consensus       361 ~~~~g~  366 (408)
                      .+..|+
T Consensus       172 ~~~~g~  177 (392)
T PRK12382        172 HSHFGF  177 (392)
T ss_pred             HhccCh
Confidence            887664

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.33  E-value=1.8e-11  Score=114.54  Aligned_cols=127  Identities=13%  Similarity=0.014  Sum_probs=99.4

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      +.+++|.+..+.|++.+...++..++.++.|++.||+|+|+.+..+.++..+..+....           ..+.+.+...
T Consensus        49 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~  117 (434)
T PRK11663         49 MLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF-----------SSSLWAFALL  117 (434)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH-----------HhHHHHHHHH
Confidence            45568999999999999999999999999999999999999988887776665544221           1222233333


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .+..+++.+...|. ..++.+..|+++|++.+|+.+...++|..+++.+.+.+.+..|+
T Consensus       118 ~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw  176 (434)
T PRK11663        118 WVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGW  176 (434)
T ss_pred             HHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            34445555444455 78889999999999999999999999999999999999887664

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.33  E-value=1.5e-11  Score=113.48  Aligned_cols=127  Identities=14%  Similarity=0.241  Sum_probs=104.6

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      +.+++|.++.+.|+..+...++..++.++.|++.||+|+|+.+..+.++.++..+....           .++.+.+...
T Consensus        46 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~  114 (394)
T PRK10213         46 MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF-----------ANSFSLLLIG  114 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH-----------HChHHHHHHH
Confidence            45678999999999999999999999999999999999999998888887765544221           1233345555


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .+..+++.+...|. ..++.|..|+++|+++.++.....+++..++|.+++.+.+.+|+
T Consensus       115 r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw  173 (394)
T PRK10213        115 RACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGW  173 (394)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence            66677776666677 88889999999999999999999999999999999999988764

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.32  E-value=2.5e-11  Score=113.16  Aligned_cols=156  Identities=11%  Similarity=0.088  Sum_probs=126.8

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      +.|+++.+|.++.+.|++.+...++.++ .++.|++.||     .++++.+..+.+...++.++..+.+    +.+...+
T Consensus       247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~  317 (417)
T PRK10489        247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-----ARPGLLMLLSTLGSFLAVGLFGLMP----MWILAVL  317 (417)
T ss_pred             HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-----cCcchHHHHHHHHHHHHHHHHHccc----hHHHHHH
Confidence            4567677999999999999888776666 7889999999     8888888888777777777776666    7777778


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLV  162 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~  162 (408)
                      ..++.|++.+...+...+++.|..|++         .||+.+++.+...++|..+||.+.|.+.+..|++..+++.+...
T Consensus       318 ~~~~~g~~~~~~~~~~~~~~~~~~p~~---------~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~  388 (417)
T PRK10489        318 CLALFGYLSAISSLLQYTLLQTQTPDE---------MLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGL  388 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCHH---------HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence            888899998888887778888888865         49999999999999999999999999999999999988877766


Q ss_pred             HHHHH-Hhhhcccccc
Q 015348          163 VLQFF-ITIAVRESAL  177 (408)
Q Consensus       163 ~~~~~-~~~~~~e~~~  177 (408)
                      ++... ....++|.++
T Consensus       389 ~~~~~~~~~~~~~~~~  404 (417)
T PRK10489        389 LIIGVLLLLVLGELRR  404 (417)
T ss_pred             HHHHHHHHHhcccccc
Confidence            65544 3444666544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.32  E-value=1.4e-11  Score=113.40  Aligned_cols=128  Identities=13%  Similarity=0.083  Sum_probs=103.0

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      ...+++|.+..+.|+..+...++..++.++.|++.||+|+|+.+..+..+.++..+...           ..++.+.+..
T Consensus        28 ~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~-----------~~~~~~~l~~   96 (382)
T PRK10091         28 ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT-----------LSSSYLMLAI   96 (382)
T ss_pred             HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH-----------HhCcHHHHHH
Confidence            35667899999999999999999999999999999999999999888877776654422           1233334555


Q ss_pred             hHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          308 SSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ..+..+++.+...+. ...+.+..|+++|++.++.......++..++|.+++.+.+..|+
T Consensus        97 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  156 (382)
T PRK10091         97 GRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSW  156 (382)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccH
Confidence            566677766655566 77788999999999999999999999999999999999886654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.31  E-value=9.5e-12  Score=115.08  Aligned_cols=134  Identities=14%  Similarity=0.116  Sum_probs=105.0

Q ss_pred             cccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcC
Q 015348          220 VLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP  299 (408)
Q Consensus       220 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (408)
                      ......+.|+.+++|.++.+.|+......+...+..++.|++.||+++|+.+..+.....+..+....           .
T Consensus        28 ~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~-----------~   96 (400)
T PRK11646         28 VVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI-----------A   96 (400)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH-----------h
Confidence            33444455567789999999999999999999999999999999999999998887777766554221           1


Q ss_pred             ceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          300 DSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      ++.+.+....+..+++.+...|. .+++.+..|+++|++++|+.+...++|..+||.++|.+. ..|
T Consensus        97 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g  162 (400)
T PRK11646         97 HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD  162 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence            22333444555566666555566 788899999999999999999999999999999999998 444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.31  E-value=2.8e-11  Score=112.21  Aligned_cols=149  Identities=16%  Similarity=0.164  Sum_probs=118.2

Q ss_pred             ccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Q 015348           10 SLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSN   88 (408)
Q Consensus        10 ~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g   88 (408)
                      +.|.+  +.+...+...+..+. .++.|++.||     ++||+.+..+.....++..+....+    +.+..++..++.|
T Consensus       245 ~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G  313 (399)
T PRK05122        245 ARGWD--GAALALTLFGVAFVGARLLFGNLINR-----LGGLRVAIVSLLVEILGLLLLWLAP----SPWMALIGAALTG  313 (399)
T ss_pred             Hcccc--cchHHHHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHH
Confidence            34553  334444555555555 7889999999     9999999888888888877777776    7777888899999


Q ss_pred             HHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHH
Q 015348           89 LGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFI  168 (408)
Q Consensus        89 ~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~~~  168 (408)
                      ++.+...+...+...|..|++         +|++..+.++....+|..+++.+.|.+.+..||+..|++.+...++..+.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~---------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  384 (399)
T PRK05122        314 FGFSLVFPALGVEAVKRVPPQ---------NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLAL  384 (399)
T ss_pred             HhHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            999988887777777877654         49999999999999999999999999999999999999988888877766


Q ss_pred             hhhccccccc
Q 015348          169 TIAVRESALK  178 (408)
Q Consensus       169 ~~~~~e~~~~  178 (408)
                      ..++++++++
T Consensus       385 ~~~~~~~~~~  394 (399)
T PRK05122        385 TWLLYRRAPR  394 (399)
T ss_pred             HHHhcccccc
Confidence            6666554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.31  E-value=1.7e-11  Score=114.37  Aligned_cols=147  Identities=12%  Similarity=0.106  Sum_probs=119.4

Q ss_pred             CCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Q 015348           12 NVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLG   90 (408)
Q Consensus        12 ~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   90 (408)
                      +.+..+.|.+.++..+.... .+++|+++||     +|||+.+..+..+..++.++.++.+    +++.++..+++.+++
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~~~~~~~~~~l~~~~~~l~~~~~----~~~~~~~~~~l~g~~  328 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINR-----IGAKNALLLAGTIMAVRIIGSGFAT----GPLEVSILKLLHAFE  328 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcchhhHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHH
Confidence            66778889888888765555 8899999999     9999999998888888888888877    888888899999999


Q ss_pred             HHHHHhhHHHHHHhhccCCCccchhhccCcchhHHH-HHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHh
Q 015348           91 ASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSF-VWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFIT  169 (408)
Q Consensus        91 ~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~  169 (408)
                      .+...+....++.+..|++         .+++..+. .+....+|.++++.+.|++.+..||+..|.+.+++.++..+..
T Consensus       329 ~~~~~~~~~~~~~~~~~~~---------~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~  399 (420)
T PRK09528        329 VPFLLVGVFKYITLNFDVR---------LSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLIS  399 (420)
T ss_pred             HHHHHHHHHHHHHHHcCcc---------ceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence            8888777778888888764         36665544 5667889999999999999999999999999888877665554


Q ss_pred             hh-ccccc
Q 015348          170 IA-VRESA  176 (408)
Q Consensus       170 ~~-~~e~~  176 (408)
                      ++ .++++
T Consensus       400 ~~~~~~~~  407 (420)
T PRK09528        400 VFTLSGDR  407 (420)
T ss_pred             HHHhcCCc
Confidence            44 55443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.30  E-value=2.3e-11  Score=110.49  Aligned_cols=150  Identities=27%  Similarity=0.359  Sum_probs=133.3

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchh-HHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVP-YIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      +.+.++.+|.++.+.+...+...+...+ .++.|+++||     +|||+ .+..+..+..++.+.....+    +.+...
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~  269 (352)
T cd06174         199 PLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-----LGRRRLLLLIGLLLAALGLLLLALAP----SLALLL  269 (352)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHhc----cHHHHH
Confidence            4566666799999999999998876666 8999999999     99999 99999999999998888887    788899


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      +..++.|++.+...+...+++.|..|++         +|++.++..+...++|..+++.+.+.+.+..+|+..+.+.+++
T Consensus       270 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~  340 (352)
T cd06174         270 VALLLLGFGLGFAFPALLTLASELAPPE---------ARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL  340 (352)
T ss_pred             HHHHHHHHHHhccchhHHHHHHhhcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHH
Confidence            9999999999999999999999998875         4999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhh
Q 015348          162 VVLQFFITIA  171 (408)
Q Consensus       162 ~~~~~~~~~~  171 (408)
                      .++..+...+
T Consensus       341 ~~i~~i~~~~  350 (352)
T cd06174         341 ALLAALLLLL  350 (352)
T ss_pred             HHHHHHHhee
Confidence            8887665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.30  E-value=6.8e-12  Score=114.15  Aligned_cols=128  Identities=18%  Similarity=0.166  Sum_probs=104.9

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      +..+++|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+.++..+..+...+ .         ++.+ .+..
T Consensus        22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-~---------~~~~-~~~~   90 (352)
T PF07690_consen   22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF-A---------SNFW-LLLI   90 (352)
T ss_dssp             HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-H---------CCHH-HHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh-h---------hhHH-HHhh
Confidence            456778999999999999999999999999999999999999888887777776333221 0         1223 5666


Q ss_pred             hHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          308 SSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ..+..+++.....|. ..++.|..|+++|++.+|+.+...++|..++|.+++.+.+..|.
T Consensus        91 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~  150 (352)
T PF07690_consen   91 ARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW  150 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred             hccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence            677778877666777 89999999999999999999999999999999999999877664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.28  E-value=5.4e-11  Score=110.64  Aligned_cols=136  Identities=11%  Similarity=0.167  Sum_probs=111.5

Q ss_pred             HHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHh
Q 015348           18 LQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEV   96 (408)
Q Consensus        18 ~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   96 (408)
                      .+.+.+...+...+ .+.+|+++||     ++||+.+..+.....++.+...+.+    +.+.+.+.+++.|++.+...+
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr-----~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~  330 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDR-----IGPEKILITALIFSVLLLIPMSFVQ----TPLQLGILRFLLGAADGALLP  330 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-----cccchhHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHhhhHhhHH
Confidence            34444444444444 7889999999     9999999988887777777666666    788888899999999999888


Q ss_pred             hHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhhh
Q 015348           97 ANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIA  171 (408)
Q Consensus        97 ~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  171 (408)
                      ...+.+.+..+++         ++|+.++..+....+|..+||.++|.+.+..||+..|.+.+++.++..+..++
T Consensus       331 ~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        331 AVQTLLVYNSSNQ---------IAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHHHhCCcc---------cceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            8888887777664         48999999999999999999999999999999999999999888887666554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.28  E-value=3.7e-11  Score=113.61  Aligned_cols=153  Identities=8%  Similarity=0.008  Sum_probs=109.6

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      ++.|+++++|.|+.+.++..+...+..++ .+++|+++||     ++||+.+........++.....+..  ..+.+...
T Consensus       281 ~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-----~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  353 (467)
T PRK09556        281 SPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-----ANGRRALVACIALALIIFTLGVYQH--ATSEYMYL  353 (467)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCchHHHHHHHHHHHHHHHHHHh--cCcHHHHH
Confidence            35688889999999999998888766666 9999999999     8888876655443333322222221  11565666


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHH-HHHHHHHHHHHHhh------------c
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSM-GGVLGNLLVGFAID------------R  148 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~ig~~l~~~l~~------------~  148 (408)
                      +.+++.|+..............|..|++         .+|++.++.+...++ |..++|.+.|.+.+            .
T Consensus       354 ~~~~~~G~~~~~~~~~~~~~~~~~~p~~---------~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~  424 (467)
T PRK09556        354 ASLFALGFLVFGPQLLIGVAAVGFVPKK---------AIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTL  424 (467)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcchh---------hHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccc
Confidence            7777777543222222235666888875         499999999999886 77999999999999            5


Q ss_pred             CChhhHHHHHHHHHHHHHHHhhh
Q 015348          149 FSPPSMFLFFGLLVVLQFFITIA  171 (408)
Q Consensus       149 ~g~~~~f~i~~~~~~~~~~~~~~  171 (408)
                      .||+..|++..+..++..+..++
T Consensus       425 ~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        425 TGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHH
Confidence            78999999887777776555444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.28  E-value=3.9e-11  Score=111.49  Aligned_cols=125  Identities=16%  Similarity=0.199  Sum_probs=103.5

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      ...+++|.+..+.|+..+...++..++.+..|++.||+|+|+.+..+.++..+..+...+           .++...+..
T Consensus        33 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~  101 (412)
T TIGR02332        33 TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMF-----------ATGPESLYL  101 (412)
T ss_pred             hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-----------hcCHHHHHH
Confidence            567789999999999999999999999999999999999999988887777666554221           133334555


Q ss_pred             hHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          308 SSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                      ..+..+++.+...|. ..++.|..|+++|++..|+.+....+|..+++.+++.+.+.
T Consensus       102 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  158 (412)
T TIGR02332       102 LRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL  158 (412)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            667778887777777 67889999999999999999999999999999999988753

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.27  E-value=4.9e-11  Score=116.49  Aligned_cols=137  Identities=17%  Similarity=0.125  Sum_probs=114.4

Q ss_pred             HHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHhhHHH
Q 015348           22 QNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDA  100 (408)
Q Consensus        22 ~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~a  100 (408)
                      ..+..+..+. .++.|+++||     +|||++++++.++.+++.+++++.+    +...+++.+++.+++.+...+...+
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr-----~GRr~~l~~~~~lsai~~ll~~~~~----s~~~ll~~~~l~g~~~~~~~~~~~a  671 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDK-----IGRLRMLAGSMVLSCISCFFLSFGN----SESAMIALLCLFGGLSIAAWNALDV  671 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHHHc----cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555 7899999999     9999999999999999988888887    7777788888888888878888889


Q ss_pred             HHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhhhcccccc
Q 015348          101 LVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESAL  177 (408)
Q Consensus       101 ~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~e~~~  177 (408)
                      +++|+.|.+.         |++.+++.+....+|.++||.+++.+.+. +...+|++.+++.++..++..++||++.
T Consensus       672 ~~aEl~Pt~~---------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       672 LTVELYPSDK---------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             HHHHHcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            9999999864         99999999999999999999999988764 5677888888887777777777887654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.27  E-value=1.3e-11  Score=112.91  Aligned_cols=130  Identities=12%  Similarity=0.094  Sum_probs=101.4

Q ss_pred             eccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHH
Q 015348          231 QNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSL  310 (408)
Q Consensus       231 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (408)
                      ++.+.++.+.|+..+...++.+++.++.|++.||+|+|+.+..+..+..+..........     . ...+.+.+....+
T Consensus        27 ~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~  100 (365)
T TIGR00900        27 LAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL-----L-GGLNIWQVYVLAG  100 (365)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH-----c-CCCcHHHHHHHHH
Confidence            447889999999999999999999999999999999999988877666555443221100     0 0012234445556


Q ss_pred             HHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          311 LEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       311 ~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ..+++.....|. .+++.|..|+++|++.+|..+...++|..++|.+++.+.+..|.
T Consensus       101 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~  157 (365)
T TIGR00900       101 ILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI  157 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            666766666666 88999999999999999999999999999999999999987764

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.27  E-value=2.8e-11  Score=115.16  Aligned_cols=128  Identities=9%  Similarity=-0.082  Sum_probs=102.7

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      ..+++|.+..+.++....+.++.....+..|++.||+|+|+.+..+..+..+..+...           ..++.+.++..
T Consensus        32 i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~-----------~a~~~~~li~~  100 (495)
T PRK14995         32 LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAA-----------FSPTASWLIAT  100 (495)
T ss_pred             HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-----------HcCCHHHHHHH
Confidence            4566899999999999999999999999999999999999999988877776655422           22334455566


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHh-cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          309 SLLEVMFFFKILPF-SVYIAQV-CPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~-~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      ....+++.+...|. ...+.+. .|+++|++.+|+.....++|..+||.++|.+.++.|++
T Consensus       101 r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr  161 (495)
T PRK14995        101 RALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWG  161 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Confidence            67777777767776 5556555 57799999999999999999999999999999887653

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.26  E-value=3e-11  Score=112.18  Aligned_cols=126  Identities=6%  Similarity=0.009  Sum_probs=101.9

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      ..+++|.+..+.++..+...++..++.++.|++.||+|+|+.+..+.++..+..+....           ..+.+.+...
T Consensus        38 l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~  106 (405)
T TIGR00891        38 VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGF-----------APGYITMFIA  106 (405)
T ss_pred             HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHH
Confidence            45678999999999999999999999999999999999999988877666665444221           1223344455


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      .+..+++.+...+. .+++.|..|+++|++..++.+....+|..+++.+++.+.+..+
T Consensus       107 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  164 (405)
T TIGR00891       107 RLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            66667776666666 8889999999999999999999999999999999999988765

>PRK03545 putative arabinose transporter; Provisional

Probab=99.26  E-value=1.1e-10  Score=107.80  Aligned_cols=148  Identities=13%  Similarity=0.058  Sum_probs=114.8

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHH-HHHhccCcchHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLA-IAILSQSSISIFTMS   81 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (408)
                      ..|++++.|.|+.+.+.+.+...+..+. +++.|+++||     ++||+... +.....++... ....+    +.+.++
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-----~~~~~~~~-~~~~~~~~~~~l~~~~~----~~~~~~  298 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-----HPSGFLLI-AIALLLVCLLLLLPAAN----SEWHLS  298 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-----cchhHHHH-HHHHHHHHHHHHHHHhc----hHHHHH
Confidence            3456777899999999998887766555 8899999999     88876544 43333333333 33444    677778


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      +..++.|++.+...+...+.+.+..|+          +|+++++..+....+|..+||.++|.+.+++|++..|++.+.+
T Consensus       299 ~~~~l~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~  368 (390)
T PRK03545        299 VLSIFWGIAIMCIGLAMQVKVLKLAPD----------ATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAAL  368 (390)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHhCCC----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHH
Confidence            888888998877767666777776553          3889999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhh
Q 015348          162 VVLQFFITIA  171 (408)
Q Consensus       162 ~~~~~~~~~~  171 (408)
                      .++..+....
T Consensus       369 ~~~~~~~~~~  378 (390)
T PRK03545        369 ALAALVWSIL  378 (390)
T ss_pred             HHHHHHHHHH
Confidence            8877666554

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.25  E-value=4.7e-12  Score=112.15  Aligned_cols=131  Identities=24%  Similarity=0.274  Sum_probs=102.6

Q ss_pred             hhhhhccCCCHHHHHHHHHhhc-ccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC---------c
Q 015348            5 FFLKDSLNVDPSTLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS---------S   74 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~---------~   74 (408)
                      .|+ +++|++....+.+....- .+.+++|+.|..+||+++|+.||||.+..+.....++.+++.++.+-         .
T Consensus        57 Pyl-~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~  135 (498)
T KOG0637|consen   57 PYL-QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERK  135 (498)
T ss_pred             HHH-HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccc
Confidence            344 567777777776666555 55666999999999999999999999999999999999888876641         1


Q ss_pred             ----chHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHH
Q 015348           75 ----ISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGF  144 (408)
Q Consensus        75 ----~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~  144 (408)
                          ......++...+.-+...+.+.+..+++.|....+++        +-++++++.....+|.++|..++++
T Consensus       136 ~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~--------~~~Ans~f~~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  136 PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK--------KTRANSVFSFFMAVGNVLGYALGSY  201 (498)
T ss_pred             ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh--------hhccchhHHHHHHhcceeeeecccc
Confidence                2345566667777788888888888999999987662        2228999999999999999988873

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.25  E-value=5.1e-11  Score=109.10  Aligned_cols=133  Identities=13%  Similarity=0.067  Sum_probs=101.7

Q ss_pred             ccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCc
Q 015348          221 LTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPD  300 (408)
Q Consensus       221 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (408)
                      .....+.+..+++|.|+.+.++......++..++.++.|++.||+|+|+.+..+.++..+..+....           ..
T Consensus        20 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~-----------~~   88 (366)
T TIGR00886        20 FSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL-----------AV   88 (366)
T ss_pred             hHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-----------Hh
Confidence            3344444567789999999999999999999999999999999999999988887777666544221           11


Q ss_pred             -eEeehhhhHHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015348          301 -SLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYT  364 (408)
Q Consensus       301 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~  364 (408)
                       +.+.+....+..+++.....+...++.+..|+++|++..++.....++|..+++.+++.+.+..
T Consensus        89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  153 (366)
T TIGR00886        89 QSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL  153 (366)
T ss_pred             hhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence             2223444455556655444455778899999999999999999999999999998888777643

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.25  E-value=1e-10  Score=108.13  Aligned_cols=127  Identities=14%  Similarity=0.039  Sum_probs=103.9

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      ..+++|.+..+.+++.....++..++.++.|++.||+|+|+.+..+.++..+.......           ..+.+.+...
T Consensus        20 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~   88 (399)
T TIGR00893        20 LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF-----------AGAYVSLYIL   88 (399)
T ss_pred             HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH-----------HcCHHHHHHH
Confidence            45668999999999999999999999999999999999999998887766665444221           1233345555


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .+..+++.+...|. ..++.|..|+++|++.+++.+...++|..+++.+++.+.+..++
T Consensus        89 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  147 (399)
T TIGR00893        89 RVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSW  147 (399)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCc
Confidence            66677777666666 88999999999999999999999999999999999998887664

>PRK03699 putative transporter; Provisional

Probab=99.24  E-value=7.4e-11  Score=109.09  Aligned_cols=152  Identities=13%  Similarity=0.070  Sum_probs=118.8

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      ++.|+++++|.|+.+.+.+.+...+...+ .++.|+++||     ++||+.+.....+..+...+....+    +.+.+.
T Consensus       228 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-----~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~  298 (394)
T PRK03699        228 VPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-----FDLQRILTVLAGLALVLMYLFVNTD----DPSHLL  298 (394)
T ss_pred             HHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-----hchhhHHHHHHHHHHHHHHHHHHcC----CchHHH
Confidence            35678888999999999998887766666 8899999999     9999988877776666665555555    666666


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      ...++.|++.+...+...+...+..|+          .+++..+.......+|..++|.+.|.+.+..|++..++..+++
T Consensus       299 ~~~~~~G~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~  368 (394)
T PRK03699        299 YAILGLGFFSSAIYTTIITLGSQQTKV----------ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGL  368 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccC----------CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHH
Confidence            677788887777766666666666553          2556677888888999999999999999999999999988888


Q ss_pred             HHHHHHHhhhcc
Q 015348          162 VVLQFFITIAVR  173 (408)
Q Consensus       162 ~~~~~~~~~~~~  173 (408)
                      ..+..+.+...+
T Consensus       369 ~~~~~~~~~~~~  380 (394)
T PRK03699        369 YAVVFVMCILLG  380 (394)
T ss_pred             HHHHHHHHHHHH
Confidence            777766555433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.24  E-value=1.8e-10  Score=106.10  Aligned_cols=146  Identities=14%  Similarity=0.176  Sum_probs=123.0

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      +.|++ |+|.|+.++|.+.+...+..+. .++.|++.||     +|+|+.+.++.+...+...++++.+    +.+.++.
T Consensus       229 ~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-----~g~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~  298 (382)
T TIGR00902       229 AIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQN-----CSARDLLLISAIACVGRWAIIGAIE----AFPLIFL  298 (382)
T ss_pred             HHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-----CCHHHHHHHHHHHHHHHHHHHHhHh----hHHHHHH
Confidence            45664 5999999999998876666665 7889999999     9999999999999999999998888    9999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHH-HHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVW-MSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      ...+.|+..+...+....++.+. |++         ++++.++.++ ....+|..+|+.++|.+.++.|+ ..|++.+.+
T Consensus       299 ~q~l~g~~~~~~~~~~~~~i~~~-~~~---------~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~  367 (382)
T TIGR00902       299 LQILHCGTFAVCHLAAMRYIAAQ-PGS---------EIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAII  367 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHH
Confidence            99999999999999988888876 543         4788899876 56789999999999999999996 667777777


Q ss_pred             HHHHHHHhh
Q 015348          162 VVLQFFITI  170 (408)
Q Consensus       162 ~~~~~~~~~  170 (408)
                      .++..+...
T Consensus       368 ~~~~~~~~~  376 (382)
T TIGR00902       368 AAAAFFLIP  376 (382)
T ss_pred             HHHHHHHHH
Confidence            776654443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.24  E-value=7.8e-11  Score=108.96  Aligned_cols=126  Identities=8%  Similarity=-0.006  Sum_probs=97.5

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      ..+++|.+..+.++..+...++..++.++.|++.||+|+|+.+..+.....+.......           ..+.+.....
T Consensus        29 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~-----------~~~~~~~~~~   97 (392)
T PRK10473         29 IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL-----------AETSSLFLAG   97 (392)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH-----------hCcHHHHHHH
Confidence            45668999999999999999999999999999999999999888877666655444221           1122233334


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      .+..+++.....+. .+++.|..|+++|++..+..+...+++..++|.+++.+.+..|
T Consensus        98 ~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g  155 (392)
T PRK10473         98 RFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP  155 (392)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            45556655544554 7889999999999999999999999999999999998877655

>PRK11043 putative transporter; Provisional

Probab=99.23  E-value=8.2e-11  Score=109.17  Aligned_cols=127  Identities=15%  Similarity=0.132  Sum_probs=97.9

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      ..+++|.++.+.++..+...++..++.++.|++.||+++|+.+..+..+..+..+....           .++.+.+...
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~  100 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW-----------VESAAQLLVL  100 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH-----------hcCHHHHHHH
Confidence            45678999999999999999999999999999999999999988777666554443221           1222233444


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .+..+++.....+. ..++.|..|++++++.++..+...+++..++|.+++.+.+..|+
T Consensus       101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~  159 (401)
T PRK11043        101 RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGW  159 (401)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence            45555554444444 67888999999999999999999999999999999999987664

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.23  E-value=1.5e-10  Score=106.52  Aligned_cols=126  Identities=12%  Similarity=0.146  Sum_probs=100.2

Q ss_pred             EeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhH
Q 015348          230 TQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSS  309 (408)
Q Consensus       230 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
                      .+++|.++.+.++..+...++..++.++.|++.||+|+|+.+..+.+...+.......           .++.+......
T Consensus        18 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~   86 (377)
T PRK11102         18 AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL-----------AQTIDQLIYMR   86 (377)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH-----------HccHHHHHHHH
Confidence            3558999999999999999999999999999999999999988887776665544221           12222344445


Q ss_pred             HHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          310 LLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       310 ~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      +..+++.....+. .+++.|..|+++|++..++.+....+|..++|.+++.+.+..|.
T Consensus        87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  144 (377)
T PRK11102         87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSW  144 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence            5556665555555 88899999999999999999999999999999999999987664

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.23  E-value=4e-11  Score=105.68  Aligned_cols=131  Identities=13%  Similarity=0.050  Sum_probs=109.5

Q ss_pred             EEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeeh
Q 015348          226 FFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVL  305 (408)
Q Consensus       226 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (408)
                      .+...++.++|.++.|++.+...++--++.++.|.++||.+.|+.+..+.++.++..++           +++.++.+.+
T Consensus        52 ~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil-----------~Gfs~s~~~~  120 (448)
T COG2271          52 MPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNIL-----------FGFSPSLFLF  120 (448)
T ss_pred             cHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHH-----------HhhhhHHHHH
Confidence            34456678899999999999999999999999999999999999999999999888777           4555555555


Q ss_pred             hhhHHHHHHHHH-hhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCC
Q 015348          306 IFSSLLEVMFFF-KILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLG--VALASYTGVT  367 (408)
Q Consensus       306 ~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~--g~l~~~~g~~  367 (408)
                      .......+..++ .+.|+...+.+-.|+++||+..|+.|+..|+|+.+.|.+.  +.+.++.+..
T Consensus       121 ~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~  185 (448)
T COG2271         121 AVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWR  185 (448)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchh
Confidence            556666676664 4556688899999999999999999999999999999988  8888776543

>TIGR00895 2A0115 benzoate transport

Probab=99.23  E-value=1.8e-11  Score=113.33  Aligned_cols=130  Identities=13%  Similarity=0.205  Sum_probs=102.5

Q ss_pred             EEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehh
Q 015348          227 FYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLI  306 (408)
Q Consensus       227 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (408)
                      ++..+++|.+..+.++......++.+++.++.+++.||+++|+.+..+..+..+..+....           ..+.+.+.
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~  109 (398)
T TIGR00895        41 PAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL-----------ATNVTQLL  109 (398)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------ccchHHHH
Confidence            3455668999999999999999999999999999999999999888877666655444221           12222344


Q ss_pred             hhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          307 FSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       307 ~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      ...+..+++.....|. .+++.|..|+++|++..|+.+...++|..+++.+++.+.+..|..
T Consensus       110 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~  171 (398)
T TIGR00895       110 ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR  171 (398)
T ss_pred             HHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce
Confidence            4455566665555565 889999999999999999999999999999999999999877654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.23  E-value=1.8e-10  Score=104.88  Aligned_cols=128  Identities=16%  Similarity=0.108  Sum_probs=96.0

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      ..+++|.++.+.|+..+...++..++.+..|++.||+|||+.+..+...... ......          ...+...+...
T Consensus        17 i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~-~~~~~~----------~~~~~~~l~~~   85 (368)
T TIGR00903        17 VAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAA-AAGRLL----------DPFNYEWLLAC   85 (368)
T ss_pred             HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH-HHHHHH----------HhccHHHHHHH
Confidence            4556899999999999999999999999999999999988765443332222 211111          10123345556


Q ss_pred             HHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          309 SLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      -+..+++.+...+......|..|+++|+++.++.+....+|..+++.+++.+.+..|++
T Consensus        86 R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr  144 (368)
T TIGR00903        86 QLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQ  144 (368)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence            66677776655555666789999999999999999999999999999999999876653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.22  E-value=1.2e-10  Score=103.74  Aligned_cols=150  Identities=19%  Similarity=0.230  Sum_probs=121.9

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      ..+++|.|....|.+.+.++.+..++.++...+.+|++||+++.....+..+..+...           ...++..+...
T Consensus        39 iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~a-----------lAp~f~~Ll~a  107 (394)
T COG2814          39 IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSA-----------LAPSFAVLLLA  107 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHH-----------HhccHHHHHHH
Confidence            4566999999999999999999999999999999999999999888888777765532           23455567777


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHhhhhh
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTIL  387 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  387 (408)
                      -+..++..+.+.+. .+...+++||++|+++.++..+-..++..+|..++.++.|.+|++..+       ..+..+..+.
T Consensus       108 R~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F-------~~ia~l~ll~  180 (394)
T COG2814         108 RALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF-------LAIAVLALLA  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHH-------HHHHHHHHHH
Confidence            88888888888888 899999999999999999999999999999999999999999976432       2333333333


Q ss_pred             hhhhhhccC
Q 015348          388 PLYWSYFMP  396 (408)
Q Consensus       388 ~~~~~~~~~  396 (408)
                      .+.....+|
T Consensus       181 ~~~~~~~lP  189 (394)
T COG2814         181 LLLLWKLLP  189 (394)
T ss_pred             HHHHHHhCC
Confidence            344455677

