Citrus Sinensis ID: 015363

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MDNGGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTLYE
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEEEccccccccccccccEEEEEEcccccEEEEEcccccEEEEEEcccccccccccccEEEEEEcccccccEEEEEEEcccccccccccEEEccEEEEEEEEEcccccEEEEccccccEEEEEcccccEEEEEcccccccccccccccEEccccccccEEEccccccccccccccccccccccccccccccEEEEccccEEEEEEEEEEcccccccEEEEEEcccccEEEEEEcccEEEEEccccccEEEEEEccccccccccccEEEEEEEcccccEEEEEEcccEEEEEEcccccccccccccEEEcccccccccccccEEcEEEEEEcccccEEEEEcccEEEEEEcccccccEEEEEcccccccEEEEccccEEEEEcccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEEccccccccccccccEEEEEEEcccccEEEEcccccEEEEEEEcccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHEEEcccccccEEEEEccccEEEEEEEEccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccEEEcccccEEEEcccEEEEcccHEEEEEEEEcccccEEEEccccEEEEEccccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEcccccEEHHHHHHHHHHHHHcHHcccccccccccHHHHHHHcHcccEEcccccEEEEEcEEEEEEEEEccccccEEEEcHHHHHHHHHHHHHHHHcccccHHHHccc
Coil and Loop (DISEMBL)
mdngggsseaaaqpLEWKFSqvfgertageevqevDIISAIefdksgdhlatgdrggrvvlfertdtrdnggqrrdLEMMDYsmsrhpefryktefqshepefdylKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDwnvhpekaagngpifgshvsaipksymanggcgernfgcasndssfppggvsslrlpvvvtsqetnLVAGCRRIYAHAHDyhinsisnnsdgetfisaDDLRINLWNleisnqsfnivdvkpanmedltevitsaefhpthcnmlayssskgsiRLIDMRQSALCDTHSKlfeeqeapgtrsFFTEIIASISDIKFARNGRHILSRDYMTLKLWDinmdsgpvatfqvhehlrpkvmhssknyfmgldnihtlye
Flexible Loop (DISEMBL)
mdngggsseaaaqpleWKFSQVFGERTAGEEVQEVDIISAIefdksgdhlatgdrggrvvlfertdtrdnggqrrdleMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHpekaagngpifgSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFeeqeapgtrsFFTEIIASISdikfarngrhILSRDYMTLKLWDINMDSGPVATFQVHEHlrpkvmhssknyfmgldniHTLYE
Low Complexity Region (SEG)
MDNGGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIklwkvqekkvkkvFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTLYE
Disordered region (IsUnstruct)
***************EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLF***************************************EFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA**********VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE****PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTL**
Disordered Region (DISOPRED)
****************WKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTLYE
Disordered Region (DISEMBL)
**********AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTLYE
Disordered Region (DISPRO)
*************PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD******************SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNV****************************************SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTLYE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNGGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTLYE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q39247	501	Serine/threonine protein	yes	no	0.919	0.748	0.789	0.0
Q38821	513	Serine/threonine protein	no	no	0.943	0.750	0.772	1e-175
Q0E2P1	525	Serine/threonine protein	yes	no	0.911	0.708	0.788	1e-174
A2X2K3	525	Serine/threonine protein	N/A	no	0.911	0.708	0.788	1e-174
Q5Z8Z7	581	Serine/threonine protein	no	no	0.936	0.657	0.755	1e-169
Q12702	463	Protein phosphatase PP2A	yes	no	0.791	0.697	0.550	1e-111
P53031	508	Protein phosphatase PP2A	N/A	no	0.799	0.641	0.522	1e-106
Q6DIY3	447	Serine/threonine-protein	yes	no	0.806	0.736	0.520	1e-105
Q00362	526	Protein phosphatase PP2A	yes	no	0.843	0.653	0.518	1e-105
Q5ZIY5	451	Serine/threonine-protein	yes	no	0.794	0.718	0.522	1e-104

>sp|Q39247|2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1

 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/389 (78%), Positives = 337/389 (86%), Gaps = 14/389 (3%)

Query: 3   NGGGSSEAAAQP--LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
           NGG  +  +  P  LEW+FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV
Sbjct: 2   NGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 61

Query: 61  LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
           LFERTDT+D+GG R+DLE  DY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62  LFERTDTKDHGGSRKDLEQTDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120

Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
           CQ AN AL+LLSTNDKTIK WKVQEKK+KK+ + N+ P           S  S IP   +
Sbjct: 121 CQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDP-----------SESSNIPPQLV 169

Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS 240
            NG   ++     S D SFPPGG+ SLRLPVVVTSQETNLVA CRR+YAHAHDYHINSIS
Sbjct: 170 TNGLPADKGHDYLSKDFSFPPGGIPSLRLPVVVTSQETNLVARCRRVYAHAHDYHINSIS 229

Query: 241 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300
           N+SDGETFISADDLR+NLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLAY
Sbjct: 230 NSSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAY 289

Query: 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360
           SSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKF+++GR+ILSRD
Sbjct: 290 SSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSRD 349

Query: 361 YMTLKLWDINMDSGPVATFQVHEHLRPKV 389
           YMTLKLWDINMDSGPVA++QVHEHLRP++
Sbjct: 350 YMTLKLWDINMDSGPVASYQVHEHLRPRL 378

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38821|2ABA_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2

 Score =  616 bits (1588), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 302/391 (77%), Positives = 335/391 (85%), Gaps = 6/391 (1%)

Query: 3   NGGGSSEAAAQ----PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 58
           NGG    AA+     PLEW+FSQVFGER+AGEEVQEVDIISAIEFD SG+HLATGDRGGR
Sbjct: 2   NGGDEVVAASADPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGR 61

Query: 59  VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118
           VVLFERTDT ++ G RR+LE  DY + RHPEFRYKTEFQSH+PEFDYLKSLEIEEKINKI
Sbjct: 62  VVLFERTDTNNSSGTRRELEEADYPL-RHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKI 120

Query: 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178
           RWCQ+AN AL+LLSTNDKTIK WKVQ+KK+KK+ D N  P +  GNG +  S  S I  S
Sbjct: 121 RWCQTANGALFLLSTNDKTIKFWKVQDKKIKKICDMNSDPSRTVGNGTVASSSNSNITNS 180

Query: 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS 238
            + NGG  E N     ND S P GG+SSLRLPVVVTS E++ VA CRR+YAHAHDYHINS
Sbjct: 181 CLVNGGVSEVN-NSLCNDFSLPAGGISSLRLPVVVTSHESSPVARCRRVYAHAHDYHINS 239

Query: 239 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 298
           ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA MEDL+EVITSAEFHPTHCNML
Sbjct: 240 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNML 299

Query: 299 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358
           AYSSSKGSIRLID+RQSALCD+HSKLFEE E  G +SFFTEIIAS+SDIKFA+ GR++LS
Sbjct: 300 AYSSSKGSIRLIDLRQSALCDSHSKLFEEPEQAGPKSFFTEIIASVSDIKFAKEGRYLLS 359

Query: 359 RDYMTLKLWDINMDSGPVATFQVHEHLRPKV 389
           RDYMTLKLWDINMD+GPVATFQVHE+L+PK+
Sbjct: 360 RDYMTLKLWDINMDAGPVATFQVHEYLKPKL 390

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0E2P1|2ABB_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1

 Score =  610 bits (1574), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 295/374 (78%), Positives = 334/374 (89%), Gaps = 2/374 (0%)

Query: 16  EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
           EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD+RD+   R 
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSAS-RS 89

Query: 76  DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
           +LE  DY ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQ+AN+AL+LLSTND
Sbjct: 90  ELERQDYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTND 149

Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
           KTIK WKVQE+KVK++   N++  +++GNG    S  S+  ++ + NGGC E+ +   +N
Sbjct: 150 KTIKYWKVQERKVKRISVMNLNTSQSSGNGTTSSSSSSSS-RAILPNGGCSEKLYNFPNN 208

Query: 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 255
           D  FPPGG +SLRLPVVVT Q+ NLV  CRR+Y+HAHDYHINSISNNSDGET+ISADDLR
Sbjct: 209 DLLFPPGGCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYISADDLR 268

Query: 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315
           INLWNLEISNQSFNIVDVKPANMEDLTEVIT AEFHPTHCN LAYSSSKGSIRLID+RQS
Sbjct: 269 INLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQS 328

Query: 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 375
           ALCD H+KLFEE EAPG+RSFFTEIIAS+SDIKFAR+GRHILSRDYMTLKLWDINMDSGP
Sbjct: 329 ALCDNHAKLFEEHEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWDINMDSGP 388

Query: 376 VATFQVHEHLRPKV 389
           VATFQVHE+LRPK+
Sbjct: 389 VATFQVHEYLRPKL 402

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X2K3|2ABB_ORYSI Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2

 Score =  610 bits (1574), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 295/374 (78%), Positives = 334/374 (89%), Gaps = 2/374 (0%)

Query: 16  EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
           EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD+RD+   R 
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSAS-RS 89

Query: 76  DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
           +LE  DY ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQ+AN+AL+LLSTND
Sbjct: 90  ELERQDYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTND 149

Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
           KTIK WKVQE+KVK++   N++  +++GNG    S  S+  ++ + NGGC E+ +   +N
Sbjct: 150 KTIKYWKVQERKVKRISVMNLNTSQSSGNGTTSSSSSSSS-RAILPNGGCSEKLYNFPNN 208

Query: 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 255
           D  FPPGG +SLRLPVVVT Q+ NLV  CRR+Y+HAHDYHINSISNNSDGET+ISADDLR
Sbjct: 209 DLLFPPGGCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYISADDLR 268

Query: 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315
           INLWNLEISNQSFNIVDVKPANMEDLTEVIT AEFHPTHCN LAYSSSKGSIRLID+RQS
Sbjct: 269 INLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQS 328

Query: 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 375
           ALCD H+KLFEE EAPG+RSFFTEIIAS+SDIKFAR+GRHILSRDYMTLKLWDINMDSGP
Sbjct: 329 ALCDNHAKLFEEHEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWDINMDSGP 388

Query: 376 VATFQVHEHLRPKV 389
           VATFQVHE+LRPK+
Sbjct: 389 VATFQVHEYLRPKL 402

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5Z8Z7|2ABA_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2

 Score =  595 bits (1533), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 293/388 (75%), Positives = 329/388 (84%), Gaps = 6/388 (1%)

Query: 4   GGGSSEAA-AQP-LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVL 61
           G GSS A    P +EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVL
Sbjct: 16  GAGSSSAQQGHPTMEWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVL 75

Query: 62  FERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 121
           FERTD RDN   RR++E  D  ++RHPEFRYK+EFQSHEPEFDYLKSLEIEEKINKIRWC
Sbjct: 76  FERTDARDNAS-RREMERQDAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWC 134

Query: 122 QSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181
           Q+AN++L LLSTNDKTIK WKVQEKKVK+V   N+             S  ++  +  + 
Sbjct: 135 QTANNSLSLLSTNDKTIKYWKVQEKKVKQVSVMNLDSRSVGTG--TSSSASTSSSRGLLP 192

Query: 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN 241
           NGGC +++    ++D  FPPGG  SLRLPVVV SQ+ NLVA CRR+YAHAHDYHINSIS 
Sbjct: 193 NGGCSDKS-SFLNSDILFPPGGYPSLRLPVVVASQDVNLVARCRRVYAHAHDYHINSIST 251

Query: 242 NSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 301
           NSDGET+ISADDLRINLWNLEI+NQSFNIVDVKP NMEDLTEVIT AEFHPTHCN LAYS
Sbjct: 252 NSDGETYISADDLRINLWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYS 311

Query: 302 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361
           SSKGSIRLID+RQSALCD HSK+FEE EAPG+RSFFTEIIASISDIKF+R+GR+ILSRDY
Sbjct: 312 SSKGSIRLIDLRQSALCDNHSKIFEEHEAPGSRSFFTEIIASISDIKFSRDGRYILSRDY 371

Query: 362 MTLKLWDINMDSGPVATFQVHEHLRPKV 389
           MTLKLWD+NMDSGPV+TFQVHEHLRPK+
Sbjct: 372 MTLKLWDLNMDSGPVSTFQVHEHLRPKL 399

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q12702|2ABA_SCHPO Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab1 PE=1 SV=2

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/374 (55%), Positives = 261/374 (69%), Gaps = 51/374 (13%)

Query: 16  EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
           +WKF+Q FG++   E++ E DIISA+EFD +GD+LATGD+GGRVVLFER  ++       
Sbjct: 10  QWKFAQCFGDKGDVEDITEADIISAVEFDHTGDYLATGDKGGRVVLFERNHSK------- 62

Query: 76  DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
                     +  E+++ TEFQSHEPEFDYLKSLEIEEKINKIRWC+  N A +LLSTND
Sbjct: 63  ----------KGCEYKFFTEFQSHEPEFDYLKSLEIEEKINKIRWCKRTNRAHFLLSTND 112

Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
           KTIKLWK+ EK +K V + N+     + + P+ G                          
Sbjct: 113 KTIKLWKLYEKNLKVVAENNL---SDSFHSPMQG-------------------------- 143

Query: 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 255
               P    S LRLP +    +  + A  RR+YA+AH YHINSIS NSD ET+ISADDLR
Sbjct: 144 ----PLTTPSQLRLPRL-NHHDMIIAAYPRRVYANAHAYHINSISVNSDAETYISADDLR 198

Query: 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315
           INLWNL IS+ SFNIVD+KP NME+LTEVITSAEFHP +CN L YSSSKG+I+L+D+RQS
Sbjct: 199 INLWNLSISDHSFNIVDIKPENMEELTEVITSAEFHPINCNHLMYSSSKGNIKLLDLRQS 258

Query: 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 375
           ALCD   KLFE+QE   ++SFF+EII+SISD+KF++NGR+ILSRDY+TLK+WD+NM+  P
Sbjct: 259 ALCDNPCKLFEDQEDQDSKSFFSEIISSISDVKFSQNGRYILSRDYLTLKIWDVNMEKAP 318

Query: 376 VATFQVHEHLRPKV 389
           V T  +H+ LR K+
Sbjct: 319 VKTIPLHDVLRSKL 332

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53031|2ABA_CANTR Protein phosphatase PP2A regulatory subunit B OS=Candida tropicalis GN=CDC55 PE=3 SV=1

 Score =  387 bits (993), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/377 (52%), Positives = 262/377 (69%), Gaps = 51/377 (13%)

Query: 19  FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLE 78
           FSQ FG++   E + E DIIS +EFD +GD LATGD+GGRVVLFER  ++          
Sbjct: 5   FSQCFGDKGDIENITEADIISTVEFDHTGDFLATGDKGGRVVLFERNQSK---------- 54

Query: 79  MMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTI 138
                  +  E+++ TEFQSH+ EFDYLKSLEIEEKINKI+W +SAN +L LLSTNDKTI
Sbjct: 55  -----KKQSCEYKFFTEFQSHDAEFDYLKSLEIEEKINKIKWLKSANDSLCLLSTNDKTI 109

Query: 139 KLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198
           KLWK+QE+++K V + N+       NG      ++ +P S +                  
Sbjct: 110 KLWKIQERQIKLVSENNL-------NG------LNHLPSSNI------------------ 138

Query: 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINL 258
               G+ SL+LP +    +  + A  ++IYA+AH YHINSIS NSD ET++SADDLRINL
Sbjct: 139 ----GIESLKLPQLQLHDKL-ISAQPKKIYANAHAYHINSISVNSDQETYLSADDLRINL 193

Query: 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318
           WNL I++QSFNIVD+KPANME+LTEVITSAEFHP  CN+  YSSSKG+I+L DMR ++LC
Sbjct: 194 WNLGIADQSFNIVDIKPANMEELTEVITSAEFHPLQCNLFMYSSSKGTIKLSDMRSNSLC 253

Query: 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVAT 378
           D+H+K+FEE   P + +FFTEI +SISD+KF+ +GR+I SRDYMT+K+WD+ M++ P+ T
Sbjct: 254 DSHAKIFEEYLDPSSHNFFTEITSSISDVKFSHDGRYIASRDYMTVKIWDLAMENKPIKT 313

Query: 379 FQVHEHLRPKVMHSSKN 395
             VHEHLR ++  + +N
Sbjct: 314 IDVHEHLRERLCDTYEN 330

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Candida tropicalis (taxid: 5482)

>sp|Q6DIY3|2ABD_XENTR Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus tropicalis GN=ppp2r2d PE=2 SV=1

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 259/386 (67%), Gaps = 57/386 (14%)

Query: 4   GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63
           GGG+        +W FSQV G     E+V E DIIS +EF+ SGD LATGD+GGRVV+F+
Sbjct: 5   GGGND------FQWCFSQVKG--AIDEDVAEADIISTVEFNCSGDLLATGDKGGRVVIFQ 56

Query: 64  RTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123
           R     +    R             E+   + FQSHEPEFDYLKSLEIEEKINKIRW   
Sbjct: 57  REQENKSRPHSRG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104

Query: 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183
            N+A +LLSTNDKTIKLWK+ E+  K+V  +N+  +      P                 
Sbjct: 105 QNAAHFLLSTNDKTIKLWKISERD-KRVEGYNLKDDDGRLRDPF---------------- 147

Query: 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243
                               ++SLR+P++    +  + A  RRI+A+AH YHINSIS NS
Sbjct: 148 -------------------RITSLRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNS 187

Query: 244 DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303
           D ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+  YSSS
Sbjct: 188 DHETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSS 247

Query: 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT 363
           KG+IRL DMR SALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY++
Sbjct: 248 KGTIRLCDMRDSALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSNSGRYMMTRDYLS 307

Query: 364 LKLWDINMDSGPVATFQVHEHLRPKV 389
           +K+WD+NM+S PV T+QVHE+LR K+
Sbjct: 308 VKVWDLNMESRPVETYQVHEYLRSKL 333

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Xenopus tropicalis (taxid: 8364)

>sp|Q00362|2ABA_YEAST Protein phosphatase PP2A regulatory subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC55 PE=1 SV=2

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/386 (51%), Positives = 262/386 (67%), Gaps = 42/386 (10%)

Query: 11  AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDN 70
           A    ++KFSQ FG++ A   V E D+I+A+EFD +G++LATGD+GGRVVLFER++    
Sbjct: 2   AQNNFDFKFSQCFGDK-ADIVVTEADLITAVEFDYTGNYLATGDKGGRVVLFERSN---- 56

Query: 71  GGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYL 130
                         SRH E+++ TEFQSH+ EFDYLKSLEIEEKIN+I+W +    + +L
Sbjct: 57  --------------SRHCEYKFLTEFQSHDAEFDYLKSLEIEEKINEIKWLRPTQRSHFL 102

Query: 131 LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190
           LSTNDKTIKLWKV EK +K V   N+        G  F       P ++ + GG      
Sbjct: 103 LSTNDKTIKLWKVYEKNIKLVSQNNL------TEGVTFAK--KGKPDNHNSRGG------ 148

Query: 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGC-RRIYAHAHDYHINSISNNSDGETFI 249
                 S      + SL+LP +  SQ   ++A   +RIY++AH YHINSIS NSD ETF+
Sbjct: 149 ------SVRAVLSLQSLKLPQL--SQHDKIIAATPKRIYSNAHTYHINSISLNSDQETFL 200

Query: 250 SADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309
           SADDLRINLWNL+I +QSFNIVD+KP NME+LTEVITSAEFHP  CN+  YSSSKG+I+L
Sbjct: 201 SADDLRINLWNLDIPDQSFNIVDIKPTNMEELTEVITSAEFHPQECNLFMYSSSKGTIKL 260

Query: 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 369
            DMRQ++LCD  +K FEE   P   +FFTEI +SISDIKF+ NGR+I SRDY+T+K+WD+
Sbjct: 261 CDMRQNSLCDNKTKTFEEYLDPINHNFFTEITSSISDIKFSPNGRYIASRDYLTVKIWDV 320

Query: 370 NMDSGPVATFQVHEHLRPKVMHSSKN 395
           NMD+ P+ T  +HE L+ ++  + +N
Sbjct: 321 NMDNKPLKTINIHEQLKERLSDTYEN 346

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5ZIY5|2ABD_CHICK Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Gallus gallus GN=PPP2R2D PE=2 SV=1

 Score =  380 bits (975), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/375 (52%), Positives = 254/375 (67%), Gaps = 51/375 (13%)

Query: 15  LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
            +W FSQV G     E+V E DIIS +EF+ SGD LATGD+GGRVV+F+R     +    
Sbjct: 14  FQWCFSQVQG--AVDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQREQENKSRPHS 71

Query: 75  RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
           R             E+   + FQSHEPEFDYLKSLEIEEKINKIRW    N+A +LLSTN
Sbjct: 72  RG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTN 119

Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
           DKTIKLWK+ E+  K+   +N+  E      P                            
Sbjct: 120 DKTIKLWKISERD-KRAEGYNLKDEDGRLRDPF--------------------------- 151

Query: 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254
                    +++LR+P++    +  + A  RRI+A+AH YHINSIS NSD ET++SADDL
Sbjct: 152 --------KITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDL 202

Query: 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314
           RINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+  YSSSKG+IRL DMR 
Sbjct: 203 RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRS 262

Query: 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 374
           SALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ 
Sbjct: 263 SALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENR 322

Query: 375 PVATFQVHEHLRPKV 389
           PV T+QVHE+LR K+
Sbjct: 323 PVETYQVHEYLRSKL 337

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
224088860	521	predicted protein [Populus trichocarpa]	0.914	0.715	0.853	0.0
224128562	512	predicted protein [Populus trichocarpa]	0.946	0.753	0.826	0.0
224142870	517	predicted protein [Populus trichocarpa]	0.946	0.746	0.819	0.0
225442335	512	PREDICTED: serine/threonine protein phos	0.914	0.728	0.845	0.0
356550460	514	PREDICTED: serine/threonine protein phos	0.943	0.749	0.818	0.0
356556686	514	PREDICTED: serine/threonine protein phos	0.914	0.725	0.84	0.0
297738699	508	unnamed protein product [Vitis vinifera]	0.938	0.753	0.796	0.0
11094369	515	Ser/Thr specific protein phosphatase 2A	0.946	0.749	0.797	0.0
147810182	507	hypothetical protein VITISV_029693 [Viti	0.936	0.753	0.794	0.0
225444987	507	PREDICTED: serine/threonine protein phos	0.936	0.753	0.794	0.0

>gi|224088860|ref|XP_002308570.1| predicted protein [Populus trichocarpa] gi|222854546|gb|EEE92093.1| predicted protein [Populus trichocarpa]

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/375 (85%), Positives = 346/375 (92%), Gaps = 2/375 (0%)

Query: 15  LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
           LEWKF+QVFGERTAGEEVQEVDIISAIEFD++GDHLATGDRGGRVVLFERTDTRD+GG R
Sbjct: 26  LEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRGGRVVLFERTDTRDHGGNR 85

Query: 75  RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
           RDLE MD+ ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQSAN AL+LLSTN
Sbjct: 86  RDLERMDFPINRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQSANGALFLLSTN 145

Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
           DKTIK WKVQEKKVKK+ D NV P KAAGNGP+ G  +S   K Y ANGGC ++  G  S
Sbjct: 146 DKTIKFWKVQEKKVKKICDMNVDPAKAAGNGPLVGPSISTSSKPYTANGGCLDKPLGL-S 204

Query: 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254
           ND SFPPGGVSSL LPV+ TS ET+LV  CRRIYAHAHDYHINSISNNSDGETFISADDL
Sbjct: 205 NDFSFPPGGVSSLHLPVL-TSIETSLVPRCRRIYAHAHDYHINSISNNSDGETFISADDL 263

Query: 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314
           RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS+GSIRL+DMRQ
Sbjct: 264 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSRGSIRLVDMRQ 323

Query: 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 374
           SALCD+HSKLFEEQE PG+RSFFTEIIASISDIKFA++GR+ILSRDYMTLKLWDINMDSG
Sbjct: 324 SALCDSHSKLFEEQEVPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSG 383

Query: 375 PVATFQVHEHLRPKV 389
           PV+TFQVHE+LRPK+
Sbjct: 384 PVSTFQVHEYLRPKL 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128562|ref|XP_002329034.1| predicted protein [Populus trichocarpa] gi|222839705|gb|EEE78028.1| predicted protein [Populus trichocarpa]

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/392 (82%), Positives = 350/392 (89%), Gaps = 6/392 (1%)

Query: 1   MDNGGGSSEAAA---QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGG 57
           M+ G   +EA A   QPLEWKFSQVFGERTAGEEVQEVDIISAIEFD+SGDHLATGDRGG
Sbjct: 1   MNGGDEVAEAPASPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDRSGDHLATGDRGG 60

Query: 58  RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117
           RVVLFERTDT+D+GG RRDLE M Y +SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK
Sbjct: 61  RVVLFERTDTKDHGGSRRDLERMGYPISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 120

Query: 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177
           IRWCQ+AN AL+LLSTNDKTIK WKVQEKKVKK+ + NV P KA GNG +  S  S+I K
Sbjct: 121 IRWCQTANGALFLLSTNDKTIKYWKVQEKKVKKISEMNVDPSKAVGNGGVASSSNSSIGK 180

Query: 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHIN 237
            Y+ANGG  +++    SND S  PGG  SLRLPVV TS ET+L+A CRR+YAHAHDYHIN
Sbjct: 181 QYLANGG--DKSHNLPSNDLSISPGGFPSLRLPVV-TSNETSLMARCRRVYAHAHDYHIN 237

Query: 238 SISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNM 297
           SISNNSDGETFISADDLRINLWNLEISNQSFNI DVKPANMEDLTEVITSAEFHP+HCNM
Sbjct: 238 SISNNSDGETFISADDLRINLWNLEISNQSFNICDVKPANMEDLTEVITSAEFHPSHCNM 297

Query: 298 LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357
           LAYSSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKFAR+GRHIL
Sbjct: 298 LAYSSSKGSIRLIDMRQSALCDSHAKLFEEPEAPGSRSFFTEIIASISDIKFARDGRHIL 357

Query: 358 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKV 389
           SRDYMTLKLWDINMDSGPVATFQVHE+LRPK+
Sbjct: 358 SRDYMTLKLWDINMDSGPVATFQVHEYLRPKL 389

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142870|ref|XP_002324758.1| predicted protein [Populus trichocarpa] gi|222866192|gb|EEF03323.1| predicted protein [Populus trichocarpa]

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/394 (81%), Positives = 348/394 (88%), Gaps = 8/394 (2%)

Query: 3   NGGGSSEAAAQP------LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRG 56
           NGGGS EAA         LEWKF+QVFGERTAGEEVQEVDIISAIEFD++GDHLATGDRG
Sbjct: 2   NGGGSEEAAEAVAAAPVPLEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRG 61

Query: 57  GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116
           GRVVLFERTD RD+GG RRDLE MD+ + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN
Sbjct: 62  GRVVLFERTDKRDHGGNRRDLERMDFPIIRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121

Query: 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176
           KIRWCQ+AN AL+LLSTNDKTIK WKV EKKVKK+ D NV P KAAGNGP+ G  +    
Sbjct: 122 KIRWCQAANGALFLLSTNDKTIKFWKVHEKKVKKICDMNVDPAKAAGNGPVVGPSIPTSS 181

Query: 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVV-TSQETNLVAGCRRIYAHAHDYH 235
           K Y ANGGC ++  G  SND SFP GGV SL LPVVV TS E +LV  CRRIYAHAHDYH
Sbjct: 182 KPYTANGGCLDKPLGL-SNDFSFPLGGVPSLHLPVVVLTSSEISLVPRCRRIYAHAHDYH 240

Query: 236 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC 295
           INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC
Sbjct: 241 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC 300

Query: 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355
           N+LAYSSS+GSIRL+DMRQSALCD+HSKLFEEQE PG+RSFFTEIIASISDIKFA++GR+
Sbjct: 301 NILAYSSSRGSIRLVDMRQSALCDSHSKLFEEQEVPGSRSFFTEIIASISDIKFAKDGRY 360

Query: 356 ILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKV 389
           ILSRDYMTLKLWDINMDSGPV+TFQVHE+LRPK+
Sbjct: 361 ILSRDYMTLKLWDINMDSGPVSTFQVHENLRPKL 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442335|ref|XP_002280910.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/375 (84%), Positives = 342/375 (91%), Gaps = 2/375 (0%)

Query: 15  LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
           LEWKFSQVFGER AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDT+D+GG R
Sbjct: 17  LEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSR 76

Query: 75  RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
           RDLE MDY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ+AN AL+LLSTN
Sbjct: 77  RDLERMDYPI-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTN 135

Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
           DKTIK WKVQEKKVKK+ D N+ P KA GNG +  S  S  PK Y+ANGG  +R++   S
Sbjct: 136 DKTIKFWKVQEKKVKKISDMNLDPSKAVGNGSVASSSNSTSPKPYLANGGSPDRSYSYLS 195

Query: 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254
           ND SFPPGG+ SLRLP  V+S ET+LVA CRR+YAHAHDYHINSISNNSDGETFISADDL
Sbjct: 196 NDFSFPPGGIPSLRLP-TVSSPETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDL 254

Query: 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314
           RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL D+RQ
Sbjct: 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLNDLRQ 314

Query: 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 374
           SALCD+HSKLFEEQEAPG+RSFFTEIIASISDIKF+++GR ILSRDYMTLKLWDINMDSG
Sbjct: 315 SALCDSHSKLFEEQEAPGSRSFFTEIIASISDIKFSKDGRFILSRDYMTLKLWDINMDSG 374

Query: 375 PVATFQVHEHLRPKV 389
           PV+TFQVHE+LRPK+
Sbjct: 375 PVSTFQVHEYLRPKL 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550460|ref|XP_003543605.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max]

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/391 (81%), Positives = 348/391 (89%), Gaps = 6/391 (1%)

Query: 3   NGGGSSEAAA----QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 58
           NGG    AA      PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR
Sbjct: 2   NGGDEVVAAPAGPPHPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 61

Query: 59  VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118
           VVLFERTDT+D+GG  RDLE +DYS+ RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI
Sbjct: 62  VVLFERTDTKDHGGSSRDLERVDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 121

Query: 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178
           RWCQ AN AL+LLSTNDKTIK WKVQEKKVKK+ + NV P K+ GNG I  S  S+  + 
Sbjct: 122 RWCQIANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRP 181

Query: 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS 238
           Y+ANGG  +R +   SND SFPPGG+ SLRLP+V +S ET+LVA CRR+YAHAHDYHINS
Sbjct: 182 YLANGGSPDR-YNYISNDFSFPPGGIPSLRLPMV-SSHETSLVARCRRVYAHAHDYHINS 239

Query: 239 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 298
           ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN L
Sbjct: 240 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTL 299

Query: 299 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358
           AYSSSKGSIRL+D+RQSALCD+H+KLFEEQEAPG+RSFFTEIIASISDIKF ++GR+ILS
Sbjct: 300 AYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILS 359

Query: 359 RDYMTLKLWDINMDSGPVATFQVHEHLRPKV 389
           RDYMTLKLWDINMDSGPVATFQVHE+LRPK+
Sbjct: 360 RDYMTLKLWDINMDSGPVATFQVHEYLRPKL 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556686|ref|XP_003546654.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/375 (84%), Positives = 343/375 (91%), Gaps = 2/375 (0%)

Query: 15  LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
           LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDT+D+GG R
Sbjct: 18  LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSR 77

Query: 75  RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
           RDLE MDYS+ RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ+AN AL+LLSTN
Sbjct: 78  RDLERMDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTN 137

Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
           DKTIK WKVQEKKVKK+ + NV P K+ GNG I  S  S+  + Y+ NGG  +R +   S
Sbjct: 138 DKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRPYLVNGGSPDR-YNYIS 196

Query: 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254
           ND SFPPGG+ SLRLP+V +S ET+LVA CRR+YAHAHDYHINSISNNSDGETFISADDL
Sbjct: 197 NDFSFPPGGLPSLRLPMV-SSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDL 255

Query: 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314
           RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN LAYSSSKGSIRL+D+RQ
Sbjct: 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQ 315

Query: 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 374
           SALCD+H+KLFEEQEAPG+RSFFTEIIASISDIKF ++GR+ILSRDYMTLKLWDINMDSG
Sbjct: 316 SALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSG 375

Query: 375 PVATFQVHEHLRPKV 389
           PVATFQVHE+LRPK+
Sbjct: 376 PVATFQVHEYLRPKL 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738699|emb|CBI27944.3| unnamed protein product [Vitis vinifera]

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/389 (79%), Positives = 341/389 (87%), Gaps = 6/389 (1%)

Query: 3   NGG--GSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
           NGG     EA A+PLEW+FSQVFGERTAGEEVQEVDIISAIEFDK+GDHLATGDRGGRVV
Sbjct: 2   NGGEVKEVEAPAEPLEWRFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVV 61

Query: 61  LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
           LFERTD RD+GG RRDLEMMD+ +  HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62  LFERTDKRDHGGYRRDLEMMDHPVRTHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 121

Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
           CQ+AN+AL+LLSTNDKTIK WK+QEKKVKK+ D N+ P KA GNG    +   +I K Y+
Sbjct: 122 CQTANNALFLLSTNDKTIKFWKIQEKKVKKICDMNIDPSKATGNG----NPACSIVKPYV 177

Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS 240
            NGGC +R++G  S D SFP G  ++L  P VV S ET+L A CRRIYAHAHDYHINSIS
Sbjct: 178 TNGGCADRSYGYLSKDFSFPAGSFAALHFPTVVHSNETSLSARCRRIYAHAHDYHINSIS 237

Query: 241 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300
           NNSDGETFISADDLRINLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHPTHCNMLAY
Sbjct: 238 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNMLAY 297

Query: 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360
           SSSKGSIRLID+RQSALCD+H+KLFE  EAP ++SFFTEIIASISDIKF ++GR+ILSRD
Sbjct: 298 SSSKGSIRLIDLRQSALCDSHAKLFEGMEAPNSKSFFTEIIASISDIKFGKDGRYILSRD 357

Query: 361 YMTLKLWDINMDSGPVATFQVHEHLRPKV 389
           YM LKLWDINMDSGPVATFQVHE+LRPK+
Sbjct: 358 YMNLKLWDINMDSGPVATFQVHEYLRPKL 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11094369|gb|AAG29595.1|AF196288_1 Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/391 (79%), Positives = 348/391 (89%), Gaps = 5/391 (1%)

Query: 3   NGGG----SSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 58
           NGG     + E   QPLEWKFSQVFGER AGEEVQEVDIISAIEFDKSGDHLATGDRGGR
Sbjct: 2   NGGDEVVVAPEEPVQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 61

Query: 59  VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118
           VVLFERTD++D  G R DLE MDYS++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI
Sbjct: 62  VVLFERTDSKDQHGSRSDLERMDYSVNRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 121

Query: 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178
           +WCQ+AN A++LLSTNDKTIK WKVQEKKVKK+ D N+   KA GNG I  S  S+  K 
Sbjct: 122 KWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMNIDSSKAMGNGSIASSSNSSSSKP 181

Query: 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS 238
           ++ANGG  ++++   SND SFPPGG+ SL+LP VV S ET+L+A CRR+YAHAHDYHINS
Sbjct: 182 HLANGGPSDKSYSYLSNDFSFPPGGLPSLKLPSVV-SHETSLLARCRRVYAHAHDYHINS 240

Query: 239 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 298
           ISNNSDGETFISADDLRINLWNLEIS+QSFNIVDVKPANMEDLTEVITSAEFHPTHCN L
Sbjct: 241 ISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTL 300

Query: 299 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358
           AYSSSKGSIRL+D+RQSALCD+H+KLFEEQEAPG+RSFFTEIIASISDIKFA++GR+ILS
Sbjct: 301 AYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRYILS 360

Query: 359 RDYMTLKLWDINMDSGPVATFQVHEHLRPKV 389
           RDYMTLKLWDINMDSGPVAT++VHEHLRP++
Sbjct: 361 RDYMTLKLWDINMDSGPVATYRVHEHLRPRL 391

Source: Medicago sativa subsp. x varia

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810182|emb|CAN66900.1| hypothetical protein VITISV_029693 [Vitis vinifera]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/389 (79%), Positives = 340/389 (87%), Gaps = 7/389 (1%)

Query: 3   NGG--GSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
           NGG     EA A+PLEW+FSQVFGERTAGEEVQEVDIISAIEFDK+GDHLATGDRGGRVV
Sbjct: 2   NGGEVKEVEAPAEPLEWRFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVV 61

Query: 61  LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
           LFERTD RD+GG RRDLEMMD+ +  HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62  LFERTDKRDHGGYRRDLEMMDHXVRTHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 121

Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
           CQ+AN+AL+LLSTNDKTIK WK+QEKKVKK+ D N+ P KA GNG    +   +I K Y+
Sbjct: 122 CQTANNALFLLSTNDKTIKFWKIQEKKVKKICDMNIDPSKATGNG----NPACSIVKPYV 177

Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS 240
            NGGC +R++G  S D SFP G  ++L  P V  S ET+L A CRRIYAHAHDYHINSIS
Sbjct: 178 TNGGCADRSYGYLSKDFSFPAGSFAALHFPTV-HSNETSLSARCRRIYAHAHDYHINSIS 236

Query: 241 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300
           NNSDGETFISADDLRINLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHPTHCNMLAY
Sbjct: 237 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNMLAY 296

Query: 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360
           SSSKGSIRLID+RQSALCD+H+KLFE  EAP ++SFFTEIIASISDIKF ++GR+ILSRD
Sbjct: 297 SSSKGSIRLIDLRQSALCDSHAKLFEGMEAPNSKSFFTEIIASISDIKFGKDGRYILSRD 356

Query: 361 YMTLKLWDINMDSGPVATFQVHEHLRPKV 389
           YM LKLWDINMDSGPVATFQVHE+LRPK+
Sbjct: 357 YMNLKLWDINMDSGPVATFQVHEYLRPKL 385

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444987|ref|XP_002282791.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/389 (79%), Positives = 340/389 (87%), Gaps = 7/389 (1%)

Query: 3   NGG--GSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
           NGG     EA A+PLEW+FSQVFGERTAGEEVQEVDIISAIEFDK+GDHLATGDRGGRVV
Sbjct: 2   NGGEVKEVEAPAEPLEWRFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVV 61

Query: 61  LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
           LFERTD RD+GG RRDLEMMD+ +  HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62  LFERTDKRDHGGYRRDLEMMDHPVRTHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 121

Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
           CQ+AN+AL+LLSTNDKTIK WK+QEKKVKK+ D N+ P KA GNG    +   +I K Y+
Sbjct: 122 CQTANNALFLLSTNDKTIKFWKIQEKKVKKICDMNIDPSKATGNG----NPACSIVKPYV 177

Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS 240
            NGGC +R++G  S D SFP G  ++L  P V  S ET+L A CRRIYAHAHDYHINSIS
Sbjct: 178 TNGGCADRSYGYLSKDFSFPAGSFAALHFPTV-HSNETSLSARCRRIYAHAHDYHINSIS 236

Query: 241 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300
           NNSDGETFISADDLRINLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHPTHCNMLAY
Sbjct: 237 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNMLAY 296

Query: 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360
           SSSKGSIRLID+RQSALCD+H+KLFE  EAP ++SFFTEIIASISDIKF ++GR+ILSRD
Sbjct: 297 SSSKGSIRLIDLRQSALCDSHAKLFEGMEAPNSKSFFTEIIASISDIKFGKDGRYILSRD 356

Query: 361 YMTLKLWDINMDSGPVATFQVHEHLRPKV 389
           YM LKLWDINMDSGPVATFQVHE+LRPK+
Sbjct: 357 YMNLKLWDINMDSGPVATFQVHEYLRPKL 385

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2007963	501	ATB BETA [Arabidopsis thaliana	0.933	0.760	0.751	1e-155
DICTYBASE|DDB_G0283905	483	phr2aB "protein phosphatase 2A	0.899	0.759	0.507	1.7e-98
CGD|CAL0004658	519	orf19.1468 [Candida albicans (	0.470	0.369	0.606	7.7e-97
UNIPROTKB|Q66LE6	453	PPP2R2D "Serine/threonine-prot	0.475	0.428	0.620	2e-96
MGI|MGI:1289252	453	Ppp2r2d "protein phosphatase 2	0.475	0.428	0.610	4.2e-96
UNIPROTKB|Q6DIY3	447	ppp2r2d "Serine/threonine-prot	0.475	0.434	0.630	6.9e-96
UNIPROTKB|F1NNN2	450	PPP2R2D "Serine/threonine-prot	0.475	0.431	0.620	1.8e-95
UNIPROTKB|F1NS69	451	PPP2R2D "Serine/threonine-prot	0.475	0.430	0.620	1.8e-95
UNIPROTKB|Q5ZIY5	451	PPP2R2D "Serine/threonine-prot	0.475	0.430	0.620	1.8e-95
RGD|708356	453	Ppp2r2d "protein phosphatase 2	0.475	0.428	0.605	3.8e-95

TAIR|locus:2007963 ATB BETA [Arabidopsis thaliana (taxid:3702)]

 Score = 1518 (539.4 bits), Expect = 1.0e-155, P = 1.0e-155
 Identities = 297/395 (75%), Positives = 328/395 (83%)

Query:     3 NGGGSSEAAAQP--LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
             NGG  +  +  P  LEW+FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV
Sbjct:     2 NGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 61

Query:    61 LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
             LFERTDT+D+GG R+DLE  DY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct:    62 LFERTDTKDHGGSRKDLEQTDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120

Query:   121 CQSANSALYLLSTNDKTIXXXXXXXXXXXXXFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
             CQ AN AL+LLSTNDKTI              + N+ P ++           S IP   +
Sbjct:   121 CQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDPSES-----------SNIPPQLV 169

Query:   181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS 240
              NG   ++     S D SFPPGG+ SLRLPVVVTSQETNLVA CRR+YAHAHDYHINSIS
Sbjct:   170 TNGLPADKGHDYLSKDFSFPPGGIPSLRLPVVVTSQETNLVARCRRVYAHAHDYHINSIS 229

Query:   241 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300
             N+SDGETFISADDLR+NLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLAY
Sbjct:   230 NSSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAY 289

Query:   301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360
             SSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKF+++GR+ILSRD
Sbjct:   290 SSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSRD 349

Query:   361 YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKN 395
             YMTLKLWDINMDSGPVA++QVHEHLRP++    +N
Sbjct:   350 YMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYEN 384

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=ISS

DICTYBASE|DDB_G0283905 phr2aB "protein phosphatase 2A B55 regulatory subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 195/384 (50%), Positives = 270/384 (70%)

Query:    13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGG 72
             +PL+W+FSQ FG +   E+  + +++ AIEFD++GD +A GD+GG+V+L +RT   D   
Sbjct:     3 EPLDWRFSQTFGGK-GNEDASDANVVPAIEFDQTGDFIAVGDKGGKVLLLKRT--HDKQS 59

Query:    73 QRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS 132
              ++         S+ PE+R+ +EFQSHEPEFDYLKSLEIEEKINKI+WC   N A +LL+
Sbjct:    60 SKK---------SKLPEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFLLT 110

Query:   133 TNDKTIXXXXXXXXXXXXXFDWNVHPEKAAGNGPIFGSHV-SAIPKSYMANGGCGERNFG 191
             TNDKTI                +      + NG +  ++  S    +Y+ N   G  N  
Sbjct:   111 TNDKTIKLWKVYEKKIKQV-STSATTTGPSYNGSLASNNTRSPSHTTYIYNSS-GAHNMN 168

Query:   192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251
                N+S+     +++ ++P + T++ET + A  R+I+ +AH YHINSIS NSDGET+IS+
Sbjct:   169 NNMNNSN-NNNNLNNFKIPKL-TTRETVVTATPRKIFQNAHAYHINSISLNSDGETYISS 226

Query:   252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311
             DDLRI+LWNL I+ + FN+VD+KP NMEDLTEVITSAEFHPT CN+  YSSSKG+I+L D
Sbjct:   227 DDLRIHLWNLNINTECFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKLGD 286

Query:   312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371
             +R SALCD H+K+FEE E P  +SFF+EII+SISDIKF+R+GR+ILSRD++TLKLWDINM
Sbjct:   287 LRSSALCDNHAKVFEEYEDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWDINM 346

Query:   372 DSGPVATFQVHEHLRPKVMHSSKN 395
             ++ PV T Q+H++L+PK+    +N
Sbjct:   347 ENKPVKTIQIHDYLKPKLCDLYEN 370

GO:0005615 "extracellular space" evidence=IDA

GO:0005829 "cytosol" evidence=IEA;IDA

GO:0005813 "centrosome" evidence=IDA

GO:0017018 "myosin phosphatase activity" evidence=IDA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0031034 "myosin filament assembly" evidence=IDA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;IDA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

CGD|CAL0004658 orf19.1468 [Candida albicans (taxid:5476)]

 Score = 633 (227.9 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
 Identities = 117/193 (60%), Positives = 157/193 (81%)

Query:   203 GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLE 262
             G+SSL+LP +    +  + A  ++IYA+AH YHINSIS NSD ET++SADDLRINLWNL 
Sbjct:   143 GISSLKLPQLQLHDKL-ISAQPKKIYANAHAYHINSISVNSDQETYLSADDLRINLWNLG 201

Query:   263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322
             I++QSFNIVD+KPANME+LTEVITSAEFHP+ CN+  YSSSKG+I+L DMR ++LCD+H+
Sbjct:   202 IADQSFNIVDIKPANMEELTEVITSAEFHPSQCNLFMYSSSKGTIKLSDMRSNSLCDSHA 261

Query:   323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVH 382
             K+FEE   P + +FFTEI +SISD+KF+ +GR+I SRDYMT+K+WD+ M++ P+ T  VH
Sbjct:   262 KIFEEYLDPSSHNFFTEITSSISDVKFSHDGRYIASRDYMTVKIWDLAMENKPLKTIDVH 321

Query:   383 EHLRPKVMHSSKN 395
             EHLR ++  + +N
Sbjct:   322 EHLRERLCDTYEN 334

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0005935 "cellular bud neck" evidence=IEA

GO:0000078 "cell shape checkpoint" evidence=IEA

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IEA

GO:2000769 "regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0001100 "negative regulation of exit from mitosis" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IEA

GO:0031030 "negative regulation of septation initiation signaling cascade" evidence=IEA

GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

UNIPROTKB|Q66LE6 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Homo sapiens (taxid:9606)]

 Score = 652 (234.6 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
 Identities = 121/195 (62%), Positives = 161/195 (82%)

Query:   201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
             P  +++LR+P++    +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+
Sbjct:   152 PFRITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWH 210

Query:   261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
             LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN+  YSSSKG+IRL DMR SALCD 
Sbjct:   211 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDR 270

Query:   321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
             HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+S PV T Q
Sbjct:   271 HSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRPVETHQ 330

Query:   381 VHEHLRPKVMHSSKN 395
             VHE+LR K+    +N
Sbjct:   331 VHEYLRSKLCSLYEN 345

GO:0007165 "signal transduction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

MGI|MGI:1289252 Ppp2r2d "protein phosphatase 2, regulatory subunit B, delta isoform" [Mus musculus (taxid:10090)]

 Score = 645 (232.1 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
 Identities = 119/195 (61%), Positives = 160/195 (82%)

Query:   201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
             P  +++LR+P++    +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+
Sbjct:   152 PFRITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWH 210

Query:   261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
             LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN+  YSSSKG+IRL DMR SALCD 
Sbjct:   211 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDR 270

Query:   321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
             H+K FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+  PV T Q
Sbjct:   271 HAKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEGRPVETHQ 330

Query:   381 VHEHLRPKVMHSSKN 395
             VHE+LR K+    +N
Sbjct:   331 VHEYLRSKLCSLYEN 345

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q6DIY3 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 667 (239.9 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
 Identities = 123/195 (63%), Positives = 163/195 (83%)

Query:   201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
             P  ++SLR+P++    +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+
Sbjct:   146 PFRITSLRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWH 204

Query:   261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
             LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+  YSSSKG+IRL DMR SALCD 
Sbjct:   205 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSALCDR 264

Query:   321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
             HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+S PV T+Q
Sbjct:   265 HSKFFEEPEDPSSRSFFSEIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPVETYQ 324

Query:   381 VHEHLRPKVMHSSKN 395
             VHE+LR K+    +N
Sbjct:   325 VHEYLRSKLCSLYEN 339

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

UNIPROTKB|F1NNN2 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 661 (237.7 bits), Expect = 1.8e-95, Sum P(2) = 1.8e-95
 Identities = 121/195 (62%), Positives = 163/195 (83%)

Query:   201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
             P  +++LR+P++    +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+
Sbjct:   149 PFKITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWH 207

Query:   261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
             LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+  YSSSKG+IRL DMR SALCD 
Sbjct:   208 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDR 267

Query:   321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
             HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+Q
Sbjct:   268 HSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ 327

Query:   381 VHEHLRPKVMHSSKN 395
             VHE+LR K+    +N
Sbjct:   328 VHEYLRSKLCSLYEN 342

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|F1NS69 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 661 (237.7 bits), Expect = 1.8e-95, Sum P(2) = 1.8e-95
 Identities = 121/195 (62%), Positives = 163/195 (83%)

Query:   201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
             P  +++LR+P++    +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+
Sbjct:   150 PFKITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWH 208

Query:   261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
             LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+  YSSSKG+IRL DMR SALCD 
Sbjct:   209 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDR 268

Query:   321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
             HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+Q
Sbjct:   269 HSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ 328

Query:   381 VHEHLRPKVMHSSKN 395
             VHE+LR K+    +N
Sbjct:   329 VHEYLRSKLCSLYEN 343

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|Q5ZIY5 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 661 (237.7 bits), Expect = 1.8e-95, Sum P(2) = 1.8e-95
 Identities = 121/195 (62%), Positives = 163/195 (83%)

Query:   201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
             P  +++LR+P++    +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+
Sbjct:   150 PFKITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWH 208

Query:   261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
             LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+  YSSSKG+IRL DMR SALCD 
Sbjct:   209 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDR 268

Query:   321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
             HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+Q
Sbjct:   269 HSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ 328

Query:   381 VHEHLRPKVMHSSKN 395
             VHE+LR K+    +N
Sbjct:   329 VHEYLRSKLCSLYEN 343

GO:0007165 "signal transduction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

RGD|708356 Ppp2r2d "protein phosphatase 2, regulatory subunit B, delta" [Rattus norvegicus (taxid:10116)]

 Score = 640 (230.4 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
 Identities = 118/195 (60%), Positives = 159/195 (81%)

Query:   201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
             P  +++LR+P++    +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+
Sbjct:   152 PFRITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWH 210

Query:   261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
             LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN+  YSSSKG+IRL DMR SALCD 
Sbjct:   211 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDR 270

Query:   321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
             H+K FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+  PV T  
Sbjct:   271 HAKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEGRPVETHH 330

Query:   381 VHEHLRPKVMHSSKN 395
             VHE+LR K+    +N
Sbjct:   331 VHEYLRSKLCSLYEN 345

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007067 "mitosis" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0008195 "phosphatidate phosphatase activity" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0051301 "cell division" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0E2P1	2ABB_ORYSJ	No assigned EC number	0.7887	0.9117	0.7085	yes	no
Q39247	2ABB_ARATH	No assigned EC number	0.7892	0.9191	0.7485	yes	no
Q54Q99	PH2AB_DICDI	No assigned EC number	0.5312	0.875	0.7391	yes	no
Q6DIY3	2ABD_XENTR	No assigned EC number	0.5207	0.8063	0.7360	yes	no
P36872	2ABA_DROME	No assigned EC number	0.5090	0.8186	0.6693	yes	no
Q29090	2ABA_PIG	No assigned EC number	0.5277	0.7622	0.7300	yes	no
Q66LE6	2ABD_HUMAN	No assigned EC number	0.5226	0.7941	0.7152	yes	no
Q12702	2ABA_SCHPO	No assigned EC number	0.5508	0.7916	0.6976	yes	no
P56932	2ABD_RAT	No assigned EC number	0.5226	0.7941	0.7152	yes	no
P63150	2ABA_RABIT	No assigned EC number	0.5155	0.8063	0.7360	yes	no
Q5ZIY5	2ABD_CHICK	No assigned EC number	0.5226	0.7941	0.7184	yes	no
Q00362	2ABA_YEAST	No assigned EC number	0.5181	0.8431	0.6539	yes	no
A2X2K3	2ABB_ORYSI	No assigned EC number	0.7887	0.9117	0.7085	N/A	no
Q6P1F6	2ABA_MOUSE	No assigned EC number	0.5155	0.8063	0.7360	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.495.1 hypothetical protein (506 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
COG5170	460	COG5170, CDC55, Serine/threonine protein phosphata	1e-126
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.003

>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

 Score =  372 bits (957), Expect = e-126
 Identities = 185/379 (48%), Positives = 227/379 (59%), Gaps = 62/379 (16%)

Query: 16  EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
             KF Q FG++       E D I+A+EFD++G +LATGD+GGRVVLFER           
Sbjct: 7   ILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFER----------- 55

Query: 76  DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
                    S   E+++ TEFQSHE EFDYLKSLEIEEKIN I W        +LLSTND
Sbjct: 56  -------EKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108

Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
           KTIKLWK+ EK +K V + N+                                     S+
Sbjct: 109 KTIKLWKIYEKNLKVVAENNL-------------------------------------SD 131

Query: 196 DSSFPPGG----VSSLRLPVVVTSQETNLVAGC-RRIYAHAHDYHINSISNNSDGETFIS 250
               P GG       L LP +  S+   ++A    R+YA+AH YHINSIS NSD ET +S
Sbjct: 132 SFHSPMGGPLTSTKELLLPRL--SEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLS 189

Query: 251 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310
           ADDLRINLWNLEI + SFNIVD+KP NME+LTEVITSAEFHP  CN+  YSSSKG I+L 
Sbjct: 190 ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249

Query: 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370
           D+RQSALCD   KLFE         FF EI++SISD KF+ NGR+ILSRDY+T+K+WD+N
Sbjct: 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVN 309

Query: 371 MDSGPVATFQVHEHLRPKV 389
           M   P+ T  +H  L  ++
Sbjct: 310 MAKNPIKTIPMHCDLMDEL 328

Length = 460

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 52/253 (20%), Positives = 92/253 (36%), Gaps = 67/253 (26%)

Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS-YMANGGCGERNFGCA 193
           D TIK+W ++  ++ +      H              V+A     Y+A            
Sbjct: 30  DGTIKVWDLETGELLRTL--KGHT--------GPVRDVAASADGTYLA----------SG 69

Query: 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252
           S+D +            + +   ET     C R     H  +++S++ + DG    S+  
Sbjct: 70  SSDKT------------IRLWDLETG---ECVRTL-TGHTSYVSSVAFSPDGRILSSSSR 113

Query: 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312
           D  I +W++E       +           T+ + S  F P     +A SS  G+I+L D+
Sbjct: 114 DKTIKVWDVETGKCLTTLRGH--------TDWVNSVAFSPDG-TFVASSSQDGTIKLWDL 164

Query: 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL--SRDYMTLKLWDIN 370
           R      T                 T     ++ + F+ +G  +L  S D  T+KLWD++
Sbjct: 165 RTGKCVAT----------------LTGHTGEVNSVAFSPDGEKLLSSSSD-GTIKLWDLS 207

Query: 371 MDSGPVATFQVHE 383
                + T + HE
Sbjct: 208 TGK-CLGTLRGHE 219

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 65/353 (18%), Positives = 117/353 (33%), Gaps = 104/353 (29%)

Query: 36  DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95
             ++ + F   G  LATG   G + ++             DLE  +              
Sbjct: 10  GGVTCVAFSPDGKLLATGSGDGTIKVW-------------DLETGEL----------LRT 46

Query: 96  FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155
            + H               +  +     A+       ++DKTI+LW ++    + V    
Sbjct: 47  LKGHT------------GPVRDVAAS--ADGTYLASGSSDKTIRLWDLE--TGECVRTLT 90

Query: 156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTS 215
            H         +     S  P   + +           S D         ++++  V T 
Sbjct: 91  GH------TSYVSSVAFS--PDGRILSSS---------SRD--------KTIKVWDVETG 125

Query: 216 QETNLVAGCRRIYAHAHDYHINSISNNSDGETFI--SADDLRINLWNLEISNQSFNIVDV 273
           +          +  H     +NS++ + DG TF+  S+ D  I LW+L     +   V  
Sbjct: 126 KC------LTTLRGHTDW--VNSVAFSPDG-TFVASSSQDGTIKLWDLR----TGKCV-- 170

Query: 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333
             A +   T  + S  F P    +L+ SSS G+I+L D+       T        E    
Sbjct: 171 --ATLTGHTGEVNSVAFSPDGEKLLS-SSSDGTIKLWDLSTGKCLGT----LRGHENG-- 221

Query: 334 RSFFTEIIASISDIKFARNGRHILS--RDYMTLKLWDINMDSGPVATFQVHEH 384
                     ++ + F+ +G  + S   D  T+++WD+      V T   H +
Sbjct: 222 ----------VNSVAFSPDGYLLASGSEDG-TIRVWDLRTGE-CVQTLSGHTN 262

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.5 bits (93), Expect = 0.001
 Identities = 62/306 (20%), Positives = 103/306 (33%), Gaps = 60/306 (19%)

Query: 82  YSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLW 141
            S S        ++     P+   L     E+ I  I +  S +  L L  ++D TIKLW
Sbjct: 35  SSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAF--SPDGELLLSGSSDGTIKLW 92

Query: 142 KVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP 201
            +   +                   + G H S++                 +S D +   
Sbjct: 93  DLDNGEKLIKS--------------LEGLHDSSV------------SKLALSSPDGNSIL 126

Query: 202 GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLW 259
              SSL   V +    T    G        H   + S++ + DG+   S    D  I LW
Sbjct: 127 LASSSLDGTVKLWDLSTP---GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLW 183

Query: 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 319
           +L              + +   T+ ++S  F P    ++A  SS G+IRL D+    L  
Sbjct: 184 DLRTGK--------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL- 234

Query: 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL--SRDYMTLKLWDINMDSGPVA 377
                          +      + +S   F+ +G  +   S D  T++LWD+   S  + 
Sbjct: 235 -------------RSTLSGHSDSVVSS--FSPDGSLLASGSSDG-TIRLWDLRSSSSLLR 278

Query: 378 TFQVHE 383
           T   H 
Sbjct: 279 TLSGHS 284

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 62/385 (16%), Positives = 125/385 (32%), Gaps = 46/385 (11%)

Query: 36  DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95
           D I++I F   G+ L +G   G + L++  +          L     S          + 
Sbjct: 66  DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 96  FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLL------------STNDKTIKLWKV 143
             +       +K  ++      IR  +  + ++  L            S+ D TIKLW +
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Query: 144 QEKKVKKVFD---WNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFP 200
           +  K           V     + +G +  +  S+     + +   G+      S  S   
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245

Query: 201 PGGVSSLRLPVVVTSQET-----NLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DD 253
               S     +   S +      +L +    +   + H   + S++ + DG+   S   D
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305

Query: 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313
             + LW+LE          +    ++     ++S  F P    +++  S  G+IRL D+R
Sbjct: 306 GTVRLWDLETGKL------LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359

Query: 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMD 372
                                    E  +++  + F+ +GR + S     T++LWD++  
Sbjct: 360 TGKP-----------------LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402

Query: 373 SGPVATFQVHEHLRPKVMHSSKNYF 397
           S           +            
Sbjct: 403 SLLRNLDGHTSRVTSLDFSPDGKSL 427

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0643	327	consensus Translation initiation factor 3, subunit	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG1539	910	consensus WD repeat protein [General function pred	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.85
KOG0646	476	consensus WD40 repeat protein [General function pr	99.85
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.84
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.84
KOG0267	825	consensus Microtubule severing protein katanin p80	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG2048	691	consensus WD40 repeat protein [General function pr	99.82
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.82
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.82
KOG1539	910	consensus WD repeat protein [General function pred	99.81
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG1274	933	consensus WD40 repeat protein [General function pr	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.81
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.79
KOG2055	514	consensus WD40 repeat protein [General function pr	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.79
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.79
KOG1273	405	consensus WD40 repeat protein [General function pr	99.78
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.75
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.75
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.74
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.74
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.74
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.73
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.72
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.72
KOG1334	559	consensus WD40 repeat protein [General function pr	99.71
KOG1963	792	consensus WD40 repeat protein [General function pr	99.71
KOG1963	792	consensus WD40 repeat protein [General function pr	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
COG2319	466	FOG: WD40 repeat [General function prediction only	99.69
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.66
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.66
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.65
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.65
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.65
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.64
PRK01742	429	tolB translocation protein TolB; Provisional	99.64
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.63
KOG2139	445	consensus WD40 repeat protein [General function pr	99.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.62
COG2319	466	FOG: WD40 repeat [General function prediction only	99.62
KOG1188	376	consensus WD40 repeat protein [General function pr	99.62
PRK11028	330	6-phosphogluconolactonase; Provisional	99.62
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.61
KOG4227	609	consensus WD40 repeat protein [General function pr	99.61
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.61
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.6
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.59
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.58
PRK03629	429	tolB translocation protein TolB; Provisional	99.58
KOG2321	703	consensus WD40 repeat protein [General function pr	99.58
KOG0649	325	consensus WD40 repeat protein [General function pr	99.56
KOG2139	445	consensus WD40 repeat protein [General function pr	99.55
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.55
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.54
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.54
PRK05137	435	tolB translocation protein TolB; Provisional	99.52
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.51
PRK03629	429	tolB translocation protein TolB; Provisional	99.51
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.49
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.49
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.46
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.46
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.45
PRK04922	433	tolB translocation protein TolB; Provisional	99.44
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.44
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.44
KOG2315	566	consensus Predicted translation initiation factor	99.43
PRK01029	428	tolB translocation protein TolB; Provisional	99.42
PRK02889	427	tolB translocation protein TolB; Provisional	99.41
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.37
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.37
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.36
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.34
KOG1310	758	consensus WD40 repeat protein [General function pr	99.34
PRK04792	448	tolB translocation protein TolB; Provisional	99.34
KOG4547	541	consensus WD40 repeat-containing protein [General	99.34
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.33
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.33
PRK00178	430	tolB translocation protein TolB; Provisional	99.33
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.32
KOG4547	541	consensus WD40 repeat-containing protein [General	99.3
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.27
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.26
PRK01029	428	tolB translocation protein TolB; Provisional	99.24
PRK00178	430	tolB translocation protein TolB; Provisional	99.24
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.23
PRK04792	448	tolB translocation protein TolB; Provisional	99.22
KOG1334	559	consensus WD40 repeat protein [General function pr	99.22
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.2
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.19
KOG2321	703	consensus WD40 repeat protein [General function pr	99.19
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.18
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.15
COG4946	668	Uncharacterized protein related to the periplasmic	99.11
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.08
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.04
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.03
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.03
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.03
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.02
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.99
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.98
KOG2314	698	consensus Translation initiation factor 3, subunit	98.94
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.93
PRK04043	419	tolB translocation protein TolB; Provisional	98.92
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.89
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.88
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.88
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.87
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.85
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.83
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.82
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.79
KOG2314	698	consensus Translation initiation factor 3, subunit	98.79
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.79
KOG2315	566	consensus Predicted translation initiation factor	98.75
KOG2695	425	consensus WD40 repeat protein [General function pr	98.73
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.72
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.72
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.7
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.67
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.66
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.65
PRK04043	419	tolB translocation protein TolB; Provisional	98.64
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.6
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.56
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.56
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.54
COG4946	668	Uncharacterized protein related to the periplasmic	98.54
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.5
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.49
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.46
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.45
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.42
KOG2695	425	consensus WD40 repeat protein [General function pr	98.41
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.41
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.37
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.33
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.32
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.3
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.27
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.27
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.27
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.26
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.23
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.22
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.19
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.16
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.15
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.15
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.06
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.01
KOG3621	726	consensus WD40 repeat-containing protein [General	98.01
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.99
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.97
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.93
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.88
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.85
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.8
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.8
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.79
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.78
KOG3621	726	consensus WD40 repeat-containing protein [General	97.74
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.72
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.7
PRK02888	635	nitrous-oxide reductase; Validated	97.69
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.67
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.65
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.63
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.62
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.55
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.52
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.52
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.5
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.48
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.46
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.4
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.36
PRK02888	635	nitrous-oxide reductase; Validated	97.35
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.31
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.3
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.29
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.18
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.18
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.97
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.91
KOG2444	238	consensus WD40 repeat protein [General function pr	96.89
KOG2395	644	consensus Protein involved in vacuole import and d	96.89
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.75
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.62
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.59
COG3391	381	Uncharacterized conserved protein [Function unknow	96.54
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.48
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.47
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.45
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.34
PRK13616	591	lipoprotein LpqB; Provisional	96.32
KOG2395	644	consensus Protein involved in vacuole import and d	96.32
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.29
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.23
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.15
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.04
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.99
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.97
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.95
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.89
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.8
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.73
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.68
PRK13616	591	lipoprotein LpqB; Provisional	95.56
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.47
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.37
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.29
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.25
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.24
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.08
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.07
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.01
COG3391	381	Uncharacterized conserved protein [Function unknow	94.88
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.82
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.81
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.66
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.56
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.54
PHA02713	557	hypothetical protein; Provisional	94.5
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.49
KOG2444	238	consensus WD40 repeat protein [General function pr	94.43
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.12
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.0
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.92
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.91
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	93.87
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.81
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	93.55
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.52
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.42
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.21
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.79
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.76
COG5167	776	VID27 Protein involved in vacuole import and degra	92.4
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.31
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.86
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.66
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.65
COG4590	733	ABC-type uncharacterized transport system, permeas	91.44
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.43
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.28
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.87
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.8
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.57
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.31
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.08
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.01
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.01
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	89.59
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.55
PRK10115	686	protease 2; Provisional	89.13
KOG2247	615	consensus WD40 repeat-containing protein [General	88.97
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	88.97
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.79
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	88.68
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	88.57
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.34
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.64
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	86.49
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.39
PF13449	326	Phytase-like: Esterase-like activity of phytase	85.59
PF13449	326	Phytase-like: Esterase-like activity of phytase	85.49
PHA02713	557	hypothetical protein; Provisional	84.48
KOG2247	615	consensus WD40 repeat-containing protein [General	84.43
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	84.39
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.98
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.97
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	83.36
PHA02790	480	Kelch-like protein; Provisional	82.91
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	82.26
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	81.81
PHA03098	534	kelch-like protein; Provisional	81.58
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	81.51
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	81.44
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	81.04
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	80.57
COG4590	733	ABC-type uncharacterized transport system, permeas	80.54
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	80.09

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.3e-44  Score=292.38  Aligned_cols=282  Identities=19%  Similarity=0.267  Sum_probs=242.4

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ..++...+|..+.|+.+++.||||+.+|.++||+..+..                       .+..|.+|.         
T Consensus       170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----------------------~~~~l~gH~---------  217 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----------------------LLQTLRGHT---------  217 (459)
T ss_pred             hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----------------------eeEEEeccc---------
Confidence            446678899999999999999999999999999986553                       568899999         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         +.|.++.|+|..++..+|+|+.||++++|++.+...+..+..|...        |.       .++|+|+|++|   
T Consensus       218 ---~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~R--------Vs-------~VafHPsG~~L---  276 (459)
T KOG0272|consen  218 ---SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLAR--------VS-------RVAFHPSGKFL---  276 (459)
T ss_pred             ---cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhh--------he-------eeeecCCCcee---
Confidence               7799999999755678999999999999999998877777776543        33       78999999998   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                               .+++.|.+-++|| +.......       ...+|...|.+++|+|||.++++| -|..-+|||++++...+
T Consensus       277 ---------~TasfD~tWRlWD-~~tk~ElL-------~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im  339 (459)
T KOG0272|consen  277 ---------GTASFDSTWRLWD-LETKSELL-------LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM  339 (459)
T ss_pred             ---------eecccccchhhcc-cccchhhH-------hhcccccccceeEecCCCceeeccCccchhheeecccCcEEE
Confidence                     9999999999999 54322111       138999999999999999999999 89999999999655544


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      .        +.+|...|.+++|+|+| +.||+|+.|++++|||++..+.+    +++.+|            +.-|+.|.
T Consensus       340 ~--------L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~l----y~ipAH------------~nlVS~Vk  394 (459)
T KOG0272|consen  340 F--------LAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSEL----YTIPAH------------SNLVSQVK  394 (459)
T ss_pred             E--------ecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccccc----eecccc------------cchhhheE
Confidence            3        68899999999999999 99999999999999999987553    666666            57899999


Q ss_pred             Ecc-CCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeee---eeeceeeec
Q 015363          349 FAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM---GLDNIHTLY  407 (408)
Q Consensus       349 ~sp-dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~  407 (408)
                      |+| .|.+|+|++ |++++||...+ ..+++++.||++..-.+...+++++|   +.||--.||
T Consensus       395 ~~p~~g~fL~TasyD~t~kiWs~~~-~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW  457 (459)
T KOG0272|consen  395 YSPQEGYFLVTASYDNTVKIWSTRT-WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW  457 (459)
T ss_pred             ecccCCeEEEEcccCcceeeecCCC-cccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence            999 789999997 79999999998 79999999999999999888888876   457666555

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-43  Score=285.37  Aligned_cols=295  Identities=16%  Similarity=0.291  Sum_probs=244.8

Q ss_pred             ccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceee
Q 015363           15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT   94 (408)
Q Consensus        15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   94 (408)
                      -.|++..   +..-..-.+|..+|.|++|+|||+.||+|+.||.|++||.++++.                      .-.
T Consensus       140 R~WD~~T---eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~----------------------~g~  194 (480)
T KOG0271|consen  140 RLWDLDT---ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ----------------------IGR  194 (480)
T ss_pred             EeeccCC---CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----------------------ccc
Confidence            3466664   222223467999999999999999999999999999999988875                      345


Q ss_pred             eeccCCcccccccccccccceeEEEEee---cCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeec
Q 015363           95 EFQSHEPEFDYLKSLEIEEKINKIRWCQ---SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (408)
Q Consensus        95 ~~~~h~~~~~~~~~~~~~~~v~~v~~~p---~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (408)
                      .+.+|.            ..|++++|.|   .++..+||+++.||.++|||+..+.++..+..|..+        |.   
T Consensus       195 ~l~gH~------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~--------VT---  251 (480)
T KOG0271|consen  195 ALRGHK------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS--------VT---  251 (480)
T ss_pred             cccCcc------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--------eE---
Confidence            688999            7899999987   355679999999999999999999999988887654        33   