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.22  E-value=1.4e-09  Score=97.39  Aligned_cols=315  Identities=11%  Similarity=0.088  Sum_probs=191.3

Q ss_pred             hhhhhhc-cCCCHHHHHHHH-Hhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHH
Q 015348            4 NFFLKDS-LNVDPSTLQLLQ-NSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTM   80 (408)
Q Consensus         4 ~~~l~~~-l~~s~~~~g~~~-~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (408)
                      ..|+.+. .|++..|+.--. -...-+++. ..+...+.|.     .|.||+++++.+...+...++.+.+    +.+.+
T Consensus        27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-----l~Ykpviil~~~~~i~t~~lll~~~----sv~~m   97 (412)
T PF01770_consen   27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-----LRYKPVIILQALSYIITWLLLLFGT----SVLAM   97 (412)
T ss_pred             hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHC----cHHHH
Confidence            3455554 899998875321 111122333 5678899999     9999999999999999999988988    99999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh--cCChhhHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID--RFSPPSMFLFF  158 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~--~~g~~~~f~i~  158 (408)
                      -+.-+..|++.+. ..+..+++-...|+++         .-++.+....+..+|..++.++|-.+..  ..+++....+.
T Consensus        98 q~~q~~yg~~~a~-evay~sYiys~v~~~~---------yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~is  167 (412)
T PF01770_consen   98 QLMQFFYGLATAA-EVAYYSYIYSVVDKEH---------YQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYIS  167 (412)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHheeecCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            9999999998887 4555588877777653         5566777777888888888888887776  35577777776


Q ss_pred             HHHHHHHHHHhhhccccccc-------C----------C---CCCc------------c----hhHHHHHHHHHHhcccc
Q 015348          159 GLLVVLQFFITIAVRESALK-------L----------P---KSQS------------N----VGIRAQLSELSAALRKP  202 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~e~~~~-------~----------~---~~~~------------~----~~~~~~~~~~~~~~~~~  202 (408)
                      .....++.+..+++|.+++.       +          +   +.++            +    ...+..++++++..+||
T Consensus       168 l~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~  247 (412)
T PF01770_consen  168 LASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNP  247 (412)
T ss_pred             HHHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCc
Confidence            66666666666666643210       0          0   0000            0    01123345666778899


Q ss_pred             hhHHHHHHHHhhhcccccccceeEEEEE--eccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHH
Q 015348          203 EIMYSVAWFAASYSIIPVLTGTMFFYQT--QNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAV  280 (408)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  280 (408)
                      .++...+...+..+......+.......  +.-+-+....|...+...+.+.++.+..|++..++.+..-+..+.....-
T Consensus       248 ~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~  327 (412)
T PF01770_consen  248 RLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQ  327 (412)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHH
Confidence            8888777766644433332221111111  11233445567788888888888888888885555543333322222111


Q ss_pred             HHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHH
Q 015348          281 FMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAV  346 (408)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~  346 (408)
                      +.++ +.        .....+.+......+..........++ ..-+++...++.-|-++|+.+.+.
T Consensus       328 a~~L-~l--------m~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~A  385 (412)
T PF01770_consen  328 AGLL-FL--------MSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVA  385 (412)
T ss_pred             HHHH-HH--------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHH
Confidence            1111 11        112233333444444333333333344 555666677777788888765543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.22  E-value=1.3e-09  Score=103.50  Aligned_cols=158  Identities=18%  Similarity=0.259  Sum_probs=116.2

Q ss_pred             hhhhhhccCCCHHHHHHHHH-hhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQN-SANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~-~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      +.|+.+++|.|+.+.+.+.. ...+..++ .+++|+++||     ++||+.+.++.++..+..+..........+.+.+.
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-----~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~  320 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-----LSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMG  320 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            34666789999999999875 44455555 8899999999     99888877666554444333221110112455555


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      ...++..+..++..+...++..+..+++.         +++.++..+...++|..+++.++|.+.+..||+..|.+.+++
T Consensus       321 ~~~~l~~~~~g~~~~~~~a~~~~l~~~~~---------~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~  391 (491)
T PRK11010        321 AAVFFENLCGGMGTAAFVALLMTLCNKSF---------SATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAA  391 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            56677666666666666788888888753         788889888899999999988999999999999999999888


Q ss_pred             HHHHHHHhhhcccc
Q 015348          162 VVLQFFITIAVRES  175 (408)
Q Consensus       162 ~~~~~~~~~~~~e~  175 (408)
                      .++..+...+++++
T Consensus       392 ~l~~l~~~~~~~~~  405 (491)
T PRK11010        392 AVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHhc
Confidence            88877666665544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.21  E-value=4.7e-11  Score=112.62  Aligned_cols=140  Identities=10%  Similarity=-0.064  Sum_probs=105.8

Q ss_pred             cccccccceeEEEEEec--cCCChhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCceehHHHHHHHHHHHHHhHhhhccc
Q 015348          216 SIIPVLTGTMFFYQTQN--LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKS-VSPRKLISAIQAMMAVFMISDVLFVKGV  292 (408)
Q Consensus       216 ~~~~~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (408)
                      ..........+.|..++  +|++..+.|.......++..++.++.|++.|| +|+|+.+..+.++..+......      
T Consensus        24 ~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~------   97 (475)
T TIGR00924        24 FSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA------   97 (475)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH------
Confidence            33344445556666665  89999999999999999999999999999999 8999999988887776654422      


Q ss_pred             ccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          293 YREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGC---EGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~---~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                           .....+.+.......+++.+...|. .+++.+..|+++   |++++++.....++|..+||.++|.+.+..|+
T Consensus        98 -----~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~  170 (475)
T TIGR00924        98 -----MSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGY  170 (475)
T ss_pred             -----hcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence                 1122223333444556666555555 778889888754   88899999999999999999999999987664

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.21  E-value=2.5e-10  Score=105.05  Aligned_cols=149  Identities=11%  Similarity=0.170  Sum_probs=112.0

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      +.|++ +.|.++++.+.+.+...+..+. +++.|+++||     ++||+.+..+.....++.....  .    .. ....
T Consensus       224 p~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~~~~~~l~~~~~~~~~~~~~~~--~----~~-~~~~  290 (381)
T PRK03633        224 PLYLN-HQGMSDASIGFWMALLVSAGILGQWPIGRLADR-----FGRLLVLRVQVFVVILGSIAML--S----QA-AMAP  290 (381)
T ss_pred             HHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----cCcHHHHHHHHHHHHHHHHHHh--h----hH-HHHH
Confidence            45664 5799999999988877765555 8889999999     9999998888777766654432  2    22 2234


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLV  162 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~  162 (408)
                      ..++.|++.....+...+.+.|..|+++         ++...+..+...++|..+||.++|++.++.||++.|.+.+.+.
T Consensus       291 ~~~l~g~~~~~~~p~~~~~~~~~~~~~~---------~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~  361 (381)
T PRK03633        291 ALFILGAAGFTLYPVAMAWACEKVEHHE---------LVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVS  361 (381)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHccCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            5666777766667777788888776643         5666777777899999999999999999999999999988877


Q ss_pred             HHHHHHhhhccc
Q 015348          163 VLQFFITIAVRE  174 (408)
Q Consensus       163 ~~~~~~~~~~~e  174 (408)
                      ++..+..++.++
T Consensus       362 l~~~~~~~~~~~  373 (381)
T PRK03633        362 FIYLLMLLRKAG  373 (381)
T ss_pred             HHHHHHHHhccC
Confidence            766555544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.21  E-value=4.4e-11  Score=113.94  Aligned_cols=129  Identities=15%  Similarity=0.003  Sum_probs=105.6

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      ...+++|.+..+.++......++..++.++.|++.||+|+|+.+..+.++..+..+...           ..++...+..
T Consensus        27 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~   95 (485)
T TIGR00711        27 TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG-----------VAPNLELMII   95 (485)
T ss_pred             HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-----------CcCCHHHHHH
Confidence            34566899999999999999999999999999999999999998888777666554421           2233334555


Q ss_pred             hHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          308 SSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      ..+..+++.+...|. .+++.|..|+++|+++.++......+|..++|.++|++.++.|++
T Consensus        96 ~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~  156 (485)
T TIGR00711        96 FRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWR  156 (485)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCce
Confidence            666777777666666 889999999999999999999999999999999999999877754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00897 2A0118 polyol permease family

Probab=99.21  E-value=1.8e-10  Score=106.89  Aligned_cols=154  Identities=8%  Similarity=0.014  Sum_probs=106.3

Q ss_pred             hHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHH
Q 015348          204 IMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMI  283 (408)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  283 (408)
                      +....+..++............+++. +++|.++.+.|...+...++..++.++.|++.||+++|+.+..+..+..+..+
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~   93 (402)
T TIGR00897        15 LLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHA   93 (402)
T ss_pred             hhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            33333443332333333333344444 56899999999999999999999999999999999999999888777666543


Q ss_pred             HhHhhhcccccccCc-CceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 015348          284 SDVLFVKGVYREMGV-PDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAF-IVSGYLGVAL  360 (408)
Q Consensus       284 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~-~ig~~~~g~l  360 (408)
                      ....        .+. ..+++.+.......+++.....+. ...+.+..|+++|+++.|+.++..++|. .++|.+++.+
T Consensus        94 ~~~~--------~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l  165 (402)
T TIGR00897        94 AFIV--------FGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA  165 (402)
T ss_pred             HHHH--------HhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3211        011 112223333444455554444444 6677888999999999999999999997 5889999998


Q ss_pred             HHhcCC
Q 015348          361 ASYTGV  366 (408)
Q Consensus       361 ~~~~g~  366 (408)
                      .+..|.
T Consensus       166 ~~~~g~  171 (402)
T TIGR00897       166 IPAFGE  171 (402)
T ss_pred             ccccch
Confidence            877664

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.20  E-value=2.5e-10  Score=106.09  Aligned_cols=150  Identities=15%  Similarity=0.022  Sum_probs=116.7

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      .|+ ++.|.++.+.+.+.+...+..++ .++.|+++||     .|||+.+..+.+...++.+.....+    +.+.+.+.
T Consensus       245 ~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  314 (406)
T PRK11551        245 SLL-VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-----LRPRRVVLLIYAGILASLAALAAAP----SFAGMLLA  314 (406)
T ss_pred             HHH-HhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHH
Confidence            445 45799999999998888866665 8899999999     9999988887766666666666666    66677777


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhhHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS-PPSMFLFFGLLV  162 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g-~~~~f~i~~~~~  162 (408)
                      .++.|++.+...+...++..|..|+++         |++..++.+....+|..+||.++|.+.++.+ |...++......
T Consensus       315 ~~~~g~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~  385 (406)
T PRK11551        315 GFAAGLFVVGGQSVLYALAPLFYPTQV---------RGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVI  385 (406)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcchhh---------hhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHH
Confidence            788888877777777789999998764         9999999999999999999999999988754 555666665555


Q ss_pred             HHHHHHhhhcc
Q 015348          163 VLQFFITIAVR  173 (408)
Q Consensus       163 ~~~~~~~~~~~  173 (408)
                      ++..+..+++.
T Consensus       386 ~~~~~~~~~~~  396 (406)
T PRK11551        386 LVAALAALLLV  396 (406)
T ss_pred             HHHHHHHHHHh
Confidence            55555544443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.18  E-value=1.3e-10  Score=106.65  Aligned_cols=141  Identities=18%  Similarity=0.225  Sum_probs=115.4

Q ss_pred             hccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 015348            9 DSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLS   87 (408)
Q Consensus         9 ~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (408)
                      +++|.++.+.+.+.+...+...+ .++.|+++||     +|||+.+..+.+...++.+.+.+.+.  .+...++...++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  305 (377)
T TIGR00890       233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-----IGRQKTMSIVFGISAVGMAAMLFIPM--LNDVLFLATVALV  305 (377)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhhhHHHHHHHHHHHHHHHccc--chhHHHHHHHHHH
Confidence            67899999999988888866665 8999999999     99999999888888888777766551  1223344556777


Q ss_pred             HHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q 015348           88 NLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQ  165 (408)
Q Consensus        88 g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~  165 (408)
                      +++.+...+..++++.|..|+++         |++.++..+....+|..++|.+.|.+.+..||+..|.+.+++.++.
T Consensus       306 g~~~g~~~~~~~~~~~~~~~~~~---------~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       306 FFTWGGTISLFPSLVSDIFGPAN---------SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHhccchhccHHHHHHHhhhhh---------hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            88877777777788899888754         9999999999999999999999999999999999999888776654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.18  E-value=4.4e-10  Score=104.43  Aligned_cols=127  Identities=13%  Similarity=0.062  Sum_probs=98.0

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      ..+++|.++.+.++......++..++.++.|++.||+|+|+.+..+.....+..+....           .++.+.+...
T Consensus        39 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~-----------~~~~~~l~~~  107 (406)
T PRK15402         39 VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILL-----------AQSIEQFTLL  107 (406)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH-----------HccHHHHHHH
Confidence            44678999999999999999999999999999999999999988877666655444221           1222233444


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .+..+++.....+. .+.+.|..|++++++..++......++..++|.+++.+.+..|+
T Consensus       108 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w  166 (406)
T PRK15402        108 RFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW  166 (406)
T ss_pred             HHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence            45555555544555 77888999999999999999888889999999999999887654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.18  E-value=3.2e-10  Score=104.54  Aligned_cols=154  Identities=12%  Similarity=0.060  Sum_probs=102.6

Q ss_pred             chhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHH
Q 015348          202 PEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVF  281 (408)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  281 (408)
                      |.++...+...+.+..........+....+++|+|..+.+++.++..++..+..+..|++.||+|.|+.+..+..+..+.
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~  113 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP  113 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            44444444433323322222232333334469999999999999999999999899999999999999988887776655


Q ss_pred             HHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          282 MISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALA  361 (408)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~  361 (408)
                      .+...+.+..      ..+++..+....+..+++...+.+....+++..|+++||++.|+....+++|..+++.+...+.
T Consensus       114 ~~~~~~a~~~------~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i  187 (462)
T PRK15034        114 CVWLGIAVQN------PNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI  187 (462)
T ss_pred             HHHHHHHHcc------cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4442210000      1123334555556666665544455888999999999999999998778888877766665433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.17  E-value=1.4e-10  Score=110.80  Aligned_cols=146  Identities=12%  Similarity=0.162  Sum_probs=107.8

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      +.|+++++|.++.+.+.+.+...+..++ .++.|+++||     +|||+.+..+..+..+..+......  ..+.+....
T Consensus       299 p~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-----~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  371 (496)
T PRK03893        299 PTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-----LGTRKAYVCSLLISQLLIIPVFAIG--GANVWVLGL  371 (496)
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHhhcc--ccHHHHHHH
Confidence            5677789999999999999988876666 8899999999     9999988887766665554433332  124444444


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLV  162 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~  162 (408)
                      ..++.+.......+...+++.|..|++         +|++.+++.+....+|..+||.++|.+.+.+||+..+...+...
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        372 LLFFQQMLGQGISGLLPKLIGGYFDTE---------QRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             HHHHHHHHhcccchhhHHHHHhhCCHH---------HhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            444444333333445557888888865         48999999999999999999999999999999998887665544


Q ss_pred             HHH
Q 015348          163 VLQ  165 (408)
Q Consensus       163 ~~~  165 (408)
                      .+.
T Consensus       443 ~~~  445 (496)
T PRK03893        443 TFV  445 (496)
T ss_pred             HHH
Confidence            433

>PRK09952 shikimate transporter; Provisional

Probab=99.16  E-value=9.1e-10  Score=103.19  Aligned_cols=158  Identities=11%  Similarity=0.128  Sum_probs=110.0

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      ..|+++++|.++.+...+.........+ .+++|+++||     +|||+.+..+.++..++.+.+........+.+.++.
T Consensus       274 ~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-----~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T PRK09952        274 LNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-----FGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFF  348 (438)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            3467788999987655444444433333 7889999999     999999888876655544333221111113444455


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHH-HHHHHHHHHHHHHHHhhcC--ChhhHHHHHH
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMS-SSMGGVLGNLLVGFAIDRF--SPPSMFLFFG  159 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~g~~ig~~l~~~l~~~~--g~~~~f~i~~  159 (408)
                      ..++.+++.+...+...+++.|..|.+         .|+...++.+.. ..+|..++|.+.+++.+..  +|+..+...+
T Consensus       349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~---------~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~  419 (438)
T PRK09952        349 SIMLANIAHDMVVCVQQPMFTEMFGAS---------YRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLL  419 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCcc---------hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            667778888887777889999999985         387777775444 4588899999999998753  4888888887


Q ss_pred             HHHHHHHHHhhhcccc
Q 015348          160 LLVVLQFFITIAVRES  175 (408)
Q Consensus       160 ~~~~~~~~~~~~~~e~  175 (408)
                      +..++..+..+.++|+
T Consensus       420 ~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        420 AGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHHcccc
Confidence            7777777666667664

>PRK10504 putative transporter; Provisional

Probab=99.16  E-value=4.9e-10  Score=106.30  Aligned_cols=135  Identities=15%  Similarity=0.128  Sum_probs=107.2

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      .++|+++.+|.++.+.++......+.... .++.|+++||     +|||+.+..+.....+...++.+.+.. .+.+...
T Consensus       284 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-----~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  357 (471)
T PRK10504        284 TPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-----FGYRRVLVATTLGLALVSLLFMLVALL-GWYYLLP  357 (471)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHHHHHHHHhcccc-ccHHHHH
Confidence            35677778999999999888776665555 6899999999     999999998888777776666554311 1444445


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChh
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPP  152 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~  152 (408)
                      ...++.|++.+...+..+++..+..|++         .++..++..+....+|..+|+.++|.+.+..|+.
T Consensus       358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~  419 (471)
T PRK10504        358 FVLFLQGMVNSTRFSSMNTLTLKDLPDN---------LASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ  419 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHH---------hccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            5677788888888888888888888865         4999999999999999999999999998876653

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.16  E-value=1.8e-10  Score=108.96  Aligned_cols=125  Identities=11%  Similarity=0.026  Sum_probs=92.8

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      .+.+++|.+..+.++......++..++.++.|++.||+|+|+.+..+.+...+..++...           ..+...+..
T Consensus        61 ~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~-----------~~s~~~l~~  129 (476)
T PLN00028         61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL-----------VSSATGFIA  129 (476)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH-----------hcCHHHHHH
Confidence            356678999999999888888999999999999999999999887776666555443211           112223333


Q ss_pred             hHHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          308 SSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                      ..+..+++.....+...++.+..|+++||++.|+.+...++|..+++.+.+.+.+.
T Consensus       130 ~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~  185 (476)
T PLN00028        130 VRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPL  185 (476)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555554445566788999999999999999998889998888777766543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.15  E-value=4.3e-10  Score=104.47  Aligned_cols=127  Identities=13%  Similarity=0.101  Sum_probs=99.2

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      ..+++|.+..+.+...+...++..++.++.|++.||+|||+.+..+..+..+..+...           ..++...+...
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~-----------~a~~~~~l~~~  110 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL-----------FTTSMTQFLIA  110 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH-----------HcCCHHHHHHH
Confidence            3456888999999999999999999999999999999999998888766665544422           11233344555


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .+..+++.+...+. .....|..|++++++.+++.+...+++..+||.+++.+.++.|+
T Consensus       111 r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw  169 (413)
T PRK15403        111 RFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHW  169 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            56666665544444 67788899999999999999999999999999999999887654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.15  E-value=8.2e-10  Score=103.63  Aligned_cols=127  Identities=15%  Similarity=0.046  Sum_probs=92.0

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      +..+ .|.++.+.++......++..++.++.|++.||+++|+.+..+.++.++..+.....    +   ........+..
T Consensus        52 ~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~l~~  123 (438)
T TIGR00712        52 YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFV----P---WATSSIAIMFV  123 (438)
T ss_pred             HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcc----c---cccchHHHHHH
Confidence            3444 59999999999999999999999999999999999998888776666654442210    0   00111112233


Q ss_pred             hHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          308 SSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALAS  362 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~  362 (408)
                      ..+..+++.+...+. ...+.|..|+++|++++|+.+...+++..+++.+.+...+
T Consensus       124 ~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~  179 (438)
T TIGR00712       124 LLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA  179 (438)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            334445555444444 7788899999999999999999999999999887776544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.15  E-value=3.5e-10  Score=104.67  Aligned_cols=127  Identities=13%  Similarity=0.054  Sum_probs=96.8

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      ..+++|.|+.+.++......++..++.++.|++.||+|+|+.+..+.....+..+....           .++.+.+...
T Consensus        34 i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~  102 (394)
T PRK11652         34 MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF-----------AHSLTVLIAA  102 (394)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH-----------HccHHHHHHH
Confidence            45678999999999999999999999999999999999999888777666555443211           1222233444


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .+..+++.....+. ..+..+..+++++++..+..+....++..++|.+++.+.+..|+
T Consensus       103 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~  161 (394)
T PRK11652        103 SAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGW  161 (394)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            45555554444455 66778888889999999999999999999999999999886653

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.14  E-value=1.9e-10  Score=108.70  Aligned_cols=135  Identities=10%  Similarity=-0.024  Sum_probs=101.4

Q ss_pred             cceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCceehHHHHHHHHHHHHHhHhhhcccccccCcCc
Q 015348          222 TGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKS-VSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPD  300 (408)
Q Consensus       222 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (408)
                      ......|.++++|++..+.++..........+..++.|+++|| +|+|+.+..+.++..+..+...+         . .+
T Consensus        34 ~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~---------~-~~  103 (489)
T PRK10207         34 QGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGM---------S-LL  103 (489)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHH---------h-cc
Confidence            3344445666789999998888877777777778899999999 99999999998888777554322         0 01


Q ss_pred             eEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          301 SLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPG--CEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~--~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ....+.......+++.+...|. .+++.|..|++  +|++.+++.....++|..+||.++|++.++.|+
T Consensus       104 ~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw  172 (489)
T PRK10207        104 KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGY  172 (489)
T ss_pred             chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence            1111223445556666666666 88999999877  457889999999999999999999999998763

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.14  E-value=6.6e-10  Score=104.90  Aligned_cols=150  Identities=23%  Similarity=0.256  Sum_probs=132.1

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      ++++.++++|.++...|++.+...++.++ ..+.+.+.+|     .++++.+..+.+..+++.+.+++.+    +.+...
T Consensus       241 lPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-----~~~~~lv~~~~~~~a~~~~~lal~~----~~~~~~  311 (524)
T PF05977_consen  241 LPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-----LSSRRLVLLASLLFALALLLLALSP----SFWLAL  311 (524)
T ss_pred             hhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cCcchhhHHHHHHHHHHHHHHhcch----HHHHHH
Confidence            35677889999999999999999988888 7788889888     8888899999999999999999988    999999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      +..++.|++.....+..++.+-+..|++         .|||.++++......+..+|..+.|.+.+..|.+..+.+.++.
T Consensus       312 ~~l~l~G~~~~~~~~~~~t~~Q~~~P~~---------~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~  382 (524)
T PF05977_consen  312 IALFLAGAAWIIANSSLNTLVQLSVPDW---------VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAA  382 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHH---------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            9999999999999988888888888876         4999999999999999999999999999999999999888776


Q ss_pred             HHHHHHHhh
Q 015348          162 VVLQFFITI  170 (408)
Q Consensus       162 ~~~~~~~~~  170 (408)
                      .++..++..
T Consensus       383 lll~~~~~~  391 (524)
T PF05977_consen  383 LLLSALIAL  391 (524)
T ss_pred             HHHHHHHHH
Confidence            666555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.13  E-value=1.6e-10  Score=108.14  Aligned_cols=128  Identities=14%  Similarity=0.105  Sum_probs=102.3

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      ...+++|.++.+.++......++..++.++.|++.||+|+|+.+..+.+...+.......           ....+.+..
T Consensus        43 ~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-----------~~~~~~l~~  111 (426)
T PRK12307         43 LIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL-----------ASGVIMLTL  111 (426)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHH
Confidence            345678999999999999999999999999999999999999998888777766544221           122234455


Q ss_pred             hHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          308 SSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ..+..+++.+...+. ..++.|..|+++|+++.++......+|..+++.+.+.+.+..|+
T Consensus       112 ~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w  171 (426)
T PRK12307        112 SRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW  171 (426)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH
Confidence            556667776666666 78899999999999999999999999999999888888776553

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.12  E-value=1.1e-10  Score=110.89  Aligned_cols=248  Identities=18%  Similarity=0.127  Sum_probs=186.2

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhcc------------
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQ------------   72 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~------------   72 (408)
                      -+.+.++++.++.|++.+.+-++..+ ..+..+..-|     ..|-+++-+|.++.+++.+++++.+.            
T Consensus       122 tiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-----~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~  196 (735)
T KOG3626|consen  122 TIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-----GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI  196 (735)
T ss_pred             hhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-----cCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence            35678999999999998888887776 7788999999     88889999999999999998876532            


Q ss_pred             ------C---------------------------cc--hHH-HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhh
Q 015348           73 ------S---------------------------SI--SIF-TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKA  116 (408)
Q Consensus        73 ------~---------------------------~~--~~~-~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~  116 (408)
                            .                           ..  .++ .++.+.++.|+|.....+...+++=|.+++++      
T Consensus       197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------  270 (735)
T KOG3626|consen  197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN------  270 (735)
T ss_pred             hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccC------
Confidence                  0                           00  133 45666799999999888888888877777653      


Q ss_pred             ccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc------------------CC-hhhHHHHHHHHHHHHHHHhhhcccccc
Q 015348          117 QSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR------------------FS-PPSMFLFFGLLVVLQFFITIAVRESAL  177 (408)
Q Consensus       117 ~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~------------------~g-~~~~f~i~~~~~~~~~~~~~~~~e~~~  177 (408)
                         -....++.+....+|.++|-++++++...                  .| |..-|++.+.+.++..+..+++|++.+
T Consensus       271 ---SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  271 ---SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             ---CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence               78888999999999999999999988643                  12 556677788887777777777765533


Q ss_pred             cCCC-------------CC---c----chhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCCh
Q 015348          178 KLPK-------------SQ---S----NVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRS  237 (408)
Q Consensus       178 ~~~~-------------~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  237 (408)
                      +..+             ++   +    ..+.++..+.++++++||.+...++...+.......+.+..|=|+.+++|.++
T Consensus       348 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sa  427 (735)
T KOG3626|consen  348 KSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISA  427 (735)
T ss_pred             cccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCH
Confidence            2110             00   0    12345666778888999998888877777566666677777888888899999


Q ss_pred             hhHHHHHHH-HHHHHHHHHHHHHHhhccCCC
Q 015348          238 SVLGISKVF-GQAAMLLWGVIYNSGLKSVSP  267 (408)
Q Consensus       238 ~~~g~~~~~-~~~~~~~~~~~~~~l~~~~~~  267 (408)
                      ..+.++... ...+..+|.++.|.+.+|+..
T Consensus       428 s~An~l~G~i~vp~~~~Gi~lGG~iikkfkl  458 (735)
T KOG3626|consen  428 SLANILTGSIGVPAAAVGIFLGGLIIKKFKL  458 (735)
T ss_pred             HHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence            998877644 445566788889999998763

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.12  E-value=5e-10  Score=103.49  Aligned_cols=145  Identities=16%  Similarity=0.138  Sum_probs=108.4

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHH-HH-HHHhccCcchHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSW-LA-IAILSQSSISIFT   79 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~   79 (408)
                      ++.|+++++|.++.+.+...+...+...+ .++.|+++||     +|||+.+.....+..+.. .. .....  ..+.+.
T Consensus       242 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  314 (394)
T TIGR00883       242 LPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-----IGRRPVLIIFTVLAALLAVPLLMALLD--SGSFTL  314 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hchHHHHHHHHHHHHHHHHHHHHHHhc--CCchHH
Confidence            35677788999999999988887765555 8999999999     999997775544443332 22 22221  125666


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHH-HHHHHHHHHHHHHHHHHHhhcCC-hhhHHHH
Q 015348           80 MSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFV-WMSSSMGGVLGNLLVGFAIDRFS-PPSMFLF  157 (408)
Q Consensus        80 ~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~g~~ig~~l~~~l~~~~g-~~~~f~i  157 (408)
                      ......+.+++.+...+...+++.|..|+++         |++.++.. +....+|..++|.++|.+.++.| |+..++.
T Consensus       315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---------~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       315 FFFLVLGLALIGGMYTGPMGSFLPELFPTEV---------RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhCCccc---------eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence            7777888899988888888899999999764         77777763 45567889999999999999988 8887776


Q ss_pred             HHHHHH
Q 015348          158 FGLLVV  163 (408)
Q Consensus       158 ~~~~~~  163 (408)
                      .....+
T Consensus       386 ~~~~~l  391 (394)
T TIGR00883       386 LAALAL  391 (394)
T ss_pred             HHHHHH
Confidence            655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.12  E-value=9.3e-11  Score=110.31  Aligned_cols=146  Identities=12%  Similarity=0.136  Sum_probs=113.2

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHH--HHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYI--AIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      .|+ ++.|.++.+.+++.+...+..++ +++.|.++||.+   +++|+..  ..+.+..+++.+++...+    +++.++
T Consensus       266 ~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~---~~~~~~~~~~~~~~~~~l~~ll~~~~~----~~~~~~  337 (455)
T TIGR00892       266 PYA-KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKW---IRPHVQYLFSFALLFNGLTHLLCALAG----DYTGLV  337 (455)
T ss_pred             HHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cCHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHH
Confidence            445 45799999999999988866555 899999999811   2333322  233333444445555566    788888


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhhHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRF-SPPSMFLFFGL  160 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~-g~~~~f~i~~~  160 (408)
                      +.+++.|++.+...+...+++.|..|++         ++++.+++.+...++|..+||.++|.+.+.. +|+..|++.++
T Consensus       338 i~~~~~G~~~g~~~~~~~~~~~~~~~~~---------~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~  408 (455)
T TIGR00892       338 IYCIFFGLSFGSVGALLFEVLMDLVGAQ---------RFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGS  408 (455)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHhhHH---------HHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhH
Confidence            8999999999998888889999998875         3899999999999999999999999999887 59999999888


Q ss_pred             HHHHHHH
Q 015348          161 LVVLQFF  167 (408)
Q Consensus       161 ~~~~~~~  167 (408)
                      ..++..+
T Consensus       409 ~~li~~~  415 (455)
T TIGR00892       409 IVVSAGL  415 (455)
T ss_pred             HHHHHHH
Confidence            7666544

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.11  E-value=1.4e-10  Score=100.59  Aligned_cols=117  Identities=14%  Similarity=0.115  Sum_probs=98.2

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHH
Q 015348          235 IRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVM  314 (408)
Q Consensus       235 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (408)
                      -+....|++.+...++..+.++.+|.++||+|||.++..|.+..++..+.           ++.+.+...++..-+..|+
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll-----------~~~S~~F~afv~aR~l~Gi  133 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLL-----------WALSRNFAAFVLARFLGGI  133 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhh
Confidence            34566788999999999999999999999999999999998888776555           4444443233344566777


Q ss_pred             HHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          315 FFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALAS  362 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~  362 (408)
                      ..+...++.++++|+.++++|+..++..+...++|..+||.++|++.+
T Consensus       134 ~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  134 FKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            777777889999999999999999999999999999999999999998

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.10  E-value=1.1e-09  Score=103.25  Aligned_cols=153  Identities=13%  Similarity=0.074  Sum_probs=100.9

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCC--cchhHH-HHHHHHHHHHHHHHHHhccCcchHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQ--HRVPYI-AIGAFLQAVSWLAIAILSQSSISIF   78 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~--grk~~l-~~~~~~~~~~~~~~~~~~~~~~~~~   78 (408)
                      ++.|++++.|.++.+.+.......+..++ .++.|+++||     .  +||+.. .....+..++.+.....+  ..+.+
T Consensus       276 ~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-----~~~~r~~~~~~~~~~l~~~~~~~~~~~~--~~~~~  348 (452)
T PRK11273        276 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-----VFRGNRGATGVFFMTLVTIATIVYWLNP--AGNPT  348 (452)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HccCCcchHHHHHHHHHHHHHHHHHHhc--ccChH
Confidence            45678888999999999888877766665 8899999999     6  444432 222223333333322222  11344


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHH-HHHHHHHHHhhcCChhhHHHH
Q 015348           79 TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGV-LGNLLVGFAIDRFSPPSMFLF  157 (408)
Q Consensus        79 ~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-ig~~l~~~l~~~~g~~~~f~i  157 (408)
                      ...+..++.|.+..........+..|..|++         .||+..++.+....+|.. ++|.+.|.+.++.||+..|++
T Consensus       349 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~---------~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~  419 (452)
T PRK11273        349 VDMACMIVIGFLIYGPVMLIGLHALELAPKK---------AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV  419 (452)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHcChh---------hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHH
Confidence            3444444444433222222335567888775         499999999888888765 479999999999999999998


Q ss_pred             HHHHHHHHHHHhhh
Q 015348          158 FGLLVVLQFFITIA  171 (408)
Q Consensus       158 ~~~~~~~~~~~~~~  171 (408)
                      .+..+++..+....
T Consensus       420 ~~~~~~~~~~~~~~  433 (452)
T PRK11273        420 MIGGSILAVILLIV  433 (452)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877777655443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.10  E-value=4.5e-10  Score=104.74  Aligned_cols=136  Identities=11%  Similarity=-0.039  Sum_probs=98.3

Q ss_pred             ccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC-CCceehHHHHHHHHHHHHHhHhhhcccccccCcC
Q 015348          221 LTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSV-SPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP  299 (408)
Q Consensus       221 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (408)
                      .....+.|..+.+|+++.+.+...........++.++.|+++||+ |+|+.+..+.++..+.......         . .
T Consensus        28 ~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~---------~-~   97 (493)
T PRK15462         28 MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA---------S-E   97 (493)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH---------h-h
Confidence            334455556666899999999999888899999999999999999 9999988887777666433110         0 0


Q ss_pred             ceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          300 DSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPG--CEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~--~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ..............++.+...|. .+++.|..|++  +|.+.+++.....++|+.++|.+.|++.+..|+
T Consensus        98 ~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw  167 (493)
T PRK15462         98 IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW  167 (493)
T ss_pred             cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh
Confidence            00001122222223333444454 77889999875  799999999999999999999999999987664

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.09  E-value=1.2e-10  Score=106.93  Aligned_cols=128  Identities=13%  Similarity=0.052  Sum_probs=100.5

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      +..+++|.+..+.|++.+...++..++.++.|++.||+|+|+.+..+..+..+..++...           ....+.+..
T Consensus        20 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~   88 (379)
T TIGR00881        20 YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF-----------STSLWVMAA   88 (379)
T ss_pred             HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH-----------hhhHHHHHH
Confidence            355678999999999999999999999999999999999999998887776666544221           122334445


Q ss_pred             hHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCC
Q 015348          308 SSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSG-YLGVALASYTGV  366 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~-~~~g~l~~~~g~  366 (408)
                      ..+..+++.+...|. .+++.|..|+++|++..++.+...++|..+++ .+++.+.+..+.
T Consensus        89 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  149 (379)
T TIGR00881        89 LWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW  149 (379)
T ss_pred             HHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCc
Confidence            556666666655666 88999999999999999999999999999999 566666665443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.08  E-value=1.4e-09  Score=100.79  Aligned_cols=129  Identities=9%  Similarity=-0.073  Sum_probs=101.3

Q ss_pred             EEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehh
Q 015348          227 FYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLI  306 (408)
Q Consensus       227 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (408)
                      +..++++|.+..+.|++.+...++..++.+..+++.||+|+|+.+..+..+.++.......        ....++++.+.
T Consensus        27 ~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~--------~~~~~~~~~~l   98 (410)
T TIGR00885        27 PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWP--------AAEIMNYTLFL   98 (410)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH--------HHhhccHHHHH
Confidence            3457779999999999999999999999999999999999999999888877776544211        00112233444


Q ss_pred             hhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          307 FSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       307 ~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                      ...+..+++.+...+. +.++.+..|++++++..++.+...++|..++|.+++.+...
T Consensus        99 ~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~  156 (410)
T TIGR00885        99 VGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS  156 (410)
T ss_pred             HHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5556666766555555 77888999999999999999999999999999999988643

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.08  E-value=1.6e-09  Score=100.08  Aligned_cols=155  Identities=17%  Similarity=0.121  Sum_probs=113.9

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      +.|++ +.|.|+.+.|...+...+..++ .++.|++.||     .+||+.+..+..+..++..++...+.   +....  
T Consensus       229 p~~l~-~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-----~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~--  297 (393)
T PRK09705        229 PAFYI-EIGASAQYSGSLLALMTLGQAAGALLMPAMARH-----QDRRKLLMLALVLQLVGFCGFIWLPL---QLPVL--  297 (393)
T ss_pred             HHHHH-HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHHHHHHccc---hHHHH--
Confidence            45665 4799999999999988877666 8999999999     99999988887777776665544331   22222  


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhhHHHHHHHH
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS-PPSMFLFFGLL  161 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g-~~~~f~i~~~~  161 (408)
                      ...+.|++.+...+...+...+..++++        ++++..+..+....++..++|.+.|++.+..| |+..|.+.+..
T Consensus       298 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~--------~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~  369 (393)
T PRK09705        298 WAMVCGLGLGGAFPLCLLLALDHSVQPA--------IAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALC  369 (393)
T ss_pred             HHHHHHHhccchHHHHHHHHHhhcCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            2345577777666666566666665433        58999999999999999999999999999876 77788887777


Q ss_pred             HHHHHHHhh-hcccccc
Q 015348          162 VVLQFFITI-AVRESAL  177 (408)
Q Consensus       162 ~~~~~~~~~-~~~e~~~  177 (408)
                      +++...... +.||++.
T Consensus       370 ~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        370 VVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHHHHHHHHHhcccccc
Confidence            666655433 3555543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.08  E-value=3.9e-10  Score=109.65  Aligned_cols=138  Identities=14%  Similarity=0.017  Sum_probs=107.1

Q ss_pred             EEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhh---cccccc--------
Q 015348          227 FYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFV---KGVYRE--------  295 (408)
Q Consensus       227 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------  295 (408)
                      +-..++++++..+.|++.+...++..++.++.+++.||.++|+.+.++.++.++..++..+-.   ......        
T Consensus        57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~  136 (633)
T TIGR00805        57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGN  136 (633)
T ss_pred             hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccc
Confidence            345566899999999999999999999999999999999999999998888877755432210   000000        


Q ss_pred             -------c---C-----------------c--CceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHH
Q 015348          296 -------M---G-----------------V--PDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSA  345 (408)
Q Consensus       296 -------~---~-----------------~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~  345 (408)
                             .   .                 .  ...+..+++..++.|++.....+. .+++.|..|+++++.+.|+.+..
T Consensus       137 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~  216 (633)
T TIGR00805       137 LSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESI  216 (633)
T ss_pred             ccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHH
Confidence                   0   0                 0  012334556777888888777777 89999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhc
Q 015348          346 VALAFIVSGYLGVALASYT  364 (408)
Q Consensus       346 ~~lg~~ig~~~~g~l~~~~  364 (408)
                      ..+|..+|+.++|.+.+..
T Consensus       217 ~~iG~~lG~llgg~l~~~~  235 (633)
T TIGR00805       217 AVFGPAFGYLLGSFCLQIY  235 (633)
T ss_pred             HHhhhHHHHHHHHHHHhcc
Confidence            9999999999999998764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=6.6e-10  Score=97.03  Aligned_cols=126  Identities=17%  Similarity=0.168  Sum_probs=108.3

Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHH
Q 015348          233 LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLE  312 (408)
Q Consensus       233 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
                      .+-+..+.|++.+..++..++.+++.|.+.||+|+|..+.++..++....++           +++.+.+.++++.-...
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTil-----------Fafg~sy~~l~vAR~LQ  169 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTIL-----------FAFGNSYPMLFVARSLQ  169 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHH-----------HHHcchhHHHHHHHHHh
Confidence            4556788999999999999999999999999999999999998888777665           33446666778888889


Q ss_pred             HHHHHhhhhH-HHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015348          313 VMFFFKILPF-SVYIAQVCPPGC-EGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGD  369 (408)
Q Consensus       313 ~~~~~~~~~~-~~~~~~~~p~~~-~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~  369 (408)
                      +++....... .+++++..|++. ||+++|+.-.+.++|-.+||..+|.+.|..|....
T Consensus       170 gvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP  228 (464)
T KOG3764|consen  170 GVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP  228 (464)
T ss_pred             hhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCc
Confidence            9988766666 889999988865 69999999999999999999999999999997654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.07  E-value=3.2e-09  Score=99.23  Aligned_cols=161  Identities=16%  Similarity=0.163  Sum_probs=130.2

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcch--hHHHHHHHHHHHHHHHHHH--hc--cCcch
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRV--PYIAIGAFLQAVSWLAIAI--LS--QSSIS   76 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk--~~l~~~~~~~~~~~~~~~~--~~--~~~~~   76 (408)
                      ..|.++++|+|..+...+.-+..+..+. ..++|++.||     +|.|  ++++.+.+...+..+.-.+  .+  ....+
T Consensus       305 ~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-----~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~  379 (477)
T PF11700_consen  305 GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-----FGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKS  379 (477)
T ss_pred             HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCccc
Confidence            4567789999999988887777766666 8899999999     8888  8888777666444433333  11  11237


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhhHH
Q 015348           77 IFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS-PPSMF  155 (408)
Q Consensus        77 ~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g-~~~~f  155 (408)
                      .+.+.+.-++.|+..|..++...++..++.|+++         .+..++++....-....+||.+.|.+.+..| -|..+
T Consensus       380 ~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~---------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~  450 (477)
T PF11700_consen  380 PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR---------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGF  450 (477)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence            8889999999999999999999999999999875         7999999999999999999999999999877 88888


Q ss_pred             HHHHHHHHHHHHHhhhccccccc
Q 015348          156 LFFGLLVVLQFFITIAVRESALK  178 (408)
Q Consensus       156 ~i~~~~~~~~~~~~~~~~e~~~~  178 (408)
                      ....++.++.+++.+++++++..
T Consensus       451 ~~l~~lf~~gl~ll~~v~~~~g~  473 (477)
T PF11700_consen  451 LFLLVLFLIGLILLFFVDVEKGR  473 (477)
T ss_pred             HHHHHHHHHHHHHHhhccchhhh
Confidence            88888888887777777766543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.06  E-value=1.9e-09  Score=101.22  Aligned_cols=137  Identities=18%  Similarity=0.217  Sum_probs=105.7

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      +|.++.++ ++.+.+.+.+...++.++ .+++|+++||     +|||+.+..+.++..++.+...+.+   .+.+..++.
T Consensus       247 ~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-----~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  317 (437)
T TIGR00792       247 YYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-----FGRKILFAGGILLMVLGYLIFFFAG---SNLPLILVL  317 (437)
T ss_pred             eeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHHHHcc---hhHHHHHHH
Confidence            45555556 566777777766666555 8899999999     9999999999888887777666543   256667778


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChh
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPP  152 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~  152 (408)
                      .++.|++.+...+...+++.|..+.++.  +..++.+|...+..+....+|..+++.+.|.+.+..||.
T Consensus       318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       318 IILAGFGQNFVTGLVWALVADTVDYGEW--KTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhh--hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            8889999999988888999998775421  111125799999999999999999999999998877763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.05  E-value=4.9e-09  Score=97.25  Aligned_cols=154  Identities=17%  Similarity=0.217  Sum_probs=103.8

Q ss_pred             hhhhhccCCCHHHHHHHHHhhc-ccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHH---HHhccCcchHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSAN-LPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAI---AILSQSSISIFT   79 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~-~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~   79 (408)
                      +++.+++|.++++.+++.+... ...++ .+++|++.||     +|||+.+..+.....+..+..   +..+   ++.+.
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-----~g~~~~l~~~~~~~~l~~l~~~~~~~~~---~~~~~  305 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-----LGLYRSLMLFGVLQAVSNLGYWVLAVTP---KHLWT  305 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHhcC---CcHHH
Confidence            4566789999999999986654 34444 7899999999     999988877766655554333   2332   15566


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 015348           80 MSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFG  159 (408)
Q Consensus        80 ~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~  159 (408)
                      +.+..++.++..+.......+......+++.         .++..+..+...++|..+++.++|.+.+..||+..|.+.+
T Consensus       306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~  376 (402)
T PRK11902        306 MALAIGIENLCGGMGTAAFVALLMALCNRSF---------SATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTV  376 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            6665555555555554444444455554432         2223455555667888877779999999999999999998


Q ss_pred             HHHHHHHHHhhhcccc
Q 015348          160 LLVVLQFFITIAVRES  175 (408)
Q Consensus       160 ~~~~~~~~~~~~~~e~  175 (408)
                      .++++..+.....+.+
T Consensus       377 ~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        377 VIALPGLALLWLMRGT  392 (402)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            8888776665554443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.05  E-value=4e-09  Score=99.89  Aligned_cols=127  Identities=12%  Similarity=0.055  Sum_probs=102.6

Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHH
Q 015348          232 NLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLL  311 (408)
Q Consensus       232 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                      +++++..+.|.+.....++..++.++.|++.||+|+|+.+..+.++..+..++...         ........++...+.
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~r~~  140 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPW---------AAGGGIALVVFCRVI  140 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHH---------HHHcCchHHHHHHHH
Confidence            57889999999999999999999999999999999999988887766655443211         011122345556677


Q ss_pred             HHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Q 015348          312 EVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYT-GVT  367 (408)
Q Consensus       312 ~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~-g~~  367 (408)
                      .|++.+...|. ..++.|..|+++|+++.|+.+...++|..+++.+.+.+.+.. |..
T Consensus       141 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~  198 (465)
T TIGR00894       141 QGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWP  198 (465)
T ss_pred             HHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            78887777777 889999999999999999999999999999999999998873 654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.04  E-value=1.2e-09  Score=103.80  Aligned_cols=158  Identities=9%  Similarity=-0.093  Sum_probs=107.3

Q ss_pred             cccc-hhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCceehHHHHH
Q 015348          199 LRKP-EIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKS-VSPRKLISAIQA  276 (408)
Q Consensus       199 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~  276 (408)
                      +|+| .++..+...+.............+.|..+++|++..+.+...............+.|++.|| +|+|+.+..+.+
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            4555 35555555555444444455566677778899999888777666555555556789999999 599999988877


Q ss_pred             HHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCch--hHHHHHHHHHHHHHHHHHH
Q 015348          277 MMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGC--EGSIMAFVMSAVALAFIVS  353 (408)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~--~g~~~g~~~~~~~lg~~ig  353 (408)
                      +..+......+          .++....+.......+++.+...|. .+++.+..|+++  ++..+++.+...++|..+|
T Consensus        97 ~~~ig~~l~~~----------~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~g  166 (500)
T PRK09584         97 VLAIGYALVAW----------SGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFS  166 (500)
T ss_pred             HHHHHHHHHHH----------hcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHH
Confidence            77665443211          0011112333344556665555555 778899987643  4567888899999999999


Q ss_pred             HHHHHHHHHhcCC
Q 015348          354 GYLGVALASYTGV  366 (408)
Q Consensus       354 ~~~~g~l~~~~g~  366 (408)
                      |.++|++.+..|+
T Consensus       167 p~i~g~l~~~~g~  179 (500)
T PRK09584        167 MLATPWLAAKYGW  179 (500)
T ss_pred             HHHHHHHHHhhCH
Confidence            9999999998764

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.03  E-value=2.8e-09  Score=101.44  Aligned_cols=166  Identities=14%  Similarity=0.180  Sum_probs=108.3

Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcC--ceEeehhhhHH
Q 015348          233 LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP--DSLYVLIFSSL  310 (408)
Q Consensus       233 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  310 (408)
                      .+.+..+.++..+...++.+++.++.|++.||+|||+.+..+..+..+..+........... ...+  ..+..++..-+
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~R~  128 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTS-IGPDNTGYVPEFVIYRI  128 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcccccc-ccccchhHHHHHHHHHH
Confidence            57888999999999999999999999999999999999988877766554332210000000 0000  11123345556


Q ss_pred             HHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHhhhhhhh
Q 015348          311 LEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPL  389 (408)
Q Consensus       311 ~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  389 (408)
                      ..|++.+...|. .+++.|..|+++||++.++.+....+|..+++.+++.+.+..+.......++...+.+.++..++..
T Consensus       129 l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~  208 (479)
T PRK10077        129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL  208 (479)
T ss_pred             HHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH
Confidence            777777777777 8899999999999999999999999999998877766654221111111123333444333333333


Q ss_pred             hhhhccCCCC
Q 015348          390 YWSYFMPDGV  399 (408)
Q Consensus       390 ~~~~~~~~~~  399 (408)
                      ...+.+||+.
T Consensus       209 ~~~~~l~~s~  218 (479)
T PRK10077        209 MLLYFVPETP  218 (479)
T ss_pred             HHHHcCCCCc
Confidence            3445566653

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.01  E-value=7.2e-09  Score=95.47  Aligned_cols=142  Identities=13%  Similarity=0.148  Sum_probs=112.4

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      .|+ +|.|.|+.+.|.+.+...+..+. .++.|++.||     +++|+.+..+.+...++.+.....+    +++.+++.
T Consensus       230 ~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-----~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~  299 (382)
T PRK11128        230 IYW-QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-----WSARDLLLLSAICGVVRWGLMGSTT----ALPWLIVI  299 (382)
T ss_pred             HHH-HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHH
Confidence            455 56899999999998877665555 7889999999     9999999999888888887777777    88888889


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHH-HHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVW-MSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLV  162 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~  162 (408)
                      .++.|++.+...+....++.+. +++         ++++.++..+ ...++|..+||.++|.+.+..|+ ..++..+.+.
T Consensus       300 ~~l~g~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~  368 (382)
T PRK11128        300 QILHCGTFTVCHLAAMRYIAAR-PGS---------EVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVA  368 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CHh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHH
Confidence            9999999998888777776664 322         3677888775 55677889999999999999987 4666666665


Q ss_pred             HHHHH
Q 015348          163 VLQFF  167 (408)
Q Consensus       163 ~~~~~  167 (408)
                      ++.++
T Consensus       369 ~~~~~  373 (382)
T PRK11128        369 LPALF  373 (382)
T ss_pred             HHHHH
Confidence            54433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.01  E-value=1.6e-09  Score=102.89  Aligned_cols=155  Identities=17%  Similarity=0.132  Sum_probs=109.9

Q ss_pred             hhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHh---ccCcc---hHHHH
Q 015348            8 KDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAIL---SQSSI---SIFTM   80 (408)
Q Consensus         8 ~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~---~~~~~---~~~~~   80 (408)
                      .+++|.+..+.+.......+..++ .++.|+++||     .+||+.+..+.++..++.+.+.+.   .....   ..+..
T Consensus       311 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (481)
T TIGR00879       311 FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-----FGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVA  385 (481)
T ss_pred             HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHH
Confidence            367888888888877777755554 8899999999     999999988887777776666521   11100   02222


Q ss_pred             HHHHHHHHHHHHH-HHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 015348           81 SLFLLLSNLGASI-AEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFG  159 (408)
Q Consensus        81 ~~~~~l~g~~~~~-~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~  159 (408)
                      +....+.+.+.+. ..+....++.|..|++         +|++.++..+...++|.+++|.+.+.+.++.+|++.|++.+
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---------~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~  456 (481)
T TIGR00879       386 IVFILLFIAFFAMGWGPVPWVIVSEIFPLS---------LRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFG  456 (481)
T ss_pred             HHHHHHHHHHHHccccCeehhhhhccCChH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHH
Confidence            2222222222222 2344446668888865         39999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhhh-ccccc
Q 015348          160 LLVVLQFFITIA-VRESA  176 (408)
Q Consensus       160 ~~~~~~~~~~~~-~~e~~  176 (408)
                      +++++..+..++ .||++
T Consensus       457 ~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       457 GLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHHHHHHheecccCC
Confidence            888777666554 66654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.01  E-value=2e-09  Score=97.85  Aligned_cols=127  Identities=15%  Similarity=0.092  Sum_probs=105.8

Q ss_pred             EEEeccCCChhh-HHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehh
Q 015348          228 YQTQNLKIRSSV-LGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLI  306 (408)
Q Consensus       228 ~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (408)
                      ++.+++|++.++ .|.+......+..+..+..|++.||+|.|+.+..+.+.-.+..++..+           ......+.
T Consensus        51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f-----------a~Sl~~L~  119 (511)
T TIGR00806        51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL-----------GTSVWHMQ  119 (511)
T ss_pred             HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence            456689999999 999999999999999999999999999999998888777776555332           12334566


Q ss_pred             hhHHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          307 FSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      +.-+..|++++.......++.+.+|+++|+++.|+.++...+|..+++.++++ ...+|.
T Consensus       120 i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gW  178 (511)
T TIGR00806       120 LMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGW  178 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCc
Confidence            67788888887777558999999999999999999999999999999999999 445554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10133 L-fucose transporter; Provisional

Probab=99.00  E-value=3.3e-09  Score=99.25  Aligned_cols=127  Identities=8%  Similarity=-0.047  Sum_probs=98.7

Q ss_pred             EEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehh
Q 015348          227 FYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLI  306 (408)
Q Consensus       227 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (408)
                      +..++++|.|+.+.|+......++..++.+..|++.||+|+|+.+..+..+..+..+....        ....+++..+.
T Consensus        50 p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~--------~~~a~~~~~ll  121 (438)
T PRK10133         50 PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWP--------AAEIMNYTLFL  121 (438)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--------HHhcCCHHHHH
Confidence            3357789999999999999999999999999999999999999999988887776544211        01123333555


Q ss_pred             hhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          307 FSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALA  361 (408)
Q Consensus       307 ~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~  361 (408)
                      ...+..+++.+...+. +.++.+..|+++++...++.+....+|..+++.+++.+.
T Consensus       122 ~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777776655555 777788777676667899999999999999999988765

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.00  E-value=8.5e-09  Score=95.29  Aligned_cols=151  Identities=15%  Similarity=0.073  Sum_probs=109.8

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhc-ccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhc--cCcchHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSAN-LPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILS--QSSISIFT   79 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~-~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~   79 (408)
                      +.|++ |.|.|++++|++..... ...++ .++.|++.||     +|+|+.+..+........+......  ....+.+.
T Consensus       232 ~~~l~-~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-----~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (390)
T TIGR02718       232 KLYLV-DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-----AGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAV  305 (390)
T ss_pred             hHHHH-hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHH
Confidence            45664 58999999999988765 34445 6789999999     9999998877665533322222111  00113444


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 015348           80 MSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFG  159 (408)
Q Consensus        80 ~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~  159 (408)
                      ......+.+++.+...+...+...+..++++        .+++.++..+...++|..+||.++|.+.+..|++..|...+
T Consensus       306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~  377 (390)
T TIGR02718       306 AWSCSAFGSLITGITSVAIYTAFMRFAGDGD--------QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGT  377 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            4455566677777777777777777766533        58999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHH
Q 015348          160 LLVVLQFFI  168 (408)
Q Consensus       160 ~~~~~~~~~  168 (408)
                      .+.++..+.
T Consensus       378 ~~~l~a~~~  386 (390)
T TIGR02718       378 VLAVLAILL  386 (390)
T ss_pred             HHHHHHHHH
Confidence            776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.99  E-value=2.1e-09  Score=113.21  Aligned_cols=119  Identities=11%  Similarity=-0.032  Sum_probs=92.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHH
Q 015348          237 SSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFF  316 (408)
Q Consensus       237 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (408)
                      ....++..++..++.+++.++.|+++||+|+|+++..+.++..+..++..+..        .....+.+.+..++.+++.
T Consensus        46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~r~l~G~~~  117 (1146)
T PRK08633         46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAY--------YLGWFWLAFAVTFLLGAQS  117 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH--------HHccHHHHHHHHHHHHHHH
Confidence            34567888888899999999999999999999998877665544433322100        1122334555566677777


Q ss_pred             HhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          317 FKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       317 ~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                      +...|. .+++.+.+|+++|++++|+.+...++|..+|+.+++++.+.
T Consensus       118 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        118 AIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777777 88999999999999999999999999999999999999876

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.99  E-value=7.2e-09  Score=96.00  Aligned_cols=148  Identities=10%  Similarity=0.110  Sum_probs=111.2

Q ss_pred             hhhhhhcc---CCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHH
Q 015348            4 NFFLKDSL---NVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFT   79 (408)
Q Consensus         4 ~~~l~~~l---~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (408)
                      +.|+++++   +.+..+.|.+.+...+.... .++.|++.||     .|||+.+.++..+.++...+....+    +.+.
T Consensus       239 ~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-----~g~~~~l~~~~~l~~l~~~~~~~~~----~~~~  309 (396)
T TIGR00882       239 ANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-----IGAKNALLIAGTIMSVRIIGSSFAT----TALE  309 (396)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccchhHHHHHHHHHHHHHHHHhcC----ChHH
Confidence            34555554   55667788888877655444 7888999999     9999999998888888777766666    8888


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHH-HHHHHHHHHHHHHHHHHHHhhcCChhhHHHHH
Q 015348           80 MSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSF-VWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFF  158 (408)
Q Consensus        80 ~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~  158 (408)
                      +++..++.|++..........+..+..+++         .++...+. .+....+|..+++.++|++.+..||+..|.+.
T Consensus       310 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---------~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~  380 (396)
T TIGR00882       310 VVILKMLHAFEVPFLLVGCFKYITSQFDVR---------LSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVL  380 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcc---------eEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHH
Confidence            888888888887665444434444444432         35555554 56788999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 015348          159 GLLVVLQFFIT  169 (408)
Q Consensus       159 ~~~~~~~~~~~  169 (408)
                      +++.++..+..
T Consensus       381 ~~~~~i~~~~~  391 (396)
T TIGR00882       381 GCIVLLFTLIS  391 (396)
T ss_pred             HHHHHHHHHHH
Confidence            88887776554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.98  E-value=2.4e-09  Score=83.26  Aligned_cols=109  Identities=17%  Similarity=0.191  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HH
Q 015348          246 FGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SV  324 (408)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  324 (408)
                      ...++.+++.+..+++.||+++|+.+..+.....+..+....           ..+.+......+..+++.....+. ..
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~   74 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL-----------SSNITVLIIARFLQGFGAAFALVAGAA   74 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            446778888999999999999999887776666555433211           112223334445556665555566 78


Q ss_pred             HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          325 YIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       325 ~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      +..|..|+++|++..++.+...+++..+++.+.+.+.+..+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  115 (141)
T TIGR00880        75 LIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG  115 (141)
T ss_pred             HHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc
Confidence            89999999999999999999999999999999999987654

>PRK09848 glucuronide transporter; Provisional

Probab=98.98  E-value=3.8e-09  Score=99.46  Aligned_cols=139  Identities=17%  Similarity=0.146  Sum_probs=106.2

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      ++|+++.+|.++...++......+..++ .+++++++||     +|+|+.+.++.++..++.+.+.+.+  ..+.+.++.
T Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-----~g~~~~~~~g~~~~~i~~~~~~~~~--~~~~~~~~~  324 (448)
T PRK09848        252 LFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-----IGKKNTFLIGALLGTCGYLLFFWVS--VWSLPVALV  324 (448)
T ss_pred             eeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHHHHcC--chhHHHHHH
Confidence            4677778888776655544443444444 8899999999     9999999999888888777766543  225677777


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSP  151 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~  151 (408)
                      ..++.|+|.+...+...++..|..|+++  .|..++++|..++..+....+|..+|+.+.+.+.+..|+
T Consensus       325 ~~~l~g~G~~~~~~~~~al~~~~~~~~~--~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        325 ALAIASIGQGVTMTVMWALEADTVEYGE--YLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhH--HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7888999999999999999999887653  111112468899999999999999999999988876665

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.97  E-value=2.3e-09  Score=112.68  Aligned_cols=121  Identities=8%  Similarity=0.007  Sum_probs=90.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHH
Q 015348          238 SVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFF  317 (408)
Q Consensus       238 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
                      ...++..+...+..++..++.|+++||+++|+++.................       . ...+++.++...++.+++..
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~-------~-~~~s~~~l~~~~~l~gi~~a  123 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYG-------F-HLNSVPLLFAALFLMGIHSA  123 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH-------H-HHhhHHHHHHHHHHHHHHHH
Confidence            456777888889999999999999999999987643222222221111110       0 01233456666777788887


Q ss_pred             hhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          318 KILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       318 ~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ...|. .+++.+..|++++++++|+.++..++|..+||.++|++.+..|.
T Consensus       124 ~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~  173 (1140)
T PRK06814        124 LFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNF  173 (1140)
T ss_pred             hhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            78888 99999999999999999999999999999999999999987653

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.95  E-value=2.3e-08  Score=93.70  Aligned_cols=156  Identities=15%  Similarity=0.162  Sum_probs=95.7

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHH-hccCcchHHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAI-LSQSSISIFTMS   81 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   81 (408)
                      +.|+++++|.+..+.+...++......+ +++.|+++||     .+||+.+..+.++..+....... ... ..+....+
T Consensus       267 p~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-----~grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  340 (432)
T PRK10406        267 QKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-----IGRRTSMLCFGSLAALFTVPILSALQN-VSSPYAAF  340 (432)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHH
Confidence            4567778899999998888776644444 8899999999     99998877765544333322211 110 11233222


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHH-HHHHHHHHHHHHhhcCC-hhhHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSM-GGVLGNLLVGFAIDRFS-PPSMFLFFG  159 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~ig~~l~~~l~~~~g-~~~~f~i~~  159 (408)
                      ....+..+..+.......++..|.+|++.         |++..++.+...++ .....|.+.+.+ +..| |...++..+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~e~fp~~~---------r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~  410 (432)
T PRK10406        341 GLVMCALLIVSFYTSISGILKAEMFPAQV---------RALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVT  410 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCc---------cchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHH
Confidence            22233334444444455678899999864         99999988766554 234477777755 4445 555666666


Q ss_pred             HHHHHHHHHhhhcccc
Q 015348          160 LLVVLQFFITIAVRES  175 (408)
Q Consensus       160 ~~~~~~~~~~~~~~e~  175 (408)
                      +..++..+..++++++
T Consensus       411 ~~~~i~~~~~~~l~~~  426 (432)
T PRK10406        411 LMAVVAFLVSLMLHRK  426 (432)
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            6666665555555443

>PRK15075 citrate-proton symporter; Provisional

Probab=98.94  E-value=1.7e-08  Score=94.72  Aligned_cols=135  Identities=16%  Similarity=0.079  Sum_probs=91.9

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHH-HHHHhccCcchHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWL-AIAILSQSSISIFTM   80 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~   80 (408)
                      .+.|+++++|.++.+.++......+..++ .+++|+++||     +|||+.+..+.....+... ....... ..+....
T Consensus       261 ~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-----~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  334 (434)
T PRK15075        261 TPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-----IGRRPVLIAFTVLAILTAYPALSWLVA-APSFARM  334 (434)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHc-CCchHHH
Confidence            34567777899999988887777665555 8899999999     9999987776544332221 1111111 1144444


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHH-HHHHHHHHHHHHHhhcCChh
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSS-MGGVLGNLLVGFAIDRFSPP  152 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~ig~~l~~~l~~~~g~~  152 (408)
                      .....+.+++.+...+....++.|..|++.         |++..++.+.... ++..++|.+.+++.+..|++
T Consensus       335 ~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~---------rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        335 LAVELWLSFLYGSYNGAMVVALTEVMPAEV---------RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHCCCCc---------cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            444566667777777666688899998764         8888887544333 45777999999999988864

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=1.6e-07  Score=85.76  Aligned_cols=306  Identities=11%  Similarity=0.041  Sum_probs=179.1