Q ss_pred             CCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeC---------
Q 015363          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN---------  242 (408)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~---------  242 (408)
                          ++.|--+|-             +++++.|++|++|+ ..      .+.+.+.+ .+|..+|+.++.+         
T Consensus       252 ----CvrwGG~gl-------------iySgS~DrtIkvw~-a~------dG~~~r~l-kGHahwvN~lalsTdy~LRtga  306 (480)
T KOG0271|consen  252 ----CVRWGGEGL-------------IYSGSQDRTIKVWR-AL------DGKLCREL-KGHAHWVNHLALSTDYVLRTGA  306 (480)
T ss_pred             ----EEEEcCCce-------------EEecCCCceEEEEE-cc------chhHHHhh-cccchheeeeeccchhhhhccc
Confidence                667766664             39999999999999 32      24555554 8999999998876         


Q ss_pred             --CCCC-------------------------EEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC
Q 015363          243 --SDGE-------------------------TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH  294 (408)
Q Consensus       243 --~~~~-------------------------~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  294 (408)
                        |.++                         .|++| +|.++.+|+-....+++..       +.+|..-|..+.|+||+
T Consensus       307 f~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r-------mtgHq~lVn~V~fSPd~  379 (480)
T KOG0271|consen  307 FDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR-------MTGHQALVNHVSFSPDG  379 (480)
T ss_pred             cccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh-------hhchhhheeeEEECCCc
Confidence              3333                         49999 9999999998877766643       78999999999999999


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCC
Q 015363          295 CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDS  373 (408)
Q Consensus       295 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~  373 (408)
                       +++|+++-|..|++||.++|+.+    .+|.+|            .+.|..++|+.|.++|++|+ |.++++|++++ .
T Consensus       380 -r~IASaSFDkSVkLW~g~tGk~l----asfRGH------------v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t-k  441 (480)
T KOG0271|consen  380 -RYIASASFDKSVKLWDGRTGKFL----ASFRGH------------VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT-K  441 (480)
T ss_pred             -cEEEEeecccceeeeeCCCcchh----hhhhhc------------cceeEEEEeccCccEEEEcCCCceEEEEEeee-e
Confidence             99999999999999999999765    566666            68999999999999999997 89999999998 7


Q ss_pred             CceeeeeecccccceEEecCCCeeeee---eceeeec
Q 015363          374 GPVATFQVHEHLRPKVMHSSKNYFMGL---DNIHTLY  407 (408)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~  407 (408)
                      ++...+.||..+...+.-.-++..++-   |+..+||
T Consensus       442 Kl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  442 KLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             eecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence            999999999999999988778877644   5655554

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.2e-41  Score=271.30  Aligned_cols=272  Identities=16%  Similarity=0.218  Sum_probs=219.9

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|.++|.|++|+|+|..||+|+-|.++|+||+.+...                       +.+.++|.         
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-----------------------~~t~KgH~---------  157 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-----------------------LFTCKGHK---------  157 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-----------------------ceeecCCc---------
Confidence            3458999999999999999999999999999999988763                       46788998         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-EEeccCCCCcccCCCCCeEeecCCceeeEEcc-----CC
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-----NG  183 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~  183 (408)
                         ..|.|++|+|+  |+.||+|+.||+|++||.++++.. ..+..|..        .|.       +++|.|     ..
T Consensus       158 ---~WVlcvawsPD--gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K--------~It-------~Lawep~hl~p~~  217 (480)
T KOG0271|consen  158 ---NWVLCVAWSPD--GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK--------WIT-------ALAWEPLHLVPPC  217 (480)
T ss_pred             ---cEEEEEEECCC--cchhhccccCCeEEEecCCCCCcccccccCccc--------cee-------EEeecccccCCCc
Confidence               77999999755  999999999999999999987653 33444322        343       566654     44


Q ss_pred             CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCC
Q 015363          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE  262 (408)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~  262 (408)
                      +.+            ++++.||.+++|| +      ..+.++..+ .+|...|+|+.|--+| ++++| .|++|++|+..
T Consensus       218 r~l------------as~skDg~vrIWd-~------~~~~~~~~l-sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~  276 (480)
T KOG0271|consen  218 RRL------------ASSSKDGSVRIWD-T------KLGTCVRTL-SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL  276 (480)
T ss_pred             cce------------ecccCCCCEEEEE-c------cCceEEEEe-ccCccceEEEEEcCCc-eEEecCCCceEEEEEcc
Confidence            444            9999999999999 3      234555554 8999999999997655 78888 89999999998


Q ss_pred             CCCceeeEeecCCCcccCCcCCeEEEEEc-----------CCC------------------------CceEEEEeCCCeE
Q 015363          263 ISNQSFNIVDVKPANMEDLTEVITSAEFH-----------PTH------------------------CNMLAYSSSKGSI  307 (408)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------p~~------------------------~~~l~s~~~dg~i  307 (408)
                      . +.+.+.       +.+|..+|+.++.+           |.+                        +..|++|+.|.++
T Consensus       277 d-G~~~r~-------lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl  348 (480)
T KOG0271|consen  277 D-GKLCRE-------LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL  348 (480)
T ss_pred             c-hhHHHh-------hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence            4 444433       78999999998876           333                        1359999999999


Q ss_pred             EEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeeccccc
Q 015363          308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR  386 (408)
Q Consensus       308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~  386 (408)
                      .+|+-...+   +|+..+.+|            +.-|+.+.||||+++||+++ |..|++||.++ |+.+.+|+||-+..
T Consensus       349 flW~p~~~k---kpi~rmtgH------------q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~V  412 (480)
T KOG0271|consen  349 FLWNPFKSK---KPITRMTGH------------QALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAV  412 (480)
T ss_pred             EEecccccc---cchhhhhch------------hhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhcccee
Confidence            999876554   333455555            68899999999999999997 89999999998 89999999999998


Q ss_pred             ceEEecCCCeee
Q 015363          387 PKVMHSSKNYFM  398 (408)
Q Consensus       387 ~~~~~~~~~~~~  398 (408)
                      +.+.-..+..++
T Consensus       413 YqvawsaDsRLl  424 (480)
T KOG0271|consen  413 YQVAWSADSRLL  424 (480)
T ss_pred             EEEEeccCccEE
Confidence            888776666654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-42  Score=274.72  Aligned_cols=330  Identities=66%  Similarity=1.039  Sum_probs=284.7

Q ss_pred             cccCcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCc
Q 015363           10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE   89 (408)
Q Consensus        10 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~   89 (408)
                      .+...+.|+|.|.|+..     ++..+-|.++.|..+|.+||||..+|+|.++.......                  .+
T Consensus         5 ~~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------------~e   61 (433)
T KOG1354|consen    5 GKNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------------GE   61 (433)
T ss_pred             Ccchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc------------------cc
Confidence            34567889999988743     66778899999999999999999999999998654321                  27


Q ss_pred             cceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEe
Q 015363           90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG  169 (408)
Q Consensus        90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  169 (408)
                      |++...++.|+++|+|+++++++.+|+.++|++..+...++..+.|.+|++|.+........ ..+...           
T Consensus        62 y~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~-~~~~~~-----------  129 (433)
T KOG1354|consen   62 YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKE-GYNLPE-----------  129 (433)
T ss_pred             eeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccc-cccccc-----------
Confidence            78899999999999999999999999999999988888999999999999999986543330 000000           


Q ss_pred             ecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE
Q 015363          170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  249 (408)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  249 (408)
                                  .                ...+.-..+++.. +...+......|++.+..+|...|++|.++.|+..++
T Consensus       130 ------------~----------------~~~~~~~~lr~p~-~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l  180 (433)
T KOG1354|consen  130 ------------E----------------GPPGTITSLRLPV-EGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL  180 (433)
T ss_pred             ------------c----------------CCCCccceeecee-eccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence                        0                0112223444444 5666667778888998899999999999999999999


Q ss_pred             EecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccccc
Q 015363          250 SADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE  329 (408)
Q Consensus       250 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  329 (408)
                      +++|-+|.+|+++-..+.+++++++|..+......|++..|+|...++|+..+..|+|++-|+|...+|++..+.++.++
T Consensus       181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            99999999999999999999999999999888899999999999889999999999999999999999999999999999


Q ss_pred             CCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeecee
Q 015363          330 APGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIH  404 (408)
Q Consensus       330 ~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  404 (408)
                      .+..+.+|.+..+.|.++.|+++|+||++-+.-+|++||++.+.+++.+++.|...+..+|++|++|++ +|+|.
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I-fdKFe  334 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI-FDKFE  334 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch-hheeE
Confidence            999999999999999999999999999999989999999988899999999999999999999999985 35443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-39  Score=268.41  Aligned_cols=258  Identities=16%  Similarity=0.274  Sum_probs=219.5

Q ss_pred             cCcccceeeecccCcCcccceeeccceEEEEECCC--CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCc
Q 015363           12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE   89 (408)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~   89 (408)
                      +....|+..++ .  ....+.+|.+.|.++.|+|.  +.-||||+.||++++|++++..                     
T Consensus       197 G~~kvW~~~~~-~--~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~---------------------  252 (459)
T KOG0272|consen  197 GLVKVWSVPQC-N--LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET---------------------  252 (459)
T ss_pred             CceeEeecCCc-c--eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc---------------------
Confidence            35567888776 2  23356789999999999996  6689999999999999998754                     


Q ss_pred             cceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEe
Q 015363           90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG  169 (408)
Q Consensus        90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  169 (408)
                        .+..+.+|.            ..|..++|+|+  |++|++++.|.+-++||++++......++|..        .|+ 
T Consensus       253 --~l~~l~gH~------------~RVs~VafHPs--G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~--------~v~-  307 (459)
T KOG0272|consen  253 --PLQDLEGHL------------ARVSRVAFHPS--GKFLGTASFDSTWRLWDLETKSELLLQEGHSK--------GVF-  307 (459)
T ss_pred             --chhhhhcch------------hhheeeeecCC--CceeeecccccchhhcccccchhhHhhccccc--------ccc-
Confidence              356789998            77999999766  99999999999999999999887666666533        344 


Q ss_pred             ecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE
Q 015363          170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  249 (408)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  249 (408)
                            .++|.+||..+            ++|+.|..-++|| ++.      +.++-. +.+|...|.+|+|+|+|-.||
T Consensus       308 ------~iaf~~DGSL~------------~tGGlD~~~RvWD-lRt------gr~im~-L~gH~k~I~~V~fsPNGy~lA  361 (459)
T KOG0272|consen  308 ------SIAFQPDGSLA------------ATGGLDSLGRVWD-LRT------GRCIMF-LAGHIKEILSVAFSPNGYHLA  361 (459)
T ss_pred             ------eeEecCCCcee------------eccCccchhheee-ccc------CcEEEE-ecccccceeeEeECCCceEEe
Confidence                  79999999998            9999999999999 544      444444 489999999999999999999


Q ss_pred             Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc
Q 015363          250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  328 (408)
Q Consensus       250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  328 (408)
                      +| .|++++|||++ ......+       +.+|..-|+.++|+|...++|++++.|++++||..++...+    +++.||
T Consensus       362 Tgs~Dnt~kVWDLR-~r~~ly~-------ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~----ksLaGH  429 (459)
T KOG0272|consen  362 TGSSDNTCKVWDLR-MRSELYT-------IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL----KSLAGH  429 (459)
T ss_pred             ecCCCCcEEEeeec-cccccee-------cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc----hhhcCC
Confidence            99 99999999999 4444433       78999999999999954499999999999999999998654    888888


Q ss_pred             cCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEE
Q 015363          329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWD  368 (408)
Q Consensus       329 ~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd  368 (408)
                      +            +.|.+++.+||+.+|++++ |+++++|.
T Consensus       430 e------------~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  430 E------------GKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             c------------cceEEEEeccCCceEEEeccCceeeecc
Confidence            5            7899999999999999997 89999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.7e-37  Score=238.47  Aligned_cols=269  Identities=17%  Similarity=0.283  Sum_probs=217.6

Q ss_pred             ceeecc-ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           31 EVQEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        31 ~~~h~~-~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .++|.+ .|+.+.+.|++++||+|+.. .|||||+.++...                     .+.++.+|.         
T Consensus        35 Tiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~---------------------Pv~t~e~h~---------   83 (311)
T KOG0315|consen   35 TIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN---------------------PVATFEGHT---------   83 (311)
T ss_pred             EEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC---------------------ceeEEeccC---------
Confidence            456765 59999999999999999865 8999999887642                     567899998         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|+++.|  ..+|.++++|++||+++|||++...+.+.++...         .|.       .+..+|+...|   
T Consensus        84 ---kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~s---------pVn-------~vvlhpnQteL---  139 (311)
T KOG0315|consen   84 ---KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNS---------PVN-------TVVLHPNQTEL---  139 (311)
T ss_pred             ---CceEEEEE--eecCeEEEecCCCceEEEEeccCcccchhccCCC---------Ccc-------eEEecCCcceE---
Confidence               77999999  5679999999999999999999977666655532         233       67888888887   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                               +++..+|.|++|| +..      ..|...+.......|+++++.|||.+++.+ ..|..++|++-......
T Consensus       140 ---------is~dqsg~irvWD-l~~------~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s  203 (311)
T KOG0315|consen  140 ---------ISGDQSGNIRVWD-LGE------NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS  203 (311)
T ss_pred             ---------EeecCCCcEEEEE-ccC------CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence                     9999999999999 433      223333345555789999999999999999 89999999997543333


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      .+.++  ..++.|.+.+..+.+||++ ++||+++.|.+++||+....-..   ...+++|            ..++.+++
T Consensus       204 ~l~P~--~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~~kl---e~~l~gh------------~rWvWdc~  265 (311)
T KOG0315|consen  204 ELEPV--HKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDFFKL---ELVLTGH------------QRWVWDCA  265 (311)
T ss_pred             cceEh--hheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCceee---EEEeecC------------CceEEeee
Confidence            33332  2378899999999999999 99999999999999999876111   1445555            58999999


Q ss_pred             EccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceE
Q 015363          349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKV  389 (408)
Q Consensus       349 ~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~  389 (408)
                      ||.||+||++|+ |+.+++|++.+ ++.++.+.+|.....+.
T Consensus       266 FS~dg~YlvTassd~~~rlW~~~~-~k~v~qy~gh~K~~vc~  306 (311)
T KOG0315|consen  266 FSADGEYLVTASSDHTARLWDLSA-GKEVRQYQGHHKAAVCV  306 (311)
T ss_pred             eccCccEEEecCCCCceeeccccc-CceeeecCCcccccEEE
Confidence            999999999995 79999999998 79999999997665444

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-37  Score=238.52  Aligned_cols=258  Identities=14%  Similarity=0.231  Sum_probs=214.0

Q ss_pred             cceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ...+|++.|+.++..+. ...++++++|.++.+|++.....                  +-...+..+.||+        
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------------~~G~~~r~~~GHs--------   63 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------------KYGVPVRRLTGHS--------   63 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc------------------ccCceeeeeeccc--------
Confidence            44689999999999987 56899999999999999876542                  1334567789998        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          ..|..+..+++  |++.++++.|+++++||+.+++..+.+..|...        |.       ++++++|.+.+  
T Consensus        64 ----H~v~dv~~s~d--g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d--------Vl-------sva~s~dn~qi--  120 (315)
T KOG0279|consen   64 ----HFVSDVVLSSD--GNFALSASWDGTLRLWDLATGESTRRFVGHTKD--------VL-------SVAFSTDNRQI--  120 (315)
T ss_pred             ----eEecceEEccC--CceEEeccccceEEEEEecCCcEEEEEEecCCc--------eE-------EEEecCCCcee--
Confidence                66999999654  889999999999999999999888888877543        43       79999999998  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccc-cccceEEEEeCCC--CCEEEEe-cCCeEEEEeCCCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSD--GETFISA-DDLRINLWNLEIS  264 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~  264 (408)
                                ++|+.|++|++|+        ..+.|..+.... +...|.|+.|+|+  ..+++++ .|++|++||+++ 
T Consensus       121 ----------vSGSrDkTiklwn--------t~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-  181 (315)
T KOG0279|consen  121 ----------VSGSRDKTIKLWN--------TLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-  181 (315)
T ss_pred             ----------ecCCCcceeeeee--------ecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-
Confidence                      9999999999999        234444444222 3789999999998  6788888 899999999994 


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      .+...       .+.+|.+.++.+.++||| .++++|+.||.+.+||++.++.+    +.+...             ..|
T Consensus       182 ~~l~~-------~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ysl~a~-------------~~v  236 (315)
T KOG0279|consen  182 CQLRT-------TFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YSLEAF-------------DIV  236 (315)
T ss_pred             cchhh-------ccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCcee----EeccCC-------------CeE
Confidence            33332       378899999999999999 99999999999999999998764    565554             689


Q ss_pred             EEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeee
Q 015363          345 SDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       345 ~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      .+++|+|+..+|+.+.+..|+|||+.+ +..+..++.
T Consensus       237 ~sl~fspnrywL~~at~~sIkIwdl~~-~~~v~~l~~  272 (315)
T KOG0279|consen  237 NSLCFSPNRYWLCAATATSIKIWDLES-KAVVEELKL  272 (315)
T ss_pred             eeEEecCCceeEeeccCCceEEEeccc-hhhhhhccc
Confidence            999999998888888877899999997 677776654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-38  Score=251.13  Aligned_cols=338  Identities=54%  Similarity=0.813  Sum_probs=279.1

Q ss_pred             cccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcccee
Q 015363           14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK   93 (408)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~   93 (408)
                      ...|+|.|||+.......+...+.|+++.|...|.|||+|...|+|.+|......                  .-+|++.
T Consensus         5 n~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~------------------~ceykf~   66 (460)
T COG5170           5 NEILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY------------------GCEYKFF   66 (460)
T ss_pred             hhhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc------------------ccchhhh
Confidence            4579999999998887778899999999999999999999999999999865443                  2378899


Q ss_pred             eeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCC
Q 015363           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS  173 (408)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  173 (408)
                      +.|++|+.+|+|+++++++.+|+.+.|+...+...++..+.|++|++|.+.......+.+.+....              
T Consensus        67 teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~--------------  132 (460)
T COG5170          67 TEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDS--------------  132 (460)
T ss_pred             hhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccc--------------
Confidence            999999999999999999999999999976566678889999999999998776555444433221              


Q ss_pred             ceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecC
Q 015363          174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD  253 (408)
Q Consensus       174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d  253 (408)
                         +. +|-+..+               .....+++.. +...+......+.+.+...|...++++.++.|...+++++|
T Consensus       133 ---~~-~~~~g~~---------------~s~~~l~lpr-ls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDd  192 (460)
T COG5170         133 ---FH-SPMGGPL---------------TSTKELLLPR-LSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADD  192 (460)
T ss_pred             ---cc-cccCCCc---------------CCHHHhhccc-ccccceEEEeccceeccccceeEeeeeeecCchheeeeccc
Confidence               11 1111111               0112222222 33333333345555556889999999999999999999999


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCC
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT  333 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  333 (408)
                      -+|.+|+++....++.+++++|..+......|++..|+|....+++..+..|.|++-|+|...+|+.+-+.++....+-.
T Consensus       193 LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~  272 (460)
T COG5170         193 LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD  272 (460)
T ss_pred             eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc
Confidence            99999999999999999999998888888889999999998889999999999999999999888877777777766777


Q ss_pred             ccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeecee
Q 015363          334 RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIH  404 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  404 (408)
                      ..+|.+..+.|.++.|+++|++|++.+.-+|++||++....++++++-|...+..++..|++|++ .|+|.
T Consensus       273 ~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai-fdkFe  342 (460)
T COG5170         273 VDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI-FDKFE  342 (460)
T ss_pred             chhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccce-eeeEE
Confidence            78888889999999999999999999989999999999999999999999999999999999985 35554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.7e-36  Score=248.89  Aligned_cols=268  Identities=19%  Similarity=0.341  Sum_probs=219.9

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ...+..|++++|+.+|.+||+|+.||.++||+..+..                        ...+..|.           
T Consensus       232 ~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------------------------~~tl~~Hk-----------  276 (524)
T KOG0273|consen  232 VPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------------------------ISTLGQHK-----------  276 (524)
T ss_pred             CCccCCcceEEecCCCCeEEEeecCcEEEEEecCchh------------------------hhhhhccC-----------
Confidence            4456789999999999999999999999999987664                        35677888           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       ++|.++.|+  ..|++|++++.|+++.+||..+++..+.+.++..+.               ..+.|-.+..+      
T Consensus       277 -gPI~slKWn--k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~---------------lDVdW~~~~~F------  332 (524)
T KOG0273|consen  277 -GPIFSLKWN--KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA---------------LDVDWQSNDEF------  332 (524)
T ss_pred             -CceEEEEEc--CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc---------------cceEEecCceE------
Confidence             889999995  558999999999999999999999999888875441               14667666664      


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             ++++.|+.|+++. +..      ..+..++ .+|.+.|.++.|+|.+.+|+++ +|++++||+..... +.. 
T Consensus       333 -------~ts~td~~i~V~k-v~~------~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~-  395 (524)
T KOG0273|consen  333 -------ATSSTDGCIHVCK-VGE------DRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVH-  395 (524)
T ss_pred             -------eecCCCceEEEEE-ecC------CCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc-chh-
Confidence                   8899999999987 422      3455555 7799999999999999999999 99999999987443 332 


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCC--------ceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHC--------NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA  342 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~--------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  342 (408)
                            .+..|...|..+.|+|.|+        ..+++++.|++|++||+..+..+    ..|..|            +.
T Consensus       396 ------~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~f~kH------------~~  453 (524)
T KOG0273|consen  396 ------DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----HTLMKH------------QE  453 (524)
T ss_pred             ------hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----EeeccC------------CC
Confidence                  2788999999999999763        47899999999999999998554    555555            57


Q ss_pred             eeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee
Q 015363          343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG  399 (408)
Q Consensus       343 ~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (408)
                      +|.+++|+|+|++||+|+ ||.|.+|+.++ ++.++.+.+..+ ...++.-..++.++
T Consensus       454 pVysvafS~~g~ylAsGs~dg~V~iws~~~-~~l~~s~~~~~~-Ifel~Wn~~G~kl~  509 (524)
T KOG0273|consen  454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKT-GKLVKSYQGTGG-IFELCWNAAGDKLG  509 (524)
T ss_pred             ceEEEEecCCCcEEEecCCCCeeEeccccc-hheeEeecCCCe-EEEEEEcCCCCEEE
Confidence            899999999999999997 79999999998 799999988655 34444445555543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.1e-35  Score=231.16  Aligned_cols=281  Identities=17%  Similarity=0.313  Sum_probs=223.6

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|.+.|.++.|++|.++|++++.||.+.|||.-+....                       ..+.-..         
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----------------------haipl~s---------   97 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----------------------HAIPLPS---------   97 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----------------------eEEecCc---------
Confidence            34689999999999999999999999999999997655421                       1122222         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc------EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK------VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  183 (408)
                         ..|...+|+|+  |+++|+|+.|+...||++.+.+      ..+.+..|        .+.+.       ++.|.+|+
T Consensus        98 ---~WVMtCA~sPS--g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH--------tgylS-------cC~f~dD~  157 (343)
T KOG0286|consen   98 ---SWVMTCAYSPS--GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH--------TGYLS-------CCRFLDDN  157 (343)
T ss_pred             ---eeEEEEEECCC--CCeEEecCcCceeEEEecccccccccceeeeeecCc--------cceeE-------EEEEcCCC
Confidence               66999999877  8899999999999999998552      22222222        12222       56677766


Q ss_pred             CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-cCCeEEEEeC
Q 015363          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNL  261 (408)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~  261 (408)
                      ..             ++++.|.+..+|| +..      ++....+ .+|.+.|.+++++| +++.|++| -|+..++||+
T Consensus       158 ~i-------------lT~SGD~TCalWD-ie~------g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~  216 (343)
T KOG0286|consen  158 HI-------------LTGSGDMTCALWD-IET------GQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV  216 (343)
T ss_pred             ce-------------EecCCCceEEEEE-ccc------ceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence            54             8999999999999 433      4444554 89999999999999 89999999 8999999999


Q ss_pred             CCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363          262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                      +. ..+.+.       +.+|...|.+++|.|+| .-|++|+.|++.++||+|....+    ..+.....          .
T Consensus       217 R~-~~c~qt-------F~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~----a~ys~~~~----------~  273 (343)
T KOG0286|consen  217 RS-GQCVQT-------FEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQEL----AVYSHDSI----------I  273 (343)
T ss_pred             cC-cceeEe-------ecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEE----eeeccCcc----------c
Confidence            94 466654       78999999999999999 99999999999999999998654    34442211          3


Q ss_pred             ceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeee---eceeeec
Q 015363          342 ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGL---DNIHTLY  407 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~  407 (408)
                      .+|++++||-.|++|++| .|.++.+||.=. ++.+-.+.+|+...+++...-++..++-   |.+.+||
T Consensus       274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk-~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLK-GERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW  342 (343)
T ss_pred             CCceeEEEcccccEEEeeecCCceeEeeccc-cceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence            689999999999999998 579999999987 7999999999999999987666665533   6666655

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.4e-35  Score=262.40  Aligned_cols=264  Identities=18%  Similarity=0.317  Sum_probs=213.6

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCC-Ccccccccccc-------cccCCCccceeeeeccCCcccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG-GQRRDLEMMDY-------SMSRHPEFRYKTEFQSHEPEFDYL  106 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~-------~~~~~p~~~~~~~~~~h~~~~~~~  106 (408)
                      ...++|..|++|+.+||.|-.|..|++|.+....... +....+...+.       ..--.........+.||.      
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------  451 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------  451 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence            3569999999999999999999999999988532110 00111111110       000111122234477888      


Q ss_pred             cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                            ++|....|+|+  .++|++++.|+++|+|.+.+..+....++|..|        |+       .+.|+|-|-+.
T Consensus       452 ------GPVyg~sFsPd--~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P--------Vw-------dV~F~P~GyYF  508 (707)
T KOG0263|consen  452 ------GPVYGCSFSPD--RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP--------VW-------DVQFAPRGYYF  508 (707)
T ss_pred             ------Cceeeeeeccc--ccceeeccCCcceeeeecccceeEEEecCCCcc--------ee-------eEEecCCceEE
Confidence                  88999999866  779999999999999999999999888887554        66       68899999887


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                  ++++.|++-++|. ...      ..+.+.+ .+|...|.|++|+|+..++++| .|.+|++||+. .+
T Consensus       509 ------------atas~D~tArLWs-~d~------~~PlRif-aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~-~G  567 (707)
T KOG0263|consen  509 ------------ATASHDQTARLWS-TDH------NKPLRIF-AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS-TG  567 (707)
T ss_pred             ------------EecCCCceeeeee-ccc------CCchhhh-cccccccceEEECCcccccccCCCCceEEEEEcC-CC
Confidence                        9999999999999 322      5566665 8999999999999999999999 99999999999 45


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      ...++       +.+|.++|.+++|+|+| ++|++|+.|+.|++||+.+++.+    ..+.+|            .+.|.
T Consensus       568 ~~VRi-------F~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v----~~l~~H------------t~ti~  623 (707)
T KOG0263|consen  568 NSVRI-------FTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSLV----KQLKGH------------TGTIY  623 (707)
T ss_pred             cEEEE-------ecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcch----hhhhcc------------cCcee
Confidence            55555       78999999999999999 99999999999999999999765    677777            48899


Q ss_pred             EEEEccCCCEEEEeC-CCeEEEEECCCC
Q 015363          346 DIKFARNGRHILSRD-YMTLKLWDINMD  372 (408)
Q Consensus       346 ~~~~spdg~~l~s~~-d~~v~~wd~~~~  372 (408)
                      ++.||.||..||+|+ |++|++||+...
T Consensus       624 SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  624 SLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999999999985 899999999763

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-34  Score=225.77  Aligned_cols=268  Identities=13%  Similarity=0.243  Sum_probs=202.1

Q ss_pred             Ccccceeeec---ccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCc
Q 015363           13 QPLEWKFSQV---FGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE   89 (408)
Q Consensus        13 ~~~~w~~~~~---~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~   89 (408)
                      ..+.|++..-   ||.. .-...+|...|+.+..++||++.++++.|+++++||+.+++.                    
T Consensus        39 ~ii~W~L~~dd~~~G~~-~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~--------------------   97 (315)
T KOG0279|consen   39 TIIVWKLTSDDIKYGVP-VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES--------------------   97 (315)
T ss_pred             EEEEEEeccCccccCce-eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcE--------------------
Confidence            3456777753   2221 113457999999999999999999999999999999998753                    


Q ss_pred             cceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEe
Q 015363           90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG  169 (408)
Q Consensus        90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  169 (408)
                         ...|.+|.            ..|.+++|+|+  ...+++|++|++|++|++.............       .+.|. 
T Consensus        98 ---t~~f~GH~------------~dVlsva~s~d--n~qivSGSrDkTiklwnt~g~ck~t~~~~~~-------~~WVs-  152 (315)
T KOG0279|consen   98 ---TRRFVGHT------------KDVLSVAFSTD--NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSH-------REWVS-  152 (315)
T ss_pred             ---EEEEEecC------------CceEEEEecCC--CceeecCCCcceeeeeeecccEEEEEecCCC-------cCcEE-
Confidence               46799999            67999999654  7899999999999999998765444333321       22444 


Q ss_pred             ecCCceeeEEccCC--CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCE
Q 015363          170 SHVSAIPKSYMANG--GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET  247 (408)
Q Consensus       170 ~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  247 (408)
                            ++.|+|+.  ..            +++++.|++|++|| +.+.+..      .. +.+|.+.++.++++|||.+
T Consensus       153 ------cvrfsP~~~~p~------------Ivs~s~DktvKvWn-l~~~~l~------~~-~~gh~~~v~t~~vSpDGsl  206 (315)
T KOG0279|consen  153 ------CVRFSPNESNPI------------IVSASWDKTVKVWN-LRNCQLR------TT-FIGHSGYVNTVTVSPDGSL  206 (315)
T ss_pred             ------EEEEcCCCCCcE------------EEEccCCceEEEEc-cCCcchh------hc-cccccccEEEEEECCCCCE
Confidence                  79999985  44            49999999999999 6553332      22 4789999999999999999


Q ss_pred             EEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccc
Q 015363          248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE  326 (408)
Q Consensus       248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  326 (408)
                      .++| .||.+.+||++.++.+..         -+|...|.+++|+|+. ..|+.+ .+..|+|||+.++..+    ..+.
T Consensus       207 casGgkdg~~~LwdL~~~k~lys---------l~a~~~v~sl~fspnr-ywL~~a-t~~sIkIwdl~~~~~v----~~l~  271 (315)
T KOG0279|consen  207 CASGGKDGEAMLWDLNEGKNLYS---------LEAFDIVNSLCFSPNR-YWLCAA-TATSIKIWDLESKAVV----EELK  271 (315)
T ss_pred             EecCCCCceEEEEEccCCceeEe---------ccCCCeEeeEEecCCc-eeEeec-cCCceEEEeccchhhh----hhcc
Confidence            9999 999999999996655432         3578889999999997 666665 4566999999998655    2222


Q ss_pred             cccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECC
Q 015363          327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDIN  370 (408)
Q Consensus       327 ~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~  370 (408)
                      ......   ......-.-.+++|++||..|++| .|+.|++|.+.
T Consensus       272 ~d~~g~---s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  272 LDGIGP---SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cccccc---ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            211000   001111235678999999999999 68999999985

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-35  Score=238.47  Aligned_cols=264  Identities=15%  Similarity=0.272  Sum_probs=223.4

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|..+|+.+-|+|+-.++++++.|++|++||..+++                       +...++||+          
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-----------------------~e~~LrGHt----------  150 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE-----------------------LERSLRGHT----------  150 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchh-----------------------hhhhhhccc----------
Confidence            35699999999999999999999999999999999876                       357899999          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                        +.|.+|+|.  ..|.++++++.|=.+++||..+ .++.+....+.+.        +.       ++.+.|.|..+   
T Consensus       151 --~sv~di~~~--a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~--------vS-------~V~f~P~gd~i---  208 (406)
T KOG0295|consen  151 --DSVFDISFD--ASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHG--------VS-------SVFFLPLGDHI---  208 (406)
T ss_pred             --cceeEEEEe--cCccEEEecCCccchhheeHHHHHHHHHHhcCcccc--------ee-------eEEEEecCCee---
Confidence              779999995  4589999999999999999987 3344433333321        22       68899999887   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                               ++++.|.+|+.|+ +      ..+.|++++ .+|...|+.++.+.||.++|++ .|.+|++|-+.+ +++.
T Consensus       209 ---------lS~srD~tik~We-~------~tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k  270 (406)
T KOG0295|consen  209 ---------LSCSRDNTIKAWE-C------DTGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCK  270 (406)
T ss_pred             ---------eecccccceeEEe-c------ccceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEecc-chhh
Confidence                     9999999999999 4      336777776 8999999999999999999999 899999999994 4333


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCC--------------CceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCc
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTH--------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  334 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~--------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  334 (408)
                      ..       +..|.-+|-+++|.|..              .+++.+++.|++|++||+.++..+    .++.+|.     
T Consensus       271 ~~-------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL----~tL~ghd-----  334 (406)
T KOG0295|consen  271 AE-------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL----FTLVGHD-----  334 (406)
T ss_pred             hh-------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE----EEEeccc-----
Confidence            22       67899999999998731              259999999999999999999654    6777774     


Q ss_pred             cccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEe
Q 015363          335 SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMH  391 (408)
Q Consensus       335 ~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~  391 (408)
                             .+|..++|+|.|+||+++. |+++++||+++ +++.++++.|+.....+..
T Consensus       335 -------nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~-~~cmk~~~ah~hfvt~lDf  384 (406)
T KOG0295|consen  335 -------NWVRGVAFSPGGKYILSCADDKTLRVWDLKN-LQCMKTLEAHEHFVTSLDF  384 (406)
T ss_pred             -------ceeeeeEEcCCCeEEEEEecCCcEEEEEecc-ceeeeccCCCcceeEEEec
Confidence                   7999999999999999985 69999999998 8999999999998888864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.2e-33  Score=218.69  Aligned_cols=263  Identities=18%  Similarity=0.296  Sum_probs=213.2

Q ss_pred             CcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (408)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   92 (408)
                      ..+.|+-...-   +.....-...+|-.++|+|+|+++|+|+.|+...||++.+....                 ...+.
T Consensus        78 klIvWDs~Ttn---K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~-----------------g~~~v  137 (343)
T KOG0286|consen   78 KLIVWDSFTTN---KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE-----------------GNVRV  137 (343)
T ss_pred             eEEEEEccccc---ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc-----------------cccee
Confidence            44556655421   11122234678999999999999999999999999999865321                 12234


Q ss_pred             eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecC
Q 015363           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (408)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  172 (408)
                      ...+.+|+            +.+.|..|.+   ...|++++-|.+..+||+++++....+..|..        .|.    
T Consensus       138 ~r~l~gHt------------gylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~g--------DV~----  190 (343)
T KOG0286|consen  138 SRELAGHT------------GYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTG--------DVM----  190 (343)
T ss_pred             eeeecCcc------------ceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcc--------cEE----
Confidence            56789999            7799999963   34899999999999999999999998888743        355    


Q ss_pred             CceeeEEcc-CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe
Q 015363          173 SAIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA  251 (408)
Q Consensus       173 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  251 (408)
                         ++.++| +++..            ++|+-|+..++|| ++.      ..+++.+ .+|...|++++|.|+|.-|++|
T Consensus       191 ---slsl~p~~~ntF------------vSg~cD~~aklWD-~R~------~~c~qtF-~ghesDINsv~ffP~G~afatG  247 (343)
T KOG0286|consen  191 ---SLSLSPSDGNTF------------VSGGCDKSAKLWD-VRS------GQCVQTF-EGHESDINSVRFFPSGDAFATG  247 (343)
T ss_pred             ---EEecCCCCCCeE------------Eecccccceeeee-ccC------cceeEee-cccccccceEEEccCCCeeeec
Confidence               678888 77776            9999999999999 433      5677777 9999999999999999999999


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC
Q 015363          252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  330 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  330 (408)
                       +|++.++||++. .+.+.++.     -.....+|++++|+..| ++|.+|..|..+.+||.-.++.+    ..+.+|+ 
T Consensus       248 SDD~tcRlyDlRa-D~~~a~ys-----~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~v----g~L~GHe-  315 (343)
T KOG0286|consen  248 SDDATCRLYDLRA-DQELAVYS-----HDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERV----GVLAGHE-  315 (343)
T ss_pred             CCCceeEEEeecC-CcEEeeec-----cCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccceE----EEeeccC-
Confidence             999999999994 45555432     23345679999999999 99999999999999999888665    6777775 


Q ss_pred             CCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEE
Q 015363          331 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWD  368 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd  368 (408)
                                 ..|.++..+|||.-|++|+ |.+++||.
T Consensus       316 -----------NRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  316 -----------NRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             -----------CeeEEEEECCCCcEEEecchhHheeecC
Confidence                       7899999999999999998 89999994

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.9e-33  Score=218.75  Aligned_cols=278  Identities=15%  Similarity=0.208  Sum_probs=218.4

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|+.+.|+|+|.+||||+.|..|.||++.+...                      -...+++|.          
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------------N~~~lkgHs----------   90 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------------NFWVLKGHS----------   90 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------------ceeeecccc----------
Confidence            357999999999999999999999999999999765543                      244677898          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        +.|..+.|.+  |++.+++++.|.+|+.||++++++...++.+..-        +.       .+.-..-|..+    
T Consensus        91 --gAVM~l~~~~--d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~--------vN-------s~~p~rrg~~l----  147 (338)
T KOG0265|consen   91 --GAVMELHGMR--DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF--------VN-------SLDPSRRGPQL----  147 (338)
T ss_pred             --ceeEeeeecc--CCCEEEEecCCceEEEEecccceeeehhccccce--------ee-------ecCccccCCeE----
Confidence              8899999964  5889999999999999999999988877776432        11       12212223332    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                             +.+++.|+++++|| ++..+.      .++  ......++++.|..++..+.+| -|+.|++||++.. ....
T Consensus       148 -------v~SgsdD~t~kl~D-~R~k~~------~~t--~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~~  210 (338)
T KOG0265|consen  148 -------VCSGSDDGTLKLWD-IRKKEA------IKT--FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGLY  210 (338)
T ss_pred             -------EEecCCCceEEEEe-ecccch------hhc--cccceeEEEEEecccccceeeccccCceeeeccccC-cceE
Confidence                   57899999999999 554322      222  2234678999999999999998 8999999999843 3443


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      +       +.+|.+.|+.+..+|+| .++.+-+.|.++++||++....-.+.++.++++...        ..-....++|
T Consensus       211 ~-------lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn--------feknlL~csw  274 (338)
T KOG0265|consen  211 T-------LSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN--------FEKNLLKCSW  274 (338)
T ss_pred             E-------eecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhh--------hhhhcceeec
Confidence            3       78999999999999999 999999999999999999876655666777777321        0123467899


Q ss_pred             ccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCee
Q 015363          350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYF  397 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (408)
                      +|+++++.+|+ |..+++||... ...+..++||.+....+..--...+
T Consensus       275 sp~~~~i~ags~dr~vyvwd~~~-r~~lyklpGh~gsvn~~~Fhp~e~i  322 (338)
T KOG0265|consen  275 SPNGTKITAGSADRFVYVWDTTS-RRILYKLPGHYGSVNEVDFHPTEPI  322 (338)
T ss_pred             cCCCCccccccccceEEEeeccc-ccEEEEcCCcceeEEEeeecCCCcE
Confidence            99999999995 89999999987 6899999999998877764333443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.2e-34  Score=235.14  Aligned_cols=252  Identities=15%  Similarity=0.268  Sum_probs=208.1

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|.++|.++.|+++|.++++|+.+|.|++|+..-+.                        +..+++|..          
T Consensus       135 QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn------------------------Vk~~~ahh~----------  180 (464)
T KOG0284|consen  135 QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN------------------------VKIIQAHHA----------  180 (464)
T ss_pred             hhhcccceeEEEccCCCEEEEcCCCceEEecccchhh------------------------hHHhhHhhh----------
Confidence            4699999999999999999999999999999965443                        345565542          


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       ..|++++|+|.  ++.|++++.||+|+|||....+...++..+.-.        +.       ++.|+|....+     
T Consensus       181 -eaIRdlafSpn--DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwd--------Vk-------svdWHP~kgLi-----  237 (464)
T KOG0284|consen  181 -EAIRDLAFSPN--DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWD--------VK-------SVDWHPTKGLI-----  237 (464)
T ss_pred             -hhhheeccCCC--CceeEEecCCCeEEEEeccCCchhheeccCCCC--------cc-------eeccCCcccee-----
Confidence             67999999864  679999999999999999988777766665432        22       78999999988     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             ++++.|..|++||       ...+.|+..+ .+|...|..+.|+|++++|+++ .|..++++|+++.+...  
T Consensus       238 -------asgskDnlVKlWD-------prSg~cl~tl-h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~--  300 (464)
T KOG0284|consen  238 -------ASGSKDNLVKLWD-------PRSGSCLATL-HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF--  300 (464)
T ss_pred             -------EEccCCceeEeec-------CCCcchhhhh-hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH--
Confidence                   9999999999999       4456777775 8999999999999999999999 89999999999544443  


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                            .+.+|...|+++.|+|-.+.+|.+|+.||.|..|.+...+.+    ..+           -.+|...|++++|+
T Consensus       301 ------~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~----~~i-----------~~AHd~~iwsl~~h  359 (464)
T KOG0284|consen  301 ------TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL----GEI-----------PPAHDGEIWSLAYH  359 (464)
T ss_pred             ------HhhcchhhheeeccccccccceeeccCCCceEEEeccccccc----cCC-----------Ccccccceeeeecc
Confidence                  278899999999999999899999999999999998743222    221           13456899999999


Q ss_pred             cCCCEEEEeC-CCeEEEEECCCCCCceee
Q 015363          351 RNGRHILSRD-YMTLKLWDINMDSGPVAT  378 (408)
Q Consensus       351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~  378 (408)
                      |-|..|++|+ |.++++|.-.-++.....
T Consensus       360 PlGhil~tgsnd~t~rfw~r~rp~d~~~~  388 (464)
T KOG0284|consen  360 PLGHILATGSNDRTVRFWTRNRPGDKNAD  388 (464)
T ss_pred             ccceeEeecCCCcceeeeccCCCCCcccc
Confidence            9999999997 799999987655544433

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.1e-33  Score=246.91  Aligned_cols=205  Identities=18%  Similarity=0.259  Sum_probs=181.2

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|.++|..+.|+|+.++|++++.|++||+|.+.+..+                       +..++||.         
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-----------------------~V~y~GH~---------  493 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-----------------------LVIYKGHL---------  493 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeeccccee-----------------------EEEecCCC---------
Confidence            3578999999999999999999999999999999987763                       56788999         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         .+|.++.|+|.  |-+||+++.|++-++|.....+..+++..+...        +.       ++.|+|+..++   
T Consensus       494 ---~PVwdV~F~P~--GyYFatas~D~tArLWs~d~~~PlRifaghlsD--------V~-------cv~FHPNs~Y~---  550 (707)
T KOG0263|consen  494 ---APVWDVQFAPR--GYYFATASHDQTARLWSTDHNKPLRIFAGHLSD--------VD-------CVSFHPNSNYV---  550 (707)
T ss_pred             ---cceeeEEecCC--ceEEEecCCCceeeeeecccCCchhhhcccccc--------cc-------eEEECCccccc---
Confidence               88999999866  999999999999999999998888888777543        22       68999999998   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                               ++|+.|.++++|| +.      .+..++.+ .+|..+|.+++|+|+|++|++| .|+.|.+||+..+....
T Consensus       551 ---------aTGSsD~tVRlWD-v~------~G~~VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~  613 (707)
T KOG0263|consen  551 ---------ATGSSDRTVRLWD-VS------TGNSVRIF-TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK  613 (707)
T ss_pred             ---------ccCCCCceEEEEE-cC------CCcEEEEe-cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh
Confidence                     9999999999999 43      35556776 8999999999999999999999 99999999999544433


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                              .+.+|.+.|.++.|+.+| .+||+|+.|.+|++||+..-
T Consensus       614 --------~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  614 --------QLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             --------hhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhh
Confidence                    268899999999999999 99999999999999998754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.7e-32  Score=238.62  Aligned_cols=284  Identities=16%  Similarity=0.274  Sum_probs=218.1

Q ss_pred             ccCcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcc
Q 015363           11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (408)
Q Consensus        11 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~   90 (408)
                      .++.+.|+...   |.-...+.+|...|+|++++|||+++|||+.||.|+|||...+-                      
T Consensus       329 lgQLlVweWqs---EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf----------------------  383 (893)
T KOG0291|consen  329 LGQLLVWEWQS---ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF----------------------  383 (893)
T ss_pred             cceEEEEEeec---cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce----------------------
Confidence            34566676653   22233456899999999999999999999999999999987664                      


Q ss_pred             ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEee
Q 015363           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (408)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  170 (408)
                       +..+|..|+            +.|+.+.|+..  |..+++++.||+|+.||+...+.-+++..+...         .. 
T Consensus       384 -C~vTFteHt------------s~Vt~v~f~~~--g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~---------Qf-  438 (893)
T KOG0291|consen  384 -CFVTFTEHT------------SGVTAVQFTAR--GNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI---------QF-  438 (893)
T ss_pred             -EEEEeccCC------------CceEEEEEEec--CCEEEEeecCCeEEeeeecccceeeeecCCCce---------ee-
Confidence             457899999            88999999755  789999999999999999998887777665432         11 


Q ss_pred             cCCceeeEEccCCCeeecccccccCccccCCCCCc-eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE
Q 015363          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS-SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  249 (408)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  249 (408)
                          .+++..|.|..+            ++|+.|. .|.+|+ +..      ++.+.. +.+|.++|.+++|+|++..|+
T Consensus       439 ----scvavD~sGelV------------~AG~~d~F~IfvWS-~qT------GqllDi-LsGHEgPVs~l~f~~~~~~La  494 (893)
T KOG0291|consen  439 ----SCVAVDPSGELV------------CAGAQDSFEIFVWS-VQT------GQLLDI-LSGHEGPVSGLSFSPDGSLLA  494 (893)
T ss_pred             ----eEEEEcCCCCEE------------EeeccceEEEEEEE-eec------Ceeeeh-hcCCCCcceeeEEccccCeEE
Confidence                167888888876            6776664 689999 433      333333 599999999999999999999


Q ss_pred             Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc
Q 015363          250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  328 (408)
Q Consensus       250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  328 (408)
                      ++ .|.+|++||+-......+.++        +...+..++|+|+| ..+|+++-||.|.+||...+...    ..+.+.
T Consensus       495 S~SWDkTVRiW~if~s~~~vEtl~--------i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~----~~Idgr  561 (893)
T KOG0291|consen  495 SGSWDKTVRIWDIFSSSGTVETLE--------IRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQV----GSIDGR  561 (893)
T ss_pred             eccccceEEEEEeeccCceeeeEe--------eccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceee----ccccch
Confidence            99 899999999985544444432        45668999999999 99999999999999999877543    222222


Q ss_pred             cCC----CCcccc----ccccceeEEEEEccCCCEEEEeCC-CeEEEEECCCCCCceeeeeec
Q 015363          329 EAP----GTRSFF----TEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       329 ~~~----~~~~~~----~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      ...    .....+    ......++.+++|+||.+|++|+. +.|++|++.+ +..++.++..
T Consensus       562 kD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~-~vllkkfqiS  623 (893)
T KOG0291|consen  562 KDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE-GVLLKKFQIS  623 (893)
T ss_pred             hhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch-hheeeeEEec
Confidence            110    000011    112346899999999999999875 9999999997 6888877654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=6.5e-31  Score=222.49  Aligned_cols=307  Identities=13%  Similarity=0.219  Sum_probs=215.1

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec---cCCccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ---SHEPEFDYLKSL  109 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~h~~~~~~~~~~  109 (408)
                      .|..-|+|+.|+|||.++|+++.||.|.|||=.+++.                       +..+.   +|.         
T Consensus       188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~-----------------------vg~l~~~~aHk---------  235 (603)
T KOG0318|consen  188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK-----------------------VGELEDSDAHK---------  235 (603)
T ss_pred             ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE-----------------------EEEecCCCCcc---------
Confidence            6889999999999999999999999999999887763                       34444   677         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc-----ccCCCCCeEeecC-CceeeEEccCC
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE-----KAAGNGPIFGSHV-SAIPKSYMANG  183 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~-~~~~~~~~~~~  183 (408)
                         +.|.+++|+|+  ++.|++++.|.+++|||+.+.++.+.+.......     ..-++..+...+. ..+..--..++
T Consensus       236 ---GsIfalsWsPD--s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~  310 (603)
T KOG0318|consen  236 ---GSIFALSWSPD--STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP  310 (603)
T ss_pred             ---ccEEEEEECCC--CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence               77999999765  8899999999999999999988877665543310     0011111211111 11111111112


Q ss_pred             Ceeecccccc----------cCccccCCCCCceeeeceeeeccccc----------------------------------
Q 015363          184 GCGERNFGCA----------SNDSSFPPGGVSSLRLPVVVTSQETN----------------------------------  219 (408)
Q Consensus       184 ~~l~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~~----------------------------------  219 (408)
                      ..+..+.|+.          +..++++++.||.|.-|+ .......                                  
T Consensus       311 ~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~-~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~  389 (603)
T KOG0318|consen  311 SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD-SGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVI  389 (603)
T ss_pred             ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe-cCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEE
Confidence            2222222222          223459999999999998 3221100                                  


Q ss_pred             --------------cccccc----------------e--eeccc--------cccceEEEEeCCCCCEEEEe-cCCeEEE
Q 015363          220 --------------LVAGCR----------------R--IYAHA--------HDYHINSISNNSDGETFISA-DDLRINL  258 (408)
Q Consensus       220 --------------~~~~~~----------------~--~~~~~--------~~~~v~~i~~~~~~~~l~~~-~d~~i~i  258 (408)
                                    ...++.                .  .++..        -.....+++++|++..++.| .|+.|++
T Consensus       390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhv  469 (603)
T KOG0318|consen  390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHV  469 (603)
T ss_pred             ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEE
Confidence                          000000                0  00010        11234578999999999999 9999999


Q ss_pred             EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc
Q 015363          259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT  338 (408)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (408)
                      |.+......-..      .+..|...|++++|+|++ .+||+|...+.+.+||+.+....   ...            +.
T Consensus       470 ysl~g~~l~ee~------~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~~---~~~------------w~  527 (603)
T KOG0318|consen  470 YSLSGDELKEEA------KLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREVK---TNR------------WA  527 (603)
T ss_pred             EEecCCccccee------eeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCcee---cce------------ee
Confidence            999843322211      256799999999999999 99999999999999999887431   011            34


Q ss_pred             cccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee
Q 015363          339 EIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG  399 (408)
Q Consensus       339 ~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (408)
                      -|++.|.+++|+|+.+++|+|+ |..|.+|+++.+.+.+.....|....+.+..+.++.++.
T Consensus       528 FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvS  589 (603)
T KOG0318|consen  528 FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVS  589 (603)
T ss_pred             eeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEe
Confidence            4678999999999999999998 899999999988888888888988888887777777664

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.4e-32  Score=222.05  Aligned_cols=248  Identities=14%  Similarity=0.280  Sum_probs=205.9

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      .+|.++|.|+++.|...+|++|+.|++|+|||+.++.                       +..++.||.           
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----------------------LkltltGhi-----------  193 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----------------------LKLTLTGHI-----------  193 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----------------------EEEeecchh-----------
Confidence            4799999999999999999999999999999999886                       457889998           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       ..|..+++++.  ..++++++.|+.|+.||++..+.++...++..        .|+       ++..+|.-..+     
T Consensus       194 -~~vr~vavS~r--HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS--------~V~-------~L~lhPTldvl-----  250 (460)
T KOG0285|consen  194 -ETVRGVAVSKR--HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS--------GVY-------CLDLHPTLDVL-----  250 (460)
T ss_pred             -heeeeeeeccc--CceEEEecCCCeeEEEechhhhhHHHhccccc--------eeE-------EEeccccceeE-----
Confidence             77999999876  44999999999999999999988776666543        355       67888888887     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             ++++.|.++++|| ++..      ..+.. +.+|...|..+.+.|....+++| .|++|++||++.++.... 
T Consensus       251 -------~t~grDst~RvWD-iRtr------~~V~~-l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t-  314 (460)
T KOG0285|consen  251 -------VTGGRDSTIRVWD-IRTR------ASVHV-LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT-  314 (460)
T ss_pred             -------EecCCcceEEEee-eccc------ceEEE-ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe-
Confidence                   9999999999999 5442      22333 48999999999999999999999 899999999996555443 


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                             +..|...|++++.+|.. ..||+++.| .|+-|++..+..+    ..+.+|            ...|+.++..
T Consensus       315 -------lt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~f~----~nlsgh------------~~iintl~~n  369 (460)
T KOG0285|consen  315 -------LTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEFL----QNLSGH------------NAIINTLSVN  369 (460)
T ss_pred             -------eecccceeeEEecCCch-hhhhccCCc-cceeccCCccchh----hccccc------------cceeeeeeec
Confidence                   57799999999999999 889998876 5999999988665    445555            5789999998


Q ss_pred             cCCCEEEEeCC-CeEEEEECCCCCCceeee
Q 015363          351 RNGRHILSRDY-MTLKLWDINMDSGPVATF  379 (408)
Q Consensus       351 pdg~~l~s~~d-~~v~~wd~~~~~~~~~~~  379 (408)
                      .|| ++++|+| |.+.+||.++ +...+..
T Consensus       370 sD~-v~~~G~dng~~~fwdwks-g~nyQ~~  397 (460)
T KOG0285|consen  370 SDG-VLVSGGDNGSIMFWDWKS-GHNYQRG  397 (460)
T ss_pred             cCc-eEEEcCCceEEEEEecCc-Ccccccc
Confidence            876 5566655 9999999997 5555444

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.4e-33  Score=233.26  Aligned_cols=278  Identities=20%  Similarity=0.282  Sum_probs=221.2

Q ss_pred             ccceeeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           29 GEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        29 ~~~~~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      ....+|+..|+++.|.| .+.+|++|+.|+.|+||++-..                      .+++++|.+|.       
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~----------------------~~~lrtf~gH~-------  258 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD----------------------RRCLRTFKGHR-------  258 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC----------------------cceehhhhcch-------
Confidence            34568999999999999 7999999999999999998753                      23678999999       


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                           .+|.+++|+  .+|..|++++.|+.|++||+++|++...+.....+                .++.+.|++..+ 
T Consensus       259 -----k~Vrd~~~s--~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~----------------~cvkf~pd~~n~-  314 (503)
T KOG0282|consen  259 -----KPVRDASFN--NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVP----------------TCVKFHPDNQNI-  314 (503)
T ss_pred             -----hhhhhhhcc--ccCCeeeeeecceeeeeeccccceEEEEEecCCCc----------------eeeecCCCCCcE-
Confidence                 889999996  45899999999999999999999998877664332                278999998444 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                                +++|+.|+.|+.|| ++..+      .++.+ ..|-+.|..+.|-++++.++++ +|+.++||+.+.+-.
T Consensus       315 ----------fl~G~sd~ki~~wD-iRs~k------vvqeY-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~  376 (503)
T KOG0282|consen  315 ----------FLVGGSDKKIRQWD-IRSGK------VVQEY-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP  376 (503)
T ss_pred             ----------EEEecCCCcEEEEe-ccchH------HHHHH-HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence                      58999999999999 65533      33343 7788999999999999999999 999999999985443


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      ...+       ...+.-.+.++..+|++ .++++-+.|..|.++.+...-.. ..-+.+++|...          +.-..
T Consensus       377 ik~i-------~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~-nkkK~feGh~va----------Gys~~  437 (503)
T KOG0282|consen  377 IKNI-------ADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRL-NKKKRFEGHSVA----------GYSCQ  437 (503)
T ss_pred             chhh-------cchhhccCcceecCCCC-CeehhhccCceEEEEeccccccc-CHhhhhcceecc----------Cceee
Confidence            3322       12223345689999999 99999999999999987654222 222567777432          45567


Q ss_pred             EEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc-cceEEecCCCee
Q 015363          347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL-RPKVMHSSKNYF  397 (408)
Q Consensus       347 ~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  397 (408)
                      +.|||||.+|++|+ ||.+.+||.++ -+++..++.|.+. ....+.+.....
T Consensus       438 v~fSpDG~~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~ci~v~wHP~e~Sk  489 (503)
T KOG0282|consen  438 VDFSPDGRTLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPCIGVDWHPVEPSK  489 (503)
T ss_pred             EEEcCCCCeEEeecCCccEEEeechh-hhhhhccccCCcceEEEEecCCCcce
Confidence            89999999999995 79999999998 6999999999665 555555555443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-31  Score=207.23  Aligned_cols=247  Identities=15%  Similarity=0.275  Sum_probs=194.9

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .|+..|.+++|+|.|++||+||.|.++.||.-..+                     +++.+..+.||+            
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~---------------------efecv~~lEGHE------------  105 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG---------------------EFECVATLEGHE------------  105 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCC---------------------ceeEEeeeeccc------------
Confidence            79999999999999999999999999999986544                     566888999999            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC---cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..|.+++|+++  |.+||++++|+.|-||.+..+   ++..+++.|...        |.       .+.|+|....|   
T Consensus       106 nEVK~Vaws~s--G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD--------VK-------~V~WHPt~dlL---  165 (312)
T KOG0645|consen  106 NEVKCVAWSAS--GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD--------VK-------HVIWHPTEDLL---  165 (312)
T ss_pred             cceeEEEEcCC--CCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc--------cc-------EEEEcCCccee---
Confidence            55999999755  889999999999999999854   455555555443        22       58999999887   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                               ++++.|++|++|+ -..   .....|.+.+ .+|...|.+++|+|.|..|+++ +|++++||...+.-   
T Consensus       166 ---------~S~SYDnTIk~~~-~~~---dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---  228 (312)
T KOG0645|consen  166 ---------FSCSYDNTIKVYR-DED---DDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---  228 (312)
T ss_pred             ---------EEeccCCeEEEEe-ecC---CCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---
Confidence                     9999999999998 221   3345666775 8999999999999999999999 99999999976221   


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                               -..|...++.+.|. ++  .||+++.|+.|++|.-... . +.|...+..+       .-..|...|++++
T Consensus       229 ---------~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~-~-d~p~~~l~~~-------~~~aHe~dVNsV~  287 (312)
T KOG0645|consen  229 ---------SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDS-P-DEPSWNLLAK-------KEGAHEVDVNSVQ  287 (312)
T ss_pred             ---------chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCC-C-CCchHHHHHh-------hhcccccccceEE
Confidence                     13367889999998 54  8999999999999976632 1 1111111111       1244667899999


Q ss_pred             EccC-CCEEEEeC-CCeEEEEECC
Q 015363          349 FARN-GRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       349 ~spd-g~~l~s~~-d~~v~~wd~~  370 (408)
                      |.|. ...|++|+ ||.|++|.+.
T Consensus       288 w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  288 WNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EcCCCCCceeecCCCceEEEEEec
Confidence            9994 56788875 5999999874

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.4e-31  Score=240.16  Aligned_cols=264  Identities=18%  Similarity=0.367  Sum_probs=213.6

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      |...|.|+.|+++|++|++++.++.+++|+..+...                     .....+.+|.            .
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~h~------------~  204 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSGHT------------R  204 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccccc------------c
Confidence            478899999999999999999999999999855431                     1234557787            7


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEc-CCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      .|++++|+|+  ++++++++.|++|++||+ ..+...+++..|...        +.       +++|+|+|+.+      
T Consensus       205 ~v~~~~fs~d--~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~--------v~-------~~~f~p~g~~i------  261 (456)
T KOG0266|consen  205 GVSDVAFSPD--GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY--------VT-------SVAFSPDGNLL------  261 (456)
T ss_pred             ceeeeEECCC--CcEEEEecCCceEEEeeccCCCeEEEEecCCCCc--------eE-------EEEecCCCCEE------
Confidence            7999999766  889999999999999999 555778888776543        44       79999999877      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc-eeeE
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-SFNI  270 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~  270 (408)
                            ++|+.|++|++|| +..      +++.+.+ .+|...|++++|++++++|+++ .|+.|++||+.+... +...
T Consensus       262 ------~Sgs~D~tvriWd-~~~------~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~  327 (456)
T KOG0266|consen  262 ------VSGSDDGTVRIWD-VRT------GECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL  327 (456)
T ss_pred             ------EEecCCCcEEEEe-ccC------CeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence                  9999999999999 543      5566665 9999999999999999999999 899999999995442 2222


Q ss_pred             eecCCCcccCCcC--CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          271 VDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       271 ~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                             +..+..  .+++++|+|++ .+++++..|+.+++||++.+...    ..+.+|...         ...+.+..
T Consensus       328 -------~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~----~~~~~~~~~---------~~~~~~~~  386 (456)
T KOG0266|consen  328 -------LSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSV----GTYTGHSNL---------VRCIFSPT  386 (456)
T ss_pred             -------ccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcce----eeecccCCc---------ceeEeccc
Confidence                   333333  59999999999 99999999999999999988654    666666421         02455566


Q ss_pred             EccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec-ccccceE
Q 015363          349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKV  389 (408)
Q Consensus       349 ~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~-~~~~~~~  389 (408)
                      .++.++++++|+ |+.|++||+.+ +..++.+.+| ......+
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s-~~~~~~l~~h~~~~~~~~  428 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSS-GGILQRLEGHSKAAVSDL  428 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCc-cchhhhhcCCCCCceecc
Confidence            688999999996 79999999998 7999999999 4443333

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.2e-33  Score=226.61  Aligned_cols=253  Identities=15%  Similarity=0.303  Sum_probs=198.7

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      -+.+|..|.|.|+|+.|++|+..|.+.||+....                       .+...+++|.            +
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-----------------------nFEtilQaHD------------s  139 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-----------------------NFETILQAHD------------S  139 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCcee-----------------------eHHHHhhhhc------------c
Confidence            3458999999999999999999999999996432                       2345678898            8


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      +|+++.|+++  |.++++|..+|.|++|+..-...+.....+.        ..|.       .++|+|+...+       
T Consensus       140 ~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~--------eaIR-------dlafSpnDskF-------  195 (464)
T KOG0284|consen  140 PVRTMKWSHN--GTWMISGDKGGMIKYWQPNMNNVKIIQAHHA--------EAIR-------DLAFSPNDSKF-------  195 (464)
T ss_pred             cceeEEEccC--CCEEEEcCCCceEEecccchhhhHHhhHhhh--------hhhh-------eeccCCCCcee-------
Confidence            8999999754  8899999999999999987554333222221        1233       68888877665       


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                           ++++.|+.|++|| ...      .+..+. +.+|.-.|.+++|+|...++|++ .|..|++||.+ .+.++.   
T Consensus       196 -----~t~SdDg~ikiWd-f~~------~kee~v-L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr-Sg~cl~---  258 (464)
T KOG0284|consen  196 -----LTCSDDGTIKIWD-FRM------PKEERV-LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR-SGSCLA---  258 (464)
T ss_pred             -----EEecCCCeEEEEe-ccC------Cchhhe-eccCCCCcceeccCCccceeEEccCCceeEeecCC-Ccchhh---
Confidence                 9999999999999 332      222233 38999999999999999999999 89999999999 455553   


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  352 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd  352 (408)
                          ++..|+..|..+.|+|++ ++|++++.|..++++|+++.+.+    ..+++|            ...|+++.|+|-
T Consensus       259 ----tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl----~~~r~H------------kkdv~~~~WhP~  317 (464)
T KOG0284|consen  259 ----TLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKEL----FTYRGH------------KKDVTSLTWHPL  317 (464)
T ss_pred             ----hhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHH----HHhhcc------------hhhheeeccccc
Confidence                378899999999999999 99999999999999999977554    666666            478999999995


Q ss_pred             CC-EEEEe-CCCeEEEEECCCCCCceee-eeeccc
Q 015363          353 GR-HILSR-DYMTLKLWDINMDSGPVAT-FQVHEH  384 (408)
Q Consensus       353 g~-~l~s~-~d~~v~~wd~~~~~~~~~~-~~~~~~  384 (408)
                      .. +|.+| .||.|..|.+... +++-. -.+|..
T Consensus       318 ~~~lftsgg~Dgsvvh~~v~~~-~p~~~i~~AHd~  351 (464)
T KOG0284|consen  318 NESLFTSGGSDGSVVHWVVGLE-EPLGEIPPAHDG  351 (464)
T ss_pred             cccceeeccCCCceEEEecccc-ccccCCCccccc
Confidence            44 55555 5899999999853 33333 334444

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.7e-31  Score=201.38  Aligned_cols=261  Identities=13%  Similarity=0.201  Sum_probs=196.4

Q ss_pred             CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCc
Q 015363           48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA  127 (408)
Q Consensus        48 ~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~  127 (408)
                      -+||++++|-+||+|...++.+                       ..+++...            +.|+.+...|+  +.
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C-----------------------~rTiqh~d------------sqVNrLeiTpd--k~   53 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGIC-----------------------SRTIQHPD------------SQVNRLEITPD--KK   53 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeE-----------------------EEEEecCc------------cceeeEEEcCC--cc
Confidence            4899999999999999998864                       34455444            67999999654  76


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCcee
Q 015363          128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL  207 (408)
Q Consensus       128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  207 (408)
                      .||+++ ...||+||++++....+..+..+      ...|.       .+.|..+|+.+            ++|++||++
T Consensus        54 ~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h------~kNVt-------aVgF~~dgrWM------------yTgseDgt~  107 (311)
T KOG0315|consen   54 DLAAAG-NQHVRLYDLNSNNPNPVATFEGH------TKNVT-------AVGFQCDGRWM------------YTGSEDGTV  107 (311)
T ss_pred             hhhhcc-CCeeEEEEccCCCCCceeEEecc------CCceE-------EEEEeecCeEE------------EecCCCceE
Confidence            776665 45899999998765444333322      12344       68999999998            999999999


Q ss_pred             eeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE
Q 015363          208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT  286 (408)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  286 (408)
                      ++|| ++.      ..+.+.  ..|..+|+++..+|+..-|++| .+|.|++||+.......++       ++.....|.
T Consensus       108 kIWd-lR~------~~~qR~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l-------iPe~~~~i~  171 (311)
T KOG0315|consen  108 KIWD-LRS------LSCQRN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL-------IPEDDTSIQ  171 (311)
T ss_pred             EEEe-ccC------cccchh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc-------CCCCCccee
Confidence            9999 544      233343  3566899999999999999999 8999999999843222222       455568899


Q ss_pred             EEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEE
Q 015363          287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLK  365 (408)
Q Consensus       287 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~  365 (408)
                      ++...|+| .+++++...|..++|++-.....    ..+.      +...++.|.+-|..+.+|||+++||+++ |.+++
T Consensus       172 sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~----s~l~------P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~  240 (311)
T KOG0315|consen  172 SLTVMPDG-SMLAAANNKGNCYVWRLLNHQTA----SELE------PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVK  240 (311)
T ss_pred             eEEEcCCC-cEEEEecCCccEEEEEccCCCcc----ccce------EhhheecccceEEEEEECCCCcEEEeecCCceEE
Confidence            99999999 99999999999999999764321    1111      1222566678999999999999999985 89999


Q ss_pred             EEECCCCCCceeeeeecccccceEEecCCCeee
Q 015363          366 LWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM  398 (408)
Q Consensus       366 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (408)
                      ||+.+..-+.-..+++|+...-...+..++..+
T Consensus       241 iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Yl  273 (311)
T KOG0315|consen  241 IWNTDDFFKLELVLTGHQRWVWDCAFSADGEYL  273 (311)
T ss_pred             EEecCCceeeEEEeecCCceEEeeeeccCccEE
Confidence            999987446777888888765555444555543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-31  Score=216.70  Aligned_cols=244  Identities=19%  Similarity=0.302  Sum_probs=205.3

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|.+.|..|+|+..|++||+++.|=.+++||.++.                      +++...+.+|+         
T Consensus       145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~----------------------~~c~ks~~gh~---------  193 (406)
T KOG0295|consen  145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF----------------------FRCIKSLIGHE---------  193 (406)
T ss_pred             hhhccccceeEEEEecCccEEEecCCccchhheeHHHH----------------------HHHHHHhcCcc---------
Confidence            34589999999999999999999999988999998753                      23456677777         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|.++.|.|.  |.+++++++|.+|+.|++.++.++.++..+..        .+.       .+..+.||..+   
T Consensus       194 ---h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--------wvr-------~v~v~~DGti~---  250 (406)
T KOG0295|consen  194 ---HGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--------WVR-------MVRVNQDGTII---  250 (406)
T ss_pred             ---cceeeEEEEec--CCeeeecccccceeEEecccceeEEeccCchH--------hEE-------EEEecCCeeEE---
Confidence               77999999987  67999999999999999999999998887643        344       57788888887   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC---------------CCEEEEe-cC
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---------------GETFISA-DD  253 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---------------~~~l~~~-~d  253 (408)
                               ++++.|..+++|- +..      ..|... +..|..+|.+++|.|.               +.+++++ .|
T Consensus       251 ---------As~s~dqtl~vW~-~~t------~~~k~~-lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD  313 (406)
T KOG0295|consen  251 ---------ASCSNDQTLRVWV-VAT------KQCKAE-LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD  313 (406)
T ss_pred             ---------EecCCCceEEEEE-ecc------chhhhh-hhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence                     9999999999998 433      334444 3788889999999774               2578888 89


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCC
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT  333 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  333 (408)
                      ++|++||+.++...+.        +.+|..+|+.++|+|-| ++|+++..|+++++||+++++..    +.++.|+    
T Consensus       314 ktIk~wdv~tg~cL~t--------L~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cm----k~~~ah~----  376 (406)
T KOG0295|consen  314 KTIKIWDVSTGMCLFT--------LVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCM----KTLEAHE----  376 (406)
T ss_pred             ceEEEEeccCCeEEEE--------EecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceee----eccCCCc----
Confidence            9999999996654443        68999999999999999 99999999999999999998544    6776664    