Q ss_pred             cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCc
Q 015348           32 KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMT  111 (408)
Q Consensus        32 ~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~  111 (408)
                      ..+.+.+.|+     .+.|..++++........+...+.     |-+.++..-.+.|+|.++.+...-.++.+..+++. 
T Consensus        67 ~l~~psiv~~-----i~~K~~lv~ga~~y~~f~~gfl~~-----N~y~~yfssallG~Gaallw~GqG~ylt~~st~~t-  135 (461)
T KOG3098|consen   67 CLFAPSIVNF-----LGPKWALVIGATCYAAFPLGFLFP-----NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRET-  135 (461)
T ss_pred             HHhhHHHHHH-----hhHHHHHHHHhHHHHHHHHHHHhc-----chHHHHHHHHHhhhhHHheecccceehhhcCChhh-
Confidence            6788899999     999999999988887766665554     56677888999999999988888888988888764 


Q ss_pred             cchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--------CChh-h----------HHHHHHHHHHHHHHH---h
Q 015348          112 SSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR--------FSPP-S----------MFLFFGLLVVLQFFI---T  169 (408)
Q Consensus       112 ~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~--------~g~~-~----------~f~i~~~~~~~~~~~---~  169 (408)
                              +.+..++.......+.++|...-..+...        .+.+ .          ...+.+++.....+.   .
T Consensus       136 --------ie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~  207 (461)
T KOG3098|consen  136 --------IERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINF  207 (461)
T ss_pred             --------HHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhe
Confidence                    77778888888888888776554333211        1111 0          111222222221111   1


Q ss_pred             hhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEe--ccCC-ChhhHHHHHHH
Q 015348          170 IAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQ--NLKI-RSSVLGISKVF  246 (408)
Q Consensus       170 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~-~~~~~g~~~~~  246 (408)
                      .+.|.+.....++..++..++.++...+.+++|+...+....+..+..........|....-  ..+. +....++....
T Consensus       208 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~  287 (461)
T KOG3098|consen  208 DFLPSKDVVNCKSSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIG  287 (461)
T ss_pred             eecCccchhhhhhhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHH
Confidence            22333222111111113566777778888899988777766655444333333333322211  1222 33445556666


Q ss_pred             HHHHHHHHHHHHHHhhcc---CCCceehHHHHHHHHHHHHHhHhhhc-ccccc------cCcCceEeehhhhHHHHHHHH
Q 015348          247 GQAAMLLWGVIYNSGLKS---VSPRKLISAIQAMMAVFMISDVLFVK-GVYRE------MGVPDSLYVLIFSSLLEVMFF  316 (408)
Q Consensus       247 ~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~  316 (408)
                      .+++.+.+....+.+.||   +|+++.+..+..+.....++...-.. ..+..      .-.........+..+..|++.
T Consensus       288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D  367 (461)
T KOG3098|consen  288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD  367 (461)
T ss_pred             HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence            777788777777766654   67777777776665555444222111 11000      001112223444556677777


Q ss_pred             HhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 015348          317 FKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLG  357 (408)
Q Consensus       317 ~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~  357 (408)
                      ..+... +..+.... +++|..++++.-.-..++..++-...
T Consensus       368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~  408 (461)
T KOG3098|consen  368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS  408 (461)
T ss_pred             HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence            666666 77777777 56777777777666666665544433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.94  E-value=1.4e-08  Score=97.04  Aligned_cols=125  Identities=10%  Similarity=0.084  Sum_probs=94.1

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHH
Q 015348          234 KIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEV  313 (408)
Q Consensus       234 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
                      +.+..+.+++.....++.+++.++.+++.||+|||+.+..+.++..+..+..... .  +  .........+....+..|
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~-~--~--~~~~~~~~~~~~~r~l~G  126 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS-P--G--SSPKSVMATLCFWRFWLG  126 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-c--C--cccchHHHHHHHHHHHHH
Confidence            4566677889999999999999999999999999999888777666654442220 0  0  000001224555566677


Q ss_pred             HHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          314 MFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       314 ~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                      ++.+...|. ..+++|..|++.||+..++.+....+|..+++.++..+...
T Consensus       127 ~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~  177 (502)
T TIGR00887       127 VGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAG  177 (502)
T ss_pred             HHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777666666 89999999999999999999999999999999988877653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.92  E-value=5.7e-08  Score=82.05  Aligned_cols=158  Identities=17%  Similarity=0.140  Sum_probs=118.5

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC---cchHHHH
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS---SISIFTM   80 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~   80 (408)
                      +-.+|+.+|.|.+|...+.+...++..+.++.|.+.||     +|.+.++.+|.+...++...+...-..   ..++|.+
T Consensus        25 S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~-----~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~   99 (250)
T PF06813_consen   25 SPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDR-----FGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM   99 (250)
T ss_pred             hHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence            34588999999999999999988887789999999999     999999999999999999888765432   2468888


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGL  160 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~  160 (408)
                      .+..++.+.+.+..+.+......+.+|+          +||++.++.-....++..+-..+...+.+...-+..+.+.-.
T Consensus       100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP~----------~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~  169 (250)
T PF06813_consen  100 CLFLFLGGNSSCWFNTASLVTCVRNFPR----------SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVL  169 (250)
T ss_pred             HHHHHHHcccHHHhhhHHHHHHHHhCcc----------ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            8888888888888877765666677774          399999998888888887776666666555333333333333


Q ss_pred             HHHHHHHHhhhccccc
Q 015348          161 LVVLQFFITIAVRESA  176 (408)
Q Consensus       161 ~~~~~~~~~~~~~e~~  176 (408)
                      ...+.++..+++++.+
T Consensus       170 ~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  170 PAVVCLVAMFFVRPVP  185 (250)
T ss_pred             HHHHHHHHhhheeccC
Confidence            3444444455555544

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.92  E-value=1.5e-08  Score=84.62  Aligned_cols=149  Identities=15%  Similarity=0.206  Sum_probs=110.8

Q ss_pred             hhhhhccCCCHHHHHHHHHhhc-ccccccchheeecccccccCCcchhHHHHHH-HHHHHHHHHHHHhccCcchHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQHRVPYIAIGA-FLQAVSWLAIAILSQSSISIFTMSL   82 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   82 (408)
                      .++++++|+|+.+.+.+.+... ++.+.+|+.|.++||     +||+-+.+.+. +...++.....++.      +.=..
T Consensus       289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-----~G~n~~wv~~a~~~tl~~H~~l~Ft~------lsPy~  357 (459)
T KOG4686|consen  289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-----YGFNLWWVASACILTLLGHSGLFFTF------LSPYT  357 (459)
T ss_pred             HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-----hcceehhHHHHHHHHHHHhhhHHhhh------ccHHH
Confidence            4578999999999999888777 677779999999999     99998766554 44455555544433      23356


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC---hhhHHH-HH
Q 015348           83 FLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS---PPSMFL-FF  158 (408)
Q Consensus        83 ~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g---~~~~f~-i~  158 (408)
                      ...+.|+.++........+++...|+++         .|++.+..+...++|-.+-|+++|++.+..|   |-..|. +.
T Consensus       358 ~m~~lGLsysllAcslWP~va~~vpE~q---------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~  428 (459)
T KOG4686|consen  358 SMTFLGLSYSLLACSLWPCVASLVPEEQ---------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII  428 (459)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhhhCCHHH---------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence            7788899888887777788889999875         9999999999999999999999999998765   433443 33


Q ss_pred             HHHHHHHHHHhhhcc
Q 015348          159 GLLVVLQFFITIAVR  173 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~  173 (408)
                      +...+....+.+.+.
T Consensus       429 ~~~aL~svgil~~~N  443 (459)
T KOG4686|consen  429 GLMALTSVGILFYLN  443 (459)
T ss_pred             HHHHHHHHHHHhhee
Confidence            444444444444443

>TIGR00898 2A0119 cation transport protein

Probab=98.92  E-value=1.2e-08  Score=97.74  Aligned_cols=124  Identities=10%  Similarity=0.060  Sum_probs=98.3

Q ss_pred             EEEeccCCC---hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEee
Q 015348          228 YQTQNLKIR---SSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYV  304 (408)
Q Consensus       228 ~~~~~~g~~---~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (408)
                      ...++++.+   ..+.++..+...++.+++.++.|++.||+|+|+.+..+.++..+..+...+           ..+.+.
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~-----------~~~~~~  182 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF-----------SPNYTV  182 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-----------cccHHH
Confidence            355668887   888999999999999999999999999999999988887776665544221           123334


Q ss_pred             hhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          305 LIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALAS  362 (408)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~  362 (408)
                      +....+..+++.+...+. .+++.|..|+++|+...++......+|..+++.+++.+.+
T Consensus       183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  241 (505)
T TIGR00898       183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD  241 (505)
T ss_pred             HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            555566677777666666 8899999999999999999988888999998888776654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.91  E-value=4.7e-09  Score=92.88  Aligned_cols=128  Identities=13%  Similarity=0.049  Sum_probs=102.1

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      +.+++|+|+.|.+++.++..+.+.+..+..|.+.||+|.|+....+.++..+-.+...+.       ...++. +.+...
T Consensus        40 i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a-------~~~~~~-~~ll~~  111 (417)
T COG2223          40 IKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFA-------VTYPST-WQLLVI  111 (417)
T ss_pred             hccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHH-------ccCCch-HHHHHH
Confidence            447899999999999999999999999999999999999999888877765544432211       011111 355556


Q ss_pred             HHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          309 SLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      .+..|++.+.+......+++..|||++|.+.|++. .+|+|..+...++..+....|
T Consensus       112 gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g  167 (417)
T COG2223         112 GLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG  167 (417)
T ss_pred             HHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence            66667766666666888999999999999999999 999999999999999998877

>TIGR00901 2A0125 AmpG-related permease

Probab=98.91  E-value=4.3e-08  Score=89.40  Aligned_cols=127  Identities=13%  Similarity=0.106  Sum_probs=83.8

Q ss_pred             EeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC-----CCceeh-HHHHHHHHHHHHHhHhhhcccccccCcCceEe
Q 015348          230 TQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSV-----SPRKLI-SAIQAMMAVFMISDVLFVKGVYREMGVPDSLY  303 (408)
Q Consensus       230 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      .++.|+|.++.|+.... .+...+ .+++|++.||+     ||||.+ ..+.+..++......+ ..      .. ...+
T Consensus        15 ~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~-~~------~~-~~l~   84 (356)
T TIGR00901        15 LRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF-LV------PS-TDLP   84 (356)
T ss_pred             HHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc-CC------cc-hhHH
Confidence            44579999999988655 333333 78899999997     777764 4444444443322211 00      00 1111


Q ss_pred             ehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          304 VLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      .+....+..+.......|. .+++.|..|+++|+++.|+.....++|..+++.+++.+.+..|.
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~  148 (356)
T TIGR00901        85 LLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFA  148 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            2222222333333333444 88999999999999999999999999999999999999988773

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.90  E-value=3.2e-10  Score=101.08  Aligned_cols=123  Identities=12%  Similarity=0.155  Sum_probs=106.4

Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHH
Q 015348          232 NLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLL  311 (408)
Q Consensus       232 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                      .+|.++...|++.....+...+.+++.|.+.||++|++++..+..+-..+.+..           +.....|.+.+.-.+
T Consensus        62 ~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~-----------~fs~~Fwq~~l~R~~  130 (493)
T KOG1330|consen   62 YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFAS-----------GFSNHFWQVLLCRGF  130 (493)
T ss_pred             hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            378899999999999999999999999999999999999998888777766552           222445566677788


Q ss_pred             HHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          312 EVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       312 ~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      .|+|.+.+.|. .+++++.+|+++|++++++++.....|..+|-..+..+.++.+
T Consensus       131 vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  131 VGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             hccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            89999999999 9999999999999999999999999999999888888887765

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.90  E-value=1.3e-08  Score=90.27  Aligned_cols=153  Identities=14%  Similarity=0.219  Sum_probs=125.7

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      |-++++|+|..++.++.....+..+. ..++|++.||     +|.|+++..+.++..+.++...+..    ....+.++-
T Consensus       278 fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-----fg~k~vl~~~lvi~~~~~~~~~~~~----~~~~f~i~g  348 (438)
T COG2270         278 FGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-----FGSKPVLMIGLVILSIAALYLIFLE----GELDFWILG  348 (438)
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCceeehHHHHHHHHHHHHHHHcc----ccHHHHHHH
Confidence            45569999999999998888865555 8999999999     9999999999988887777766665    455556777


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhhHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS-PPSMFLFFGLLVV  163 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g-~~~~f~i~~~~~~  163 (408)
                      .+.|+..|..+....++..+..|+++         -++.+++++...-.++..||.+-+.+.+..| -|..+....++..
T Consensus       349 ll~g~s~G~~qA~SRSy~~~lvp~~k---------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~  419 (438)
T COG2270         349 LLVGTSLGGAQASSRSYLARLVPKGK---------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLL  419 (438)
T ss_pred             HHHHHhcchHHHHHHHHHHHhCCCcc---------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            88899999999999999999999875         7888999999999999999999999888755 6666666666666


Q ss_pred             HHHHHhhhccccc
Q 015348          164 LQFFITIAVRESA  176 (408)
Q Consensus       164 ~~~~~~~~~~e~~  176 (408)
                      +..+...++|++.
T Consensus       420 iGl~~L~~v~~~~  432 (438)
T COG2270         420 IGLLLLLRVKVPG  432 (438)
T ss_pred             hhHhhEEeecCCC
Confidence            6666666677763

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.85  E-value=5.4e-07  Score=81.07  Aligned_cols=304  Identities=16%  Similarity=0.143  Sum_probs=159.3

Q ss_pred             HHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHhhHH
Q 015348           21 LQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVAND   99 (408)
Q Consensus        21 ~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~   99 (408)
                      +.-+-.+|.++ +..+-+..+|+|   +++|.+  ....+..++.++.++++    +.+.-++..++.+++.+......-
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v~---y~~Ri~--~~~~l~~~g~l~va~~~----~v~~~l~Gv~las~ssg~GE~tfL  134 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRVP---YWIRIL--ICVALSAAGMLLVAFSP----SVWVRLLGVVLASLSSGLGEVTFL  134 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhcc---chHHHH--HHHHHHHHHHhheeecc----chhHHHHHHHHHhhhhhhhHHHHH
Confidence            33333356665 777778889854   555543  44456777888888888    888889999999999999988776


Q ss_pred             HHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHHhhh-cccccc
Q 015348          100 ALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID-RFSPPSMFLFFGLLVVLQFFITIA-VRESAL  177 (408)
Q Consensus       100 a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~-~~g~~~~f~i~~~~~~~~~~~~~~-~~e~~~  177 (408)
                      ++.. ..++.             ..+.+..+...++++|+..-..+.+ ..+.|..+.....++++..+..++ +|+++.
T Consensus       135 ~lt~-~y~~~-------------~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~  200 (402)
T PF02487_consen  135 SLTH-FYGKS-------------SLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPT  200 (402)
T ss_pred             HHHH-hcCcc-------------ccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            6544 33322             1344444666777777766555544 244577888887777666555444 543321


Q ss_pred             cCC--CC------Ccc----------------hhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEecc
Q 015348          178 KLP--KS------QSN----------------VGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNL  233 (408)
Q Consensus       178 ~~~--~~------~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (408)
                      .++  +.      +++                ...++.++..+..+.  ....+.+..+.-+...........  ..+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~--ymiPL~lVY~aEY~InqGv~~tl~--fp~~~  276 (402)
T PF02487_consen  201 NRPYQESESEDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLW--YMIPLFLVYFAEYFINQGVAPTLL--FPNSF  276 (402)
T ss_pred             cCCCcccCCCCcccccccccccccccccccchhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhchHHHhc--CCccC
Confidence            110  00      000                001111222211111  111122222222333222222111  11112


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHH
Q 015348          234 KIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEV  313 (408)
Q Consensus       234 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
                      .-...++.+....+.+|.+++.--..    -+..|++... .++..+-.....+  ..+   +.+..+.+.++...+..|
T Consensus       277 ~~~r~~Y~~Y~~~YQ~GVFISRSS~~----~~rir~lwil-s~LQ~~nl~~~~l--~s~---~~fipsi~ivf~lif~eG  346 (402)
T PF02487_consen  277 FSPRDQYRWYQLLYQLGVFISRSSLP----FFRIRRLWIL-SLLQVINLVFLLL--QSW---YRFIPSIWIVFVLIFYEG  346 (402)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhccee----eeehhhHHHH-HHHHHHHHHHHHH--HHH---HHHhhHHHHHHHHHHHHH
Confidence            22345666777777777666643322    1223333322 2222222111111  001   111122233434444445


Q ss_pred             HHHH-hhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          314 MFFF-KILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALA  361 (408)
Q Consensus       314 ~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~  361 (408)
                      +..+ .++.....+.+..|+++|--.+|......++|..++..++-.+-
T Consensus       347 LlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  347 LLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4444 44444777788889999999999998888888888877765544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.84  E-value=9.6e-07  Score=81.86  Aligned_cols=256  Identities=11%  Similarity=0.057  Sum_probs=146.5

Q ss_pred             hhhccCC-----CHHHHHHHHHhhcccccc--cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHh--ccCcc--
Q 015348            7 LKDSLNV-----DPSTLQLLQNSANLPMVG--KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAIL--SQSSI--   75 (408)
Q Consensus         7 l~~~l~~-----s~~~~g~~~~~~~~~~~~--~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~--~~~~~--   75 (408)
                      ++|.+.+     +.+.+.++-+...+|..+  .++.+.+++|     ++|++++-.....+....+++++.  +..+.  
T Consensus        29 lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-----~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~  103 (472)
T TIGR00769        29 TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-----LSKEALFYTVISPFLGFFALFAFVIYPLSDLLH  103 (472)
T ss_pred             hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcC
Confidence            4566655     346788888877766544  6899999999     999998877666666555555544  11000  


Q ss_pred             -----------------------hHHHHHHHHHHHHHHHHHHHh-hHHHHHHhhccCCCccchhhccCcchhHHHHHHHH
Q 015348           76 -----------------------SIFTMSLFLLLSNLGASIAEV-ANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSS  131 (408)
Q Consensus        76 -----------------------~~~~~~~~~~l~g~~~~~~~~-~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  131 (408)
                                             +.|...+..+...+-...... ...++..|..+.++         -.|..+....+.
T Consensus       104 p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q---------akRfy~l~~~ga  174 (472)
T TIGR00769       104 PTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE---------AKRFYALFGLGA  174 (472)
T ss_pred             CcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---------HHHHHHHHHHHH
Confidence                                   244455556666665555554 66789999988764         778899999999


Q ss_pred             HHHHHHHHHHHHHHhhc--------CChh----hHHHHHHHHHHHHHHHhhhcccc----cc------cCCCCCcchhHH
Q 015348          132 SMGGVLGNLLVGFAIDR--------FSPP----SMFLFFGLLVVLQFFITIAVRES----AL------KLPKSQSNVGIR  189 (408)
Q Consensus       132 ~~g~~ig~~l~~~l~~~--------~g~~----~~f~i~~~~~~~~~~~~~~~~e~----~~------~~~~~~~~~~~~  189 (408)
                      ++|.++++.+..++.+.        ..|.    ..+.+.++...+...+...+.+.    +.      ++++++++.+..
T Consensus       175 nlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~  254 (472)
T TIGR00769       175 NVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTM  254 (472)
T ss_pred             HHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCCCCHH
Confidence            99999999888887631        1232    23344444433333333332211    11      000111112233


Q ss_pred             HHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCCh----hhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015348          190 AQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRS----SVLGISKVFGQAAMLLWGVIYNSGLKSV  265 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~g~~~~~~~~~~~~~~~~~~~l~~~~  265 (408)
                      +.   ++..+++|.++.+.+...+............-....+.. -|+    ...|.+....++..++..++.+++.+|+
T Consensus       255 es---~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~-p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~  330 (472)
T TIGR00769       255 ES---LKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQY-PSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKY  330 (472)
T ss_pred             HH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33   444588898777766655533222222111100011111 122    2234445555666666667779999999


Q ss_pred             CCceehHHHHHHHHH
Q 015348          266 SPRKLISAIQAMMAV  280 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~  280 (408)
                      |.+....+.-++..+
T Consensus       331 Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       331 GWLTAALITPLVMLL  345 (472)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            987766555554444

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.83  E-value=6.2e-08  Score=93.81  Aligned_cols=158  Identities=15%  Similarity=0.160  Sum_probs=125.3

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhc-ccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCc----chH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSS----ISI   77 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~----~~~   77 (408)
                      +..|+++.+|.+.++...+...+. +.+++..++|.++|++    +||++.+.++.++..++..++++.....    ...
T Consensus        10 LvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~----lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~   85 (654)
T TIGR00926        10 LVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGW----LGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD   85 (654)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence            356788889999988877777766 7778889999999994    8999999999999999988877653211    122


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-------CC
Q 015348           78 FTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR-------FS  150 (408)
Q Consensus        78 ~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~-------~g  150 (408)
                      ...+.+..+..+|.+...+...+...|..+++++ +     +|.+...+++.+.++|+.+++.+.+++.+.       .+
T Consensus        86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~-~-----~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~  159 (654)
T TIGR00926        86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL-S-----LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC  159 (654)
T ss_pred             HHHHHHHHHHHhhccccccCchhhhHhhcCccch-h-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc
Confidence            3456777888889999999999999998876431 2     488889999999999999999998888744       36


Q ss_pred             hhhHHHHHHHHHHHHHHHhh
Q 015348          151 PPSMFLFFGLLVVLQFFITI  170 (408)
Q Consensus       151 ~~~~f~i~~~~~~~~~~~~~  170 (408)
                      |...|.+.++..++..+...
T Consensus       160 ~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       160 YPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            99999999888887766544

>TIGR00896 CynX cyanate transporter

Probab=98.83  E-value=4.8e-08  Score=89.09  Aligned_cols=125  Identities=14%  Similarity=0.055  Sum_probs=93.6

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      ...+++|.+..+.|+..+...++..++.++.|++.||+++|+.+..+.....+..... .          . +..+.+..
T Consensus        25 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~----------~-~~~~~l~~   92 (355)
T TIGR00896        25 QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S----------A-PGTALLFA   92 (355)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H----------h-ccHHHHHH
Confidence            3566789999999999999999999999999999999999999888766555443331 1          1 12223334


Q ss_pred             hHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          308 SSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      ..+..+++.+...+. .....+..| ++|++..|+.+...++|..+++.+.+.+.+..+
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~  150 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG  150 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            445555555444444 556677775 689999999999999999999999998887643

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.83  E-value=4.3e-07  Score=75.40  Aligned_cols=306  Identities=14%  Similarity=0.074  Sum_probs=159.0

Q ss_pred             hhhhhccCCCHHHHHHHHHhhccc-ccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLP-MVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~-~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      ||+-+++|.-..|+|.+.-..... .++..+.|.++|+     .|||+--+.-++...++++ .-.++    .+-.+.+.
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-----qGRKracvtycitYiLsCi-TKhSp----qYkVLmVG  130 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-----QGRKRACVTYCITYILSCI-TKHSP----QYKVLMVG  130 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-----hccccceeeehHHHHHHHH-hhcCC----ceEEEeeh
Confidence            456677888888988877666643 3448899999999     9999865544444444332 12333    78888999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHH--------HHHHHHHHHHHHHHHHhhcC--Chhh
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWM--------SSSMGGVLGNLLVGFAIDRF--SPPS  153 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~g~~ig~~l~~~l~~~~--g~~~  153 (408)
                      |++.|+..+....+..++...-..+          +|+.-+-|...        +..+-.+++.+.+..+.+.+  |.-.
T Consensus       131 R~LGGiaTsLLFSaFEsWliaEHne----------kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVA  200 (454)
T KOG4332|consen  131 RVLGGIATSLLFSAFESWLIAEHNE----------KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVA  200 (454)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhh----------ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCC
Confidence            9999999999988887775543221          13322222221        22333444555555666654  4555


Q ss_pred             HHHHHHHHHHHHHHHhh-hcccccccCCCCCcchhHHHHHH-HHHHhcccchhHHHHHHHHhhh-cccccccceeEEEEE
Q 015348          154 MFLFFGLLVVLQFFITI-AVRESALKLPKSQSNVGIRAQLS-ELSAALRKPEIMYSVAWFAASY-SIIPVLTGTMFFYQT  230 (408)
Q Consensus       154 ~f~i~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  230 (408)
                      +|-..+-+..+.....+ -..|...++.+   +++...+.+ ..+.+..++++..+..+..+.- ........|.|    
T Consensus       201 PFdAAacfLaigmAvil~~W~ENygdps~---~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTP----  273 (454)
T KOG4332|consen  201 PFDAAACFLAIGMAVILSSWSENYGDPSE---NKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTP----  273 (454)
T ss_pred             chHHHHHHHHHHHHHHHhhhhhccCChhh---hHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecc----
Confidence            55443333333322222 24444332222   112222222 1223345555554444443311 11111112222    


Q ss_pred             eccCCCh--hhHHHHHHHHHHHHHHHHHHHHHhhccCCCc--eehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehh
Q 015348          231 QNLKIRS--SVLGISKVFGQAAMLLWGVIYNSGLKSVSPR--KLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLI  306 (408)
Q Consensus       231 ~~~g~~~--~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (408)
                       .+.=++  .--|++.+...+++++|+-+..|+..|...|  ..+.+...+......+........+.. .  .....++
T Consensus       274 -aLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~k-e--s~~~s~i  349 (454)
T KOG4332|consen  274 -ALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSK-E--SPSESLI  349 (454)
T ss_pred             -cCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCc-C--CchHHHH
Confidence             122112  2357788888899999999998887765543  234444444444333332211111111 1  1111122


Q ss_pred             hhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHH
Q 015348          307 FSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFV  342 (408)
Q Consensus       307 ~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~  342 (408)
                      .+.. .-...+.+.|. .-+-.+..|++.|++.+-.+
T Consensus       350 ~F~~-~E~cvGlfwPSimkmRsqyIPEearstimNfF  385 (454)
T KOG4332|consen  350 GFCL-FEACVGLFWPSIMKMRSQYIPEEARSTIMNFF  385 (454)
T ss_pred             HHHH-HHHHHhhcchHHHHHHHhhCCHHHHhhhhhhe
Confidence            2222 22233455676 66778889999998765443

>PRK09669 putative symporter YagG; Provisional

Probab=98.78  E-value=8.9e-08  Score=90.09  Aligned_cols=137  Identities=11%  Similarity=0.118  Sum_probs=97.3

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLF   83 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (408)
                      +|.++.++ ++...+.+.....++.++ .+++++++||     +|||+.+..+.+...+......+.+  ..+.+.+++.
T Consensus       254 y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-----~gk~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  325 (444)
T PRK09669        254 YYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGK-----FDRVRAFKWTIVAFVILSALIFFIP--PSNVWLIFAL  325 (444)
T ss_pred             eeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence            34443443 333344444444444445 6889999999     9999998888766554444333332  2367777888


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 015348           84 LLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSP  151 (408)
Q Consensus        84 ~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~  151 (408)
                      .++.|++.+...+...++++|..|.++  .+..++..|...+.......+|..+|+.++|.+.+..|+
T Consensus       326 ~~i~g~~~~~~~~~~~am~ad~~d~~e--~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        326 NILFNFIQNLTTPLQWSMFSDVVDYEE--KRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhh--hhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            889999999999999999999987544  222233567788888889999999999999999888776

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.76  E-value=4.1e-08  Score=91.33  Aligned_cols=131  Identities=14%  Similarity=0.097  Sum_probs=110.1

Q ss_pred             EeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhH
Q 015348          230 TQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSS  309 (408)
Q Consensus       230 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
                      ..+++++.++-+++......|.+++.+..+.+.||+|.|+++..+.++.++..++..+.         .....+.++..-
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~a---------a~~~~~~~~~~R  135 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLA---------ASIGFYLLLVLR  135 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHH---------HHhcchhhHHHH
Confidence            34578899999999999999999999999999999999999999988888776653321         112222456677


Q ss_pred             HHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCC
Q 015348          310 LLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY-TGVTGD  369 (408)
Q Consensus       310 ~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~-~g~~~~  369 (408)
                      +..|++.+...|. ..+..+-.|+++|++..++..+...+|..++..++|.+.+. +|++..
T Consensus       136 ~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~si  197 (466)
T KOG2532|consen  136 FLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSI  197 (466)
T ss_pred             HHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchH
Confidence            8889888888888 88899999999999999999999999999999999999998 776543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=9e-08  Score=90.17  Aligned_cols=149  Identities=12%  Similarity=0.235  Sum_probs=128.5

Q ss_pred             hccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 015348            9 DSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLS   87 (408)
Q Consensus         9 ~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (408)
                      ++.+.+..+.+.+.++....-.+ .++.|+++|+.+   .+++.+..++.+..+++...+.+.+    +++.+...-.+.
T Consensus       326 ~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~---~~~~~~~~~~ll~~gl~~~~~p~~~----~~~~l~~~~~~f  398 (509)
T KOG2504|consen  326 KSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG---IRALVLFLLTLLIAGLARLFLPFAT----TYVGLIVFSILF  398 (509)
T ss_pred             hhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc---cchHHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHH
Confidence            47899999999999999966665 999999999932   2355667777788888888888888    999999999999


Q ss_pred             HHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhhHHHHHHHHHHHHH
Q 015348           88 NLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS-PPSMFLFFGLLVVLQF  166 (408)
Q Consensus        88 g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g-~~~~f~i~~~~~~~~~  166 (408)
                      |+..+.........+.|..+.++         ...+.++......++.++||+++|.+.+..| |...|...+...+++.
T Consensus       399 G~~~g~~~~l~~~i~~~~~g~~~---------l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~  469 (509)
T KOG2504|consen  399 GFCVGSFSSLTPVILVDLVGLEK---------LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA  469 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHcChhh---------cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHH
Confidence            99999998888778889988764         8888999999999999999999999998877 9999999999998888


Q ss_pred             HHhhhcc
Q 015348          167 FITIAVR  173 (408)
Q Consensus       167 ~~~~~~~  173 (408)
                      ..++..+
T Consensus       470 ~~~~~~~  476 (509)
T KOG2504|consen  470 VLLLILR  476 (509)
T ss_pred             HHHHHhH
Confidence            7777666

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.72  E-value=1.3e-07  Score=88.00  Aligned_cols=137  Identities=15%  Similarity=0.096  Sum_probs=88.7

Q ss_pred             EeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhc----cCCCceehHHHHHHHHHHHHHhHhhhcccccccCc----Cce
Q 015348          230 TQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLK----SVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGV----PDS  301 (408)
Q Consensus       230 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  301 (408)
                      .+.+|.+....+.+.....+..++..++.|+++|    |+|||+.+...........+..+..........+.    ...
T Consensus        31 l~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~  110 (477)
T TIGR01301        31 VQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTK  110 (477)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccch
Confidence            4568999999999999999999999999999999    59999988765444333332222111110000000    000


Q ss_pred             E---eehhhh-HHHHHHHHHhhhhHHHHHHHhcCCchh--HHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCC
Q 015348          302 L---YVLIFS-SLLEVMFFFKILPFSVYIAQVCPPGCE--GSIMAFVMSAVALAFIVSGYLGVAL--ASYTGV  366 (408)
Q Consensus       302 ~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~--g~~~g~~~~~~~lg~~ig~~~~g~l--~~~~g~  366 (408)
                      .   +..+.. .+..........|..+++.|.+|+++|  +.+++..+...++|+.+|+.+++..  .+.++.
T Consensus       111 ~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~  183 (477)
T TIGR01301       111 PRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPF  183 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence            0   011111 122222233444668899999998865  6799999999999999999999875  444443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.68  E-value=3.3e-07  Score=81.51  Aligned_cols=137  Identities=18%  Similarity=0.108  Sum_probs=103.7

Q ss_pred             hhhhhh--ccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHH
Q 015348            4 NFFLKD--SLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTM   80 (408)
Q Consensus         4 ~~~l~~--~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (408)
                      ..|+++  ++|.++.+.+...+.......+ ..+.++++||     +++|+.+.++..+..++.++....+    +... 
T Consensus       164 ~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-----~g~~~~l~~~~~l~~~~~~l~~~~~----~~~~-  233 (310)
T TIGR01272       164 VNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-----ISQGRYLAFNAFLAVLLSIGAALTH----GYVA-  233 (310)
T ss_pred             HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHHHHHHHHHHcC----CHHH-
Confidence            456654  3799999999999988877777 8899999999     9999988888877777765555544    3322 