Q ss_pred             ccccccccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363          334 RSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~  369 (408)
                              .-+++++|+.+..++++|+ |.++++|.-
T Consensus       377 --------hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  377 --------HFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             --------ceeEEEecCCCCceEEeccccceeeeeec
Confidence                    6799999999999999998 799999964

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.8e-31  Score=219.89  Aligned_cols=241  Identities=19%  Similarity=0.277  Sum_probs=202.4

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      .-.|+++|.++.|+.+|.||++++.|+++.|||..++..                       .+.|.-|.          
T Consensus       272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-----------------------~q~f~~~s----------  318 (524)
T KOG0273|consen  272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-----------------------KQQFEFHS----------  318 (524)
T ss_pred             hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-----------------------EEeeeecc----------
Confidence            347999999999999999999999999999999877753                       45566666          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        .+-.+|.|-   +...|++++.|+.|+|+.+........+..|..        .|.       ++.|.|.|..|    
T Consensus       319 --~~~lDVdW~---~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g--------~V~-------alk~n~tg~LL----  374 (524)
T KOG0273|consen  319 --APALDVDWQ---SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG--------EVN-------ALKWNPTGSLL----  374 (524)
T ss_pred             --CCccceEEe---cCceEeecCCCceEEEEEecCCCcceeeecccC--------ceE-------EEEECCCCceE----
Confidence              556789993   345899999999999999999888888887643        455       78999999998    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC---------CEEEEe-cCCeEEEEe
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG---------ETFISA-DDLRINLWN  260 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---------~~l~~~-~d~~i~iwd  260 (408)
                              ++++.|+++++|. ..+      ..+... +.+|...|..+.|+|+|         ..++++ .|++|++||
T Consensus       375 --------aS~SdD~TlkiWs-~~~------~~~~~~-l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd  438 (524)
T KOG0273|consen  375 --------ASCSDDGTLKIWS-MGQ------SNSVHD-LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD  438 (524)
T ss_pred             --------EEecCCCeeEeee-cCC------Ccchhh-hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence                    9999999999999 322      333334 48999999999999975         457777 999999999


Q ss_pred             CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      +. ...++..       +..|..+|++++|+|+| +++|+|+.||.|.+|++++++..    +.+.+.            
T Consensus       439 v~-~gv~i~~-------f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~l~----~s~~~~------------  493 (524)
T KOG0273|consen  439 VE-SGVPIHT-------LMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGKLV----KSYQGT------------  493 (524)
T ss_pred             cc-CCceeEe-------eccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchhee----EeecCC------------
Confidence            99 4445443       67899999999999999 99999999999999999999765    666665            


Q ss_pred             cceeEEEEEccCCCEEEEe-CCCeEEEEECC
Q 015363          341 IASISDIKFARNGRHILSR-DYMTLKLWDIN  370 (408)
Q Consensus       341 ~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~  370 (408)
                       +.|..++|+.+|..|.++ +|+.+++-|++
T Consensus       494 -~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  494 -GGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             -CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence             679999999999988877 79999999885

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-30  Score=231.93  Aligned_cols=272  Identities=19%  Similarity=0.247  Sum_probs=197.0

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCC----------------------------CCcccccccccc--
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDN----------------------------GGQRRDLEMMDY--   82 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~----------------------------~~~~~~~~~~~~--   82 (408)
                      +|.+.|+++.||+||+|||+|+.||.|+||.+...+..                            ....+.......  
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            79999999999999999999999999999998761100                            000000000000  


Q ss_pred             -cccCCC------ccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccC
Q 015363           83 -SMSRHP------EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN  155 (408)
Q Consensus        83 -~~~~~p------~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  155 (408)
                       ....-|      .-+.+..|.||.            +.|.++.|+.  + .+|++++.|++||+|++...+++.++...
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWSK--n-~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn  409 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWSK--N-NFLLSSSMDKTVRLWHPGRKECLKVFSHN  409 (712)
T ss_pred             CccccCCCccccccccchhhhhccc------------hhheeccccc--C-CeeEeccccccEEeecCCCcceeeEEecC
Confidence             000111      224556788888            6699999963  3 49999999999999999999999988774


Q ss_pred             CCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccc
Q 015363          156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH  235 (408)
Q Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (408)
                      .         -|.       +++|+|....           ++++|+-|+.+++|. +...+...        ...-..-
T Consensus       410 d---------fVT-------cVaFnPvDDr-----------yFiSGSLD~KvRiWs-I~d~~Vv~--------W~Dl~~l  453 (712)
T KOG0283|consen  410 D---------FVT-------CVAFNPVDDR-----------YFISGSLDGKVRLWS-ISDKKVVD--------WNDLRDL  453 (712)
T ss_pred             C---------eeE-------EEEecccCCC-----------cEeecccccceEEee-cCcCeeEe--------ehhhhhh
Confidence            3         233       8999996543           249999999999999 54322211        1222266


Q ss_pred             eEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCC--CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363          236 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  312 (408)
Q Consensus       236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  312 (408)
                      |+++++.|+|+..+.| -+|.+++|++. +.+......+..  ..-..|. .|+.+.|.|..+..+++.+.|.+|+|||.
T Consensus       454 ITAvcy~PdGk~avIGt~~G~C~fY~t~-~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  454 ITAVCYSPDGKGAVIGTFNGYCRFYDTE-GLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             heeEEeccCCceEEEEEeccEEEEEEcc-CCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence            9999999999999999 89999999998 444433333221  1112233 79999999988666777789999999999


Q ss_pred             CCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      +...++    ..|++....          ..-....|+.||++|++++ |..|++|+...
T Consensus       532 ~~~~lv----~KfKG~~n~----------~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  532 RDKDLV----HKFKGFRNT----------SSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             cchhhh----hhhcccccC----------CcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            877655    666666431          3345678999999999996 59999999854

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.8e-30  Score=208.52  Aligned_cols=277  Identities=16%  Similarity=0.212  Sum_probs=210.9

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .+..|++.|.+++.+|+.+++|||+.|..-.||++.++.                       ....+.+|+         
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----------------------~~~eltgHK---------  106 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----------------------FAGELTGHK---------  106 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----------------------ceeEecCCC---------
Confidence            345799999999999999999999999999999998886                       356788998         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         +.|+++.|+  .+|.+||+|..+|.|+||+..++.....+.....       .-.+        +.|+|.+..+   
T Consensus       107 ---DSVt~~~Fs--hdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~-------dieW--------l~WHp~a~il---  163 (399)
T KOG0296|consen  107 ---DSVTCCSFS--HDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE-------DIEW--------LKWHPRAHIL---  163 (399)
T ss_pred             ---CceEEEEEc--cCceEEEecCCCccEEEEEcccCceEEEeecccC-------ceEE--------EEecccccEE---
Confidence               889999996  5699999999999999999999987776653222       2233        7899988887   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                               +.|+.||.+.+|. +...      ...+. +.+|..++++=.|.|+|+.++++ .||+|++|+..+..+..
T Consensus       164 ---------lAG~~DGsvWmw~-ip~~------~~~kv-~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~  226 (399)
T KOG0296|consen  164 ---------LAGSTDGSVWMWQ-IPSQ------ALCKV-MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH  226 (399)
T ss_pred             ---------EeecCCCcEEEEE-CCCc------ceeeE-ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence                     9999999999999 4321      22333 48999999999999999999999 99999999999654443


Q ss_pred             eEee-----cCCCcc--------------------------------------cCCcCCeEEEE---EcCCCCceEEEEe
Q 015363          269 NIVD-----VKPANM--------------------------------------EDLTEVITSAE---FHPTHCNMLAYSS  302 (408)
Q Consensus       269 ~~~~-----~~~~~~--------------------------------------~~~~~~v~~~~---~~p~~~~~l~s~~  302 (408)
                      .+-.     ..+..+                                      ..+...+.++.   ++..- .++|+|+
T Consensus       227 ~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~  305 (399)
T KOG0296|consen  227 KITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL-PLAACGS  305 (399)
T ss_pred             EecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc-chhhccc
Confidence            3310     000000                                      01111122222   22233 4788999


Q ss_pred             CCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeee
Q 015363          303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       303 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      -||+|.|||+...+.     +..-.|            ..+|..+.|-+ ..+|+++ .+|.|+.||.++ |+++.++.|
T Consensus       306 vdG~i~iyD~a~~~~-----R~~c~h------------e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt-G~l~~~y~G  366 (399)
T KOG0296|consen  306 VDGTIAIYDLAASTL-----RHICEH------------EDGVTKLKWLN-TDYLLTACANGKVRQWDART-GQLKFTYTG  366 (399)
T ss_pred             ccceEEEEecccchh-----heeccC------------CCceEEEEEcC-cchheeeccCceEEeeeccc-cceEEEEec
Confidence            999999999987643     222233            46799999998 5667666 689999999999 899999999


Q ss_pred             cccccceEEecCCCeee
Q 015363          382 HEHLRPKVMHSSKNYFM  398 (408)
Q Consensus       382 ~~~~~~~~~~~~~~~~~  398 (408)
                      |........-..+.+++
T Consensus       367 H~~~Il~f~ls~~~~~v  383 (399)
T KOG0296|consen  367 HQMGILDFALSPQKRLV  383 (399)
T ss_pred             CchheeEEEEcCCCcEE
Confidence            99987777655555543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=8.1e-32  Score=216.99  Aligned_cols=234  Identities=16%  Similarity=0.318  Sum_probs=187.1

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      ...+.|.|+++.  ...+++|..|++|+|||..+..                       ++..+.||+            
T Consensus       195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~-----------------------c~~~L~GHt------------  237 (499)
T KOG0281|consen  195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE-----------------------CLKILTGHT------------  237 (499)
T ss_pred             ccCCceEEEEec--chhhhcccccCceEEeccccHH-----------------------HHHhhhcCC------------
Confidence            356789999984  5569999999999999987554                       456789999            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      +.|.|+.|.    ...+++|+.|.+|++||+++++++.++-.+...        |.       .+.|+  ..++      
T Consensus       238 GSVLCLqyd----~rviisGSSDsTvrvWDv~tge~l~tlihHcea--------VL-------hlrf~--ng~m------  290 (499)
T KOG0281|consen  238 GSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA--------VL-------HLRFS--NGYM------  290 (499)
T ss_pred             CcEEeeecc----ceEEEecCCCceEEEEeccCCchhhHHhhhcce--------eE-------EEEEe--CCEE------
Confidence            779999993    358999999999999999999988877665432        21       12222  2333      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                            ++++.|.++.+|| +..   .....+.+. +.+|...|+.+.|+  .++++++ .|.+|++|++. ....+.+ 
T Consensus       291 ------vtcSkDrsiaVWd-m~s---ps~it~rrV-LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s-t~efvRt-  355 (499)
T KOG0281|consen  291 ------VTCSKDRSIAVWD-MAS---PTDITLRRV-LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS-TCEFVRT-  355 (499)
T ss_pred             ------EEecCCceeEEEe-ccC---chHHHHHHH-Hhhhhhheeeeccc--cceEEEecCCceEEEEecc-ceeeehh-
Confidence                  8999999999999 322   222334444 48999999999885  4599998 99999999999 4455543 


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                            +.+|...|-|+.+.  + +++++|+.|.+|++||+..|..+    +.++||+            .-|.++.|. 
T Consensus       356 ------l~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~cL----RvLeGHE------------eLvRciRFd-  409 (499)
T KOG0281|consen  356 ------LNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACL----RVLEGHE------------ELVRCIRFD-  409 (499)
T ss_pred             ------hhcccccceehhcc--C-eEEEecCCCceEEEEeccccHHH----HHHhchH------------Hhhhheeec-
Confidence                  78999999999884  6 89999999999999999999665    8888885            679999994 


Q ss_pred             CCCEEEEeC-CCeEEEEECCCC
Q 015363          352 NGRHILSRD-YMTLKLWDINMD  372 (408)
Q Consensus       352 dg~~l~s~~-d~~v~~wd~~~~  372 (408)
                       .+.|++|. ||+|++||+.+.
T Consensus       410 -~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  410 -NKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             -CceeeeccccceEEEEecccc
Confidence             68899996 799999999874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=3.1e-29  Score=216.65  Aligned_cols=278  Identities=18%  Similarity=0.315  Sum_probs=214.3

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|.++|++++|+|++++|++++.+|.|++|++.++..                       ...+..|.           
T Consensus         6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-----------------------~~~~~~~~-----------   51 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-----------------------LRTLKGHT-----------   51 (289)
T ss_pred             cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-----------------------EEEEecCC-----------
Confidence            46899999999999999999999999999999886642                       34566676           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       ..+..+.|+|+  ++++++++.|+.|++|++.+++....+..+.        ..+.       .+.|.+++..+     
T Consensus        52 -~~i~~~~~~~~--~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--------~~i~-------~~~~~~~~~~~-----  108 (289)
T cd00200          52 -GPVRDVAASAD--GTYLASGSSDKTIRLWDLETGECVRTLTGHT--------SYVS-------SVAFSPDGRIL-----  108 (289)
T ss_pred             -cceeEEEECCC--CCEEEEEcCCCeEEEEEcCcccceEEEeccC--------CcEE-------EEEEcCCCCEE-----
Confidence             66889999765  6799999999999999999875555444332        1233       68888887776     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             ++++.++.+.+|+ +..      ......+ ..|...+.+++|+|++.+++++ .++.|++||++.. +....
T Consensus       109 -------~~~~~~~~i~~~~-~~~------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~  172 (289)
T cd00200         109 -------SSSSRDKTIKVWD-VET------GKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVAT  172 (289)
T ss_pred             -------EEecCCCeEEEEE-CCC------cEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-cccee
Confidence                   7777799999999 432      2223333 5677889999999999999988 6999999999843 33332


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                             +..|...+.++.|+|++ ..+++++.|+.|++||++.++..    ..+..+            ...|.+++|+
T Consensus       173 -------~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~----~~~~~~------------~~~i~~~~~~  228 (289)
T cd00200         173 -------LTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCL----GTLRGH------------ENGVNSVAFS  228 (289)
T ss_pred             -------EecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCcee----cchhhc------------CCceEEEEEc
Confidence                   45677789999999999 88888888999999999987543    444444            3689999999


Q ss_pred             cCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCee-ee--eeceeeec
Q 015363          351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYF-MG--LDNIHTLY  407 (408)
Q Consensus       351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~d~~~~~~  407 (408)
                      |++.++++++ ++.|++||+.+ ++++..+..|......+....++.. +.  .|....+|
T Consensus       229 ~~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         229 PDGYLLASGSEDGTIRVWDLRT-GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             CCCcEEEEEcCCCcEEEEEcCC-ceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence            9999999997 79999999997 6888888888776555554333333 32  24444554

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=3e-30  Score=227.37  Aligned_cols=247  Identities=17%  Similarity=0.332  Sum_probs=202.8

Q ss_pred             cceEEEEECCCCCeEEEeecC-CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           36 DIISAIEFDKSGDHLATGDRG-GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      .+|..++|+..|.+||.|+.. |.+-||++....                       ++...++|.            ..
T Consensus       308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-----------------------YVlKQQgH~------------~~  352 (893)
T KOG0291|consen  308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-----------------------YVLKQQGHS------------DR  352 (893)
T ss_pred             ceeeEEEecccCCEEEEcCCccceEEEEEeeccc-----------------------eeeeccccc------------cc
Confidence            578899999999999998865 899999998765                       456678898            77


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      +++++++|+  |+++|+|+.||.|+|||..++-|..++..|...        +.       .+.|+..|+.+        
T Consensus       353 i~~l~YSpD--gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~--------Vt-------~v~f~~~g~~l--------  407 (893)
T KOG0291|consen  353 ITSLAYSPD--GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSG--------VT-------AVQFTARGNVL--------  407 (893)
T ss_pred             eeeEEECCC--CcEEEeccCCCcEEEEeccCceEEEEeccCCCc--------eE-------EEEEEecCCEE--------
Confidence            999999755  999999999999999999999999888876432        33       68999999988        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEee
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~  272 (408)
                          ++.+-||+|+.|| +.+      ..+.+++.....-...|++..|.|.++.+|  +.-.|.+|+++ .++.+.+  
T Consensus       408 ----lssSLDGtVRAwD-lkR------YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q-TGqllDi--  473 (893)
T KOG0291|consen  408 ----LSSSLDGTVRAWD-LKR------YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ-TGQLLDI--  473 (893)
T ss_pred             ----EEeecCCeEEeee-ecc------cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee-cCeeeeh--
Confidence                9999999999999 654      445555544445568899999999999888  56789999999 5666655  


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  352 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd  352 (408)
                           +.+|.++|.+++|+|.+ ..||+++.|.+|++||+-.....   +.+++..             ..+..++|+||
T Consensus       474 -----LsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~---vEtl~i~-------------sdvl~vsfrPd  531 (893)
T KOG0291|consen  474 -----LSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGT---VETLEIR-------------SDVLAVSFRPD  531 (893)
T ss_pred             -----hcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCce---eeeEeec-------------cceeEEEEcCC
Confidence                 79999999999999999 99999999999999999765321   1333332             57999999999


Q ss_pred             CCEEEEeC-CCeEEEEECCCCCCceeee
Q 015363          353 GRHILSRD-YMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       353 g~~l~s~~-d~~v~~wd~~~~~~~~~~~  379 (408)
                      |+-|+++. ||.|.+||... +..+-++
T Consensus       532 G~elaVaTldgqItf~d~~~-~~q~~~I  558 (893)
T KOG0291|consen  532 GKELAVATLDGQITFFDIKE-AVQVGSI  558 (893)
T ss_pred             CCeEEEEEecceEEEEEhhh-ceeeccc
Confidence            99999985 89999999986 3444333

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=2e-30  Score=227.99  Aligned_cols=276  Identities=20%  Similarity=0.275  Sum_probs=213.8

Q ss_pred             ceeeccceEEEEEC-CCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           31 EVQEVDIISAIEFD-KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        31 ~~~h~~~V~~~~~s-~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .++..+.|..++|- |+.++||.+++.+.+|+|+..+..+                        ..+.||+         
T Consensus       319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c------------------------~ii~GH~---------  365 (775)
T KOG0319|consen  319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC------------------------QIIPGHT---------  365 (775)
T ss_pred             hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce------------------------EEEeCch---------
Confidence            45678889999875 5788999999999999998877754                        2688999         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE--eccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV--FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                         +.|.++...  ..|.+|++|+.|.++++|.++++.....  .....+      .+.+.       +++.+..+.   
T Consensus       366 ---e~vlSL~~~--~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH------~~svg-------ava~~~~~a---  424 (775)
T KOG0319|consen  366 ---EAVLSLDVW--SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH------TNSVG-------AVAGSKLGA---  424 (775)
T ss_pred             ---hheeeeeec--ccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc------ccccc-------eeeecccCc---
Confidence               779999832  3367999999999999999955433221  111111      11222       455544443   


Q ss_pred             cccccccCccccCCCCCceeeeceeeec-ccccc--ccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTS-QETNL--VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI  263 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~  263 (408)
                              .++++++.|.++++|+ +.. .+...  ...+... ...|+..|++++++|+..++|+| .|.+.+||+++ 
T Consensus       425 --------sffvsvS~D~tlK~W~-l~~s~~~~~~~~~~~~~t-~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-  493 (775)
T KOG0319|consen  425 --------SFFVSVSQDCTLKLWD-LPKSKETAFPIVLTCRYT-ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-  493 (775)
T ss_pred             --------cEEEEecCCceEEEec-CCCcccccccceehhhHH-HHhhcccccceEecCCCceEEecccccceeeeccc-
Confidence                    3468999999999999 544 11111  1111122 36899999999999999999999 99999999999 


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                      .....-       .+.+|...|.++.|+|.. +++|++|.|++|+||.+.+....    ++|+||            .+.
T Consensus       494 ~~~l~~-------vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSCl----kT~eGH------------~~a  549 (775)
T KOG0319|consen  494 QLRLLG-------VLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSCL----KTFEGH------------TSA  549 (775)
T ss_pred             CceEEE-------EeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccceee----eeecCc------------cce
Confidence            333433       389999999999999999 99999999999999999998655    888888            588


Q ss_pred             eEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCe
Q 015363          344 ISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNY  396 (408)
Q Consensus       344 i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (408)
                      |..+.|-.+|+.|+++ +||-+++|++++ +.+++++.+|+...-.+......+
T Consensus       550 Vlra~F~~~~~qliS~~adGliKlWnikt-~eC~~tlD~H~DrvWaL~~~~~~~  602 (775)
T KOG0319|consen  550 VLRASFIRNGKQLISAGADGLIKLWNIKT-NECEMTLDAHNDRVWALSVSPLLD  602 (775)
T ss_pred             eEeeeeeeCCcEEEeccCCCcEEEEeccc-hhhhhhhhhccceeEEEeecCccc
Confidence            9999999999999998 689999999998 799999999988766665544444

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=9.5e-30  Score=194.40  Aligned_cols=256  Identities=16%  Similarity=0.204  Sum_probs=206.7

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|.++|.++.|+-||+|.++++.|.+|++|+...+.                       ++.++.+|.           
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----------------------liktYsghG-----------   59 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----------------------LIKTYSGHG-----------   59 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----------------------eeeeecCCC-----------
Confidence            4688999999999999999999999999999977664                       467888888           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       ..|.+++.+  .|+..|++|+.|+.+.+||+.+++..+.+..|..        .+.       .+.|+.+...+     
T Consensus        60 -~EVlD~~~s--~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a--------qVN-------tV~fNeesSVv-----  116 (307)
T KOG0316|consen   60 -HEVLDAALS--SDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA--------QVN-------TVRFNEESSVV-----  116 (307)
T ss_pred             -ceeeecccc--ccccccccCCCCceEEEEEcccCeeeeecccccc--------eee-------EEEecCcceEE-----
Confidence             449999985  4577999999999999999999999988888754        344       67888888877     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             ++|+.|..+++|| .+...    .++++.+ ......|.+|.++  +..+++| .||+++.||++.+. ..  
T Consensus       117 -------~SgsfD~s~r~wD-CRS~s----~ePiQil-dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~-l~--  178 (307)
T KOG0316|consen  117 -------ASGSFDSSVRLWD-CRSRS----FEPIQIL-DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT-LS--  178 (307)
T ss_pred             -------EeccccceeEEEE-cccCC----CCccchh-hhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce-ee--
Confidence                   9999999999999 55432    3344443 4555778888775  4567777 89999999999443 32  


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                             ......+|++++|++++ +..++++-|+++++.|-.+|+++    +.+++|.+.          ..=.+.+++
T Consensus       179 -------sDy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGklL----~sYkGhkn~----------eykldc~l~  236 (307)
T KOG0316|consen  179 -------SDYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKLL----KSYKGHKNM----------EYKLDCCLN  236 (307)
T ss_pred             -------hhhcCCcceeEEecCCC-CEEEEeeccceeeecccchhHHH----HHhcccccc----------eeeeeeeec
Confidence                   12345779999999999 88888999999999999999876    888888642          334567788


Q ss_pred             cCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc
Q 015363          351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                      .....+++|+ ||.|++||+.. ...+..++.+...
T Consensus       237 qsdthV~sgSEDG~Vy~wdLvd-~~~~sk~~~~~~v  271 (307)
T KOG0316|consen  237 QSDTHVFSGSEDGKVYFWDLVD-ETQISKLSVVSTV  271 (307)
T ss_pred             ccceeEEeccCCceEEEEEecc-ceeeeeeccCCce
Confidence            8888999997 69999999997 6777777777665

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-29  Score=197.54  Aligned_cols=264  Identities=15%  Similarity=0.188  Sum_probs=207.7

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|..+++.|.++.+|.+|.+++.|.++.||-..+++                       .+-++.||.         
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----------------------rlGty~GHt---------   52 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----------------------RLGTYDGHT---------   52 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------------eeeeecCCC---------
Confidence            345799999999999999999999999999999876554                       356899999         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         +.|.|+..  +.+.+.+++|+.|.++++||+++|+.+...+...         .+.       .+.|+++|.++   
T Consensus        53 ---GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~---------~Vk-------~~~F~~~gn~~---  108 (327)
T KOG0643|consen   53 ---GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTNS---------PVK-------RVDFSFGGNLI---  108 (327)
T ss_pred             ---ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecCC---------eeE-------EEeeccCCcEE---
Confidence               77999998  4557799999999999999999999888777643         344       67888888876   


Q ss_pred             cccccCccccC----CCCCceeeeceeeeccc-cccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC
Q 015363          190 FGCASNDSSFP----PGGVSSLRLPVVVTSQE-TNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI  263 (408)
Q Consensus       190 ~~~~~~~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~  263 (408)
                              +++    -+..+.|.++| +.... ......|...+ ..+...++.+-|.|-++++++| +||.|..||+++
T Consensus       109 --------l~~tD~~mg~~~~v~~fd-i~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~  178 (327)
T KOG0643|consen  109 --------LASTDKQMGYTCFVSVFD-IRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDART  178 (327)
T ss_pred             --------EEEehhhcCcceEEEEEE-ccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence                    222    24457788888 55433 23334445554 6677889999999999999999 999999999997


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC-----------
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG-----------  332 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----------  332 (408)
                      +.+....       ...|...|+.|+++|+. .++++++.|.+-++||+++...+    +++....+-+           
T Consensus       179 g~~~v~s-------~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~----Kty~te~PvN~aaisP~~d~V  246 (327)
T KOG0643|consen  179 GKELVDS-------DEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVL----KTYTTERPVNTAAISPLLDHV  246 (327)
T ss_pred             Cceeeec-------hhhhccccccccccCCc-ceEEecccCccceeeeccceeeE----EEeeecccccceecccccceE
Confidence            6666553       56788899999999999 99999999999999999876543    2221111000           


Q ss_pred             ----------------------Cc----------cccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          333 ----------------------TR----------SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       333 ----------------------~~----------~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                                            .+          --.++|-++|++++|+|+|+..++|+ ||.|++..++.
T Consensus       247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence                                  00          01378999999999999999999986 79999987764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.9e-30  Score=230.33  Aligned_cols=254  Identities=13%  Similarity=0.220  Sum_probs=211.5

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .+..|.++|..++|+|++.++++|+.|-.|++|+.++.++                       +-++.||-         
T Consensus        46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc-----------------------lftL~GHl---------   93 (1202)
T KOG0292|consen   46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC-----------------------LFTLLGHL---------   93 (1202)
T ss_pred             hhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee-----------------------hhhhcccc---------
Confidence            4568999999999999999999999999999999987764                       46788998         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         +.|..+.|++..+  +++++|.|.+|+||+..+++++.++.+|.+-        |.       +..|+|....+   
T Consensus        94 ---DYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHY--------VM-------cAqFhptEDlI---  150 (1202)
T KOG0292|consen   94 ---DYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHY--------VM-------CAQFHPTEDLI---  150 (1202)
T ss_pred             ---ceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceE--------EE-------eeccCCccceE---
Confidence               7799999987644  9999999999999999999999999998664        44       67889988887   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccc---c-------------------ccccceeeccccccceEEEEeCCCCCE
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETN---L-------------------VAGCRRIYAHAHDYHINSISNNSDGET  247 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-------------------~~~~~~~~~~~~~~~v~~i~~~~~~~~  247 (408)
                               ++++-|.+|++|| +.+....   +                   ....++-.+.+|+..|+.++|+|.-.+
T Consensus       151 ---------VSaSLDQTVRVWD-isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl  220 (1202)
T KOG0292|consen  151 ---------VSASLDQTVRVWD-ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL  220 (1202)
T ss_pred             ---------EEecccceEEEEe-ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence                     9999999999999 6542211   0                   011223345899999999999999999


Q ss_pred             EEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccc
Q 015363          248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE  326 (408)
Q Consensus       248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  326 (408)
                      +++| +|..|++|.... .+..+.     .+..+|...|.++-|+|.. .++++.+.|++|++||+...+.+    +++.
T Consensus       221 iVSG~DDRqVKlWrmne-tKaWEv-----DtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~v----~tfr  289 (1202)
T KOG0292|consen  221 IVSGADDRQVKLWRMNE-TKAWEV-----DTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTSV----QTFR  289 (1202)
T ss_pred             EEecCCcceeeEEEecc-ccceee-----hhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccccce----eeee
Confidence            9999 999999999984 444443     3478999999999999998 89999999999999999887544    6665


Q ss_pred             cccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363          327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       327 ~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~  371 (408)
                      ...            ...+.++-+|..+++++|.|+.+.+|.+..
T Consensus       290 ren------------dRFW~laahP~lNLfAAgHDsGm~VFkleR  322 (1202)
T KOG0292|consen  290 REN------------DRFWILAAHPELNLFAAGHDSGMIVFKLER  322 (1202)
T ss_pred             ccC------------CeEEEEEecCCcceeeeecCCceEEEEEcc
Confidence            442            578889999999999999887778888864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.5e-30  Score=220.39  Aligned_cols=253  Identities=14%  Similarity=0.219  Sum_probs=209.5

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..+++.|.++.|+|...+++++-.+|.|.||+.++...                       +..+.-.+           
T Consensus        10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-----------------------VksfeV~~-----------   55 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-----------------------VKSFEVSE-----------   55 (794)
T ss_pred             hccCCceeeeecCCCCceEEEeeecCeeEEEeccccee-----------------------eeeeeecc-----------
Confidence            35889999999999999999999999999999988764                       34555555           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       -+|.+..|...  .+++++|+.|..|++++..+.+.+..+..|.+-        +.       +++.+|...++     
T Consensus        56 -~PvRa~kfiaR--knWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy--------IR-------~iavHPt~P~v-----  112 (794)
T KOG0276|consen   56 -VPVRAAKFIAR--KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY--------IR-------SIAVHPTLPYV-----  112 (794)
T ss_pred             -cchhhheeeec--cceEEEecCCceEEEEecccceeeEEeeccccc--------ee-------eeeecCCCCeE-----
Confidence             67999999876  449999999999999999999988888776432        33       57777777776     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                             ++++.|-.|++|+  +..    ...|.+++ .+|...|.+++|+|. .+.||++ -|++|++|.+..+...+ 
T Consensus       113 -------LtsSDDm~iKlW~--we~----~wa~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf-  177 (794)
T KOG0276|consen  113 -------LTSSDDMTIKLWD--WEN----EWACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF-  177 (794)
T ss_pred             -------EecCCccEEEEee--ccC----ceeeeeEE-cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce-
Confidence                   9999999999999  332    24566666 999999999999995 4789998 89999999999555444 


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCC-CceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                             ++.+|...|.++.|-+-| ..+|++|+.|.+|+|||.++...+    .+++||            ...|..+.
T Consensus       178 -------Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV----~TLeGH------------t~Nvs~v~  234 (794)
T KOG0276|consen  178 -------TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV----QTLEGH------------TNNVSFVF  234 (794)
T ss_pred             -------eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH----HHhhcc------------cccceEEE
Confidence                   378999999999998765 259999999999999999998554    788888            47899999


Q ss_pred             EccCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363          349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       349 ~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                      |+|.-..+++|+ ||+++||+..+ .+..+++.
T Consensus       235 fhp~lpiiisgsEDGTvriWhs~T-y~lE~tLn  266 (794)
T KOG0276|consen  235 FHPELPIIISGSEDGTVRIWNSKT-YKLEKTLN  266 (794)
T ss_pred             ecCCCcEEEEecCCccEEEecCcc-eehhhhhh
Confidence            999999999997 69999999987 45544443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.3e-29  Score=194.14  Aligned_cols=245  Identities=13%  Similarity=0.205  Sum_probs=194.0

Q ss_pred             ceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeee-ccCCcccccccc
Q 015363           31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKS  108 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~  108 (408)
                      ..+|.+.|..++|+|- |..||+|+.|..|+||+...+.                    .+.+...+ .+|+        
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------------s~~ck~vld~~hk--------   61 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------------SWTCKTVLDDGHK--------   61 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------------cEEEEEeccccch--------
Confidence            3478999999999998 9999999999999999987532                    12233333 3566        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE--EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                          ..|.+++|+|.  |++|++++.|.++.||.-..++.  ..++++|.+        .|.       +++|+++|.+|
T Consensus        62 ----rsVRsvAwsp~--g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn--------EVK-------~Vaws~sG~~L  120 (312)
T KOG0645|consen   62 ----RSVRSVAWSPH--GRYLASASFDATVVIWKKEDGEFECVATLEGHEN--------EVK-------CVAWSASGNYL  120 (312)
T ss_pred             ----heeeeeeecCC--CcEEEEeeccceEEEeecCCCceeEEeeeecccc--------cee-------EEEEcCCCCEE
Confidence                77999999877  88999999999999998876654  445555533        344       79999999998


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                  +++++|+.|.+|. +..   .....|...+ +.|...|..+.|+|...+|+++ .|.+|++|+-....
T Consensus       121 ------------ATCSRDKSVWiWe-~de---ddEfec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd  183 (312)
T KOG0645|consen  121 ------------ATCSRDKSVWIWE-IDE---DDEFECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD  183 (312)
T ss_pred             ------------EEeeCCCeEEEEE-ecC---CCcEEEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC
Confidence                        9999999999999 442   1234455554 8999999999999999999999 89999999887322


Q ss_pred             c--eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          266 Q--SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       266 ~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                      .  +.+       ++.+|...|.+++|+|.| ..|++++.|++++||-..+.         +.           ..|+..
T Consensus       184 dW~c~~-------tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~---------~~-----------~~~sr~  235 (312)
T KOG0645|consen  184 DWECVQ-------TLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTD---------LS-----------GMHSRA  235 (312)
T ss_pred             CeeEEE-------EecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccC---------cc-----------hhcccc
Confidence            2  232       378899999999999999 99999999999999986633         11           112467


Q ss_pred             eEEEEEccCCCEEEEe-CCCeEEEEECCC
Q 015363          344 ISDIKFARNGRHILSR-DYMTLKLWDINM  371 (408)
Q Consensus       344 i~~~~~spdg~~l~s~-~d~~v~~wd~~~  371 (408)
                      +..+.|.  .-.|+++ .|+.|++|.-..
T Consensus       236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  236 LYDVPWD--NGVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             eEeeeec--ccceEeccCCCEEEEEEecC
Confidence            8999998  4577876 689999998764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1.1e-28  Score=209.03  Aligned_cols=281  Identities=15%  Similarity=0.235  Sum_probs=201.8

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      -+|..+++-..|+|.|.|+|+|...|.|||||....+..                     +..+++.-.           
T Consensus        56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hi---------------------LKnef~v~a-----------  103 (603)
T KOG0318|consen   56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHI---------------------LKNEFQVLA-----------  103 (603)
T ss_pred             ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCccee---------------------eeeeeeecc-----------
Confidence            368899999999999999999999999999998764321                     233444444           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeC--CC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          112 EEKINKIRWCQSANSALYLLSTN--DK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~--d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                       ++|.++.|.  .++.++++.++  ++  .+.+||.-  .....+..+..        .+.       ++.+-|...+- 
T Consensus       104 -G~I~Di~Wd--~ds~RI~avGEGrerfg~~F~~DSG--~SvGei~GhSr--------~in-------s~~~KpsRPfR-  162 (603)
T KOG0318|consen  104 -GPIKDISWD--FDSKRIAAVGEGRERFGHVFLWDSG--NSVGEITGHSR--------RIN-------SVDFKPSRPFR-  162 (603)
T ss_pred             -cccccceeC--CCCcEEEEEecCccceeEEEEecCC--Cccceeeccce--------eEe-------eeeccCCCceE-
Confidence             789999995  55888888753  33  45566654  33333333321        122       34444443322 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                                +++++.|+.|.+|+       .+.-+....+ ..|..-|+++.|+|||..||++ .||+|.+||=.++++
T Consensus       163 ----------i~T~sdDn~v~ffe-------GPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~  224 (603)
T KOG0318|consen  163 ----------IATGSDDNTVAFFE-------GPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK  224 (603)
T ss_pred             ----------EEeccCCCeEEEee-------CCCeeeeecc-cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence                      48999999999988       2222333333 7888999999999999999998 999999999987666


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccc------------------------
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS------------------------  322 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------  322 (408)
                      .-.+-     .-.+|.+.|..++|+||+ ..+++++.|.+++|||+.+.+++..-.                        
T Consensus       225 vg~l~-----~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl  298 (603)
T KOG0318|consen  225 VGELE-----DSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL  298 (603)
T ss_pred             EEEec-----CCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence            55431     145899999999999999 999999999999999998875441000                        


Q ss_pred             ---cccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeee-eecccccceEE
Q 015363          323 ---KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF-QVHEHLRPKVM  390 (408)
Q Consensus       323 ---~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~-~~~~~~~~~~~  390 (408)
                         -.+-....+.+..++.+|...|++++.+||+++|++|+ ||.|.-|+..+ +..-+.. ++|......+.
T Consensus       299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~-g~~~~~~g~~h~nqI~~~~  370 (603)
T KOG0318|consen  299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS-GTSDRLAGKGHTNQIKGMA  370 (603)
T ss_pred             CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC-ccccccccccccceEEEEe
Confidence               01111223346677899999999999999999999998 79999999987 3433332 45554444443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.9e-29  Score=207.63  Aligned_cols=268  Identities=15%  Similarity=0.200  Sum_probs=211.3

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|.+.|+-+.||++|++||+++.|.+..||++....                    .+++..++.+|.          
T Consensus       220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------------------~~kl~~tlvgh~----------  269 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------------------HFKLKKTLVGHS----------  269 (519)
T ss_pred             HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------------------ceeeeeeeeccc----------
Confidence            34699999999999999999999999999999976543                    345677888998          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        .+|..+.|+|+  ..++++|+.|..+++||+.+++.........              +.+..+++|.|||..+    
T Consensus       270 --~~V~yi~wSPD--dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~--------------~~S~~sc~W~pDg~~~----  327 (519)
T KOG0293|consen  270 --QPVSYIMWSPD--DRYLLACGFDEVLSLWDVDTGDLRHLYPSGL--------------GFSVSSCAWCPDGFRF----  327 (519)
T ss_pred             --CceEEEEECCC--CCeEEecCchHheeeccCCcchhhhhcccCc--------------CCCcceeEEccCCcee----
Confidence              88999999766  7799999999999999999998776554431              1233378999999998    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              ++|+.|+.+..|| +.+... ...+      ......|.+++..+||+++++. .|..|++|+.++. ....
T Consensus       328 --------V~Gs~dr~i~~wd-lDgn~~-~~W~------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-~dr~  390 (519)
T KOG0293|consen  328 --------VTGSPDRTIIMWD-LDGNIL-GNWE------GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR-VDRG  390 (519)
T ss_pred             --------EecCCCCcEEEec-CCcchh-hccc------ccccceeEEEEEcCCCcEEEEEecccceeeechhhh-hhhc
Confidence                    9999999999999 433211 1111      1112568999999999999887 9999999999843 3322


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      +        .....+|++.+.+.++ +++.+.-.+..|.+||+.....+    ..+.||...          ..|..-+|
T Consensus       391 l--------ise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~lv----~kY~Ghkq~----------~fiIrSCF  447 (519)
T KOG0293|consen  391 L--------ISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKLV----RKYFGHKQG----------HFIIRSCF  447 (519)
T ss_pred             c--------ccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhHH----HHhhccccc----------ceEEEecc
Confidence            2        2235679999999999 88888888999999999977554    677777531          34555567


Q ss_pred             cc-CCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEe
Q 015363          350 AR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMH  391 (408)
Q Consensus       350 sp-dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~  391 (408)
                      -- +..++++|+ |+.|+||+..+ ++++.++.||....+++..
T Consensus       448 gg~~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVsw  490 (519)
T KOG0293|consen  448 GGGNDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVSW  490 (519)
T ss_pred             CCCCcceEEecCCCceEEEEEccC-CceeEeecCCcceeeEEec
Confidence            65 558999997 69999999998 8999999999987777653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=3.3e-29  Score=204.09  Aligned_cols=279  Identities=18%  Similarity=0.232  Sum_probs=207.3

Q ss_pred             eecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccC
Q 015363           20 SQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH   99 (408)
Q Consensus        20 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h   99 (408)
                      .+-+--+.+.+.+.|.++|.++...  +++|++|++||+++|||..+..                        ...+.+|
T Consensus        90 v~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~------------------------~~~~~Gh  143 (423)
T KOG0313|consen   90 VEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS------------------------IKTIVGH  143 (423)
T ss_pred             EEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCce------------------------EEEEecC
Confidence            3333344455667899999999987  7899999999999999987653                        4578899


Q ss_pred             CcccccccccccccceeEEEEeec-CCCcEEEEEeCCCeEEEEEcCCCcEEE----EeccCCCCcccCCCCCeEeecCCc
Q 015363          100 EPEFDYLKSLEIEEKINKIRWCQS-ANSALYLLSTNDKTIKLWKVQEKKVKK----VFDWNVHPEKAAGNGPIFGSHVSA  174 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~l~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~  174 (408)
                      .            ++|.+++|.-. +....|++++.|.++++|..+.++...    ...+|.        ..|.      
T Consensus       144 t------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk--------~~V~------  197 (423)
T KOG0313|consen  144 T------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK--------RSVD------  197 (423)
T ss_pred             C------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc--------ccee------
Confidence            8            78998888632 223369999999999999998765332    222322        2333      


Q ss_pred             eeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccc-------------------ccccccceeeccccccc
Q 015363          175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET-------------------NLVAGCRRIYAHAHDYH  235 (408)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~  235 (408)
                       ++...++|..+            ++++.|..|++|+ ......                   .....++-. +.+|..+
T Consensus       198 -sVsv~~sgtr~------------~SgS~D~~lkiWs-~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt-l~GHt~~  262 (423)
T KOG0313|consen  198 -SVSVDSSGTRF------------CSGSWDTMLKIWS-VETDEEDELESSSNRRRKKQKREKEGGTRTPLVT-LEGHTEP  262 (423)
T ss_pred             -EEEecCCCCeE------------Eeecccceeeecc-cCCCccccccccchhhhhhhhhhhcccccCceEE-ecccccc
Confidence             57778888876            9999999999999 332110                   112223333 4899999


Q ss_pred             eEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 015363          236 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  314 (408)
Q Consensus       236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  314 (408)
                      |.++.|++ ...+.++ .|.+|+.||+.+.+....+        . -...+.++.++|.. .+|++|+.|..|++||.|+
T Consensus       263 Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~--------~-~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  263 VSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL--------T-TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             eeeEEEcC-CCceEeecccceEEEEEeecccceeee--------e-cCcceeEeeccccc-ceeeecCCCCceeecCCCC
Confidence            99999998 4455666 8999999999966655443        2 25568999999998 9999999999999999998


Q ss_pred             CceecccccccccccCCCCccccccccceeEEEEEccCCCE-EEEeC-CCeEEEEECCCCCCceeeeeecccccceE
Q 015363          315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKV  389 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~-l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~  389 (408)
                      +.-      .+.       .+.|.+|...|.++.|+|...+ |++++ |+++++||+++...++..+.+|..-...+
T Consensus       332 ~~g------s~v-------~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v  395 (423)
T KOG0313|consen  332 GDG------SVV-------SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV  395 (423)
T ss_pred             CCC------cee-------EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE
Confidence            742      111       2235566789999999997654 56676 79999999999766999999996544433

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=1.2e-29  Score=205.24  Aligned_cols=241  Identities=13%  Similarity=0.212  Sum_probs=201.8

Q ss_pred             cccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccC
Q 015363           83 SMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA  162 (408)
Q Consensus        83 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  162 (408)
                      ...+++.+++...+++|.            +.|.|+++-|.  +++|++|+.|++|+|||+.+++++..+.++...    
T Consensus       134 rPeWHapwKl~rVi~gHl------------gWVr~vavdP~--n~wf~tgs~DrtikIwDlatg~LkltltGhi~~----  195 (460)
T KOG0285|consen  134 RPEWHAPWKLYRVISGHL------------GWVRSVAVDPG--NEWFATGSADRTIKIWDLATGQLKLTLTGHIET----  195 (460)
T ss_pred             CccccCcceehhhhhhcc------------ceEEEEeeCCC--ceeEEecCCCceeEEEEcccCeEEEeecchhhe----
Confidence            345777888999999999            77999999654  789999999999999999999998888776432    


Q ss_pred             CCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeC
Q 015363          163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN  242 (408)
Q Consensus       163 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  242 (408)
                          +.       .+++++-..++            |+++.|+.|+.|| +..      .+.++.+ .+|-..|.+++.+
T Consensus       196 ----vr-------~vavS~rHpYl------------Fs~gedk~VKCwD-Le~------nkvIR~Y-hGHlS~V~~L~lh  244 (460)
T KOG0285|consen  196 ----VR-------GVAVSKRHPYL------------FSAGEDKQVKCWD-LEY------NKVIRHY-HGHLSGVYCLDLH  244 (460)
T ss_pred             ----ee-------eeeecccCceE------------EEecCCCeeEEEe-chh------hhhHHHh-ccccceeEEEecc
Confidence                22       47778777777            9999999999999 433      2333443 7999999999999


Q ss_pred             CCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccc
Q 015363          243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH  321 (408)
Q Consensus       243 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  321 (408)
                      |.-..|++| .|.++++||+++..+...        +.+|...|.++.+.|.. ..+++|+.|++|++||++.++..   
T Consensus       245 PTldvl~t~grDst~RvWDiRtr~~V~~--------l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~---  312 (460)
T KOG0285|consen  245 PTLDVLVTGGRDSTIRVWDIRTRASVHV--------LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM---  312 (460)
T ss_pred             ccceeEEecCCcceEEEeeecccceEEE--------ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee---
Confidence            999999999 999999999996554432        78999999999999988 67899999999999999999654   


Q ss_pred             ccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCeee
Q 015363          322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM  398 (408)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (408)
                       .++..|            ...|.+++.+|.-..+|+++-..|+-|++.. |..++.+.+|......+....++-++
T Consensus       313 -~tlt~h------------kksvral~lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~iintl~~nsD~v~~  375 (460)
T KOG0285|consen  313 -ITLTHH------------KKSVRALCLHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAIINTLSVNSDGVLV  375 (460)
T ss_pred             -Eeeecc------------cceeeEEecCCchhhhhccCCccceeccCCc-cchhhccccccceeeeeeeccCceEE
Confidence             555555            4789999999999999999866999999997 89999999999998888765555543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=8.1e-29  Score=224.70  Aligned_cols=248  Identities=17%  Similarity=0.302  Sum_probs=198.8

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      +..+|...|++++|+|+++++++|+.|++|+|||+...                      .+.+..+.+|.         
T Consensus       198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~----------------------~~~~~~l~gH~---------  246 (456)
T KOG0266|consen  198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD----------------------GRNLKTLKGHS---------  246 (456)
T ss_pred             cccccccceeeeEECCCCcEEEEecCCceEEEeeccCC----------------------CeEEEEecCCC---------
Confidence            33689999999999999999999999999999998433                      12467899999         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|++++|+|.  |+++++|+.|++|++||++++++...+..+...        +.       .++|++++..+   
T Consensus       247 ---~~v~~~~f~p~--g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~--------is-------~~~f~~d~~~l---  303 (456)
T KOG0266|consen  247 ---TYVTSVAFSPD--GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG--------IS-------GLAFSPDGNLL---  303 (456)
T ss_pred             ---CceEEEEecCC--CCEEEEecCCCcEEEEeccCCeEEEeeeccCCc--------eE-------EEEECCCCCEE---
Confidence               77999999766  789999999999999999999999988887543        33       68999999998   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeecccccc--ceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY--HINSISNNSDGETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                               ++++.|+.|++|| +......    +.+.+ ..+..  .++++.|+|++.+++++ .|+.+++||+.... 
T Consensus       304 ---------~s~s~d~~i~vwd-~~~~~~~----~~~~~-~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~-  367 (456)
T KOG0266|consen  304 ---------VSASYDGTIRVWD-LETGSKL----CLKLL-SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK-  367 (456)
T ss_pred             ---------EEcCCCccEEEEE-CCCCcee----eeecc-cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc-
Confidence                     8889999999999 5443211    22332 33333  59999999999999999 89999999999443 


Q ss_pred             eeeEeecCCCcccCCcCC---eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          267 SFNIVDVKPANMEDLTEV---ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~---v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                      ....       ..+|...   +.+...++.+ .++++|+.|+.|.+||+.++..+    ..+.+|.           ...
T Consensus       368 ~~~~-------~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~----~~l~~h~-----------~~~  424 (456)
T KOG0266|consen  368 SVGT-------YTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGIL----QRLEGHS-----------KAA  424 (456)
T ss_pred             ceee-------ecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccchh----hhhcCCC-----------CCc
Confidence            3332       3445443   3445557788 99999999999999999987544    5666662           367


Q ss_pred             eEEEEEccCCCEEEEeC---CCeEEEEECC
Q 015363          344 ISDIKFARNGRHILSRD---YMTLKLWDIN  370 (408)
Q Consensus       344 i~~~~~spdg~~l~s~~---d~~v~~wd~~  370 (408)
                      +..+.|+|...++++++   |+.+++|..+
T Consensus       425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            99999999999999874   6999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.1e-27  Score=233.37  Aligned_cols=257  Identities=14%  Similarity=0.220  Sum_probs=190.5

Q ss_pred             ccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        29 ~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      +....|.+.|.+++|+|+|++||+|+.|+.|+||+.......+..              ..+ ....+.+ .        
T Consensus       477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~--------------~~~-~~~~~~~-~--------  532 (793)
T PLN00181        477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD--------------IHY-PVVELAS-R--------  532 (793)
T ss_pred             ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc--------------ccc-ceEEecc-c--------
Confidence            345569999999999999999999999999999997542110000              000 0111222 2        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc-CCCeee
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGE  187 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~  187 (408)
                          ..|.+++|+|. .+.+|++++.||+|++||+.+++....+..+.        +.|.       ++.|+| ++..+ 
T Consensus       533 ----~~v~~l~~~~~-~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~--------~~V~-------~l~~~p~~~~~L-  591 (793)
T PLN00181        533 ----SKLSGICWNSY-IKSQVASSNFEGVVQVWDVARSQLVTEMKEHE--------KRVW-------SIDYSSADPTLL-  591 (793)
T ss_pred             ----CceeeEEeccC-CCCEEEEEeCCCeEEEEECCCCeEEEEecCCC--------CCEE-------EEEEcCCCCCEE-
Confidence                56899999763 35689999999999999999888777665543        3455       789986 67776 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeC-CCCCEEEEe-cCCeEEEEeCCCCC
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                 ++++.|+.|++|| +...      .+...+ .. ...+.++.|+ +++.+|++| .|+.|++||++...
T Consensus       592 -----------~Sgs~Dg~v~iWd-~~~~------~~~~~~-~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~  651 (793)
T PLN00181        592 -----------ASGSDDGSVKLWS-INQG------VSIGTI-KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK  651 (793)
T ss_pred             -----------EEEcCCCEEEEEE-CCCC------cEEEEE-ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence                       9999999999999 5432      222332 22 3578899995 578999999 99999999998554


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCce--ecccccccccccCCCCccccccccce
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                      .....       +.+|...|.++.|. ++ .+|++++.|++|++||++....  ...++..+.            +|...
T Consensus       652 ~~~~~-------~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~------------gh~~~  710 (793)
T PLN00181        652 LPLCT-------MIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHSFM------------GHTNV  710 (793)
T ss_pred             ccceE-------ecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEEEc------------CCCCC
Confidence            33332       56799999999997 55 7899999999999999985421  011223444            44678


Q ss_pred             eEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          344 ISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       344 i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      +..++|+|++.+|++|+ |+.|++|+...
T Consensus       711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        711 KNFVGLSVSDGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             eeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence            99999999999999996 69999999875

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.1e-29  Score=222.78  Aligned_cols=260  Identities=15%  Similarity=0.263  Sum_probs=208.9

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      .+..|..++|+|...+++++-..|.|++||..-+.                       ++..|..|.            +
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----------------------li~rFdeHd------------G   52 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----------------------LIDRFDEHD------------G   52 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhh-----------------------HHhhhhccC------------C
Confidence            35678999999999999999999999999987665                       345788888            8


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      +|..++|+|+  ..+|++|+.|..|++|+..+.++...+.+|.+-        |.       .+.|++.-..|       
T Consensus        53 pVRgv~FH~~--qplFVSGGDDykIkVWnYk~rrclftL~GHlDY--------VR-------t~~FHheyPWI-------  108 (1202)
T KOG0292|consen   53 PVRGVDFHPT--QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY--------VR-------TVFFHHEYPWI-------  108 (1202)
T ss_pred             ccceeeecCC--CCeEEecCCccEEEEEecccceehhhhccccce--------eE-------EeeccCCCceE-------
Confidence            8999999887  459999999999999999999988887777542        33       45666666665       


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee---
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN---  269 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~---  269 (408)
                           ++++.|.+|++|+       -+..+|+..+ .+|...|.|..|+|....++++ -|.+|++||+..-++...   
T Consensus       109 -----lSASDDQTIrIWN-------wqsr~~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg  175 (1202)
T KOG0292|consen  109 -----LSASDDQTIRIWN-------WQSRKCIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG  175 (1202)
T ss_pred             -----EEccCCCeEEEEe-------ccCCceEEEE-ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC
Confidence                 9999999999999       2335566665 9999999999999999999999 799999999863111000   


Q ss_pred             --------------Eee----cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363          270 --------------IVD----VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  331 (408)
Q Consensus       270 --------------~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  331 (408)
                                    ++.    +-...+.+|...|.-++|+|.- .++++|+.|+.|++|.+...+       .++..   
T Consensus       176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetK-------aWEvD---  244 (1202)
T KOG0292|consen  176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETK-------AWEVD---  244 (1202)
T ss_pred             CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEecccc-------ceeeh---
Confidence                          000    0002368899999999999999 899999999999999987653       22222   


Q ss_pred             CCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeee
Q 015363          332 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~  381 (408)
                          ++.+|...|.++-|+|...+|++.+ |++|++||+.. .+.+++|+.
T Consensus       245 ----tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k-Rt~v~tfrr  290 (1202)
T KOG0292|consen  245 ----TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK-RTSVQTFRR  290 (1202)
T ss_pred             ----hhhcccCCcceEEecCccceeEecCCCccEEEEeccc-ccceeeeec
Confidence                3456678999999999989999875 79999999997 678888854

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.6e-28  Score=190.50  Aligned_cols=255  Identities=15%  Similarity=0.267  Sum_probs=201.2

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      +..+|...|.+++|+.+|..||+|+.|+++++|+++..+..                     ......+|.         
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------------~~~~~~gh~---------   64 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------------KELVYRGHT---------   64 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------------hhhcccCCC---------
Confidence            45678999999999999999999999999999999866421                     223467787         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         +.|-.++|.|..+ .+|++++.|.+|++||.+.+++..........        +        .+.|+|+|+++   
T Consensus        65 ---~svdql~w~~~~~-d~~atas~dk~ir~wd~r~~k~~~~i~~~~en--------i--------~i~wsp~g~~~---  121 (313)
T KOG1407|consen   65 ---DSVDQLCWDPKHP-DLFATASGDKTIRIWDIRSGKCTARIETKGEN--------I--------NITWSPDGEYI---  121 (313)
T ss_pred             ---cchhhheeCCCCC-cceEEecCCceEEEEEeccCcEEEEeeccCcc--------e--------EEEEcCCCCEE---
Confidence               6799999998654 48999999999999999999988766654322        2        48999999998   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                               +.++.|..|...| .+.......        ......++.++|+.++.+|+.. ..|.|.|.....-+ .+
T Consensus       122 ---------~~~~kdD~it~id-~r~~~~~~~--------~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk-pv  182 (313)
T KOG1407|consen  122 ---------AVGNKDDRITFID-ARTYKIVNE--------EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK-PV  182 (313)
T ss_pred             ---------EEecCcccEEEEE-ecccceeeh--------hcccceeeeeeecCCCCEEEEecCCceEEEEeccccc-cc
Confidence                     8899999999888 443222111        2233567889999888888877 78999999887333 33


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      .       ++..|.....||.|+|+| ++||+|+.|..+.+||+...- |.   +.+..++            =+|..+.
T Consensus       183 ~-------si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi-C~---R~isRld------------wpVRTlS  238 (313)
T KOG1407|consen  183 Q-------SIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELI-CE---RCISRLD------------WPVRTLS  238 (313)
T ss_pred             c-------ccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhh-hh---eeecccc------------CceEEEE
Confidence            2       378899999999999999 999999999999999998652 32   4444443            4799999


Q ss_pred             EccCCCEEEEeC-CCeEEEEECCCCCCceeeeee
Q 015363          349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       349 ~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      ||-||++||+|+ |..|-|=++.+ |..+..++.
T Consensus       239 FS~dg~~lASaSEDh~IDIA~vet-Gd~~~eI~~  271 (313)
T KOG1407|consen  239 FSHDGRMLASASEDHFIDIAEVET-GDRVWEIPC  271 (313)
T ss_pred             eccCcceeeccCccceEEeEeccc-CCeEEEeec
Confidence            999999999997 69998888887 666666654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=7.9e-29  Score=195.93  Aligned_cols=247  Identities=13%  Similarity=0.206  Sum_probs=193.1

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|.++|..+.|.+|++.|++++.|.+|+.||.++++.                       ...+++|.         
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~-----------------------~rk~k~h~---------  132 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR-----------------------IRKHKGHT---------  132 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee-----------------------eehhcccc---------
Confidence            3458999999999999999999999999999999998874                       35678887         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         .-|+.+.-+. -+-.++.+++.|+++++||++..+..+++.....         +.       ++.|..++..+   
T Consensus       133 ---~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq---------lt-------Av~f~d~s~qv---  189 (338)
T KOG0265|consen  133 ---SFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ---------LT-------AVGFKDTSDQV---  189 (338)
T ss_pred             ---ceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhcccccee---------EE-------EEEecccccce---
Confidence               5577777332 2234677788999999999998887776633221         22       68888888887   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc--
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ--  266 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~--  266 (408)
                               ++|+-|+.|++|| +++.+..      .. +.+|...|+.+..+|+|.++.+- .|.++++||++....  
T Consensus       190 ---------~sggIdn~ikvWd-~r~~d~~------~~-lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~  252 (338)
T KOG0265|consen  190 ---------ISGGIDNDIKVWD-LRKNDGL------YT-LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ  252 (338)
T ss_pred             ---------eeccccCceeeec-cccCcce------EE-eecccCceeeEEeccCCCccccccccceEEEEEecccCCCC
Confidence                     9999999999999 6554433      33 58999999999999999999997 899999999984322  


Q ss_pred             -eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          267 -SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       267 -~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                       ++.++.-.   ...-......++|+|++ ..+.+|+.|..+++||......+    +.+++|            .+.|+
T Consensus       253 R~v~if~g~---~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~~l----yklpGh------------~gsvn  312 (338)
T KOG0265|consen  253 RCVKIFQGH---IHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRRIL----YKLPGH------------YGSVN  312 (338)
T ss_pred             ceEEEeecc---hhhhhhhcceeeccCCC-CccccccccceEEEeecccccEE----EEcCCc------------ceeEE
Confidence             33332111   11112234578999999 99999999999999999876554    677777            58999


Q ss_pred             EEEEccCCCEEEEe-CCCeEEEEE
Q 015363          346 DIKFARNGRHILSR-DYMTLKLWD  368 (408)
Q Consensus       346 ~~~~spdg~~l~s~-~d~~v~~wd  368 (408)
                      +++|+|...+|.++ +|.+|++=.
T Consensus       313 ~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  313 EVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             EeeecCCCcEEEEeccCceeEeec
Confidence            99999999999998 589888643

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.6e-29  Score=191.88  Aligned_cols=245  Identities=16%  Similarity=0.261  Sum_probs=194.5

Q ss_pred             eccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           34 EVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        34 h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      -.+.+..++|+++ .+.+++++.||.++|||.....                      ..+..++.|.            
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s----------------------~Pi~~~kEH~------------  104 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS----------------------KPIHKFKEHK------------  104 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------------------cchhHHHhhh------------
Confidence            4678999999997 6688999999999999954332                      2466788898            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..|.++.|++. ++..+++++.|++|++|+...+..++++..+.        ..|+       ...|+|....+      
T Consensus       105 ~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~--------~~Iy-------~a~~sp~~~nl------  162 (311)
T KOG0277|consen  105 REVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN--------SCIY-------QAAFSPHIPNL------  162 (311)
T ss_pred             hheEEeccccc-cceeEEeeccCCceEeecCCCCcceEeecCCc--------cEEE-------EEecCCCCCCe------
Confidence            55999999864 45678888999999999999988888877753        3455       56788865544      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                           +++++.|+.+++|| ++..     ++...  +..|...+.++.|+.- .+.|++| .|+.|++||++..+.++..
T Consensus       163 -----fas~Sgd~~l~lwd-vr~~-----gk~~~--i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e  229 (311)
T KOG0277|consen  163 -----FASASGDGTLRLWD-VRSP-----GKFMS--IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE  229 (311)
T ss_pred             -----EEEccCCceEEEEE-ecCC-----CceeE--EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee
Confidence                 58999999999999 5443     22222  3788899999999975 5677888 8999999999976665443


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                             +.+|.-.|+.++|+|....+||+++.|-+++|||...+..+   +.+...            |+.-+..+.||
T Consensus       230 -------L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~---~e~~~~------------HtEFv~g~Dws  287 (311)
T KOG0277|consen  230 -------LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA---IETVDH------------HTEFVCGLDWS  287 (311)
T ss_pred             -------ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh---hhhhhc------------cceEEeccccc
Confidence                   68899999999999998889999999999999999866433   133333            46789999999


Q ss_pred             c-CCCEEEEeC-CCeEEEEEC
Q 015363          351 R-NGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       351 p-dg~~l~s~~-d~~v~~wd~  369 (408)
                      + ++.++|+++ |..++||+-
T Consensus       288 ~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  288 LFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccCceeeecccccceeeecc
Confidence            8 567888875 899999984

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4e-28  Score=213.94  Aligned_cols=284  Identities=11%  Similarity=0.148  Sum_probs=227.3

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      +..+|...|.++++|.+...+++|+. +.|+||+.++.++                       +.++..           
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kc-----------------------iRTi~~-----------  412 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKC-----------------------IRTITC-----------  412 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcce-----------------------eEEecc-----------
Confidence            45689999999999999998888865 5899999987764                       233333           


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..+.+..|.|.  +.++++|...|.+.++|+.+.........|        +|.++       .++.+||++..   
T Consensus       413 ---~y~l~~~Fvpg--d~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH--------dgaIW-------si~~~pD~~g~---  469 (888)
T KOG0306|consen  413 ---GYILASKFVPG--DRYIVLGTKNGELQVFDLASASLVETIRAH--------DGAIW-------SISLSPDNKGF---  469 (888)
T ss_pred             ---ccEEEEEecCC--CceEEEeccCCceEEEEeehhhhhhhhhcc--------cccee-------eeeecCCCCce---
Confidence               34889999865  779999999999999999988766655544        55677       78999999987   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeec------cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCC
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA------HAHDYHINSISNNSDGETFISA-DDLRINLWNLE  262 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~  262 (408)
                               ++++.|.+|++|+ ..-... ..+...+.+.      -.-...|.|+++||||++||++ -|.+|++|-++
T Consensus       470 ---------vT~saDktVkfWd-f~l~~~-~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD  538 (888)
T KOG0306|consen  470 ---------VTGSADKTVKFWD-FKLVVS-VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD  538 (888)
T ss_pred             ---------EEecCCcEEEEEe-EEEEec-cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec
Confidence                     9999999999999 433222 1111111110      1234678999999999999999 99999999998


Q ss_pred             CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccc
Q 015363          263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA  342 (408)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  342 (408)
                      +.+-.+        ++-+|.-+|.||..+||+ .++++|+.|..|++|-+.-|..-    +.+-+|            ..
T Consensus       539 tlKFfl--------sLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCH----KS~fAH------------dD  593 (888)
T KOG0306|consen  539 TLKFFL--------SLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCH----KSFFAH------------DD  593 (888)
T ss_pred             ceeeee--------eecccccceeEEeccCCc-CeEEeccCCCceEEeccccchhh----hhhhcc------------cC
Confidence            443333        368999999999999999 99999999999999999887543    566666            57


Q ss_pred             eeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee---eeceeeecC
Q 015363          343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG---LDNIHTLYE  408 (408)
Q Consensus       343 ~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~  408 (408)
                      .|.++.|-|+..++.+++ |+.|+-||-.+ -..++++.+|.....++...-.+.++.   -|..-+|||
T Consensus       594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~k-Fe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             ceeEEEEcccceeEEEecCcceEEeechhh-hhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            899999999988888876 89999999998 699999999999999998777776653   377778886

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.4e-28  Score=208.05  Aligned_cols=298  Identities=17%  Similarity=0.161  Sum_probs=211.2

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .|+..|+++++.|.|-.|++|+.|-+|++||+.+.....                +.++.+.....|.            
T Consensus       165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~----------------~~fr~l~P~E~h~------------  216 (641)
T KOG0772|consen  165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM----------------RSFRQLQPCETHQ------------  216 (641)
T ss_pred             CCceEEEEeeecCCCceeeeccccceEEEEecccccccc----------------hhhhccCcccccc------------
Confidence            478889999999999999999999999999998876421                1233444455566            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc-ccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE-KAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                        |+++.|+|+  |..|++.+.....+|+|-...+.....++..... .....|.+.    ...+.+|+|..+..     
T Consensus       217 --i~sl~ys~T--g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia----~lt~g~whP~~k~~-----  283 (641)
T KOG0772|consen  217 --INSLQYSVT--GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIA----ELTCGCWHPDNKEE-----  283 (641)
T ss_pred             --cceeeecCC--CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCcee----eeeccccccCcccc-----
Confidence              999999876  6688888888899999988877766665533221 111122221    12367889887765     


Q ss_pred             cccCccccCCCCCceeeeceeeeccc-cccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQE-TNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                            +++++.|+++++|+ +.+.. .....+.+.  ..+..-.++..+|+|+++.+|+| .||.|.+|+.........
T Consensus       284 ------FlT~s~DgtlRiWd-v~~~k~q~qVik~k~--~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~  354 (641)
T KOG0772|consen  284 ------FLTCSYDGTLRIWD-VNNTKSQLQVIKTKP--AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV  354 (641)
T ss_pred             ------eEEecCCCcEEEEe-cCCchhheeEEeecc--CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc
Confidence                  58999999999999 55432 211111111  12334568899999999999999 999999999863322111


Q ss_pred             EeecCCCcccCCcC--CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          270 IVDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       270 ~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                       +.+    -..|..  .|+|+.|+++| ++|++-+.|+++++||++..+.+   +.+..+-..+          -.-+.+
T Consensus       355 -~~v----k~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkp---L~~~tgL~t~----------~~~tdc  415 (641)
T KOG0772|consen  355 -MKV----KDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKP---LNVRTGLPTP----------FPGTDC  415 (641)
T ss_pred             -eEe----eeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccc---hhhhcCCCcc----------CCCCcc
Confidence             111    345665  89999999999 99999999999999999988643   4554444221          345789


Q ss_pred             EEccCCCEEEEe-----CC--CeEEEEECCCCCCceeeeeecccc-cceEEecCCCeeeee
Q 015363          348 KFARNGRHILSR-----DY--MTLKLWDINMDSGPVATFQVHEHL-RPKVMHSSKNYFMGL  400 (408)
Q Consensus       348 ~~spdg~~l~s~-----~d--~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  400 (408)
                      +|||+.++|++|     +.  +.+++||..+ -..++.+...... ..+++++--|.+++-
T Consensus       416 ~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t-~d~v~ki~i~~aSvv~~~WhpkLNQi~~g  475 (641)
T KOG0772|consen  416 CFSPDDKLILTGTSAPNGMTAGTLFFFDRMT-LDTVYKIDISTASVVRCLWHPKLNQIFAG  475 (641)
T ss_pred             ccCCCceEEEecccccCCCCCceEEEEeccc-eeeEEEecCCCceEEEEeecchhhheeee
Confidence            999999999997     12  7799999987 4666666554443 666776666666543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.3e-28  Score=216.70  Aligned_cols=258  Identities=12%  Similarity=0.178  Sum_probs=202.1

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      -..+|.+.|.+++...+|.+||||+.|.++++|.++.+..                   ..-++....+|+         
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~-------------------~~~~~a~~~gH~---------  411 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS-------------------KSLCVAQANGHT---------  411 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc-------------------hhhhhhhhcccc---------
Confidence            3458999999999777889999999999999999854432                   122345567888         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE-eccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                         ..|.+++++... -++|++++.|+++++|++...+.... ............+       ....+++.+|+.+.+  
T Consensus       412 ---~svgava~~~~~-asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd-------KdIN~Vaia~ndkLi--  478 (775)
T KOG0319|consen  412 ---NSVGAVAGSKLG-ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD-------KDINCVAIAPNDKLI--  478 (775)
T ss_pred             ---cccceeeecccC-ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc-------ccccceEecCCCceE--
Confidence               779999996433 35899999999999999986221111 0000000001112       222378999999998  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                ++|+.|++.++|+ +.+      ...... +.+|...|.++.|+|..+.++++ .|.+|+||.+. ...+
T Consensus       479 ----------AT~SqDktaKiW~-le~------~~l~~v-LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is-~fSC  539 (775)
T KOG0319|consen  479 ----------ATGSQDKTAKIWD-LEQ------LRLLGV-LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS-TFSC  539 (775)
T ss_pred             ----------Eecccccceeeec-ccC------ceEEEE-eeCCccceEEEEeccccceeEeccCCceEEEEEec-ccee
Confidence                      9999999999999 532      222233 48999999999999999999999 99999999999 5667


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      +++       +.+|...|..+.|-.++ ..|++++.||.|++|+++++...    .++..|            ...|+++
T Consensus       540 lkT-------~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~eC~----~tlD~H------------~DrvWaL  595 (775)
T KOG0319|consen  540 LKT-------FEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNECE----MTLDAH------------NDRVWAL  595 (775)
T ss_pred             eee-------ecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchhhh----hhhhhc------------cceeEEE
Confidence            664       89999999999999999 89999999999999999998543    677777            4789999


Q ss_pred             EEccCCCEEEEe-CCCeEEEEECCC
Q 015363          348 KFARNGRHILSR-DYMTLKLWDINM  371 (408)
Q Consensus       348 ~~spdg~~l~s~-~d~~v~~wd~~~  371 (408)
                      +-+|...++++| +|+.|.+|.=.+
T Consensus       596 ~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  596 SVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             eecCccceeEecCCCeEEEEeecCc
Confidence            999999999998 589999996554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=2.1e-28  Score=198.47  Aligned_cols=283  Identities=17%  Similarity=0.178  Sum_probs=196.7

Q ss_pred             CcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccc--cccc-cccCCCc
Q 015363           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLE--MMDY-SMSRHPE   89 (408)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~-~~~~~p~   89 (408)
                      .-+.|+.++  ++ ...+..+|++.|+|+.||.+|.+||||.-+|.|+||+..++...    .++.  ..+. .+.+||.
T Consensus        87 ~AflW~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~----~~~~~e~~dieWl~WHp~  159 (399)
T KOG0296|consen   87 LAFLWDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ----WKLDQEVEDIEWLKWHPR  159 (399)
T ss_pred             eEEEEEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE----EEeecccCceEEEEeccc
Confidence            457798887  34 55677899999999999999999999999999999999887642    2221  1111 3445552


Q ss_pred             c--------------------ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE
Q 015363           90 F--------------------RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK  149 (408)
Q Consensus        90 ~--------------------~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~  149 (408)
                      .                    ...+.+.||+            .++++=.|.|+  |++++++..||+|++|+..+++..
T Consensus       160 a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~------------~~ct~G~f~pd--GKr~~tgy~dgti~~Wn~ktg~p~  225 (399)
T KOG0296|consen  160 AHILLAGSTDGSVWMWQIPSQALCKVMSGHN------------SPCTCGEFIPD--GKRILTGYDDGTIIVWNPKTGQPL  225 (399)
T ss_pred             ccEEEeecCCCcEEEEECCCcceeeEecCCC------------CCcccccccCC--CceEEEEecCceEEEEecCCCcee
Confidence            2                    3445566777            88999999766  999999999999999999999877


Q ss_pred             EEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccc-cceee
Q 015363          150 KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG-CRRIY  228 (408)
Q Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~  228 (408)
                      .......+...              ..+.++..+..+            +.|..++.+++-. ....+...... ....+
T Consensus       226 ~~~~~~e~~~~--------------~~~~~~~~~~~~------------~~g~~e~~~~~~~-~~sgKVv~~~n~~~~~l  278 (399)
T KOG0296|consen  226 HKITQAEGLEL--------------PCISLNLAGSTL------------TKGNSEGVACGVN-NGSGKVVNCNNGTVPEL  278 (399)
T ss_pred             EEecccccCcC--------------Ccccccccccee------------EeccCCccEEEEc-cccceEEEecCCCCccc
Confidence            66553221100              034444445444            5555555555422 11000000000 00111


Q ss_pred             ccccccceEEEEeCC---CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC
Q 015363          229 AHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK  304 (408)
Q Consensus       229 ~~~~~~~v~~i~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  304 (408)
                      ...+...+.++.+.|   .=.+.|+| -||+|.|||+.... ...        .-.|...|..+.|-++  .+|++++.+
T Consensus       279 ~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-~R~--------~c~he~~V~~l~w~~t--~~l~t~c~~  347 (399)
T KOG0296|consen  279 KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-LRH--------ICEHEDGVTKLKWLNT--DYLLTACAN  347 (399)
T ss_pred             cccchhhhhhhhhcccccccchhhcccccceEEEEecccch-hhe--------eccCCCceEEEEEcCc--chheeeccC
Confidence            133444455555544   44677788 89999999998433 222        3458888999999993  689999999


Q ss_pred             CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECC
Q 015363          305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~  370 (408)
                      |.|+.||.|+|.+.    .++.+|            ...|.+++.+|+.+++++++ |++.++|++.
T Consensus       348 g~v~~wDaRtG~l~----~~y~GH------------~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  348 GKVRQWDARTGQLK----FTYTGH------------QMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ceEEeeeccccceE----EEEecC------------chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999764    565555            57899999999999999997 5999999874

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=1.8e-29  Score=203.53  Aligned_cols=241  Identities=14%  Similarity=0.277  Sum_probs=183.6

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|++.|.|++|.  .+.|++|+.|.+|+|||+++++.                       +..+-+|.          
T Consensus       233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~-----------------------l~tlihHc----------  277 (499)
T KOG0281|consen  233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP-----------------------LNTLIHHC----------  277 (499)
T ss_pred             hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch-----------------------hhHHhhhc----------
Confidence            46899999999995  56999999999999999998874                       45677787          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE---EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                        +.|..+.|+   +| ++++++.|.++.+||+.....   ..++.++...        |.       .+.|  +.+++ 
T Consensus       278 --eaVLhlrf~---ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa--------VN-------vVdf--d~kyI-  333 (499)
T KOG0281|consen  278 --EAVLHLRFS---NG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA--------VN-------VVDF--DDKYI-  333 (499)
T ss_pred             --ceeEEEEEe---CC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhh--------ee-------eecc--ccceE-
Confidence              889999994   33 999999999999999986542   2222333211        11       1222  33465 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                                 ++++.|.+|++|+ .      ....+++++ .+|...|-|+.+  .++++++| +|.+|++||+. .+.
T Consensus       334 -----------VsASgDRTikvW~-~------st~efvRtl-~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~-~G~  391 (499)
T KOG0281|consen  334 -----------VSASGDRTIKVWS-T------STCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE-CGA  391 (499)
T ss_pred             -----------EEecCCceEEEEe-c------cceeeehhh-hcccccceehhc--cCeEEEecCCCceEEEEecc-ccH
Confidence                       9999999999999 3      345666775 899988988776  57899999 99999999999 566


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      ++.+       +++|..-|.++.|+  . ..+++|+.||+|++||+.++..-.       .....-+......|++.|..
T Consensus       392 cLRv-------LeGHEeLvRciRFd--~-krIVSGaYDGkikvWdl~aaldpr-------a~~~~~Cl~~lv~hsgRVFr  454 (499)
T KOG0281|consen  392 CLRV-------LEGHEELVRCIRFD--N-KRIVSGAYDGKIKVWDLQAALDPR-------APASTLCLRTLVEHSGRVFR  454 (499)
T ss_pred             HHHH-------HhchHHhhhheeec--C-ceeeeccccceEEEEecccccCCc-------ccccchHHHhhhhccceeEE
Confidence            6654       79999999999996  3 569999999999999998763211       01111122234567889999


Q ss_pred             EEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          347 IKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       347 ~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      +.|.  ...|++++ |.+|.+||+.+
T Consensus       455 LQFD--~fqIvsssHddtILiWdFl~  478 (499)
T KOG0281|consen  455 LQFD--EFQIISSSHDDTILIWDFLN  478 (499)
T ss_pred             Eeec--ceEEEeccCCCeEEEEEcCC
Confidence            9995  56777775 68999999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=8.4e-27  Score=227.18  Aligned_cols=255  Identities=14%  Similarity=0.201  Sum_probs=190.7

Q ss_pred             eeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           32 VQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+...|.+++|++. +.+||+++.||+|+|||+.++.                       .+..+.+|.          
T Consensus       529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-----------------------~~~~~~~H~----------  575 (793)
T PLN00181        529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-----------------------LVTEMKEHE----------  575 (793)
T ss_pred             ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-----------------------EEEEecCCC----------
Confidence            345678999999984 7899999999999999987654                       345678888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEc-cCCCeeecc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-ANGGCGERN  189 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~  189 (408)
                        ..|++++|+|. ++.+|++|+.|++|++||+.++.....+..+.         .+.       ++.|. ++|..+   
T Consensus       576 --~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~---------~v~-------~v~~~~~~g~~l---  633 (793)
T PLN00181        576 --KRVWSIDYSSA-DPTLLASGSDDGSVKLWSINQGVSIGTIKTKA---------NIC-------CVQFPSESGRSL---  633 (793)
T ss_pred             --CCEEEEEEcCC-CCCEEEEEcCCCEEEEEECCCCcEEEEEecCC---------CeE-------EEEEeCCCCCEE---
Confidence              77999999752 46799999999999999999887766554321         222       56674 567776   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC---
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN---  265 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~---  265 (408)
                               ++|+.|+.|++|| +....     .+... ..+|...|.++.|. ++.+|+++ .|++|++||++...   
T Consensus       634 ---------atgs~dg~I~iwD-~~~~~-----~~~~~-~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~  696 (793)
T PLN00181        634 ---------AFGSADHKVYYYD-LRNPK-----LPLCT-MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGI  696 (793)
T ss_pred             ---------EEEeCCCeEEEEE-CCCCC-----ccceE-ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcccc
Confidence                     9999999999999 54321     12223 36888999999997 67788888 99999999997432   


Q ss_pred             --ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          266 --QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       266 --~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                        ..+.       .+.+|...+..++|+|++ .+|++|+.|+.|++|+.........  ..+.... .........|...
T Consensus       697 ~~~~l~-------~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s--~~~~~~~-~~~~~~~~~~~~~  765 (793)
T PLN00181        697 NETPLH-------SFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLS--YKFKTID-PVSGLEVDDASQF  765 (793)
T ss_pred             CCcceE-------EEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEE--EecccCC-cccccccCCCCcE
Confidence              1222       267899999999999999 8999999999999999876532100  0111110 0000112334568


Q ss_pred             eEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363          344 ISDIKFARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       344 i~~~~~spdg~~l~s~~-d~~v~~wd~  369 (408)
                      |.+++|+|++..|++|+ +|.|++|++
T Consensus       766 V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        766 ISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            99999999999999985 699999996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=3.7e-28  Score=194.38  Aligned_cols=274  Identities=15%  Similarity=0.249  Sum_probs=212.1

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      +..+-+.|..|||||++|++|+.||.|.+|+..+++..    +.|           .|...-.|.-+.            
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr----KDL-----------kYQAqd~fMMmd------------  263 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR----KDL-----------KYQAQDNFMMMD------------  263 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhh----hhh-----------hhhhhcceeecc------------
Confidence            34567889999999999999999999999999887642    221           122222333344            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ++|.|+.|+.+  .+.+|+|+.||.|++|.+++|.+++.+.....       ..+.       ++.|+.|+..+      
T Consensus       264 ~aVlci~FSRD--sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt-------kGvt-------~l~FSrD~Sqi------  321 (508)
T KOG0275|consen  264 DAVLCISFSRD--SEMLASGSQDGKIKVWRIETGQCLRRFDRAHT-------KGVT-------CLSFSRDNSQI------  321 (508)
T ss_pred             cceEEEeeccc--HHHhhccCcCCcEEEEEEecchHHHHhhhhhc-------cCee-------EEEEccCcchh------
Confidence            78999999754  77999999999999999999998876653211       1233       78999999998      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                            ++++.|.++++--       ...+++.+.+ .+|...|+...|.++|..++++ .||+|++|+..+ ..+...+
T Consensus       322 ------LS~sfD~tvRiHG-------lKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt-teC~~Tf  386 (508)
T KOG0275|consen  322 ------LSASFDQTVRIHG-------LKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT-TECLSTF  386 (508)
T ss_pred             ------hcccccceEEEec-------cccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCcc-hhhhhhc
Confidence                  9999999999754       3446777776 9999999999999999999999 999999999994 4555543


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                      +     ..+...+|.++-.-|.++..++++....+|.|.++... .+    +.+...+..         .+...+.+.||
T Consensus       387 k-----~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-vV----rsfsSGkRE---------gGdFi~~~lSp  447 (508)
T KOG0275|consen  387 K-----PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-VV----RSFSSGKRE---------GGDFINAILSP  447 (508)
T ss_pred             c-----CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-EE----eeeccCCcc---------CCceEEEEecC
Confidence            2     22345678899999998899999999999999998643 33    444333211         24566778999


Q ss_pred             CCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEE
Q 015363          352 NGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVM  390 (408)
Q Consensus       352 dg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  390 (408)
                      .|.++++. .|+.++.|.+.+ |++-+++..|+...-.+.
T Consensus       448 kGewiYcigED~vlYCF~~~s-G~LE~tl~VhEkdvIGl~  486 (508)
T KOG0275|consen  448 KGEWIYCIGEDGVLYCFSVLS-GKLERTLPVHEKDVIGLT  486 (508)
T ss_pred             CCcEEEEEccCcEEEEEEeec-Cceeeeeecccccccccc
Confidence            99999986 579999999998 899999999887644443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.6e-28  Score=200.92  Aligned_cols=245  Identities=14%  Similarity=0.183  Sum_probs=183.4

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeee-ccCCcccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~  108 (408)
                      ..++|..+|..+.||||.++|++|+.+..+++||+.++...                       ..+ +++.        
T Consensus       264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~-----------------------~~y~~~~~--------  312 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR-----------------------HLYPSGLG--------  312 (519)
T ss_pred             eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh-----------------------hhcccCcC--------
Confidence            45689999999999999999999999999999999998742                       111 2222        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          ..+.+.+|+|+  |..+++|+.|+++..||+....... .+....       -.+.       .++..+||+.+  
T Consensus       313 ----~S~~sc~W~pD--g~~~V~Gs~dr~i~~wdlDgn~~~~-W~gvr~-------~~v~-------dlait~Dgk~v--  369 (519)
T KOG0293|consen  313 ----FSVSSCAWCPD--GFRFVTGSPDRTIIMWDLDGNILGN-WEGVRD-------PKVH-------DLAITYDGKYV--  369 (519)
T ss_pred             ----CCcceeEEccC--CceeEecCCCCcEEEecCCcchhhc-cccccc-------ceeE-------EEEEcCCCcEE--
Confidence                55999999866  8899999999999999998764221 111111       1233       78999999998  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                ++...|..|++|++..+.       ++..  ..-..+|++++.+.+++++++. .+..+++||++.....
T Consensus       370 ----------l~v~~d~~i~l~~~e~~~-------dr~l--ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv  430 (519)
T KOG0293|consen  370 ----------LLVTVDKKIRLYNREARV-------DRGL--ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLV  430 (519)
T ss_pred             ----------EEEecccceeeechhhhh-------hhcc--ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHH
Confidence                      777899999998821111       1111  1223679999999999999998 9999999999943333


Q ss_pred             eeEeecCCCcccCCcCC--eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          268 FNIVDVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      .+        +.+|...  +-.-+|.--...++|+|+.|+.|+||+..+++.+    .++.||            +..|+
T Consensus       431 ~k--------Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll----~~LsGH------------s~~vN  486 (519)
T KOG0293|consen  431 RK--------YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL----AVLSGH------------SKTVN  486 (519)
T ss_pred             HH--------hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee----EeecCC------------cceee
Confidence            22        5566543  3334554333379999999999999999999765    677666            58899


Q ss_pred             EEEEccC-CCEEEEeC-CCeEEEEECCC
Q 015363          346 DIKFARN-GRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       346 ~~~~spd-g~~l~s~~-d~~v~~wd~~~  371 (408)
                      +++|+|. -.++|+|+ ||+|+||....
T Consensus       487 cVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  487 CVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            9999995 55778886 59999998764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.4e-26  Score=184.88  Aligned_cols=265  Identities=16%  Similarity=0.268  Sum_probs=194.9

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccc------------cccCC-------------C
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDY------------SMSRH-------------P   88 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~------------~~~~~-------------p   88 (408)
                      -.+.|+++.|+++|.+|++++.|.+++|||...+..    .+.+....+            .+..+             -
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~----~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ----VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce----eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence            367899999999999999999999999999887753    223322221            00000             1


Q ss_pred             ccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeE
Q 015363           89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF  168 (408)
Q Consensus        89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  168 (408)
                      +-++++.|.||.            ..|++++.+|-  ++.|++++.|++|++||++..++...+.....+          
T Consensus        89 dNkylRYF~GH~------------~~V~sL~~sP~--~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p----------  144 (311)
T KOG1446|consen   89 DNKYLRYFPGHK------------KRVNSLSVSPK--DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP----------  144 (311)
T ss_pred             cCceEEEcCCCC------------ceEEEEEecCC--CCeEEecccCCeEEeeEecCCCCceEEecCCCc----------
Confidence            445667788888            88999999876  569999999999999999988888777776554          


Q ss_pred             eecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEE
Q 015363          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF  248 (408)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  248 (408)
                             ..++.|+|-.+            +.+.....|++|| ++..+..+-....-  ..+.....+.+.|+|+|+++
T Consensus       145 -------i~AfDp~GLif------------A~~~~~~~IkLyD-~Rs~dkgPF~tf~i--~~~~~~ew~~l~FS~dGK~i  202 (311)
T KOG1446|consen  145 -------IAAFDPEGLIF------------ALANGSELIKLYD-LRSFDKGPFTTFSI--TDNDEAEWTDLEFSPDGKSI  202 (311)
T ss_pred             -------ceeECCCCcEE------------EEecCCCeEEEEE-ecccCCCCceeEcc--CCCCccceeeeEEcCCCCEE
Confidence                   57899999876            6666666999999 76654322211111  12445678999999999999


Q ss_pred             EEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccc
Q 015363          249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE  327 (408)
Q Consensus       249 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  327 (408)
                      +.+ ..+.+++.|.-.+. ....+...+    ....---+..|.|++ +++++|+.||+|.+|+++++..+    ..+.+
T Consensus       203 LlsT~~s~~~~lDAf~G~-~~~tfs~~~----~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~v----~~~~~  272 (311)
T KOG1446|consen  203 LLSTNASFIYLLDAFDGT-VKSTFSGYP----NAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKKV----AVLRG  272 (311)
T ss_pred             EEEeCCCcEEEEEccCCc-EeeeEeecc----CCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcEe----eEecC
Confidence            988 89999999988444 444433221    111112578999999 99999999999999999999765    45555


Q ss_pred             ccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECC
Q 015363          328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN  370 (408)
Q Consensus       328 ~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~  370 (408)
                      .           +.+.+.++.|+|.-.++++++. .+.+|=..
T Consensus       273 ~-----------~~~~~~~~~fnP~~~mf~sa~s-~l~fw~p~  303 (311)
T KOG1446|consen  273 P-----------NGGPVSCVRFNPRYAMFVSASS-NLVFWLPD  303 (311)
T ss_pred             C-----------CCCCccccccCCceeeeeecCc-eEEEEecc
Confidence            3           1467899999998777777654 78888654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=3.2e-28  Score=193.48  Aligned_cols=299  Identities=17%  Similarity=0.238  Sum_probs=213.1

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|+.++.+.+|+|||.++|||+.|-.|+|.|++...... ..+++...+ .-.   .-..+.++-.|.           
T Consensus       109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks-~~~em~~~~-~qa---~hPvIRTlYDH~-----------  172 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS-KPKEMISGD-TQA---RHPVIRTLYDHV-----------  172 (430)
T ss_pred             eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc-chhhhccCC-ccc---CCceEeehhhcc-----------
Confidence            3699999999999999999999999999999987432210 111111000 011   123556777777           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       +.|+++.|+|.  ...|+++++|++|+++|......++.++.-..      ...+.       ++.|+|.|.++     
T Consensus       173 -devn~l~FHPr--e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd------~~~vr-------siSfHPsGefl-----  231 (430)
T KOG0640|consen  173 -DEVNDLDFHPR--ETILISGSRDNTVKLFDFSKTSAKRAFKVFQD------TEPVR-------SISFHPSGEFL-----  231 (430)
T ss_pred             -Ccccceeecch--hheEEeccCCCeEEEEecccHHHHHHHHHhhc------cceee-------eEeecCCCceE-----
Confidence             77999999877  67999999999999999986544433322211      11233       68999999988     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             +.|.....+++|| +...+--....+    ...|.+.|+++.+++.+++.+++ .||.|++||=- +.++++.
T Consensus       232 -------lvgTdHp~~rlYd-v~T~QcfvsanP----d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-S~rCv~t  298 (430)
T KOG0640|consen  232 -------LVGTDHPTLRLYD-VNTYQCFVSANP----DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-SNRCVRT  298 (430)
T ss_pred             -------EEecCCCceeEEe-ccceeEeeecCc----ccccccceeEEEecCCccEEEEeccCCcEEeeccc-cHHHHHH
Confidence                   9999999999999 544332222221    36788999999999999999999 89999999987 5566654


Q ss_pred             eecCCCcccCCc-CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          271 VDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       271 ~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      +      -..|. ..|++..|..++ +++++.+.|..+++|.+.++..+    +.+.+-..       .+-..--+...|
T Consensus       299 ~------~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l----~~YtGAg~-------tgrq~~rtqAvF  360 (430)
T KOG0640|consen  299 I------GNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRML----KEYTGAGT-------TGRQKHRTQAVF  360 (430)
T ss_pred             H------HhhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCceE----EEEecCCc-------ccchhhhhhhhh
Confidence            3      23454 558999999999 99999999999999999999654    55544311       010112244567


Q ss_pred             ccCCCEEEEeCC--CeEEEEECCCCCCceeeeeecccccceEE-ecCCCeee
Q 015363          350 ARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKVM-HSSKNYFM  398 (408)
Q Consensus       350 spdg~~l~s~~d--~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  398 (408)
                      .....|++.-++  +.++-||.++..+.-..--+|.+..+.+. ++...-+|
T Consensus       361 NhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~Fm  412 (430)
T KOG0640|consen  361 NHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFM  412 (430)
T ss_pred             cCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCcee
Confidence            777778887653  89999999986555555567888755554 45555554

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.2e-27  Score=188.48  Aligned_cols=291  Identities=14%  Similarity=0.182  Sum_probs=194.3

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCC-Cccc-cccc-ccccccCCCccceeeeeccCCcc----
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG-GQRR-DLEM-MDYSMSRHPEFRYKTEFQSHEPE----  102 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~-~~~~-~~~~-~~~~~~~~p~~~~~~~~~~h~~~----  102 (408)
                      ...+|.+.|++++|+.||++|||++.|+.|+||++.+....- .+.| .++- ....+.+.|+.+.+...- |.+.    
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~-~~g~~l~v  159 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSV-KRGNKLCV  159 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEE-ccCCEEEE
Confidence            445899999999999999999999999999999998754311 2222 2211 122456666554332110 0000    


Q ss_pred             --------------ccccccc----ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCC
Q 015363          103 --------------FDYLKSL----EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN  164 (408)
Q Consensus       103 --------------~~~~~~~----~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  164 (408)
                                    +..+..+    .++..|..+-.  ..++.+|++++.|..|.+|+++ |+.+.....+...      
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~------  230 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS------  230 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccc------
Confidence                          0000000    23344445554  4568899999999999999999 6666554443211      


Q ss_pred             CCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC
Q 015363          165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD  244 (408)
Q Consensus       165 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  244 (408)
                               ....+.+|+|+++            ++++..-.|++|+++...++......+...+.+|...|..++|+++
T Consensus       231 ---------n~~aavSP~GRFi------------a~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~  289 (420)
T KOG2096|consen  231 ---------NYDAAVSPDGRFI------------AVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS  289 (420)
T ss_pred             ---------ccceeeCCCCcEE------------EEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence                     1146889999998            8889999999999665554432222222225899999999999999


Q ss_pred             CCEEEEe-cCCeEEEEeCCCCC---ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecc
Q 015363          245 GETFISA-DDLRINLWNLEISN---QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT  320 (408)
Q Consensus       245 ~~~l~~~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  320 (408)
                      .+.+++. .||++++||++-.-   +-..+++.-+..+..-.+....++.+|+| +.||.+ ....++++..++++..  
T Consensus       290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s-~gs~l~~~~se~g~~~--  365 (420)
T KOG2096|consen  290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVS-FGSDLKVFASEDGKDY--  365 (420)
T ss_pred             cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEee-cCCceEEEEcccCccc--
Confidence            9999998 89999999986311   11111111011122223334589999999 877765 4667999999988543  


Q ss_pred             cccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEE
Q 015363          321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWD  368 (408)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd  368 (408)
                        ..++           ..|...|.+++|+++|+++++++|..++++.
T Consensus       366 --~~~e-----------~~h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  366 --PELE-----------DIHSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             --hhHH-----------HhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence              2222           2346789999999999999999999999986

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.7e-27  Score=184.16  Aligned_cols=228  Identities=14%  Similarity=0.218  Sum_probs=174.0

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      +.+.+++|+++.+ ..+++++.||++++||+... ..+..++.|..        .|+       ++.|++..+..     
T Consensus        61 D~LfdV~Wse~~e-~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~--------EV~-------Svdwn~~~r~~-----  119 (311)
T KOG0277|consen   61 DGLFDVAWSENHE-NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKR--------EVY-------SVDWNTVRRRI-----  119 (311)
T ss_pred             cceeEeeecCCCc-ceEEEEecCceEEEeccCCCCcchhHHHhhhh--------heE-------Eecccccccee-----
Confidence            6799999998655 47889999999999996432 23333333322        344       56777665543     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                            +++++-|++|++|+ ..+      .+.+.++ .+|...|...+|+|. .+.|+++ .|+++++||++..++.+.
T Consensus       120 ------~ltsSWD~TiKLW~-~~r------~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~  185 (311)
T KOG0277|consen  120 ------FLTSSWDGTIKLWD-PNR------PNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS  185 (311)
T ss_pred             ------EEeeccCCceEeec-CCC------CcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE
Confidence                  47779999999999 433      2333444 899999999999996 5778887 899999999998776654


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                              +..|...+.++.|+.-.++++++|+.|+.|+.||+++-+   .|+..+.+|            .-.|..++|
T Consensus       186 --------i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh------------~~AVRkvk~  242 (311)
T KOG0277|consen  186 --------IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGH------------GLAVRKVKF  242 (311)
T ss_pred             --------EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecCC------------ceEEEEEec
Confidence                    467888999999999888999999999999999999764   445565555            578999999


Q ss_pred             ccCC-CEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEE-ecCCCeee
Q 015363          350 ARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVM-HSSKNYFM  398 (408)
Q Consensus       350 spdg-~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  398 (408)
                      ||.. ..|++++ |-+++|||...+...+.++..|.+....+. +++....+
T Consensus       243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~v  294 (311)
T KOG0277|consen  243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQV  294 (311)
T ss_pred             CcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCcee
Confidence            9964 5778887 699999999876778888888887654443 34444444

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=3.2e-26  Score=206.92  Aligned_cols=280  Identities=10%  Similarity=0.064  Sum_probs=190.5

Q ss_pred             eeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec
Q 015363           18 KFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ   97 (408)
Q Consensus        18 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~   97 (408)
                      ||.+.|+.....+  .|-..|.....++++..+++++.+.....|+..++...    -++...+.   ...   ....+.
T Consensus         5 k~rh~~g~~~k~~--~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v----~~~~~~G~---~~~---~~~~l~   72 (493)
T PTZ00421          5 RFRHTQGVPARPD--RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV----LKHTDYGK---LAS---NPPILL   72 (493)
T ss_pred             cccccccccCCcc--cceeccccccccCCCCCcEeECCceEEEEEecCCceEE----eecccccc---CCC---CCceEe
Confidence            5667777543322  35566777778888777888888888889987654321    00110000   000   012367


Q ss_pred             cCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE-------EEEeccCCCCcccCCCCCeEee
Q 015363           98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-------KKVFDWNVHPEKAAGNGPIFGS  170 (408)
Q Consensus        98 ~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~  170 (408)
                      +|.            +.|++++|+|. ++.+|++|+.|++|++||+.++..       ...+..+        ...|.  
T Consensus        73 GH~------------~~V~~v~fsP~-d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH--------~~~V~--  129 (493)
T PTZ00421         73 GQE------------GPIIDVAFNPF-DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH--------TKKVG--  129 (493)
T ss_pred             CCC------------CCEEEEEEcCC-CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC--------CCcEE--
Confidence            887            77999999872 366999999999999999976532       2222222        22344  


Q ss_pred             cCCceeeEEccCC-CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE
Q 015363          171 HVSAIPKSYMANG-GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  249 (408)
Q Consensus       171 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  249 (408)
                           .+.|+|++ ..+            ++++.|+.|++|| +..      ......+ ..|...|.+++|+|++.+|+
T Consensus       130 -----~l~f~P~~~~iL------------aSgs~DgtVrIWD-l~t------g~~~~~l-~~h~~~V~sla~spdG~lLa  184 (493)
T PTZ00421        130 -----IVSFHPSAMNVL------------ASAGADMVVNVWD-VER------GKAVEVI-KCHSDQITSLEWNLDGSLLC  184 (493)
T ss_pred             -----EEEeCcCCCCEE------------EEEeCCCEEEEEE-CCC------CeEEEEE-cCCCCceEEEEEECCCCEEE
Confidence                 68999986 455            8999999999999 543      2233333 67889999999999999999


Q ss_pred             Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCC-eEEEEEcCCCCceEEEEe----CCCeEEEEEcCCCceeccccc
Q 015363          250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSS----SKGSIRLIDMRQSALCDTHSK  323 (408)
Q Consensus       250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~  323 (408)
                      ++ .|+.|++||+++.. ....       +.+|... +..+.|.+++ ..+++++    .|+.|++||+++....   +.
T Consensus       185 tgs~Dg~IrIwD~rsg~-~v~t-------l~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~  252 (493)
T PTZ00421        185 TTSKDKKLNIIDPRDGT-IVSS-------VEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASP---YS  252 (493)
T ss_pred             EecCCCEEEEEECCCCc-EEEE-------EecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCc---ee
Confidence            99 89999999999544 3322       4556543 4567899988 5555543    4799999999876421   12


Q ss_pred             ccccccCCCCccccccccceeEEEEEccCCCEEEEe--CCCeEEEEECCCCCCceeeeee
Q 015363          324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DYMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       324 ~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      ....+.           ...+....|++++.+|+++  +|+.|++||+.+ ++++.....
T Consensus       253 ~~~~d~-----------~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~-~~~~~~~~~  300 (493)
T PTZ00421        253 TVDLDQ-----------SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN-ERLTFCSSY  300 (493)
T ss_pred             EeccCC-----------CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC-CceEEEeec
Confidence            222221           2356667899999988876  379999999997 566665543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2e-28  Score=198.47  Aligned_cols=281  Identities=16%  Similarity=0.231  Sum_probs=194.0

Q ss_pred             eeecccCcCcccceeeccceEEEEECCCC-CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec
Q 015363           19 FSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ   97 (408)
Q Consensus        19 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~   97 (408)
                      +...|..+..+...+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+                       ...++
T Consensus        50 leR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----------------------~~~f~  106 (433)
T KOG0268|consen   50 LERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----------------------IRTFK  106 (433)
T ss_pred             HHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------hheee
Confidence            34556666666778999999999999985 7899999999999999987654                       46789


Q ss_pred             cCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCC--cccCCCCCeEeecCCce
Q 015363           98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP--EKAAGNGPIFGSHVSAI  175 (408)
Q Consensus        98 ~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~  175 (408)
                      +|.            +.|..|++..    +.+++++.|++|+.|.++.. ...++.....-  ........+++.....+
T Consensus       107 AH~------------G~V~Gi~v~~----~~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i  169 (433)
T KOG0268|consen  107 AHE------------GLVRGICVTQ----TSFFTVGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQI  169 (433)
T ss_pred             ccc------------CceeeEEecc----cceEEecCCcceeeeeccCC-cceeeeccccccccccccccccccccCcee
Confidence            999            6799999942    47999999999999997653 22221111000  00000111121111111


Q ss_pred             eeEEccCCCeeec----------c-cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC
Q 015363          176 PKSYMANGGCGER----------N-FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD  244 (408)
Q Consensus       176 ~~~~~~~~~~l~~----------~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  244 (408)
                      .++--.-...+..          + .......++++++.|+.|.+|| ++.      ..+.+..  .-...-+.|+|+|.
T Consensus       170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD-~R~------~~Pl~KV--i~~mRTN~IswnPe  240 (433)
T KOG0268|consen  170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD-LRQ------ASPLKKV--ILTMRTNTICWNPE  240 (433)
T ss_pred             eecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe-ccc------CCcccee--eeeccccceecCcc
Confidence            2221111111111          1 1111223478889999999999 433      2222221  11234568999997


Q ss_pred             CCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccc
Q 015363          245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK  323 (408)
Q Consensus       245 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  323 (408)
                      .-.|++| .|..++.||++....++..       ..+|.+.|.++.|+|.| +-|++|+.|.+|+||..+.+..-    .
T Consensus       241 afnF~~a~ED~nlY~~DmR~l~~p~~v-------~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SR----d  308 (433)
T KOG0268|consen  241 AFNFVAANEDHNLYTYDMRNLSRPLNV-------HKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSR----D  308 (433)
T ss_pred             ccceeeccccccceehhhhhhcccchh-------hcccceeEEEeccCCCc-chhccccccceEEEeecCCCcch----h
Confidence            7778888 8999999999977766654       67899999999999999 99999999999999999877532    1


Q ss_pred             ccccccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCC
Q 015363          324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM  371 (408)
Q Consensus       324 ~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~  371 (408)
                      .+....           .+.|.++.||-|.+|+++|+| +.|++|....
T Consensus       309 iYhtkR-----------Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  309 IYHTKR-----------MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             hhhHhh-----------hheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            111111           257999999999999999985 9999999875

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=4.1e-27  Score=216.09  Aligned_cols=284  Identities=13%  Similarity=0.175  Sum_probs=206.0

Q ss_pred             cceeeecccCcCcc---------cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccC
Q 015363           16 EWKFSQVFGERTAG---------EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSR   86 (408)
Q Consensus        16 ~w~~~~~~~~~~~~---------~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   86 (408)
                      .|...++..+....         ....|.+.|+|+.|+|||++||+|+.|+.|.||.......     ..+-........
T Consensus        41 iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~-----~~~fgs~g~~~~  115 (942)
T KOG0973|consen   41 IWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS-----GTVFGSTGGAKN  115 (942)
T ss_pred             eeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC-----cccccccccccc
Confidence            78877765332211         2246999999999999999999999999999999874111     011111112233


Q ss_pred             CCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCC
Q 015363           87 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP  166 (408)
Q Consensus        87 ~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  166 (408)
                      .-.++....+.+|.            ..|.+++|+|  ++.+|++++.|++|.+|+..+.+...++..|...        
T Consensus       116 vE~wk~~~~l~~H~------------~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~--------  173 (942)
T KOG0973|consen  116 VESWKVVSILRGHD------------SDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSL--------  173 (942)
T ss_pred             cceeeEEEEEecCC------------CccceeccCC--CccEEEEecccceEEEEccccceeeeeeeccccc--------
Confidence            34677888899999            6699999976  4899999999999999999999888888887543        


Q ss_pred             eEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccc-ccccccceeeccccccceEEEEeCCCC
Q 015363          167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET-NLVAGCRRIYAHAHDYHINSISNNSDG  245 (408)
Q Consensus       167 v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~  245 (408)
                      |.       .+.|.|-|+++            ++-+.|++|++|+ ...-.. ....++...  ..-...++.+.|+|||
T Consensus       174 VK-------Gvs~DP~Gky~------------ASqsdDrtikvwr-t~dw~i~k~It~pf~~--~~~~T~f~RlSWSPDG  231 (942)
T KOG0973|consen  174 VK-------GVSWDPIGKYF------------ASQSDDRTLKVWR-TSDWGIEKSITKPFEE--SPLTTFFLRLSWSPDG  231 (942)
T ss_pred             cc-------ceEECCccCee------------eeecCCceEEEEE-cccceeeEeeccchhh--CCCcceeeecccCCCc
Confidence            33       68999999998            9999999999999 433111 011111110  1223457889999999


Q ss_pred             CEEEEe--c---CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC--------C----Cc----eEEEEeCC
Q 015363          246 ETFISA--D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--------H----CN----MLAYSSSK  304 (408)
Q Consensus       246 ~~l~~~--~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--------~----~~----~l~s~~~d  304 (408)
                      .+|++.  .   -.++.|.+-.+.+...        .+-+|..++.+++|+|.        |    +.    .+|+|+.|
T Consensus       232 ~~las~nA~n~~~~~~~IieR~tWk~~~--------~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD  303 (942)
T KOG0973|consen  232 HHLASPNAVNGGKSTIAIIERGTWKVDK--------DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD  303 (942)
T ss_pred             CeecchhhccCCcceeEEEecCCceeee--------eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence            999986  2   3466776665333232        26789999999999982        1    01    78999999


Q ss_pred             CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      ++|.||.....+    |+.....-.           ...|.+++|+|||..|++++ ||+|.+..+..
T Consensus       304 rSlSVW~T~~~R----Pl~vi~~lf-----------~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  304 RSLSVWNTALPR----PLFVIHNLF-----------NKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             ccEEEEecCCCC----chhhhhhhh-----------cCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            999999986553    323222221           24799999999999999987 89999999975

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=3.9e-27  Score=196.51  Aligned_cols=272  Identities=17%  Similarity=0.241  Sum_probs=201.4

Q ss_pred             eeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           32 VQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      +.|.+.|+.+.+-|. ..++|+++..+.|.|||.......   ..          ...+.+.-..+.+|+.+        
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~---~~----------~~~~~~Pdl~L~gH~~e--------  179 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSK---PK----------ASGECRPDLRLKGHEKE--------  179 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCc---cc----------ccccCCCceEEEeeccc--------
Confidence            569999999999997 557888899999999998765421   00          00023344567888843        


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-------EEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-------KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  183 (408)
                          -.+++|++...| .+++++.|++|.+||+......       ..+..+.        ..|-       .++|++..
T Consensus       180 ----g~glsWn~~~~g-~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~--------~~Ve-------DV~~h~~h  239 (422)
T KOG0264|consen  180 ----GYGLSWNRQQEG-TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE--------DVVE-------DVAWHPLH  239 (422)
T ss_pred             ----ccccccccccce-eEeeccCCCcEEEEeccccccCCccccceEEeecCC--------ccee-------hhhccccc
Confidence                667999987777 7899999999999999854321       1122221        1122       56777766


Q ss_pred             CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeC
Q 015363          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNL  261 (408)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~  261 (408)
                      ..+           +.+++.|+.+.+|| .+..    ..++.+. ..+|...|+|++|+|-+ .+||+| .|++|++||+
T Consensus       240 ~~l-----------F~sv~dd~~L~iwD-~R~~----~~~~~~~-~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDl  302 (422)
T KOG0264|consen  240 EDL-----------FGSVGDDGKLMIWD-TRSN----TSKPSHS-VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDL  302 (422)
T ss_pred             hhh-----------heeecCCCeEEEEE-cCCC----CCCCccc-ccccCCceeEEEeCCCCCceEEeccCCCcEEEeec
Confidence            654           57899999999999 5541    2333333 38999999999999975 566777 7999999999


Q ss_pred             CCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363          262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                      +...+++..       +.+|...|.++.|+|....+||+++.|+++.+||+..-.....  ........+.+.++..||.
T Consensus       303 RnL~~~lh~-------~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~--~eda~dgppEllF~HgGH~  373 (422)
T KOG0264|consen  303 RNLNKPLHT-------FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS--PEDAEDGPPELLFIHGGHT  373 (422)
T ss_pred             hhcccCcee-------ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC--hhhhccCCcceeEEecCcc
Confidence            977765543       8999999999999999989999999999999999976432100  1112222355557778999


Q ss_pred             ceeEEEEEccCCCEEEEe-C-CCeEEEEECC
Q 015363          342 ASISDIKFARNGRHILSR-D-YMTLKLWDIN  370 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~s~-~-d~~v~~wd~~  370 (408)
                      +.|.++.|+|+..+++++ + |+.+.||+..
T Consensus       374 ~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  374 AKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            999999999988877654 4 6999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=3.6e-26  Score=197.44  Aligned_cols=241  Identities=20%  Similarity=0.370  Sum_probs=190.4

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|...+.++.|+|++++|++++.+|.|++|++.+++.                       ...+..|.          
T Consensus        47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~-----------------------~~~~~~~~----------   93 (289)
T cd00200          47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC-----------------------VRTLTGHT----------   93 (289)
T ss_pred             EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc-----------------------eEEEeccC----------
Confidence            346888899999999999999999999999999886532                       34566666          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|.++.|+|.  +.++++++.|+.|++||+.+++....+..+.        +.+.       .+.++|++..+    
T Consensus        94 --~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~i~-------~~~~~~~~~~l----  150 (289)
T cd00200          94 --SYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHT--------DWVN-------SVAFSPDGTFV----  150 (289)
T ss_pred             --CcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCC--------CcEE-------EEEEcCcCCEE----
Confidence              67999999765  6688888889999999999777666555322        2233       68899988776    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              ++++.++.|++|| +..      .+....+ ..|...+.+++|+|+++.++++ .++.|++||++. .....
T Consensus       151 --------~~~~~~~~i~i~d-~~~------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~  213 (289)
T cd00200         151 --------ASSSQDGTIKLWD-LRT------GKCVATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST-GKCLG  213 (289)
T ss_pred             --------EEEcCCCcEEEEE-ccc------cccceeE-ecCccccceEEECCCcCEEEEecCCCcEEEEECCC-Cceec
Confidence                    7777799999999 532      2223333 5777789999999999888888 899999999984 33332


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      .       +..|...+.++.|+|++ .++++++.|+.|++||+.+++..    ..+..|            ...|.+++|
T Consensus       214 ~-------~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~----~~~~~~------------~~~i~~~~~  269 (289)
T cd00200         214 T-------LRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECV----QTLSGH------------TNSVTSLAW  269 (289)
T ss_pred             c-------hhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCceeE----EEcccc------------CCcEEEEEE
Confidence            2       45678899999999997 88888888999999999876543    444444            468999999


Q ss_pred             ccCCCEEEEeC-CCeEEEEE
Q 015363          350 ARNGRHILSRD-YMTLKLWD  368 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd  368 (408)
                      +|++.+|++++ |+.|++|+
T Consensus       270 ~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         270 SPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCCCEEEEecCCCeEEecC
Confidence            99999999985 69999996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=6.6e-27  Score=190.71  Aligned_cols=266  Identities=12%  Similarity=0.184  Sum_probs=189.5

Q ss_pred             cceeeccceEEEEECCC---CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccc
Q 015363           30 EEVQEVDIISAIEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~---~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  106 (408)
                      ...+|.++|.+++|...   ...|++++.|.++++|.++.++..                   .+.....+||+      
T Consensus       139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-------------------~~~~~~~~GHk------  193 (423)
T KOG0313|consen  139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-------------------VKALKVCRGHK------  193 (423)
T ss_pred             EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-------------------hhHHhHhcccc------
Confidence            34689999998887643   346999999999999999877642                   11223345888      


Q ss_pred             cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCC-------CCcccCCCCCeEeec---CCcee
Q 015363          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNV-------HPEKAAGNGPIFGSH---VSAIP  176 (408)
Q Consensus       107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~---~~~~~  176 (408)
                            ..|-+|...  ++|..+++|+.|.+|++|+..+......-....       .........++....   .....
T Consensus       194 ------~~V~sVsv~--~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~  265 (423)
T KOG0313|consen  194 ------RSVDSVSVD--SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS  265 (423)
T ss_pred             ------cceeEEEec--CCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee
Confidence                  789999985  558899999999999999943221111000000       000000011111110   22235


Q ss_pred             eEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCe
Q 015363          177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR  255 (408)
Q Consensus       177 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~  255 (408)
                      +.|.+.+ .            +++++.|.+|+.|| +...      .+...+  .....+++++.+|..++|++| .|..
T Consensus       266 V~w~d~~-v------------~yS~SwDHTIk~WD-letg------~~~~~~--~~~ksl~~i~~~~~~~Ll~~gssdr~  323 (423)
T KOG0313|consen  266 VVWSDAT-V------------IYSVSWDHTIKVWD-LETG------GLKSTL--TTNKSLNCISYSPLSKLLASGSSDRH  323 (423)
T ss_pred             EEEcCCC-c------------eEeecccceEEEEE-eecc------cceeee--ecCcceeEeecccccceeeecCCCCc
Confidence            6677633 3            39999999999999 4332      222211  223668999999999999999 9999


Q ss_pred             EEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcc
Q 015363          256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS  335 (408)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  335 (408)
                      |++||.+++...+..     .++.+|...|.++.|+|.....|++|+.|+++++||+|+.+   .|++.+.+|       
T Consensus       324 irl~DPR~~~gs~v~-----~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---~plydI~~h-------  388 (423)
T KOG0313|consen  324 IRLWDPRTGDGSVVS-----QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---APLYDIAGH-------  388 (423)
T ss_pred             eeecCCCCCCCceeE-----EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---CcceeeccC-------
Confidence            999999976554333     34889999999999999998999999999999999999875   345777777       


Q ss_pred             ccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          336 FFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       336 ~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                           ...|.++.|. ++.+|++|+ |++|+++.-..
T Consensus       389 -----~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  389 -----NDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             -----CceEEEEecc-CCceEEeccCcceEEEecccc
Confidence                 4789999998 577899985 89999997653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=3e-28  Score=204.47  Aligned_cols=259  Identities=14%  Similarity=0.219  Sum_probs=195.5

Q ss_pred             ccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceee
Q 015363           15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT   94 (408)
Q Consensus        15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   94 (408)
                      ..|++..-  ..-.-...+|..+|.+++|+++|..+.+++.|+.|++||++++++.                       .
T Consensus       240 klW~vy~~--~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~-----------------------~  294 (503)
T KOG0282|consen  240 KLWNVYDD--RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL-----------------------S  294 (503)
T ss_pred             EEEEEecC--cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE-----------------------E
Confidence            45666541  1222356789999999999999999999999999999999999752                       3


Q ss_pred             eeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCc
Q 015363           95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA  174 (408)
Q Consensus        95 ~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  174 (408)
                      .|...             ..++|+.|.|+. .+.|++|+.|+.|+.||+++++.++....+..        .+.      
T Consensus       295 ~f~~~-------------~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg--------~i~------  346 (503)
T KOG0282|consen  295 RFHLD-------------KVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG--------AIL------  346 (503)
T ss_pred             EEecC-------------CCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhh--------hee------
Confidence            33322             458999998874 26899999999999999999987765555432        343      


Q ss_pred             eeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC
Q 015363          175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD  253 (408)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  253 (408)
                       .+.|.++|+..            ++.+.++++++|+ ...      ..+.+.+...+.-...++..+|++.+++.- -|
T Consensus       347 -~i~F~~~g~rF------------issSDdks~riWe-~~~------~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d  406 (503)
T KOG0282|consen  347 -DITFVDEGRRF------------ISSSDDKSVRIWE-NRI------PVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD  406 (503)
T ss_pred             -eeEEccCCceE------------eeeccCccEEEEE-cCC------CccchhhcchhhccCcceecCCCCCeehhhccC
Confidence             68999999987            9999999999999 221      111111112222345688999999999987 89


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccCCc--CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  331 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  331 (408)
                      +.|.+|.+...-+. +..    ..+.+|.  +.-..+.||||| .+|++|+.||.+.+||.++-+++    ..++.|   
T Consensus       407 N~i~ifs~~~~~r~-nkk----K~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~kl~----~~lkah---  473 (503)
T KOG0282|consen  407 NYIAIFSTVPPFRL-NKK----KRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTKLV----SKLKAH---  473 (503)
T ss_pred             ceEEEEeccccccc-CHh----hhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhhhh----hccccC---
Confidence            99999997632221 111    2366665  446789999999 99999999999999999988665    666666   


Q ss_pred             CCccccccccceeEEEEEccCC-CEEEEeC-CCeEEEEE
Q 015363          332 GTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWD  368 (408)
Q Consensus       332 ~~~~~~~~h~~~i~~~~~spdg-~~l~s~~-d~~v~~wd  368 (408)
                               .+.+..+.|+|.. ..+|+|+ +|.|++|+
T Consensus       474 ---------~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  474 ---------DQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ---------CcceEEEEecCCCcceeEecccCceeEecC
Confidence                     4789999999954 4677776 89999996

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.2e-26  Score=202.30  Aligned_cols=237  Identities=14%  Similarity=0.240  Sum_probs=188.1

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeecc-CCccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEIEE  113 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~~~~~  113 (408)
                      .+.|+++.|+++|.+||+|..+|.|.|||......                       ...+.+ |.            .
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-----------------------~~~~~~~h~------------~  261 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-----------------------TRTLRGSHA------------S  261 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-----------------------cccccCCcC------------c
Confidence            78999999999999999999999999999876653                       245556 66            7


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE-eccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      .|-+++|.    +..+.+|+.|+.|..+|++..+.... ...|.        ..|.       .+.|++++..+      
T Consensus       262 rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~--------qeVC-------gLkws~d~~~l------  316 (484)
T KOG0305|consen  262 RVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHR--------QEVC-------GLKWSPDGNQL------  316 (484)
T ss_pred             eeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhccc--------ceee-------eeEECCCCCee------
Confidence            89999994    45899999999999999997764443 33332        2244       68999999998      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe---cCCeEEEEeCCCCCcee
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA---DDLRINLWNLEISNQSF  268 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~---~d~~i~iwd~~~~~~~~  268 (408)
                            ++|+.|+.+.+|| .      ....+...+ ..|...|..++|+|- ..+||+|   .|++|++||..++ ..+
T Consensus       317 ------ASGgnDN~~~Iwd-~------~~~~p~~~~-~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i  381 (484)
T KOG0305|consen  317 ------ASGGNDNVVFIWD-G------LSPEPKFTF-TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARI  381 (484)
T ss_pred             ------ccCCCccceEecc-C------CCccccEEE-eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEe
Confidence                  9999999999999 3      222334443 899999999999996 4788886   6999999999944 444


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEE-e-CCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-S-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      ..        ..-...|++|.|++.. +-|+++ + .+..|.||++.+.+..    ..+.+|            ...|..
T Consensus       382 ~~--------vdtgsQVcsL~Wsk~~-kEi~sthG~s~n~i~lw~~ps~~~~----~~l~gH------------~~RVl~  436 (484)
T KOG0305|consen  382 DS--------VDTGSQVCSLIWSKKY-KELLSTHGYSENQITLWKYPSMKLV----AELLGH------------TSRVLY  436 (484)
T ss_pred             cc--------cccCCceeeEEEcCCC-CEEEEecCCCCCcEEEEecccccee----eeecCC------------cceeEE
Confidence            32        2236789999999998 444444 3 3678999999886554    555555            688999


Q ss_pred             EEEccCCCEEEEe-CCCeEEEEECCC
Q 015363          347 IKFARNGRHILSR-DYMTLKLWDINM  371 (408)
Q Consensus       347 ~~~spdg~~l~s~-~d~~v~~wd~~~  371 (408)
                      ++++|||..+++| .|.++++|++-.
T Consensus       437 la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  437 LALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             EEECCCCCEEEEecccCcEEeccccC
Confidence            9999999999998 589999999965

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.6e-27  Score=182.06  Aligned_cols=266  Identities=17%  Similarity=0.272  Sum_probs=200.0

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      +.+|.+.|..+...-.|++|||++.|++|+|+....+.                    +..++.++.||.          
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~--------------------~s~ll~~L~Gh~----------   56 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG--------------------QSKLLAELTGHS----------   56 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC--------------------CceeeeEecCCC----------
Confidence            35799999999998889999999999999999987664                    234678899999          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ++|..++|.-..-|.+||+++.||.|.||.-.+++..+......+      .+++.       +++|.|.+--+    
T Consensus        57 --GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h------~~SVN-------sV~wapheygl----  117 (299)
T KOG1332|consen   57 --GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH------SASVN-------SVAWAPHEYGL----  117 (299)
T ss_pred             --CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh------cccce-------eecccccccce----
Confidence              889999997434588999999999999999998876655444333      22333       67887765432    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC---C-----------CEEEEe-cCCe
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---G-----------ETFISA-DDLR  255 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~-----------~~l~~~-~d~~  255 (408)
                            .+++++.||.|.+.+ ......    .....+..+|...|++++|.|.   |           ..|++| .|..
T Consensus       118 ------~LacasSDG~vsvl~-~~~~g~----w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~  186 (299)
T KOG1332|consen  118 ------LLACASSDGKVSVLT-YDSSGG----WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL  186 (299)
T ss_pred             ------EEEEeeCCCcEEEEE-EcCCCC----ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccc
Confidence                  248999999999987 444311    1122224789999999999986   4           568998 8999


Q ss_pred             EEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC---CceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363          256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH---CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  332 (408)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  332 (408)
                      |+||+.....-...      .++.+|.+.|+.++|.|.-   ...||+++.||++.||-.+..... -..+.++..    
T Consensus       187 VkiW~~~~~~w~~e------~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~-wk~tll~~f----  255 (299)
T KOG1332|consen  187 VKIWKFDSDSWKLE------RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP-WKKTLLEEF----  255 (299)
T ss_pred             eeeeecCCcchhhh------hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc-ccccccccC----
Confidence            99999985422222      2378999999999999974   357999999999999987632110 000111111    


Q ss_pred             CccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCc
Q 015363          333 TRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGP  375 (408)
Q Consensus       333 ~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~  375 (408)
                              ...+..+.||+.|+.|+.+ +|+.|.+|.-+.+|+-
T Consensus       256 --------~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw  291 (299)
T KOG1332|consen  256 --------PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKW  291 (299)
T ss_pred             --------CcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcE
Confidence                    3579999999999999987 5799999987765543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.8e-27  Score=201.56  Aligned_cols=249  Identities=17%  Similarity=0.260  Sum_probs=201.3

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      -.-+|.+..|-+..+++++|+.|..|+||+..+.+.                       +..|.+|.            +
T Consensus        54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek-----------------------V~~FeAH~------------D   98 (794)
T KOG0276|consen   54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK-----------------------VKTFEAHS------------D   98 (794)
T ss_pred             cccchhhheeeeccceEEEecCCceEEEEeccccee-----------------------eEEeeccc------------c
Confidence            456889999999999999999999999999998764                       57899999            8


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      .|.+++.+|..+  ++++++.|-+|++||.+.+ .+.+++++|.+-        |.       .++|.|.....      
T Consensus        99 yIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy--------VM-------qv~fnPkD~nt------  155 (794)
T KOG0276|consen   99 YIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHY--------VM-------QVAFNPKDPNT------  155 (794)
T ss_pred             ceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceE--------EE-------EEEecCCCccc------
Confidence            899999998855  9999999999999999864 567777777653        33       68898876543      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC--CEEEEe-cCCeEEEEeCCCCCceee
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                           +++++-|++|++|. +-.      ..+..++ .+|...|+++.+-+.|  .+|++| +|.+|+|||.. .+.|++
T Consensus       156 -----FaS~sLDrTVKVWs-lgs------~~~nfTl-~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ-tk~CV~  221 (794)
T KOG0276|consen  156 -----FASASLDRTVKVWS-LGS------PHPNFTL-EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ-TKSCVQ  221 (794)
T ss_pred             -----eeeeeccccEEEEE-cCC------CCCceee-eccccCcceEEeccCCCcceEEecCCCceEEEeecc-hHHHHH
Confidence                 48999999999999 433      3444554 8999999999998755  799999 99999999999 666775


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      +       +.+|...|..+.|+|.- .++++|+.||+++||+..+-+..    +++.-.            ...|++++-
T Consensus       222 T-------LeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE----~tLn~g------------leRvW~I~~  277 (794)
T KOG0276|consen  222 T-------LEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLE----KTLNYG------------LERVWCIAA  277 (794)
T ss_pred             H-------hhcccccceEEEecCCC-cEEEEecCCccEEEecCcceehh----hhhhcC------------CceEEEEee
Confidence            4       89999999999999999 89999999999999998887543    333222            368999999


Q ss_pred             ccCCCEEEEeCCCeEEEEECCCCCCceeee
Q 015363          350 ARNGRHILSRDYMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       350 spdg~~l~s~~d~~v~~wd~~~~~~~~~~~  379 (408)
                      .+.+..++.|.|....+..+.. ..|.-.+
T Consensus       278 ~k~~~~i~vG~Deg~i~v~lgr-eeP~vsM  306 (794)
T KOG0276|consen  278 HKGDGKIAVGFDEGSVTVKLGR-EEPAVSM  306 (794)
T ss_pred             cCCCCeEEEeccCCcEEEEccC-CCCceee
Confidence            9988889999774444455544 3444443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.3e-25  Score=170.99  Aligned_cols=252  Identities=15%  Similarity=0.201  Sum_probs=184.0

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .|.+.|.|.+|+|+|++||+|+.|.+|++..++...+.                         ..+|.-+|.+     +.
T Consensus        87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~-------------------------~~g~dle~nm-----hd  136 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCN-------------------------ATGHDLEFNM-----HD  136 (350)
T ss_pred             ccCccEEEEEecCccCeEEecCCCceEEEEeccccccc-------------------------ccCcceeeee-----cC
Confidence            58999999999999999999999999999877655431                         2333322221     22


Q ss_pred             cceeEEEEeecC--CCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSA--NSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~--~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      +.|.+++|..++  .+.+|++++ .|..|++-|..+++....+..+..        .+.        ..++-+|-.+   
T Consensus       137 gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg--------hil--------alyswn~~m~---  197 (350)
T KOG0641|consen  137 GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG--------HIL--------ALYSWNGAMF---  197 (350)
T ss_pred             CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc--------cEE--------EEEEecCcEE---
Confidence            779999998543  355666654 677888888888887777766643        232        2334445554   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeec------cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCC
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA------HAHDYHINSISNNSDGETFISA-DDLRINLWNLE  262 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~  262 (408)
                               ++|+.|.+|++|| ++-.      .++..+-      .-....|.++++.|.|++|++| .|....+||++
T Consensus       198 ---------~sgsqdktirfwd-lrv~------~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir  261 (350)
T KOG0641|consen  198 ---------ASGSQDKTIRFWD-LRVN------SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR  261 (350)
T ss_pred             ---------EccCCCceEEEEe-eecc------ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence                     9999999999999 4331      1222110      1113579999999999999999 99999999999


Q ss_pred             CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccc
Q 015363          263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA  342 (408)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  342 (408)
                       ++..++.       +..|...|+++.|+|.. .++++++.|..|++-|+...-.     +.+       +..+..+|..
T Consensus       262 -g~r~iq~-------f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla-----~el-------~~~vv~ehkd  320 (350)
T KOG0641|consen  262 -GGRMIQR-------FHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLA-----HEL-------PIMVVAEHKD  320 (350)
T ss_pred             -CCceeee-------eCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchh-----hcC-------ceEEEEeccC
Confidence             5655543       67799999999999999 9999999999999999875321     111       1223455668


Q ss_pred             eeEEEEEccCCCEEEEe-CCCeEEEEECC
Q 015363          343 SISDIKFARNGRHILSR-DYMTLKLWDIN  370 (408)
Q Consensus       343 ~i~~~~~spdg~~l~s~-~d~~v~~wd~~  370 (408)
                      .+..+.|+|..--+++. .|.++.+|-+.
T Consensus       321 k~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  321 KAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ceEEEEecCccceeeeccCcceEEEeccC
Confidence            88899999977656655 58999999774

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.2e-26  Score=193.64  Aligned_cols=242  Identities=14%  Similarity=0.222  Sum_probs=193.4

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      -.+.|.++.|..||++||.|...|.|+|+|.++..                       .+..+++|+            .
T Consensus        67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-----------------------iLR~~~ah~------------a  111 (487)
T KOG0310|consen   67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-----------------------ILRQLYAHQ------------A  111 (487)
T ss_pred             hccceeEEEeecCCeEEEccCCcCcEEEeccccHH-----------------------HHHHHhhcc------------C
Confidence            46789999999999999999999999999965422                       345788998            8


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      +|..+.|+|. ++..|++|+.|+.+++||+.+......+..+.+        .|.       +.+++|....+       
T Consensus       112 pv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD--------YVR-------~g~~~~~~~hi-------  168 (487)
T KOG0310|consen  112 PVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD--------YVR-------CGDISPANDHI-------  168 (487)
T ss_pred             ceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEEEEEecCCcc--------eeE-------eeccccCCCeE-------
Confidence            8999999985 457899999999999999999886434444432        244       56777765543       


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeec
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV  273 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~  273 (408)
                          +++|+.||.|++|| .+...     ....  .-.|..+|..+.+-|.|..+|++....|++||+-++++.+..   
T Consensus       169 ----vvtGsYDg~vrl~D-tR~~~-----~~v~--elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~---  233 (487)
T KOG0310|consen  169 ----VVTGSYDGKVRLWD-TRSLT-----SRVV--ELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS---  233 (487)
T ss_pred             ----EEecCCCceEEEEE-eccCC-----ceeE--EecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh---
Confidence                59999999999999 43321     1222  257889999999999999999998899999999977766543   


Q ss_pred             CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC
Q 015363          274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  353 (408)
Q Consensus       274 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg  353 (408)
                          +..|...|+|+++..++ ..|++|+-|+.+++||+.+.+.+    ..+.-.             ++|.+++.+|++
T Consensus       234 ----~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kvv----~s~~~~-------------~pvLsiavs~dd  291 (487)
T KOG0310|consen  234 ----MFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKVV----HSWKYP-------------GPVLSIAVSPDD  291 (487)
T ss_pred             ----hhcccceEEEEEeecCC-ceEeecccccceEEEEccceEEE----Eeeecc-------------cceeeEEecCCC
Confidence                45599999999999999 99999999999999998776554    444443             789999999999


Q ss_pred             CEEEEe-CCCeEEEEECC
Q 015363          354 RHILSR-DYMTLKLWDIN  370 (408)
Q Consensus       354 ~~l~s~-~d~~v~~wd~~  370 (408)
                      +.++.| ++|.+.+=+..
T Consensus       292 ~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  292 QTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             ceEEEecccceeeeehhh
Confidence            999999 67887776444

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=5.3e-26  Score=188.55  Aligned_cols=278  Identities=17%  Similarity=0.276  Sum_probs=208.8

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ...|.++...|....++||+.|..+.++|...++                       .+..|.||.            ..
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-----------------------~l~~~~Gh~------------kk  263 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-----------------------ILATLKGHT------------KK  263 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhh-----------------------hhhhccCcc------------eE
Confidence            4568899999887889999999999999987665                       467899999            77


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      |+.+.++|.  ...+++++.|..|++|.............+..        .|.       .+..+|+|.++        
T Consensus       264 i~~v~~~~~--~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~--------~V~-------~ls~h~tgeYl--------  318 (506)
T KOG0289|consen  264 ITSVKFHKD--LDTVITASADEIIRVWSVPLSSEPTSSRPHEE--------PVT-------GLSLHPTGEYL--------  318 (506)
T ss_pred             EEEEEeccc--hhheeecCCcceEEeeccccccCccccccccc--------cce-------eeeeccCCcEE--------
Confidence            999999866  55899999999999999876654444433322        233       57888999988        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceee-ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                          ++++.|+...+.| +....      +.... .....-.+++.+|+|||.+|.+| .|+.|++||+......-    
T Consensus       319 ----lsAs~d~~w~Fsd-~~~g~------~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a----  383 (506)
T KOG0289|consen  319 ----LSASNDGTWAFSD-ISSGS------QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA----  383 (506)
T ss_pred             ----EEecCCceEEEEE-ccCCc------EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc----
Confidence                9999999998888 43321      11111 01223458999999999999999 99999999999554332    


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  352 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd  352 (408)
                          .+.+|.++|..++|+.+| .+||+++.|+.|++||+|..+..    +++...+           ...+.++.|.+.
T Consensus       384 ----~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~----kt~~l~~-----------~~~v~s~~fD~S  443 (506)
T KOG0289|consen  384 ----KFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNF----KTIQLDE-----------KKEVNSLSFDQS  443 (506)
T ss_pred             ----cCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhccc----ceeeccc-----------cccceeEEEcCC
Confidence                388999999999999999 99999999999999999987543    5555443           136999999999


Q ss_pred             CCEEEEeC-CCeEEEEECCC-CCCceeeeeecccccceEEecCCCeee---eeeceeeec
Q 015363          353 GRHILSRD-YMTLKLWDINM-DSGPVATFQVHEHLRPKVMHSSKNYFM---GLDNIHTLY  407 (408)
Q Consensus       353 g~~l~s~~-d~~v~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~  407 (408)
                      |.+|+.++ +=.|++++-.+ .-.++..+..|.+....+..-.....+   ++|++-+||
T Consensus       444 Gt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  444 GTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             CCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence            99999884 45555555322 135667777777666666644444443   457766665

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.5e-26  Score=174.98  Aligned_cols=218  Identities=17%  Similarity=0.331  Sum_probs=176.0

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ++|..+.|+  -+|++.++++.|++|++|+...+.+++....+.++        +.       ..+.+.|...+      
T Consensus        18 gaV~avryN--~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E--------Vl-------D~~~s~Dnskf------   74 (307)
T KOG0316|consen   18 GAVRAVRYN--VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE--------VL-------DAALSSDNSKF------   74 (307)
T ss_pred             cceEEEEEc--cCCCEEEEcCCCceEEeecccccceeeeecCCCce--------ee-------ecccccccccc------
Confidence            889999995  56899999999999999999999999998888765        22       34444455444      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC-ceeeE
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QSFNI  270 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~  270 (408)
                            ++++.|+.+.+|| +..      ++..+.+ .+|...|+.++|+.+...+++| .|.++++||.+... +++++
T Consensus        75 ------~s~GgDk~v~vwD-V~T------Gkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi  140 (307)
T KOG0316|consen   75 ------ASCGGDKAVQVWD-VNT------GKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI  140 (307)
T ss_pred             ------ccCCCCceEEEEE-ccc------Ceeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch
Confidence                  9999999999999 533      4455554 8999999999999999999999 89999999998432 23443


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                             +......|.++..+  + ..+++|+.||+++.||+|.|...    ..+-+              .+|++++|+
T Consensus       141 -------ldea~D~V~Si~v~--~-heIvaGS~DGtvRtydiR~G~l~----sDy~g--------------~pit~vs~s  192 (307)
T KOG0316|consen  141 -------LDEAKDGVSSIDVA--E-HEIVAGSVDGTVRTYDIRKGTLS----SDYFG--------------HPITSVSFS  192 (307)
T ss_pred             -------hhhhcCceeEEEec--c-cEEEeeccCCcEEEEEeecceee----hhhcC--------------CcceeEEec
Confidence                   55667788888886  4 56999999999999999999654    33333              479999999


Q ss_pred             cCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEe-cCCCe
Q 015363          351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMH-SSKNY  396 (408)
Q Consensus       351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  396 (408)
                      +|++.+++++ |+++++-|-.+ |++++.+.+|.....++.+ +.+.+
T Consensus       193 ~d~nc~La~~l~stlrLlDk~t-GklL~sYkGhkn~eykldc~l~qsd  239 (307)
T KOG0316|consen  193 KDGNCSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEYKLDCCLNQSD  239 (307)
T ss_pred             CCCCEEEEeeccceeeecccch-hHHHHHhcccccceeeeeeeecccc
Confidence            9999988886 79999999998 8999999999987655543 44433

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=3.1e-25  Score=200.50  Aligned_cols=255  Identities=14%  Similarity=0.170  Sum_probs=178.3

Q ss_pred             cceeeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ...+|.+.|++++|+| ++++||+|+.|++|+|||+.+.....                .....+..+.+|.        
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~----------------~~~~~l~~L~gH~--------  125 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ----------------NISDPIVHLQGHT--------  125 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc----------------ccCcceEEecCCC--------
Confidence            4568999999999999 88999999999999999987653210                0112345678888        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          ..|.+++|+|.. +.+|++++.|++|++||+.+++....+..+.        ..+.       ++.|+|+|..+  
T Consensus       126 ----~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~--------~~V~-------sla~spdG~lL--  183 (493)
T PTZ00421        126 ----KKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHS--------DQIT-------SLEWNLDGSLL--  183 (493)
T ss_pred             ----CcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCC--------CceE-------EEEEECCCCEE--
Confidence                779999998753 2589999999999999999988766665442        2344       78999999987  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccc-eEEEEeCCCCCEEEEe-----cCCeEEEEeCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH-INSISNNSDGETFISA-----DDLRINLWNLE  262 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~-----~d~~i~iwd~~  262 (408)
                                ++++.|+.|++|| +...      .....+ .+|... +..+.|.+++..++++     .|+.|++||++
T Consensus       184 ----------atgs~Dg~IrIwD-~rsg------~~v~tl-~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        184 ----------CTTSKDKKLNIID-PRDG------TIVSSV-EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             ----------EEecCCCEEEEEE-CCCC------cEEEEE-ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence                      9999999999999 5432      222332 556543 4467788887777653     37999999998


Q ss_pred             CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe-CCCeEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363          263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                      .....+....      ..+...+....|++++ .+|++++ .|+.|++||+..++..    ......           +.
T Consensus       246 ~~~~p~~~~~------~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~----~~~~~~-----------s~  303 (493)
T PTZ00421        246 KMASPYSTVD------LDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNERLT----FCSSYS-----------SV  303 (493)
T ss_pred             CCCCceeEec------cCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCceE----EEeecc-----------CC
Confidence            6555544321      1123446667899999 7777776 5999999999988643    222211           12


Q ss_pred             ceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363          342 ASISDIKFARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~s~~d~~v~~wd~~~  371 (408)
                      .++..++|.|.-. +-+..--..+++.+..
T Consensus       304 ~~~~g~~~~pk~~-~dv~~~Ei~r~~~l~~  332 (493)
T PTZ00421        304 EPHKGLCMMPKWS-LDTRKCEIARFYALTY  332 (493)
T ss_pred             CCCcceEeccccc-ccccceeeeEEEEecC
Confidence            4577788888421 1111112446666653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.3e-25  Score=175.03  Aligned_cols=279  Identities=16%  Similarity=0.215  Sum_probs=199.0

Q ss_pred             eeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCC-CCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           33 QEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDT-RDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        33 ~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...+.|.+|+||| ...+++.||.||+||+|+++.. ...                      -.....|.          
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~----------------------~ka~~~~~----------   72 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV----------------------PKAQQSHD----------   72 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCccc----------------------chhhhccC----------
Confidence            3568899999999 4667789999999999999864 211                      02344555          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC--eeec
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG--CGER  188 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~l~~  188 (408)
                        ++|.+++|+  .+|+.+++|+.|+.+++||+.+++..++...         ++.+.       .+.|.+...  +|  
T Consensus        73 --~PvL~v~Ws--ddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H---------d~pvk-------t~~wv~~~~~~cl--  130 (347)
T KOG0647|consen   73 --GPVLDVCWS--DDGSKVFSGGCDKQAKLWDLASGQVSQVAAH---------DAPVK-------TCHWVPGMNYQCL--  130 (347)
T ss_pred             --CCeEEEEEc--cCCceEEeeccCCceEEEEccCCCeeeeeec---------cccee-------EEEEecCCCccee--
Confidence              889999996  5589999999999999999999987665443         23344       455555443  55  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                ++|+.|++|+.|| .+...      ++..+  .-...++++..  -..+++.+ .++.|.+|+++.+...
T Consensus       131 ----------~TGSWDKTlKfWD-~R~~~------pv~t~--~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te  189 (347)
T KOG0647|consen  131 ----------VTGSWDKTLKFWD-TRSSN------PVATL--QLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTE  189 (347)
T ss_pred             ----------Eecccccceeecc-cCCCC------eeeee--eccceeeehhc--cCceeEEEecCCcEEEEEcCCCcch
Confidence                      9999999999999 44321      11111  11234444433  34677778 8999999999855544