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGL  160 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~  160 (408)
                      .....+.|++.+...|...+...+..+++.          ++..++. ....+|..++|.+.|.+.+..|.+..|++...
T Consensus       234 ~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~----------~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~  302 (310)
T TIGR01272       234 MWFVLALGLFNSIMFPTIFSLALNALGRHT----------SQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP  302 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----------hhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence            235557889999999988788877776542          3334443 56779999999999999999999998875544


Q ss_pred             H
Q 015348          161 L  161 (408)
Q Consensus       161 ~  161 (408)
                      .
T Consensus       303 ~  303 (310)
T TIGR01272       303 C  303 (310)
T ss_pred             H
Confidence            3

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.63  E-value=1e-07  Score=89.17  Aligned_cols=139  Identities=17%  Similarity=0.232  Sum_probs=113.6

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      ..||.++.+|.+ ...+.+.....++.++ .|++++++||     +|+|+.+..+..+.+++.+++.+.+.  .+.+.++
T Consensus       248 ~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-----~gk~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  319 (428)
T PF13347_consen  248 LPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-----FGKKKVYIIGLLLAALGFLLLFFLGP--GSPWLVL  319 (428)
T ss_pred             HHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-----ccceeehhhhHHHHHHHHHHHHHHHh--hhHHHHH
Confidence            356777777777 5666666666666555 8999999999     99999999999999998888777642  3889999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSP  151 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~  151 (408)
                      +..++.|++.+...+...++++|..+.++  .|..+++.|..++.......+|..+++.+.+.+.+..|+
T Consensus       320 i~~~l~gi~~~~~~~~~~a~~ad~id~~e--~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  320 ILFILAGIGYGAFFVIPWAMLADVIDYDE--WKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHHHhHhhhcccccccccccccchhhHH--HhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999998765  222344678899999999999999999999988776555

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.62  E-value=8.8e-07  Score=81.34  Aligned_cols=134  Identities=21%  Similarity=0.240  Sum_probs=102.8

Q ss_pred             hhhhhhccC-CCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            4 NFFLKDSLN-VDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         4 ~~~l~~~l~-~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      +.|+ +|.| .+....+.+.++..+.-+. -.+.+++..|     +|.|+++.++.+..++=+.+++...+   +.+...
T Consensus       231 ~~yl-~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-----~g~~~ll~~a~~~~~vR~~l~a~~~~---~~~~~~  301 (400)
T PF03825_consen  231 SIYL-QELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-----FGIKWLLLLALVAYAVRWLLYAYFSD---PWPFIV  301 (400)
T ss_pred             HHHH-HHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHHhcC---CcHHHH
Confidence            4566 4555 7777778777665544333 4567888888     99999999999999998888888731   333322


Q ss_pred             ----HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHH-HHHHHHHHHHHHHHHhhcCChhhHH
Q 015348           82 ----LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMS-SSMGGVLGNLLVGFAIDRFSPPSMF  155 (408)
Q Consensus        82 ----~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~g~~ig~~l~~~l~~~~g~~~~f  155 (408)
                          ....+.|+..+........++.+..|++         .|++.+++++.. ..+|..+|..++|++.+++|-+..|
T Consensus       302 ~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~---------~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~  371 (400)
T PF03825_consen  302 ALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE---------LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF  371 (400)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc---------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence                2345799999999999999999999986         489999988764 6799999999999999987765543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.60  E-value=2.3e-07  Score=81.86  Aligned_cols=146  Identities=10%  Similarity=-0.019  Sum_probs=110.5

Q ss_pred             HHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhh
Q 015348          210 WFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFV  289 (408)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (408)
                      ..|+.+.......+.+.+..++.++.+..+.+++......+-.+.+...+++.||+|.|+-+..+..++++.+.+.... 
T Consensus        20 ~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pA-   98 (422)
T COG0738          20 SLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPA-   98 (422)
T ss_pred             HHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh-
Confidence            3334466666667777777888899999999999999999999999999999999999999999999888876663210 


Q ss_pred             cccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          290 KGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                             .....+.......+..+.+....-.. +.++....|++...+-..+.+.++.+|..++|.+++.+..+
T Consensus        99 -------a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils  166 (422)
T COG0738          99 -------ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS  166 (422)
T ss_pred             -------hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence                   00011112233333344444434444 77888999998899999999999999999999999999874

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.57  E-value=2.7e-07  Score=87.48  Aligned_cols=138  Identities=11%  Similarity=0.077  Sum_probs=88.8

Q ss_pred             ceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhc----cCCCcee-hHHHHHHHHHHHHHhHhhhcccccccC
Q 015348          223 GTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLK----SVSPRKL-ISAIQAMMAVFMISDVLFVKGVYREMG  297 (408)
Q Consensus       223 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (408)
                      ...++|+++.+|+++...|.+..+..+...+..++.|.++|    |+|+||. +..+....++...+... .   +. .+
T Consensus        27 ~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~-~---p~-~~  101 (473)
T PRK10429         27 MYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFS-A---HL-FE  101 (473)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHc-C---CC-CC
Confidence            34455677889999999999999999999999999999999    4587554 44454444444332211 0   00 10


Q ss_pred             cCceEeehhhhHHHH-HHHHHhhhhHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          298 VPDSLYVLIFSSLLE-VMFFFKILPFSVYIAQVC-PPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       298 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      ............+.. ........|..++..|.. ++++|.+..+......++++.+.+.+...+.+..|
T Consensus       102 ~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g  171 (473)
T PRK10429        102 GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVG  171 (473)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            000111122222222 233345567788999998 57899999998788888887777766666655555

>TIGR00788 fbt folate/biopterin transporter

Probab=98.53  E-value=3.6e-07  Score=86.22  Aligned_cols=155  Identities=11%  Similarity=0.022  Sum_probs=115.8

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhc--c----CcchHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILS--Q----SSISIF   78 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~--~----~~~~~~   78 (408)
                      +.++++|.|+.+.|.+.....+..++ ....+.+.+|     ++.|+.+.++.++.+++.+......  .    ...+.+
T Consensus       278 ~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-----~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~  352 (468)
T TIGR00788       278 ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-----FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEV  352 (468)
T ss_pred             EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCee
Confidence            44568999999999999888866555 7778888888     8999999999888887765532111  0    001344


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-----hhh
Q 015348           79 TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS-----PPS  153 (408)
Q Consensus        79 ~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g-----~~~  153 (408)
                      .....-++.+++.++...+...++.+..|++.         +|+.+++.+...++|..+++.+++.+.+..|     ++.
T Consensus       353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~---------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~  423 (468)
T TIGR00788       353 FVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC---------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNN  423 (468)
T ss_pred             eeeehhHHHHHHHHHHHccHHHHHHHhCCCCc---------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence            55666788999999999999999999999864         8999999999999999999999999998877     655


Q ss_pred             HHHHHHHHHHHH---HHHhhhccc
Q 015348          154 MFLFFGLLVVLQ---FFITIAVRE  174 (408)
Q Consensus       154 ~f~i~~~~~~~~---~~~~~~~~e  174 (408)
                      .+....+..+..   +....++|+
T Consensus       424 ~~~~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       424 LWLLILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCC
Confidence            555443333333   233335785

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.53  E-value=1.5e-06  Score=80.38  Aligned_cols=157  Identities=16%  Similarity=0.122  Sum_probs=109.3

Q ss_pred             hccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchH--H---HHHH
Q 015348            9 DSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISI--F---TMSL   82 (408)
Q Consensus         9 ~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~   82 (408)
                      ++-|+++.+..+........... ..+...+.||     .||||.++.+...+.+..+++..........  |   ..+.
T Consensus       298 ~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-----~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~  372 (485)
T KOG0569|consen  298 KTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-----LGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIA  372 (485)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            46788998888887777754444 8889999999     9999999999998888877766443211112  1   1234


Q ss_pred             HHHHHHHHHHHH-HhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 015348           83 FLLLSNLGASIA-EVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLL  161 (408)
Q Consensus        83 ~~~l~g~~~~~~-~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~  161 (408)
                      +.++..++.+.. .|...-+.+|.+|+.+         |..++++......+...+-...-..+.+.+|- ..|.+..+.
T Consensus       373 ~~~~~~~~f~~G~gpi~~fi~aELf~~~~---------R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~  442 (485)
T KOG0569|consen  373 AIFLFIISFAIGPGPIPWFIGAELFPQSA---------RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIP  442 (485)
T ss_pred             HHHHHHHhhhcCCCchhHHHHHHhCCccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHH
Confidence            444444444444 3444478889999865         99999988888777777766666666677776 667777777


Q ss_pred             HHHHHHHhh-hcccccccCC
Q 015348          162 VVLQFFITI-AVRESALKLP  180 (408)
Q Consensus       162 ~~~~~~~~~-~~~e~~~~~~  180 (408)
                      +++..+..+ .+||++.+..
T Consensus       443 ~~~~~i~~~~~lPETkgr~~  462 (485)
T KOG0569|consen  443 LAIFLIYLYRYLPETKGRTP  462 (485)
T ss_pred             HHHHHHHHHHhCcccCCCCH
Confidence            776665544 5999876543

>PRK11462 putative transporter; Provisional

Probab=98.51  E-value=7.9e-07  Score=83.82  Aligned_cols=139  Identities=12%  Similarity=0.105  Sum_probs=94.2

Q ss_pred             ceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCceeh-HHHHHHHHHHHHHhHhhhcccccccC
Q 015348          223 GTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKS----VSPRKLI-SAIQAMMAVFMISDVLFVKGVYREMG  297 (408)
Q Consensus       223 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (408)
                      .+..+|+++..|+++...|.+..+.-+-..+.-++.|+++||    +||||.. .++.+..++...+. +....    ++
T Consensus        30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ll-f~~p~----~s  104 (460)
T PRK11462         30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLA-YSTPD----LS  104 (460)
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHH-HhCCC----CC
Confidence            344556778899999999999999999999999999999996    4666554 44445554443332 11111    11


Q ss_pred             cCc-eEeehhhhHHHHHHHHHhhhhHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015348          298 VPD-SLYVLIFSSLLEVMFFFKILPFSVYIAQVCP-PGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       298 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ... ..+..+...+..........|..++..|.++ +++|++..+..+...++|..+++.+...+.+..|.
T Consensus       105 ~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~  175 (460)
T PRK11462        105 MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG  175 (460)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            111 1122222223333444556688899999987 58899999999999999998988887777777663

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.51  E-value=4.8e-07  Score=81.90  Aligned_cols=147  Identities=14%  Similarity=0.147  Sum_probs=115.3

Q ss_pred             CHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 015348           14 DPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGAS   92 (408)
Q Consensus        14 s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   92 (408)
                      +....|.+.+..-..-+. -.+..++.+|     .|.|+.++++..+.++=..++++++    +++.+...+.+.++-.+
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~r-----ig~k~~Lllag~i~~iRi~~~~~~~----~~~~i~~~klLH~~e~~  327 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINR-----IGAKNLLLLAGVIMAIRIIGSGFAT----NPWVISLIKLLHALEFP  327 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHT------SHHHHHHHHHHHHHHHH
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHh-----cChHhHHHHHHHHHHHHHHHHhhhc----chHHHHHHHHHHHHHHH
Confidence            335567666665533332 5567889999     9999999999999999999999999    99999999999999999


Q ss_pred             HHHhhHHHHHHhhccCCCccchhhccCcchhHHHH-HHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhhh
Q 015348           93 IAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFV-WMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIA  171 (408)
Q Consensus        93 ~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  171 (408)
                      ....+..-++.+..|++         ..++.+.+. +...++|.++.+.++|.+.|+.|.+..|++.+.+.+...++..+
T Consensus       328 l~lva~fkYI~~~fd~r---------lsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f  398 (412)
T PF01306_consen  328 LLLVAAFKYITAHFDKR---------LSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF  398 (412)
T ss_dssp             HHHHHHHHHHHHHS-GG---------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHh---------HHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence            99999999999998864         355666663 67889999999999999999999999999998887777666555


Q ss_pred             -ccccccc
Q 015348          172 -VRESALK  178 (408)
Q Consensus       172 -~~e~~~~  178 (408)
                       ++++++.
T Consensus       399 ~l~~~~~~  406 (412)
T PF01306_consen  399 TLKKDKKQ  406 (412)
T ss_dssp             HS--SSST
T ss_pred             eecCCCcc
Confidence             6665543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PTZ00207 hypothetical protein; Provisional

Probab=98.50  E-value=5.8e-07  Score=85.68  Aligned_cols=126  Identities=13%  Similarity=0.074  Sum_probs=85.0

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      ..+++|+|..+.+.+.......+ ...+..|++.||+|+|+++.++.+...+..+...+....     ....+.+.+.+.
T Consensus        53 L~~~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~-----~i~~s~~~l~l~  126 (591)
T PTZ00207         53 MQARYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE-----VIEGSVVRLSVY  126 (591)
T ss_pred             HHHHhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc-----cccCcHHHHHHH
Confidence            46678999999998776643333 456678999999999999999988887776553321110     011223344444


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIV-SGYLGVALA  361 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~i-g~~~~g~l~  361 (408)
                      ....+.+.+...+. ...+.+..| ++||++.|+......+|..+ ++...+.+.
T Consensus       127 r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        127 NGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556665544444 666778886 78899999999999999975 445555544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.45  E-value=1.6e-06  Score=79.49  Aligned_cols=140  Identities=17%  Similarity=0.185  Sum_probs=114.5

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMS   81 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (408)
                      ..||.+..+|-++.+............+. .+++..+++|     +|+|+.+.++.++..++.+++.+.+  .++.+..+
T Consensus       259 ~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-----~gkk~~~~~~~~~~~i~~~~~~f~~--~~~~~l~~  331 (467)
T COG2211         259 MVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-----FGKKKLFLIGLLLLAVGYLLLYFTP--AGSVVLIV  331 (467)
T ss_pred             hheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hchHHHHHHHHHHHHHHHHHHHhhc--CcchHHHH
Confidence            35777777888888887777777766666 7889999999     9999999999999999999998887  44788888


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSP  151 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~  151 (408)
                      +..++.+++.+...+...++++|..+.+|  -|...+.-|...+......=+|..++..+.|+..+..|+
T Consensus       332 ~~~~i~~~g~~~~~~l~wam~~d~vDyge--~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         332 VALIIAGVGTGIANPLPWAMVADTVDYGE--WKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHhhccccccHHHhcchhhHHH--HHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999887654  222333567778888888888999998888888776554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.43  E-value=3.6e-05  Score=67.67  Aligned_cols=124  Identities=13%  Similarity=0.138  Sum_probs=88.1

Q ss_pred             eccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHH
Q 015348          231 QNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSL  310 (408)
Q Consensus       231 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (408)
                      +++|++..+++.+...+...+.+...+.|.+.||+|||+......++....++.-.           . +....++..-+
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-----------~-~~~~~L~~GRv  129 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-----------S-SNYPVLLLGRV  129 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-----------c-cccHHHHHHHH
Confidence            45899999999999999999999999999999999999988777777777665521           1 33446666667


Q ss_pred             HHHHHHHhhhhH-HH-HHHHh----cCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC
Q 015348          311 LEVMFFFKILPF-SV-YIAQV----CPPGCEGSIMAFVMSA-VALAFIVSGYLGVALASYTGV  366 (408)
Q Consensus       311 ~~~~~~~~~~~~-~~-~~~~~----~p~~~~g~~~g~~~~~-~~lg~~ig~~~~g~l~~~~g~  366 (408)
                      ..|+........ -+ ++.|+    .|++..+..++..+.. +.+..+.++.++-.+.+..|.
T Consensus       130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~  192 (354)
T PF05631_consen  130 LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF  192 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC
Confidence            777776555444 22 34444    4556667777766633 445556666777777777664

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.41  E-value=1.5e-06  Score=82.47  Aligned_cols=121  Identities=11%  Similarity=-0.060  Sum_probs=81.7

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      +...++|- .....++.....++..+..++.|+++|.+|||..+..+.++..+..+..           +..++.-.++.
T Consensus        69 ~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~-----------atA~~~~~~ia  136 (599)
T PF06609_consen   69 YINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVC-----------ATAQNMNTFIA  136 (599)
T ss_pred             HHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHh-----------hcCCcHHHHHH
Confidence            34445663 4556778888888999999999999999999999988887777766552           22233335566


Q ss_pred             hHHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          308 SSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVAL  360 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l  360 (408)
                      ...+.+++.+........++|..|.+.|+...++.....-....+++.++..+
T Consensus       137 g~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~  189 (599)
T PF06609_consen  137 GMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF  189 (599)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence            66777777655544466689999999998776655443333333444444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.36  E-value=2.7e-06  Score=79.57  Aligned_cols=158  Identities=17%  Similarity=0.168  Sum_probs=111.8

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      ..++.+....+.+...+...++-+++.+..+.+.||++..+.+....+...+..++...           ..+...+++.
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~-----------~~s~~~~ial  140 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA-----------VHSFPGLIAL  140 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----------HhhhHHHHHH
Confidence            34667888889999999999999999999999999999666555544444443333221           1233356666


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHH-HHhhhh
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALII-QAVCTI  386 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~-~~~~~~  386 (408)
                      -++.|+.++...|. ..++.....+++||+.+|+..+..++|+.+|++++..+.+.-|...  ..++.+.+++ +++...
T Consensus       141 r~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~--~~gW~~~FiI~G~i~~~  218 (495)
T KOG2533|consen  141 RFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG--LAGWRWLFIIEGVITLV  218 (495)
T ss_pred             HHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC--cCCceeehhHHHHHHHH
Confidence            78888888888888 8888999999999999999999999999999999888766433211  1222333333 334444


Q ss_pred             hhhhhhhccCCCC
Q 015348          387 LPLYWSYFMPDGV  399 (408)
Q Consensus       387 ~~~~~~~~~~~~~  399 (408)
                      .+++.++.+|+..
T Consensus       219 ~gi~~f~~lp~~P  231 (495)
T KOG2533|consen  219 LGIVVFFFLPDNP  231 (495)
T ss_pred             HHheEEEEecCCh
Confidence            4555566666544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.34  E-value=2.8e-06  Score=81.70  Aligned_cols=120  Identities=9%  Similarity=0.100  Sum_probs=97.1

Q ss_pred             eccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHH
Q 015348          231 QNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSL  310 (408)
Q Consensus       231 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (408)
                      +..+.+.....+..++..++..+|.++.|.++||+|||+++..+.++..+..+...           ...++....+.-+
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a-----------~a~~~~~~~~~Rf  179 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTA-----------FAPNYWMFLIFRF  179 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHH-----------HhCcHHHHHHHHH
Confidence            34556777788889999999999999999999999999999999988888765532           2344556666677


Q ss_pred             HHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          311 LEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALAS  362 (408)
Q Consensus       311 ~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~  362 (408)
                      ..|++....... ..+..|..++++|+.+..+ ......++.+++..++++..
T Consensus       180 l~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~  231 (521)
T KOG0255|consen  180 LSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR  231 (521)
T ss_pred             HHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            777776655555 8899999999999999999 77778888888888888876

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.32  E-value=1.7e-05  Score=70.37  Aligned_cols=142  Identities=23%  Similarity=0.295  Sum_probs=106.7

Q ss_pred             hccCCCH--HHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 015348            9 DSLNVDP--STLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLL   85 (408)
Q Consensus         9 ~~l~~s~--~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (408)
                      ++++.+.  .+.++..+...+.... .++.|.++||     +|||+.+..+.....++.+...+...  .+.+.+++.|.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-----~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  102 (338)
T COG0477          30 STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-----YGRRKVLIIGLLLFLLGTLLLALAPN--VGLALLLILRL  102 (338)
T ss_pred             HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-----ccchHHHHHHHHHHHHHHHHHHhCcc--chHHHHHHHHH
Confidence            4444444  4778888887766666 6899999999     89998888887665555566666661  24888999999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHH-HHHHHHHHHHHHHHHHhhc--CChhhHHHHHHHHH
Q 015348           86 LSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWM-SSSMGGVLGNLLVGFAIDR--FSPPSMFLFFGLLV  162 (408)
Q Consensus        86 l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~g~~ig~~l~~~l~~~--~g~~~~f~i~~~~~  162 (408)
                      ..|++.+...+...+++.|..++ .  +     +|+...+.... ...+|.++++.+++.+...  .+||..|.......
T Consensus       103 ~~g~~~~~~~~~~~~~~~~~~~~-~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         103 LQGLGGGGLLPVASALLSEWFPE-A--T-----ERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCc-h--h-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            99999999999999999999886 1  1     38888888777 5788888888887777654  67998766665554


Q ss_pred             HHH
Q 015348          163 VLQ  165 (408)
Q Consensus       163 ~~~  165 (408)
                      ...
T Consensus       175 ~~~  177 (338)
T COG0477         175 LLL  177 (338)
T ss_pred             HHH
Confidence            433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.32  E-value=2.9e-06  Score=77.75  Aligned_cols=115  Identities=11%  Similarity=0.158  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhccC-----cchHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHH
Q 015348           51 PYIAIGAFLQAVSWLAIAILSQS-----SISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQS  125 (408)
Q Consensus        51 ~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~  125 (408)
                      +.+.++.++..++.+++.++...     ..+.+.++++..+.++|.|...+...++..|..+++++ +     +|.+..+
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~-~-----~~~~~F~   75 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD-S-----RRDSFFN   75 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT-T-----HHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch-h-----hhhhhHH
Confidence            46778888888888885444321     12356788889999999999999999999999998742 3     5888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhhh
Q 015348          126 FVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIA  171 (408)
Q Consensus       126 ~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  171 (408)
                      +++.+.++|..+++.+.+++-++.||...|.+.++..+++.+....
T Consensus        76 ~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   76 WFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999888877665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.29  E-value=1.5e-05  Score=73.39  Aligned_cols=151  Identities=10%  Similarity=0.108  Sum_probs=104.3

Q ss_pred             HHHHHHHHhhhcccccccce-eEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-ceehHHHHHHHHHHH
Q 015348          205 MYSVAWFAASYSIIPVLTGT-MFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSP-RKLISAIQAMMAVFM  282 (408)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~  282 (408)
                      +...+..++...-....... .+|...-+.+.+.+..|+..+...++..+.++..+....|.+. |+.+..+.+++.+..
T Consensus        37 ~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~  116 (488)
T KOG2325|consen   37 YLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGN  116 (488)
T ss_pred             HHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHH
Confidence            44444444433322223232 3333333477788999999999999999999999999998874 677777777777765


Q ss_pred             HHhHhhhcccccccCcCc-eEeehhhhHHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          283 ISDVLFVKGVYREMGVPD-SLYVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALA  361 (408)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~  361 (408)
                      ++-..+.       ..++ ..+.+...-++.|++.+.....-.++++..-.++|.++++..+....+|..+||.+...+.
T Consensus       117 llY~~l~-------~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~  189 (488)
T KOG2325|consen  117 LLYLALA-------YVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT  189 (488)
T ss_pred             HHHHHHH-------hcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence            5532211       1222 4446666777778777766667788888877888999999888888888888888776655


Q ss_pred             H
Q 015348          362 S  362 (408)
Q Consensus       362 ~  362 (408)
                      .
T Consensus       190 ~  190 (488)
T KOG2325|consen  190 P  190 (488)
T ss_pred             h
Confidence            3

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.28  E-value=5.5e-06  Score=79.42  Aligned_cols=112  Identities=14%  Similarity=0.159  Sum_probs=87.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHH
Q 015348          238 SVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFF  317 (408)
Q Consensus       238 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
                      .+.+++.+...++..++.++.|+++|++|||+.+..+.+...+..++...           ..++..+...-+..|++.+
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~-----------a~~~~~l~~GR~l~G~g~G  157 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL-----------APSWYQLIVGRILTGLGVG  157 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHhccchh
Confidence            35589999999999999999999999999999999888887777665332           2344466677777777765


Q ss_pred             hhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          318 KILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALA  361 (408)
Q Consensus       318 ~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~  361 (408)
                      ..... ..+.+|+.|++.||...+..+....+|..++ .+.+...
T Consensus       158 ~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~  201 (513)
T KOG0254|consen  158 GASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGT  201 (513)
T ss_pred             hhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhh
Confidence            55444 8899999999999999999999988888887 3333333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.27  E-value=1.7e-06  Score=79.06  Aligned_cols=144  Identities=15%  Similarity=0.193  Sum_probs=120.2

Q ss_pred             hccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 015348            9 DSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLS   87 (408)
Q Consensus         9 ~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (408)
                      +|++-.+.-.|........+-+. -++.+.+..|     .|+-+++.+++....+=.+..+..+    |+|..+..-+++
T Consensus       399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-----iGHv~v~~lgLa~~~~Rf~~~S~L~----n~W~vLPieilq  469 (618)
T KOG3762|consen  399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-----IGHVNVMYLGLACNVGRFLYYSYLQ----NPWMVLPIEILQ  469 (618)
T ss_pred             hhcCCcceeeeehhhhhccchHHHHHHHHHHHHH-----hcccceeeehhhHHHHHHHHHHHhc----CchheeeHHHHH
Confidence            67777777777554444455555 5678899999     9999999999999999999999999    999999999999


Q ss_pred             HHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHH-HHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHH
Q 015348           88 NLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWM-SSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQF  166 (408)
Q Consensus        88 g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~  166 (408)
                      |+..+..+.+.-+++....|++-         +..++++... ...+|--+|.++||.+.+.+|-|..|.+.++.+++.+
T Consensus       470 git~aliWaa~~sY~s~vaPp~l---------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l  540 (618)
T KOG3762|consen  470 GITHALIWAAIISYASHVAPPGL---------RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTL  540 (618)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCcc---------hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHH
Confidence            99999999999999999999864         6666776644 4567888999999999999999999999998888776


Q ss_pred             HHhh
Q 015348          167 FITI  170 (408)
Q Consensus       167 ~~~~  170 (408)
                      +...
T Consensus       541 ~~~~  544 (618)
T KOG3762|consen  541 ALFI  544 (618)
T ss_pred             HHHH
Confidence            5443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.24  E-value=1.3e-06  Score=79.56  Aligned_cols=147  Identities=14%  Similarity=0.011  Sum_probs=103.3

Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC-CCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHH
Q 015348          233 LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSV-SPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLL  311 (408)
Q Consensus       233 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                      +|+|+++..-+...+....-+...+.|+++||+ |+|+.+..+.++..+..+....        -+ ......+.+....
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~--------~~-~~~~~gl~i~L~~  126 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAI--------SS-VSGPGGLYIGLAL  126 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc--------cc-cccccHHHHHHHH
Confidence            568888877776666666677788889999994 8999999888888877655221        00 0122244555555


Q ss_pred             HHHHHHhhhhH-HHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHhhhhhh
Q 015348          312 EVMFFFKILPF-SVYIAQVCPPG--CEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILP  388 (408)
Q Consensus       312 ~~~~~~~~~~~-~~~~~~~~p~~--~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  388 (408)
                      ..++.+.+=|. ..++.|..|++  +|-..++++....|+|+.++|.+.+++.+..|+        ...+..+++...+.
T Consensus       127 I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~--------~~gF~~aavGm~~g  198 (498)
T COG3104         127 IIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGW--------HVGFGLAAVGMIIG  198 (498)
T ss_pred             HHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCH--------HHHHHHHHHHHHHH
Confidence            66666666566 77888887764  355677888888899999999999999998774        44556666666666


Q ss_pred             hhhhhccC
Q 015348          389 LYWSYFMP  396 (408)
Q Consensus       389 ~~~~~~~~  396 (408)
                      ++.+...+
T Consensus       199 l~~f~~~~  206 (498)
T COG3104         199 LVIFLLGR  206 (498)
T ss_pred             HHHHHHcc
Confidence            65555444

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.21  E-value=8.6e-06  Score=70.38  Aligned_cols=298  Identities=10%  Similarity=0.094  Sum_probs=165.7

Q ss_pred             eecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhh
Q 015348           37 VVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKA  116 (408)
Q Consensus        37 ~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~  116 (408)
                      .+.|.     .+-||+++.-.+.....+.+..+.+    +.+..=+.-+..|...+. ..+..+++-+..++++      
T Consensus        64 lLTD~-----lrYKPvivlq~ls~v~~w~~lv~g~----sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~------  127 (433)
T KOG3810|consen   64 LLTDY-----LRYKPVVVLQALSGVPVWIMLVFGP----SVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEM------  127 (433)
T ss_pred             HHhhh-----hhcceeeeeeccchhHHHHHHHhcC----CchheeeehhhcChHHHH-HHhhhheeeeecCHHH------
Confidence            57898     8899999888777777777777887    888777777777766554 3444577766666653      


Q ss_pred             ccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--CChhhHHHHHHHHHHHHHHHhhhccccccc------CCCC------
Q 015348          117 QSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR--FSPPSMFLFFGLLVVLQFFITIAVRESALK------LPKS------  182 (408)
Q Consensus       117 ~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~--~g~~~~f~i~~~~~~~~~~~~~~~~e~~~~------~~~~------  182 (408)
                         +-++.+......-.|...|..++..+++.  .++...=.+.-....++.+...++|.+++.      +++.      
T Consensus       128 ---Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e  204 (433)
T KOG3810|consen  128 ---YKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLE  204 (433)
T ss_pred             ---HHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccch
Confidence               66677777777778888888888777654  344444444444444555556666655421      0000      


Q ss_pred             --Ccchh--------HHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEec-cCCChhhHHHHHHHHHHHH
Q 015348          183 --QSNVG--------IRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQN-LKIRSSVLGISKVFGQAAM  251 (408)
Q Consensus       183 --~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~  251 (408)
                        ..+.+        ...-.+++....+||.++.-.+...+..+......+.....-.+. -+-.....|..-+...+.+
T Consensus       205 ~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLG  284 (433)
T KOG3810|consen  205 EMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLG  284 (433)
T ss_pred             hcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHH
Confidence              00001        111233455667889888877777774444333322111000010 1112233456666667777


Q ss_pred             HHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhc
Q 015348          252 LLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVC  330 (408)
Q Consensus       252 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  330 (408)
                      +++.+..|.+.-++.++.-+.++.....-+.++ ++        ..-....|+.....+..........++ ..-+++..
T Consensus       285 a~~~~~~g~l~i~w~r~g~~ll~~~s~~~agll-f~--------m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL  355 (433)
T KOG3810|consen  285 AIAALAAGYLNINWNRWGDLLLAVGSAVQAGLL-FI--------MAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNL  355 (433)
T ss_pred             HHHHHHHHheeeccchhhHHHHHHHHHHhhhhh-hh--------hhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhh
Confidence            788888888876666553333332211111111 11        112233444444444333322222333 55566777


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          331 PPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       331 p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      ..|.-|-++|+.+.+.-+   +-.++.-...|.-|
T Consensus       356 ~~e~~gLvFGiNTFvAl~---lQsilT~iVvd~~g  387 (433)
T KOG3810|consen  356 SSELFGLVFGINTFVALI---LQSILTLIVVDDRG  387 (433)
T ss_pred             hhhhheeeeehHHHHHHH---HHHhheEEEEcccc
Confidence            778888888887655433   33344444556444

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.20  E-value=0.0002  Score=68.49  Aligned_cols=160  Identities=16%  Similarity=0.104  Sum_probs=114.5

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcc-cccccchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhcc---------
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANL-PMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQ---------   72 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~-~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~---------   72 (408)
                      +..|+.++++.+..++.-......- .+....+++.++|-+    .||-+.+.++..+..++..+..+...         
T Consensus        60 lv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f----~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~  135 (571)
T KOG1237|consen   60 LVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSF----LGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC  135 (571)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence            4467888999988777766666663 444478899999994    69999999988888777655443221         


Q ss_pred             ---------Ccc---hHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHH
Q 015348           73 ---------SSI---SIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNL  140 (408)
Q Consensus        73 ---------~~~---~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~  140 (408)
                               ...   ....+....-+..+|.+...+...+.-+|-.++.++   +....+...+.+++...+.|..++..
T Consensus       136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~---~~~~~~~~fFnW~yf~~~~g~l~a~t  212 (571)
T KOG1237|consen  136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDP---VEVKGIPSFFNWFYFSQNGGALLAQT  212 (571)
T ss_pred             cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCc---chhhCcccchhHHHHHHHHHHHHHHH
Confidence                     000   123445555666667888788887888888874321   11114568899999999999999998