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      ++.+      .....-.+++++..++. ...|.|+-+|++.|-.+..+...  .-.+|+.|...+.   ..+-.-.|+++
T Consensus       190 ~k~~------~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~--~nFtFkCHR~~~~---~~~~VYaVNsi  257 (347)
T KOG0647|consen  190 FKRI------ESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPK--DNFTFKCHRSTNS---VNDDVYAVNSI  257 (347)
T ss_pred             hhhh------cCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCcc--CceeEEEeccCCC---CCCceEEecce
Confidence            4332      12235568899999998 77799999999999998875321  1156666753221   01112468999


Q ss_pred             EEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee
Q 015363          348 KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG  399 (408)
Q Consensus       348 ~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (408)
                      +|+|.-..|+++ +||++.+||-+. ...+++.+.|.....+...-..+.+++
T Consensus       258 ~FhP~hgtlvTaGsDGtf~FWDkda-r~kLk~s~~~~qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  258 AFHPVHGTLVTAGSDGTFSFWDKDA-RTKLKTSETHPQPITCCSFNRNGSIFA  309 (347)
T ss_pred             EeecccceEEEecCCceEEEecchh-hhhhhccCcCCCccceeEecCCCCEEE
Confidence            999977777765 799999999987 688999999999888888777777653

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=9.7e-26  Score=204.04  Aligned_cols=260  Identities=17%  Similarity=0.289  Sum_probs=204.0

Q ss_pred             cceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeee
Q 015363           16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE   95 (408)
Q Consensus        16 ~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   95 (408)
                      .|+..+.+-  ......+|.+.|+++++..-+.+|++|+.|.++++||..++.+                       ...
T Consensus       232 ~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-----------------------~~~  286 (537)
T KOG0274|consen  232 LWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-----------------------THS  286 (537)
T ss_pred             EeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE-----------------------EEE
Confidence            566666433  2223678999999999988788999999999999999988874                       578


Q ss_pred             eccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCce
Q 015363           96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI  175 (408)
Q Consensus        96 ~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  175 (408)
                      +.+|.            +.|.++...    ...+++|+.|.+|++|++.++.++.++..+..        .|.       
T Consensus       287 l~gh~------------stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~--------~V~-------  335 (537)
T KOG0274|consen  287 LQGHT------------SSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG--------PVN-------  335 (537)
T ss_pred             ecCCC------------ceEEEEEcc----CceEeeccCCceEEEEeccCcceEEEeccccc--------cEE-------
Confidence            89999            779999884    23788889999999999999999998886433        343       


Q ss_pred             eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL  254 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~  254 (408)
                      ++...  +..+            ++|+.|+.|++|+ +.      ..+|++.+ .+|..+|.++.+.+. ..+++| .|+
T Consensus       336 ~v~~~--~~~l------------vsgs~d~~v~VW~-~~------~~~cl~sl-~gH~~~V~sl~~~~~-~~~~Sgs~D~  392 (537)
T KOG0274|consen  336 CVQLD--EPLL------------VSGSYDGTVKVWD-PR------TGKCLKSL-SGHTGRVYSLIVDSE-NRLLSGSLDT  392 (537)
T ss_pred             EEEec--CCEE------------EEEecCceEEEEE-hh------hceeeeee-cCCcceEEEEEecCc-ceEEeeeecc
Confidence            33333  5555            9999999999999 43      57777876 889999999988766 788888 899


Q ss_pred             eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCc
Q 015363          255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  334 (408)
Q Consensus       255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  334 (408)
                      +|++||+++..+++..       +.+|..-+..+.+  .+ ++|++++.|++|++||..+++..    ++++++      
T Consensus       393 ~IkvWdl~~~~~c~~t-------l~~h~~~v~~l~~--~~-~~Lvs~~aD~~Ik~WD~~~~~~~----~~~~~~------  452 (537)
T KOG0274|consen  393 TIKVWDLRTKRKCIHT-------LQGHTSLVSSLLL--RD-NFLVSSSADGTIKLWDAEEGECL----RTLEGR------  452 (537)
T ss_pred             ceEeecCCchhhhhhh-------hcCCccccccccc--cc-ceeEeccccccEEEeecccCcee----eeeccC------
Confidence            9999999955355543       7888888866655  45 78999999999999999998765    566552      


Q ss_pred             cccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeee
Q 015363          335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       335 ~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~  381 (408)
                           |.+.|..+++. +...|.++.|+++++||+++ +++.+.+-.
T Consensus       453 -----~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~-~~~~~~l~~  492 (537)
T KOG0274|consen  453 -----HVGGVSALALG-KEEILCSSDDGSVKLWDLRS-GTLIRTLLS  492 (537)
T ss_pred             -----CcccEEEeecC-cceEEEEecCCeeEEEeccc-Cchhhhhhh
Confidence                 14678888876 34455555789999999998 687776633

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=9.9e-26  Score=198.99  Aligned_cols=246  Identities=14%  Similarity=0.239  Sum_probs=197.2

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      +-+.|..|-|.++++++|...|.+.+||+.....                       +-..++|.            +.|
T Consensus       413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l-----------------------~Eti~AHd------------gaI  457 (888)
T KOG0306|consen  413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASL-----------------------VETIRAHD------------GAI  457 (888)
T ss_pred             ccEEEEEecCCCceEEEeccCCceEEEEeehhhh-----------------------hhhhhccc------------cce
Confidence            3678999999999999999999999999886653                       34567888            779


Q ss_pred             eEEEEeecCCCcEEEEEeCCCeEEEEEcCC-----CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      .+++.+|+  +..+++|+.|.+|++||..-     +...+++..+..        .+....+...++.++|||+++    
T Consensus       458 Wsi~~~pD--~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~--------rtLel~ddvL~v~~Spdgk~L----  523 (888)
T KOG0306|consen  458 WSISLSPD--NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT--------RTLELEDDVLCVSVSPDGKLL----  523 (888)
T ss_pred             eeeeecCC--CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc--------eEEeccccEEEEEEcCCCcEE----
Confidence            99999765  77899999999999999752     222222222221        122223334489999999998    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              +.+--|.++++|- +....-      .-. +-+|.-+|.|+..+||++.+++| .|..|++|-++ .+.|.+
T Consensus       524 --------aVsLLdnTVkVyf-lDtlKF------fls-LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd-FGDCHK  586 (888)
T KOG0306|consen  524 --------AVSLLDNTVKVYF-LDTLKF------FLS-LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD-FGDCHK  586 (888)
T ss_pred             --------EEEeccCeEEEEE-ecceee------eee-ecccccceeEEeccCCcCeEEeccCCCceEEeccc-cchhhh
Confidence                    8899999999987 433221      112 47999999999999999999999 89999999998 555654


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      .       +-+|...|+++.|-|.. ..|.+++.|+.|+-||-.....+    ..+.+|            ...|++++.
T Consensus       587 S-------~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~i----q~L~~H------------~~ev~cLav  642 (888)
T KOG0306|consen  587 S-------FFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEI----QKLDGH------------HSEVWCLAV  642 (888)
T ss_pred             h-------hhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhhhh----eeeccc------------hheeeeeEE
Confidence            3       67899999999999988 99999999999999998877544    666666            588999999


Q ss_pred             ccCCCEEEEeC-CCeEEEEECCC
Q 015363          350 ARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      +|+|.++++++ |.+|++|....
T Consensus       643 ~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  643 SPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             cCCCCeEEeccCCceeEeeeccC
Confidence            99999999996 79999998864

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=1e-24  Score=172.50  Aligned_cols=305  Identities=14%  Similarity=0.215  Sum_probs=206.1

Q ss_pred             eeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           32 VQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..|.+.|+++.+.+. |+++++|+.||.|.+||++.....       +..++... +-...-...-.+|.          
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~-------e~s~li~k-~~c~v~~~h~~~Hk----------  101 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY-------EASGLIAK-HKCIVAKQHENGHK----------  101 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccch-------hhccceeh-eeeeccccCCccce----------
Confidence            469999999999985 999999999999999999865410       00000000 00000001123344          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccC--CCeeec
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN--GGCGER  188 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~l~~  188 (408)
                        -.|.++.|.|-.+| .|.+++.|.++++||+.+-+....++.+         +.|+       +-+++|-  ..+|  
T Consensus       102 --y~iss~~WyP~DtG-mFtssSFDhtlKVWDtnTlQ~a~~F~me---------~~VY-------shamSp~a~sHcL--  160 (397)
T KOG4283|consen  102 --YAISSAIWYPIDTG-MFTSSSFDHTLKVWDTNTLQEAVDFKME---------GKVY-------SHAMSPMAMSHCL--  160 (397)
T ss_pred             --eeeeeeEEeeecCc-eeecccccceEEEeecccceeeEEeecC---------ceee-------hhhcChhhhcceE--
Confidence              67999999997666 8999999999999999998877777663         3344       2344442  2343  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEE-EEe-cCCeEEEEeCCCCCc
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~d~~i~iwd~~~~~~  266 (408)
                               +++|..+-.|++.| +.      .+.+...+ .+|...|.++.|+|...++ ++| .||.|++||++.-..
T Consensus       161 ---------iA~gtr~~~VrLCD-i~------SGs~sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg  223 (397)
T KOG4283|consen  161 ---------IAAGTRDVQVRLCD-IA------SGSFSHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG  223 (397)
T ss_pred             ---------EEEecCCCcEEEEe-cc------CCcceeee-ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccc
Confidence                     47888999999999 43      34555554 9999999999999998765 456 899999999996545


Q ss_pred             eeeEeecCC-------CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccc
Q 015363          267 SFNIVDVKP-------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE  339 (408)
Q Consensus       267 ~~~~~~~~~-------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (408)
                      ++..++...       .+-..|.+.|..++|..++ .++++++.|.++++|+..+|....++..........        
T Consensus       224 cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~--------  294 (397)
T KOG4283|consen  224 CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT--------  294 (397)
T ss_pred             eeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCcccccccccccccccc--------
Confidence            665554322       1235688999999999999 999999999999999999886443222211111100        


Q ss_pred             ccceeEEEEEccCCC-EEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCe---eeeeeceeeec
Q 015363          340 IIASISDIKFARNGR-HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNY---FMGLDNIHTLY  407 (408)
Q Consensus       340 h~~~i~~~~~spdg~-~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~  407 (408)
                      | -.+. +. +-+.. ++..-.++.+.++++-. +..++.+..|  .+...|.+|.++   +.++|...++|
T Consensus       295 ~-~~~~-~~-~~~s~vfv~~p~~~~lall~~~s-gs~ir~l~~h--~k~i~c~~~~~~fq~~~tg~~d~ni~  360 (397)
T KOG4283|consen  295 S-FAVH-IQ-SMDSDVFVLFPNDGSLALLNLLE-GSFVRRLSTH--LKRINCAAYRPDFEQCFTGDMNGNIY  360 (397)
T ss_pred             c-ceEE-Ee-ecccceEEEEecCCeEEEEEccC-ceEEEeeecc--cceeeEEeecCchhhhhccccCCccc
Confidence            0 0111 22 22222 22222457888888876 7888888888  566666666665   45666655554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=4e-25  Score=200.05  Aligned_cols=252  Identities=13%  Similarity=0.203  Sum_probs=199.3

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      |...|.+..|.  +.++++++.+++|++|+..++..                      ....+.+|.            +
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------------i~~~l~GH~------------g  250 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------------ILTRLVGHF------------G  250 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceE----------------------EEeeccCCC------------C
Confidence            56778999998  55799999999999999877653                      334489999            7


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      .|.++++..  -+.++++|+.|.++++||..++++..++.++...                 ..+.......+       
T Consensus       251 ~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st-----------------v~~~~~~~~~~-------  304 (537)
T KOG0274|consen  251 GVWGLAFPS--GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS-----------------VRCLTIDPFLL-------  304 (537)
T ss_pred             CceeEEEec--CCCEEEEEecCCcEEeEecCCCcEEEEecCCCce-----------------EEEEEccCceE-------
Confidence            799999953  3569999999999999999999999999877543                 12333333333       


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                           ++|+.|.+|++|+ +.      .+.+.+.+ .+|..+|+++..+  +.++++| .|++|++||+. ..+++..  
T Consensus       305 -----~sgs~D~tVkVW~-v~------n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~s--  366 (537)
T KOG0274|consen  305 -----VSGSRDNTVKVWD-VT------NGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLKS--  366 (537)
T ss_pred             -----eeccCCceEEEEe-cc------CcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhh-hceeeee--
Confidence                 7789999999999 54      24555554 6699999999987  7889998 89999999999 5666654  


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  352 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd  352 (408)
                           +.+|...|.++.+.+.  ..+++|+.|++|++||+++..   +++.++.+|            .+-+..+.+  .
T Consensus       367 -----l~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h------------~~~v~~l~~--~  422 (537)
T KOG0274|consen  367 -----LSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGH------------TSLVSSLLL--R  422 (537)
T ss_pred             -----ecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh---hhhhhhcCC------------ccccccccc--c
Confidence                 7889999999999875  579999999999999999883   123666666            456655544  5


Q ss_pred             CCEEEEeC-CCeEEEEECCCCCCceeeeeec-ccccceEE
Q 015363          353 GRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKVM  390 (408)
Q Consensus       353 g~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~  390 (408)
                      +++|++++ |++|++||..+ +++++++.++ ......+.
T Consensus       423 ~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~v~~l~  461 (537)
T KOG0274|consen  423 DNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGGVSALA  461 (537)
T ss_pred             cceeEeccccccEEEeeccc-CceeeeeccCCcccEEEee
Confidence            78999985 89999999997 8999999994 34444443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=8.8e-27  Score=179.82  Aligned_cols=245  Identities=13%  Similarity=0.208  Sum_probs=189.2

Q ss_pred             ccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        29 ~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      +.+.+|.+.|+...++.+...-|+++.|-+-+|||.-++..                                    +.+
T Consensus        53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde------------------------------------lhs   96 (334)
T KOG0278|consen   53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE------------------------------------LHS   96 (334)
T ss_pred             EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh------------------------------------hhh
Confidence            35668999999999999988899999999999999776653                                    333


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      ++|+.-|..++|+  .|.++|++|+.+..+||+|++..+.... +...      ..+.|.       .+.|....+++  
T Consensus        97 f~hkhivk~~af~--~ds~~lltgg~ekllrvfdln~p~App~-E~~g------htg~Ir-------~v~wc~eD~~i--  158 (334)
T KOG0278|consen   97 FEHKHIVKAVAFS--QDSNYLLTGGQEKLLRVFDLNRPKAPPK-EISG------HTGGIR-------TVLWCHEDKCI--  158 (334)
T ss_pred             hhhhheeeeEEec--ccchhhhccchHHHhhhhhccCCCCCch-hhcC------CCCcce-------eEEEeccCceE--
Confidence            4444669999996  4577999999999999999987653221 1111      133444       56777777887  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCcee
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF  268 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~  268 (408)
                                ++...|++|++|| .+...      ..+.+  ....+|+++.++++|++|.++..+.|.+||..+.+ .+
T Consensus       159 ----------LSSadd~tVRLWD-~rTgt------~v~sL--~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~-~l  218 (334)
T KOG0278|consen  159 ----------LSSADDKTVRLWD-HRTGT------EVQSL--EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG-LL  218 (334)
T ss_pred             ----------EeeccCCceEEEE-eccCc------EEEEE--ecCCCCcceeeccCCCEEEEecCceeEEecccccc-ce
Confidence                      8889999999999 54322      22222  23467999999999999999988999999998544 33


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      +.++        -...|.+.+.+|+. ..+++|+.|..++.||..++..+    ..+           ..+|.++|.++.
T Consensus       219 Ks~k--------~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi----~~~-----------nkgh~gpVhcVr  274 (334)
T KOG0278|consen  219 KSYK--------MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEI----GSY-----------NKGHFGPVHCVR  274 (334)
T ss_pred             eecc--------CccccccccccCCC-ceEEecCcceEEEEEeccCCcee----eec-----------ccCCCCceEEEE
Confidence            3221        24457889999999 99999999999999999999764    222           144568999999


Q ss_pred             EccCCCEEEEeC-CCeEEEEECCC
Q 015363          349 FARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       349 ~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      |+|||..-++|+ ||+|+||.+..
T Consensus       275 FSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  275 FSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             ECCCCceeeccCCCceEEEEEecC
Confidence            999999999997 79999999975

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.6e-25  Score=174.66  Aligned_cols=254  Identities=18%  Similarity=0.277  Sum_probs=189.1

Q ss_pred             CcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (408)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   92 (408)
                      ....|.+.+.|      ....|.++|+|++.  ++.++|+|+.|-+|+|||+.....                       
T Consensus        27 ~s~~~~l~~lF------~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-----------------------   75 (362)
T KOG0294|consen   27 DSVKPTLKPLF------AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-----------------------   75 (362)
T ss_pred             cccceeeeccc------cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-----------------------
Confidence            34456666654      34579999999998  589999999999999999876653                       


Q ss_pred             eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecC
Q 015363           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (408)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  172 (408)
                      +..+..|.            +.|+++.|.+....+.|++|+.||.|.+|+...-++...++.+..        .|.    
T Consensus        76 lg~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~--------~Vt----  131 (362)
T KOG0294|consen   76 LGILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG--------QVT----  131 (362)
T ss_pred             hcceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc--------ccc----
Confidence            34566777            779999997653334899999999999999998888877777643        233    


Q ss_pred             CceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEec
Q 015363          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD  252 (408)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  252 (408)
                         .++.+|.++..            ++.+.|+.+++|+++++ .......      -.  ...+.+.|+|.|.+|+.+.
T Consensus       132 ---~lsiHPS~KLA------------LsVg~D~~lr~WNLV~G-r~a~v~~------L~--~~at~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  132 ---DLSIHPSGKLA------------LSVGGDQVLRTWNLVRG-RVAFVLN------LK--NKATLVSWSPQGDHFVVSG  187 (362)
T ss_pred             ---eeEecCCCceE------------EEEcCCceeeeehhhcC-ccceeec------cC--CcceeeEEcCCCCEEEEEe
Confidence               68999999987            99999999999994433 2211110      11  2234489999999999886


Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363          253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  332 (408)
Q Consensus       253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  332 (408)
                      ...|-+|.++. ...+..       +. ....+.++.|-..  ..|++|..|+.|.+||.....    +...+.+|    
T Consensus       188 ~~~i~i~q~d~-A~v~~~-------i~-~~~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds~~----~~~~~~AH----  248 (362)
T KOG0294|consen  188 RNKIDIYQLDN-ASVFRE-------IE-NPKRILCATFLDG--SELLVGGDNEWISLKDTDSDT----PLTEFLAH----  248 (362)
T ss_pred             ccEEEEEeccc-HhHhhh-------hh-ccccceeeeecCC--ceEEEecCCceEEEeccCCCc----cceeeecc----
Confidence            67799999984 333322       11 1244667777654  589999999999999998753    23555566    


Q ss_pred             CccccccccceeEEEEEc--cCCCEEEEe-CCCeEEEEECCCC
Q 015363          333 TRSFFTEIIASISDIKFA--RNGRHILSR-DYMTLKLWDINMD  372 (408)
Q Consensus       333 ~~~~~~~h~~~i~~~~~s--pdg~~l~s~-~d~~v~~wd~~~~  372 (408)
                              ..+|.++.+-  |++.+|+++ +||.|++||++..
T Consensus       249 --------~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  249 --------ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             --------hhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence                    5789998853  568899998 5899999999873

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=6.7e-25  Score=183.39  Aligned_cols=293  Identities=11%  Similarity=0.116  Sum_probs=208.3

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeee-ccCCcccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~~~  110 (408)
                      ..|.-+|.|++++|++++.++++.+|+|.=|++.++...   +-.++.. ...  ...+.....- .+|.          
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~---~~i~~~~-ev~--k~~~~~~k~~r~~h~----------  202 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKD---RYIIERD-EVL--KSHGNPLKESRKGHV----------  202 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceeeeehhcCccc---ccccccc-hhh--hhccCCCCccccccc----------
Confidence            468999999999999999999999999999999887632   0000100 000  0001111111 2555          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|.+++.+  +||++||+|+.|..|.||+.++.+.++.+..+..        .|.       .++|-.....+    
T Consensus       203 --keil~~avS--~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~--------~V~-------~L~fr~gt~~l----  259 (479)
T KOG0299|consen  203 --KEILTLAVS--SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG--------AVS-------SLAFRKGTSEL----  259 (479)
T ss_pred             --ceeEEEEEc--CCCcEEEecCCCceEEEecCcccchhhccccccc--------cee-------eeeeecCccce----
Confidence              669999996  4599999999999999999999998888777643        344       56676666665    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              ++++.|+.|++|+ +.....      +.+ +.+|...|.+|....-++.+-+| .|+++++|++....+.+ 
T Consensus       260 --------ys~s~Drsvkvw~-~~~~s~------vet-lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli-  322 (479)
T KOG0299|consen  260 --------YSASADRSVKVWS-IDQLSY------VET-LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI-  322 (479)
T ss_pred             --------eeeecCCceEEEe-hhHhHH------HHH-HhCCccceeeechhcccceEEeccccceeEEEeccccceee-
Confidence                    9999999999999 543222      222 47999999999888888888788 99999999996444333 


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccc-cccCCCCccccccccceeEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE-EQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                              +.++.+.+-|++|-.+.  .|++|+.+|.|.+|++.+.+.+    .+.. .|... +..-.-.+..+|++++
T Consensus       323 --------frg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkpl----f~~~~AHgv~-~~~~~~~~~~Witsla  387 (479)
T KOG0299|consen  323 --------FRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKPL----FTSRLAHGVI-PELDPVNGNFWITSLA  387 (479)
T ss_pred             --------eeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCce----eEeecccccc-CCccccccccceeeeE
Confidence                    56788889999998774  8999999999999999887543    3222 12110 0000011225999999


Q ss_pred             EccCCCEEEEeC-CCeEEEEECCCCC---CceeeeeecccccceEEecCCCe
Q 015363          349 FARNGRHILSRD-YMTLKLWDINMDS---GPVATFQVHEHLRPKVMHSSKNY  396 (408)
Q Consensus       349 ~spdg~~l~s~~-d~~v~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  396 (408)
                      ..|...++++|+ +|.|++|.+..+-   +++..+. -.+..+.++...++.
T Consensus       388 ~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  388 VIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGK  438 (479)
T ss_pred             ecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCC
Confidence            999999999997 7999999998742   3344444 344566666555555

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=1.6e-24  Score=196.83  Aligned_cols=238  Identities=13%  Similarity=0.186  Sum_probs=164.9

Q ss_pred             cceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ...+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.+....   ..            .....+..+.+|.        
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~---~~------------~i~~p~~~L~gH~--------  125 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES---VK------------EIKDPQCILKGHK--------  125 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc---cc------------ccccceEEeecCC--------
Confidence            34579999999999997 789999999999999998754210   00            0011234567887        


Q ss_pred             cccccceeEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          109 LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                          ..|.+++|+|.  +. ++++++.|++|++||+++++....+..+         ..+.       ++.|+|+|..+ 
T Consensus       126 ----~~V~sVaf~P~--g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~---------~~V~-------SlswspdG~lL-  182 (568)
T PTZ00420        126 ----KKISIIDWNPM--NYYIMCSSGFDSFVNIWDIENEKRAFQINMP---------KKLS-------SLKWNIKGNLL-  182 (568)
T ss_pred             ----CcEEEEEECCC--CCeEEEEEeCCCeEEEEECCCCcEEEEEecC---------CcEE-------EEEECCCCCEE-
Confidence                77999999875  44 4578999999999999988765544321         1233       78999999987 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEE-----EEeCCCCCEEEEe-cC----CeEE
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS-----ISNNSDGETFISA-DD----LRIN  257 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----i~~~~~~~~l~~~-~d----~~i~  257 (408)
                                 ++++.|+.|++|| +...      .....+ .+|.+.+..     ..|++++.+++++ .|    ++|+
T Consensus       183 -----------at~s~D~~IrIwD-~Rsg------~~i~tl-~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk  243 (568)
T PTZ00420        183 -----------SGTCVGKHMHIID-PRKQ------EIASSF-HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK  243 (568)
T ss_pred             -----------EEEecCCEEEEEE-CCCC------cEEEEE-ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence                       8888999999999 5432      222333 567654432     3456888888875 44    4799


Q ss_pred             EEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccc
Q 015363          258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF  337 (408)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (408)
                      |||++....++..+.     +..+.+.+...-..+++ .++++|+.|+.|++|++..+...  .+..+.           
T Consensus       244 LWDlr~~~~pl~~~~-----ld~~~~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~~~~~~--~l~~~~-----------  304 (568)
T PTZ00420        244 LWDLKNTTSALVTMS-----IDNASAPLIPHYDESTG-LIYLIGKGDGNCRYYQHSLGSIR--KVNEYK-----------  304 (568)
T ss_pred             EEECCCCCCceEEEE-----ecCCccceEEeeeCCCC-CEEEEEECCCeEEEEEccCCcEE--eecccc-----------
Confidence            999996555554432     33334444333344556 89999999999999999876421  112221           


Q ss_pred             ccccceeEEEEEccCC
Q 015363          338 TEIIASISDIKFARNG  353 (408)
Q Consensus       338 ~~h~~~i~~~~~spdg  353 (408)
                        +..++.+++|.|..
T Consensus       305 --s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        305 --SCSPFRSFGFLPKQ  318 (568)
T ss_pred             --cCCCccceEEcccc
Confidence              23567889999953

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=2.9e-26  Score=188.94  Aligned_cols=276  Identities=14%  Similarity=0.253  Sum_probs=203.4

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|.+.|..+.|-++...|++|+.|..|++|+......                     .+..++.+..          
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------~~~~tLaGs~----------  219 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------ELISTLAGSL----------  219 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------------hhhhhhhccC----------
Confidence            446999999999999988899999999999999876642                     2345566665          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ++|+++.|  ++++..+++++.|+.+++|++...+...++.+|...        +.       ++.+......+    
T Consensus       220 --g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk--------Vt-------~ak~~~~~~~v----  276 (459)
T KOG0288|consen  220 --GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK--------VT-------AAKFKLSHSRV----  276 (459)
T ss_pred             --CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhhhcccccc--------ee-------eehhhccccce----
Confidence              77999999  566889999999999999999999888887776443        22       22333222223    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              ++++.|.+|++|| +..      ..|.+..+.+  ..+..|..+  ...+++| .|++|++||.+.......
T Consensus       277 --------Vsgs~DRtiK~WD-l~k------~~C~kt~l~~--S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s  337 (459)
T KOG0288|consen  277 --------VSGSADRTIKLWD-LQK------AYCSKTVLPG--SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS  337 (459)
T ss_pred             --------eeccccchhhhhh-hhh------hheecccccc--ccccceEec--ceeeeecccccceEEEeccCCceeeE
Confidence                    9999999999999 533      4455544322  345556555  5677888 899999999995544332


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                              .+. .+.|+++..++++ ..+.+++.|.++.+.|+++...+    ..+....      +..+  +..+.+.|
T Consensus       338 --------v~~-gg~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~----~~~sA~g------~k~a--sDwtrvvf  395 (459)
T KOG0288|consen  338 --------VPL-GGRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIR----QTFSAEG------FKCA--SDWTRVVF  395 (459)
T ss_pred             --------eec-CcceeeEeeccCC-eEEeeecCCCceeeeecccccEE----EEeeccc------cccc--cccceeEE
Confidence                    233 4489999999999 77788899999999999998664    3333321      1122  34889999


Q ss_pred             ccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc---cceEEecCCCeeeeeec
Q 015363          350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL---RPKVMHSSKNYFMGLDN  402 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~  402 (408)
                      ||++.|+++|+ ||.|+||++.+ +++.+.+......   ....+.+....+++.|+
T Consensus       396 Spd~~YvaAGS~dgsv~iW~v~t-gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  396 SPDGSYVAAGSADGSVYIWSVFT-GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK  451 (459)
T ss_pred             CCCCceeeeccCCCcEEEEEccC-ceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence            99999999996 89999999998 7888877665443   34444455555666654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.9e-24  Score=171.84  Aligned_cols=293  Identities=14%  Similarity=0.223  Sum_probs=198.3

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|.+-|+|+.|.+.|+.+|+|+.|++|+|||......                   ++.+-...+.|.          
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-------------------~W~~Ts~Wrah~----------   59 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-------------------TWSCTSSWRAHD----------   59 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-------------------ceEEeeeEEecC----------
Confidence            457899999999999999999999999999999754432                   455667788998          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-------cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  183 (408)
                        +.|..|.|.+.+-|+.+|+++.|+++.||.-...       +..........      .+.+.       .+.|.|..
T Consensus        60 --~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds------rssV~-------DV~FaP~h  124 (361)
T KOG2445|consen   60 --GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS------RSSVT-------DVKFAPKH  124 (361)
T ss_pred             --CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC------Cccee-------EEEecchh
Confidence              7799999987777999999999999999976321       12222211111      22333       78888864


Q ss_pred             CeeecccccccCccccCCCCCceeeeceeeeccccccccccceee------ccccccceEEEEeCCC---CCEEEEecC-
Q 015363          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY------AHAHDYHINSISNNSD---GETFISADD-  253 (408)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~i~~~~~---~~~l~~~~d-  253 (408)
                      .-+.          +++++.||.+++|+.....+.. .......+      ...+.....|+.|+|.   ..+||.|.| 
T Consensus       125 lGLk----------lA~~~aDG~lRIYEA~dp~nLs-~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e  193 (361)
T KOG2445|consen  125 LGLK----------LAAASADGILRIYEAPDPMNLS-QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDE  193 (361)
T ss_pred             cceE----------EEEeccCcEEEEEecCCccccc-cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEccc
Confidence            4331          3899999999999832222211 01111111      1245567789999986   378888843 


Q ss_pred             -----CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCC---ceEEEEeCCCeEEEEEcCCCceeccccccc
Q 015363          254 -----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---NMLAYSSSKGSIRLIDMRQSALCDTHSKLF  325 (408)
Q Consensus       254 -----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  325 (408)
                           +.+.||...........+    .++.+|..+|+.++|.|+-.   .+||+++.|| |+||.++........-...
T Consensus       194 ~a~~~~~~~Iye~~e~~rKw~kv----a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~  268 (361)
T KOG2445|consen  194 DAPHLNKVKIYEYNENGRKWLKV----AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVL  268 (361)
T ss_pred             CCccccceEEEEecCCcceeeee----hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhccc
Confidence                 389999887665333322    35789999999999999742   5799999999 9999998532100000000


Q ss_pred             ccccC----CCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCC--CCceeeeeecc
Q 015363          326 EEQEA----PGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMD--SGPVATFQVHE  383 (408)
Q Consensus       326 ~~~~~----~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~--~~~~~~~~~~~  383 (408)
                      .....    -.....+.+|.+.|..+.|.-.|..|++. +||+|++|...-.  -++...++...
T Consensus       269 ~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~  333 (361)
T KOG2445|consen  269 APDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEG  333 (361)
T ss_pred             CCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccC
Confidence            00000    00123367788999999999999999986 5699999987642  34445554433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.6e-26  Score=196.01  Aligned_cols=261  Identities=18%  Similarity=0.254  Sum_probs=198.3

Q ss_pred             ceeeccceE---EEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccc
Q 015363           31 EVQEVDIIS---AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (408)
Q Consensus        31 ~~~h~~~V~---~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  106 (408)
                      +.+|...|.   ++..+. .+++|+||++||.|++|+.......                 |.-.+...++.|.      
T Consensus        17 e~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~-----------------~s~~~~asme~Hs------   73 (735)
T KOG0308|consen   17 EKQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE-----------------PSTPYIASMEHHS------   73 (735)
T ss_pred             hhhccccccchhhccccCCCCceEEecCCCceEEEeccccccCC-----------------cccchhhhhhhhH------
Confidence            346777777   666665 5778999999999999998655321                 2233567788898      


Q ss_pred             cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc--EEEEeccCCCCcccCCCCCeEeecCCceeeEE-ccCC
Q 015363          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY-MANG  183 (408)
Q Consensus       107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~  183 (408)
                            +.|+++..+  .+++.|++++.|-+|++|+...+.  +..++..|.+        .|.       ++++ .++.
T Consensus        74 ------DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D--------YVk-------cla~~ak~~  130 (735)
T KOG0308|consen   74 ------DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD--------YVK-------CLAYIAKNN  130 (735)
T ss_pred             ------hHHhhHHhh--cCCCceEEecCCceEEEeecccCcchhHhhhhcccc--------hhe-------eeeecccCc
Confidence                  779999996  557789999999999999998763  3333333321        222       4555 3344


Q ss_pred             CeeecccccccCccccCCCCCceeeeceeeecccc--ccc--cccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEE
Q 015363          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET--NLV--AGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINL  258 (408)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~i  258 (408)
                      ..            +++|+-|+.|.+|| +.....  ...  ......+..++...|++++.++.|..+++| ..+.+++
T Consensus       131 ~l------------vaSgGLD~~IflWD-in~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~  197 (735)
T KOG0308|consen  131 EL------------VASGGLDRKIFLWD-INTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL  197 (735)
T ss_pred             ee------------EEecCCCccEEEEE-ccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence            44            49999999999999 653211  100  111112223788899999999999999998 8999999


Q ss_pred             EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc
Q 015363          259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT  338 (408)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (408)
                      ||.++..+.++        +.+|...|..+..++|| ..+++++.||+|++||+...+.+    .++..|.         
T Consensus       198 wDprt~~kimk--------LrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl----~T~~vH~---------  255 (735)
T KOG0308|consen  198 WDPRTCKKIMK--------LRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCL----ATYIVHK---------  255 (735)
T ss_pred             eccccccceee--------eeccccceEEEEEcCCC-CeEeecCCCceEEeeecccccee----eeEEecc---------
Confidence            99997776665        57999999999999999 99999999999999999987443    6677774         


Q ss_pred             cccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCc
Q 015363          339 EIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP  375 (408)
Q Consensus       339 ~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~  375 (408)
                         ..|+++.-+|+-..+++|+ |+.|..=|+++..+.
T Consensus       256 ---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~  290 (735)
T KOG0308|consen  256 ---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS  290 (735)
T ss_pred             ---CceEEEeeCCCcceEEecCCCCcEEecccCCchhh
Confidence               6799999999999999996 799999999985333

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=8.2e-26  Score=186.29  Aligned_cols=244  Identities=18%  Similarity=0.244  Sum_probs=182.6

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+-.++|+++.|.++++++++++.|+.+++|+++..+                       ...++.+|.         
T Consensus       214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-----------------------~~~TLsGHt---------  261 (459)
T KOG0288|consen  214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-----------------------LRHTLSGHT---------  261 (459)
T ss_pred             hhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh-----------------------hhhhhcccc---------
Confidence            344567889999999999999999999999999998655                       467899999         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         +.|+++.|...  ...+++|+.|.+|++||+....+....-.....         .       .+...  ...    
T Consensus       262 ---dkVt~ak~~~~--~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~c---------n-------DI~~~--~~~----  314 (459)
T KOG0288|consen  262 ---DKVTAAKFKLS--HSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQC---------N-------DIVCS--ISD----  314 (459)
T ss_pred             ---cceeeehhhcc--ccceeeccccchhhhhhhhhhheeccccccccc---------c-------ceEec--cee----
Confidence               78999999754  335999999999999999987766533221100         0       11111  222    


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                              ++++..|+.|++|| .+..      .+.... ..+ +.|+++..++++..+.++ .|.++.+.|+++ ....
T Consensus       315 --------~~SgH~DkkvRfwD-~Rs~------~~~~sv-~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt-~eI~  376 (459)
T KOG0288|consen  315 --------VISGHFDKKVRFWD-IRSA------DKTRSV-PLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRT-KEIR  376 (459)
T ss_pred             --------eeecccccceEEEe-ccCC------ceeeEe-ecC-cceeeEeeccCCeEEeeecCCCceeeeeccc-ccEE
Confidence                    38999999999999 5442      222222 333 489999999999988887 899999999994 4444


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      ..+...  .+.. ....+.+.|||++ .|+++|+.||.|+||++.+++..    +.+.....          ...|+++.
T Consensus       377 ~~~sA~--g~k~-asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE----~~l~~s~s----------~~aI~s~~  438 (459)
T KOG0288|consen  377 QTFSAE--GFKC-ASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLE----KVLSLSTS----------NAAITSLS  438 (459)
T ss_pred             EEeecc--cccc-ccccceeEECCCC-ceeeeccCCCcEEEEEccCceEE----EEeccCCC----------CcceEEEE
Confidence            443221  1221 1226889999999 99999999999999999999765    44443321          13699999


Q ss_pred             EccCCCEEEEeC-CCeEEEEE
Q 015363          349 FARNGRHILSRD-YMTLKLWD  368 (408)
Q Consensus       349 ~spdg~~l~s~~-d~~v~~wd  368 (408)
                      |+|.|..|++++ ++.+.+|.
T Consensus       439 W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  439 WNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EcCCCchhhcccCCcceEecC
Confidence            999999999997 59999993

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=3.7e-25  Score=187.44  Aligned_cols=263  Identities=16%  Similarity=0.166  Sum_probs=186.4

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      ....|++++|++.|..|++.+..-..+|+|.++.+..                       ...+|.....++..+..|-.
T Consensus       213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~-----------------------e~~KGDQYI~Dm~nTKGHia  269 (641)
T KOG0772|consen  213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV-----------------------EFSKGDQYIRDMYNTKGHIA  269 (641)
T ss_pred             cccccceeeecCCCCeEEEEecCcceeEEccCCceee-----------------------eeeccchhhhhhhccCCcee
Confidence            4668999999999998888888889999998876531                       12233333333333333448


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      .++|.+|+|... ..|++++.||++++|++...+ ..++++.....     ...|     .+..++|+++|+.+      
T Consensus       270 ~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~-----g~Rv-----~~tsC~~nrdg~~i------  332 (641)
T KOG0772|consen  270 ELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG-----GKRV-----PVTSCAWNRDGKLI------  332 (641)
T ss_pred             eeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeeccCC-----Cccc-----CceeeecCCCcchh------
Confidence            899999998644 579999999999999998654 23343332211     1111     12368999999998      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeecccccc--ceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY--HINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                            ++|..||.|.+|+ ....    ...+...+..+|..  .|++|+|+++|++|++- .|+++++||++..++++.
T Consensus       333 ------Aagc~DGSIQ~W~-~~~~----~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~  401 (641)
T KOG0772|consen  333 ------AAGCLDGSIQIWD-KGSR----TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN  401 (641)
T ss_pred             ------hhcccCCceeeee-cCCc----ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence                  9999999999999 4221    12222222367766  89999999999999997 999999999998887765


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC------CCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                      ...    .+.. .-.-+.++|+|+. +++++|+.      .|.+.+||..+...+    +.+.-.            ...
T Consensus       402 ~~t----gL~t-~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~v----~ki~i~------------~aS  459 (641)
T KOG0772|consen  402 VRT----GLPT-PFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDTV----YKIDIS------------TAS  459 (641)
T ss_pred             hhc----CCCc-cCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceeeE----EEecCC------------Cce
Confidence            421    1111 2234679999999 99999864      478999999887654    222222            257


Q ss_pred             eEEEEEccCCCEEEEe-CCCeEEEEEC
Q 015363          344 ISDIKFARNGRHILSR-DYMTLKLWDI  369 (408)
Q Consensus       344 i~~~~~spdg~~l~s~-~d~~v~~wd~  369 (408)
                      |..+.|+|.-+.|.+| +||.++++=-
T Consensus       460 vv~~~WhpkLNQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  460 VVRCLWHPKLNQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             EEEEeecchhhheeeecCCCceEEEEC
Confidence            8999999987766666 6888888743

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.9e-25  Score=176.62  Aligned_cols=267  Identities=16%  Similarity=0.234  Sum_probs=197.7

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      +..+|.+.|+.++.......+.+++.|.+.+||.++++.+                       +..+.||.         
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-----------------------L~~Y~GH~---------  190 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-----------------------LATYTGHT---------  190 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeeccccc-----------------------eeeecccc---------
Confidence            5678999999999988778999999999999999998864                       67899999         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC----c----------EEEEe-ccCCCC--cccCCCCC-eEee-
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK----K----------VKKVF-DWNVHP--EKAAGNGP-IFGS-  170 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~----~----------~~~~~-~~~~~~--~~~~~~~~-v~~~-  170 (408)
                         +.|++|+|+++  +.++++++.|++..||...-.    +          ..... ..+...  .....++. +... 
T Consensus       191 ---GSVNsikfh~s--~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl  265 (481)
T KOG0300|consen  191 ---GSVNSIKFHNS--GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPL  265 (481)
T ss_pred             ---cceeeEEeccc--cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeee
Confidence               77999999876  779999999999999973210    0          00000 000000  00000000 0000 


Q ss_pred             ------cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC
Q 015363          171 ------HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD  244 (408)
Q Consensus       171 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  244 (408)
                            .....+..|...|+.+            ++++.|.+..+|| +..      +..+.. +.+|+...+.++-+|.
T Consensus       266 ~~ltgH~~vV~a~dWL~gg~Q~------------vTaSWDRTAnlwD-VEt------ge~v~~-LtGHd~ELtHcstHpt  325 (481)
T KOG0300|consen  266 MRLTGHRAVVSACDWLAGGQQM------------VTASWDRTANLWD-VET------GEVVNI-LTGHDSELTHCSTHPT  325 (481)
T ss_pred             eeeeccccceEehhhhcCccee------------eeeeccccceeee-ecc------Cceecc-ccCcchhccccccCCc
Confidence                  0111234566666665            8999999999999 533      444444 4899999999999999


Q ss_pred             CCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccc
Q 015363          245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK  323 (408)
Q Consensus       245 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  323 (408)
                      .++++++ .|.+.++||++..-+...+       +.+|...|+++.|..+.  .+++|+.|.+|++||+++..   .++.
T Consensus       326 QrLVvTsSrDtTFRLWDFReaI~sV~V-------FQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMR---splA  393 (481)
T KOG0300|consen  326 QRLVVTSSRDTTFRLWDFREAIQSVAV-------FQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMR---SPLA  393 (481)
T ss_pred             ceEEEEeccCceeEeccchhhcceeee-------ecccccceeEEEEecCC--ceeecCCCceEEEeeecccc---Ccce
Confidence            9999998 8999999999944444443       89999999999999885  68999999999999999875   3445


Q ss_pred             ccccccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCCCCCceeeee
Q 015363          324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       324 ~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~~~~~~~~~~  380 (408)
                      ++...             ++++.++.+..+..|+.-.| ..|++||++  |..+..++
T Consensus       394 TIRtd-------------S~~NRvavs~g~~iIAiPhDNRqvRlfDln--G~RlaRlP  436 (481)
T KOG0300|consen  394 TIRTD-------------SPANRVAVSKGHPIIAIPHDNRQVRLFDLN--GNRLARLP  436 (481)
T ss_pred             eeecC-------------CccceeEeecCCceEEeccCCceEEEEecC--CCccccCC
Confidence            55544             67999999987778888765 999999996  45555554

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.3e-23  Score=157.98  Aligned_cols=266  Identities=20%  Similarity=0.316  Sum_probs=179.6

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      +.....|.+++|+|.|.+.|+|+...+++|.....-...   +     .....+..|.......-+.|.           
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~---r-----~~hea~~~pp~v~~kr~khhk-----------   89 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL---R-----HAHEAAKQPPSVLCKRNKHHK-----------   89 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCc---c-----cccccccCCCeEEeeeccccC-----------
Confidence            345678999999999999999999999999875432210   0     011111112111222234444           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE---eccCCCCcccCCCCCeEeecCCceeeEEccC---CCe
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV---FDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN---GGC  185 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~  185 (408)
                       +.|.|.+|+|.  |+++++|+.|.+|++...+...+..+   ++++.      .+|.+.       .++|..+   +..
T Consensus        90 -gsiyc~~ws~~--geliatgsndk~ik~l~fn~dt~~~~g~dle~nm------hdgtir-------dl~fld~~~s~~~  153 (350)
T KOG0641|consen   90 -GSIYCTAWSPC--GELIATGSNDKTIKVLPFNADTCNATGHDLEFNM------HDGTIR-------DLAFLDDPESGGA  153 (350)
T ss_pred             -ccEEEEEecCc--cCeEEecCCCceEEEEecccccccccCcceeeee------cCCcee-------eeEEecCCCcCce
Confidence             78999999765  99999999999999988775443221   11111      133343       4555433   222


Q ss_pred             eecccccccCccccC-CCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC
Q 015363          186 GERNFGCASNDSSFP-PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI  263 (408)
Q Consensus       186 l~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~  263 (408)
                      +           +++ |..|-.|.+=| ..      .++..+.+ .+|.+.|.++ ++-++-.+++| .|.+|++||++ 
T Consensus       154 i-----------l~s~gagdc~iy~td-c~------~g~~~~a~-sghtghilal-yswn~~m~~sgsqdktirfwdlr-  212 (350)
T KOG0641|consen  154 I-----------LASAGAGDCKIYITD-CG------RGQGFHAL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLR-  212 (350)
T ss_pred             E-----------EEecCCCcceEEEee-cC------CCCcceee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeee-
Confidence            2           233 34455555544 22      23444444 8899988876 34467899999 89999999999 


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                      -..+.++++..-..-.-....|..++..|.| ++|++|-.|....+||++.+..+    +.+..|            +..
T Consensus       213 v~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~i----q~f~ph------------sad  275 (350)
T KOG0641|consen  213 VNSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMI----QRFHPH------------SAD  275 (350)
T ss_pred             ccceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCcee----eeeCCC------------ccc
Confidence            4555555432110000123668999999999 99999999999999999998554    555555            688


Q ss_pred             eEEEEEccCCCEEEEeC-CCeEEEEECC
Q 015363          344 ISDIKFARNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       344 i~~~~~spdg~~l~s~~-d~~v~~wd~~  370 (408)
                      |.++.|||...||++++ |..|++-|+.
T Consensus       276 ir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  276 IRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             eeEEEeCCCceEEEEecccceEEEeecc
Confidence            99999999999999998 6999999996

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5e-24  Score=186.03  Aligned_cols=260  Identities=14%  Similarity=0.227  Sum_probs=198.0

Q ss_pred             EEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEE
Q 015363           39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI  118 (408)
Q Consensus        39 ~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v  118 (408)
                      +-++|+ ..+.||+|.. ..|.+|+..++...                       ....-++            ..|+++
T Consensus       181 nlldWs-s~n~laValg-~~vylW~~~s~~v~-----------------------~l~~~~~------------~~vtSv  223 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVT-----------------------ELCSFGE------------ELVTSV  223 (484)
T ss_pred             hHhhcc-cCCeEEEEec-ceEEEEecCCCceE-----------------------EeEecCC------------CceEEE
Confidence            346777 4456777754 48999998877531                       1112223            669999


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363          119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (408)
Q Consensus       119 ~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (408)
                      .|+++  |.+|++|..+|.|.|||..+.+....+....       .+.+-       +++|.  +..+            
T Consensus       224 ~ws~~--G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h-------~~rvg-------~laW~--~~~l------------  273 (484)
T KOG0305|consen  224 KWSPD--GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH-------ASRVG-------SLAWN--SSVL------------  273 (484)
T ss_pred             EECCC--CCEEEEeecCCeEEEEehhhccccccccCCc-------CceeE-------EEecc--CceE------------
Confidence            99755  8999999999999999999887766665521       12233       56777  4443            


Q ss_pred             cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCc
Q 015363          199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN  277 (408)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  277 (408)
                      .+|+.++.|..+| ++..+....     . +.+|...|..++|++|+.+||+| .|+.+.|||.......+.        
T Consensus       274 ssGsr~~~I~~~d-vR~~~~~~~-----~-~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~--------  338 (484)
T KOG0305|consen  274 SSGSRDGKILNHD-VRISQHVVS-----T-LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT--------  338 (484)
T ss_pred             EEecCCCcEEEEE-Eecchhhhh-----h-hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE--------
Confidence            8899999999999 554332222     1 47899999999999999999999 999999999964444443        


Q ss_pred             ccCCcCCeEEEEEcCCCCceEEEEeC--CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCE
Q 015363          278 MEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH  355 (408)
Q Consensus       278 ~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~  355 (408)
                      +..|...|..++|+|-...+||+|+.  |+.|++||..++..+    ......             +.|..|.|++..+-
T Consensus       339 ~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdtg-------------sQVcsL~Wsk~~kE  401 (484)
T KOG0305|consen  339 FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDTG-------------SQVCSLIWSKKYKE  401 (484)
T ss_pred             EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe----cccccC-------------CceeeEEEcCCCCE
Confidence            67899999999999988789999865  999999999999765    333322             57999999999877


Q ss_pred             EEEe---CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeee
Q 015363          356 ILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM  398 (408)
Q Consensus       356 l~s~---~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (408)
                      |+++   +++.|.||+..+ .+++..+.+|...+-.+...-+++.+
T Consensus       402 i~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i  446 (484)
T KOG0305|consen  402 LLSTHGYSENQITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETI  446 (484)
T ss_pred             EEEecCCCCCcEEEEeccc-cceeeeecCCcceeEEEEECCCCCEE
Confidence            7775   358999999998 79999999999986666655555543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.3e-25  Score=195.06  Aligned_cols=286  Identities=15%  Similarity=0.238  Sum_probs=205.0

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ....++|+.+++-..|+.+++. .++||.+........                   +...+.....         .--.
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~-------------------~~~~~k~kqn---------~~~S   89 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEK-------------------CNHRFKTKQN---------KFYS   89 (839)
T ss_pred             ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcc-------------------eeeecccccc---------eeee
Confidence            4557788889998888888876 889998765542100                   1111111110         0033


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCC---CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQE---KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      +.+|.|. +-..++||+++..|.|.+||+..   .+....+..|..        .+.       .+.|++....+     
T Consensus        90 ~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~R--------s~~-------~ldfh~tep~i-----  148 (839)
T KOG0269|consen   90 AADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHER--------SAN-------KLDFHSTEPNI-----  148 (839)
T ss_pred             hhhcccc-cchhhhheeecCCCcEEEEecCccccchhhhHhhhhcc--------cee-------eeeeccCCccE-----
Confidence            6778997 44567999999999999999986   333333333321        122       57788776554     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                            +++|+.||.|++|| ++..+....       ..+....|+.|+|+|. +.+|+++ +.|.+++||++...++..
T Consensus       149 ------liSGSQDg~vK~~D-lR~~~S~~t-------~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~  214 (839)
T KOG0269|consen  149 ------LISGSQDGTVKCWD-LRSKKSKST-------FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK  214 (839)
T ss_pred             ------EEecCCCceEEEEe-eeccccccc-------ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH
Confidence                  69999999999999 655443222       2445678999999986 5788888 899999999998777654


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      .       +..|.++|.++.|+|++ .+||+|+.|+.|+|||+.+...  .+..++..             ..+|.+++|
T Consensus       215 k-------~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~--~~~~tInT-------------iapv~rVkW  271 (839)
T KOG0269|consen  215 K-------LTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRA--KPKHTINT-------------IAPVGRVKW  271 (839)
T ss_pred             H-------hhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCc--cceeEEee-------------cceeeeeee
Confidence            3       78999999999999988 9999999999999999986543  11222222             268999999


Q ss_pred             ccCCC-EEEEe---CCCeEEEEECCCCCCceeeeeecccccceEEecC--CCeeeeeeceeeec
Q 015363          350 ARNGR-HILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSS--KNYFMGLDNIHTLY  407 (408)
Q Consensus       350 spdg~-~l~s~---~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~  407 (408)
                      -|+.. .|+++   .|-.|+|||++-+.-+..++..|......++-..  ...++.+.+..+++
T Consensus       272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            99765 56665   3589999999988899999999999877776555  33345555444443

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=2.5e-23  Score=189.06  Aligned_cols=226  Identities=10%  Similarity=0.066  Sum_probs=155.3

Q ss_pred             eecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEE
Q 015363           53 GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS  132 (408)
Q Consensus        53 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~  132 (408)
                      |+.++.|+||+.....                       .+..+.+|.            +.|.+++|+|. ++.+|++|
T Consensus        50 GG~~gvI~L~~~~r~~-----------------------~v~~L~gH~------------~~V~~lafsP~-~~~lLASg   93 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP-----------------------PVIKLKGHT------------SSILDLQFNPC-FSEILASG   93 (568)
T ss_pred             CCceeEEEeeecCCCc-----------------------eEEEEcCCC------------CCEEEEEEcCC-CCCEEEEE
Confidence            5567788888865432                       345688898            77999999864 24699999


Q ss_pred             eCCCeEEEEEcCCCcE--------EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCC
Q 015363          133 TNDKTIKLWKVQEKKV--------KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV  204 (408)
Q Consensus       133 ~~d~~i~vwd~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  204 (408)
                      +.|++|++||+.++..        ...+..+        ...|.       .+.|+|++..+           +++++.|
T Consensus        94 S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH--------~~~V~-------sVaf~P~g~~i-----------LaSgS~D  147 (568)
T PTZ00420         94 SEDLTIRVWEIPHNDESVKEIKDPQCILKGH--------KKKIS-------IIDWNPMNYYI-----------MCSSGFD  147 (568)
T ss_pred             eCCCeEEEEECCCCCccccccccceEEeecC--------CCcEE-------EEEECCCCCeE-----------EEEEeCC
Confidence            9999999999986421        1111111        22343       78999998764           3688999


Q ss_pred             ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcC
Q 015363          205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE  283 (408)
Q Consensus       205 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  283 (408)
                      +.|++|| +....      ....+  .|...|.+++|+|+|.+|+++ .|+.|++||+++.. ....       +.+|.+
T Consensus       148 gtIrIWD-l~tg~------~~~~i--~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-~i~t-------l~gH~g  210 (568)
T PTZ00420        148 SFVNIWD-IENEK------RAFQI--NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-IASS-------FHIHDG  210 (568)
T ss_pred             CeEEEEE-CCCCc------EEEEE--ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-EEEE-------EecccC
Confidence            9999999 54322      11222  245679999999999999988 89999999999543 3332       456766


Q ss_pred             CeEE-----EEEcCCCCceEEEEeCCC----eEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363          284 VITS-----AEFHPTHCNMLAYSSSKG----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       284 ~v~~-----~~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                      .+..     ..|++++ .+|++++.|+    +|+|||++....   ++..+..+.          +.+.+......++|.
T Consensus       211 ~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~---pl~~~~ld~----------~~~~L~p~~D~~tg~  276 (568)
T PTZ00420        211 GKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTS---ALVTMSIDN----------ASAPLIPHYDESTGL  276 (568)
T ss_pred             CceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCC---ceEEEEecC----------CccceEEeeeCCCCC
Confidence            5432     3456888 7788877664    799999996432   223332221          123333333455688


Q ss_pred             EEEEe-CCCeEEEEECCC
Q 015363          355 HILSR-DYMTLKLWDINM  371 (408)
Q Consensus       355 ~l~s~-~d~~v~~wd~~~  371 (408)
                      ++++| +|+.|++|++..
T Consensus       277 l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        277 IYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             EEEEEECCCeEEEEEccC
Confidence            88888 589999999976

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.5e-23  Score=166.93  Aligned_cols=279  Identities=13%  Similarity=0.163  Sum_probs=201.6

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      ..+.|++|.|+|.+..|+.++.||.+++|+.......                        ..-.|.            .
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~------------------------~~~~~~------------~   55 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK------------------------LKFKHG------------A   55 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh------------------------hheecC------------C
Confidence            3678999999999998999999999999998766431                        112233            7


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      ++.+.+|.+   ...+++|+.||.|+++|+.++....+....         ..+.       ++...+...++       
T Consensus        56 plL~c~F~d---~~~~~~G~~dg~vr~~Dln~~~~~~igth~---------~~i~-------ci~~~~~~~~v-------  109 (323)
T KOG1036|consen   56 PLLDCAFAD---ESTIVTGGLDGQVRRYDLNTGNEDQIGTHD---------EGIR-------CIEYSYEVGCV-------  109 (323)
T ss_pred             ceeeeeccC---CceEEEeccCceEEEEEecCCcceeeccCC---------CceE-------EEEeeccCCeE-------
Confidence            799999953   458999999999999999998766554442         2233       67777777776       


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                           ++|+.|+.|++|| .+...      +...  ......|.++..  .++.|++| .+..|.+||+++....++.. 
T Consensus       110 -----IsgsWD~~ik~wD-~R~~~------~~~~--~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~r-  172 (323)
T KOG1036|consen  110 -----ISGSWDKTIKFWD-PRNKV------VVGT--FDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRR-  172 (323)
T ss_pred             -----EEcccCccEEEEe-ccccc------cccc--cccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhc-
Confidence                 9999999999999 44311      1111  122346777765  46778887 99999999999766655321 


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  352 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd  352 (408)
                           -...+-.++++++-|++ .-+++++-||+|.+=.+.........-..|+.|.... .  =....-+|++++|+|-
T Consensus       173 -----eS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~-~--~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  173 -----ESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE-K--DTEIIYPVNAIAFHPI  243 (323)
T ss_pred             -----cccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeeccc-C--CceEEEEeceeEeccc
Confidence                 23345668999999987 6788889999999866655422222225666664211 0  0111247999999999


Q ss_pred             CCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeee
Q 015363          353 GRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLD  401 (408)
Q Consensus       353 g~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  401 (408)
                      -..|||| +||.|.+||+.+ .+.++.+...+.....+..-.++.++++-
T Consensus       244 ~~tfaTgGsDG~V~~Wd~~~-rKrl~q~~~~~~SI~slsfs~dG~~LAia  292 (323)
T KOG1036|consen  244 HGTFATGGSDGIVNIWDLFN-RKRLKQLAKYETSISSLSFSMDGSLLAIA  292 (323)
T ss_pred             cceEEecCCCceEEEccCcc-hhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence            8899998 689999999997 78888887776667777777778787763

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=1.1e-24  Score=173.56  Aligned_cols=223  Identities=17%  Similarity=0.258  Sum_probs=165.0

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc----EEEEeccCCCCcccCCCCCeE----eecCCceeeEEccCCC
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIF----GSHVSAIPKSYMANGG  184 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~  184 (408)
                      +++.+.+|+|  ||.++|+|+.|..|+|.|++.--    .........  .+   .-++.    --.+....+.|+|...
T Consensus       113 ~~cR~aafs~--DG~lvATGsaD~SIKildvermlaks~~~em~~~~~--qa---~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  113 SPCRAAAFSP--DGSLVATGSADASIKILDVERMLAKSKPKEMISGDT--QA---RHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             cceeeeeeCC--CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc--cc---CCceEeehhhccCcccceeecchhh
Confidence            8899999965  59999999999999999997321    111111100  00   00111    1113334788888888


Q ss_pred             eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC
Q 015363          185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI  263 (408)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~  263 (408)
                      .|            ++++.|++|+++| +.....   .+..+.+  ....+|+++.|+|.|.+|+.| +-..+++||+++
T Consensus       186 IL------------iS~srD~tvKlFD-fsK~sa---KrA~K~~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T  247 (430)
T KOG0640|consen  186 IL------------ISGSRDNTVKLFD-FSKTSA---KRAFKVF--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT  247 (430)
T ss_pred             eE------------EeccCCCeEEEEe-cccHHH---HHHHHHh--hccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence            77            9999999999999 544222   1222222  233679999999999999999 889999999994


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccc-cccCCCCccccccccc
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE-EQEAPGTRSFFTEIIA  342 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~  342 (408)
                       -+++...    ..-..|.+.|+++.+++.+ ++.++++.||.|+|||--+++.+    .++. .|.           .+
T Consensus       248 -~Qcfvsa----nPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv----~t~~~AH~-----------gs  306 (430)
T KOG0640|consen  248 -YQCFVSA----NPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCV----RTIGNAHG-----------GS  306 (430)
T ss_pred             -eeEeeec----CcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHH----HHHHhhcC-----------Cc
Confidence             4444321    1246789999999999999 99999999999999998877543    4443 232           36


Q ss_pred             eeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363          343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       343 ~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      .|.+..|..+|+||++++ |..|++|.+.+ +++++.+.|-
T Consensus       307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t-~R~l~~YtGA  346 (430)
T KOG0640|consen  307 EVCSAVFTKNGKYILSSGKDSTVKLWEIST-GRMLKEYTGA  346 (430)
T ss_pred             eeeeEEEccCCeEEeecCCcceeeeeeecC-CceEEEEecC
Confidence            899999999999999875 89999999998 8999999875

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=5.7e-25  Score=169.87  Aligned_cols=276  Identities=14%  Similarity=0.212  Sum_probs=218.1

Q ss_pred             ceeeccceEEEEECC---CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           31 EVQEVDIISAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~---~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      -.+|+.+|-.++|||   +|-+|++++.||.-.+-+-+++.                       .+-+|.+|.       
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd-----------------------wigtfeghk-------   59 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD-----------------------WIGTFEGHK-------   59 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-----------------------cEEeeeccC-------
Confidence            357999999999996   79999999999999888877766                       467899999       


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                           +.|.+...  +.|..+-|+++.|-+-++||.-++..+..+....         .|.       .++|+.|.+.| 
T Consensus        60 -----gavw~~~l--~~na~~aasaaadftakvw~a~tgdelhsf~hkh---------ivk-------~~af~~ds~~l-  115 (334)
T KOG0278|consen   60 -----GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELHSFEHKH---------IVK-------AVAFSQDSNYL-  115 (334)
T ss_pred             -----cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhhhhhhhh---------eee-------eEEecccchhh-
Confidence                 77888888  4556677888999999999999988776655432         122       68999999988 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                                 ++|+.+..+++|| +.+.+.     +... ..+|.+.|+.+-|....+.++++ +|++|++||.+++. 
T Consensus       116 -----------ltgg~ekllrvfd-ln~p~A-----pp~E-~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-  176 (334)
T KOG0278|consen  116 -----------LTGGQEKLLRVFD-LNRPKA-----PPKE-ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-  176 (334)
T ss_pred             -----------hccchHHHhhhhh-ccCCCC-----Cchh-hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-
Confidence                       9999999999999 554332     1222 37999999999999988888887 99999999999554 


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      ..+.+.        ....|+++.++++| ++|.+ ...+.|++||..+...+    +.++.+             ..|.+
T Consensus       177 ~v~sL~--------~~s~VtSlEvs~dG-~ilTi-a~gssV~Fwdaksf~~l----Ks~k~P-------------~nV~S  229 (334)
T KOG0278|consen  177 EVQSLE--------FNSPVTSLEVSQDG-RILTI-AYGSSVKFWDAKSFGLL----KSYKMP-------------CNVES  229 (334)
T ss_pred             EEEEEe--------cCCCCcceeeccCC-CEEEE-ecCceeEEeccccccce----eeccCc-------------ccccc
Confidence            444322        25668999999999 65544 56788999999988655    666655             57999


Q ss_pred             EEEccCCCEEEEeC-CCeEEEEECCCCCCceeee-eecccccceEEecCCCeeeee---eceeeec
Q 015363          347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATF-QVHEHLRPKVMHSSKNYFMGL---DNIHTLY  407 (408)
Q Consensus       347 ~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---d~~~~~~  407 (408)
                      ...+|+...+++|+ |..++-||..+ +..+-.+ ++|.+..-++...-++++.++   |--.+||
T Consensus       230 ASL~P~k~~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW  294 (334)
T KOG0278|consen  230 ASLHPKKEFFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW  294 (334)
T ss_pred             ccccCCCceEEecCcceEEEEEeccC-CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence            99999988888885 79999999998 6777776 899888888877666666554   4445554

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=4.4e-24  Score=178.56  Aligned_cols=248  Identities=17%  Similarity=0.270  Sum_probs=183.9

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .|...|.+++.|+||+|||+|+.|..|.||+..+.+.                       +..+.+|.            
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~eh-----------------------v~~~~ghr------------  244 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEH-----------------------VKVFKGHR------------  244 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccch-----------------------hhcccccc------------
Confidence            7999999999999999999999999999999988764                       45689998            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      +.|.+++|-..  -..+++++.|++|++|+++....+.++..|...        |.       .+.-..-++++      
T Consensus       245 ~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~--------v~-------~IdaL~reR~v------  301 (479)
T KOG0299|consen  245 GAVSSLAFRKG--TSELYSASADRSVKVWSIDQLSYVETLYGHQDG--------VL-------GIDALSRERCV------  301 (479)
T ss_pred             cceeeeeeecC--ccceeeeecCCceEEEehhHhHHHHHHhCCccc--------ee-------eechhcccceE------
Confidence            77999999543  457999999999999999987766666665432        22       34444455654      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                            -+|+.|+++++|+ +..        ..+.+..++.+.+-|++|-.+ ..|++| ++|.|.+|++...+ ++.+.
T Consensus       302 ------tVGgrDrT~rlwK-i~e--------esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk-plf~~  364 (479)
T KOG0299|consen  302 ------TVGGRDRTVRLWK-IPE--------ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK-PLFTS  364 (479)
T ss_pred             ------EeccccceeEEEe-ccc--------cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC-ceeEe
Confidence                  6678999999999 411        112224677788999998754 467777 99999999998444 43332


Q ss_pred             ecCCCcc-----cCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          272 DVKPANM-----EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       272 ~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      .+-....     ..+..+|++++..|.. .++|+|+.+|.|++|-+..+.....++..+.-.             +.|++
T Consensus       365 ~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~-------------GfVNs  430 (479)
T KOG0299|consen  365 RLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV-------------GFVNS  430 (479)
T ss_pred             eccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeecccc-------------cEEEE
Confidence            2111111     1223489999999998 999999999999999999885433334444433             78999


Q ss_pred             EEEccCCCEEEEe-C-CCeEEEEEC
Q 015363          347 IKFARNGRHILSR-D-YMTLKLWDI  369 (408)
Q Consensus       347 ~~~spdg~~l~s~-~-d~~v~~wd~  369 (408)
                      ++|+++|++|++| + ...+-=|-.
T Consensus       431 l~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  431 LAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             EEEccCCCEEEEecccccccceeeE
Confidence            9999999988887 3 444444433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.6e-23  Score=162.92  Aligned_cols=245  Identities=13%  Similarity=0.164  Sum_probs=182.1

Q ss_pred             cccceeeecccCcCcccceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363           14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (408)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   92 (408)
                      ...|..... .........+|.+.|-.++|+|. ..+|++++.|.+|++||...+++.                      
T Consensus        44 v~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~----------------------  100 (313)
T KOG1407|consen   44 VSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT----------------------  100 (313)
T ss_pred             eEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE----------------------
Confidence            344555543 12223345689999999999985 679999999999999999877642                      


Q ss_pred             eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecC
Q 015363           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (408)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  172 (408)
                       ......             ..-.-+.|+|+  |++++++..|..|.+.|.++.+.....+.....         .    
T Consensus       101 -~~i~~~-------------~eni~i~wsp~--g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~---------n----  151 (313)
T KOG1407|consen  101 -ARIETK-------------GENINITWSPD--GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEV---------N----  151 (313)
T ss_pred             -EEeecc-------------CcceEEEEcCC--CCEEEEecCcccEEEEEecccceeehhccccee---------e----
Confidence             111111             11345788655  889999999999999999988766554443211         1    


Q ss_pred             CceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-
Q 015363          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  251 (408)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-  251 (408)
                         .++|+.++...            |.....|.|.+.. .      +.-+++..+ .+|.....||.|+|+|++||+| 
T Consensus       152 ---e~~w~~~nd~F------------flt~GlG~v~ILs-y------psLkpv~si-~AH~snCicI~f~p~GryfA~Gs  208 (313)
T KOG1407|consen  152 ---EISWNNSNDLF------------FLTNGLGCVEILS-Y------PSLKPVQSI-KAHPSNCICIEFDPDGRYFATGS  208 (313)
T ss_pred             ---eeeecCCCCEE------------EEecCCceEEEEe-c------ccccccccc-ccCCcceEEEEECCCCceEeecc
Confidence               35666555554            6677778888754 1      223444454 8999999999999999999999 


Q ss_pred             cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363          252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  331 (408)
Q Consensus       252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  331 (408)
                      .|..+.+||++ .--+.+.       +..+.-+|+.++|+-+| ++||+|+.|..|-|=++.+|..+    ..++..   
T Consensus       209 ADAlvSLWD~~-ELiC~R~-------isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd~~----~eI~~~---  272 (313)
T KOG1407|consen  209 ADALVSLWDVD-ELICERC-------ISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGDRV----WEIPCE---  272 (313)
T ss_pred             ccceeeccChh-Hhhhhee-------eccccCceEEEEeccCc-ceeeccCccceEEeEecccCCeE----EEeecc---
Confidence            99999999998 3334443       56678899999999999 99999999999999999999765    333322   


Q ss_pred             CCccccccccceeEEEEEccCCCEEEEe
Q 015363          332 GTRSFFTEIIASISDIKFARNGRHILSR  359 (408)
Q Consensus       332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~  359 (408)
                                ++...++|+|...+||-+
T Consensus       273 ----------~~t~tVAWHPk~~LLAyA  290 (313)
T KOG1407|consen  273 ----------GPTFTVAWHPKRPLLAYA  290 (313)
T ss_pred             ----------CCceeEEecCCCceeeEE
Confidence                      678899999999888854

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=4.3e-24  Score=174.31  Aligned_cols=228  Identities=17%  Similarity=0.265  Sum_probs=168.7

Q ss_pred             ceeeccceEEEEECCCC--CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           31 EVQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~--~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      .+.|.+.|+.+.-++-+  .+.|+-+..|.|.||++....      +.+...+..+.. -..+.+.++.+|.++      
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l------~~l~~~~~~~~~-s~~~Pl~t~~ghk~E------  213 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL------NALSEPGLEVKD-SEFRPLFTFNGHKGE------  213 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhh------hhhcCccccccc-cccCceEEecccCcc------
Confidence            46789999999888764  467777889999999986432      222222221211 345566778888844      


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                            =..++|||...| .|++|..-+.|++|...++....-                               ..    
T Consensus       214 ------Gy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd-------------------------------~~----  251 (440)
T KOG0302|consen  214 ------GYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVD-------------------------------QR----  251 (440)
T ss_pred             ------ceeeeccccccc-ccccCccccceEeeeeccCceeec-------------------------------Cc----
Confidence                  788999997666 688998889999999887654320                               00    


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCc
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                                                            . +.+|...|-.++|+|.. ..|++| -|++|+|||++...+
T Consensus       252 --------------------------------------P-f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~  292 (440)
T KOG0302|consen  252 --------------------------------------P-FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK  292 (440)
T ss_pred             --------------------------------------c-ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence                                                  0 25688889999999986 567777 899999999996544


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      ...+.      ...|.+.|+.|+|+..- .+||+|+.||+++|||+|+.+.- .|+..|+-|            ..+|++
T Consensus       293 ~~~~~------~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~H------------k~pIts  352 (440)
T KOG0302|consen  293 KAAVS------TKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG-QPVATFKYH------------KAPITS  352 (440)
T ss_pred             cceeE------eeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC-CcceeEEec------------cCCeeE
Confidence            33221      46789999999999998 69999999999999999987542 444455544            689999


Q ss_pred             EEEccC--CCEEEEeCCCeEEEEECCCC
Q 015363          347 IKFARN--GRHILSRDYMTLKLWDINMD  372 (408)
Q Consensus       347 ~~~spd--g~~l~s~~d~~v~~wd~~~~  372 (408)
                      +.|+|.  +.+.++|+|..|.+||+..+
T Consensus       353 ieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  353 IEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             EEeccccCceEEeccCCCcEEEEEeecc
Confidence            999994  34444557899999999863

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=2.2e-23  Score=173.13  Aligned_cols=247  Identities=16%  Similarity=0.220  Sum_probs=191.5

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|...|+.+.|+|+...+++++.|-.|+||.......                       ......|+          
T Consensus       257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-----------------------~~~~~~h~----------  303 (506)
T KOG0289|consen  257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-----------------------PTSSRPHE----------  303 (506)
T ss_pred             ccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-----------------------cccccccc----------
Confidence            458999999999999999999999999999999766543                       24567777          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ++|+.+..+|+  |+||++++.|++..+.|++++............             ..-.+..|+|||..+    
T Consensus       304 --~~V~~ls~h~t--geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~-------------v~~ts~~fHpDgLif----  362 (506)
T KOG0289|consen  304 --EPVTGLSLHPT--GEYLLSASNDGTWAFSDISSGSQLTVVSDETSD-------------VEYTSAAFHPDGLIF----  362 (506)
T ss_pred             --ccceeeeeccC--CcEEEEecCCceEEEEEccCCcEEEEEeecccc-------------ceeEEeeEcCCceEE----
Confidence              88999999766  889999999999999999999877765553211             111268999999887    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              .+|..|+.+++|| +....      .... +.+|.++|..|+|+.+|-+||++ +|+.|++||++..+ .++
T Consensus       363 --------gtgt~d~~vkiwd-lks~~------~~a~-Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-n~k  425 (506)
T KOG0289|consen  363 --------GTGTPDGVVKIWD-LKSQT------NVAK-FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-NFK  425 (506)
T ss_pred             --------eccCCCceEEEEE-cCCcc------cccc-CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-ccc
Confidence                    9999999999999 65432      2223 48899999999999999999999 99999999999443 444


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      .+.     +.. ...+.++.|.+.| .+|+.++.|=+|++++-.+...  +.+..+..|            ++..+.+.|
T Consensus       426 t~~-----l~~-~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W--~~~~~~~~~------------sg~st~v~F  484 (506)
T KOG0289|consen  426 TIQ-----LDE-KKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSW--TEIKELADH------------SGLSTGVRF  484 (506)
T ss_pred             eee-----ccc-cccceeEEEcCCC-CeEEeecceeEEEEEecccccc--eeeehhhhc------------ccccceeee
Confidence            432     232 2368999999999 9999988776676666444321  222333333            567889999


Q ss_pred             ccCCCEEEEeC-CCeEEEEEC
Q 015363          350 ARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd~  369 (408)
                      ..+.+++++++ |..++++.+
T Consensus       485 g~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  485 GEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cccceEEeeccchhheEEeec
Confidence            99999999997 677777654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.5e-23  Score=176.70  Aligned_cols=256  Identities=10%  Similarity=0.158  Sum_probs=190.0

Q ss_pred             ceeeccceEEEEECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .....+.|++++|+|... -+|+.+. -++.||+..+....                       ..+..-.         
T Consensus        22 ~~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~-----------------------k~~srFk---------   68 (487)
T KOG0310|consen   22 VHKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR-----------------------KTFSRFK---------   68 (487)
T ss_pred             cccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhh-----------------------hhHHhhc---------
Confidence            344568899999999643 3555543 37999998765421                       1222222         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|.++.|.  .||.++|+|...|.|+++|+.+...+..+..+..+        +.       .+.|+|++..+   
T Consensus        69 ---~~v~s~~fR--~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~ap--------v~-------~~~f~~~d~t~---  125 (487)
T KOG0310|consen   69 ---DVVYSVDFR--SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAP--------VH-------VTKFSPQDNTM---  125 (487)
T ss_pred             ---cceeEEEee--cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCc--------ee-------EEEecccCCeE---
Confidence               669999995  56999999999999999997765555555555443        22       46788887765   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCce
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                              +++|+.|+.+++|| +....       ....+.+|...|++.+|+|... ++++| .||.|++||++.....
T Consensus       126 --------l~s~sDd~v~k~~d-~s~a~-------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~  189 (487)
T KOG0310|consen  126 --------LVSGSDDKVVKYWD-LSTAY-------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR  189 (487)
T ss_pred             --------EEecCCCceEEEEE-cCCcE-------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce
Confidence                    58899999999999 54422       1323589999999999999765 77888 8999999999966433


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      ...        -.|..+|-++.+-|.| .++|+++ ...|++||+-+|...   +..+..|            ...|+|+
T Consensus       190 v~e--------lnhg~pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~ql---l~~~~~H------------~KtVTcL  244 (487)
T KOG0310|consen  190 VVE--------LNHGCPVESVLALPSG-SLIASAG-GNSVKVWDLTTGGQL---LTSMFNH------------NKTVTCL  244 (487)
T ss_pred             eEE--------ecCCCceeeEEEcCCC-CEEEEcC-CCeEEEEEecCCcee---hhhhhcc------------cceEEEE
Confidence            322        3488999999999999 8888876 467999999977543   1333334            4789999


Q ss_pred             EEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeeccc
Q 015363          348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       348 ~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      .+..++..|++|+ |+.|++||+.+ -+.+..+.....
T Consensus       245 ~l~s~~~rLlS~sLD~~VKVfd~t~-~Kvv~s~~~~~p  281 (487)
T KOG0310|consen  245 RLASDSTRLLSGSLDRHVKVFDTTN-YKVVHSWKYPGP  281 (487)
T ss_pred             EeecCCceEeecccccceEEEEccc-eEEEEeeecccc
Confidence            9999999999998 89999999876 577777665433

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.4e-23  Score=166.59  Aligned_cols=248  Identities=14%  Similarity=0.236  Sum_probs=183.4

Q ss_pred             cceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeee
Q 015363           16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE   95 (408)
Q Consensus        16 ~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   95 (408)
                      .|++... +.........|.++|.+++|+.||..+++|+.|+.+++||+.+++.                        ..
T Consensus        54 ~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~------------------------~~  108 (347)
T KOG0647|consen   54 IWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV------------------------SQ  108 (347)
T ss_pred             EEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe------------------------ee
Confidence            4666653 3333345567999999999999999999999999999999998864                        46


Q ss_pred             eccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCce
Q 015363           96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI  175 (408)
Q Consensus        96 ~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  175 (408)
                      +..|.            .+|.++.|-+..+-..|++|+.|++|+.||++....+..+.++.         .+++.     
T Consensus       109 v~~Hd------------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe---------RvYa~-----  162 (347)
T KOG0647|consen  109 VAAHD------------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE---------RVYAA-----  162 (347)
T ss_pred             eeecc------------cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc---------eeeeh-----
Confidence            78888            88999999887666789999999999999999887777666643         23211     


Q ss_pred             eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL  254 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~  254 (408)
                            |-.          ...++.+..++.|.+|+ +.+.......     ....-.-.+++|+..++....+.| -+|
T Consensus       163 ------Dv~----------~pm~vVata~r~i~vyn-L~n~~te~k~-----~~SpLk~Q~R~va~f~d~~~~alGsiEG  220 (347)
T KOG0647|consen  163 ------DVL----------YPMAVVATAERHIAVYN-LENPPTEFKR-----IESPLKWQTRCVACFQDKDGFALGSIEG  220 (347)
T ss_pred             ------hcc----------CceeEEEecCCcEEEEE-cCCCcchhhh-----hcCcccceeeEEEEEecCCceEeeeecc
Confidence                  111          11236778888899988 5442221110     012223568999999998888888 799


Q ss_pred             eEEEEeCCCCCceeeEeecCCCcccCCc---------CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccc
Q 015363          255 RINLWNLEISNQSFNIVDVKPANMEDLT---------EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF  325 (408)
Q Consensus       255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  325 (408)
                      ++.+..++...+ ..-+.     +..|.         -.|.+|+|+|.. ..|++++.||+..+||-.....+    ++.
T Consensus       221 rv~iq~id~~~~-~~nFt-----FkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~kL----k~s  289 (347)
T KOG0647|consen  221 RVAIQYIDDPNP-KDNFT-----FKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTKL----KTS  289 (347)
T ss_pred             eEEEEecCCCCc-cCcee-----EEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhhh----hcc
Confidence            999999985433 21111     33333         247789999988 89999999999999998876443    555


Q ss_pred             ccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363          326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  359 (408)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~  359 (408)
                      +.+            ..+|++.+|+.+|.++|-+
T Consensus       290 ~~~------------~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  290 ETH------------PQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CcC------------CCccceeEecCCCCEEEEE
Confidence            555            4789999999999998865

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.6e-23  Score=175.54  Aligned_cols=241  Identities=15%  Similarity=0.242  Sum_probs=179.8

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      -.++|.|++-+|+|.+|+.|+-.|.|++|.+.++..                       +..+.+|-            +
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-----------------------L~v~~aHY------------Q  124 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-----------------------LNVLSAHY------------Q  124 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccH-----------------------HHHHHhhc------------c
Confidence            467899999999999999999999999999998873                       56678888            8


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      .|+|+.|+  .||++|++|+.||.|.+|.+..-                                               
T Consensus       125 ~ITcL~fs--~dgs~iiTgskDg~V~vW~l~~l-----------------------------------------------  155 (476)
T KOG0646|consen  125 SITCLKFS--DDGSHIITGSKDGAVLVWLLTDL-----------------------------------------------  155 (476)
T ss_pred             ceeEEEEe--CCCcEEEecCCCccEEEEEEEee-----------------------------------------------
Confidence            89999995  66999999999999999986421                                               


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC--CEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                           +++..++               ...+...+ ..|.-.|+++...+.|  ..++++ .|.++++||+..+ ..+..
T Consensus       156 -----v~a~~~~---------------~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlt  213 (476)
T KOG0646|consen  156 -----VSADNDH---------------SVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLT  213 (476)
T ss_pred             -----cccccCC---------------Cccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEE
Confidence                 1111111               12223333 6888889998877653  577777 8999999999944 44333


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccc--eeEEEE
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISDIK  348 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~  348 (408)
                      +-        -...+.+++.+|-+ +.+..|+.+|.|.+.++.........+..-..|....-...+.+|..  .|+|++
T Consensus       214 i~--------fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa  284 (476)
T KOG0646|consen  214 IT--------FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA  284 (476)
T ss_pred             Ee--------cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE
Confidence            21        25668999999999 99999999999999988765422111122222222223344667777  999999


Q ss_pred             EccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEE
Q 015363          349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVM  390 (408)
Q Consensus       349 ~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  390 (408)
                      .+-||.+|++|+ ||.|++||+.. .++++++....++...+-
T Consensus       285 is~DgtlLlSGd~dg~VcvWdi~S-~Q~iRtl~~~kgpVtnL~  326 (476)
T KOG0646|consen  285 ISTDGTLLLSGDEDGKVCVWDIYS-KQCIRTLQTSKGPVTNLQ  326 (476)
T ss_pred             EecCccEEEeeCCCCCEEEEecch-HHHHHHHhhhccccceeE
Confidence            999999999997 79999999997 788888875455544443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8.4e-23  Score=184.61  Aligned_cols=248  Identities=15%  Similarity=0.266  Sum_probs=183.5

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|.+.-+.|+|.|+|.+|++++.||.|++|+.......                 |+.     +.-+.           
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----------------P~t-----i~~~g-----------   56 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----------------PET-----IDISG-----------   56 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----------------Cch-----hhccC-----------
Confidence            478999999999999999999999999999996654210                 111     11122           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE---EEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK---KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                       ..|.+++-  .  +.+|++++.+++|.+|...+++..   ..+..+..                  .++++.+|+.+  
T Consensus        57 -~~v~~ia~--~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r------------------~~~v~g~g~~i--  111 (933)
T KOG1274|consen   57 -ELVSSIAC--Y--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIR------------------DLAVSGSGKMI--  111 (933)
T ss_pred             -ceeEEEee--c--ccceEEeeccceEEEeeCCCCCccceeeeeeccce------------------EEEEecCCcEE--
Confidence             55777776  3  449999999999999999877643   33333221                  57899999998  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                +.|+.|-.|++-+ ....      ...+. +.+|..+|.++.++|.+++||+. -||.|++||+.. +.+
T Consensus       112 ----------aagsdD~~vK~~~-~~D~------s~~~~-lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~  172 (933)
T KOG1274|consen  112 ----------AAGSDDTAVKLLN-LDDS------SQEKV-LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GIL  172 (933)
T ss_pred             ----------EeecCceeEEEEe-cccc------chhee-ecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chh
Confidence                      9999999999866 3221      22223 48999999999999999999999 899999999994 333


Q ss_pred             eeEeecCCCcccCC-cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          268 FNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       268 ~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      ..++.--....... ...+..++|+|++ ..|+..+.|+.|++|+.......    ..+....          +.+.+.+
T Consensus       173 ~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~----f~Lr~~~----------~ss~~~~  237 (933)
T KOG1274|consen  173 SKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQ----FKLRDKL----------SSSKFSD  237 (933)
T ss_pred             hhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeh----eeecccc----------cccceEE
Confidence            33321111111111 4556789999998 67777788999999999888643    4443332          2345999


Q ss_pred             EEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          347 IKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       347 ~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      ++|+|+|+|||+++ +|.|.|||+++
T Consensus       238 ~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  238 LQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEEcCCCcEEeeeccCCcEEEEeccc
Confidence            99999999999997 79999999985

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=3.3e-24  Score=171.84  Aligned_cols=220  Identities=13%  Similarity=0.236  Sum_probs=177.7

Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      ++.+-|..|+|+  |++|++|+.||.|.+|+..+|+...-++.+....-...+..+       .++.|+.|...+     
T Consensus       213 KSh~EcA~FSPD--gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aV-------lci~FSRDsEMl-----  278 (508)
T KOG0275|consen  213 KSHVECARFSPD--GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAV-------LCISFSRDSEML-----  278 (508)
T ss_pred             ccchhheeeCCC--CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccce-------EEEeecccHHHh-----
Confidence            366889999765  889999999999999999999987777665544222223334       489999999987     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             ++|+.||.|++|. +      ..+.|.+.+..+|...|+++.|+.|+..+.++ .|.++++.-+. .+++++ 
T Consensus       279 -------AsGsqDGkIKvWr-i------~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LK-  342 (508)
T KOG0275|consen  279 -------ASGSQDGKIKVWR-I------ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLK-  342 (508)
T ss_pred             -------hccCcCCcEEEEE-E------ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHH-
Confidence                   9999999999999 4      45788888878999999999999999999998 89999999999 455543 


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                            .+.+|...|+...|.++| ..+++++.||+|++|+.++...+    .+|+....          .-+|+.+..-
T Consensus       343 ------EfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~----~Tfk~~~~----------d~~vnsv~~~  401 (508)
T KOG0275|consen  343 ------EFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECL----STFKPLGT----------DYPVNSVILL  401 (508)
T ss_pred             ------HhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhh----hhccCCCC----------cccceeEEEc
Confidence                  379999999999999999 99999999999999999988544    44443321          2578888888


Q ss_pred             cC-CCEEEEeC-CCeEEEEECCCCCCceeeeeeccc
Q 015363          351 RN-GRHILSRD-YMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       351 pd-g~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      |. ...++.+. .++|.+-++.  |+.+++|..-..
T Consensus       402 PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSGkR  435 (508)
T KOG0275|consen  402 PKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSGKR  435 (508)
T ss_pred             CCCCceEEEEcCCCeEEEEecc--ceEEeeeccCCc
Confidence            84 45677775 4899999994  788888865443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=1.3e-23  Score=175.64  Aligned_cols=247  Identities=15%  Similarity=0.218  Sum_probs=172.5

Q ss_pred             cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                      ....+.+.|+.++..|.. ...+|+.+..+.|.|||.....-.........+     +-.+.........++|++.....
T Consensus       119 ~~i~h~gEVnRaRymPQn-p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~P-----dl~L~gH~~eg~glsWn~~~~g~  192 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQN-PNIVATKTSSGDVYVFDYTKHPSKPKASGECRP-----DLRLKGHEKEGYGLSWNRQQEGT  192 (422)
T ss_pred             EeccCCccchhhhhCCCC-CcEEEecCCCCCEEEEEeccCCCcccccccCCC-----ceEEEeeccccccccccccccee
Confidence            334555779999999864 358888899999999998754322221111111     11111111223367787765543


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccc-cccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-LVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEI  263 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~  263 (408)
                                 +++++.|+.|.+|| +...... ....++.. ..+|...|..++|++-.. +|+++ +|+.+.|||+++
T Consensus       193 -----------Lls~~~d~~i~lwd-i~~~~~~~~~~~p~~~-~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~  259 (422)
T KOG0264|consen  193 -----------LLSGSDDHTICLWD-INAESKEDKVVDPKTI-FSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS  259 (422)
T ss_pred             -----------EeeccCCCcEEEEe-ccccccCCccccceEE-eecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence                       59999999999999 7664442 22333334 489999999999999764 55555 999999999995


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                      ......      ....+|...|.|++|+|.+..+||+|+.|++|.+||+|+.+.   ++.++++|            ...
T Consensus       260 ~~~~~~------~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H------------~de  318 (422)
T KOG0264|consen  260 NTSKPS------HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGH------------EDE  318 (422)
T ss_pred             CCCCCc------ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccCC------------Ccc
Confidence            211111      236789999999999999889999999999999999998753   45666666            478


Q ss_pred             eEEEEEccCCC-EEEEe-CCCeEEEEECCCCCC----------ceeeeeecccccceEEecC
Q 015363          344 ISDIKFARNGR-HILSR-DYMTLKLWDINMDSG----------PVATFQVHEHLRPKVMHSS  393 (408)
Q Consensus       344 i~~~~~spdg~-~l~s~-~d~~v~~wd~~~~~~----------~~~~~~~~~~~~~~~~~~~  393 (408)
                      |.+|.|||+.. .||++ .|+.+.+||+..-+.          +...+..|.+++.++..+.
T Consensus       319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Dfs  380 (422)
T KOG0264|consen  319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFS  380 (422)
T ss_pred             eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccccc
Confidence            99999999754 66665 589999999986433          2334556666666665543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=4.2e-23  Score=189.99  Aligned_cols=264  Identities=16%  Similarity=0.261  Sum_probs=184.1

Q ss_pred             ccceEEEEECCCCCeEEEee--cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      ...|.+++.+|||..+|||+  .||.++||+.+.-..      +.+..+..     -.+.+..+..|.            
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------~~~~~~~~-----l~k~l~~m~~h~------------   69 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------EKEEKNEN-----LPKHLCTMDDHD------------   69 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccc------hhhhhhcc-----cchhheeecccc------------
Confidence            44699999999999999999  899999999763221      11000000     112344566677            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc------------------EEEEeccCCCCcccCCCCCeEeecCCc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK------------------VKKVFDWNVHPEKAAGNGPIFGSHVSA  174 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~  174 (408)
                      +.|+|+.|+|  ||++||+|++|+.|.+|+....-                  ....+..|        ++.|       
T Consensus        70 ~sv~CVR~S~--dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H--------~~DV-------  132 (942)
T KOG0973|consen   70 GSVNCVRFSP--DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH--------DSDV-------  132 (942)
T ss_pred             CceeEEEECC--CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC--------CCcc-------
Confidence            7899999965  59999999999999999987410                  11111221        1222       


Q ss_pred             eeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC
Q 015363          175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD  253 (408)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  253 (408)
                      ..++|+|++.++            ++++-|++|.+|+ ...      ....+. +.+|...|..+.|+|-|++||+- +|
T Consensus       133 ~Dv~Wsp~~~~l------------vS~s~DnsViiwn-~~t------F~~~~v-l~~H~s~VKGvs~DP~Gky~ASqsdD  192 (942)
T KOG0973|consen  133 LDVNWSPDDSLL------------VSVSLDNSVIIWN-AKT------FELLKV-LRGHQSLVKGVSWDPIGKYFASQSDD  192 (942)
T ss_pred             ceeccCCCccEE------------EEecccceEEEEc-ccc------ceeeee-eecccccccceEECCccCeeeeecCC
Confidence            379999999998            9999999999999 322      234444 38999999999999999999998 99


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC----CCeEEEEEcCCCceeccccccccccc
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRLIDMRQSALCDTHSKLFEEQE  329 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~  329 (408)
                      ++|++|++...+- .+.+. +|..-......++.+.|+||| .+|++...    -..+.|.+-.+.+.-    +.|-|| 
T Consensus       193 rtikvwrt~dw~i-~k~It-~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~~----~~LvGH-  264 (942)
T KOG0973|consen  193 RTLKVWRTSDWGI-EKSIT-KPFEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKVD----KDLVGH-  264 (942)
T ss_pred             ceEEEEEccccee-eEeec-cchhhCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCceee----eeeecC-
Confidence            9999999774322 22211 111111234557899999999 99988743    346777776555322    455555 


Q ss_pred             CCCCccccccccceeEEEEEccC-----CC------------EEEEeC-CCeEEEEECCCCCCceee
Q 015363          330 APGTRSFFTEIIASISDIKFARN-----GR------------HILSRD-YMTLKLWDINMDSGPVAT  378 (408)
Q Consensus       330 ~~~~~~~~~~h~~~i~~~~~spd-----g~------------~l~s~~-d~~v~~wd~~~~~~~~~~  378 (408)
                                 .+++.++.|+|.     .+            .+|+|+ |++|.||..... +++..
T Consensus       265 -----------~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl~v  319 (942)
T KOG0973|consen  265 -----------SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPLFV  319 (942)
T ss_pred             -----------CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC-Cchhh
Confidence                       589999999981     11            455676 899999999763 55443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.2e-23  Score=186.01  Aligned_cols=250  Identities=15%  Similarity=0.224  Sum_probs=165.4

Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCC-------------cccCC---CCCeEeec--C
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP-------------EKAAG---NGPIFGSH--V  172 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~---~~~v~~~~--~  172 (408)
                      |++.|.++.|+++  |++||+|+.|+.|+||.+...+...........             .....   .+......  .
T Consensus       266 h~gaIw~mKFS~D--GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  266 HKGAIWAMKFSHD--GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             cCCcEEEEEeCCC--CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            4488999999755  999999999999999998773322111111000             00000   00000000  0


Q ss_pred             Cceee-----EEccCCCeeecccccc---------cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEE
Q 015363          173 SAIPK-----SYMANGGCGERNFGCA---------SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS  238 (408)
Q Consensus       173 ~~~~~-----~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  238 (408)
                      ...++     ++.-..+.+..+.||+         .+.++++++.|.+|++|+ +      ....|++.|  .|...|+|
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh-~------~~~~CL~~F--~HndfVTc  414 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWH-P------GRKECLKVF--SHNDFVTC  414 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeec-C------CCcceeeEE--ecCCeeEE
Confidence            00000     0111112222333433         345689999999999999 4      336677776  89999999


Q ss_pred             EEeCC-CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363          239 ISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA  316 (408)
Q Consensus       239 i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  316 (408)
                      |+|+| |.++|++| -|+.|+||++. ..+...        ...-..-|++++|.|+| +..+.|+.+|.+++|++...+
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~-d~~Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk  484 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSIS-DKKVVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLK  484 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecC-cCeeEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCe
Confidence            99999 56899999 79999999998 444433        22334779999999999 999999999999999998776


Q ss_pred             eecccccccccccCCCCccccccccceeEEEEEccCC--CEEEEeCCCeEEEEECCCCCCceeeeeecccccceEE
Q 015363          317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVM  390 (408)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg--~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  390 (408)
                      ...    .+.-+.....   -..| ..|+.+.|.|..  +.|+|..|..|+|+|.+. ..++..|+|+......+.
T Consensus       485 ~~~----~~~I~~~~~K---k~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~  551 (712)
T KOG0283|consen  485 LVS----DFHIRLHNKK---KKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQIS  551 (712)
T ss_pred             EEE----eeeEeeccCc---cccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCccee
Confidence            541    1111100000   0112 279999999843  488888999999999986 689999998877755443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=9.8e-23  Score=178.74  Aligned_cols=272  Identities=14%  Similarity=0.176  Sum_probs=205.0

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      +..+|..-|..+++.+.. .++++++||++++|+-..++..                     ....+.+|.         
T Consensus         9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l---------------------~~~~~~~~~---------   57 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL---------------------ETHAFEGPK---------   57 (745)
T ss_pred             EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc---------------------cceecccCc---------
Confidence            345799999888877554 6999999999999997665431                     223466666         


Q ss_pred             ccccceeE-EEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          110 EIEEKINK-IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       110 ~~~~~v~~-v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                         +-|.. +++.+ .++-.+++|++|.+|.+|.+.+.....++..|...        |.       ++....++. +  
T Consensus        58 ---g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn--------VC-------~ls~~~~~~-~--  115 (745)
T KOG0301|consen   58 ---GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN--------VC-------SLSIGEDGT-L--  115 (745)
T ss_pred             ---ceeeccceecc-ccCcceEeecccceEEEEecCCCCchhhhhccccc--------ee-------eeecCCcCc-e--
Confidence               34555 88866 44557999999999999999999888888887543        32       333344444 4  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                ++|+.|.++++|. .        +++... +.+|...|.+++.-|.+ .+++| .|.+|++|.-.   ..
T Consensus       116 ----------iSgSWD~TakvW~-~--------~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~  171 (745)
T KOG0301|consen  116 ----------ISGSWDSTAKVWR-I--------GELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TL  171 (745)
T ss_pred             ----------EecccccceEEec-c--------hhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccCC---ch
Confidence                      9999999999998 3        223333 48999999999999988 77788 99999999864   33


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      .+       ++.+|.+.|+.+++-+++  .|+++++||.|++|++. +..+    ..+.+|            +.-|.++
T Consensus       172 l~-------tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~-ge~l----~~~~gh------------tn~vYsi  225 (745)
T KOG0301|consen  172 LK-------TFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLD-GEVL----LEMHGH------------TNFVYSI  225 (745)
T ss_pred             hh-------hhccchhheeeeEEecCC--CeEeecCCceEEEEecc-Ccee----eeeecc------------ceEEEEE
Confidence            33       378999999999999986  68999999999999994 4333    555555            5789999


Q ss_pred             EEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeee--eceeeec
Q 015363          348 KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGL--DNIHTLY  407 (408)
Q Consensus       348 ~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~  407 (408)
                      +...++..++++ .|++++||+..   .+.+.+.-..-..-..+.+..+|++..  |.+.++|
T Consensus       226 s~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVf  285 (745)
T KOG0301|consen  226 SMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVF  285 (745)
T ss_pred             EecCCCCeEEEecCCceEEEeecC---ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEE
Confidence            977777777776 57999999984   788888765555666666778887644  5555544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.6e-24  Score=190.69  Aligned_cols=246  Identities=17%  Similarity=0.253  Sum_probs=181.7

Q ss_pred             ceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           37 IISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        37 ~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      .+..+.|+. +.++|||++..|.|.+||+....                    .-+.++.|..|+            -.|
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--------------------rnk~l~~f~EH~------------Rs~  136 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI--------------------RNKLLTVFNEHE------------RSA  136 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccc--------------------cchhhhHhhhhc------------cce
Confidence            345677775 47899999999999999987621                    112355788888            779


Q ss_pred             eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (408)
                      +++.|++... .+|++|+.||+|++||++..+....+..+.        ..+.       .+.|+|.....         
T Consensus       137 ~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nS--------ESiR-------DV~fsp~~~~~---------  191 (839)
T KOG0269|consen  137 NKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNS--------ESIR-------DVKFSPGYGNK---------  191 (839)
T ss_pred             eeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccc--------hhhh-------ceeeccCCCce---------
Confidence            9999998655 499999999999999999887666555532        2233       57787765433         


Q ss_pred             ccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce-eeEeec
Q 015363          196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS-FNIVDV  273 (408)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-~~~~~~  273 (408)
                        ++++...|.+.+|| ++..     .++...+ .+|.++|.++.|+|++.+||+| .|+.|+|||....... ...+  
T Consensus       192 --F~s~~dsG~lqlWD-lRqp-----~r~~~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--  260 (839)
T KOG0269|consen  192 --FASIHDSGYLQLWD-LRQP-----DRCEKKL-TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--  260 (839)
T ss_pred             --EEEecCCceEEEee-ccCc-----hhHHHHh-hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--
Confidence              48889999999999 6543     3344444 8999999999999999999999 9999999999844332 2211  


Q ss_pred             CCCcccCCcCCeEEEEEcCCCCceEEEEeC--CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          274 KPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       274 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                            ....+|.+++|.|..+..||+++.  |-.|+|||++..-   .|..+            +..|...++.++|..
T Consensus       261 ------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY---IP~~t------------~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  261 ------NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY---IPYAT------------FLEHTDSVTGIAWDS  319 (839)
T ss_pred             ------eecceeeeeeeccCccchhhhhhccccceEEEEeecccc---cccee------------eeccCccccceeccC
Confidence                  124678999999999788888865  8899999998653   22233            445568899999975


Q ss_pred             -CCCEEEEeC-CCeEEEEECCC
Q 015363          352 -NGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       352 -dg~~l~s~~-d~~v~~wd~~~  371 (408)
                       |-..|.+++ |++|..-.+++
T Consensus       320 ~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  320 GDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             CCceeeEeecCccHHHHhhhhc
Confidence             344556665 67776665554

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.2e-23  Score=183.18  Aligned_cols=237  Identities=17%  Similarity=0.239  Sum_probs=182.5

Q ss_pred             cccCcccceeeecccCcCc---ccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccC
Q 015363           10 AAAQPLEWKFSQVFGERTA---GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSR   86 (408)
Q Consensus        10 ~~~~~~~w~~~~~~~~~~~---~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   86 (408)
                      ..+.-..|++.+-.++...   .....|.++|+.++...+|+.|+++|.|-+|++|+......                 
T Consensus        45 RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~-----------------  107 (735)
T KOG0308|consen   45 RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT-----------------  107 (735)
T ss_pred             CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-----------------
Confidence            3355677888876554322   23446999999999999999999999999999999775531                 


Q ss_pred             CCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcc---cCC
Q 015363           87 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEK---AAG  163 (408)
Q Consensus        87 ~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~  163 (408)
                          -++..+..|.            +.|.|+++- .++..++|+|+-|+.|.+||++++....+...+.....   ..+
T Consensus       108 ----~c~stir~H~------------DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~  170 (735)
T KOG0308|consen  108 ----FCMSTIRTHK------------DYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP  170 (735)
T ss_pred             ----hhHhhhhccc------------chheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence                1345677787            789999983 34567999999999999999998844222222222211   123


Q ss_pred             CCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC
Q 015363          164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS  243 (408)
Q Consensus       164 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  243 (408)
                      ..+++       +++.+++|..+            ++|+..+.+++|| .+....      +-. +.+|...|+.+..++
T Consensus       171 k~siY-------SLA~N~t~t~i------------vsGgtek~lr~wD-prt~~k------imk-LrGHTdNVr~ll~~d  223 (735)
T KOG0308|consen  171 KDSIY-------SLAMNQTGTII------------VSGGTEKDLRLWD-PRTCKK------IMK-LRGHTDNVRVLLVND  223 (735)
T ss_pred             cccee-------eeecCCcceEE------------EecCcccceEEec-cccccc------eee-eeccccceEEEEEcC
Confidence            34455       77888888776            9999999999999 432111      112 479999999999999


Q ss_pred             CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363          244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA  316 (408)
Q Consensus       244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  316 (408)
                      ||+.++++ +||+|++||+. .+.++..       +..|...|+++..+|+- ..+++|+.||.|..=|+++..
T Consensus       224 DGt~~ls~sSDgtIrlWdLg-qQrCl~T-------~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  224 DGTRLLSASSDGTIRLWDLG-QQRCLAT-------YIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             CCCeEeecCCCceEEeeecc-ccceeee-------EEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCch
Confidence            99999999 99999999999 5566654       56789999999999999 999999999999999999854

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.5e-22  Score=161.71  Aligned_cols=260  Identities=15%  Similarity=0.246  Sum_probs=173.0

Q ss_pred             eEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeE
Q 015363           38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK  117 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  117 (408)
                      -.|+.|++-|.+||+|+.||.|.|||+.+...                       ...+.+|.            -+|++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-----------------------ar~lsaH~------------~pi~s   70 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-----------------------ARMLSAHV------------RPITS   70 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch-----------------------hhhhhccc------------cceeE
Confidence            68999999999999999999999999987652                       35678888            78999


Q ss_pred             EEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC--eeecccccccC
Q 015363          118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG--CGERNFGCASN  195 (408)
Q Consensus       118 v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~l~~~~~~~~~  195 (408)
                      ++|+++  |.+|++++.|..|.+||+..+.+...+.+.         .+|+       ...|+|...  ++.++-.....
T Consensus        71 l~WS~d--gr~LltsS~D~si~lwDl~~gs~l~rirf~---------spv~-------~~q~hp~k~n~~va~~~~~sp~  132 (405)
T KOG1273|consen   71 LCWSRD--GRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---------SPVW-------GAQWHPRKRNKCVATIMEESPV  132 (405)
T ss_pred             EEecCC--CCEeeeecCCceeEEEeccCCCceeEEEcc---------Cccc-------eeeeccccCCeEEEEEecCCcE
Confidence            999755  999999999999999999999887776663         2344       445665433  22111111111


Q ss_pred             ccccCCCCCceeeeceeeeccccccccccceeecccc-ccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeec
Q 015363          196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  273 (408)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~  273 (408)
                      .+.++.   +.-.+               ...-..+. +....+..|++.|+++++| ..|.+.++|..+. ++...+++
T Consensus       133 vi~~s~---~~h~~---------------Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~-e~vas~ri  193 (405)
T KOG1273|consen  133 VIDFSD---PKHSV---------------LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL-ECVASFRI  193 (405)
T ss_pred             EEEecC---Cceee---------------ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh-eeeeeeee
Confidence            001110   00000               00000000 0111223688999999999 9999999999944 44443221


Q ss_pred             CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc--cceeEEEEEcc
Q 015363          274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI--IASISDIKFAR  351 (408)
Q Consensus       274 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~sp  351 (408)
                           .. ...|.++.++..| +.|+.-+.|+.|+.|+++.--.+.+....-..|       .++.-  ...=.+++||.
T Consensus       194 -----ts-~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~-------K~qDvVNk~~Wk~ccfs~  259 (405)
T KOG1273|consen  194 -----TS-VQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH-------KLQDVVNKLQWKKCCFSG  259 (405)
T ss_pred             -----ch-heeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhH-------HHHHHHhhhhhhheeecC
Confidence                 11 3568899999999 999999999999999987321110000000001       01000  01235678999


Q ss_pred             CCCEEEEeC-C-CeEEEEECCCCCCceeeeeeccc
Q 015363          352 NGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       352 dg~~l~s~~-d-~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      +|.|+++++ . ..++||.... |.+++.+.|..+
T Consensus       260 dgeYv~a~s~~aHaLYIWE~~~-GsLVKILhG~kg  293 (405)
T KOG1273|consen  260 DGEYVCAGSARAHALYIWEKSI-GSLVKILHGTKG  293 (405)
T ss_pred             CccEEEeccccceeEEEEecCC-cceeeeecCCch
Confidence            999999985 3 8999999998 899999998774

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=7.8e-23  Score=163.58  Aligned_cols=272  Identities=14%  Similarity=0.184  Sum_probs=196.8

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCc--------ccccccccc-------cc-cCCCcc-cee
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQ--------RRDLEMMDY-------SM-SRHPEF-RYK   93 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~--------~~~~~~~~~-------~~-~~~p~~-~~~   93 (408)
                      -.+|.+.|+||+|++.+.++++++.|++..||...-+-..+..        ..+++..+.       .. ...|.. ..+
T Consensus       186 Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl  265 (481)
T KOG0300|consen  186 YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPL  265 (481)
T ss_pred             ecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeee
Confidence            3579999999999999999999999999999984322111110        001111111       00 011122 235


Q ss_pred             eeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCC
Q 015363           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS  173 (408)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  173 (408)
                      ..+.+|.            +.|.+..|...  |+.+++++.|++..+||+++++.+..+.++..+-        .     
T Consensus       266 ~~ltgH~------------~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL--------t-----  318 (481)
T KOG0300|consen  266 MRLTGHR------------AVVSACDWLAG--GQQMVTASWDRTANLWDVETGEVVNILTGHDSEL--------T-----  318 (481)
T ss_pred             eeeeccc------------cceEehhhhcC--cceeeeeeccccceeeeeccCceeccccCcchhc--------c-----
Confidence            5677887            77999999754  8899999999999999999999999888876541        1     


Q ss_pred             ceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c
Q 015363          174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D  252 (408)
Q Consensus       174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~  252 (408)
                        -++-+|+.+++            ++.+.|.++++|| ++.     ....+.. +++|...|+++.|.-+.+ +++| +
T Consensus       319 --HcstHptQrLV------------vTsSrDtTFRLWD-FRe-----aI~sV~V-FQGHtdtVTS~vF~~dd~-vVSgSD  376 (481)
T KOG0300|consen  319 --HCSTHPTQRLV------------VTSSRDTTFRLWD-FRE-----AIQSVAV-FQGHTDTVTSVVFNTDDR-VVSGSD  376 (481)
T ss_pred             --ccccCCcceEE------------EEeccCceeEecc-chh-----hcceeee-ecccccceeEEEEecCCc-eeecCC
Confidence              34566666665            9999999999999 542     1222333 489999999999987765 5666 9


Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363          253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  332 (408)
Q Consensus       253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  332 (408)
                      |.+|++||++.....+..+.        ...++..++.+..+ .++|.-..+..|++||+....+..-|-..-       
T Consensus       377 DrTvKvWdLrNMRsplATIR--------tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPrtsR-------  440 (481)
T KOG0300|consen  377 DRTVKVWDLRNMRSPLATIR--------TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPRTSR-------  440 (481)
T ss_pred             CceEEEeeeccccCcceeee--------cCCccceeEeecCC-ceEEeccCCceEEEEecCCCccccCCcccc-------
Confidence            99999999998877776543        25678899999887 899999889999999998765432222222       


Q ss_pred             CccccccccceeEEEEEccCC--CEEEEe-CCCeEEEEECCCC
Q 015363          333 TRSFFTEIIASISDIKFARNG--RHILSR-DYMTLKLWDINMD  372 (408)
Q Consensus       333 ~~~~~~~h~~~i~~~~~spdg--~~l~s~-~d~~v~~wd~~~~  372 (408)
                           ++|...|.|++|..+-  .-|+++ -|..+.-|+++.+
T Consensus       441 -----qgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  441 -----QGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             -----cccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence                 4556889999998642  345555 5899999999763

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.5e-22  Score=169.54  Aligned_cols=267  Identities=15%  Similarity=0.227  Sum_probs=184.2

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      -.+.|++|.|+|...+|++|+.||+++||.+++....                     .++.+.-..            .
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------------------~lqS~~l~~------------f  258 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------------------KLQSIHLEK------------F  258 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------------------hheeeeecc------------C
Confidence            3578999999999999999999999999999877542                     223332222            6


Q ss_pred             ceeEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcc------cCCCCCeEe----------ec-----
Q 015363          114 KINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEK------AAGNGPIFG----------SH-----  171 (408)
Q Consensus       114 ~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~------~~~~~~v~~----------~~-----  171 (408)
                      +|.+.+|.|.  |+ .+++++....++.||+.+.+..++......+..      ..+.+.+.+          ..     
T Consensus       259 Pi~~a~f~p~--G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e  336 (514)
T KOG2055|consen  259 PIQKAEFAPN--GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE  336 (514)
T ss_pred             ccceeeecCC--CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence            7999999764  77 889999999999999998776555443332210      111121111          11     


Q ss_pred             --------CCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC
Q 015363          172 --------VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS  243 (408)
Q Consensus       172 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  243 (408)
                              .....++|+.+++.+            ++.+.+|.|.+|| +...      .+.+.+.....-.-++++.++
T Consensus       337 li~s~KieG~v~~~~fsSdsk~l------------~~~~~~GeV~v~n-l~~~------~~~~rf~D~G~v~gts~~~S~  397 (514)
T KOG2055|consen  337 LITSFKIEGVVSDFTFSSDSKEL------------LASGGTGEVYVWN-LRQN------SCLHRFVDDGSVHGTSLCISL  397 (514)
T ss_pred             hhheeeeccEEeeEEEecCCcEE------------EEEcCCceEEEEe-cCCc------ceEEEEeecCccceeeeeecC
Confidence                    011245666677666            7788889999999 5442      445554333233456788889


Q ss_pred             CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC--CCeEEEEEcCCCceecc
Q 015363          244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDT  320 (408)
Q Consensus       244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~  320 (408)
                      ++.+||+| +.|.|.|||.++........++  .++......|++|+|+|+. ++||.++.  +..+++-.+.+....  
T Consensus       398 ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPi--k~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVF--  472 (514)
T KOG2055|consen  398 NGSYLATGSDSGIVNIYDGNSCFASTNPKPI--KTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVF--  472 (514)
T ss_pred             CCceEEeccCcceEEEeccchhhccCCCCch--hhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeee--
Confidence            99999999 8999999997632211111000  2245566789999999999 99988876  678999888765432  


Q ss_pred             cccccccccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECC
Q 015363          321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN  370 (408)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~  370 (408)
                        .-++...         .-.+.|+|++|||.|-+||.|.+ |.|.+|.+.
T Consensus       473 --sNfP~~n---------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  473 --SNFPTSN---------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             --ccCCCCC---------CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence              2222221         11367999999999999999975 999999884

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.3e-21  Score=168.89  Aligned_cols=250  Identities=15%  Similarity=0.230  Sum_probs=189.5

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ..+|.|+||+.+.+.||.+-.+|.|.||++..+                      +-+...+.+++.           ..
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~----------------------w~~~~vi~g~~d-----------rs   71 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN----------------------WFLEPVIHGPED-----------RS   71 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCC----------------------ceeeEEEecCCC-----------Cc
Confidence            578999999999999999999999999998754                      224455666653           77


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      |.+++|++   +..|++.+.+|.|.-||+.+.+.+......        .+.++       +++.+|.+..+        
T Consensus        72 IE~L~W~e---~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~--------gg~IW-------siai~p~~~~l--------  125 (691)
T KOG2048|consen   72 IESLAWAE---GGRLFSSGLSGSITEWDLHTLKQKYNIDSN--------GGAIW-------SIAINPENTIL--------  125 (691)
T ss_pred             eeeEEEcc---CCeEEeecCCceEEEEecccCceeEEecCC--------Cccee-------EEEeCCccceE--------
Confidence            99999963   458999999999999999999887766654        34577       68888888876        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeec
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  273 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~  273 (408)
                          +.|..||.+..++ .......    ..+. +....++|.+++|+|++..+++| .||.|++||..... ...++..
T Consensus       126 ----~IgcddGvl~~~s-~~p~~I~----~~r~-l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~-t~~~~~~  194 (691)
T KOG2048|consen  126 ----AIGCDDGVLYDFS-IGPDKIT----YKRS-LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ-TLHIITM  194 (691)
T ss_pred             ----EeecCCceEEEEe-cCCceEE----EEee-cccccceEEEEEecCCccEEEecccCceEEEEEcCCCc-eEEEeee
Confidence                8888999666555 2221111    1111 24456899999999999999999 99999999999444 4444433


Q ss_pred             CCCcccC-CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363          274 KPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  352 (408)
Q Consensus       274 ~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd  352 (408)
                      ...++.. ...-|+++.|-.++  .+++|...|+|.+||...+.+.    +.+..|            .+.|.+++..++
T Consensus       195 ~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLi----qS~~~h------------~adVl~Lav~~~  256 (691)
T KOG2048|consen  195 QLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLI----QSHSCH------------DADVLALAVADN  256 (691)
T ss_pred             cccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchh----hhhhhh------------hcceeEEEEcCC
Confidence            3233333 34457888888776  8999999999999999998765    555555            477999999999


Q ss_pred             CCEEEEeC-CCeEEEEECCCC
Q 015363          353 GRHILSRD-YMTLKLWDINMD  372 (408)
Q Consensus       353 g~~l~s~~-d~~v~~wd~~~~  372 (408)
                      +.++++++ |+.|..+...+.
T Consensus       257 ~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  257 EDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             CCeEEEccCCCceEEEEecCC
Confidence            88888875 888888877764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=4.9e-22  Score=158.34  Aligned_cols=235  Identities=17%  Similarity=0.255  Sum_probs=172.4

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ....|..+|.+++|.++. .+++|+.||.|+++|+.++..                        ..+..|.         
T Consensus        49 ~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~------------------------~~igth~---------   94 (323)
T KOG1036|consen   49 LKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNE------------------------DQIGTHD---------   94 (323)
T ss_pred             hheecCCceeeeeccCCc-eEEEeccCceEEEEEecCCcc------------------------eeeccCC---------
Confidence            346799999999998754 599999999999999998864                        2466677         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         .+|.||.+++.  ...+++|+.|++|++||.++.........         ...|+         +.+-.|..|   
T Consensus        95 ---~~i~ci~~~~~--~~~vIsgsWD~~ik~wD~R~~~~~~~~d~---------~kkVy---------~~~v~g~~L---  148 (323)
T KOG1036|consen   95 ---EGIRCIEYSYE--VGCVISGSWDKTIKFWDPRNKVVVGTFDQ---------GKKVY---------CMDVSGNRL---  148 (323)
T ss_pred             ---CceEEEEeecc--CCeEEEcccCccEEEEecccccccccccc---------CceEE---------EEeccCCEE---
Confidence               88999999865  34899999999999999987433222221         11233         333445554   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc-e
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-S  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~  267 (408)
                               +.|..+..+.+|| +++.+.......     ..-...+++|++-|++.-++++ -||+|.+=.++.... .
T Consensus       149 ---------vVg~~~r~v~iyD-LRn~~~~~q~re-----S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~  213 (323)
T KOG1036|consen  149 ---------VVGTSDRKVLIYD-LRNLDEPFQRRE-----SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ  213 (323)
T ss_pred             ---------EEeecCceEEEEE-cccccchhhhcc-----ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence                     8899999999999 776554332211     2334678999999988777777 899998866664311 1


Q ss_pred             eeEeecCCCcccCCc---------CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc
Q 015363          268 FNIVDVKPANMEDLT---------EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT  338 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (408)
                      .+.+     .+..|.         -+|.+|+|+|-. ..||+|+.||.|.+||+.+.+.+    +.+...+         
T Consensus       214 skky-----aFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rKrl----~q~~~~~---------  274 (323)
T KOG1036|consen  214 SKKY-----AFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRKRL----KQLAKYE---------  274 (323)
T ss_pred             hhce-----eEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchhhh----hhccCCC---------
Confidence            1111     123332         468899999998 89999999999999999988654    5555542         


Q ss_pred             cccceeEEEEEccCCCEEEEeCC
Q 015363          339 EIIASISDIKFARNGRHILSRDY  361 (408)
Q Consensus       339 ~h~~~i~~~~~spdg~~l~s~~d  361 (408)
                         ..|..++|+.||..||.+++
T Consensus       275 ---~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  275 ---TSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ---CceEEEEeccCCCeEEEEec
Confidence               57999999999999998843

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=4.4e-24  Score=187.95  Aligned_cols=235  Identities=21%  Similarity=0.360  Sum_probs=192.5

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      +...|...|.|+..-..++.+++|+.|-.+-||.+.....                       +..|.+|+         
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-----------------------i~S~~~he---------   70 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-----------------------ITSLTGHE---------   70 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-----------------------hheeeccC---------
Confidence            3467999999999977899999999999999999865542                       34588998         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         .+|.++.|.+.  ..+|++|+.+|+|++||+++.+....+..+..+        +       +.+.|+|-+.+.   
T Consensus        71 ---spIeSl~f~~~--E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--------~-------~sv~f~P~~~~~---  127 (825)
T KOG0267|consen   71 ---SPIESLTFDTS--ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--------I-------TSVDFHPYGEFF---  127 (825)
T ss_pred             ---CcceeeecCcc--hhhhcccccCCceeeeehhhhhhhhhhhccccC--------c-------ceeeeccceEEe---
Confidence               88999999754  558899999999999999988877766665432        1       267899999986   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                               ++++.|..+++|| .+.      ..|.+.+ .+|...+..+.|+|+|++++.+ +|..+++||... ++..
T Consensus       128 ---------a~gStdtd~~iwD-~Rk------~Gc~~~~-~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~  189 (825)
T KOG0267|consen  128 ---------ASGSTDTDLKIWD-IRK------KGCSHTY-KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLS  189 (825)
T ss_pred             ---------ccccccccceehh-hhc------cCceeee-cCCcceeEEEeecCCCceeeccCCcceeeeecccc-cccc
Confidence                     8999999999999 432      4456665 6788999999999999999999 899999999984 4443


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      .       .+..|...+..+.|+|.. .++++|+.|+++++||+++...+    ......            ...|.+++
T Consensus       190 ~-------ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I----~s~~~~------------~~~v~~~~  245 (825)
T KOG0267|consen  190 K-------EFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVI----SSGKPE------------TDGVRSLA  245 (825)
T ss_pred             c-------ccccccccccccccCchh-hhhccCCCCceeeeeccceeEEe----eccCCc------------cCCceeee
Confidence            2       378899999999999999 99999999999999999987554    122111            26799999


Q ss_pred             EccCCCEEEEeCC
Q 015363          349 FARNGRHILSRDY  361 (408)
Q Consensus       349 ~spdg~~l~s~~d  361 (408)
                      |+|+++.+++|..
T Consensus       246 fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  246 FNPDGKIVLSGEQ  258 (825)
T ss_pred             ecCCceeeecCch
Confidence            9999999999853

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=1e-22  Score=172.39  Aligned_cols=282  Identities=15%  Similarity=0.237  Sum_probs=205.1

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      .+.|..-|-++.+|...++++||+. |.|+|||+......    .+                +..          +..+.
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k----~P----------------vsq----------Ldcl~  463 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK----SP----------------VSQ----------LDCLN  463 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC----Cc----------------ccc----------ccccC
Confidence            4579899999999999999999986 58999999765321    11                111          11222


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      ....|.+...+|+  |..|++|+.-.++.|||+.........+....             .-.+.+++.+||.+..    
T Consensus       464 rdnyiRSckL~pd--grtLivGGeastlsiWDLAapTprikaeltss-------------apaCyALa~spDakvc----  524 (705)
T KOG0639|consen  464 RDNYIRSCKLLPD--GRTLIVGGEASTLSIWDLAAPTPRIKAELTSS-------------APACYALAISPDAKVC----  524 (705)
T ss_pred             cccceeeeEecCC--CceEEeccccceeeeeeccCCCcchhhhcCCc-------------chhhhhhhcCCcccee----
Confidence            2256888888654  88999999999999999987654332222211             1111257889999887    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              |++..||.|.+|| +.+.      ..++. +.+|...+.||.+++||..|-+| -|.+|+.||+++..+..+
T Consensus       525 --------FsccsdGnI~vwD-Lhnq------~~Vrq-fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq  588 (705)
T KOG0639|consen  525 --------FSCCSDGNIAVWD-LHNQ------TLVRQ-FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ  588 (705)
T ss_pred             --------eeeccCCcEEEEE-cccc------eeeec-ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh
Confidence                    9999999999999 6553      23334 48999999999999999999999 899999999997665543


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                               ......|.++.++|++ .+++.|-.++.+.+........     +.+..|            .+.|.++.|
T Consensus       589 ---------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-----yqlhlh------------eScVLSlKF  641 (705)
T KOG0639|consen  589 ---------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-----YQLHLH------------ESCVLSLKF  641 (705)
T ss_pred             ---------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-----eeeccc------------ccEEEEEEe
Confidence                     1235779999999999 9999999999998887765432     344444            478999999


Q ss_pred             ccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCe-ee---eeeceeeecC
Q 015363          350 ARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNY-FM---GLDNIHTLYE  408 (408)
Q Consensus       350 spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~d~~~~~~~  408 (408)
                      ++.|+++++. -|+.+..|.... |..+...+  +...-..|+...++ +|   .-|+--++||
T Consensus       642 a~cGkwfvStGkDnlLnawrtPy-GasiFqsk--E~SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  642 AYCGKWFVSTGKDNLLNAWRTPY-GASIFQSK--ESSSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             cccCceeeecCchhhhhhccCcc-ccceeecc--ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence            9999999986 589999999986 55444433  33333333444444 33   2366677776

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=3.2e-22  Score=176.23  Aligned_cols=327  Identities=13%  Similarity=0.087  Sum_probs=213.8

Q ss_pred             CcccceeeecccCcCcccceeeccceEEEEECCC-----------CCeEEEeecCCeEEEEEeCCCCCCCCccc-ccccc
Q 015363           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-----------GDHLATGDRGGRVVLFERTDTRDNGGQRR-DLEMM   80 (408)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-----------~~~l~sg~~dg~i~iw~~~~~~~~~~~~~-~~~~~   80 (408)
                      ..+.|+....-.-...-..+-|...|+.+.--|-           ..-+.|++.|++|++|+++........++ .+...
T Consensus       347 SlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~  426 (1080)
T KOG1408|consen  347 SLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN  426 (1080)
T ss_pred             eEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence            3466777765332334456789999999876651           12488999999999999987443211111 11111


Q ss_pred             cccccCC-CccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc
Q 015363           81 DYSMSRH-PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE  159 (408)
Q Consensus        81 ~~~~~~~-p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  159 (408)
                      -..+... .+...+..-...-.+-....++.-.-.+.+++.+|+  |++||+|..-|++++|++.+-+.....+.|..+ 
T Consensus       427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~--gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE-  503 (1080)
T KOG1408|consen  427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD--GQHLASGDRGGNLRVYDLQELEYTCFMEAHESE-  503 (1080)
T ss_pred             hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC--cceecccCccCceEEEEehhhhhhhheecccce-
Confidence            1111100 011111000000000111122244467999999755  999999999999999999988777666665433 


Q ss_pred             ccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEE
Q 015363          160 KAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSI  239 (408)
Q Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  239 (408)
                             |.       ++.++....         ...++++++.|+-|++|| +.+.-     ...++ +.+|...|+++
T Consensus       504 -------il-------cLeyS~p~~---------~~kLLASasrdRlIHV~D-v~rny-----~l~qt-ld~HSssITsv  553 (1080)
T KOG1408|consen  504 -------IL-------CLEYSFPVL---------TNKLLASASRDRLIHVYD-VKRNY-----DLVQT-LDGHSSSITSV  553 (1080)
T ss_pred             -------eE-------EEeecCchh---------hhHhhhhccCCceEEEEe-ccccc-----chhhh-hcccccceeEE
Confidence                   33       455543211         012359999999999999 54321     12223 48999999999


Q ss_pred             EeCCCC--CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363          240 SNNSDG--ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA  316 (408)
Q Consensus       240 ~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  316 (408)
                      .|...|  ..++++ .|..|.+--.+... .-.++.  ..+-.-....++.|+..|.. .++++++.|..|+|||+.+++
T Consensus       554 KFa~~gln~~MiscGADksimFr~~qk~~-~g~~f~--r~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgK  629 (1080)
T KOG1408|consen  554 KFACNGLNRKMISCGADKSIMFRVNQKAS-SGRLFP--RHTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGK  629 (1080)
T ss_pred             EEeecCCceEEEeccCchhhheehhcccc-Cceecc--ccccccccceEEEeeeCCCc-ceEEEEecccceEEEeccccc
Confidence            998877  566666 78877543322111 111110  01111124568899999999 999999999999999999998


Q ss_pred             eecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEE
Q 015363          317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVM  390 (408)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  390 (408)
                      ..    +.|++.         .+|.+....+...|.|-|||+. +|.++.++|+-+ |+++.++.||......+.
T Consensus       630 q~----k~FKgs---------~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s-gEcvA~m~GHsE~VTG~k  690 (1080)
T KOG1408|consen  630 QV----KSFKGS---------RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS-GECVAQMTGHSEAVTGVK  690 (1080)
T ss_pred             ee----eeeccc---------ccCCCceEEEEECCCccEEEEeecCCceEEEEecc-chhhhhhcCcchheeeee
Confidence            76    777765         3445778889999999999986 799999999998 899999999999877664

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=2.8e-22  Score=176.57  Aligned_cols=256  Identities=17%  Similarity=0.301  Sum_probs=188.3

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      +...-...|.|++.+|+|++||+|..-|+++||++...+                       +...+.+|+         
T Consensus       454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-----------------------~~~~~eAHe---------  501 (1080)
T KOG1408|consen  454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-----------------------YTCFMEAHE---------  501 (1080)
T ss_pred             hhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-----------------------hhhheeccc---------
Confidence            334566789999999999999999999999999987554                       456788898         


Q ss_pred             ccccceeEEEEee-cCCCcEEEEEeCCCeEEEEEcCCC-cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          110 EIEEKINKIRWCQ-SANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       110 ~~~~~v~~v~~~p-~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                         +.|.|+.|+. .-..++||++++|+.|.++|+... ...+.+..|.        ..|.       ++.|..+|...+
T Consensus       502 ---sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS--------ssIT-------svKFa~~gln~~  563 (1080)
T KOG1408|consen  502 ---SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS--------SSIT-------SVKFACNGLNRK  563 (1080)
T ss_pred             ---ceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccc--------ccee-------EEEEeecCCceE
Confidence               6699999972 222468999999999999999754 3344443332        1233       677777773222


Q ss_pred             cccccccCccccCCCCCceeeeceeeec-cccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTS-QETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                .++++.|+.|.+-. ... ......  +.... .-....++.+++.|...+++++ .|..|+|||++.++
T Consensus       564 ----------MiscGADksimFr~-~qk~~~g~~f--~r~t~-t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK  629 (1080)
T KOG1408|consen  564 ----------MISCGADKSIMFRV-NQKASSGRLF--PRHTQ-TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK  629 (1080)
T ss_pred             ----------EEeccCchhhheeh-hccccCceec--ccccc-ccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence                      27778887765421 110 011100  00000 1123568899999999999998 99999999999555


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      +. +.+    ..-.+|.+..-.+...|.| .++|+.+.|.++.++|+-+++.+    ..+.+|            +..|+
T Consensus       630 q~-k~F----Kgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEcv----A~m~GH------------sE~VT  687 (1080)
T KOG1408|consen  630 QV-KSF----KGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGECV----AQMTGH------------SEAVT  687 (1080)
T ss_pred             ee-eee----cccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchhh----hhhcCc------------chhee
Confidence            44 332    1245677788899999999 99999999999999999999655    555555            68899


Q ss_pred             EEEEccCCCEEEEe-CCCeEEEEECCC
Q 015363          346 DIKFARNGRHILSR-DYMTLKLWDINM  371 (408)
Q Consensus       346 ~~~~spdg~~l~s~-~d~~v~~wd~~~  371 (408)
                      .+.|++|-+.|++. +||.|.+|.+..
T Consensus       688 G~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  688 GVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eeeecccchhheeecCCceEEEEECch
Confidence            99999999999997 589999999974

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=5.3e-22  Score=174.21  Aligned_cols=235  Identities=12%  Similarity=0.254  Sum_probs=184.9

Q ss_pred             ceeeccceEE-EEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           31 EVQEVDIISA-IEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        31 ~~~h~~~V~~-~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ..+|.+.|.+ +++-+ ++-.|++|+.|.+|.+|...+..                       .+..+.+|+        
T Consensus        53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-----------------------P~~~LkgH~--------  101 (745)
T KOG0301|consen   53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE-----------------------PLYTLKGHK--------  101 (745)
T ss_pred             cccCcceeeccceeccccCcceEeecccceEEEEecCCCC-----------------------chhhhhccc--------
Confidence            3457888887 88876 44569999999999999988765                       356789999        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          +.|.++...  .++ .+++|+.|.++++|....  +......|        ...|+       ++...|++.+   
T Consensus       102 ----snVC~ls~~--~~~-~~iSgSWD~TakvW~~~~--l~~~l~gH--------~asVW-------Av~~l~e~~~---  154 (745)
T KOG0301|consen  102 ----SNVCSLSIG--EDG-TLISGSWDSTAKVWRIGE--LVYSLQGH--------TASVW-------AVASLPENTY---  154 (745)
T ss_pred             ----cceeeeecC--CcC-ceEecccccceEEecchh--hhcccCCc--------chhee-------eeeecCCCcE---
Confidence                789999873  445 489999999999997653  33334444        23466       5677777754   


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCcee
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF  268 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~  268 (408)
                                ++|+.|..|++|. -        .++.+++ .+|...|+.+++-+++.++-++.||.|++|++. ++...
T Consensus       155 ----------vTgsaDKtIklWk-~--------~~~l~tf-~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-ge~l~  213 (745)
T KOG0301|consen  155 ----------VTGSADKTIKLWK-G--------GTLLKTF-SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-GEVLL  213 (745)
T ss_pred             ----------EeccCcceeeecc-C--------Cchhhhh-ccchhheeeeEEecCCCeEeecCCceEEEEecc-Cceee
Confidence                      8999999999998 1        3445555 899999999999988776666699999999996 55444


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      .        +.+|...|++++..+++ ..+++++.|++++||+...   |.   +.+..+            ...|++++
T Consensus       214 ~--------~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e---~~---q~I~lP------------ttsiWsa~  266 (745)
T KOG0301|consen  214 E--------MHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKDE---CV---QVITLP------------TTSIWSAK  266 (745)
T ss_pred             e--------eeccceEEEEEEecCCC-CeEEEecCCceEEEeecCc---eE---EEEecC------------ccceEEEE
Confidence            3        67899999999977777 7999999999999999872   21   333333            24799999


Q ss_pred             EccCCCEEEEeCCCeEEEEECCC
Q 015363          349 FARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       349 ~spdg~~l~s~~d~~v~~wd~~~  371 (408)
                      +-++|..++.|+||.|++|..+.
T Consensus       267 ~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  267 VLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EeeCCCEEEeccCceEEEEEecc
Confidence            99999999999999999998874

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.9e-22  Score=154.46  Aligned_cols=224  Identities=15%  Similarity=0.213  Sum_probs=161.4

Q ss_pred             cceeeccceEEEEECC--CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           30 EEVQEVDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~--~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      +..+|.++|+.++|..  -|.+||++++||.|.||...+++.                     .....+..|.       
T Consensus        51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w---------------------~k~~e~~~h~-------  102 (299)
T KOG1332|consen   51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW---------------------TKAYEHAAHS-------  102 (299)
T ss_pred             EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch---------------------hhhhhhhhhc-------
Confidence            5668999999999976  699999999999999999887753                     2345567777       


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccC---C
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN---G  183 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~  183 (408)
                           ..|++|+|.|+.-|-.|++++.||.|.|.+.++. ..........++             ....+++|.|.   |
T Consensus       103 -----~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~-------------~GvnsVswapa~~~g  164 (299)
T KOG1332|consen  103 -----ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE-------------IGVNSVSWAPASAPG  164 (299)
T ss_pred             -----ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc-------------cccceeeecCcCCCc
Confidence                 7899999999887888999999999999998764 221111111111             11115677665   3


Q ss_pred             CeeecccccccC-ccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC----CEEEEe-cCCeEE
Q 015363          184 GCGERNFGCASN-DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG----ETFISA-DDLRIN  257 (408)
Q Consensus       184 ~~l~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----~~l~~~-~d~~i~  257 (408)
                      ..+.  .+.... .-+++|+.|..|++|+ ....    .....+. +.+|.+.|+.++|.|.-    .++|++ .||+|.
T Consensus       165 ~~~~--~~~~~~~krlvSgGcDn~VkiW~-~~~~----~w~~e~~-l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi  236 (299)
T KOG1332|consen  165 SLVD--QGPAAKVKRLVSGGCDNLVKIWK-FDSD----SWKLERT-LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI  236 (299)
T ss_pred             cccc--cCcccccceeeccCCccceeeee-cCCc----chhhhhh-hhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence            2210  001111 1269999999999999 4332    1222233 48999999999999974    578888 999999


Q ss_pred             EEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363          258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  313 (408)
                      ||-.+......+.     .-+......+..++|++.| ++|+.++.|..|.+|.-.
T Consensus       237 Iwt~~~e~e~wk~-----tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  237 IWTKDEEYEPWKK-----TLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEEecCccCcccc-----cccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeC
Confidence            9988743333222     1144456789999999999 999999999999999654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.90  E-value=4e-21  Score=150.13  Aligned_cols=224  Identities=16%  Similarity=0.228  Sum_probs=176.7

Q ss_pred             eeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCc
Q 015363           95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA  174 (408)
Q Consensus        95 ~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  174 (408)
                      .+++|+            .+++.|.++  .+|.+|++|+.|.+..+|-..+++.+.....|        .|.|+      
T Consensus         5 ~l~GHE------------RplTqiKyN--~eGDLlFscaKD~~~~vw~s~nGerlGty~GH--------tGavW------   56 (327)
T KOG0643|consen    5 LLQGHE------------RPLTQIKYN--REGDLLFSCAKDSTPTVWYSLNGERLGTYDGH--------TGAVW------   56 (327)
T ss_pred             ccccCc------------cccceEEec--CCCcEEEEecCCCCceEEEecCCceeeeecCC--------CceEE------
Confidence            478888            889999995  56889999999999999999999999988887        45677      


Q ss_pred             eeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c-
Q 015363          175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-  252 (408)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-  252 (408)
                       ++....+.+.+            ++|+.|.++++|| +..      ++++..+  .....|..+.|+++|++++.. + 
T Consensus        57 -~~Did~~s~~l------------iTGSAD~t~kLWD-v~t------Gk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~  114 (327)
T KOG0643|consen   57 -CCDIDWDSKHL------------ITGSADQTAKLWD-VET------GKQLATW--KTNSPVKRVDFSFGGNLILASTDK  114 (327)
T ss_pred             -EEEecCCccee------------eeccccceeEEEE-cCC------CcEEEEe--ecCCeeEEEeeccCCcEEEEEehh
Confidence             66777777777            9999999999999 543      3333332  334679999999999988765 2 


Q ss_pred             ----CCeEEEEeCCCCC------ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccc
Q 015363          253 ----DLRINLWNLEISN------QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS  322 (408)
Q Consensus       253 ----d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  322 (408)
                          .+.|.++|++...      .++..       +..+...++.+-|.|.+ ..|++|..||.|.+||++++....   
T Consensus       115 ~mg~~~~v~~fdi~~~~~~~~s~ep~~k-------I~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v---  183 (327)
T KOG0643|consen  115 QMGYTCFVSVFDIRDDSSDIDSEEPYLK-------IPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELV---  183 (327)
T ss_pred             hcCcceEEEEEEccCChhhhcccCceEE-------ecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceee---
Confidence                4689999998432      11221       45567889999999999 999999999999999999986431   


Q ss_pred             cccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEec
Q 015363          323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHS  392 (408)
Q Consensus       323 ~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~  392 (408)
                      ..-+.            |...|+++.++||..++++++ |.+-++||+.+ -.+++++....-+.....++
T Consensus       184 ~s~~~------------h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t-l~v~Kty~te~PvN~aaisP  241 (327)
T KOG0643|consen  184 DSDEE------------HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT-LEVLKTYTTERPVNTAAISP  241 (327)
T ss_pred             echhh------------hccccccccccCCcceEEecccCccceeeeccc-eeeEEEeeecccccceeccc
Confidence            33333            457899999999999999997 79999999998 68888887655444444333

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=3.6e-20  Score=161.51  Aligned_cols=255  Identities=7%  Similarity=0.076  Sum_probs=166.5

Q ss_pred             ccceEEEEECCCCCeE-EEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l-~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      ...+.+++|+|+++.+ ++++.++.|++||..+++.                       ...+..+.             
T Consensus        30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~-------------   73 (300)
T TIGR03866        30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-----------------------IGTLPSGP-------------   73 (300)
T ss_pred             CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----------------------EEeccCCC-------------
Confidence            3447789999999876 6677889999999876642                       12233222             


Q ss_pred             ceeEEEEeecCCCcEEEEE-eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          114 KINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      .+..++|+|+  ++.++++ ..|+.+++||+.+.+....+.....                +..+.++|+|+.+      
T Consensus        74 ~~~~~~~~~~--g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~dg~~l------  129 (300)
T TIGR03866        74 DPELFALHPN--GKILYIANEDDNLVTVIDIETRKVLAEIPVGVE----------------PEGMAVSPDGKIV------  129 (300)
T ss_pred             CccEEEECCC--CCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC----------------cceEEECCCCCEE------
Confidence            2556788654  6666554 5789999999998776554432211                1158899999987      


Q ss_pred             ccCccccCCCCCc-eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE-e-cCCeEEEEeCCCCCceee
Q 015363          193 ASNDSSFPPGGVS-SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       193 ~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~  269 (408)
                            +++..++ .+..|| ....      ......  .....+..++|+|+++.|+. + .++.|.+||+++. +...
T Consensus       130 ------~~~~~~~~~~~~~d-~~~~------~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~  193 (300)
T TIGR03866       130 ------VNTSETTNMAHFID-TKTY------EIVDNV--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIK  193 (300)
T ss_pred             ------EEEecCCCeEEEEe-CCCC------eEEEEE--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeee
Confidence                  5555543 456667 3221      111111  11234567899999998865 4 6999999999844 3333