Q ss_pred             HHHHHhhcCChhhHHHHHHHHHHHHHHHh
Q 015348          141 LVGFAIDRFSPPSMFLFFGLLVVLQFFIT  169 (408)
Q Consensus       141 l~~~l~~~~g~~~~f~i~~~~~~~~~~~~  169 (408)
                      +-.+.-+..+|...|.+..+...++.++.
T Consensus       213 ~~vyiq~~~~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  213 VLVYIQDNVGWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             HHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence            88888888999999998888777765544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.20  E-value=1.4e-05  Score=69.76  Aligned_cols=145  Identities=14%  Similarity=0.171  Sum_probs=111.1

Q ss_pred             hccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 015348            9 DSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLS   87 (408)
Q Consensus         9 ~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (408)
                      .|-|+|+.+.|...+...+..+. ....-.+++|.    .++|+..+.....+.++.+.+.+.+..  +++   ...++.
T Consensus       236 i~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~----~n~r~~~~~~~~~~l~G~~G~~~~P~~--~~~---lw~~ll  306 (395)
T COG2807         236 IDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS----KNQRPLVVLALLLMLVGLVGLLLAPGQ--LPI---LWALLL  306 (395)
T ss_pred             HHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh----cccchHHHHHHHHHHHHHHHHHHhhhh--HHH---HHHHHH
Confidence            57899999999999988855444 66666778862    578888888888888888888777721  222   125889


Q ss_pred             HHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhhHHHHHHHHHHHHH
Q 015348           88 NLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS-PPSMFLFFGLLVVLQF  166 (408)
Q Consensus        88 g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g-~~~~f~i~~~~~~~~~  166 (408)
                      |+|.+...+.....+.+..++.+        +-++..+..+..+.+=..+||.+.|++.|..| |+..........++..
T Consensus       307 G~G~G~~F~laL~li~~rs~~a~--------~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~  378 (395)
T COG2807         307 GLGQGGAFPLALTLILLRSSDAA--------IAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML  378 (395)
T ss_pred             hCccchHHHHHHHHHHhhcCChH--------HHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence            99999999988899988887765        57777787777888888889999999998765 8888877766666655


Q ss_pred             HHhh
Q 015348          167 FITI  170 (408)
Q Consensus       167 ~~~~  170 (408)
                      +.-+
T Consensus       379 i~Gl  382 (395)
T COG2807         379 IFGL  382 (395)
T ss_pred             HHHh
Confidence            5443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.13  E-value=4.6e-06  Score=72.79  Aligned_cols=125  Identities=11%  Similarity=0.074  Sum_probs=90.3

Q ss_pred             chheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCcc
Q 015348           33 PLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTS  112 (408)
Q Consensus        33 ~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~  112 (408)
                      ++.+++.||     .|||+.|..+.+++++..++.......+....++..+|++    ..........+.+|..|..   
T Consensus       399 LIt~~iver-----lGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPTa---  466 (528)
T KOG0253|consen  399 LITGVIVER-----LGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPTA---  466 (528)
T ss_pred             hHHHHHHHH-----hcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccchh---
Confidence            578999999     9999999999999999988877766222222333344433    3333444458889999976   


Q ss_pred             chhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhhhcccccc
Q 015348          113 SKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITIAVRESAL  177 (408)
Q Consensus       113 ~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~e~~~  177 (408)
                            .|+...+....+.-+|.++.|.++  +....+-..+..+.+.+++++.+...++|-+++
T Consensus       467 ------vRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  467 ------VRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             ------hhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence                  488888888889999999999998  333344455666777778888887777775443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.08  E-value=3.3e-05  Score=65.46  Aligned_cols=129  Identities=12%  Similarity=0.000  Sum_probs=83.3

Q ss_pred             EEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehh
Q 015348          227 FYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLI  306 (408)
Q Consensus       227 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (408)
                      +-.++.+|+|.++...+.....++..+| +..|.+.|++|++..+.++.....+.+......+...   .. ....+.+.
T Consensus        26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~---i~-~~~~~~~~  100 (250)
T PF06813_consen   26 PQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR---IP-SLPVWLMC  100 (250)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc---cC-ccchHHHH
Confidence            3456668999999999999999998764 8889999999999998888887777765543322111   11 11222232


Q ss_pred             hhHHHHHHHHHhh-hhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          307 FSSLLEVMFFFKI-LPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALA  361 (408)
Q Consensus       307 ~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~  361 (408)
                      ......+.+.... ........+..| ++||++.|+.-+...+++.+-..+...+.
T Consensus       101 ~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  101 LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            2222222222211 122344457787 57999999999999888776655544433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.07  E-value=7.4e-06  Score=73.64  Aligned_cols=160  Identities=15%  Similarity=0.201  Sum_probs=105.2

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcC-ceEeehhhhHHHHH
Q 015348          235 IRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP-DSLYVLIFSSLLEV  313 (408)
Q Consensus       235 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  313 (408)
                      +++...+.+.....++.+.|+++.|++.||+|||++.-..++++.++.++..+ ...    ...+ ....++...-...|
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~-s~~----~~~~~~~m~~L~~~R~~LG  155 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGL-SVG----TTSPLGVMMTLCFFRFLLG  155 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhcc-CCC----CCCCcchhhHHHHHHHHhh
Confidence            66777888999999999999999999999999999988887777776543111 111    1111 12224444556667


Q ss_pred             HHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCC--CCCCCchH-HHHHHHHhhh
Q 015348          314 MFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYT----GVT--GDDFSGLP-LALIIQAVCT  385 (408)
Q Consensus       314 ~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~----g~~--~~~~~~~~-~~~~~~~~~~  385 (408)
                      ++.++-.|+ .+..+|...++.||+..+..-+++..|...|..++-.+...+    +..  .......| +.+.+.++-.
T Consensus       156 iGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa  235 (538)
T KOG0252|consen  156 IGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPA  235 (538)
T ss_pred             ccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            777788899 788899999999999999888888888777776665554433    221  11122333 3344444444


Q ss_pred             hhhhhhhhccCCCC
Q 015348          386 ILPLYWSYFMPDGV  399 (408)
Q Consensus       386 ~~~~~~~~~~~~~~  399 (408)
                      +..+..-...||++
T Consensus       236 ~~~ly~Rl~M~Et~  249 (538)
T KOG0252|consen  236 LLVLYFRLKMPETA  249 (538)
T ss_pred             HHHHHhhhcCCcch
Confidence            44443444556644

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.02  E-value=1.2e-07  Score=89.61  Aligned_cols=114  Identities=12%  Similarity=0.158  Sum_probs=88.2

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCc---eEeehhhhHHHH
Q 015348          236 RSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPD---SLYVLIFSSLLE  312 (408)
Q Consensus       236 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  312 (408)
                      +....++..+...++.++|.++.|.+.||+|||+.+..+..+..+..++..           ..+   +.+.+...-+..
T Consensus        44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~-----------~~~~~~~~~~~~~~R~~~  112 (451)
T PF00083_consen   44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIA-----------FAPSYNNFWMLLIGRFLI  112 (451)
T ss_pred             hHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccc-----------cccccccccccccccccc
Confidence            345677888999999999999999999999999999888777766655422           223   445666666777


Q ss_pred             HHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          313 VMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVAL  360 (408)
Q Consensus       313 ~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l  360 (408)
                      |++.+...+. ..++.|.+|+++|+...++.+....+|..++..++-.+
T Consensus       113 G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~  161 (451)
T PF00083_consen  113 GFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV  161 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7776666666 88999999999999999998888888877776654433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.93  E-value=0.00034  Score=62.77  Aligned_cols=149  Identities=15%  Similarity=0.127  Sum_probs=116.4

Q ss_pred             hccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 015348            9 DSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLS   87 (408)
Q Consensus         9 ~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (408)
                      +.||+|+.|...+......+.++ -...|++..|    +.++|+.-.+++....++..+..++... .+.+.+....++.
T Consensus       237 ~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~----~~~~~~~a~~G~~~~~~~f~lii~a~~~-~~~~~~~~~~~l~  311 (403)
T PF03209_consen  237 EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR----RLGKKRTAALGCLLGALAFALIILAGPL-GSPWLFRPGVFLL  311 (403)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHH
Confidence            45899999999998888877666 4466777664    3778888888888888777765554422 2688889999999


Q ss_pred             HHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc----------CChhhHHHH
Q 015348           88 NLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR----------FSPPSMFLF  157 (408)
Q Consensus        88 g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~----------~g~~~~f~i  157 (408)
                      |++.|......-+.+.+..++++         .|..++.+.....++..+|..++|.+.|.          .+|..+|.+
T Consensus       312 G~g~G~f~vgals~mM~lt~~~~---------aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~l  382 (403)
T PF03209_consen  312 GLGNGLFTVGALSLMMDLTSAGR---------AGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFAL  382 (403)
T ss_pred             HHhhhHHHHHHHHHHHhCCCCcc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHH
Confidence            99999999999899999988764         88999999999999999999999887653          347777888


Q ss_pred             HHHHHHHHHHHhhh
Q 015348          158 FGLLVVLQFFITIA  171 (408)
Q Consensus       158 ~~~~~~~~~~~~~~  171 (408)
                      .++..++++.+...
T Consensus       383 Ea~ll~~a~~ll~~  396 (403)
T PF03209_consen  383 EAVLLLAALVLLGR  396 (403)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777666555433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.84  E-value=0.0016  Score=61.19  Aligned_cols=250  Identities=10%  Similarity=0.073  Sum_probs=129.9

Q ss_pred             CHHHHHHHHHhhcccccc--cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHh--cc------C----------
Q 015348           14 DPSTLQLLQNSANLPMVG--KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAIL--SQ------S----------   73 (408)
Q Consensus        14 s~~~~g~~~~~~~~~~~~--~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~--~~------~----------   73 (408)
                      .++.+..+=....+|..+  ..+...++||     ++|.+++-+....+.....+.++.  |.      +          
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~-----~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~  130 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNR-----LSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAIL  130 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhc
Confidence            445555555544444333  6678899999     999988766655555544444432  11      0          


Q ss_pred             ---------cchHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHH
Q 015348           74 ---------SISIFTMSLFLLLSNLGASIAE-VANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVG  143 (408)
Q Consensus        74 ---------~~~~~~~~~~~~l~g~~~~~~~-~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~  143 (408)
                               -.+.|.+.+..+..-+-..... ....++..|..+.+|         -.|..+.+..+.++|.+++..+..
T Consensus       131 ~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e---------AKRfYpl~g~ganigli~sG~~~~  201 (491)
T PF03219_consen  131 PPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE---------AKRFYPLFGLGANIGLIFSGQLTS  201 (491)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     0123334444444444333332 244577788887654         777899999999999999888887


Q ss_pred             HHhh---------cCChhhHHHHH----HHHHHHHHHHhhhcc----ccccc------CCCCCcchhHHHHHHHHHHhcc
Q 015348          144 FAID---------RFSPPSMFLFF----GLLVVLQFFITIAVR----ESALK------LPKSQSNVGIRAQLSELSAALR  200 (408)
Q Consensus       144 ~l~~---------~~g~~~~f~i~----~~~~~~~~~~~~~~~----e~~~~------~~~~~~~~~~~~~~~~~~~~~~  200 (408)
                      .+.+         ...|...+...    .+.+.+.......+.    +++..      +++++++.+.++..+.   .+|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~---l~k  278 (491)
T PF03219_consen  202 YFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAKKKKKKKPKMSLKESFKL---LLK  278 (491)
T ss_pred             HHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhhcccccCCCccHHHHHHH---HHh
Confidence            7776         12354333221    122222222222222    11111      1111122233444443   377


Q ss_pred             cchhHHHHHHHHhhhcccccccceeEEEEEeccCCChh----hHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHH
Q 015348          201 KPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSS----VLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQA  276 (408)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  276 (408)
                      +|.+..+.+...............+-....+.+. |+.    ..|-.....++..++..++.+++.+|+|.+....+.-+
T Consensus       279 S~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPi  357 (491)
T PF03219_consen  279 SKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPI  357 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHH
Confidence            8877766665544222222111111100111111 111    23444555566677777888999999998877666544


Q ss_pred             HHHHH
Q 015348          277 MMAVF  281 (408)
Q Consensus       277 ~~~~~  281 (408)
                      +..+.
T Consensus       358 v~lit  362 (491)
T PF03219_consen  358 VILIT  362 (491)
T ss_pred             HHHHH
Confidence            44443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.82  E-value=0.00021  Score=59.84  Aligned_cols=233  Identities=11%  Similarity=0.105  Sum_probs=103.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHH-----hhcCChhhHHHHHHHHHHHHHHHhhhcccc--cccCC-CCCcchhHHH
Q 015348          119 SSGELQSFVWMSSSMGGVLGNLLVGFA-----IDRFSPPSMFLFFGLLVVLQFFITIAVRES--ALKLP-KSQSNVGIRA  190 (408)
Q Consensus       119 ~~g~~~~~~~~~~~~g~~ig~~l~~~l-----~~~~g~~~~f~i~~~~~~~~~~~~~~~~e~--~~~~~-~~~~~~~~~~  190 (408)
                      +|+........+.++|.++....--.-     ...-+|++.+.+.+++.++-++....+-++  ...+. ++++++...+
T Consensus         3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k~~~~~~   82 (267)
T PF07672_consen    3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEKENSTLS   82 (267)
T ss_pred             ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccccccccccc
Confidence            466666655667788877764431111     112459999988887776665554433221  11111 1111111111


Q ss_pred             HHHHHHHhcccchhHHHHHHHHhhhccccccc---ceeEEEEEec--cCC----Chh----hHHHHHHHHHHHHHHHHHH
Q 015348          191 QLSELSAALRKPEIMYSVAWFAASYSIIPVLT---GTMFFYQTQN--LKI----RSS----VLGISKVFGQAAMLLWGVI  257 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~g~----~~~----~~g~~~~~~~~~~~~~~~~  257 (408)
                      ......+.+|+|..|...+..-. +.......   .....+ ...  .+.    +..    .......+...+..+|.+.
T Consensus        83 ~~~s~~~~LK~K~tw~w~~~Yg~-wLv~~V~p~t~~~~~~~-~~~s~~ni~~~~~~~~~~~~~~~~~I~fv~g~~~G~~~  160 (267)
T PF07672_consen   83 KKPSYKSILKEKETWKWILIYGI-WLVVVVFPFTPSWFNIL-IWISPANIKSVVSGGGFNWIIPIFQILFVAGYFLGPFT  160 (267)
T ss_pred             ccchHHHHHccchHHHHHHHHHH-HheeEEEeccchhHhHh-hhcCcccccccccccccchhhHHHHHHHHHHHhhhcee
Confidence            22445566999998887665544 22111111   111000 000  111    011    1123344444555566666


Q ss_pred             HHHhhccCCCceehHHHHHHHHHHH-HHhHhhhcccccccCcCce--EeehhhhHHHHHHHHHhhhhH-HHHHHHh--cC
Q 015348          258 YNSGLKSVSPRKLISAIQAMMAVFM-ISDVLFVKGVYREMGVPDS--LYVLIFSSLLEVMFFFKILPF-SVYIAQV--CP  331 (408)
Q Consensus       258 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~p  331 (408)
                      .|++.+..-+||......+...+.. .+.......    .+..+.  .....+..++.|...-+..+. ..+-.|.  ..
T Consensus       161 ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~----~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL~lPhEyK~~~  236 (267)
T PF07672_consen  161 IGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYF----VGPGNAAGFAFFYIFGFLAGFFLWGIQGVILNLPHEYKGYN  236 (267)
T ss_pred             eccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----hCcchHHHHHHHHHHHHHHHHHHHhhhHHHhcChhhhcCCC
Confidence            6776654444444444333322221 111111100    111111  112223333334433333344 3333333  45


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHH
Q 015348          332 PGCEGSIMAFVMSAVALAFIVSGYLG  357 (408)
Q Consensus       332 ~~~~g~~~g~~~~~~~lg~~ig~~~~  357 (408)
                      |++.|..+|+.-.++.+.-.+.-++.
T Consensus       237 pk~ig~~Fg~iWGfGY~~yTi~~Ii~  262 (267)
T PF07672_consen  237 PKKIGIQFGLIWGFGYIFYTIYDIIL  262 (267)
T ss_pred             cceehhHHHHHHHHHHHHHHHHHHHH
Confidence            56778888887766666555544443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.59  E-value=3.7e-05  Score=52.16  Aligned_cols=50  Identities=26%  Similarity=0.479  Sum_probs=40.3

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAF   58 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~   58 (408)
                      ++.|++ +.|+|+.|+|.+.++..+..++ +|++|.++||     ++|++.++....
T Consensus        23 l~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-----~~~~~~~l~~~~   73 (77)
T PF12832_consen   23 LPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-----FGKRKVILLGSL   73 (77)
T ss_pred             hhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCccHHHHHHHH
Confidence            456774 6999999999999998866666 9999999999     777776665543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.58  E-value=0.00065  Score=63.37  Aligned_cols=134  Identities=13%  Similarity=0.192  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhHHHH
Q 015348          246 FGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPFSVY  325 (408)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (408)
                      ..++..++.+...|.++||+|||..+........+......+            ..+|..+. .-..+.....+....++
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~------------~~~~~~~~-~~l~g~~~~~~s~~~a~  136 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF------------QGYWFFLL-LGLSGGFSAIFSVGFAY  136 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH------------HHHHHhhh-cccccchhhhhhhhhhh
Confidence            457788888999999999999998887776655554333222            11111111 11112222233344778


Q ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHhhhhhhhhh-hhccCCCCC
Q 015348          326 IAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTILPLYW-SYFMPDGVK  400 (408)
Q Consensus       326 ~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  400 (408)
                      +++...++.|...+|+.+.....+..++|.+++.+.+..|.        ...+.+.....++.... ...+||+..
T Consensus       137 vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~--------a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  137 VADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGI--------ALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             eeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCc--------hHHHHHHHHHHHHHHHHHhhccccccC
Confidence            99999999999999999999999999999999999998664        23334444444433333 345566543

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.40  E-value=0.00025  Score=48.12  Aligned_cols=61  Identities=16%  Similarity=0.168  Sum_probs=48.2

Q ss_pred             hcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHH
Q 015348          215 YSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQA  276 (408)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  276 (408)
                      +..........+.|.. +.|+|+.+.|++.++..+..+++.+++|.++||.++++.......
T Consensus        13 f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen   13 FAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            3344444455555555 489999999999999999999999999999999998887765543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.40  E-value=0.0011  Score=51.82  Aligned_cols=95  Identities=14%  Similarity=0.155  Sum_probs=76.6

Q ss_pred             cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCc
Q 015348           32 KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMT  111 (408)
Q Consensus        32 ~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~  111 (408)
                      .++.+.+.++     .|.|+.++++.+...+-... .+.+    +.+.++..-.+.|++.+..+++...++.+..++++ 
T Consensus        54 ~l~~P~iv~~-----lg~K~sm~lg~~~y~~y~~~-~~~~----~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~-  122 (156)
T PF05978_consen   54 CLFAPSIVNK-----LGPKWSMILGSLGYAIYIAS-FFYP----NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET-  122 (156)
T ss_pred             HHhHHHHHHH-----HhhHHHHHHHHHHHHHHHHH-HHhh----hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH-
Confidence            5566678899     99999999998887754443 3455    78888999999999999999999899988877653 


Q ss_pred             cchhhccCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 015348          112 SSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFA  145 (408)
Q Consensus       112 ~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l  145 (408)
                              +++..++.....+.+.++|.++.-.+
T Consensus       123 --------~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  123 --------IGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             --------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    78888888888888888887765544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.35  E-value=0.0016  Score=59.04  Aligned_cols=126  Identities=13%  Similarity=-0.021  Sum_probs=81.6

Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEe--ehhhhHH
Q 015348          233 LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLY--VLIFSSL  310 (408)
Q Consensus       233 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  310 (408)
                      +| +....-+...++.+..+...+..-|+.||+|.|.....+.....+....-..-..     -..++..+  .......
T Consensus        75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~-----p~v~~~f~~~l~~~Gq~  148 (480)
T KOG2563|consen   75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL-----PFVPPLFRRPLTHTGQS  148 (480)
T ss_pred             hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC-----ccccccchhhhhHHhHH
Confidence            55 5556668888999999999999999999999999998888877776554322000     01112221  2222233


Q ss_pred             HHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015348          311 LEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYT  364 (408)
Q Consensus       311 ~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~  364 (408)
                      ..+..+...+.. .=+..--.|+++|+++..+-...+.+|..+|.++...+..+-
T Consensus       149 iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  149 IAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             HHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            333333322222 122334589999999988888888888888888877776554

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.34  E-value=2.7e-05  Score=74.26  Aligned_cols=169  Identities=14%  Similarity=0.087  Sum_probs=2.4

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHh---hhcccc--c-c------
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVL---FVKGVY--R-E------  295 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~-~------  295 (408)
                      -..+.++++..+.|++.+.+-++.++..++..++.+|.+|-|.+..+.+++++..++..+   +.....  . .      
T Consensus        28 tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~  107 (539)
T PF03137_consen   28 TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNS  107 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccc
Confidence            355668999999999999999999999999999999887778888887777776443221   111100  0 0      


Q ss_pred             -----c----------------------CcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHH
Q 015348          296 -----M----------------------GVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVA  347 (408)
Q Consensus       296 -----~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~  347 (408)
                           .                      .....++++++..++.|++.....+. .+++-|.++++..+.+.|+..++..
T Consensus       108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~  187 (539)
T PF03137_consen  108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSI  187 (539)
T ss_dssp             --------------------------------------------SSS---------------------------------
T ss_pred             ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhh
Confidence                 0                      00012345556677778888777888 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc-CC----------C--CCCC-CchHHHHHHHHhhhhhhhhhhhccC
Q 015348          348 LAFIVSGYLGVALASYT-GV----------T--GDDF-SGLPLALIIQAVCTILPLYWSYFMP  396 (408)
Q Consensus       348 lg~~ig~~~~g~l~~~~-g~----------~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  396 (408)
                      +|-.+|-.+++...+.. ..          +  ...| +.+|+.+++++.+.++..+.+...|
T Consensus       188 lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP  250 (539)
T PF03137_consen  188 LGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP  250 (539)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             ccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999988888776542 11          1  1223 3456666666665555444444444

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=97.26  E-value=0.0096  Score=52.59  Aligned_cols=153  Identities=18%  Similarity=0.153  Sum_probs=84.2

Q ss_pred             chhhhhhhccCCCHHHHHHHHHhhc-ccccccchheeecccccccCCcchhHHHHHHHHHHHHHHHH------HHhcc--
Q 015348            2 AVNFFLKDSLNVDPSTLQLLQNSAN-LPMVGKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAI------AILSQ--   72 (408)
Q Consensus         2 ~~~~~l~~~l~~s~~~~g~~~~~~~-~~~~~~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~------~~~~~--   72 (408)
                      +++.|+.+-.|-|-...+....+-. ...++.|+.|-..|+     ..|+|++.....+.=++....      .+...  
T Consensus        49 ~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg-----~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~  123 (503)
T KOG2601|consen   49 SVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDG-----MSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDL  123 (503)
T ss_pred             HHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcc-----hhHHHHHHHHHhhccHHHHHHHHHHhhheeecch
Confidence            5666774434423333332222223 334558999999999     999998877655433322222      22221  


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHhhHHHH--H--Hhhc----cCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHH
Q 015348           73 SSISIFTMSLFLLLSNLGASIAEVANDAL--V--AEMA----KQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGF  144 (408)
Q Consensus        73 ~~~~~~~~~~~~~l~g~~~~~~~~~~~a~--i--~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~  144 (408)
                      ...+..++..+.++.....+.......+-  +  .||.    ..++. +     ...+.++.....-....++.|...|.
T Consensus       124 ~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~-s-----~lt~mnatir~iDq~tn~Lapv~tg~  197 (503)
T KOG2601|consen  124 KSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESP-S-----VLTNMNATIRGIDQSTNLLAPVITGL  197 (503)
T ss_pred             hcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCH-H-----HHhhcchhhhhhhhhhhchhhhhhcc
Confidence            11244455666666555544443332221  1  1111    22221 1     24445566666777888999999999


Q ss_pred             HhhcCChhhHHHHHHHHHHHH
Q 015348          145 AIDRFSPPSMFLFFGLLVVLQ  165 (408)
Q Consensus       145 l~~~~g~~~~f~i~~~~~~~~  165 (408)
                      +.+..+.|..-...++..++.
T Consensus       198 Iitfvsl~~~~g~f~~w~~vs  218 (503)
T KOG2601|consen  198 IITFVSLRASAGTFAAWALVS  218 (503)
T ss_pred             cceeechhhhhhhhHHHHHHH
Confidence            998888887665555555553

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.25  E-value=0.024  Score=53.08  Aligned_cols=128  Identities=12%  Similarity=0.114  Sum_probs=78.8

Q ss_pred             ChhhHHHHHHHHHHHHHHH-HHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhccccccc-----------CcCc---
Q 015348          236 RSSVLGISKVFGQAAMLLW-GVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREM-----------GVPD---  300 (408)
Q Consensus       236 ~~~~~g~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---  300 (408)
                      +.+...++-....+.+.+. .++.+++++|+++++.+............+............           ..+.   
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            4467777776665655555 888999999999998887665555544333222111111000           0000   


Q ss_pred             ------eEeehhhhHHHHHHHHHhhhh-H-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          301 ------SLYVLIFSSLLEVMFFFKILP-F-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       301 ------~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                            ..|......+..-+....... . +++++|.+.+++..|.+++.....++|..+++.+..++.+.
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~  191 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL  191 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  011111111122222222233 4 88999999999999999999999999999999888888753

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.20  E-value=0.00059  Score=46.74  Aligned_cols=63  Identities=14%  Similarity=0.088  Sum_probs=57.2

Q ss_pred             hhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhc
Q 015348            4 NFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILS   71 (408)
Q Consensus         4 ~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~   71 (408)
                      -..+++|.++|.++.|++.+...++|.+ .+....+.++     .++++.+..+.+...+..+.+++.+
T Consensus        15 LP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen   15 LPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-----SRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567899999999999999999999999 7888888888     8888999999999999999999888

Note that many members are hypothetical proteins.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.19  E-value=0.11  Score=48.08  Aligned_cols=258  Identities=13%  Similarity=0.119  Sum_probs=137.2

Q ss_pred             hhhccCC---CHHHHHHHHHhhcccccc--cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC--------
Q 015348            7 LKDSLNV---DPSTLQLLQNSANLPMVG--KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS--------   73 (408)
Q Consensus         7 l~~~l~~---s~~~~g~~~~~~~~~~~~--~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~--------   73 (408)
                      ++|.+.+   .++.+.++-+..-+|..+  .++.+.+.++     ..|.+++-.-...+....+++++.-.+        
T Consensus        49 lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-----lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~  123 (509)
T COG3202          49 LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-----LTREKVFYIILGFFLGFFALFAFVIYPYKDILHPD  123 (509)
T ss_pred             hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence            3444443   456667766666665433  7889999999     889888777766666666666643320        


Q ss_pred             -----------c---------chHHHHHHHHHHHHHHHHHHHh-hHHHHHHhhccCCCccchhhccCcchhHHHHHHHHH
Q 015348           74 -----------S---------ISIFTMSLFLLLSNLGASIAEV-ANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSS  132 (408)
Q Consensus        74 -----------~---------~~~~~~~~~~~l~g~~~~~~~~-~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  132 (408)
                                 .         .+.|.......+.-+-.+.... .......|..+.+|         -.|..+.++...+
T Consensus       124 ~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~e---------akRFy~lf~l~~n  194 (509)
T COG3202         124 PEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEE---------AKRFYPLFGLGAN  194 (509)
T ss_pred             HHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---------hhhhHHHHHHHHH
Confidence                       0         1225555555555554444433 45577788877654         7788999999999


Q ss_pred             HHHHHHHHHHHHHhhcC-C---------hhhHHHHHHHHHHHHHHHhhhc----ccccc---cCCCCCc----chhHHHH
Q 015348          133 MGGVLGNLLVGFAIDRF-S---------PPSMFLFFGLLVVLQFFITIAV----RESAL---KLPKSQS----NVGIRAQ  191 (408)
Q Consensus       133 ~g~~ig~~l~~~l~~~~-g---------~~~~f~i~~~~~~~~~~~~~~~----~e~~~---~~~~~~~----~~~~~~~  191 (408)
                      ++..++..+..++.++. .         .+..+.+.+....+......++    .+++.   +..++++    +.+..+.
T Consensus       195 i~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~~k~k~~~~~s  274 (509)
T COG3202         195 ISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKLKLGLIES  274 (509)
T ss_pred             HHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcccccccccCcHHHH
Confidence            99888888877776531 1         2333444444334443333332    22222   1111111    1223333


Q ss_pred             HHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCC---hhhHHHHHHHHHHH-HHHHHHHHHHhhccCCC
Q 015348          192 LSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIR---SSVLGISKVFGQAA-MLLWGVIYNSGLKSVSP  267 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~g~~~~~~~~~-~~~~~~~~~~l~~~~~~  267 (408)
                      .+.   ..+.|.++...+...+.+.........+-.-.++.....   ....|......++. .++.....+.+.+|.|.
T Consensus       275 ~k~---i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW  351 (509)
T COG3202         275 FKM---ILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGW  351 (509)
T ss_pred             HHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhH
Confidence            333   367777666665555433322222111100000001111   12233334444444 55666778889999887


Q ss_pred             ceehHHHHHHHHHH
Q 015348          268 RKLISAIQAMMAVF  281 (408)
Q Consensus       268 ~~~~~~~~~~~~~~  281 (408)
                      ...-.+.-++..+.
T Consensus       352 ~~~AlitPiv~lit  365 (509)
T COG3202         352 FTGALITPLVMLIT  365 (509)
T ss_pred             HHHHHHHHHHHHHH
Confidence            65554444444443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.16  E-value=0.00032  Score=59.89  Aligned_cols=126  Identities=17%  Similarity=0.166  Sum_probs=78.1

Q ss_pred             ccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 015348           27 LPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEM  105 (408)
Q Consensus        27 ~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~  105 (408)
                      +|.+. +...-...||+|   ++.|..+  ...+.+.++++.+++.    +.+.-+....+..++.|+.....-++-+.+
T Consensus        73 lPsL~iKl~~Pff~~rfp---f~~Ri~~--~v~~sa~s~~lVafs~----s~~~sL~GV~~aSissGlGEiTFL~lss~Y  143 (409)
T KOG3880|consen   73 LPSLAIKLTAPFFIHRFP---FGFRIAL--VVLLSALSFFLVAFSN----SVPMSLLGVVFASISSGLGEITFLALSSRY  143 (409)
T ss_pred             hHHHHHHHhchhhhhhcc---cchHHHH--HHHHHhcceEEEEecc----chhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence            55554 667777888965   7777544  3456677777777887    899989999999999988877554443322


Q ss_pred             ccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHHhhh-cccc
Q 015348          106 AKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAID--RFSPPSMFLFFGLLVVLQFFITIA-VRES  175 (408)
Q Consensus       106 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~--~~g~~~~f~i~~~~~~~~~~~~~~-~~e~  175 (408)
                       ++..             .+.+..+...++++|..--..+.+  ..+.|...++...+.++.....++ ++++
T Consensus       144 -~~~~-------------i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p  202 (409)
T KOG3880|consen  144 -PSIV-------------IAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP  202 (409)
T ss_pred             -CCce-------------eccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence             2211             222222333444555544444444  356788888888777766655554 5544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.15  E-value=0.0076  Score=47.16  Aligned_cols=105  Identities=10%  Similarity=0.031  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-
Q 015348          244 KVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-  322 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  322 (408)
                      ..+......+..++.+.+.++.|.|+.+.++.+...+.....+.            ...+.+.......|++....... 
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------------~~~~~l~~~s~l~G~~~a~lW~aq  110 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------------PNSYTLYPASALLGFGAALLWTAQ  110 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHhhhhHHhhHhh
Confidence            34444455566677788888999999998888777655443221            12235566667777776655555 


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          323 SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVAL  360 (408)
Q Consensus       323 ~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l  360 (408)
                      ..++.+..+++.+++..|+...+.+.+..+|+...-.+
T Consensus       111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77889999999999999999999998888887665444