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCce-EEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNM-LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      .+................++|+|++ ++ +++.+.++.|.+||+++++..    ..+...             ..+.+++
T Consensus       194 ~~~~~~~~~~~~~~~~~~i~~s~dg-~~~~~~~~~~~~i~v~d~~~~~~~----~~~~~~-------------~~~~~~~  255 (300)
T TIGR03866       194 KITFEIPGVHPEAVQPVGIKLTKDG-KTAFVALGPANRVAVVDAKTYEVL----DYLLVG-------------QRVWQLA  255 (300)
T ss_pred             eeeecccccccccCCccceEECCCC-CEEEEEcCCCCeEEEEECCCCcEE----EEEEeC-------------CCcceEE
Confidence            3221110011111223568999999 55 444556778999999887543    222111             3588999


Q ss_pred             EccCCCEEEEe-C-CCeEEEEECCCCCCceeeeeeccc
Q 015363          349 FARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       349 ~spdg~~l~s~-~-d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      |+|+|++|+++ . ++.|++||+++ ++++..++....
T Consensus       256 ~~~~g~~l~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~  292 (300)
T TIGR03866       256 FTPDEKYLLTTNGVSNDVSVIDVAA-LKVIKSIKVGRL  292 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCC-CcEEEEEEcccc
Confidence            99999999886 4 59999999997 788888876543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=7.6e-22  Score=170.46  Aligned_cols=284  Identities=18%  Similarity=0.239  Sum_probs=187.9

Q ss_pred             ecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCC
Q 015363           21 QVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE  100 (408)
Q Consensus        21 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~  100 (408)
                      +.|.........+|++.|.||...|.|.+||+|+.||+|+||.+.++.+.                       ..++   
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-----------------------r~~~---  439 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-----------------------RTVQ---  439 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-----------------------EEEe---
Confidence            33555555567789999999999999999999999999999999998752                       2221   


Q ss_pred             cccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE------e-ccC--CCC----cccC-----
Q 015363          101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV------F-DWN--VHP----EKAA-----  162 (408)
Q Consensus       101 ~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~------~-~~~--~~~----~~~~-----  162 (408)
                                ..+.|.||+|+|.++-..||++-... +.+-+..-|..+..      + ...  ..+    ....     
T Consensus       440 ----------~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~  508 (733)
T KOG0650|consen  440 ----------FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLD  508 (733)
T ss_pred             ----------ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhh
Confidence                      11459999999987765565554444 66655443311100      0 000  000    0000     


Q ss_pred             --CCC-CeEeec-CCceeeEEccCCCeeecccccc---------------------------------cCccccCCCCCc
Q 015363          163 --GNG-PIFGSH-VSAIPKSYMANGGCGERNFGCA---------------------------------SNDSSFPPGGVS  205 (408)
Q Consensus       163 --~~~-~v~~~~-~~~~~~~~~~~~~~l~~~~~~~---------------------------------~~~~~~~~~~~~  205 (408)
                        ..+ .+.... .....+.|+..|.++.+.....                                 ...+++ .....
T Consensus       509 e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lf-VaTq~  587 (733)
T KOG0650|consen  509 ELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLF-VATQR  587 (733)
T ss_pred             hhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEE-EEecc
Confidence              001 111111 2334678888888876543311                                 011111 23345


Q ss_pred             eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCC
Q 015363          206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV  284 (408)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  284 (408)
                      .|++|| +.....      .+. +......|..++.+|.|..|+.| .|+.+..||+....+.++.       +.-|...
T Consensus       588 ~vRiYd-L~kqel------vKk-L~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~-------lr~H~~a  652 (733)
T KOG0650|consen  588 SVRIYD-LSKQEL------VKK-LLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKT-------LRLHEKA  652 (733)
T ss_pred             ceEEEe-hhHHHH------HHH-HhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHH-------hhhhhhh
Confidence            667777 332211      122 23445779999999999988888 8999999999977667654       6779999


Q ss_pred             eEEEEEcCCCCceEEEEeCCCeEEEEE------cCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363          285 ITSAEFHPTHCNMLAYSSSKGSIRLID------MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  358 (408)
Q Consensus       285 v~~~~~~p~~~~~l~s~~~dg~i~iwd------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s  358 (408)
                      +++++|++.- .+|++|+.||++.|+-      +..+-+ .-|++.+.+|...        ....|.++.|+|.-.+|++
T Consensus       653 vr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~qnpl-iVPlK~L~gH~~~--------~~~gVLd~~wHP~qpWLfs  722 (733)
T KOG0650|consen  653 VRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQNPL-IVPLKRLRGHEKT--------NDLGVLDTIWHPRQPWLFS  722 (733)
T ss_pred             hhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhcCCc-eEeeeeccCceee--------cccceEeecccCCCceEEe
Confidence            9999999999 8999999999999984      323222 3567788888421        1235889999999999998


Q ss_pred             e-CCCeEEEE
Q 015363          359 R-DYMTLKLW  367 (408)
Q Consensus       359 ~-~d~~v~~w  367 (408)
                      + .||+|++|
T Consensus       723 AGAd~tirlf  732 (733)
T KOG0650|consen  723 AGADGTIRLF  732 (733)
T ss_pred             cCCCceEEee
Confidence            7 58999998

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=2.1e-20  Score=150.07  Aligned_cols=285  Identities=14%  Similarity=0.194  Sum_probs=188.5

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      +-...+.|+|||.-|++-+.|..+.+|++...........     ....+.++.+++   ..+              ..|
T Consensus        50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~-----~~~~~~~~~~r~---~eg--------------~tv  107 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADG-----PLNFSKHLSYRY---QEG--------------ETV  107 (406)
T ss_pred             hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCC-----ccccccceeEEe---ccC--------------CEE
Confidence            3456789999999999999999999999754321000000     000011111111   111              447


Q ss_pred             eEEEEee-----cCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          116 NKIRWCQ-----SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       116 ~~v~~~p-----~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      ..-+|-+     .|+..++|+.++|.-|++||.-+++.......-.+...      +    ....+++|+|||..|    
T Consensus       108 ydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de------~----taAhsL~Fs~DGeql----  173 (406)
T KOG2919|consen  108 YDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDE------Y----TAAHSLQFSPDGEQL----  173 (406)
T ss_pred             EEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHh------h----hhheeEEecCCCCeE----
Confidence            7777864     24466899999999999999999987765544322210      0    011279999999985    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccc-cccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCce
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLV-AGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                              + ++..+.|+++| ..+...... ...+..-..+..+-+.+++|+|... .++.| ...++-||.-. ...+
T Consensus       174 --------f-aGykrcirvFd-t~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~p  242 (406)
T KOG2919|consen  174 --------F-AGYKRCIRVFD-TSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRRP  242 (406)
T ss_pred             --------e-ecccceEEEee-ccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-CCCc
Confidence                    4 46778999999 533221110 0000000134457789999999875 78888 77888888877 3444


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      +.+       +.+|.+.|+.++|.++| +.|.+|+. |..|..||+|.-.   .++..+..|...        -...| -
T Consensus       243 l~l-------lggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~---~pv~~L~rhv~~--------TNQRI-~  302 (406)
T KOG2919|consen  243 LQL-------LGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSR---DPVYALERHVGD--------TNQRI-L  302 (406)
T ss_pred             eee-------ecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhcc---chhhhhhhhccC--------ccceE-E
Confidence            443       57899999999999999 77777776 7899999999764   445667666321        01222 2


Q ss_pred             EEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccc
Q 015363          347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP  387 (408)
Q Consensus       347 ~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~  387 (408)
                      ....|+|++|++|+ ||.|++||++..+..+..+..|....+
T Consensus       303 FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vN  344 (406)
T KOG2919|consen  303 FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVN  344 (406)
T ss_pred             EecCCCCceeeccCCCccEEEEecCCCCCccccccccccccc
Confidence            45578999999995 799999999987777777766655443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=2.6e-21  Score=162.03  Aligned_cols=275  Identities=15%  Similarity=0.176  Sum_probs=190.3

Q ss_pred             eeeccceEEEEECCCC--CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           32 VQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~--~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .-+.+.|++++|+|..  +++|+|+..|+|-+||+.+.+                   |++.-+..+..|.         
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-------------------~d~d~v~~f~~hs---------  234 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-------------------KDKDGVYLFTPHS---------  234 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC-------------------CccCceEEeccCC---------
Confidence            4588999999999963  589999999999999997443                   3444566788888         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         .+|.++.|+|... ..+++.+.||+|++-|+++.....++......      ..+.       .+.++.+...+   
T Consensus       235 ---~~Vs~l~F~P~n~-s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~------~~fs-------~~d~~~e~~~v---  294 (498)
T KOG4328|consen  235 ---GPVSGLKFSPANT-SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN------IWFS-------SLDFSAESRSV---  294 (498)
T ss_pred             ---ccccceEecCCCh-hheeeeccCceeeeeeecchhhHHHhhcCccc------eeee-------eccccCCCccE---
Confidence               8899999998644 58999999999999999987654444432111      0111       33444444443   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCce
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                               +.++.-|.+.+|| .+......     .. +.-|...|++++++|... +||++ -|++++|||++.....
T Consensus       295 ---------l~~~~~G~f~~iD-~R~~~s~~-----~~-~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K  358 (498)
T KOG4328|consen  295 ---------LFGDNVGNFNVID-LRTDGSEY-----EN-LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK  358 (498)
T ss_pred             ---------EEeecccceEEEE-eecCCccc-----hh-hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC
Confidence                     6666667888888 43322111     11 356777899999999875 56677 8999999999854332


Q ss_pred             ee-EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          268 FN-IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       268 ~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      .. ++     ....|...|.+..|||++ -.|++.+.|..|+|||..--.....+..++. |..     ....|. ....
T Consensus       359 ~sp~l-----st~~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~-----~t~Rwl-T~fK  425 (498)
T KOG4328|consen  359 ASPFL-----STLPHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN-----RTGRWL-TPFK  425 (498)
T ss_pred             CCcce-----ecccccceeeeeEEcCCC-CceEeeccCCceEEeecccccccCCccceee-ccC-----cccccc-cchh
Confidence            21 11     245689999999999999 5599999999999999852111112222222 211     111222 2445


Q ss_pred             EEEccCCCEEEEeCC-CeEEEEECCCCCCceeeeeeccc
Q 015363          347 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       347 ~~~spdg~~l~s~~d-~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      ..|.|+..+++.|.. ..|-++|-.. ++.+..+.....
T Consensus       426 A~W~P~~~li~vg~~~r~IDv~~~~~-~q~v~el~~P~~  463 (498)
T KOG4328|consen  426 AAWDPDYNLIVVGRYPRPIDVFDGNG-GQMVCELHDPES  463 (498)
T ss_pred             heeCCCccEEEEeccCcceeEEcCCC-CEEeeeccCccc
Confidence            689999999999975 8899999986 676777655444

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=4.1e-20  Score=148.15  Aligned_cols=215  Identities=19%  Similarity=0.264  Sum_probs=158.1

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..|+++.|+  .+|.++++++.|.++++||..+++.......+...        +-       .+.|......+      
T Consensus        15 ~~i~sl~fs--~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG--------~~-------~~~Fth~~~~~------   71 (311)
T KOG1446|consen   15 GKINSLDFS--DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG--------VD-------LACFTHHSNTV------   71 (311)
T ss_pred             CceeEEEec--CCCCEEEEecCCCeEEEEEcCCCceeeEeeccccc--------cc-------EEEEecCCceE------
Confidence            669999996  45889999999999999999999888776654321        00       23444333332      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                          +..+.-.|.+|+..+ +.      ..+.++.+ .+|...|++++.+|-+..++++ .|++|++||++. .++.-.+
T Consensus        72 ----i~sStk~d~tIryLs-l~------dNkylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~-~~cqg~l  138 (311)
T KOG1446|consen   72 ----IHSSTKEDDTIRYLS-LH------DNKYLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV-KKCQGLL  138 (311)
T ss_pred             ----EEccCCCCCceEEEE-ee------cCceEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEecC-CCCceEE
Confidence                112334477888766 32      24566665 9999999999999999999999 899999999994 4443332


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                      .         ...-..++|+|+| .++|++.....|+|||+|....  .|..++.-...         -....+.+.|||
T Consensus       139 ~---------~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i~~~---------~~~ew~~l~FS~  197 (311)
T KOG1446|consen  139 N---------LSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDK--GPFTTFSITDN---------DEAEWTDLEFSP  197 (311)
T ss_pred             e---------cCCCcceeECCCC-cEEEEecCCCeEEEEEecccCC--CCceeEccCCC---------CccceeeeEEcC
Confidence            1         1222468999999 9999998888999999997633  33344433311         125689999999


Q ss_pred             CCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc
Q 015363          352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       352 dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                      ||++|+.+. .+.+++.|.-. |..+.++.++...
T Consensus       198 dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~  231 (311)
T KOG1446|consen  198 DGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNA  231 (311)
T ss_pred             CCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCC
Confidence            999998886 48999999987 8999999988775

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=1.2e-21  Score=165.85  Aligned_cols=257  Identities=12%  Similarity=0.202  Sum_probs=195.0

Q ss_pred             cccceeeecccCcCcccc---eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcc
Q 015363           14 PLEWKFSQVFGERTAGEE---VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (408)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~---~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~   90 (408)
                      -..|++.+. +.+.+...   ..-.+-|.++.+.|||+.|++|+.-.++.|||+.....                     
T Consensus       442 VKVWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp---------------------  499 (705)
T KOG0639|consen  442 VKVWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP---------------------  499 (705)
T ss_pred             EEEeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc---------------------
Confidence            456888876 33322221   23456789999999999999999999999999876542                     


Q ss_pred             ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEee
Q 015363           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (408)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  170 (408)
                      +....+..-.            .....++.+|+  .+..+++..||.|.|||+.+...++.++.+.+.        .   
T Consensus       500 rikaeltssa------------paCyALa~spD--akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG--------a---  554 (705)
T KOG0639|consen  500 RIKAELTSSA------------PACYALAISPD--AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG--------A---  554 (705)
T ss_pred             chhhhcCCcc------------hhhhhhhcCCc--cceeeeeccCCcEEEEEcccceeeecccCCCCC--------c---
Confidence            1222232222            23566777655  668889999999999999999888888777543        1   


Q ss_pred             cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE
Q 015363          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS  250 (408)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~  250 (408)
                          .++..+++|..|            .+|+-|.+|+.|| ++......        .......|.++..+|++.+|+.
T Consensus       555 ----scIdis~dGtkl------------WTGGlDntvRcWD-lregrqlq--------qhdF~SQIfSLg~cP~~dWlav  609 (705)
T KOG0639|consen  555 ----SCIDISKDGTKL------------WTGGLDNTVRCWD-LREGRQLQ--------QHDFSSQIFSLGYCPTGDWLAV  609 (705)
T ss_pred             ----eeEEecCCCcee------------ecCCCccceeehh-hhhhhhhh--------hhhhhhhheecccCCCccceee
Confidence                168899999998            9999999999999 43321100        0223467999999999999999


Q ss_pred             e-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccccc
Q 015363          251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE  329 (408)
Q Consensus       251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  329 (408)
                      | .++.+.+...... ...+        +.-|...|.++.|.+.| +++++.+.|..+..|.+.-|..      .|+..+
T Consensus       610 GMens~vevlh~skp-~kyq--------lhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGas------iFqskE  673 (705)
T KOG0639|consen  610 GMENSNVEVLHTSKP-EKYQ--------LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS------IFQSKE  673 (705)
T ss_pred             ecccCcEEEEecCCc-ccee--------ecccccEEEEEEecccC-ceeeecCchhhhhhccCccccc------eeeccc
Confidence            9 8999999888733 3333        45688999999999999 9999999999999999988863      344443


Q ss_pred             CCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363          330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       330 ~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~  369 (408)
                                 .+.|.++.+|.|.++|++|+ |..-.+|.+
T Consensus       674 -----------~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  674 -----------SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             -----------cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence                       37899999999999999996 677777764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=4.9e-21  Score=159.79  Aligned_cols=256  Identities=11%  Similarity=0.152  Sum_probs=174.6

Q ss_pred             CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCC
Q 015363           47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS  126 (408)
Q Consensus        47 ~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~  126 (408)
                      |+|+|.|+.|..|.|||+.-....-++...-...+. ..- ...+.-...++|+            +.|.++.|+.. ..
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk-~~~-k~~k~~~~~~gHT------------davl~Ls~n~~-~~  256 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASK-KKK-KKGKRSNSASGHT------------DAVLALSWNRN-FR  256 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhh-hhh-hhcccccccccch------------HHHHHHHhccc-cc
Confidence            789999999999999998643321110000000000 000 0000001233455            78999999743 34


Q ss_pred             cEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCce
Q 015363          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS  206 (408)
Q Consensus       127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  206 (408)
                      ..||+|+.|.+|++||+.++++...+..+..        .|.       ++.|+|.....           +++|+.|++
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k--------~Vq-------~l~wh~~~p~~-----------LLsGs~D~~  310 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGK--------KVQ-------TLEWHPYEPSV-----------LLSGSYDGT  310 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCC--------cee-------EEEecCCCceE-----------EEeccccce
Confidence            5899999999999999999999988876543        344       68888875543           599999999


Q ss_pred             eeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCC
Q 015363          207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV  284 (408)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  284 (408)
                      |.+.| ++...  ..+...     ...+.|-.++|+|.. ..++++ +||+|+-+|++..++++..       +..|...
T Consensus       311 V~l~D-~R~~~--~s~~~w-----k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt-------~~AHd~~  375 (463)
T KOG0270|consen  311 VALKD-CRDPS--NSGKEW-----KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT-------LKAHDDE  375 (463)
T ss_pred             EEeee-ccCcc--ccCceE-----EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE-------EEeccCC
Confidence            99999 55311  111111     223678899999876 455566 9999999999988776654       6789999


Q ss_pred             eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCE-EEEeCC-C
Q 015363          285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRDY-M  362 (408)
Q Consensus       285 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~-l~s~~d-~  362 (408)
                      |.++++++.-+.++++++.|+.|++|++.....     +....|...         .+...|.++.|+-.+ |+.|+. +
T Consensus       376 ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-----~~v~~~~~~---------~~rl~c~~~~~~~a~~la~GG~k~  441 (463)
T KOG0270|consen  376 ISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-----KSVKEHSFK---------LGRLHCFALDPDVAFTLAFGGEKA  441 (463)
T ss_pred             cceEEecCCCCcceeeccccceEEEEeecCCCC-----ccccccccc---------ccceeecccCCCcceEEEecCccc
Confidence            999999999989999999999999999875432     222222110         134667778887654 445554 7


Q ss_pred             eEEEEECCCC
Q 015363          363 TLKLWDINMD  372 (408)
Q Consensus       363 ~v~~wd~~~~  372 (408)
                      .+++||+.+.
T Consensus       442 ~~~vwd~~~~  451 (463)
T KOG0270|consen  442 VLRVWDIFTN  451 (463)
T ss_pred             eEEEeecccC
Confidence            8999999873

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=4.6e-20  Score=147.60  Aligned_cols=255  Identities=16%  Similarity=0.232  Sum_probs=181.4

Q ss_pred             eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcE
Q 015363           49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL  128 (408)
Q Consensus        49 ~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~  128 (408)
                      .|++|++...|.=+++.-..           ..+.-+..|++..+-.+++|.            ++|++++.  +  +.+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~-----------~~~~~s~~~~l~~lF~~~aH~------------~sitavAV--s--~~~   55 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEP-----------KGCTDSVKPTLKPLFAFSAHA------------GSITALAV--S--GPY   55 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCc-----------cccccccceeeeccccccccc------------cceeEEEe--c--cee
Confidence            37788888777666654322           122223445555566778888            78999998  4  679


Q ss_pred             EEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceee
Q 015363          129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR  208 (408)
Q Consensus       129 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  208 (408)
                      +|+|+.|-+|+|||+........+..+.        +.+.       ++.|.++-..          ..+++++.||.|.
T Consensus        56 ~aSGssDetI~IYDm~k~~qlg~ll~Ha--------gsit-------aL~F~~~~S~----------shLlS~sdDG~i~  110 (362)
T KOG0294|consen   56 VASGSSDETIHIYDMRKRKQLGILLSHA--------GSIT-------ALKFYPPLSK----------SHLLSGSDDGHII  110 (362)
T ss_pred             EeccCCCCcEEEEeccchhhhcceeccc--------cceE-------EEEecCCcch----------hheeeecCCCcEE
Confidence            9999999999999999876555444432        2233       4556555430          1249999999999


Q ss_pred             eceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEE
Q 015363          209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS  287 (408)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  287 (408)
                      +|+ +      ....+...+ .+|...|+.++.+|.+++.++. .|+.++.||+-.++..+.. +     +   ....+.
T Consensus       111 iw~-~------~~W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~-~-----L---~~~at~  173 (362)
T KOG0294|consen  111 IWR-V------GSWELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL-N-----L---KNKATL  173 (362)
T ss_pred             EEE-c------CCeEEeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee-c-----c---CCccee
Confidence            999 3      334555665 8999999999999999887776 9999999999866554322 1     1   222355


Q ss_pred             EEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEE
Q 015363          288 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKL  366 (408)
Q Consensus       288 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~  366 (408)
                      +.|+|.| .+|+.+..+ .|-+|.+.+.+..    ..+...             ..+.++.|.. +..|++| +++.|.+
T Consensus       174 v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~~-------------~r~l~~~~l~-~~~L~vG~d~~~i~~  233 (362)
T KOG0294|consen  174 VSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIENP-------------KRILCATFLD-GSELLVGGDNEWISL  233 (362)
T ss_pred             eEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhcc-------------ccceeeeecC-CceEEEecCCceEEE
Confidence            9999999 777776654 6899999887543    333322             3578888874 5556665 6699999


Q ss_pred             EECCCCCCceeeeeecccccceEEecC
Q 015363          367 WDINMDSGPVATFQVHEHLRPKVMHSS  393 (408)
Q Consensus       367 wd~~~~~~~~~~~~~~~~~~~~~~~~~  393 (408)
                      ||.+. ..++..+.+|+.....+..+-
T Consensus       234 ~D~ds-~~~~~~~~AH~~RVK~i~~~~  259 (362)
T KOG0294|consen  234 KDTDS-DTPLTEFLAHENRVKDIASYT  259 (362)
T ss_pred             eccCC-CccceeeecchhheeeeEEEe
Confidence            99997 799999999998877776433

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=3.1e-21  Score=157.77  Aligned_cols=220  Identities=18%  Similarity=0.288  Sum_probs=154.9

Q ss_pred             eeeccceEEEEECCC--CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           32 VQEVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      -.|...=++|+|||-  | .|++|..-+.|++|...++...  .                  -...|.+|+         
T Consensus       208 ~ghk~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~--v------------------d~~Pf~gH~---------  257 (440)
T KOG0302|consen  208 NGHKGEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWK--V------------------DQRPFTGHT---------  257 (440)
T ss_pred             cccCccceeeeccccccc-ccccCccccceEeeeeccCcee--e------------------cCccccccc---------
Confidence            357777889999994  4 4889988899999999887642  0                  012467788         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|-.++|+|+.++ .|++|+.||+|+|||++.+.....+                                     
T Consensus       258 ---~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~-------------------------------------  296 (440)
T KOG0302|consen  258 ---KSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAV-------------------------------------  296 (440)
T ss_pred             ---cchhhhccCCccCc-eEEeeecCceEEEEEecCCCcccee-------------------------------------
Confidence               77999999998775 8999999999999999987432210                                     


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                                             .               ..+|...|+.|.|+..-.+||+| +||+++|||++.-+...
T Consensus       297 -----------------------~---------------~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~  338 (440)
T KOG0302|consen  297 -----------------------S---------------TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ  338 (440)
T ss_pred             -----------------------E---------------eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC
Confidence                                   0               25777889999999998899999 99999999998543321


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccc-ccccccccCCCCccccccc--cceeE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEI--IASIS  345 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h--~~~i~  345 (408)
                      -+     ..+.-|..+|+++.|+|.....|++++.|.+|.|||+....-.... .....+ -..-+.+.+.-|  +..|.
T Consensus       339 pV-----A~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~-L~dlPpQLLFVHqGQke~K  412 (440)
T KOG0302|consen  339 PV-----ATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG-LQDLPPQLLFVHQGQKEVK  412 (440)
T ss_pred             cc-----eeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc-hhcCCceeEEEecchhHhh
Confidence            11     2367899999999999988789999999999999999754321000 000000 000011222222  24688


Q ss_pred             EEEEccCCC-EEEEe-CCCeEEEE
Q 015363          346 DIKFARNGR-HILSR-DYMTLKLW  367 (408)
Q Consensus       346 ~~~~spdg~-~l~s~-~d~~v~~w  367 (408)
                      .+.|++.-. +|++. -| -+.||
T Consensus       413 evhWH~QiPG~lvsTa~d-GfnVf  435 (440)
T KOG0302|consen  413 EVHWHRQIPGLLVSTAID-GFNVF  435 (440)
T ss_pred             hheeccCCCCeEEEeccc-ceeEE
Confidence            999998533 45544 45 34444

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=7e-21  Score=152.50  Aligned_cols=273  Identities=11%  Similarity=0.116  Sum_probs=167.2

Q ss_pred             eeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-----EEeccCCCC--cccCCCCC
Q 015363           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-----KVFDWNVHP--EKAAGNGP  166 (408)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~--~~~~~~~~  166 (408)
                      ..+++|.            ..|++++|+  .||++|++++.|++|++|+++..+..     +......++  ..+.++..
T Consensus        80 ~~LKgH~------------~~vt~~~Fs--SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~  145 (420)
T KOG2096|consen   80 SVLKGHK------------KEVTDVAFS--SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK  145 (420)
T ss_pred             hhhhccC------------CceeeeEEc--CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc
Confidence            4578888            679999995  66999999999999999999853211     110000111  12222221


Q ss_pred             eEeecCCceeeEEccCCCeeecc---------------------------------cccccCccccCCCCCceeeeceee
Q 015363          167 IFGSHVSAIPKSYMANGGCGERN---------------------------------FGCASNDSSFPPGGVSSLRLPVVV  213 (408)
Q Consensus       167 v~~~~~~~~~~~~~~~~~~l~~~---------------------------------~~~~~~~~~~~~~~~~~i~~~~~~  213 (408)
                      -+        +.+...|..|...                                 .-..+..++++++.|..|.+|+ +
T Consensus       146 s~--------vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~-l  216 (420)
T KOG2096|consen  146 SV--------VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWD-L  216 (420)
T ss_pred             eE--------EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEe-c
Confidence            11        1111112111100                                 0011234578999999999999 5


Q ss_pred             eccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCC--CceeeEeecCCCcccCCcCCeEEEEE
Q 015363          214 TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS--NQSFNIVDVKPANMEDLTEVITSAEF  290 (408)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~  290 (408)
                      .+..       +..+ ......-+..+++|+|++++++ ..--|++|..--.  +...+.  .+..++.+|...|..++|
T Consensus       217 kGq~-------L~~i-dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev--~rvf~LkGH~saV~~~aF  286 (420)
T KOG2096|consen  217 KGQL-------LQSI-DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEV--KRVFSLKGHQSAVLAAAF  286 (420)
T ss_pred             CCce-------eeee-ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhh--hhhheeccchhheeeeee
Confidence            4322       1221 2222344567899999999987 7778999986422  111111  112458999999999999


Q ss_pred             cCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECC
Q 015363          291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN  370 (408)
Q Consensus       291 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~  370 (408)
                      +|+. ..+++.+.||+++|||+.-.....+..+.++...     ..+....+....+..+|+|+.||.+....++++..+
T Consensus       287 sn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~-----~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se  360 (420)
T KOG2096|consen  287 SNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS-----APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASE  360 (420)
T ss_pred             CCCc-ceeEEEecCCcEEEeeccceEecCCCchHhhcCC-----cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcc
Confidence            9999 8999999999999999874322211112222110     011112234458999999999999877789999999


Q ss_pred             CCCCceeee-eecccccceEEecCCCeee--eeeceeee
Q 015363          371 MDSGPVATF-QVHEHLRPKVMHSSKNYFM--GLDNIHTL  406 (408)
Q Consensus       371 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~d~~~~~  406 (408)
                      . ++....+ ..|.....++....++..+  +.||-.++
T Consensus       361 ~-g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv  398 (420)
T KOG2096|consen  361 D-GKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRV  398 (420)
T ss_pred             c-CccchhHHHhhcCceeeEEecCCCcEEeeecceeeee
Confidence            7 5555544 4566666666655544433  33554443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.87  E-value=1.1e-19  Score=163.03  Aligned_cols=296  Identities=17%  Similarity=0.249  Sum_probs=196.6

Q ss_pred             CcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (408)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   92 (408)
                      ....|++..-   ...-+...+.+.|+++.=+|--..+|.|..+|+|.|++++.++.                       
T Consensus       183 ~lql~Nvrt~---K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki-----------------------  236 (910)
T KOG1539|consen  183 RLQLWNVRTG---KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI-----------------------  236 (910)
T ss_pred             cEEEEEeccC---cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE-----------------------
Confidence            4556777651   22224456778999999999999999999999999999988763                       


Q ss_pred             eeeeccCCcccccccccccccceeEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEEEEec-cCCC---CcccCCCCCe
Q 015363           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFD-WNVH---PEKAAGNGPI  167 (408)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~---~~~~~~~~~v  167 (408)
                      +..|+...            ++|++++|.  .||. .+++|+..|.+.+||++..+...+.. .+..   ...+.+..+|
T Consensus       237 l~sFk~d~------------g~VtslSFr--tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epV  302 (910)
T KOG1539|consen  237 LMSFKQDW------------GRVTSLSFR--TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPV  302 (910)
T ss_pred             EEEEEccc------------cceeEEEec--cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCce
Confidence            34555444            779999995  3455 55666778999999999877665544 2211   1223333333


Q ss_pred             Eeec--CCceeeEE--ccCC--Ceeecccccc------------------------------------------------
Q 015363          168 FGSH--VSAIPKSY--MANG--GCGERNFGCA------------------------------------------------  193 (408)
Q Consensus       168 ~~~~--~~~~~~~~--~~~~--~~l~~~~~~~------------------------------------------------  193 (408)
                      ....  +-...++.  ++||  ++++.-.|++                                                
T Consensus       303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~  382 (910)
T KOG1539|consen  303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA  382 (910)
T ss_pred             EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence            3322  11111111  2222  2222211111                                                


Q ss_pred             ----------------------------------------------------------------------------cCcc
Q 015363          194 ----------------------------------------------------------------------------SNDS  197 (408)
Q Consensus       194 ----------------------------------------------------------------------------~~~~  197 (408)
                                                                                                  ...|
T Consensus       383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF  462 (910)
T KOG1539|consen  383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNF  462 (910)
T ss_pred             ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCce
Confidence                                                                                        0111


Q ss_pred             ccCCCCCceeeeceeeeccccccccccceee--ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecC
Q 015363          198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK  274 (408)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  274 (408)
                      .+.|...|.|.+|+ +.      .+..+..+  ...|..+|++++.+..++.++++ .+|.+++||... +.....++  
T Consensus       463 ~~IG~S~G~Id~fN-mQ------SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~--  532 (910)
T KOG1539|consen  463 VFIGYSKGTIDRFN-MQ------SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLR--  532 (910)
T ss_pred             EEEeccCCeEEEEE-cc------cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC-cceeeeec--
Confidence            22233333333333 11      11111222  25788999999999999999998 999999999983 33333221  


Q ss_pred             CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363          275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       275 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                            -...+.++..+... .++|.+..|-.|+++|+.+.+.+    +.|.+|            +..|++++|||||+
T Consensus       533 ------l~~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~kvv----R~f~gh------------~nritd~~FS~Dgr  589 (910)
T KOG1539|consen  533 ------LGSSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRKVV----REFWGH------------GNRITDMTFSPDGR  589 (910)
T ss_pred             ------cCCCcceeeeeehh-hhhhhhcCceeEEEEEchhhhhh----HHhhcc------------ccceeeeEeCCCCc
Confidence                  24557788888888 89999999999999999988665    777777            58899999999999


Q ss_pred             EEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363          355 HILSRD-YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       355 ~l~s~~-d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      +|++++ |++|++||+.+ +.++..+...
T Consensus       590 WlisasmD~tIr~wDlpt-~~lID~~~vd  617 (910)
T KOG1539|consen  590 WLISASMDSTIRTWDLPT-GTLIDGLLVD  617 (910)
T ss_pred             EEEEeecCCcEEEEeccC-cceeeeEecC
Confidence            999997 79999999998 6777766543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=1.5e-20  Score=149.09  Aligned_cols=224  Identities=14%  Similarity=0.213  Sum_probs=154.0

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE----EEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK----KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      +.|+++..-+. .|.++++|+.||.|.+||+++..-.    .+.+.........+++.-++.   ...+++.-|...+  
T Consensus        44 GsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~i---ss~~WyP~DtGmF--  117 (397)
T KOG4283|consen   44 GSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAI---SSAIWYPIDTGMF--  117 (397)
T ss_pred             Cccceeeeccc-cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeee---eeeEEeeecCcee--
Confidence            67999998654 4789999999999999999864310    000000000001112211110   0123444444443  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC---CCEEEEe-cCCeEEEEeCCCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEIS  264 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~-~d~~i~iwd~~~~  264 (408)
                                .+++.|.++++|| ....+...      .  ..-.+.|.+-+++|-   ..++|+| .+-.|++.|+. .
T Consensus       118 ----------tssSFDhtlKVWD-tnTlQ~a~------~--F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-S  177 (397)
T KOG4283|consen  118 ----------TSSSFDHTLKVWD-TNTLQEAV------D--FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-S  177 (397)
T ss_pred             ----------ecccccceEEEee-cccceeeE------E--eecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-C
Confidence                      7899999999999 43322211      1  123355777778875   3467778 89999999999 5


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC--CCCccccccccc
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA--PGTRSFFTEIIA  342 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~  342 (408)
                      +....+       +.+|...|.++.|+|....+|++|+.||.|++||++...-|   +..+..|..  +.....-..|.+
T Consensus       178 Gs~sH~-------LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~g  247 (397)
T KOG4283|consen  178 GSFSHT-------LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYG  247 (397)
T ss_pred             Ccceee-------eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccc
Confidence            555443       79999999999999999788999999999999999977544   355555542  112224567999


Q ss_pred             eeEEEEEccCCCEEEEeC-CCeEEEEECCCC
Q 015363          343 SISDIKFARNGRHILSRD-YMTLKLWDINMD  372 (408)
Q Consensus       343 ~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~  372 (408)
                      .|..++|+.||.+++++. |..+++|+..++
T Consensus       248 kvngla~tSd~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  248 KVNGLAWTSDARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             eeeeeeecccchhhhhccCccceEEeecccC
Confidence            999999999999999874 799999999874

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=2.1e-20  Score=162.77  Aligned_cols=285  Identities=17%  Similarity=0.189  Sum_probs=191.6

Q ss_pred             eccceEE--EEECCC---CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           34 EVDIISA--IEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        34 h~~~V~~--~~~s~~---~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      |.-++..  ..|++-   ...||.+..||.|.++|......                 .++-+.+..+..|.        
T Consensus        46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f-----------------r~ee~~lk~~~aH~--------  100 (720)
T KOG0321|consen   46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVF-----------------RLEERQLKKPLAHK--------  100 (720)
T ss_pred             CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhc-----------------chhhhhhccccccc--------
Confidence            3444444  667653   56899999999999999765432                 12223345567787        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE--eccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV--FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                          ..|.++.|.|.  ..+|++++.|.++++||+++.++...  ...|        .+.+.       +++|.|+...+
T Consensus       101 ----nAifDl~wapg--e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH--------~~Svk-------S~cf~~~n~~v  159 (720)
T KOG0321|consen  101 ----NAIFDLKWAPG--ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH--------TGSVK-------SECFMPTNPAV  159 (720)
T ss_pred             ----ceeEeeccCCC--ceeEEEccCCceeeeeeeccceeecceeeccc--------ccccc-------hhhhccCCCcc
Confidence                77999999773  56899999999999999999887765  3333        22333       67888887765


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccc--cc------------c---cccc----ceeeccccccceEE---EEeC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQE--TN------------L---VAGC----RRIYAHAHDYHINS---ISNN  242 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~------------~---~~~~----~~~~~~~~~~~v~~---i~~~  242 (408)
                                 +++|+.|+.|.+|| ++-..  ..            .   ..++    .+. ..++...|.+   +.+.
T Consensus       160 -----------F~tGgRDg~illWD-~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k-~kA~s~ti~ssvTvv~f  226 (720)
T KOG0321|consen  160 -----------FCTGGRDGEILLWD-CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK-WKAASNTIFSSVTVVLF  226 (720)
T ss_pred             -----------eeeccCCCcEEEEE-EeccchhhHHHHhhhhhccccCCCCCCchhhccccc-cccccCceeeeeEEEEE
Confidence                       68899999999999 54221  10            0   0011    111 1344455555   5566


Q ss_pred             CCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCC---cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCce
Q 015363          243 SDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDL---TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL  317 (408)
Q Consensus       243 ~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  317 (408)
                      .|...||++  .|+.|+|||++........-......+..|   .-.+.++.....| .+|.+.+.|+.|++|++.+-..
T Consensus       227 kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~  305 (720)
T KOG0321|consen  227 KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSI  305 (720)
T ss_pred             eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCc
Confidence            788889886  599999999996544433222211223333   4457888888889 4555455599999999987653


Q ss_pred             ecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEE
Q 015363          318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVM  390 (408)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  390 (408)
                        .++..+.++...          .....-..+||+.+|++|+ |...++|.+++.......+.+|.-++..+.
T Consensus       306 --sP~~~~sg~~~~----------sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~  367 (720)
T KOG0321|consen  306 --SPVAEFSGKLNS----------SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVR  367 (720)
T ss_pred             --CchhhccCcccc----------eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEe
Confidence              445555555321          1222335789999999995 899999999987778888888877654443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=2.2e-20  Score=158.13  Aligned_cols=265  Identities=12%  Similarity=0.178  Sum_probs=190.6

Q ss_pred             ceEEEEECCCCCeEEEe--ecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           37 IISAIEFDKSGDHLATG--DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      .|.++.|+.... |+++  +.|..+++|.-.+..                   |+...+....+...           .-
T Consensus        36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~-------------------~~Vp~~~k~~gd~~-----------~C   84 (673)
T KOG4378|consen   36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKT-------------------PEVPRVRKLTGDNA-----------FC   84 (673)
T ss_pred             cceeeeccccce-EEEeecCCceeEEEecccCCC-------------------CccceeeccccchH-----------HH
Confidence            389999987764 4444  467788899754432                   12223333333320           11


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      |.+..+     .-++++|+..+.|+|||++...+.+.++.+...        |.       .+.++.+..+|        
T Consensus        85 v~~~s~-----S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~st--------vt-------~v~YN~~Deyi--------  136 (673)
T KOG4378|consen   85 VACASQ-----SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQST--------VT-------YVDYNNTDEYI--------  136 (673)
T ss_pred             Hhhhhc-----ceeeeccCcCceeeehhhHHHHHhhhccCCcce--------eE-------EEEecCCccee--------
Confidence            333443     358999999999999999977777666665422        33       57788888887        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE-e-cCCeEEEEeCCCCCceeeEee
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                          ++++..|.|.+-. +.....   .   ..+.......|+-+.++|..+.+++ + ++|.|.+||+......+..  
T Consensus       137 ----Asvs~gGdiiih~-~~t~~~---t---t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~--  203 (673)
T KOG4378|consen  137 ----ASVSDGGDIIIHG-TKTKQK---T---TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA--  203 (673)
T ss_pred             ----EEeccCCcEEEEe-cccCcc---c---cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch--
Confidence                8888889888766 322111   1   1111222455778999999887765 4 8999999999944434332  


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  352 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd  352 (408)
                           ...|..+...|+|+|.++.+|++.+.|..|.+||++..+..    ..+...             .+...++|+++
T Consensus       204 -----~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~----~~l~y~-------------~Plstvaf~~~  261 (673)
T KOG4378|consen  204 -----SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST----DRLTYS-------------HPLSTVAFSEC  261 (673)
T ss_pred             -----hhhccCCcCcceecCCccceEEEecccceEEEeeccccccc----ceeeec-------------CCcceeeecCC
Confidence                 56799999999999999899999999999999999977554    222222             46889999999


Q ss_pred             CCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCC
Q 015363          353 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKN  395 (408)
Q Consensus       353 g~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (408)
                      |.+|++|+ .|.|..||++.-..+++++..|...+.++...+..
T Consensus       262 G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  262 GTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            99999996 59999999998789999999999988777765554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=3.8e-19  Score=151.01  Aligned_cols=259  Identities=15%  Similarity=0.222  Sum_probs=172.5

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      +.-|.|++|.++|+ ++||..+|.|.||+..+.+.                       ......|.            +.
T Consensus       246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~-----------------------~k~~~aH~------------gg  289 (626)
T KOG2106|consen  246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI-----------------------SKQVHAHD------------GG  289 (626)
T ss_pred             ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE-----------------------EeEeeecC------------Cc
Confidence            46799999999998 89999999999999865542                       23334888            77


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCC--Ccc-cC-CCCCeEeecCCce----------eeEEc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVH--PEK-AA-GNGPIFGSHVSAI----------PKSYM  180 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~-~~-~~~~v~~~~~~~~----------~~~~~  180 (408)
                      |.+++...  +| .|++|+.|+.|..||-.-. ..+..+.+..  +.. .. ..+.++.......          .+..-
T Consensus       290 v~~L~~lr--~G-tllSGgKDRki~~Wd~~y~-k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~  365 (626)
T KOG2106|consen  290 VFSLCMLR--DG-TLLSGGKDRKIILWDDNYR-KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ  365 (626)
T ss_pred             eEEEEEec--Cc-cEeecCccceEEecccccc-ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE
Confidence            99999964  47 5667999999999993221 1111111111  100 00 0111221111111          11111


Q ss_pred             cCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEE
Q 015363          181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLW  259 (408)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iw  259 (408)
                      -.+..+-.+..+.....+++++.|+.+++|+ -    .....      ...-..++.++.|+|.| .+|.| ..|...+.
T Consensus       366 gh~delwgla~hps~~q~~T~gqdk~v~lW~-~----~k~~w------t~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~  433 (626)
T KOG2106|consen  366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D----HKLEW------TKIIEDPAECADFHPSG-VVAVGTATGRWFVL  433 (626)
T ss_pred             ecccceeeEEcCCChhheeeccCcceEEEcc-C----CceeE------EEEecCceeEeeccCcc-eEEEeeccceEEEE
Confidence            1122333334444555679999999999998 1    11111      12233678899999999 88888 89999999


Q ss_pred             eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccc
Q 015363          260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE  339 (408)
Q Consensus       260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (408)
                      |.++ ...+.+       .. ...++++++|+|+| .+||.|+.|+.|+||-+.......   .....+         . 
T Consensus       434 d~e~-~~lv~~-------~~-d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y---~r~~k~---------~-  490 (626)
T KOG2106|consen  434 DTET-QDLVTI-------HT-DNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKY---SRVGKC---------S-  490 (626)
T ss_pred             eccc-ceeEEE-------Ee-cCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEE---EEeeee---------c-
Confidence            9994 444443       12 27889999999999 999999999999999988765321   111111         1 


Q ss_pred             ccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363          340 IIASISDIKFARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       340 h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~  369 (408)
                       .++|+.+.||+|+++|.+-+ |-.|..|.-
T Consensus       491 -gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  491 -GSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             -CceeEEeeecCCCceEEeccCceEEEEEcc
Confidence             26899999999999999975 788999943

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.86  E-value=1.4e-18  Score=147.55  Aligned_cols=276  Identities=12%  Similarity=0.232  Sum_probs=195.6

Q ss_pred             cceeeccceEEEEECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      +...-++.|....|+|.+. ++++++ .|.+..|+..++...                    +....|..++.       
T Consensus       195 ~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~--------------------k~~~~fek~ek-------  246 (626)
T KOG2106|consen  195 PVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLV--------------------KRQGIFEKREK-------  246 (626)
T ss_pred             cceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceE--------------------EEeeccccccc-------
Confidence            4445667889999999755 555554 569999998877532                    11223444442       


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          ..|.|++|.+  || -+++|.++|.|.||+..+.+..+....|        ++.|+       +++...+|..   
T Consensus       247 ----k~Vl~v~F~e--ng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH--------~ggv~-------~L~~lr~Gtl---  301 (626)
T KOG2106|consen  247 ----KFVLCVTFLE--NG-DVITGDSGGNILIWSKGTNRISKQVHAH--------DGGVF-------SLCMLRDGTL---  301 (626)
T ss_pred             ----eEEEEEEEcC--CC-CEEeecCCceEEEEeCCCceEEeEeeec--------CCceE-------EEEEecCccE---
Confidence                5599999964  46 4889999999999999877665544433        55676       7888889986   


Q ss_pred             ccccccCccccCCCCCceeeeceeeec----ccccc----------------ccc------------cceeeccccccce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTS----QETNL----------------VAG------------CRRIYAHAHDYHI  236 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~----------------~~~------------~~~~~~~~~~~~v  236 (408)
                                ++|+.|+.|..||-..+    .+...                .+.            -......+|....
T Consensus       302 ----------lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~del  371 (626)
T KOG2106|consen  302 ----------LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDEL  371 (626)
T ss_pred             ----------eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccce
Confidence                      56999999999982100    00000                000            0011125777888


Q ss_pred             EEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          237 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       237 ~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                      ..++.+|+.+.++++ .|+.+++|+ + .+.....+         -..++.++.|+|.|  .+|.|...|...+.|..+.
T Consensus       372 wgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~~---------~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~  438 (626)
T KOG2106|consen  372 WGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTKI---------IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ  438 (626)
T ss_pred             eeEEcCCChhheeeccCcceEEEcc-C-CceeEEEE---------ecCceeEeeccCcc--eEEEeeccceEEEEecccc
Confidence            899999999999998 999999999 3 33333321         24667899999998  8999999999999999986


Q ss_pred             ceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc-cceEEecC
Q 015363          316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL-RPKVMHSS  393 (408)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~  393 (408)
                      ..+       ..|..          ..+++.++|+|+|.+||.|+ |+.|+||.++..+..+..+..+.+. ...+....
T Consensus       439 ~lv-------~~~~d----------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~  501 (626)
T KOG2106|consen  439 DLV-------TIHTD----------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS  501 (626)
T ss_pred             eeE-------EEEec----------CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC
Confidence            443       22211          25799999999999999997 7999999999888888888777762 33333344


Q ss_pred             CCeee
Q 015363          394 KNYFM  398 (408)
Q Consensus       394 ~~~~~  398 (408)
                      ++.++
T Consensus       502 Ds~~~  506 (626)
T KOG2106|consen  502 DSQFL  506 (626)
T ss_pred             CCceE
Confidence            44443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=3.6e-21  Score=178.32  Aligned_cols=259  Identities=13%  Similarity=0.161  Sum_probs=187.8

Q ss_pred             cceeeccceEEEEECCCCCe----EEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDH----LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY  105 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~----l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  105 (408)
                      ..++-...-+.++|.+.|..    ||.|..||.|.+||...-..                 ......+..+..|+     
T Consensus        59 ~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------------~~~~~~la~~~~h~-----  116 (1049)
T KOG0307|consen   59 GSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------------NASEEVLATKSKHT-----  116 (1049)
T ss_pred             ccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------------CcchHHHhhhcccC-----
Confidence            33455677889999997765    99999999999999765210                 01334556677788     


Q ss_pred             ccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                             +.|..+.|++..+ .+||+|+.||.|.|||+..-+.-.....      ..+...|.       +++|+..-..
T Consensus       117 -------G~V~gLDfN~~q~-nlLASGa~~geI~iWDlnn~~tP~~~~~------~~~~~eI~-------~lsWNrkvqh  175 (1049)
T KOG0307|consen  117 -------GPVLGLDFNPFQG-NLLASGADDGEILIWDLNKPETPFTPGS------QAPPSEIK-------CLSWNRKVSH  175 (1049)
T ss_pred             -------CceeeeeccccCC-ceeeccCCCCcEEEeccCCcCCCCCCCC------CCCcccce-------EeccchhhhH
Confidence                   7799999987643 5999999999999999987432221110      11122233       6777766655


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe--c--CCeEEEEe
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA--D--DLRINLWN  260 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~--~--d~~i~iwd  260 (408)
                      +           +++++.++.+.+|| ++..+....-.     .......+..++|+|+. ..++++  +  .-.|.+||
T Consensus       176 I-----------LAS~s~sg~~~iWD-lr~~~pii~ls-----~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD  238 (1049)
T KOG0307|consen  176 I-----------LASGSPSGRAVIWD-LRKKKPIIKLS-----DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD  238 (1049)
T ss_pred             H-----------hhccCCCCCceecc-ccCCCcccccc-----cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence            4           68899999999999 66543221100     11222457899999997 334443  3  45899999


Q ss_pred             CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      ++......++       +++|...|.++.|++.++.+|++++.|++|.+|+.++++.+    ..+...            
T Consensus       239 lR~assP~k~-------~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl----~~~p~~------------  295 (1049)
T KOG0307|consen  239 LRFASSPLKI-------LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL----GELPAQ------------  295 (1049)
T ss_pred             ccccCCchhh-------hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe----eecCCC------------
Confidence            9966666654       68899999999999998899999999999999999999765    555543            


Q ss_pred             cceeEEEEEccCCC-EEEEeC-CCeEEEEECCC
Q 015363          341 IASISDIKFARNGR-HILSRD-YMTLKLWDINM  371 (408)
Q Consensus       341 ~~~i~~~~~spdg~-~l~s~~-d~~v~~wd~~~  371 (408)
                      ..++..+.|+|... .+++++ ||.|.|+.+..
T Consensus       296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             CcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence            36899999999776 555556 79999999975

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=2.4e-19  Score=161.39  Aligned_cols=289  Identities=14%  Similarity=0.186  Sum_probs=189.4

Q ss_pred             CcccceeeecccCcCcccceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccc
Q 015363           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR   91 (408)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~   91 (408)
                      ..+.|.+...   ..+.....-...|+|+.|+|. ..+||.|+.+|.|.+||+..+...                 |-..
T Consensus       223 ~~~vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-----------------~~s~  282 (555)
T KOG1587|consen  223 VLLVWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-----------------PPSG  282 (555)
T ss_pred             eEEEEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-----------------CCcc
Confidence            4677888864   122233445678999999995 779999999999999998876531                 0000


Q ss_pred             eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE-EEEeccCCCCcccCCCCCeEee
Q 015363           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGS  170 (408)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~  170 (408)
                      .-.....|.            .+++.+.|..++.+.-|++++.||.|..|+++.-.. ...........    .+.-...
T Consensus       283 ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~----~~~~~~~  346 (555)
T KOG1587|consen  283 LSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH----KGQQSSK  346 (555)
T ss_pred             cccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc----ccccccc
Confidence            111123344            889999998776666799999999999998764322 11111100000    0000000


Q ss_pred             cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccccc--ccccceeeccccccceEEEEeCCCCCEE
Q 015363          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL--VAGCRRIYAHAHDYHINSISNNSDGETF  248 (408)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l  248 (408)
                      ....+.+.|.+.....           ++.|+++|.|..-. -.+.....  ..+.... ...|.+.|+++.++|-+..+
T Consensus       347 ~~~~t~~~F~~~~p~~-----------FiVGTe~G~v~~~~-r~g~~~~~~~~~~~~~~-~~~h~g~v~~v~~nPF~~k~  413 (555)
T KOG1587|consen  347 AVGATSLKFEPTDPNH-----------FIVGTEEGKVYKGC-RKGYTPAPEVSYKGHST-FITHIGPVYAVSRNPFYPKN  413 (555)
T ss_pred             ccceeeEeeccCCCce-----------EEEEcCCcEEEEEe-ccCCccccccccccccc-ccccCcceEeeecCCCccce
Confidence            1122256666655433           57888899887622 11111111  1111222 36788999999999998766


Q ss_pred             EEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccc
Q 015363          249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE  327 (408)
Q Consensus       249 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  327 (408)
                      +.. .|.+++||.......++.       .+..+...+++++|||..+.+|+++..||.|.+||+.....  .|+.....
T Consensus       414 fls~gDW~vriWs~~~~~~Pl~-------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~--~Pv~s~~~  484 (555)
T KOG1587|consen  414 FLSVGDWTVRIWSEDVIASPLL-------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE--EPVLSQKV  484 (555)
T ss_pred             eeeeccceeEeccccCCCCcch-------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc--CCcccccc
Confidence            655 899999999873333322       14556677999999999999999999999999999986543  22232222


Q ss_pred             ccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCC
Q 015363          328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM  371 (408)
Q Consensus       328 ~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~  371 (408)
                      .            ......+.|+++|+.|+.|++ |.+.+|++..
T Consensus       485 ~------------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  485 C------------SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             c------------ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            2            245678899999999999986 9999999963

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=2.1e-19  Score=156.66  Aligned_cols=270  Identities=13%  Similarity=0.178  Sum_probs=177.0

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ....|.+.|..+.|-|-...|++++-|.++++||+++.+..                     -...+.+|+         
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~---------------------G~~~~~GH~---------  144 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV---------------------GGRLNLGHT---------  144 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee---------------------cceeecccc---------
Confidence            45689999999999996668999999999999999987653                     112477888         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEE-------EeccCCC---Ccc---------cCCCCCeEee
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-------VFDWNVH---PEK---------AAGNGPIFGS  170 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~-------~~~~~~~---~~~---------~~~~~~v~~~  170 (408)
                         ..|.+++|.|... ..|++|++||.|.|||++-.....       ....+..   +..         ..+.+.+.  
T Consensus       145 ---~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~--  218 (720)
T KOG0321|consen  145 ---GSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF--  218 (720)
T ss_pred             ---cccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee--
Confidence               7799999998643 589999999999999997543111       1111111   100         00011111  


Q ss_pred             cCCceeeEEccCCCeeecccccccCccccCCCC-Cceeeeceeeeccccccccccceee-cccc---ccceEEEEeCCCC
Q 015363          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIY-AHAH---DYHINSISNNSDG  245 (408)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~v~~i~~~~~~  245 (408)
                        +.+.+.+..|...|            ++++. |+.|++|| ++.........+.... ...|   .-.+.++..+..|
T Consensus       219 --ssvTvv~fkDe~tl------------aSaga~D~~iKVWD-LRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG  283 (720)
T KOG0321|consen  219 --SSVTVVLFKDESTL------------ASAGAADSTIKVWD-LRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG  283 (720)
T ss_pred             --eeeEEEEEecccee------------eeccCCCcceEEEe-ecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence              11223444444444            66555 99999999 7765544433333221 1222   3356778888888


Q ss_pred             CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcC--CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccc
Q 015363          246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS  322 (408)
Q Consensus       246 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  322 (408)
                      .+|.+. .|+.|++|++.........      .+.++..  .-..-..+|++ .++++|+.|...++|.+.+...   +.
T Consensus       284 t~L~AsCtD~sIy~ynm~s~s~sP~~------~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~---~~  353 (720)
T KOG0321|consen  284 TYLFASCTDNSIYFYNMRSLSISPVA------EFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEA---PP  353 (720)
T ss_pred             CeEEEEecCCcEEEEeccccCcCchh------hccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccC---Ch
Confidence            887766 9999999999854332110      1222211  11233568999 9999999999999999987542   23


Q ss_pred             cccccccCCCCccccccccceeEEEEEccCC-CEEEEeC-CCeEEEEECCCC
Q 015363          323 KLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMD  372 (408)
Q Consensus       323 ~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg-~~l~s~~-d~~v~~wd~~~~  372 (408)
                      ..+.+            |...|++++|.|.. .-+++++ |..+++|++..+
T Consensus       354 ~~l~G------------ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  354 ALLLG------------HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             hhhhC------------cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            44444            46889999999832 2345554 699999999763

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=3e-19  Score=141.29  Aligned_cols=274  Identities=12%  Similarity=0.172  Sum_probs=181.9

Q ss_pred             ceeeccceEEEEECCC-CCeEEEeecC-------CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec-cCCc
Q 015363           31 EVQEVDIISAIEFDKS-GDHLATGDRG-------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEP  101 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~-~~~l~sg~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~  101 (408)
                      +..|.+.|+.++-+|. .++|+|+..+       -.+-||.+...... .             .+...+.+..+. .+- 
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-S-------------~~~tlE~v~~Ldteav-  123 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-S-------------NSSTLECVASLDTEAV-  123 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-c-------------ccchhhHhhcCCHHHh-
Confidence            3457899999999995 5567776542       24678998654321 1             111222233332 222 


Q ss_pred             ccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE-EEEeccCCCCcccCCCCCeEeecCCceeeEEc
Q 015363          102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM  180 (408)
Q Consensus       102 ~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  180 (408)
                                 ++|.|+.|.|+  +..+++-. |..|.+|++.++.. ...........          ......+-.|+
T Consensus       124 -----------g~i~cvew~Pn--s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e----------~~~~ftsg~Ws  179 (370)
T KOG1007|consen  124 -----------GKINCVEWEPN--SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE----------MRHSFTSGAWS  179 (370)
T ss_pred             -----------CceeeEEEcCC--CCeeEEec-cCceEEEEcccCcchheeeccccccc----------ccceecccccC
Confidence                       57999999875  65776654 88999999987654 22222211110          00111245677


Q ss_pred             c--CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeE
Q 015363          181 A--NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRI  256 (408)
Q Consensus       181 ~--~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i  256 (408)
                      |  +|..             +....++++..|| ++.+..      ...+-.+|...|+.+.|+|+.+ +|+++ +||.|
T Consensus       180 pHHdgnq-------------v~tt~d~tl~~~D-~RT~~~------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyv  239 (370)
T KOG1007|consen  180 PHHDGNQ-------------VATTSDSTLQFWD-LRTMKK------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYV  239 (370)
T ss_pred             CCCccce-------------EEEeCCCcEEEEE-ccchhh------hcchhhhhcceeeeccCCCCceEEEEEcCCCccE
Confidence            7  4444             6667889999999 654322      2222378889999999999975 55667 99999


Q ss_pred             EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecc-----cccccccc---
Q 015363          257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-----HSKLFEEQ---  328 (408)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~---  328 (408)
                      ++||++..+.++.       ++.+|.-+|+++.|+|...+++++|+.|..|.+|...+-.....     .....+.+   
T Consensus       240 riWD~R~tk~pv~-------el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse  312 (370)
T KOG1007|consen  240 RIWDTRKTKFPVQ-------ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE  312 (370)
T ss_pred             EEEeccCCCcccc-------ccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhH
Confidence            9999997666654       37899999999999999889999999999999997654321100     00001111   


Q ss_pred             -----cCCCCccccccccceeEEEEEccCCCEEEEe-C-CCeEEEEECC
Q 015363          329 -----EAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDIN  370 (408)
Q Consensus       329 -----~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~-d~~v~~wd~~  370 (408)
                           -..+....+..|...|.+++||.-..+++++ + ||.+.|=.+.
T Consensus       313 er~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  313 ERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             HhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                 1122344678899999999999877887776 6 6999887764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.85  E-value=3.8e-19  Score=156.41  Aligned_cols=332  Identities=16%  Similarity=0.191  Sum_probs=219.1

Q ss_pred             cceeeccceEEEEECCCCC---eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcccee----------eee
Q 015363           30 EEVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK----------TEF   96 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~---~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----------~~~   96 (408)
                      +..+|.++|.+++|...+.   +||++|.|..||||.+.-........++...  ......|.+...          +.+
T Consensus       186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~--t~~~~~~~f~~l~~i~~~is~eall  263 (764)
T KOG1063|consen  186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSL--TTLSNLPVFMILEEIQYRISFEALL  263 (764)
T ss_pred             EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccc--ccccCCceeeeeeeEEEEEehhhhh
Confidence            5568999999999997543   8999999999999998655422211111100  011112222211          334


Q ss_pred             ccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCcee
Q 015363           97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP  176 (408)
Q Consensus        97 ~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (408)
                      .||+            +.|.++.|+|.  +..|++++.|.++.+|...+..-+.+......... ...+..+       .
T Consensus       264 ~GHe------------DWV~sv~W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-g~a~GF~-------g  321 (764)
T KOG1063|consen  264 MGHE------------DWVYSVWWHPE--GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-GSAGGFW-------G  321 (764)
T ss_pred             cCcc------------cceEEEEEccc--hhhheecccCcceEEEecCCccceEEEEEEeeccc-cccccee-------e
Confidence            5777            88999999765  77899999999999998876532222221111100 0122233       6


Q ss_pred             eEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCe
Q 015363          177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR  255 (408)
Q Consensus       177 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~  255 (408)
                      ..|+|++..+            ++-+..|..++|. -   +......... ...+|.+.|++++|+|.|.+|.+. .|.+
T Consensus       322 ~lw~~n~~~i------------i~~g~~Gg~hlWk-t---~d~~~w~~~~-~iSGH~~~V~dv~W~psGeflLsvs~DQT  384 (764)
T KOG1063|consen  322 GLWSPNSNVI------------IAHGRTGGFHLWK-T---KDKTFWTQEP-VISGHVDGVKDVDWDPSGEFLLSVSLDQT  384 (764)
T ss_pred             EEEcCCCCEE------------EEecccCcEEEEe-c---cCccceeecc-ccccccccceeeeecCCCCEEEEeccccc
Confidence            7899999887            8888889999886 1   1111112222 248999999999999999999998 8999


Q ss_pred             EEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc-------------------
Q 015363          256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA-------------------  316 (408)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-------------------  316 (408)
                      -++|-.-..+....  ++  .+-+-|.-.++|++|-+.. ..|++|.....+|+|+....-                   
T Consensus       385 TRlFa~wg~q~~wH--Ei--aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p  459 (764)
T KOG1063|consen  385 TRLFARWGRQQEWH--EI--ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELP  459 (764)
T ss_pred             eeeeccccccccee--ee--cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcc
Confidence            99987652222221  11  2234577778999998864 789999999999999754210                   


Q ss_pred             ---------eecccccc---ccccc------C-----------CCC------------ccccccccceeEEEEEccCCCE
Q 015363          317 ---------LCDTHSKL---FEEQE------A-----------PGT------------RSFFTEIIASISDIKFARNGRH  355 (408)
Q Consensus       317 ---------~~~~~~~~---~~~~~------~-----------~~~------------~~~~~~h~~~i~~~~~spdg~~  355 (408)
                               +..++...   -.+..      .           |..            ...+.||.-.|.+++.+|+|++
T Consensus       460 ~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnl  539 (764)
T KOG1063|consen  460 DGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNL  539 (764)
T ss_pred             cccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCE
Confidence                     00000000   00000      0           000            0124788899999999999999


Q ss_pred             EEEe--C---C-CeEEEEECCCCCCceeeeeecccccceEEecCCCeee---eeeceeeecC
Q 015363          356 ILSR--D---Y-MTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM---GLDNIHTLYE  408 (408)
Q Consensus       356 l~s~--~---d-~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~  408 (408)
                      ||++  +   . ..|++|+..+. ...+.+.+|......+....++.++   +-||-..|||
T Consensus       540 iASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~  600 (764)
T KOG1063|consen  540 IASACKSSLKEHAVIRLWNTANW-LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE  600 (764)
T ss_pred             EeehhhhCCccceEEEEEeccch-hhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence            9986  2   2 67999999984 7777999999998888877776644   4488888886

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=7.4e-20  Score=153.78  Aligned_cols=236  Identities=15%  Similarity=0.254  Sum_probs=173.1

Q ss_pred             ccCcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcc
Q 015363           11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (408)
Q Consensus        11 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~   90 (408)
                      ....+.|.++.  |.... ...+|--.|+|+.|+-||.+|+||+.||.|.+|.+.+.-..      .        .....
T Consensus       102 ~g~lYlWelss--G~LL~-v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a------~--------~~~~~  164 (476)
T KOG0646|consen  102 SGNLYLWELSS--GILLN-VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA------D--------NDHSV  164 (476)
T ss_pred             cCcEEEEEecc--ccHHH-HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc------c--------cCCCc
Confidence            34577888886  22221 33689999999999999999999999999999997643211      0        00134


Q ss_pred             ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEee
Q 015363           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (408)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  170 (408)
                      +++..|..|.            -+|+++...+.+...++++++.|.++++||+..+..+..+.+....         .  
T Consensus       165 ~p~~~f~~Ht------------lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si---------~--  221 (476)
T KOG0646|consen  165 KPLHIFSDHT------------LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSI---------K--  221 (476)
T ss_pred             cceeeeccCc------------ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcc---------e--
Confidence            4567788998            7799999976644569999999999999999999888776664322         2  


Q ss_pred             cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccc----------ccccccceeecccccc--ceEE
Q 015363          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET----------NLVAGCRRIYAHAHDY--HINS  238 (408)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~~--~v~~  238 (408)
                           +++..|.+..+            +.|+.+|.|.+.+ +.....          ......++.+ .+|.+  .|+|
T Consensus       222 -----av~lDpae~~~------------yiGt~~G~I~~~~-~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITc  282 (476)
T KOG0646|consen  222 -----AVALDPAERVV------------YIGTEEGKIFQNL-LFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITC  282 (476)
T ss_pred             -----eEEEcccccEE------------EecCCcceEEeee-hhcCCcccccccccccccccceeeee-ccccCCcceeE
Confidence                 68888888887            9999999998877 433221          1222233343 78877  9999


Q ss_pred             EEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363          239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       239 i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  313 (408)
                      ++++-||.+|++| .||.|+|||+. ++++++.       +....++|+.+.+.|-.+..+..-.....+-.|++.
T Consensus       283 Lais~DgtlLlSGd~dg~VcvWdi~-S~Q~iRt-------l~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk  350 (476)
T KOG0646|consen  283 LAISTDGTLLLSGDEDGKVCVWDIY-SKQCIRT-------LQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK  350 (476)
T ss_pred             EEEecCccEEEeeCCCCCEEEEecc-hHHHHHH-------HhhhccccceeEeeccccceecccccCccCCchHhh
Confidence            9999999999999 89999999999 6777654       333578899999987763333333334455555544

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.84  E-value=3.9e-20  Score=150.64  Aligned_cols=232  Identities=13%  Similarity=0.192  Sum_probs=155.9

Q ss_pred             eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc--ccCCCCCeEe
Q 015363           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE--KAAGNGPIFG  169 (408)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~  169 (408)
                      ++..+.+|.            +.|.+++=+|..- ..+++|+.||.|++||+.+..+...+..+....  .......++.
T Consensus        58 Fv~~L~gHr------------dGV~~lakhp~~l-s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~t  124 (433)
T KOG0268|consen   58 FVGSLDGHR------------DGVSCLAKHPNKL-STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFT  124 (433)
T ss_pred             chhhccccc------------cccchhhcCcchh-hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEE
Confidence            556678888            8899999876532 478999999999999999988888877775441  1111123333


Q ss_pred             ecCCceeeEEccCCCeeecccccc---------cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEE
Q 015363          170 SHVSAIPKSYMANGGCGERNFGCA---------SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS  240 (408)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  240 (408)
                      +++...--.|.-++..+.++.+.+         ....+++++  ..|.+|| ..+      ..+++.+ .-....|.++.
T Consensus       125 vgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcG--e~i~IWD-~~R------~~Pv~sm-swG~Dti~svk  194 (433)
T KOG0268|consen  125 VGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCG--EQIDIWD-EQR------DNPVSSM-SWGADSISSVK  194 (433)
T ss_pred             ecCCcceeeeeccCCcceeeeccccccccccccccccccccC--ceeeecc-ccc------CCcccee-ecCCCceeEEe
Confidence            333222223333333333332211         112233332  3577787 333      2222222 22335688999


Q ss_pred             eCCCC-CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          241 NNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       241 ~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      |+|.. .+|+++ +|+.|.+||++......+++      +   ...-..|+|+|.+ ..|++|+.|..++.||++...  
T Consensus       195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi------~---~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~--  262 (433)
T KOG0268|consen  195 FNPVETSILASCASDRSIVLYDLRQASPLKKVI------L---TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLS--  262 (433)
T ss_pred             cCCCcchheeeeccCCceEEEecccCCccceee------e---eccccceecCccc-cceeeccccccceehhhhhhc--
Confidence            99986 456667 99999999999655443332      1   2223679999977 889999999999999999654  


Q ss_pred             cccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                       +|+..+.+|            .+.|.+++|||.|+-+++|+ |.+|+||.++.
T Consensus       263 -~p~~v~~dh------------vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~  303 (433)
T KOG0268|consen  263 -RPLNVHKDH------------VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH  303 (433)
T ss_pred             -ccchhhccc------------ceeEEEeccCCCcchhccccccceEEEeecCC
Confidence             445555555            78999999999999999998 79999999985

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.84  E-value=1.4e-17  Score=145.06  Aligned_cols=240  Identities=10%  Similarity=0.121  Sum_probs=155.7

Q ss_pred             CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCC
Q 015363           47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS  126 (408)
Q Consensus        47 ~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~  126 (408)
                      +.++++++.|+.|++||..+++.                       +..+..+.             .+.+++|+|+  +
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~-----------------------~~~~~~~~-------------~~~~l~~~~d--g   42 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEV-----------------------TRTFPVGQ-------------RPRGITLSKD--G   42 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCce-----------------------EEEEECCC-------------CCCceEECCC--C
Confidence            35788999999999999876642                       33444443             3678999654  7


Q ss_pred             cEE-EEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363          127 ALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (408)
Q Consensus       127 ~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (408)
                      ..+ ++++.++.|++||+.+++....+.....         .       ..+.++|+++.+           ++++..++
T Consensus        43 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---------~-------~~~~~~~~g~~l-----------~~~~~~~~   95 (300)
T TIGR03866        43 KLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---------P-------ELFALHPNGKIL-----------YIANEDDN   95 (300)
T ss_pred             CEEEEEECCCCeEEEEECCCCcEEEeccCCCC---------c-------cEEEECCCCCEE-----------EEEcCCCC
Confidence            665 5667899999999998876654432211         1       147889999876           24456688