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.85  E-value=0.011  Score=57.93  Aligned_cols=157  Identities=16%  Similarity=0.026  Sum_probs=87.7

Q ss_pred             eccCCChhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhH
Q 015348          231 QNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKS-VSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSS  309 (408)
Q Consensus       231 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
                      +.+|++......+........-+...+.+.+.|+ +|+++.+..+.++..+...+...  ........ +..........
T Consensus        16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai--~a~~~~~~-~~~~~~~l~gL   92 (654)
T TIGR00926        16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF--GAIPSSGH-PLHDLLDLLGL   92 (654)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--ccCccccc-chHHHHHHHHH
Confidence            3467777766655555555555556666777775 68888887777776665443221  00000000 00001122233


Q ss_pred             HHHHHHHHhhhhH-HHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHhhh
Q 015348          310 LLEVMFFFKILPF-SVYIAQVCPPG---CEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCT  385 (408)
Q Consensus       310 ~~~~~~~~~~~~~-~~~~~~~~p~~---~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  385 (408)
                      .+...|.+..-|. .+...+..+++   .+-+.+.++....|+|+.+++.+.+++.+..+-.. .+..++..+.+++++.
T Consensus        93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg-~~~~~~~aF~i~~i~m  171 (654)
T TIGR00926        93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG-CQDCYPLAFGVPAILM  171 (654)
T ss_pred             HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cCcchHHHHHHHHHHH
Confidence            3344455555566 67777777653   36677888888899999999999998876542110 1122344555555554


Q ss_pred             hhhhhh
Q 015348          386 ILPLYW  391 (408)
Q Consensus       386 ~~~~~~  391 (408)
                      +++++.
T Consensus       172 ~ia~lv  177 (654)
T TIGR00926       172 ILALIV  177 (654)
T ss_pred             HHHHHH
Confidence            444433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.72  E-value=0.0023  Score=62.06  Aligned_cols=173  Identities=14%  Similarity=0.062  Sum_probs=122.4

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhh---hcccc-----------
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLF---VKGVY-----------  293 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------  293 (408)
                      ...+.++++.++.|++...+-++..+...+..++..|..+-+.+-++.+++++..++..+-   .....           
T Consensus       122 tiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~  201 (735)
T KOG3626|consen  122 TIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVE  201 (735)
T ss_pred             hhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcccc
Confidence            3455689999999999988999999999999999999888888888888877764443221   10000           


Q ss_pred             cc--------------c------C-----cCc--eEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHH
Q 015348          294 RE--------------M------G-----VPD--SLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSA  345 (408)
Q Consensus       294 ~~--------------~------~-----~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~  345 (408)
                      ..              .      .     -.+  .+..++...++.|+|.....|. .+++-|.+.+++...+.|+..++
T Consensus       202 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~  281 (735)
T KOG3626|consen  202 NPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSM  281 (735)
T ss_pred             CCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHH
Confidence            00              0      0     000  1223445566777777777777 88999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcC-C-------C--CCCC-CchHHHHHHHHhhhhhhhhhhhccCCCCC
Q 015348          346 VALAFIVSGYLGVALASYTG-V-------T--GDDF-SGLPLALIIQAVCTILPLYWSYFMPDGVK  400 (408)
Q Consensus       346 ~~lg~~ig~~~~g~l~~~~g-~-------~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (408)
                      ..+|=++|-++++.+.+..- .       +  ...| +.+|+.+++++.+.+++.+.++..|++.+
T Consensus       282 ~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  282 AILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             HHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence            99999999888888876431 1       1  1223 34567788888888877777777776544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.66  E-value=0.017  Score=54.15  Aligned_cols=135  Identities=14%  Similarity=0.135  Sum_probs=77.9

Q ss_pred             EEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCC----Ccee-hHHHHHHHHHHHHHhHhhhcccccccCcCc
Q 015348          226 FFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVS----PRKL-ISAIQAMMAVFMISDVLFVKGVYREMGVPD  300 (408)
Q Consensus       226 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (408)
                      .+|+++++|.++.+.........+.-. ..++.|.++|-+.    |||. +.++.++..+....... ...      ...
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~-~~~------~~~   84 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL-LPA------SES   84 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh-ccc------ccc
Confidence            345677899999998877766655443 3567889999863    4444 34444443322222111 010      001


Q ss_pred             eEeehhhhHHHHHHHHHhh-hhHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015348          301 SLYVLIFSSLLEVMFFFKI-LPFSVYIAQVCPP--GCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTG  368 (408)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~--~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~  368 (408)
                      .........+...++.... ....++..|...+  +.+|...+.......+|+.++..++|.+.+..+...
T Consensus        85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~  155 (433)
T PF03092_consen   85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQG  155 (433)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeE
Confidence            1111222222233332222 2335566666422  337888999999999999999999999998876543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.35  E-value=0.92  Score=42.51  Aligned_cols=115  Identities=10%  Similarity=-0.017  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCc-eehHHHHHHHHHHHHHhHhhhcccc-ccc--CcCceEeehhhhHHHHHHH
Q 015348          240 LGISKVFGQAAMLLWGVIYNSGLKSVSPR-KLISAIQAMMAVFMISDVLFVKGVY-REM--GVPDSLYVLIFSSLLEVMF  315 (408)
Q Consensus       240 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~  315 (408)
                      .-.......++-.+|..+..+..- -++| +.+.+..+.-.+ .+..+++....+ ...  .+++.+ ..++..+..++.
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~i-FIPlf~lcn~~~~~~~p~~~~~d~-~~~~~~~l~glt  385 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVL-FIPLFLLCNYPQRSRLPVFFPGDA-YFIILMLLFGFS  385 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHH-HHHHHHHhcCCccccCCeeecccH-HHHHHHHHHHHh
Confidence            345677788899999886654321 1112 122222222111 122112111111 000  122222 333345555555


Q ss_pred             HHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 015348          316 FFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLG  357 (408)
Q Consensus       316 ~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~  357 (408)
                      .+-.... ..+..+.+++++|-.+-.+.+....+|-.+|..++
T Consensus       386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544444 55666777777777776666666777777776653

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.02  E-value=0.49  Score=44.84  Aligned_cols=127  Identities=17%  Similarity=0.159  Sum_probs=75.2

Q ss_pred             ChhhHHHHHHHHHH-HHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcC-----------ce--
Q 015348          236 RSSVLGISKVFGQA-AMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP-----------DS--  301 (408)
Q Consensus       236 ~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~--  301 (408)
                      +++....+-....+ +.++...+..++.+++++.+++............+..++.......+..+           ..  
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            56666666543333 45666778899999999998877665554444332221111111000000           00  


Q ss_pred             Eeehh----hhHHHHHHHH---Hhhhh-H-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          302 LYVLI----FSSLLEVMFF---FKILP-F-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALAS  362 (408)
Q Consensus       302 ~~~~~----~~~~~~~~~~---~~~~~-~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~  362 (408)
                      ++..+    ...+.+...+   ....+ . +.++.|.++.++..+.+++.....++|..+++.+...+.+
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000    0111222221   12223 3 8899999999999999999999999999999988888887

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.97  E-value=0.14  Score=44.81  Aligned_cols=117  Identities=16%  Similarity=0.062  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHH
Q 015348          238 SVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFF  317 (408)
Q Consensus       238 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
                      ...++......+...++.++.|++.||.|+|+.+..+........+....        ... ...+.........+++.+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~g~~~~  109 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL--------APN-VGLALLLILRLLQGLGGG  109 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh--------Ccc-chHHHHHHHHHHHHhhhH
Confidence            46777788888888888899999999998886665555432222111111        000 112223333333555555


Q ss_pred             hhhhH-HHHHHHhcCC-chhHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 015348          318 KILPF-SVYIAQVCPP-GCEGSIMAFVMS-AVALAFIVSGYLGVALASY  363 (408)
Q Consensus       318 ~~~~~-~~~~~~~~p~-~~~g~~~g~~~~-~~~lg~~ig~~~~g~l~~~  363 (408)
                      ...|. .++..+..|+ +.++...+.... ...++..+++.+++.+.+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         110 GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666 8889999988 678888888888 5778888999888888776

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=95.85  E-value=0.23  Score=42.29  Aligned_cols=134  Identities=15%  Similarity=0.132  Sum_probs=81.3

Q ss_pred             ceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceE
Q 015348          223 GTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSL  302 (408)
Q Consensus       223 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (408)
                      ....+|..+.+|+...++|.+...+....++...+.|.+.||-|||+.-..-.+...+.++.            -.+..+
T Consensus        57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT------------KhSpqY  124 (454)
T KOG4332|consen   57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT------------KHSPQY  124 (454)
T ss_pred             CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh------------hcCCce
Confidence            34455666778999999998888877777888888899999999998654444444443332            112333


Q ss_pred             eehhhhHHHHHHHHHhhhhH--HHHHHHhcCC-----chhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCC
Q 015348          303 YVLIFSSLLEVMFFFKILPF--SVYIAQVCPP-----GCEGSIMAFVMSA-VALAFIVSGYLGVALASYTGVTG  368 (408)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~-----~~~g~~~g~~~~~-~~lg~~ig~~~~g~l~~~~g~~~  368 (408)
                      .++.+.-...|+........  .=++.|+.++     +-....++=...+ +.+-..+++..+-.+.|.++..+
T Consensus       125 kVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGP  198 (454)
T KOG4332|consen  125 KVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGP  198 (454)
T ss_pred             EEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCC
Confidence            35555555555554433333  2255666532     2223334433333 33556677777778888887644

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.50  E-value=0.17  Score=47.08  Aligned_cols=119  Identities=15%  Similarity=0.192  Sum_probs=80.3

Q ss_pred             CCCHHHHHHHHHhhc-ccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccC--------------cc
Q 015348           12 NVDPSTLQLLQNSAN-LPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQS--------------SI   75 (408)
Q Consensus        12 ~~s~~~~g~~~~~~~-~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~--------------~~   75 (408)
                      +.+....-.+.++.. .+.+. ..+.+.+.+|  +|++||++.+.++..+..+..++.....+.              ..
T Consensus       274 ~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~r--ir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~  351 (461)
T KOG3098|consen  274 GSNTTYLIAIYSIGIGLGEVIGGLDFSILSKR--IRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTP  351 (461)
T ss_pred             cCcchhHHHHHHHHHhHHHHHHHHHHHHHhhh--hhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCccccccccc
Confidence            334433333333333 44444 6777888877  566899999999988887777766544321              12


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHH
Q 015348           76 SIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLV  142 (408)
Q Consensus        76 ~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~  142 (408)
                      +.....+.-++.|++.+..+......+.+..|++          |..+.++...-..++..++-...
T Consensus       352 ~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~----------~~~~fsi~kfyq~~~s~v~~f~~  408 (461)
T KOG3098|consen  352 SYYLALIIGFLLGFGDACFNTQRYVIIALLYPDD----------RAQAFSLFKFYQSVASCVAFFFS  408 (461)
T ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc----------hHHHHHHHHHHHHHHHHHHhhhh
Confidence            4667778889999999999999988998888542          66667766666666665544443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.44  E-value=0.58  Score=42.94  Aligned_cols=130  Identities=12%  Similarity=0.080  Sum_probs=84.2

Q ss_pred             eEEEEEec-cCCChhhHH-HHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceE
Q 015348          225 MFFYQTQN-LKIRSSVLG-ISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSL  302 (408)
Q Consensus       225 ~~~~~~~~-~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (408)
                      ..+|+.+. .|++.++.. -+.-...=..++..+....+.|..+.|.+++...+...+...+.++         +  ...
T Consensus        26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~---------~--~sv   94 (412)
T PF01770_consen   26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF---------G--TSV   94 (412)
T ss_pred             chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---------H--CcH
Confidence            33444444 788887765 2222222334445556667889999998888777665555444322         1  333


Q ss_pred             eehhhhHHHHHHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          303 YVLIFSSLLEVMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      ..+-...+..|+....-....+++-..+|+++--++.+...+..-+|..++..++-.+...-+
T Consensus        95 ~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~  157 (412)
T PF01770_consen   95 LAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG  157 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            344455566666666555557777778899988899998888888888888888776665433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=94.26  E-value=1.2  Score=41.60  Aligned_cols=130  Identities=12%  Similarity=0.178  Sum_probs=80.7

Q ss_pred             CChhhHHHHHHHHHH-HHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcc----cccc------c--CcC-c
Q 015348          235 IRSSVLGISKVFGQA-AMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKG----VYRE------M--GVP-D  300 (408)
Q Consensus       235 ~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~--~~~-~  300 (408)
                      .+++....+-...-+ ++++..++..++.++..+.+++...........++..+....    .|..      +  ..+ .
T Consensus        58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~  137 (509)
T COG3202          58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF  137 (509)
T ss_pred             CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence            456777777666555 677888899999999998888766555544443332222111    1111      0  112 1


Q ss_pred             eEeeh-----hhhHHHHHHHH---Hhhhh-H-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015348          301 SLYVL-----IFSSLLEVMFF---FKILP-F-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYT  364 (408)
Q Consensus       301 ~~~~~-----~~~~~~~~~~~---~~~~~-~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~  364 (408)
                      ..+.+     ....+.+.+.+   ..... + +....|++..++..+.+++++...+++..+++.+..++.++.
T Consensus       138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~  211 (509)
T COG3202         138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHR  211 (509)
T ss_pred             ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            11111     12233333332   11222 3 778899999999999999999999999999888888887643

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=94.17  E-value=0.049  Score=37.42  Aligned_cols=60  Identities=12%  Similarity=0.063  Sum_probs=49.3

Q ss_pred             eEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHH
Q 015348          225 MFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMIS  284 (408)
Q Consensus       225 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  284 (408)
                      ..|.+.++.++|..+.|++.+.+.++.++|.+...++.++.+.++.+..+.+...+....
T Consensus        14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~   73 (85)
T PF06779_consen   14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAA   73 (85)
T ss_pred             HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            344567778999999999999999999999999999998877778787777666665444

Note that many members are hypothetical proteins.

>PRK03612 spermidine synthase; Provisional

Probab=93.60  E-value=1.6  Score=41.94  Aligned_cols=144  Identities=15%  Similarity=0.119  Sum_probs=74.2

Q ss_pred             hhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHH---HHHHHHHHHHhc-cCcchHHHHH
Q 015348            7 LKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFL---QAVSWLAIAILS-QSSISIFTMS   81 (408)
Q Consensus         7 l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~   81 (408)
                      +..-+|-+..+.+.+.+++..+..+ +.+.|.+.++     ..|+ ....-..+   ..++..+..... .........+
T Consensus        41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-----~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~  114 (521)
T PRK03612         41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-----AAAG-FVAVELLLALLGGLSALILYAAFAFQGLSRLLLY  114 (521)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445678888888888888877666 5555655533     2222 22111111   111111111111 0000112223


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh-hcCChhhHHHHHHH
Q 015348           82 LFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAI-DRFSPPSMFLFFGL  160 (408)
Q Consensus        82 ~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~-~~~g~~~~f~i~~~  160 (408)
                      ...++.++..|...|....+..+..++          +-|+..+..+....+|.++|.++.+++. ..+|-....++.+.
T Consensus       115 ~~~~~~~~l~G~~~Pl~~~~~~~~~~~----------~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~  184 (521)
T PRK03612        115 VLVLLIGLLIGMEIPLLMRILQRIRDQ----------HLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGS  184 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccc----------chhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            334455666666666553433322111          1345556666699999999999888765 46786555555555


Q ss_pred             HHHHHH
Q 015348          161 LVVLQF  166 (408)
Q Consensus       161 ~~~~~~  166 (408)
                      +.++..
T Consensus       185 l~~~~a  190 (521)
T PRK03612        185 LNLLAA  190 (521)
T ss_pred             HHHHHH
Confidence            544443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=93.37  E-value=0.5  Score=43.35  Aligned_cols=82  Identities=17%  Similarity=0.070  Sum_probs=58.5

Q ss_pred             ehhhhHHHHHHHHHhhhhH-HHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHH
Q 015348          304 VLIFSSLLEVMFFFKILPF-SVYIAQVCPPG---CEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALI  379 (408)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~---~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~  379 (408)
                      .+.......++|.+..=|. ..+..|..+++   ++.+.+..+....|+|..++....+++.+..|+        ...+.
T Consensus        35 ~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~--------~~~f~  106 (372)
T PF00854_consen   35 LFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGW--------FLGFG  106 (372)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-H--------HHHHH
T ss_pred             HHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccch--------hhhhh
Confidence            4555566667777777777 78888887765   566778888888999999999999999876653        44555


Q ss_pred             HHHhhhhhhhhhhh
Q 015348          380 IQAVCTILPLYWSY  393 (408)
Q Consensus       380 ~~~~~~~~~~~~~~  393 (408)
                      ++.++.++++..+.
T Consensus       107 i~~~~~~~~~~~f~  120 (372)
T PF00854_consen  107 IPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66665555555444

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.19  E-value=0.026  Score=51.51  Aligned_cols=129  Identities=12%  Similarity=0.032  Sum_probs=80.7

Q ss_pred             EeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCceehHHHHHHHHHHHHHhHhhhcccccccCcC----ce
Q 015348          230 TQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKS----VSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVP----DS  301 (408)
Q Consensus       230 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  301 (408)
                      .+.+|.+.+..+.+.....+.+++..++.|..+||    +||||..+..........+............++-.    ..
T Consensus        59 l~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~  138 (498)
T KOG0637|consen   59 LQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVK  138 (498)
T ss_pred             HHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccc
Confidence            34589999999999999999999999999999886    68888776665444443222111111111111111    11


Q ss_pred             EeehhhhHHHH----HHHHHhhhhHHHHHHHhcCCchhHH-HHHHHHHHHHHHHHHHHHHHH
Q 015348          302 LYVLIFSSLLE----VMFFFKILPFSVYIAQVCPPGCEGS-IMAFVMSAVALAFIVSGYLGV  358 (408)
Q Consensus       302 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~g~-~~g~~~~~~~lg~~ig~~~~g  358 (408)
                      ...+....+..    ........|.-++..+.+.++++-+ +++.+..+..+|+.+|-.+++
T Consensus       139 ~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  139 PRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             hHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            11222222222    2233445577888999988777777 888888888888888776665

>PRK03612 spermidine synthase; Provisional

Probab=93.02  E-value=0.5  Score=45.35  Aligned_cols=131  Identities=16%  Similarity=0.041  Sum_probs=65.0

Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHH
Q 015348          233 LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLE  312 (408)
Q Consensus       233 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
                      +|-+....+.+.+....+..+|+.+.+++.++.. ++....-..+..+..+....+.....  +.. ..........+..
T Consensus        45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~-~~~~~~e~~i~l~~~~~~~ll~~~~~--~~~-~~~~~~~~~~~~~  120 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAA-AGFVAVELLLALLGGLSALILYAAFA--FQG-LSRLLLYVLVLLI  120 (521)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHH
Confidence            5777778888888888888899988887763322 22111111111111111111000000  000 0000111112222


Q ss_pred             HHHHHhhhhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC
Q 015348          313 VMFFFKILPFSVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALAS-YTGVT  367 (408)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~-~~g~~  367 (408)
                      ++..+...|..+-+.+....+..|+..|-......+|+.+|+++.+++.- .+|..
T Consensus       121 ~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~  176 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLI  176 (521)
T ss_pred             HHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchH
Confidence            33334445652222222222335666777888889999999998887654 66654

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=90.68  E-value=14  Score=34.08  Aligned_cols=30  Identities=13%  Similarity=0.187  Sum_probs=19.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 015348           76 SIFTMSLFLLLSNLGASIAEVANDALVAEM  105 (408)
Q Consensus        76 ~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~  105 (408)
                      .++..++..++.+.+.+..+........+.
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~  145 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF  145 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhcC
Confidence            566666777778888887776554544443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=90.23  E-value=2.5  Score=39.40  Aligned_cols=123  Identities=17%  Similarity=0.092  Sum_probs=85.6

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHH---HHhccC---cchHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAI---AILSQS---SISIF   78 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~---~~~~~~---~~~~~   78 (408)
                      |++.+ |+|+.++|..-+...+..+. .....++.+|     +|..+.-.++......+..++   .+.+..   ..+..
T Consensus       284 yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-----iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~  357 (432)
T PF06963_consen  284 YLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-----IGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY  357 (432)
T ss_pred             HHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence            45444 99999999999888865555 6777888889     888777666655544333332   233321   23555


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHH
Q 015348           79 TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVG  143 (408)
Q Consensus        79 ~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~  143 (408)
                      .++.+-++.=+|.=..+....-++-|..|++         +||..++.-+...++-.++-..++-
T Consensus       358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~---------~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  358 LLLGGIALSRIGLWSFDLAVTQIMQENVPES---------ERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhcccCCHH---------HhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            5666667777777788888878888877765         4999999888888888777766543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=88.86  E-value=3.8  Score=37.69  Aligned_cols=61  Identities=20%  Similarity=0.101  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 015348           76 SIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFA  145 (408)
Q Consensus        76 ~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l  145 (408)
                      +.|..++.-+..|+..|..++.....+.|..+++         +|...++....+-++|..++..++-.+
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~---------~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPE---------DREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            8888888899999999999988888887766554         488889988888888888888776554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=87.77  E-value=4.4  Score=36.79  Aligned_cols=48  Identities=19%  Similarity=0.106  Sum_probs=23.8

Q ss_pred             eeEEEEEeccCCChhhHHHHHHHHH--HHHHHHHHHHH-HhhccCCCceehH
Q 015348          224 TMFFYQTQNLKIRSSVLGISKVFGQ--AAMLLWGVIYN-SGLKSVSPRKLIS  272 (408)
Q Consensus       224 ~~~~~~~~~~g~~~~~~g~~~~~~~--~~~~~~~~~~~-~l~~~~~~~~~~~  272 (408)
                      ..|.. .+.-|.|-+..+.......  ..-++.+++.. ...+|+||||...
T Consensus        52 ~iP~l-L~ak~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWv  102 (510)
T KOG3574|consen   52 AIPLL-LQAKGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWV  102 (510)
T ss_pred             hhHHH-hcCCCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhcccccee
Confidence            34433 3345666666655443322  22333333333 3455899887643

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=86.09  E-value=1.3  Score=39.08  Aligned_cols=103  Identities=10%  Similarity=0.030  Sum_probs=60.8

Q ss_pred             cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCc
Q 015348           32 KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMT  111 (408)
Q Consensus        32 ~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~  111 (408)
                      +.+.+.+..+     +|-|..+.++.........     ......+..++-.-...|++.+..+..--+++.+..++...
T Consensus        75 ~m~~~~~Ir~-----~g~K~tm~lav~~Y~lyiA-----~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~  144 (390)
T KOG3097|consen   75 SMFMPLLIRF-----LGTKWTMVLAVFPYALYIA-----ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYAN  144 (390)
T ss_pred             HHHHHHHHHH-----HhhHHHHHHHHHHHHHHHH-----hhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHH
Confidence            3444456666     8999988887665543322     21223677888888888988888777666677666654331


Q ss_pred             cc--hhhccCcchhHHHHHHHHHHHHHHHHHHHHH
Q 015348          112 SS--KKAQSSSGELQSFVWMSSSMGGVLGNLLVGF  144 (408)
Q Consensus       112 ~~--~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~  144 (408)
                      .+  +..|....+..+.+.+...-+...|..++..
T Consensus       145 ~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issl  179 (390)
T KOG3097|consen  145 QRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSL  179 (390)
T ss_pred             hhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHH
Confidence            11  0011133556666666666666666554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.95
2xut_A	524	Proton/peptide symporter family protein; transport	99.93
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.35
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.34
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.32
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.29
2xut_A	524	Proton/peptide symporter family protein; transport	99.25
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.21
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.96

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=1e-34  Score=272.00  Aligned_cols=334  Identities=13%  Similarity=0.075  Sum_probs=260.9

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHH----hccCcchHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAI----LSQSSISIFTM   80 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~   80 (408)
                      ++.+++ .|+.+.|++.+...++..+ ++++|+++||     +|||++++.+.++.+++.+++++    .+    +++.+
T Consensus        53 ~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~l  122 (451)
T 1pw4_A           53 YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-----SNPRVFLPAGLILAAAVMLFMGFVPWATS----SIAVM  122 (451)
T ss_dssp             HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHHHHHCHHHHS----SSSHH
T ss_pred             HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-----cCchHHHHHHHHHHHHHHHHHHhhhhccc----cHHHH
Confidence            345678 9999999999999988777 9999999999     99999999999999999999999    88    89999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhhHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS-PPSMFLFFG  159 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g-~~~~f~i~~  159 (408)
                      ++.|++.|++.+...+...+++.|+.|+++         |++++++.+...++|.+++|.+++.+.+..| ||+.|++.+
T Consensus       123 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~  193 (451)
T 1pw4_A          123 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA  193 (451)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHTTCTTTH---------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred             HHHHHHHHHHhhhccchHHHHHHHHCCchh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            999999999999999999999999998753         9999999999999999999999999889898 999999999


Q ss_pred             HHHHHHHHHh-hhcccccccCCCCCc----ch-------h--HHHHHHH--HHHhcccchhHHHHHHHHhhhcccccccc
Q 015348          160 LLVVLQFFIT-IAVRESALKLPKSQS----NV-------G--IRAQLSE--LSAALRKPEIMYSVAWFAASYSIIPVLTG  223 (408)
Q Consensus       160 ~~~~~~~~~~-~~~~e~~~~~~~~~~----~~-------~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (408)
                      ++.++..+.. +++||++++....++    ++       +  .+...++  .++.+++|.++...+..++..........
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (451)
T 1pw4_A          194 FCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD  273 (451)
T ss_dssp             HHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887765544 457776543211100    00       0  0111111  34568889888887777765555555566


Q ss_pred             eeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC--CCceehHHHHHHHHHHHHHhHhhhcccccccCcCce
Q 015348          224 TMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSV--SPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDS  301 (408)
Q Consensus       224 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (408)
                      ..+.|..+.+|+++.+.+.......++.+++.++.+++.||+  ++|+.+..+..+.....+....        ......
T Consensus       274 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  345 (451)
T 1pw4_A          274 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW--------MNPAGN  345 (451)
T ss_dssp             HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT--------SCCTTC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH--------HhcccC
Confidence            677777777899999999999999999999999999999999  8888777666555422222111        111112


Q ss_pred             EeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCC
Q 015348          302 LYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVAL-AFIVSGYLGVALASYTGV  366 (408)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~ig~~~~g~l~~~~g~  366 (408)
                      .+.........+++.....+. ..+..|..|+++||+++|+.+...++ |..++|.+.|.+.|..|+
T Consensus       346 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~  412 (451)
T 1pw4_A          346 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW  412 (451)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            223334444455554444454 78999999999999999999999999 999999999999998764

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=3.1e-33  Score=261.00  Aligned_cols=326  Identities=10%  Similarity=0.032  Sum_probs=257.2

Q ss_pred             hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHH---HHhccCcchHHHH
Q 015348            5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAI---AILSQSSISIFTM   80 (408)
Q Consensus         5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~   80 (408)
                      .++++++|.|+.+.|++.+...++..+ ++++|+++||     +|||+.++.+.++.+++.+++   .+.+    +++.+
T Consensus        50 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~~~~~~----~~~~l  120 (438)
T 3o7q_A           50 PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-----LSYKAGIITGLFLYALGAALFWPAAEIM----NYTLF  120 (438)
T ss_dssp             HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHHHHHHHHTT----CHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHhccccc----cHHHH
Confidence            356789999999999999999988776 9999999999     999999999999999999998   7777    99999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh-hcCC---------
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAI-DRFS---------  150 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~-~~~g---------  150 (408)
                      ++.|++.|++.+...+..++++.|+.|+++         |++.+++.+...++|.+++|.+++.+. +..+         
T Consensus       121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~  191 (438)
T 3o7q_A          121 LVGLFIIAAGLGCLETAANPFVTVLGPESS---------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDK  191 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCSTT---------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHH
T ss_pred             HHHHHHHHhhHHHhhhhHHHHHHHHcCchh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            999999999999999999999999999764         999999999999999999999999998 5555         


Q ss_pred             ----------------hhhHHHHHHHHHHHHHHHhhh--cccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHH
Q 015348          151 ----------------PPSMFLFFGLLVVLQFFITIA--VRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFA  212 (408)
Q Consensus       151 ----------------~~~~f~i~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (408)
                                      ||+.|++.+...++..+..++  .||+++++++++++++.+   ++.++.+|+|.++...+..+
T Consensus       192 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  268 (438)
T 3o7q_A          192 MSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFS---ASLSRLARIRHWRWAVLAQF  268 (438)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHH---HHHHHHTTCSHHHHHHHHHH
T ss_pred             CCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchh---hhHHHHHhChHHHHHHHHHH
Confidence                            999998887777666555444  344433322222222333   33445589999988887776


Q ss_pred             hhhcccccccceeEEE-EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcc
Q 015348          213 ASYSIIPVLTGTMFFY-QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKG  291 (408)
Q Consensus       213 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (408)
                      +..........+.+.| ..+.+|+++.+.+.......++.+++.++.+++.||+++|+.+..+.++..+..+....    
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~----  344 (438)
T 3o7q_A          269 CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF----  344 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH----
Confidence            6555555555666677 66767999999999999999999999999999999999999888777666555443221    


Q ss_pred             cccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          292 VYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                            .++.  .........+++.....|. .++..|..|++ +++..++.. ...++..++|.+.|.+.|..|
T Consensus       345 ------~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          345 ------AGGH--VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_dssp             ------CCHH--HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred             ------cCCc--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence                  1111  1122234445555555666 77878888866 888888776 778999999999999999988

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=9.3e-31  Score=247.86  Aligned_cols=342  Identities=10%  Similarity=0.041  Sum_probs=237.7

Q ss_pred             hhhhhhc-----cCCCHHHHHHHHHhhcccccc-cchheeecccccccCC-cchhHHHHHHHHHHHHHHHHHHhccCcch
Q 015348            4 NFFLKDS-----LNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQ-HRVPYIAIGAFLQAVSWLAIAILSQSSIS   76 (408)
Q Consensus         4 ~~~l~~~-----l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~-grk~~l~~~~~~~~~~~~~~~~~~~~~~~   76 (408)
                      ..|++++     +|.|+.+.+++.+...++..+ ++++|+++||     + |||+.+..+.++..++.+++++++    +
T Consensus        37 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~~g~r~~~~~~~~~~~~~~~~~~~~~----~  107 (491)
T 4aps_A           37 LYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADR-----IIGARPAVFWGGVLIMLGHIVLALPF----G  107 (491)
T ss_dssp             HHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHSCC----S
T ss_pred             HHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccchHHHHHHHHHHHHHHHHHHHhh----h
Confidence            4456665     999999999999999987777 9999999999     6 999999999999999999999888    9


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHH
Q 015348           77 IFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFL  156 (408)
Q Consensus        77 ~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~  156 (408)
                      ++.+++.|++.|++.+...+...+++.|+.|++++       .|++..+..+...++|..++|.+++.+.+..|||+.|+
T Consensus       108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~  180 (491)
T 4aps_A          108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR-------RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS  180 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc-------cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999999999999998652       47888998999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhc-ccccccC---CCCC-cchhHHHHHHH-------------------------------------
Q 015348          157 FFGLLVVLQFFITIAV-RESALKL---PKSQ-SNVGIRAQLSE-------------------------------------  194 (408)
Q Consensus       157 i~~~~~~~~~~~~~~~-~e~~~~~---~~~~-~~~~~~~~~~~-------------------------------------  194 (408)
                      +.++..++..+...+. ++..+++   ++++ ++++.++..+.                                     
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (491)
T 4aps_A          181 LAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAI  260 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHH
Confidence            9887776665554432 2221111   1111 11111111100                                     


Q ss_pred             -----------HHH--hccc--chhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHH
Q 015348          195 -----------LSA--ALRK--PEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYN  259 (408)
Q Consensus       195 -----------~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  259 (408)
                                 ...  ..++  ...+...+..++.+..........+.|..+..+.+....+.......++.+++..+.+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (491)
T 4aps_A          261 PVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFA  340 (491)
T ss_dssp             HHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHH
Confidence                       000  0111  1122233233332333333444445555555676666777777888888888999999


Q ss_pred             HhhccCCCceehH-----HHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCc
Q 015348          260 SGLKSVSPRKLIS-----AIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPG  333 (408)
Q Consensus       260 ~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~  333 (408)
                      ++.||+++|+...     .+..+.++.............  ...+...+......+..+++.....|. ..+..|..|++
T Consensus       341 ~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~  418 (491)
T 4aps_A          341 WLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG--TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA  418 (491)
T ss_dssp             HHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC--CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT
T ss_pred             HHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence            9999999886554     444443333322111000000  001122234445556666766665666 88999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          334 CEGSIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       334 ~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                      .||++.|+.+...++|..+++.+.+.+.+.
T Consensus       419 ~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~  448 (491)
T 4aps_A          419 FNSQMMSMWFLSSSVGSALNAQLVTLYNAK  448 (491)
T ss_dssp             CSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999998887653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.97  E-value=1.4e-32  Score=251.20  Aligned_cols=326  Identities=14%  Similarity=0.085  Sum_probs=250.8

Q ss_pred             hhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 015348            7 LKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLL   85 (408)
Q Consensus         7 l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (408)
                      +.+++|.|+.+.+++.+...++..+ ++++|+++||     +|||+.+..+.....++.+++.+.+    +++.+++.|+
T Consensus        26 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~   96 (375)
T 2gfp_A           26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-----VGRRPVILVGMSIFMLATLVAVTTS----SLTVLIAASA   96 (375)
T ss_dssp             HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-----SCCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCchhHHHHHHHHHHHHHHHHHhc----cHHHHHHHHH
Confidence            5688999999999999999988777 9999999999     9999999999999999999999998    9999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q 015348           86 LSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQ  165 (408)
Q Consensus        86 l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~  165 (408)
                      +.|++.+...+..++++.|+.|+++         |++.++..+...++|..++|.+++.+.+..|||+.|++.++..++.
T Consensus        97 l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  167 (375)
T 2gfp_A           97 MQGMGTGVGGVMARTLPRDLYERTQ---------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV  167 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSS---------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHCCHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            9999999999999999999998764         9999999999999999999999999998889999999988887776


Q ss_pred             HH-HhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHH
Q 015348          166 FF-ITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISK  244 (408)
Q Consensus       166 ~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~  244 (408)
                      .+ ..+++||++++++++++   .++   +.++.+|+|.++...+..++............+.|..+.+|.++.+.+...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~  241 (375)
T 2gfp_A          168 TFSMARWMPETRPVDAPRTR---LLT---SYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILF  241 (375)
T ss_dssp             HCCCCCSSCCCSTTTCCCCC---TTT---CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcccCCCCccccc---HHH---HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            65 34457776554332211   111   122346778877777766665555555566677777777899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-H
Q 015348          245 VFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-S  323 (408)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  323 (408)
                      ....++.+++.++.+++.||.++  ....+.................      .....+.........+++.....|. .
T Consensus       242 ~~~~~~~~~~~~~~~~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~g~~~~~~~~~~~  313 (375)
T 2gfp_A          242 ILPIPAAFFGAWFAGRPNKRFST--LMWQSVICCLLAGLLMWIPDWF------GVMNVWTLLVPAALFFFGAGMLFPLAT  313 (375)
T ss_dssp             HTHHHHHHHHHHHHHTTTTHHHH--HHHHHHHHHHHTSSSSSHHHHH------HHHHHHHHHHHHHHHHHHHHHTSSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh------ccccHHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999876  2222222211111110000000      0011222333445555666555666 8


Q ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          324 VYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       324 ~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      ++..|..| ++||++.|+.+...++|..++|.+.|.+.+..+
T Consensus       314 ~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  354 (375)
T 2gfp_A          314 SGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ  354 (375)
T ss_dssp             HHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred             HHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            88999998 899999999999999999999999999887654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=1.2e-28  Score=233.29  Aligned_cols=368  Identities=16%  Similarity=0.079  Sum_probs=241.3

Q ss_pred             CHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhcc--------------CcchHH
Q 015348           14 DPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQ--------------SSISIF   78 (408)
Q Consensus        14 s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~--------------~~~~~~   78 (408)
                      ++.+.|++.+...++..+ ++++|+++||     +|||+.++++.++..++.+++++.+.              ...+++
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-----~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~  127 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNR-----FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVP  127 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHH
Confidence            346778888888888887 8999999999     99999999999999999999885221              012899


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--------CC
Q 015348           79 TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR--------FS  150 (408)
Q Consensus        79 ~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~--------~g  150 (408)
                      .+++.|+++|++.|...+....++.|..|+++         |++..+..+.+...|.++++.++......        .+
T Consensus       128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~---------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  198 (491)
T 4gc0_A          128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI---------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG  198 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG---------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh---------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence            99999999999999999999999999999864         99999999999999999998888776543        34


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhcccccccCCCCCcchhHH--------------------HHHHH------HHHhcccchh
Q 015348          151 PPSMFLFFGLLVVLQFFITIAVRESALKLPKSQSNVGIR--------------------AQLSE------LSAALRKPEI  204 (408)
Q Consensus       151 ~~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--------------------~~~~~------~~~~~~~~~~  204 (408)
                      ||..+.+..+..++..+..+++||+|+....++++++.+                    +...+      .....+.+..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (491)
T 4gc0_A          199 WRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVI  278 (491)
T ss_dssp             HHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHH
T ss_pred             hHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHH
Confidence            788888777777777777778999875321111110000                    00000      0011222222


Q ss_pred             HHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHH
Q 015348          205 MYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMIS  284 (408)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  284 (408)
                      ........+.............++..+..+.+...........++..+++.++.+++.||+|+|+.+..+.....+..+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~  358 (491)
T 4gc0_A          279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS  358 (491)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence            22222222212211111111222233446667777777777888889999999999999999999888777666655433


Q ss_pred             hHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          285 DVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                      ......      .....+..+....+..........|. +.+.+|..|.+.|+++.|+.+..+++++.+++.+.+.+.+.
T Consensus       359 l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~  432 (491)
T 4gc0_A          359 LGTAFY------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN  432 (491)
T ss_dssp             HHHHHH------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred             HHHHHh------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221110      01111111122222222333445566 78999999999999999999999999999999888776553


Q ss_pred             cCCCCCCCCchHHHHHHHHhhhhhhhhhhhccCCCCCCc
Q 015348          364 TGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSK  402 (408)
Q Consensus       364 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (408)
                      ...... ........+.++++.+..+..++++||++++.
T Consensus       433 ~~~~~~-~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          433 SWLVAH-FHNGFSYWIYGCMGVLAALFMWKFVPETKGKT  470 (491)
T ss_dssp             HHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred             HHHHhh-hhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence            221110 01112223334444444445567889987654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.95  E-value=4.4e-30  Score=237.82  Aligned_cols=335  Identities=13%  Similarity=0.104  Sum_probs=207.5

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHH---HHhccCcchH-
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAI---AILSQSSISI-   77 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~---~~~~~~~~~~-   77 (408)
                      ++.|+++++|.|+.+.|++.+...+...+ +|++|+++||     +|||+.++.+..+..+.....   .+.+    .. 
T Consensus        30 ~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-----~Grr~~l~~~~~~~~~~~~~~~~~~~~~----~~~  100 (417)
T 2cfq_A           30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-----LGLRKYLLWIITGMLVMFAPFFIFIFGP----LLQ  100 (417)
T ss_dssp             HHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-----STTCCHHHHHHHHTTSCHHHHHHHTHHH----HHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence            45678888999999999999999977777 9999999999     999999998877665422111   1211    11 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHH
Q 015348           78 FTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLF  157 (408)
Q Consensus        78 ~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i  157 (408)
                      ......+.+.+++.+...+...+...++.++.+  +     +++...+..+...++|..++|.+++++.+ .+||..|++
T Consensus       101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~-----~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~  172 (417)
T 2cfq_A          101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS--R-----RSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWL  172 (417)
T ss_dssp             TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH--H-----HHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh--h-----hcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHH
Confidence            112334444444444433333333444433321  1     35666666666778899999999999887 589999988


Q ss_pred             HHHHHHHHHHHhhhccccccc-C--CCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccC
Q 015348          158 FGLLVVLQFFITIAVRESALK-L--PKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLK  234 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~e~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  234 (408)
                      .++..++..+..++.+|++++ .  ++++++++.+...++.++.+++|.++...+..+...........+.+.|+.+.++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (417)
T 2cfq_A          173 GSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA  252 (417)
T ss_dssp             TTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777655544444444433211 1  0100000001112334556888888776655333222222222223333333333


Q ss_pred             ---CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHH
Q 015348          235 ---IRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLL  311 (408)
Q Consensus       235 ---~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                         .+....+.......++.+++..+.+++.||+++|+.+..+....++..+..           ......+.+......
T Consensus       253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l  321 (417)
T 2cfq_A          253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS-----------SFATSALEVVILKTL  321 (417)
T ss_dssp             SHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----------TTCCSHHHHHHHTTH
T ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH-----------HHhccHHHHHHHHHH
Confidence               234556777888888889999999999999999998876665555443321           111111122222223


Q ss_pred             HHHHHHhhhhH-HHHHHHhcCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          312 EVMFFFKILPF-SVYIAQVCPPGCEGSIMAF-VMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       312 ~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~-~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      .+++.....+. ..+..|..|++.||+.++. ++...++|+.++|.++|.+.+..|
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g  377 (417)
T 2cfq_A          322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG  377 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC
Confidence            33333333333 7789999999999999999 488889999999999999998755

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.93  E-value=1.3e-25  Score=214.34  Aligned_cols=341  Identities=15%  Similarity=0.123  Sum_probs=210.0

Q ss_pred             hhhhhhhccC------CCHHHHHHHHHhhcccccc-cchheeecccccccCC-cchhHHHHHHHHHHHHHHHHHHhccCc
Q 015348            3 VNFFLKDSLN------VDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQ-HRVPYIAIGAFLQAVSWLAIAILSQSS   74 (408)
Q Consensus         3 ~~~~l~~~l~------~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~-grk~~l~~~~~~~~~~~~~~~~~~~~~   74 (408)
                      +..|+++++|      .|+.+.|++.+...++..+ .+++|+++||     + |||+.+..+.++..++.+++.+.+   
T Consensus        35 l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-----~~g~r~~~~~~~~~~~~~~~~~~~~~---  106 (524)
T 2xut_A           35 LTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-----FFGKYNTILWLSLIYCVGHAFLAIFE---  106 (524)
T ss_dssp             HHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-----SSCSHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred             HHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHhc---
Confidence            3567888999      9999999999999977766 8999999999     9 999999999999999888887764   


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhH---HHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 015348           75 ISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQ---SFVWMSSSMGGVLGNLLVGFAIDRFSP  151 (408)
Q Consensus        75 ~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~g~~ig~~l~~~l~~~~g~  151 (408)
                      .+++.+++.|++.|++.+...+...+++.|..|+++         |++..   ++.+...++|..+||.+++.+.+..||
T Consensus       107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  177 (524)
T 2xut_A          107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA  177 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH
T ss_pred             ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            268889999999999999999999999999999865         65544   448889999999999999999998999


Q ss_pred             hhHHHHHHHHHHHHHHHhhhcc-cccccCCCCCcchhH--------H------HH---HHH-------------------
Q 015348          152 PSMFLFFGLLVVLQFFITIAVR-ESALKLPKSQSNVGI--------R------AQ---LSE-------------------  194 (408)
Q Consensus       152 ~~~f~i~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~--------~------~~---~~~-------------------  194 (408)
                      |+.|++.++..++..+...+.+ +.+++++++++..+.        +      +.   ...                   
T Consensus       178 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (524)
T 2xut_A          178 AVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGI  257 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhh
Confidence            9999998888776655544322 211111100000000        0      00   000                   


Q ss_pred             ----------------------HH---------HhcccchhHHHHHHHHh---hhcccccccceeEEEEEeccCCCh-hh
Q 015348          195 ----------------------LS---------AALRKPEIMYSVAWFAA---SYSIIPVLTGTMFFYQTQNLKIRS-SV  239 (408)
Q Consensus       195 ----------------------~~---------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~-~~  239 (408)
                                            ..         +..+++..+........   .+..........+.+ ....+.+. ..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  336 (524)
T 2xut_A          258 VAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQ-ANDMVKPQWFE  336 (524)
T ss_dssp             SHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHH-HHHSCCCSSSC
T ss_pred             hhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHh-HHhcCCCeeec
Confidence                                  00         00011222222211111   111111111111111 11122211 13


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh----ccCCCc----eehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHH
Q 015348          240 LGISKVFGQAAMLLWGVIYNSGL----KSVSPR----KLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLL  311 (408)
Q Consensus       240 ~g~~~~~~~~~~~~~~~~~~~l~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                      .+.......++.++...+.+++.    +|.++|    +.+..+..+.++..+..... ..... .......+.+....+.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~l  414 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTI-QLMMD-GGSALSIFWQILPYAL  414 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTT-TTTTT-TTCCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHhc-CCCCcCHHHHHHHHHH
Confidence            45555554555555555555543    444322    23344444444333321110 00000 0011222234455566


Q ss_pred             HHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348          312 EVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY  363 (408)
Q Consensus       312 ~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~  363 (408)
                      .+++.....|. .++..|..|++.||+++|+.++..++|+.++|.+.|.+.+.
T Consensus       415 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          415 LTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             HHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            66766666666 88899999999999999999999999999999999988763

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.35  E-value=2e-12  Score=120.50  Aligned_cols=154  Identities=13%  Similarity=0.078  Sum_probs=127.5

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCC--cchhHHHHHHHHHH-HHHHHHHHhccCcchHH
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQ--HRVPYIAIGAFLQA-VSWLAIAILSQSSISIF   78 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~--grk~~l~~~~~~~~-~~~~~~~~~~~~~~~~~   78 (408)
                      .+.|+++++|.++.+.+++.+...+..++ .++.|+++||     +  +||+.+..+..+.. ++.+++.+.+  ..+.+
T Consensus       275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  347 (451)
T 1pw4_A          275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-----VFRGNRGATGVFFMTLVTIATIVYWMNP--AGNPT  347 (451)
T ss_dssp             HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSTTCHHHHHHHHHHHHHHHHHHTTSCC--TTCHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCchhHHHHHHHHHHHHHHHHHHhc--ccCHH
Confidence            35677777999999999999998876666 8999999999     8  99998887776665 5555554443  22677


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHH-HHHHHHHHHHHHhhcCChhhHHHH
Q 015348           79 TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSM-GGVLGNLLVGFAIDRFSPPSMFLF  157 (408)
Q Consensus        79 ~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~ig~~l~~~l~~~~g~~~~f~i  157 (408)
                      .+....++.|++.+...+...+++.|..|+++         |++++++.+....+ |..++|.+.|.+.+..||+..|++
T Consensus       348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  418 (451)
T 1pw4_A          348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKA---------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV  418 (451)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHhchhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            77888888999888888888899999998753         99999999999999 999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 015348          158 FGLLVVLQFFITIAV  172 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~  172 (408)
                      .+++.++..+..++.
T Consensus       419 ~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          419 MIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888887776655553

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.34  E-value=4e-12  Score=119.90  Aligned_cols=153  Identities=11%  Similarity=-0.010  Sum_probs=116.0

Q ss_pred             hhHHHHHHHHhhhcccccccceeEEEEEec-----cCCChhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCceehHHHHH
Q 015348          203 EIMYSVAWFAASYSIIPVLTGTMFFYQTQN-----LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKS-VSPRKLISAIQA  276 (408)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~  276 (408)
                      .++......++............+.|..+.     +|.+..+.+++.+...++..++.++.|++.|| +|+|+.+..+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~   93 (491)
T 4aps_A           14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV   93 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            334444444333333333334455566665     89999999999999999999999999999999 899999988887


Q ss_pred             HHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCch--hHHHHHHHHHHHHHHHHHH
Q 015348          277 MMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGC--EGSIMAFVMSAVALAFIVS  353 (408)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~--~g~~~g~~~~~~~lg~~ig  353 (408)
                      +..+..+...           ..++.+.+....+..+++.+...|. .+++.|..|+++  |++.++..+...++|..++
T Consensus        94 ~~~~~~~~~~-----------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  162 (491)
T 4aps_A           94 LIMLGHIVLA-----------LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA  162 (491)
T ss_dssp             HHHHHHHHHH-----------SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-----------HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence            7776655422           1233335556667777777767777 899999999988  7888998999999999999


Q ss_pred             HHHHHHHHHhcCC
Q 015348          354 GYLGVALASYTGV  366 (408)
Q Consensus       354 ~~~~g~l~~~~g~  366 (408)
                      |.+++.+.+..|+
T Consensus       163 ~~~~~~l~~~~g~  175 (491)
T 4aps_A          163 PLIVGAAQEAAGY  175 (491)
T ss_dssp             HHHHHHHHHHSCH
T ss_pred             HHHHHHHHhhhhH
Confidence            9999999988664

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.32  E-value=3.4e-12  Score=118.44  Aligned_cols=126  Identities=8%  Similarity=-0.042  Sum_probs=105.2

Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      ...+++|.+..+.|++.+...++..++.++.|++.||+|+|+.+..+.++.++..+.....        ....+.+.+..
T Consensus        51 ~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~  122 (438)
T 3o7q_A           51 QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA--------AEIMNYTLFLV  122 (438)
T ss_dssp             HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH--------HHTTCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc--------cccccHHHHHH
Confidence            3567799999999999999999999999999999999999999998888877765553110        11233345566


Q ss_pred             hHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348          308 SSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALA  361 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~  361 (408)
                      ..+..+++.+...|. .+++.|..|+++|++..++.+...++|..++|.+++.+.
T Consensus       123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677778887777766 899999999999999999999999999999999999998

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.29  E-value=2.2e-12  Score=117.19  Aligned_cols=126  Identities=13%  Similarity=0.030  Sum_probs=104.3

Q ss_pred             EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348          229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS  308 (408)
Q Consensus       229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                      +.+++|.++.+.++..+...++..++.++.|++.||+|+|+.+..+.....+.......           .++.+.+...
T Consensus        26 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~   94 (375)
T 2gfp_A           26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT-----------TSSLTVLIAA   94 (375)
T ss_dssp             HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-----------hccHHHHHHH
Confidence            45668999999999999999999999999999999999999999888777766554322           1222345555


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      .+..+++.....|. .+++.|..|+++|++.++..+...++|..++|.+++.+.+..|
T Consensus        95 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  152 (375)
T 2gfp_A           95 SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN  152 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence            66677777766777 8899999999999999999999999999999999999987655

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.25  E-value=1.1e-11  Score=117.85  Aligned_cols=154  Identities=10%  Similarity=-0.034  Sum_probs=112.1

Q ss_pred             chhHHHHHHHHhhhcccccccceeEEEEEeccC------CChhhHHHHHHHHHHHHHHHHHHHHHhhccC-CCceehHHH
Q 015348          202 PEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLK------IRSSVLGISKVFGQAAMLLWGVIYNSGLKSV-SPRKLISAI  274 (408)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~  274 (408)
                      |.++...+..++............+.|..+++|      .++.+.|++.....++..++.++.|++.||+ |+|+.+..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~   91 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL   91 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            344444444444333333334445556666788      9999999999999999999999999999999 999998888


Q ss_pred             HHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHH---HHHHHHHHH
Q 015348          275 QAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAF---VMSAVALAF  350 (408)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~---~~~~~~lg~  350 (408)
                      .++..+..+....          .+.+.+.+....+..+++.+...|. .+++.|..|+++|++..+.   .+...++|.
T Consensus        92 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~  161 (524)
T 2xut_A           92 SLIYCVGHAFLAI----------FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS  161 (524)
T ss_dssp             HHHHHHHHHHHHH----------TSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----------hcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence            7776665544221          1113334455566677777766677 8999999999999766555   889999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 015348          351 IVSGYLGVALASYTG  365 (408)
Q Consensus       351 ~ig~~~~g~l~~~~g  365 (408)
                      .++|.+++.+.+..|
T Consensus       162 ~~g~~~~~~l~~~~g  176 (524)
T 2xut_A          162 FFASLSMPLLLKNFG  176 (524)
T ss_dssp             HHHHHTSTHHHHTSC
T ss_pred             HHHHHHHHHHhcccc
Confidence            999999999988655

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.21  E-value=1.6e-11  Score=113.19  Aligned_cols=156  Identities=8%  Similarity=0.087  Sum_probs=117.7

Q ss_pred             hhhhhccCCC---HHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHH
Q 015348            5 FFLKDSLNVD---PSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTM   80 (408)
Q Consensus         5 ~~l~~~l~~s---~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (408)
                      .|+++.++.+   ..+.+...++..+..++ .++.|+++||     +|||+.+..+..+.+++.+...+.+    +.+.+
T Consensus       245 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~~~~l~~~~~~~~~~~~~~~~~~----~~~~~  315 (417)
T 2cfq_A          245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-----IGGKNALLLAGTIMSVRIIGSSFAT----SALEV  315 (417)
T ss_dssp             HHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHTTCC----SHHHH
T ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcHHHHHHHHHHHHHHHHHHHHHhc----cHHHH
Confidence            4555555532   34556666665544444 7889999999     9999999888888777766666655    67777


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHH-HHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 015348           81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSF-VWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFG  159 (408)
Q Consensus        81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~  159 (408)
                      ++..++.+++.+...+...+++.|..|++         .|++.++. .+....+|..++|.++|.+.+..|++..|.+.+
T Consensus       316 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~---------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~  386 (417)
T 2cfq_A          316 VILKTLHMFEVPFLLVGCFKYITSQFEVR---------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHSCHH---------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence            77777888887777666678899998875         48888887 477888999999999999999889999999988


Q ss_pred             HHHHHHHHHhhh-ccccccc
Q 015348          160 LLVVLQFFITIA-VRESALK  178 (408)
Q Consensus       160 ~~~~~~~~~~~~-~~e~~~~  178 (408)
                      ++.++..+..++ .||+++.
T Consensus       387 ~~~l~~~~~~~~~~~~~~~~  406 (417)
T 2cfq_A          387 LVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHHHHHHTTSSCCSCTT
T ss_pred             HHHHHHHHHHHhhhcCCCch
Confidence            887777665444 6665443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.96  E-value=2.2e-09  Score=101.05  Aligned_cols=163  Identities=12%  Similarity=0.136  Sum_probs=113.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccc-------cccCcCceEeehhhh
Q 015348          236 RSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVY-------REMGVPDSLYVLIFS  308 (408)
Q Consensus       236 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  308 (408)
                      +....|++.+...++.++|.++.|+++||+|||+.+..+.++..+..+...+......       .......+...+++.
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~  132 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY  132 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence            3456778888889999999999999999999999999888877776554332100000       000122344456667


Q ss_pred             HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHhhhhh
Q 015348          309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTIL  387 (408)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  387 (408)
                      -+..|++.+...+. .+++.|..|+++|++..++.+.....|..+++.++..+.+..+..............+..+..++
T Consensus       133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (491)
T 4gc0_A          133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL  212 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence            77788887777777 89999999999999999999999999999998888877766554433333333344444444444


Q ss_pred             hhhhhhccCCC
Q 015348          388 PLYWSYFMPDG  398 (408)
Q Consensus       388 ~~~~~~~~~~~  398 (408)
                      .+...+..||.
T Consensus       213 ~~~~~~~~peS  223 (491)
T 4gc0_A          213 FLMLLYTVPES  223 (491)
T ss_dssp             HHHHGGGSCCC
T ss_pred             hhhhhhcCCCC
Confidence            44555667764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.95
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.31
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.25

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-32  Score=254.57  Aligned_cols=340  Identities=12%  Similarity=0.071  Sum_probs=251.5

Q ss_pred             hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 015348            6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFL   84 (408)
Q Consensus         6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      ++ +|+|+|++|+|++.+...+++.+ ++++|+++||     +|||+.+..+.++.+++.+++++.+....+++.+++.|
T Consensus        50 ~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-----~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (447)
T d1pw4a_          50 YL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-----SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL  123 (447)
T ss_dssp             HT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred             HH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHH
Confidence            45 46899999999999999988877 9999999999     99999999999999999888877653333788899999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-CChhhHHHHHHHHHH
Q 015348           85 LLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR-FSPPSMFLFFGLLVV  163 (408)
Q Consensus        85 ~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~-~g~~~~f~i~~~~~~  163 (408)
                      ++.|++.+...+...+++.|+.|+++         |++++++.+.+.++|..+++.+++.+.+. .+||+.|++.+.+.+
T Consensus       124 ~~~g~~~~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~  194 (447)
T d1pw4a_         124 FLCGWFQGMGWPPCGRTMVHWWSQKE---------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAI  194 (447)
T ss_dssp             HHHHHHHHHTHHHHHHHHHTTCTTTH---------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHH
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHhhc---------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHH
Confidence            99999999999999999999998764         99999999999999999999998887665 479999999888877


Q ss_pred             HHHHHhhh-cccccccCCCCC---cc----hhH----H----HHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEE
Q 015348          164 LQFFITIA-VRESALKLPKSQ---SN----VGI----R----AQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFF  227 (408)
Q Consensus       164 ~~~~~~~~-~~e~~~~~~~~~---~~----~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (408)
                      +..+..++ .+|++++....+   .+    ++.    +    ......++.+++|.++......++..........+.+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (447)
T d1pw4a_         195 LVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT  274 (447)
T ss_dssp             HHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhh
Confidence            76655444 555443221100   00    000    0    00112345578888887777666655555555566677


Q ss_pred             EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348          228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF  307 (408)
Q Consensus       228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      |..+..+.+..+.+.......++.+++.++.+++.||.++++....................      .......+....
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  348 (447)
T d1pw4a_         275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW------MNPAGNPTVDMI  348 (447)
T ss_dssp             HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT------SCCTTCHHHHHH
T ss_pred             hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHH------hcccccHHHHHH
Confidence            77788899999999999999999999999999999999877654444333332222211100      111122223344


Q ss_pred             hHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCC
Q 015348          308 SSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALA-FIVSGYLGVALASYTGV  366 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg-~~ig~~~~g~l~~~~g~  366 (408)
                      ..+..+++.....+. ..+..|..|++.+|++.|+.+...+++ ..++|.+.|.+.|..|.
T Consensus       349 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~  409 (447)
T d1pw4a_         349 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW  409 (447)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            444455555444455 788899999999999999999998875 56789999999998875

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.1e-28  Score=225.37  Aligned_cols=337  Identities=13%  Similarity=0.084  Sum_probs=215.3

Q ss_pred             hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHH-
Q 015348            3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTM-   80 (408)
Q Consensus         3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (408)
                      ++.|+++++|+|++|+|++.++..++..+ +|++|+++||     +|||+.++++.....++..+.....    +.... 
T Consensus        30 l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-----~grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~  100 (417)
T d1pv7a_          30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-----LGLRKYLLWIITGMLVMFAPFFIFI----FGPLLQ  100 (417)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-----HTTCTHHHHHHHHHHHTHHHHHHHT----HHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHHhh----hhhhHH
Confidence            45678899999999999999999988777 9999999999     9999999999888888888877766    44333 


Q ss_pred             ---HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHH
Q 015348           81 ---SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLF  157 (408)
Q Consensus        81 ---~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i  157 (408)
                         +..+.+.+.+.+...........+..++++  +     ++.+..+........+..+++.+++.+.+. +|+..+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~  172 (417)
T d1pv7a_         101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS--R-----RSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWL  172 (417)
T ss_dssp             TTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH--H-----HHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHH
T ss_pred             HHHHHHHHHhhhcccccccchhhcccccccchh--h-----hhHHHHHHHhhhhccccccccccccccccc-cccccccc
Confidence               333333333333333333333333333222  1     355556677778889999999999988775 55555555


Q ss_pred             HHHHHHHH-HHHhhhcccccccCCCCCcch--hHHHHHHHHHHhcccchhHHHHHHHHhhhccccc---ccceeEEEEEe
Q 015348          158 FGLLVVLQ-FFITIAVRESALKLPKSQSNV--GIRAQLSELSAALRKPEIMYSVAWFAASYSIIPV---LTGTMFFYQTQ  231 (408)
Q Consensus       158 ~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  231 (408)
                      ......+. .+..+..+|++.+++++++++  +.++..+...+..+++..+...............   .......+..+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (417)
T d1pv7a_         173 GSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA  252 (417)
T ss_dssp             HHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred             hhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHHHHhhhcccccccccccc
Confidence            55444444 444444665544333221110  0011112222334444444333322221111111   11111111222


Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHH
Q 015348          232 NLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLL  311 (408)
Q Consensus       232 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                      ..+.+....+.......++..++..+.+++.||.++++.+..+..+..+..+...           ...+.+......+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l  321 (417)
T d1pv7a_         253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-----------FATSALEVVILKTL  321 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-----------TCCCHHHHHHHHHH
T ss_pred             ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccc-----------cccccchhhHHHHH
Confidence            2344566677778888889999999999999999999988887777666554422           12233344455556


Q ss_pred             HHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Q 015348          312 EVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVM-SAVALAFIVSGYLGVALASYTGVT  367 (408)
Q Consensus       312 ~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~-~~~~lg~~ig~~~~g~l~~~~g~~  367 (408)
                      .+++.....|. .++++|..|++.||+++|+.. ....+|..++|.+.|++.|..|..
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~  379 (417)
T d1pv7a_         322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ  379 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence            66666555566 889999999999999999865 456799999999999999998753

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.9e-11  Score=111.26  Aligned_cols=127  Identities=15%  Similarity=0.001  Sum_probs=101.8

Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHH
Q 015348          232 NLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLL  311 (408)
Q Consensus       232 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                      +.|+|..+.|++.+...++..++.++.|++.||+|+|+.+..+.++..+..++......       .......+....+.
T Consensus        53 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  125 (447)
T d1pw4a_          53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW-------ATSSIAVMFVLLFL  125 (447)
T ss_dssp             SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHH-------HHSSSSHHHHHHHH
T ss_pred             HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccch-------hhhhHHHHHHHHHH
Confidence            47999999999999999999999999999999999999998888777766544322100       11223345555666


Q ss_pred             HHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348          312 EVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG  365 (408)
Q Consensus       312 ~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g  365 (408)
                      .+++.+...|. ..++.|..|+++|++++|+.+....+|..+++.+++.+.+..+
T Consensus       126 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  180 (447)
T d1pw4a_         126 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN  180 (447)
T ss_dssp             HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred             HHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh
Confidence            77776666666 8899999999999999999999999999999999998887664

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.2e-11  Score=110.94  Aligned_cols=146  Identities=8%  Similarity=0.097  Sum_probs=121.8

Q ss_pred             CCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHH
Q 015348           13 VDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLLLSNLGA   91 (408)
Q Consensus        13 ~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   91 (408)
                      .+..+.+...+...+.... .++.|++.||     .+||+.+..+..+..++.+...+.+    +.+..++..++.|++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~  326 (417)
T d1pv7a_         256 QGTRVFGYVTTMGELLNASIMFFAPLIINR-----IGGKNALLLAGTIMSVRIIGSSFAT----SALEVVILKTLHMFEV  326 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHTCC----CHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccccccccccccchhhhhhhhcc-----cccccchhhhHHHHHHhhhcccccc----ccchhhHHHHHHHHHH
Confidence            3445566666665555444 7889999999     9999999999999999999888888    8999999999999999


Q ss_pred             HHHHhhHHHHHHhhccCCCccchhhccCcchhHHHH-HHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhh
Q 015348           92 SIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFV-WMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQFFITI  170 (408)
Q Consensus        92 ~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  170 (408)
                      +...+...+++.|..|++.         |++..+.. +....+|..++|.++|++.+..|++..|++.+++.++..++..
T Consensus       327 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  397 (417)
T d1pv7a_         327 PFLLVGCFKYITSQFEVRF---------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHHHHHHHHHHHSCGGG---------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999764         89988875 4567799999999999999999999999999888877766555


Q ss_pred             h-ccccc
Q 015348          171 A-VRESA  176 (408)
Q Consensus       171 ~-~~e~~  176 (408)
                      + +++++
T Consensus       398 ~~l~~~~  404 (417)
T d1pv7a_         398 FTLSGPG  404 (417)
T ss_dssp             HHSCCSS
T ss_pred             HhhcCCC
Confidence            4 55543