Q ss_pred             eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC-CeEEEEeCCCCCceeeEeecCCCcccCCcC
Q 015363          206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANMEDLTE  283 (408)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  283 (408)
                      .+++|| +...      .....+  .+...+.+++|+|++.+++++ .+ ..+.+||.++. ......      .  ...
T Consensus        96 ~l~~~d-~~~~------~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~-~~~~~~------~--~~~  157 (300)
T TIGR03866        96 LVTVID-IETR------KVLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY-EIVDNV------L--VDQ  157 (300)
T ss_pred             eEEEEE-CCCC------eEEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC-eEEEEE------E--cCC
Confidence            999999 5331      112221  112346789999999999988 54 46778898743 332221      1  122


Q ss_pred             CeEEEEEcCCCCceE-EEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe--C
Q 015363          284 VITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D  360 (408)
Q Consensus       284 ~v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~  360 (408)
                      .+..++|+|++ ++| +++..++.|++||+++++..    ..+..+...    .... ......++|+|++++++.+  +
T Consensus       158 ~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~----~~~~-~~~~~~i~~s~dg~~~~~~~~~  227 (300)
T TIGR03866       158 RPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPG----VHPE-AVQPVGIKLTKDGKTAFVALGP  227 (300)
T ss_pred             CccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeecccc----cccc-cCCccceEECCCCCEEEEEcCC
Confidence            35679999999 666 45556999999999988543    222211000    0000 0123568899999986554  4


Q ss_pred             CCeEEEEECCCCCCceeeee
Q 015363          361 YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       361 d~~v~~wd~~~~~~~~~~~~  380 (408)
                      ++.|.+||+++ ++.+..+.
T Consensus       228 ~~~i~v~d~~~-~~~~~~~~  246 (300)
T TIGR03866       228 ANRVAVVDAKT-YEVLDYLL  246 (300)
T ss_pred             CCeEEEEECCC-CcEEEEEE
Confidence            57899999986 66665553

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1.1e-20  Score=166.77  Aligned_cols=197  Identities=15%  Similarity=0.275  Sum_probs=159.8

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..|.++..-  ..+..+++|+.|-.+-+|.+........+..+..        .|.       ++.|++....+      
T Consensus        29 aav~~lk~~--~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes--------pIe-------Sl~f~~~E~Ll------   85 (825)
T KOG0267|consen   29 AAVGCLKIR--KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES--------PIE-------SLTFDTSERLL------   85 (825)
T ss_pred             hhhceeeee--ccceeeccCCCceeeccccccCCchhheeeccCC--------cce-------eeecCcchhhh------
Confidence            567777773  3367889999999999999876655554444432        343       57788887776      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                            ++|..+|+|++|| +.      ..+.++.+ .+|...+.++.|+|-+.++|.| .|..+++||.+. ..+... 
T Consensus        86 ------aagsasgtiK~wD-le------eAk~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~-  149 (825)
T KOG0267|consen   86 ------AAGSASGTIKVWD-LE------EAKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHT-  149 (825)
T ss_pred             ------cccccCCceeeee-hh------hhhhhhhh-hccccCcceeeeccceEEeccccccccceehhhhc-cCceee-
Confidence                  9999999999999 43      23444453 8999999999999999999998 899999999994 444443 


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                            +.+|...|..++|+|+| +++++|+.|.+++|||...|+..    ..|..|            .+.+..+.|+|
T Consensus       150 ------~~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~----~ef~~~------------e~~v~sle~hp  206 (825)
T KOG0267|consen  150 ------YKSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLS----KEFKSH------------EGKVQSLEFHP  206 (825)
T ss_pred             ------ecCCcceeEEEeecCCC-ceeeccCCcceeeeecccccccc----cccccc------------cccccccccCc
Confidence                  56799999999999999 99999999999999999999765    677767            47899999999


Q ss_pred             CCCEEEEeC-CCeEEEEECCC
Q 015363          352 NGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       352 dg~~l~s~~-d~~v~~wd~~~  371 (408)
                      ..-++++|+ |++|++||+++
T Consensus       207 ~e~Lla~Gs~d~tv~f~dlet  227 (825)
T KOG0267|consen  207 LEVLLAPGSSDRTVRFWDLET  227 (825)
T ss_pred             hhhhhccCCCCceeeeeccce
Confidence            988888885 89999999986

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=8.3e-20  Score=152.54  Aligned_cols=211  Identities=16%  Similarity=0.275  Sum_probs=158.2

Q ss_pred             eeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           32 VQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      .+|++.|.+++|+.. ...||+||.|.+|++||+.++++                       ...+..|.          
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p-----------------------~~s~~~~~----------  286 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP-----------------------KSSITHHG----------  286 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc-----------------------ceehhhcC----------
Confidence            469999999999986 56899999999999999998875                       35566677          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                        ..|.++.|+|.. .+.|++|+.|++|.+.|.+... .-...+.         .+.+-       .++|.|.....   
T Consensus       287 --k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---------~g~VE-------kv~w~~~se~~---  344 (463)
T KOG0270|consen  287 --KKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKF---------DGEVE-------KVAWDPHSENS---  344 (463)
T ss_pred             --CceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEe---------ccceE-------EEEecCCCcee---
Confidence              779999999754 4699999999999999998421 1111111         22233       57787777654   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCce
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                              ++++..||.|+-+| ++..     +++...+ .+|...|.++++++.- .+++++ .|+.|++|++......
T Consensus       345 --------f~~~tddG~v~~~D-~R~~-----~~~vwt~-~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~  409 (463)
T KOG0270|consen  345 --------FFVSTDDGTVYYFD-IRNP-----GKPVWTL-KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK  409 (463)
T ss_pred             --------EEEecCCceEEeee-cCCC-----CCceeEE-EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence                    58889999999999 5543     2566665 8999999999999876 456667 8999999999843322


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      ...    ...+  .-+...|.++.|+-..++|.|+..+.+++||+.+...+
T Consensus       410 ~v~----~~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  410 SVK----EHSF--KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccc----cccc--cccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            110    0001  12336788899998789999999999999999887544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=3.8e-19  Score=146.51  Aligned_cols=254  Identities=16%  Similarity=0.278  Sum_probs=168.3

Q ss_pred             eeeecccCcCcccceeeccceEEEEECC-----CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363           18 KFSQVFGERTAGEEVQEVDIISAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (408)
Q Consensus        18 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~-----~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   92 (408)
                      ||..+||.....+.--..=.|+.+.|..     +.++||.        +|+..++..  ...-++...+.   ..++   
T Consensus        10 KfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAv--------i~easgGga--f~ViPl~k~Gr---~d~~---   73 (472)
T KOG0303|consen   10 KFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAV--------IIEASGGGA--FLVIPLVKTGR---MDAS---   73 (472)
T ss_pred             hhHHHhccccchhhhhcceeeeeeeccccccccCCceEEE--------EEecCCCcc--eeecccccccc---cCCC---
Confidence            5667787665544444445677777754     2344443        455444421  11111111111   1111   


Q ss_pred             eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecC
Q 015363           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (408)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  172 (408)
                      .-.+.||+            ++|.+++|+|..| ..+|+|+.|.+|.||.+-.+.....+                    
T Consensus        74 ~P~v~GHt------------~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~l--------------------  120 (472)
T KOG0303|consen   74 YPLVCGHT------------APVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDL--------------------  120 (472)
T ss_pred             CCCccCcc------------ccccccccCccCC-ceeecCCCCceEEEEECCCcccccCc--------------------
Confidence            12467888            8899999999644 68999999999999998755432211                    


Q ss_pred             CceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe
Q 015363          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA  251 (408)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~  251 (408)
                                                                       ..++.. +.+|...|.-++|+|.- +.|+++
T Consensus       121 -------------------------------------------------tepvv~-L~gH~rrVg~V~wHPtA~NVLlsa  150 (472)
T KOG0303|consen  121 -------------------------------------------------TEPVVE-LYGHQRRVGLVQWHPTAPNVLLSA  150 (472)
T ss_pred             -------------------------------------------------ccceEE-EeecceeEEEEeecccchhhHhhc
Confidence                                                             111222 48999999999999985 667776


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC
Q 015363          252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  330 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  330 (408)
                       .|.+|.+|++.++...+.        +. |...|++++|+-+| .+|++.+.|..|+|||.++++.+    ..-.+|+.
T Consensus       151 g~Dn~v~iWnv~tgeali~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v----~e~~~heG  216 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEALIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVV----SEGVAHEG  216 (472)
T ss_pred             cCCceEEEEeccCCceeee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEe----eecccccC
Confidence             899999999997666654        34 99999999999999 99999999999999999999776    33345532


Q ss_pred             CCCccccccccceeEEEEEccCCCEEEEe----CCCeEEEEECCCCCCceeeeeecccccceEEecCCCe
Q 015363          331 PGTRSFFTEIIASISDIKFARNGRHILSR----DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNY  396 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~spdg~~l~s~----~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (408)
                                 ..-..+.|-.+|.++.+|    ++..+-+||-.+-.+++....-... .-.+.-||+.+
T Consensus       217 -----------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~d  274 (472)
T KOG0303|consen  217 -----------AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPD  274 (472)
T ss_pred             -----------CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCC
Confidence                       234567788899977676    4689999998875455433333222 22333355555

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.83  E-value=5.2e-18  Score=149.38  Aligned_cols=287  Identities=15%  Similarity=0.210  Sum_probs=184.0

Q ss_pred             ceeeccceEEEEECCCCC---eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           31 EVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~---~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      ..+|..+|+|+.|-|+.+   ++++|+.|++|.+|.+....                     ...+..+++|.       
T Consensus        50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~---------------------~~~i~~~~g~~-------  101 (764)
T KOG1063|consen   50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEY---------------------LIKIYTIQGHC-------  101 (764)
T ss_pred             ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehh---------------------eEEEEeecCcc-------
Confidence            457999999999999877   89999999999999988432                     23566778877       


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE--EEeccCCCCc-----ccCC-CC-CeEeecCCceeeE
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK--KVFDWNVHPE-----KAAG-NG-PIFGSHVSAIPKS  178 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~-----~~~~-~~-~v~~~~~~~~~~~  178 (408)
                             +.++++.-.  -....+...|+++.+||.+..+..  ..+.......     ...+ ++ .+.+.+.....+.
T Consensus       102 -------~~~~cv~a~--~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~  172 (764)
T KOG1063|consen  102 -------KECVCVVAR--SSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVD  172 (764)
T ss_pred             -------eeEEEEEee--eeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEE
Confidence                   445555311  112333379999999999665522  2221111110     1111 11 1222222222232


Q ss_pred             EccCC----Ceeeccccccc-------------CccccCCCCCceeeeceeeeccccc----------cccc-------c
Q 015363          179 YMANG----GCGERNFGCAS-------------NDSSFPPGGVSSLRLPVVVTSQETN----------LVAG-------C  224 (408)
Q Consensus       179 ~~~~~----~~l~~~~~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~-------~  224 (408)
                      .-..+    +....+.|+.+             ..++++++.|..|++|.+.-..+..          ....       .
T Consensus       173 ~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~  252 (764)
T KOG1063|consen  173 LYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE  252 (764)
T ss_pred             EeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee
Confidence            22222    33344455552             3568899999999999943222110          0000       0


Q ss_pred             c------eeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce-eeEeecCCCcccCCcCCeEEEEEcCCCCc
Q 015363          225 R------RIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCN  296 (408)
Q Consensus       225 ~------~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  296 (408)
                      .      ..++.+|..+|+++.|+|.+..|+++ .|.++.+|.-....-. ...+.  -..+.+.........|+|++ +
T Consensus       253 i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR--lGe~gg~a~GF~g~lw~~n~-~  329 (764)
T KOG1063|consen  253 IQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR--LGEVGGSAGGFWGGLWSPNS-N  329 (764)
T ss_pred             EEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE--eecccccccceeeEEEcCCC-C
Confidence            1      12236999999999999999777777 9999999988743222 22221  12233445568899999999 8


Q ss_pred             eEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECC
Q 015363          297 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       297 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~  370 (408)
                      .+++-+..|-.++|........     +        ......||...|.+++|+|.|.||++.+ |.+-++|---
T Consensus       330 ~ii~~g~~Gg~hlWkt~d~~~w-----~--------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w  391 (764)
T KOG1063|consen  330 VIIAHGRTGGFHLWKTKDKTFW-----T--------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW  391 (764)
T ss_pred             EEEEecccCcEEEEeccCccce-----e--------eccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence            8999899999999983332111     1        1223567789999999999999999986 8899998664

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1e-19  Score=168.86  Aligned_cols=223  Identities=18%  Similarity=0.264  Sum_probs=158.4

Q ss_pred             ccceeEEEEeecCCCc--EEEEEeCCCeEEEEEcCCC---cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          112 EEKINKIRWCQSANSA--LYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~--~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                      ..+-+.++|.+..++.  +||.|..||.|.+||...-   ....++..     .....|.|.       .+.|++....+
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~-----~~~h~G~V~-------gLDfN~~q~nl  131 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT-----KSKHTGPVL-------GLDFNPFQGNL  131 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh-----hcccCCcee-------eeeccccCCce
Confidence            3668899998654332  5888899999999998752   11111111     111245566       68888887733


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEIS  264 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~  264 (408)
                                 +++|+.+|.|.+|| +.+.+......     .......|.+++|+.. ..+|+++ .+|++.|||++..
T Consensus       132 -----------LASGa~~geI~iWD-lnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~  194 (1049)
T KOG0307|consen  132 -----------LASGADDGEILIWD-LNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK  194 (1049)
T ss_pred             -----------eeccCCCCcEEEec-cCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence                       49999999999999 66644322211     1234477999999976 4677778 8999999999966


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                      +..+++-      .......+..++|+|++...+++++.|.   .|.+||+|...   .+++++++|            .
T Consensus       195 ~pii~ls------~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---sP~k~~~~H------------~  253 (1049)
T KOG0307|consen  195 KPIIKLS------DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGH------------Q  253 (1049)
T ss_pred             Ccccccc------cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---Cchhhhccc------------c
Confidence            5555431      1222245778999999977788777753   79999999654   556777777            4


Q ss_pred             ceeEEEEEccCC-CEEEEe-CCCeEEEEECCCCCCceeeeeecccc
Q 015363          342 ASISDIKFARNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       342 ~~i~~~~~spdg-~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                      ..|.++.|++.+ .+|+++ .|+.|.+|+.++ ++.+..+......
T Consensus       254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW  298 (1049)
T KOG0307|consen  254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNW  298 (1049)
T ss_pred             cceeeeccCCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcc
Confidence            789999999965 788877 489999999998 7888888764443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=6.2e-19  Score=147.91  Aligned_cols=209  Identities=14%  Similarity=0.231  Sum_probs=149.2

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc--EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      .+|++++|+|..+-+++|+|..-|.|-+||+.+.+  ...+..++.+      .++|.       ++.|+|...-.    
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h------s~~Vs-------~l~F~P~n~s~----  249 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH------SGPVS-------GLKFSPANTSQ----  249 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC------Ccccc-------ceEecCCChhh----
Confidence            78999999999887899999999999999996322  1222222221      12232       56677654322    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                             +++.+.||+|++-| +.+........     .......+.++.|+.+...++.+ .=|...+||+++.+....
T Consensus       250 -------i~ssSyDGtiR~~D-~~~~i~e~v~s-----~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~  316 (498)
T KOG4328|consen  250 -------IYSSSYDGTIRLQD-FEGNISEEVLS-----LDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE  316 (498)
T ss_pred             -------eeeeccCceeeeee-ecchhhHHHhh-----cCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch
Confidence                   48899999999988 54422111111     11234567788888887777777 666999999998877655


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      .       +.-|...|++++++|..+.+||+++.|++.+|||+|....-..|+-.            ...|...|.++.|
T Consensus       317 ~-------~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls------------t~~HrrsV~sAyF  377 (498)
T KOG4328|consen  317 N-------LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS------------TLPHRRSVNSAYF  377 (498)
T ss_pred             h-------hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee------------cccccceeeeeEE
Confidence            4       45678899999999999999999999999999999975332111111            2345689999999


Q ss_pred             ccCCCEEEEe-CCCeEEEEECC
Q 015363          350 ARNGRHILSR-DYMTLKLWDIN  370 (408)
Q Consensus       350 spdg~~l~s~-~d~~v~~wd~~  370 (408)
                      ||++-.|++. -|..|+|||..
T Consensus       378 SPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  378 SPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             cCCCCceEeeccCCceEEeecc
Confidence            9977667765 58999999994

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=3.4e-19  Score=150.98  Aligned_cols=221  Identities=13%  Similarity=0.158  Sum_probs=167.1

Q ss_pred             EEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEE
Q 015363           39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI  118 (408)
Q Consensus        39 ~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v  118 (408)
                      .|++......++++|+..++|+|||+....+                       ...+.+|.            +.|++|
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~-----------------------hr~lkdh~------------stvt~v  127 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLI-----------------------HRFLKDHQ------------STVTYV  127 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHH-----------------------hhhccCCc------------ceeEEE
Confidence            3444444458999999999999999885432                       34577888            789999


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363          119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (408)
Q Consensus       119 ~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (408)
                      .+.  .++.+||+++..|.|.|..+.++.....+......       .+.       -+.+++..+.+           +
T Consensus       128 ~YN--~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq-------svR-------ll~ys~skr~l-----------L  180 (673)
T KOG4378|consen  128 DYN--NTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ-------SVR-------LLRYSPSKRFL-----------L  180 (673)
T ss_pred             Eec--CCcceeEEeccCCcEEEEecccCccccceecCCCC-------eEE-------Eeeccccccee-----------e
Confidence            995  55789999999999999999988766555443211       121       36777777765           6


Q ss_pred             cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCC
Q 015363          199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA  276 (408)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~  276 (408)
                      .+++.+|.|.+|| +..+.      +.......|..+...|+|+|....|++.  .|..|.+||++. +.....      
T Consensus       181 ~~asd~G~VtlwD-v~g~s------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~------  246 (673)
T KOG4378|consen  181 SIASDKGAVTLWD-VQGMS------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-QASTDR------  246 (673)
T ss_pred             EeeccCCeEEEEe-ccCCC------cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc-ccccce------
Confidence            7889999999999 55432      2333357899999999999988766554  899999999993 333222      


Q ss_pred             cccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC
Q 015363          277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  353 (408)
Q Consensus       277 ~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg  353 (408)
                       + ....+...++|.++| .+|++|...|.|..||+|..+   .|+.+...|            ...|++++|-|..
T Consensus       247 -l-~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k---~Pv~v~sah------------~~sVt~vafq~s~  305 (673)
T KOG4378|consen  247 -L-TYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK---APVAVRSAH------------DASVTRVAFQPSP  305 (673)
T ss_pred             -e-eecCCcceeeecCCc-eEEEeecCCceEEEEecccCC---CCceEeeec------------ccceeEEEeeecc
Confidence             1 135667899999999 999999999999999999765   456776666            4679999998764

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7.8e-18  Score=147.98  Aligned_cols=240  Identities=16%  Similarity=0.198  Sum_probs=173.2

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      ..|.+++|+..  ...||.+-.||.|-+|++..+= +..++.++.       ++.+-       .++|.+.++.      
T Consensus        26 s~I~slA~s~k--S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~-------drsIE-------~L~W~e~~RL------   83 (691)
T KOG2048|consen   26 SEIVSLAYSHK--SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPE-------DRSIE-------SLAWAEGGRL------   83 (691)
T ss_pred             cceEEEEEecc--CCceeeeccCCcEEEEccCCCceeeEEEecCC-------CCcee-------eEEEccCCeE------
Confidence            77999999754  5589999999999999999753 234444432       34454       6899966664      


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             |+.+.+|.|.-|| +...      +++.. .....+.|.+++.+|.+..++.| +||.+..++.....-....
T Consensus        84 -------FS~g~sg~i~EwD-l~~l------k~~~~-~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r  148 (691)
T KOG2048|consen   84 -------FSSGLSGSITEWD-LHTL------KQKYN-IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR  148 (691)
T ss_pred             -------EeecCCceEEEEe-cccC------ceeEE-ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe
Confidence                   9999999999999 5432      22233 25666889999999999999999 9998887877733222222


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                            .+.-..+.|.+++|+|++ ..++.|+.||.|++||..++..+..  .+.+-....      .+-..-|+++.|-
T Consensus       149 ------~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~--~~~~~d~l~------k~~~~iVWSv~~L  213 (691)
T KOG2048|consen  149 ------SLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHI--ITMQLDRLS------KREPTIVWSVLFL  213 (691)
T ss_pred             ------ecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEE--eeecccccc------cCCceEEEEEEEe
Confidence                  244456889999999999 8899999999999999999865420  111100000      0012457888888


Q ss_pred             cCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeee---eeeceeee
Q 015363          351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM---GLDNIHTL  406 (408)
Q Consensus       351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~  406 (408)
                      .|+ .|++|+ -|+|.+||... +.+++.+..|.+-..++..--+++.+   ++|+-...
T Consensus       214 rd~-tI~sgDS~G~V~FWd~~~-gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~  271 (691)
T KOG2048|consen  214 RDS-TIASGDSAGTVTFWDSIF-GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQ  271 (691)
T ss_pred             ecC-cEEEecCCceEEEEcccC-cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence            654 678886 49999999998 89999999999988888866665532   44554433

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.82  E-value=2.3e-18  Score=136.50  Aligned_cols=255  Identities=11%  Similarity=0.161  Sum_probs=177.4

Q ss_pred             eeeccceEEEEECCCC-----CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccc
Q 015363           32 VQEVDIISAIEFDKSG-----DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~-----~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  106 (408)
                      ..|.-+++.+.|.|+.     ++|||.+  ..+|||.+...+..                   .++...+..+.      
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~-------------------~~~~~~L~~~k------  145 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESR-------------------VELQSVLNNNK------  145 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCc-------------------eehhhhhccCc------
Confidence            4688899999999985     3677764  37999998754321                   11111222211      


Q ss_pred             cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE---EEEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (408)
Q Consensus       107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  183 (408)
                       .-+..+++++..|+.- +-.++.+++-|-+..|||++++..   +..+-.|        +..|+       .++|...+
T Consensus       146 -ns~~~aPlTSFDWne~-dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH--------DKEV~-------DIaf~~~s  208 (364)
T KOG0290|consen  146 -NSEFCAPLTSFDWNEV-DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH--------DKEVY-------DIAFLKGS  208 (364)
T ss_pred             -ccccCCcccccccccC-CcceeEeecccCeEEEEEEeeccccceeeEEEec--------Cccee-------EEEeccCc
Confidence             2233478999999853 345899999999999999998732   2222222        33355       78888876


Q ss_pred             CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe--cCCeEEEEe
Q 015363          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA--DDLRINLWN  260 (408)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~--~d~~i~iwd  260 (408)
                      ..+           +++.+.||.++++| ++..+....   +..- .....+...++|+++. +++|+-  +...|.+.|
T Consensus       209 ~~~-----------FASvgaDGSvRmFD-LR~leHSTI---IYE~-p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD  272 (364)
T KOG0290|consen  209 RDV-----------FASVGADGSVRMFD-LRSLEHSTI---IYED-PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD  272 (364)
T ss_pred             cce-----------EEEecCCCcEEEEE-ecccccceE---EecC-CCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence            655           68899999999999 766444221   1111 2224567788999866 677764  778999999


Q ss_pred             CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCce--ecccccccccccCCCCccccc
Q 015363          261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFFT  338 (408)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~  338 (408)
                      ++.....+.       ++.+|...|..++|.|..+..+++++.|..+.+||+.+.-.  ...|+-.+.            
T Consensus       273 iR~P~tpva-------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~------------  333 (364)
T KOG0290|consen  273 IRVPCTPVA-------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT------------  333 (364)
T ss_pred             ecCCCccee-------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh------------
Confidence            997766553       48899999999999999889999999999999999986532  111222222            


Q ss_pred             cccceeEEEEEcc-CCCEEEEeCCCeEEE
Q 015363          339 EIIASISDIKFAR-NGRHILSRDYMTLKL  366 (408)
Q Consensus       339 ~h~~~i~~~~~sp-dg~~l~s~~d~~v~~  366 (408)
                       ..+.|+.+.|++ .+.+|+.+..+++.+
T Consensus       334 -a~~EVNqi~Ws~~~~Dwiai~~~kklei  361 (364)
T KOG0290|consen  334 -AGGEVNQIQWSSSQPDWIAICFGKKLEI  361 (364)
T ss_pred             -ccceeeeeeecccCCCEEEEEecCeeeE
Confidence             236799999996 578999887656554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.82  E-value=4.4e-19  Score=138.63  Aligned_cols=277  Identities=12%  Similarity=0.133  Sum_probs=178.6

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|.+.|+++.|-.+++ |.+|..-|.|.+|.+.+.+..                       ..++.+..          
T Consensus        11 Rp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~-----------------------~~~r~~g~----------   56 (323)
T KOG0322|consen   11 RPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL-----------------------PLIRLFGR----------   56 (323)
T ss_pred             ccccchheehhhccchh-hhcccccceEEEEEeecCccc-----------------------hhhhhhcc----------
Confidence            37889999999988776 899999999999999887642                       23442221          


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCC-----c------------ccCCCCCeEee----
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP-----E------------KAAGNGPIFGS----  170 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~------------~~~~~~~v~~~----  170 (408)
                       ..|+.+.-.|.   ..+.+-++|..+.+|++..+....+.....+.     .            ...+.......    
T Consensus        57 -~~it~lq~~p~---d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D  132 (323)
T KOG0322|consen   57 -LFITNLQSIPN---DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD  132 (323)
T ss_pred             -ceeeceeecCC---cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence             55777776543   47889999999999999875443332211111     0            00010000000    


Q ss_pred             cCCceeeEEccCCC------ee--ecccccccCccccCCCCCceeeeceeeeccccc----cccccceeeccccccceEE
Q 015363          171 HVSAIPKSYMANGG------CG--ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN----LVAGCRRIYAHAHDYHINS  238 (408)
Q Consensus       171 ~~~~~~~~~~~~~~------~l--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~  238 (408)
                      ...++.+...++..      .+  ..-.......++++|.++|.+.+|| +...+..    ...+.... ...|..+|.+
T Consensus       133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd-~S~~~~~~~~~~~~kv~~~-~ash~qpvls  210 (323)
T KOG0322|consen  133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWD-LSTGDKIIQLPQSSKVESP-NASHKQPVLS  210 (323)
T ss_pred             cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEE-ccCCceeeccccccccccc-hhhccCccee
Confidence            01111122221111      00  0001122234578899999999999 6554222    11121222 2678899999


Q ss_pred             EEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCce
Q 015363          239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL  317 (408)
Q Consensus       239 i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  317 (408)
                      +.+.+.-..=++| .+..+..|+++......++-    ..+.-....|..+...||+ +++|+++.|++||+|..++...
T Consensus       211 ldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~----~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~p  285 (323)
T KOG0322|consen  211 LDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR----KEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLNP  285 (323)
T ss_pred             eeechhhcCCcCCCccccceeeeeccccCccccc----ceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCCc
Confidence            9998765555555 67778889887543322221    1122234557889999999 9999999999999999998844


Q ss_pred             ecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363          318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~  369 (408)
                          +..++-|            ++.|++++|+|+...+|+++ |.+|.+|++
T Consensus       286 ----LAVLkyH------------sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  286 ----LAVLKYH------------SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ----hhhhhhh------------hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                3666666            58999999999999999986 799999986

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.81  E-value=2.3e-18  Score=154.63  Aligned_cols=195  Identities=18%  Similarity=0.281  Sum_probs=154.7

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeee---ccCCcccccccccccc
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF---QSHEPEFDYLKSLEIE  112 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~h~~~~~~~~~~~~~  112 (408)
                      ..++|++.++-|++.+.|+..|.|.+|+++.+...                       ..|   ..|.            
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r-----------------------~sf~~~~ah~------------  493 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR-----------------------KSFGDSPAHK------------  493 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeee-----------------------cccccCcccc------------
Confidence            67899999999999999999999999999887532                       223   3565            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      .+|++++.  +.-++.+++++.+|.+++||......+.....                                      
T Consensus       494 ~~V~gla~--D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l--------------------------------------  533 (910)
T KOG1539|consen  494 GEVTGLAV--DGTNRLLVSAGADGILKFWDFKKKVLKKSLRL--------------------------------------  533 (910)
T ss_pred             CceeEEEe--cCCCceEEEccCcceEEEEecCCcceeeeecc--------------------------------------
Confidence            77999998  55577899999999999999987764332111                                      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                                                            +  ..+.++..+.....++.+ +|-.|+++|..+.+ ..+  
T Consensus       534 --------------------------------------~--~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-vvR--  570 (910)
T KOG1539|consen  534 --------------------------------------G--SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-VVR--  570 (910)
T ss_pred             --------------------------------------C--CCcceeeeeehhhhhhhhcCceeEEEEEchhhh-hhH--
Confidence                                                  0  234455666667788888 99999999998433 332  


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                           .+.+|...|+.++||||| ++|++++.|++|++||+.++..++    .+.-.             .+...+.|||
T Consensus       571 -----~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~lID----~~~vd-------------~~~~sls~SP  627 (910)
T KOG1539|consen  571 -----EFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTLID----GLLVD-------------SPCTSLSFSP  627 (910)
T ss_pred             -----HhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcceee----eEecC-------------CcceeeEECC
Confidence                 378999999999999999 999999999999999999997663    22222             4688999999


Q ss_pred             CCCEEEEeC-C-CeEEEEECCC
Q 015363          352 NGRHILSRD-Y-MTLKLWDINM  371 (408)
Q Consensus       352 dg~~l~s~~-d-~~v~~wd~~~  371 (408)
                      +|.+||+.. | ..|++|--..
T Consensus       628 ngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  628 NGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             CCCEEEEEEecCceEEEEEchh
Confidence            999999994 6 8999997544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.2e-17  Score=129.19  Aligned_cols=250  Identities=15%  Similarity=0.156  Sum_probs=167.0

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      ..|.+-+++|.+++|+.|..+|.|-+..++.....             -+.+|.-..+-.+++|.            .+|
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-------------sa~~~gk~~iv~eqahd------------gpi   65 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-------------SAEPPGKLKIVPEQAHD------------GPI   65 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-------------ccCCCCCcceeeccccC------------CCe
Confidence            45677789999999999999999999998754321             11222333445568998            789


Q ss_pred             eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (408)
                      ..++|.    ..+|++|+ ||.|+-|..+......-                                            
T Consensus        66 y~~~f~----d~~Lls~g-dG~V~gw~W~E~~es~~--------------------------------------------   96 (325)
T KOG0649|consen   66 YYLAFH----DDFLLSGG-DGLVYGWEWNEEEESLA--------------------------------------------   96 (325)
T ss_pred             eeeeee----hhheeecc-CceEEEeeehhhhhhcc--------------------------------------------
Confidence            999995    23666655 59999998865432110                                            


Q ss_pred             ccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecC
Q 015363          196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK  274 (408)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  274 (408)
                                .-++|. +..        +.+.- .-.-..|+++-..|..+.++.+ .|+.++-||++ .++....    
T Consensus        97 ----------~K~lwe-~~~--------P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~----  151 (325)
T KOG0649|consen   97 ----------TKRLWE-VKI--------PMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQRE----  151 (325)
T ss_pred             ----------chhhhh-hcC--------ccccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEE----
Confidence                      001222 110        00000 0111458889999887766666 99999999999 4444443    


Q ss_pred             CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc-cceeEEEEEccCC
Q 015363          275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI-IASISDIKFARNG  353 (408)
Q Consensus       275 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~spdg  353 (408)
                         +.+|.+.+.++.-.... ..+.+|+.||++++||+++++.+    +.++..+.+++   ...| ..+|.+++-+  .
T Consensus       152 ---~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v----~~ie~yk~~~~---lRp~~g~wigala~~--e  218 (325)
T KOG0649|consen  152 ---YRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHV----SMIEPYKNPNL---LRPDWGKWIGALAVN--E  218 (325)
T ss_pred             ---EcCCcceeeeeeecccC-cceeecCCCccEEEEecccccee----EEeccccChhh---cCcccCceeEEEecc--C
Confidence               78999999999985555 56889999999999999999765    44444332211   2222 2467777664  5


Q ss_pred             CEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeee
Q 015363          354 RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGL  400 (408)
Q Consensus       354 ~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (408)
                      .+|++|....+.+|+++. .++..+|.-.  .+...+.|+++.++..
T Consensus       219 dWlvCGgGp~lslwhLrs-se~t~vfpip--a~v~~v~F~~d~vl~~  262 (325)
T KOG0649|consen  219 DWLVCGGGPKLSLWHLRS-SESTCVFPIP--ARVHLVDFVDDCVLIG  262 (325)
T ss_pred             ceEEecCCCceeEEeccC-CCceEEEecc--cceeEeeeecceEEEe
Confidence            799999888999999997 6887777653  2334444555555444

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.5e-17  Score=151.16  Aligned_cols=234  Identities=13%  Similarity=0.179  Sum_probs=169.9

Q ss_pred             ccee-eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQ-EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~-h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      +.+. +...|.+++..  +.+|++|+.+++|.+|.+..++..                       ..+..-+        
T Consensus        50 ~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~-----------------------~iL~Rft--------   96 (933)
T KOG1274|consen   50 ETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED-----------------------TILARFT--------   96 (933)
T ss_pred             chhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc-----------------------ceeeeee--------
Confidence            4455 78888888864  558999999999999998877531                       1112222        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          -++++++++  .+|+++|.|+.|-.|++-++........+..+..        +|.       .+.++|++..+  
T Consensus        97 ----lp~r~~~v~--g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a--------pVl-------~l~~~p~~~fL--  153 (933)
T KOG1274|consen   97 ----LPIRDLAVS--GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA--------PVL-------QLSYDPKGNFL--  153 (933)
T ss_pred             ----ccceEEEEe--cCCcEEEeecCceeEEEEeccccchheeecccCC--------cee-------eeeEcCCCCEE--
Confidence                568999995  6699999999999999999998877777777643        455       78999999998  


Q ss_pred             ccccccCccccCCCCCceeeeceeeecccccccccc-ceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGC-RRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                                ++.+.||.|++|+ +........... .+..-......+..++|+|++..|+.. .|+.|++|+......
T Consensus       154 ----------Avss~dG~v~iw~-~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~  222 (933)
T KOG1274|consen  154 ----------AVSSCDGKVQIWD-LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL  222 (933)
T ss_pred             ----------EEEecCceEEEEE-cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence                      9999999999999 554222111111 011101113456778999997666665 999999999986555


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      .+.+      ....+...+..++|+|+| .+||+++.||.|.|||..+-.      +    |+.          ...|.+
T Consensus       223 ~f~L------r~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~------~----~~~----------~~~Vc~  275 (933)
T KOG1274|consen  223 QFKL------RDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE------R----HEF----------KRAVCC  275 (933)
T ss_pred             heee------cccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch------h----ccc----------cceeEE
Confidence            4443      123344558999999999 999999999999999998732      1    211          257999


Q ss_pred             EEEccCCCEEE
Q 015363          347 IKFARNGRHIL  357 (408)
Q Consensus       347 ~~~spdg~~l~  357 (408)
                      ++|.|+..-|-
T Consensus       276 ~aw~p~~n~it  286 (933)
T KOG1274|consen  276 EAWKPNANAIT  286 (933)
T ss_pred             EecCCCCCeeE
Confidence            99999876543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2e-18  Score=148.26  Aligned_cols=249  Identities=20%  Similarity=0.254  Sum_probs=163.1

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      +..+|.+.|+|++|+.+|.+|++|+.|-.+.|||.-..+.                      +...-.+|.         
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------------lhsI~TgHt---------   93 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------------LHSISTGHT---------   93 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------------eeeeecccc---------
Confidence            5678999999999999999999999999999999653321                      122346787         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         +.|.++.|.|..++..+++|+.|..|+++|+...+....-..                                   
T Consensus        94 ---aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~-----------------------------------  135 (758)
T KOG1310|consen   94 ---ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG-----------------------------------  135 (758)
T ss_pred             ---cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC-----------------------------------
Confidence               889999999998889999999999999999985432110000                                   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCce
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                   ..-+.+.                   ...|...|..++..|++ ..|.++ .||+|+-+|++....+
T Consensus       136 -------------~~~~~~~-------------------~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c  183 (758)
T KOG1310|consen  136 -------------MEETTRC-------------------WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC  183 (758)
T ss_pred             -------------ccchhhh-------------------hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence                         0001111                   25677888889999998 666677 9999999999964443


Q ss_pred             eeEeec--CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccc--cccccC-CCCcccccccc-
Q 015363          268 FNIVDV--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL--FEEQEA-PGTRSFFTEII-  341 (408)
Q Consensus       268 ~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~h~-  341 (408)
                      ..-...  ....+...--...++..+|..+.+||+|+.|-..++||.+......+.-.+  ...... .-...+..+|. 
T Consensus       184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk  263 (758)
T KOG1310|consen  184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK  263 (758)
T ss_pred             CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence            221100  000111122345789999999999999999999999996532110000000  000000 00011111221 


Q ss_pred             ----------ceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeee
Q 015363          342 ----------ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       342 ----------~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~  379 (408)
                                ..++-++|+|+|.-|+.. +...|+++|+.....+...+
T Consensus       264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence                      125678999999866655 44599999999754444433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=6.9e-18  Score=136.70  Aligned_cols=203  Identities=17%  Similarity=0.302  Sum_probs=147.7

Q ss_pred             CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCc
Q 015363           48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA  127 (408)
Q Consensus        48 ~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~  127 (408)
                      ..+|++...|.|+|||..++.                       .+..|+++.            ..++.++|.......
T Consensus        41 ~~vav~lSngsv~lyd~~tg~-----------------------~l~~fk~~~------------~~~N~vrf~~~ds~h   85 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ-----------------------LLEEFKGPP------------ATTNGVRFISCDSPH   85 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh-----------------------hhheecCCC------------CcccceEEecCCCCC
Confidence            568999999999999988765                       356788888            668999997532345


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCcee
Q 015363          128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL  207 (408)
Q Consensus       128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  207 (408)
                      .+.+|+.||+|++||++.......+....++                                                 
T Consensus        86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-------------------------------------------------  116 (376)
T KOG1188|consen   86 GVISCSSDGTVRLWDIRSQAESARISWTQQS-------------------------------------------------  116 (376)
T ss_pred             eeEEeccCCeEEEEEeecchhhhheeccCCC-------------------------------------------------
Confidence            7999999999999999876544322221110                                                 


Q ss_pred             eeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-----cCCeEEEEeCCCCCceeeEeecCCCcccCCc
Q 015363          208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDLT  282 (408)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  282 (408)
                                               ..+..+++.+..++++++|     .+-.|.+||++...+.+..+      ...|.
T Consensus       117 -------------------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~  165 (376)
T KOG1188|consen  117 -------------------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHN  165 (376)
T ss_pred             -------------------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhcc
Confidence                                     1344566666566677765     47789999999777644432      57899


Q ss_pred             CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC-CEEEEe-C
Q 015363          283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSR-D  360 (408)
Q Consensus       283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg-~~l~s~-~  360 (408)
                      ..|++++|+|..+++|++|+.||.|.|||++..... .++...-.+            .+.|..+.|+.++ +.|.+- .
T Consensus       166 DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee-DaL~~viN~------------~sSI~~igw~~~~ykrI~clTH  232 (376)
T KOG1188|consen  166 DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE-DALLHVINH------------GSSIHLIGWLSKKYKRIMCLTH  232 (376)
T ss_pred             CcceeEEecCCCCCeEEeecccceEEeeecCCCcch-hhHHHhhcc------------cceeeeeeeecCCcceEEEEEc
Confidence            999999999999999999999999999999876332 222222222            3679999999887 234444 4


Q ss_pred             CCeEEEEECCCCCCceeee
Q 015363          361 YMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       361 d~~v~~wd~~~~~~~~~~~  379 (408)
                      ..+..+|+++. +.+...+
T Consensus       233 ~Etf~~~ele~-~~~~~~~  250 (376)
T KOG1188|consen  233 METFAIYELED-GSEETWL  250 (376)
T ss_pred             cCceeEEEccC-CChhhcc
Confidence            68999999986 4544433

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=2.6e-18  Score=138.42  Aligned_cols=260  Identities=18%  Similarity=0.246  Sum_probs=178.9

Q ss_pred             eeccceEEEEECCC----CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           33 QEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        33 ~h~~~V~~~~~s~~----~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      .|...-..++|+-+    ..+||.|+.-|.|+|.|+..++.                       ...+.+|.        
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-----------------------~~~~~ghG--------  135 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-----------------------SKNYRGHG--------  135 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-----------------------ccceeccC--------
Confidence            36666778888754    34899999999999999987764                       35688888        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          ..|+.+.++|... +++++++.|.+|++|++++..++.++-+-...     .+.|.       ++.|+++|..+  
T Consensus       136 ----~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH-----rdeVL-------SvD~~~~gd~i--  196 (385)
T KOG1034|consen  136 ----GSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH-----RDEVL-------SVDFSLDGDRI--  196 (385)
T ss_pred             ----ccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccc-----cCcEE-------EEEEcCCCCee--
Confidence                6799999998744 59999999999999999999999887654322     33455       79999999998  


Q ss_pred             ccccccCccccCCCCCceeeeceeeecccccc------------cc-------cccee--eccccccceEEEEeCCCCCE
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNL------------VA-------GCRRI--YAHAHDYHINSISNNSDGET  247 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------~~-------~~~~~--~~~~~~~~v~~i~~~~~~~~  247 (408)
                                ++++.|.++++|+ +...+...            ..       .....  ....|...|.|+.|-  |++
T Consensus       197 ----------~ScGmDhslk~W~-l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~  263 (385)
T KOG1034|consen  197 ----------ASCGMDHSLKLWR-LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF  263 (385)
T ss_pred             ----------eccCCcceEEEEe-cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhh
Confidence                      9999999999999 54211110            00       00000  113455556666554  466


Q ss_pred             EEEe-cCCeEEEEeCCCCCceeeEeecCCC--------cccCCcCCeEE--EEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363          248 FISA-DDLRINLWNLEISNQSFNIVDVKPA--------NMEDLTEVITS--AEFHPTHCNMLAYSSSKGSIRLIDMRQSA  316 (408)
Q Consensus       248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~--~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  316 (408)
                      +++= -++.|..|....-++.+.  ++++.        ++.-....++-  .+|+|-+ +.||.|...|.|.+||++...
T Consensus       264 ilSkscenaI~~w~pgkl~e~~~--~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~e  340 (385)
T KOG1034|consen  264 ILSKSCENAIVCWKPGKLEESIH--NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNE  340 (385)
T ss_pred             eeecccCceEEEEecchhhhhhh--ccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCC
Confidence            7764 678999998732222211  11111        12222233443  4566777 899999999999999999765


Q ss_pred             eecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECC
Q 015363          317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDIN  370 (408)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~  370 (408)
                      ..  ...++..+.          ....|...+||.||.+|+.. +|++|.-||..
T Consensus       341 p~--~~ttl~~s~----------~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  341 PP--KCTTLTHSK----------SGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             Cc--cCceEEecc----------ccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            32  112222221          13679999999999988876 67999999864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.79  E-value=1.1e-17  Score=137.92  Aligned_cols=229  Identities=13%  Similarity=0.222  Sum_probs=166.1

Q ss_pred             ccceeeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           29 GEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        29 ~~~~~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      +..-+|+++|..++|+| +...||+||.|.+|.||++..+...                .+-.+.+..+.+|.       
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~----------------~~ltepvv~L~gH~-------  131 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT----------------RDLTEPVVELYGHQ-------  131 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccc----------------cCcccceEEEeecc-------
Confidence            34568999999999999 4678999999999999998766532                22334667889998       


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                           .+|.-|.|+|... +.|++++.|++|.+|++.+++....+. |        ...++       ++.|+.+|..+ 
T Consensus       132 -----rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-h--------pd~i~-------S~sfn~dGs~l-  188 (472)
T KOG0303|consen  132 -----RRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-H--------PDMVY-------SMSFNRDGSLL-  188 (472)
T ss_pred             -----eeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-C--------CCeEE-------EEEeccCCcee-
Confidence                 7899999999765 489999999999999999998777665 2        23455       78999999998 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeecccccc-ceEEEEeCCCCCEEEEe----cCCeEEEEeCC
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY-HINSISNNSDGETFISA----DDLRINLWNLE  262 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~----~d~~i~iwd~~  262 (408)
                                 ++...|+.|++|| ....+....+       .+|.+ .-..+-|-.++.++.+|    ++..+-+||..
T Consensus       189 -----------~TtckDKkvRv~d-pr~~~~v~e~-------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  189 -----------CTTCKDKKVRVID-PRRGTVVSEG-------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             -----------eeecccceeEEEc-CCCCcEeeec-------ccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence                       9999999999999 5443322221       33432 22344577788877776    58999999988


Q ss_pred             CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc
Q 015363          263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  328 (408)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  328 (408)
                      .-...+...+     +.. ...|.---|.|+..-+.++|-.|+.|+-|.+.........+.+|...
T Consensus       250 nl~eP~~~~e-----lDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~  309 (472)
T KOG0303|consen  250 NLEEPIALQE-----LDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK  309 (472)
T ss_pred             cccCcceeEE-----ecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence            6555544322     332 45566677888884445566679999999998765332333444433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.6e-17  Score=139.77  Aligned_cols=242  Identities=15%  Similarity=0.183  Sum_probs=171.4

Q ss_pred             eccceEEEEECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccc--cccccc-cccCCCccceeeeeccCCcccccc---
Q 015363           34 EVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRD--LEMMDY-SMSRHPEFRYKTEFQSHEPEFDYL---  106 (408)
Q Consensus        34 h~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~-~~~~~p~~~~~~~~~~h~~~~~~~---  106 (408)
                      ...+|.+..|.|+|. .+++++...-...||+.+.+.. ...+.  ++.... ....+|...++ .+.|+.+-+..+   
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~fi-a~~G~~G~I~lLhak  333 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSNFI-AIAGNNGHIHLLHAK  333 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCCeE-EEcccCceEEeehhh
Confidence            357899999999998 8999999999999999887643 11111  121111 22334444433 355555544433   


Q ss_pred             -----cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc
Q 015363          107 -----KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA  181 (408)
Q Consensus       107 -----~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  181 (408)
                           .++..++.|..++|+  .+++.|++++.+|.|.+||++...++..+.-.         |.+.     ++.++.++
T Consensus       334 T~eli~s~KieG~v~~~~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~---------G~v~-----gts~~~S~  397 (514)
T KOG2055|consen  334 TKELITSFKIEGVVSDFTFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDD---------GSVH-----GTSLCISL  397 (514)
T ss_pred             hhhhhheeeeccEEeeEEEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeec---------Cccc-----eeeeeecC
Confidence                 345788999999996  56889999999999999999999877766543         2232     23678889


Q ss_pred             CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe---cCCeEEE
Q 015363          182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINL  258 (408)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~d~~i~i  258 (408)
                      +|.++            ++|+..|.|.+|| ....-.....++++.+ ..-...|++++|+|+.++||.+   .+..+++
T Consensus       398 ng~yl------------A~GS~~GiVNIYd-~~s~~~s~~PkPik~~-dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL  463 (514)
T KOG2055|consen  398 NGSYL------------ATGSDSGIVNIYD-GNSCFASTNPKPIKTV-DNLTTAITSLQFNHDAQILAIASRVKKNALRL  463 (514)
T ss_pred             CCceE------------EeccCcceEEEec-cchhhccCCCCchhhh-hhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence            99887            9999999999999 4433222333444443 4445679999999999999976   5788888


Q ss_pred             EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363          259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  313 (408)
                      -.+. +...+.-++    +....-+.|+||+|+|.+ .+||.|..+|++.+|.+.
T Consensus       464 VHvP-S~TVFsNfP----~~n~~vg~vtc~aFSP~s-G~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  464 VHVP-SCTVFSNFP----TSNTKVGHVTCMAFSPNS-GYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             Eecc-ceeeeccCC----CCCCcccceEEEEecCCC-ceEEeecCCCceeeEeec
Confidence            8876 333332211    123334668999999998 899999999999999864

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.79  E-value=6.4e-17  Score=128.40  Aligned_cols=284  Identities=15%  Similarity=0.240  Sum_probs=184.0

Q ss_pred             cceEEEEECC--C-CCeEEEeec----CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           36 DIISAIEFDK--S-GDHLATGDR----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        36 ~~V~~~~~s~--~-~~~l~sg~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      =.+.++.|+.  + +.+||.|+.    .+.|.|-.++....                                ++....+
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~--------------------------------e~~~~a~   92 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG--------------------------------ELVEDAN   92 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC--------------------------------ceeccCC
Confidence            4578999984  3 558999973    45677766553221                                1111122


Q ss_pred             cccccceeEEEEeecCCCc---EEEEEeCCCeEEEEEcCCC--cEEEE--eccCCCCcccCCCCCeEeecCCceeeEEcc
Q 015363          109 LEIEEKINKIRWCQSANSA---LYLLSTNDKTIKLWKVQEK--KVKKV--FDWNVHPEKAAGNGPIFGSHVSAIPKSYMA  181 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~---~l~~~~~d~~i~vwd~~~~--~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  181 (408)
                      +++.-+++.+.|.|++.|.   +||++  +..+|+|.+...  +....  +..+.....   .+++.       +..|+.
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~---~aPlT-------SFDWne  160 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEF---CAPLT-------SFDWNE  160 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCccccc---CCccc-------cccccc
Confidence            3334789999999986543   34443  348999998743  22211  111111100   11111       334443


Q ss_pred             -CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEE
Q 015363          182 -NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINL  258 (408)
Q Consensus       182 -~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~i  258 (408)
                       +-++            +.+.+-|.+..+|| +...    ....+++.+-+|++.|..|+|...+ +.||+. .||.|++
T Consensus       161 ~dp~~------------igtSSiDTTCTiWd-ie~~----~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRm  223 (364)
T KOG0290|consen  161 VDPNL------------IGTSSIDTTCTIWD-IETG----VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRM  223 (364)
T ss_pred             CCcce------------eEeecccCeEEEEE-Eeec----cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEE
Confidence             2233            48889999999999 5432    1111233357999999999999876 566666 8999999


Q ss_pred             EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC-CeEEEEEcCCCceecccccccccccCCCCcccc
Q 015363          259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF  337 (408)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (408)
                      ||++......-+++     -.....+...++|++..++++|+-..| ..|.|.|+|...   .++..+++|         
T Consensus       224 FDLR~leHSTIIYE-----~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~---tpva~L~~H---------  286 (364)
T KOG0290|consen  224 FDLRSLEHSTIIYE-----DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC---TPVARLRNH---------  286 (364)
T ss_pred             EEecccccceEEec-----CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC---cceehhhcC---------
Confidence            99996555444332     112256688999999998999987765 579999999754   345666666         


Q ss_pred             ccccceeEEEEEccC-CCEEEEeC-CCeEEEEECCCCC-----CceeeeeecccccceEEecCCCeeeee
Q 015363          338 TEIIASISDIKFARN-GRHILSRD-YMTLKLWDINMDS-----GPVATFQVHEHLRPKVMHSSKNYFMGL  400 (408)
Q Consensus       338 ~~h~~~i~~~~~spd-g~~l~s~~-d~~v~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (408)
                         .+.|+.++|.|. ...|.+++ |..+.+||+....     .++-.+....+.....++..++|.+++
T Consensus       287 ---~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai  353 (364)
T KOG0290|consen  287 ---QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAI  353 (364)
T ss_pred             ---cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEE
Confidence               589999999996 45788875 5999999997532     244455554455667777888888776

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.4e-17  Score=133.08  Aligned_cols=242  Identities=10%  Similarity=0.115  Sum_probs=150.5

Q ss_pred             cceeeccceEEEEECCC--CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           30 EEVQEVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      .-..|.+.|..+.|.+-  |+.+|+++.|+++.||.-.........              -.+...+.+....       
T Consensus        54 ~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~--------------~~Wv~~ttl~Dsr-------  112 (361)
T KOG2445|consen   54 SWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHG--------------RRWVRRTTLVDSR-------  112 (361)
T ss_pred             eEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccc--------------ceeEEEEEeecCC-------
Confidence            34579999999999763  999999999999999986422210000              0122233344333       


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc-ccCCCCCeEeecCCceeeEEccCCCee
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE-KAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                           ..|++|.|.|..-|-.+|+++.||.+|||+.-...-...-....... ...+.+.   ......++.|+|.... 
T Consensus       113 -----ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~---~~~~~~CvsWn~sr~~-  183 (361)
T KOG2445|consen  113 -----SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK---NKQPCFCVSWNPSRMH-  183 (361)
T ss_pred             -----cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc---ccCcceEEeecccccc-
Confidence                 77999999998889899999999999999876432221111110000 0000000   0111226777754211 


Q ss_pred             ecccccccCccccCCCCC-----ceeeeceeeeccccccccccceeeccccccceEEEEeCCCC----CEEEEe-cCCeE
Q 015363          187 ERNFGCASNDSSFPPGGV-----SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG----ETFISA-DDLRI  256 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----~~l~~~-~d~~i  256 (408)
                              ...++.|+.+     +.+.+|. ... .. ........ +..|..+|+.|+|.|+-    .+||++ .|| |
T Consensus       184 --------~p~iAvgs~e~a~~~~~~~Iye-~~e-~~-rKw~kva~-L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v  250 (361)
T KOG2445|consen  184 --------EPLIAVGSDEDAPHLNKVKIYE-YNE-NG-RKWLKVAE-LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-V  250 (361)
T ss_pred             --------CceEEEEcccCCccccceEEEE-ecC-Cc-ceeeeehh-cCCCCCcceeeeeccccCCceeeEEEeecCc-E
Confidence                    1112443333     4777776 211 11 11112222 36899999999999973    567888 889 9


Q ss_pred             EEEeCCCCCcee-----------eEeec-CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          257 NLWNLEISNQSF-----------NIVDV-KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       257 ~iwd~~~~~~~~-----------~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                      +||.+......+           .-+++ +...+.+|++.|..+.|+-.| ..|++.+.||.|++|...-.
T Consensus       251 ~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  251 RIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             EEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhhh
Confidence            999997311000           00111 113478899999999999999 99999999999999976543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=7.9e-17  Score=129.31  Aligned_cols=274  Identities=12%  Similarity=0.144  Sum_probs=179.7

Q ss_pred             cCcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccc
Q 015363           12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR   91 (408)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~   91 (408)
                      +....|+|... +  ......+|..+|+|++||++|+.|+|+|.|..|.+||+..+...                     
T Consensus        45 G~vvI~D~~T~-~--iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l---------------------  100 (405)
T KOG1273|consen   45 GRVVIYDFDTF-R--IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL---------------------  100 (405)
T ss_pred             CcEEEEEcccc-c--hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce---------------------
Confidence            34567888763 2  23345689999999999999999999999999999999877531                     


Q ss_pred             eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeec
Q 015363           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (408)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (408)
                        ..+             ...++|....|+|.... .++++-.+..-.+-++..... ..+.....       +...   
T Consensus       101 --~ri-------------rf~spv~~~q~hp~k~n-~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d-------~dln---  153 (405)
T KOG1273|consen  101 --KRI-------------RFDSPVWGAQWHPRKRN-KCVATIMEESPVVIDFSDPKH-SVLPKDDD-------GDLN---  153 (405)
T ss_pred             --eEE-------------EccCccceeeeccccCC-eEEEEEecCCcEEEEecCCce-eeccCCCc-------cccc---
Confidence              111             12277999999987655 444444444455555554322 11111111       0000   


Q ss_pred             CCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe
Q 015363          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA  251 (408)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  251 (408)
                      .......|.+.|+++            ++|...|.+.+++ ...      .+|+..+.......|..+.++..|+.|+.-
T Consensus       154 ~sas~~~fdr~g~yI------------itGtsKGkllv~~-a~t------~e~vas~rits~~~IK~I~~s~~g~~liiN  214 (405)
T KOG1273|consen  154 SSASHGVFDRRGKYI------------ITGTSKGKLLVYD-AET------LECVASFRITSVQAIKQIIVSRKGRFLIIN  214 (405)
T ss_pred             cccccccccCCCCEE------------EEecCcceEEEEe-cch------heeeeeeeechheeeeEEEEeccCcEEEEe
Confidence            000123578888888            9999999999988 332      233333311223678889999999999998


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCC-Cccc--CCcCCeEEEEEcCCCCceEEEEe-CCCeEEEEEcCCCceecccccccc
Q 015363          252 -DDLRINLWNLEISNQSFNIVDVKP-ANME--DLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFE  326 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~~~~-~~~~--~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~  326 (408)
                       .|+.|+.|+++.-...-+-....+ ..+.  -....=.+++|+.+| .++++++ ....++||....|.++    +.+.
T Consensus       215 tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~GsLV----KILh  289 (405)
T KOG1273|consen  215 TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSIGSLV----KILH  289 (405)
T ss_pred             cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCCccee----eeec
Confidence             999999999872111100000000 0000  011223578999999 5655554 4578999999999887    7887


Q ss_pred             cccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363          327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       327 ~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~  371 (408)
                      |.+           .....++.|+|-...|++-..|.|++|....
T Consensus       290 G~k-----------gE~l~DV~whp~rp~i~si~sg~v~iw~~~~  323 (405)
T KOG1273|consen  290 GTK-----------GEELLDVNWHPVRPIIASIASGVVYIWAVVQ  323 (405)
T ss_pred             CCc-----------hhheeecccccceeeeeeccCCceEEEEeec
Confidence            774           2457889999998888888779999998864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=4.5e-18  Score=146.48  Aligned_cols=271  Identities=15%  Similarity=0.186  Sum_probs=178.5

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|.+.|.+++|.|....|++|+.||+|++|++......               -.-+.+.+.+|++|.          
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------------~~~~~epi~tfraH~----------  344 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------------AEKDVEPILTFRAHE----------  344 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------cccceeeeEEEeccc----------
Confidence            4569999999999999999999999999999999432110               112455678899999          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc----------EEEEeccCCCCcccCCCCCeEeecCCceeeEEc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----------VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM  180 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  180 (408)
                        ++|.|++..  ++++.+++|+-||+|+.|++-...          ....+.++        .+.++       .++++
T Consensus       345 --gPVl~v~v~--~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh--------tdavw-------~l~~s  405 (577)
T KOG0642|consen  345 --GPVLCVVVP--SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH--------TDAVW-------LLALS  405 (577)
T ss_pred             --CceEEEEec--CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecc--------cccee-------eeeec
Confidence              789999995  558899999999999999765211          01111111        22333       56677


Q ss_pred             cCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEE
Q 015363          181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINL  258 (408)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~i  258 (408)
                      +....|            ++++.||++++|+ ......     |.......| +.-.++++-... ...++. .-+.--+
T Consensus       406 ~~~~~L------------lscs~DgTvr~w~-~~~~~~-----~~f~~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~  466 (577)
T KOG0642|consen  406 STKDRL------------LSCSSDGTVRLWE-PTEESP-----CTFGEPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSI  466 (577)
T ss_pred             ccccce------------eeecCCceEEeec-cCCcCc-----cccCCcccc-CCcceEeeccchhHhhhhhcccccccc
Confidence            766666            9999999999999 433222     111001112 223344443222 111111 2233333


Q ss_pred             EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc
Q 015363          259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT  338 (408)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (408)
                      ++.+. .+.+.+++............+..+.++|.+ .+.+++..|+.|+++|..++..+    .....|          
T Consensus       467 ~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l----~s~~a~----------  530 (577)
T KOG0642|consen  467 DDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKIL----HSMVAH----------  530 (577)
T ss_pred             hhhhh-hhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceecccccccccc----hheeec----------
Confidence            33332 222222221111111123456788999999 89999999999999999998664    555555          


Q ss_pred             cccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecc
Q 015363          339 EIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       339 ~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                        ...++++++.|+|.+|++++ |+.+++|.+.. ..++.....|.
T Consensus       531 --~~svtslai~~ng~~l~s~s~d~sv~l~kld~-k~~~~es~~~r  573 (577)
T KOG0642|consen  531 --KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV-KTCVLESTAHR  573 (577)
T ss_pred             --cceecceeecCCCceEEeecCCceeehhhccc-hheeecccccc
Confidence              47899999999999999996 79999999986 56666666654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=3.8e-17  Score=131.56  Aligned_cols=277  Identities=10%  Similarity=0.123  Sum_probs=173.7

Q ss_pred             ccceEEEEEC-------CCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeecc--CCccccc
Q 015363           35 VDIISAIEFD-------KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS--HEPEFDY  105 (408)
Q Consensus        35 ~~~V~~~~~s-------~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--h~~~~~~  105 (408)
                      ...|..-+|=       |+..++|+.+++.-|.|||.-+++..                       ..+++  |..++  
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lr-----------------------aSy~~ydh~de~--  158 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLR-----------------------ASYRAYDHQDEY--  158 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccc-----------------------cchhhhhhHHhh--
Confidence            4556666664       56789999999999999999888642                       22222  22111  


Q ss_pred             ccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcC-CCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC
Q 015363          106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (408)
Q Consensus       106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  184 (408)
                             ....+++|+|+  |++|++ +..+.|+++|+. .+.--.+....... .+...+.+.       +++++|...
T Consensus       159 -------taAhsL~Fs~D--Geqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~-k~gq~giis-------c~a~sP~~~  220 (406)
T KOG2919|consen  159 -------TAAHSLQFSPD--GEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKG-KFGQKGIIS-------CFAFSPMDS  220 (406)
T ss_pred             -------hhheeEEecCC--CCeEee-cccceEEEeeccCCCCCCcchhhhhcc-cccccceee-------eeeccCCCC
Confidence                   33568999654  887755 667899999994 44322211111100 011112222       578888654


Q ss_pred             -eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeC
Q 015363          185 -CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNL  261 (408)
Q Consensus       185 -~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~  261 (408)
                       ++            +.++....+-+|. -      ....+... +.+|.+.|+.+.|.++|+.|.+|  .|..|..||+
T Consensus       221 ~~~------------a~gsY~q~~giy~-~------~~~~pl~l-lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi  280 (406)
T KOG2919|consen  221 KTL------------AVGSYGQRVGIYN-D------DGRRPLQL-LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI  280 (406)
T ss_pred             cce------------eeecccceeeeEe-c------CCCCceee-ecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence             44            6777777766655 1      11233344 37999999999999999999998  6899999999


Q ss_pred             CCCCceeeEeecCCCcccCCcC-CeEE--EEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc
Q 015363          262 EISNQSFNIVDVKPANMEDLTE-VITS--AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT  338 (408)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~-~v~~--~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (408)
                      +..+..+-.       +..|.+ .-..  ....|++ ++|++|+.||.|++||++.-..   ++..+..+          
T Consensus       281 R~~~~pv~~-------L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn---~~sv~~~~----------  339 (406)
T KOG2919|consen  281 RYSRDPVYA-------LERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGN---EVSVTGNY----------  339 (406)
T ss_pred             hhccchhhh-------hhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCC---cccccccc----------
Confidence            976654422       334433 1123  4556889 9999999999999999987321   11333333          


Q ss_pred             cccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeee-cccccceEEecCCCee
Q 015363          339 EIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV-HEHLRPKVMHSSKNYF  397 (408)
Q Consensus       339 ~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  397 (408)
                        +..++.++++|--.++++++...+.-..-+.+++....++. +..-...++..+.+..
T Consensus       340 --sd~vNgvslnP~mpilatssGqr~f~~~~dD~ge~~~el~~~ad~n~~qlw~~y~~a~  397 (406)
T KOG2919|consen  340 --SDTVNGVSLNPIMPILATSSGQRIFKYPKDDNGELETELEEEADENEKQLWTGYVSAL  397 (406)
T ss_pred             --cccccceecCcccceeeeccCceeecCCCcccccccccccchhhhhhhheeeeecccc
Confidence              57899999999978888887655544433322333322222 2223556666665554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.77  E-value=6.3e-17  Score=142.33  Aligned_cols=251  Identities=15%  Similarity=0.189  Sum_probs=161.3

Q ss_pred             ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccccee
Q 015363           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  116 (408)
                      .|+.++|-|||..|+.+..+ .+.|||...+.                       .++++++|.            +.|.
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~-----------------------llqtLKgHK------------DtVy   57 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGT-----------------------LLQPLKGHK------------DTVY   57 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcc-----------------------ccccccccc------------ceEE
Confidence            89999999999988877544 89999998776                       467899999            7899


Q ss_pred             EEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCc
Q 015363          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND  196 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (408)
                      +++|+  .||++||+|+.|..|.+|.-+-.-..+   ...       ...+.       ++.|+|-...+          
T Consensus        58 cVAys--~dGkrFASG~aDK~VI~W~~klEG~Lk---YSH-------~D~IQ-------CMsFNP~~h~L----------  108 (1081)
T KOG1538|consen   58 CVAYA--KDGKRFASGSADKSVIIWTSKLEGILK---YSH-------NDAIQ-------CMSFNPITHQL----------  108 (1081)
T ss_pred             EEEEc--cCCceeccCCCceeEEEecccccceee---ecc-------CCeee-------EeecCchHHHh----------
Confidence            99996  569999999999999999865332221   111       11232       68888877765          


Q ss_pred             cccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCC
Q 015363          197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP  275 (408)
Q Consensus       197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  275 (408)
                        ++++- ...-+|.    .+.....+      .....++.+.+|..||.+|+.| .+|+|.+-+.. ++....+     
T Consensus       109 --asCsL-sdFglWS----~~qK~V~K------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I-----  169 (1081)
T KOG1538|consen  109 --ASCSL-SDFGLWS----PEQKSVSK------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKI-----  169 (1081)
T ss_pred             --hhcch-hhccccC----hhhhhHHh------hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEE-----
Confidence              44433 2344554    11111111      1223678899999999999999 99999998665 3333332     


Q ss_pred             CcccCCcCCeEEEEEcCCC----CceEEEEeCCCeEEEEEcCCCceeccccccccccc---------------CCC----
Q 015363          276 ANMEDLTEVITSAEFHPTH----CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE---------------APG----  332 (408)
Q Consensus       276 ~~~~~~~~~v~~~~~~p~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------~~~----  332 (408)
                      .+-.+..++|++++|+|..    ...+++.....++.+|.+.....-...--.|..+.               ...    
T Consensus       170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f  249 (1081)
T KOG1538|consen  170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLF  249 (1081)
T ss_pred             eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEE
Confidence            1123456777888887753    13566666666666665542211000000000000               000    


Q ss_pred             -----CccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCC
Q 015363          333 -----TRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINM  371 (408)
Q Consensus       333 -----~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~  371 (408)
                           ..-+......+|+.++..|++++++.| -||+|-.|++-.
T Consensus       250 TR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  250 TRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             eecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence                 000112234689999999999999988 589999999864

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=2.4e-16  Score=145.45  Aligned_cols=271  Identities=14%  Similarity=0.242  Sum_probs=178.1

Q ss_pred             ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccccee
Q 015363           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  116 (408)
                      +-..+.|+|-...++++...-.|++||.+.++.                       +..|..+...         ...|+
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-----------------------l~~F~n~~~~---------~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL-----------------------LNGFDNGAFP---------DTRVS 1113 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCce-----------------------eccccCCCCC---------CCccc
Confidence            345788898888888888667999999987753                       2333333211         16699


Q ss_pred             EEEEeecCCCcEEEEEeCCCeEEEEEcCCC---cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      .+.+....|..++++|+.||.|+||+--..   +...+.....-.      +..........-+.|......+       
T Consensus      1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls------~~~~~~r~~~~v~dWqQ~~G~L------- 1180 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLS------DQLPGARGTGLVVDWQQQSGHL------- 1180 (1387)
T ss_pred             eeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccc------ccCccCCCCCeeeehhhhCCeE-------
Confidence            999987777889999999999999964322   211111111100      0011111111235666665555       


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeC-CCCCEEEEe-cCCeEEEEeCCCCCc--eee
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISNQ--SFN  269 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~-~d~~i~iwd~~~~~~--~~~  269 (408)
                           ++++.-..|++|| .....      +...+..+....++++.-+ +.|+.+++| .||.|++||.+....  .+.
T Consensus      1181 -----l~tGd~r~IRIWD-a~~E~------~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1181 -----LVTGDVRSIRIWD-AHKEQ------VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred             -----EecCCeeEEEEEe-cccce------eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence                 7777799999999 43321      1111123334557766554 346999999 999999999986544  222


Q ss_pred             EeecCCCcccCCcCC--eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          270 IVDVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      .       ...|...  |..+.+.+.|-..|++|+.||.|++||+|..... . .-+...|..         ..+..+++
T Consensus      1249 ~-------~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-~-~~~iv~~~~---------yGs~lTal 1310 (1387)
T KOG1517|consen 1249 V-------YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-T-FLTIVAHWE---------YGSALTAL 1310 (1387)
T ss_pred             e-------ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc-c-cceeeeccc---------cCccceee
Confidence            2       4567766  9999999988445999999999999999985221 1 111222210         01358999


Q ss_pred             EEccCCCEEEEeCCCeEEEEECCCCCCceeeeeeccc
Q 015363          348 KFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       348 ~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      ..+++...+|+|+-+.|+||++.  |+.+..++.+++
T Consensus      1311 ~VH~hapiiAsGs~q~ikIy~~~--G~~l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1311 TVHEHAPIIASGSAQLIKIYSLS--GEQLNIIKYNPG 1345 (1387)
T ss_pred             eeccCCCeeeecCcceEEEEecC--hhhhcccccCcc
Confidence            99999999999977999999995  577766665544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=1.9e-15  Score=133.13  Aligned_cols=261  Identities=11%  Similarity=0.143  Sum_probs=157.0

Q ss_pred             eeeccceEEEEECCCCCeEEEee-cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      +.+.+....++++|++++|++++ .++.|.+|+++....                    ........ ..          
T Consensus        31 ~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~--------------------l~~~~~~~-~~----------   79 (330)
T PRK11028         31 VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA--------------------LTFAAESP-LP----------   79 (330)
T ss_pred             EecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc--------------------eEEeeeec-CC----------
Confidence            34556788899999999887664 578899999863210                    00111111 11          


Q ss_pred             cccceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCCC-cE---EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          111 IEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEK-KV---KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~~-~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                        .....++|+|  +++++++++ .++.|.+|++.+. ..   ........                .+..+.++|+++.
T Consensus        80 --~~p~~i~~~~--~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~----------------~~~~~~~~p~g~~  139 (330)
T PRK11028         80 --GSPTHISTDH--QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE----------------GCHSANIDPDNRT  139 (330)
T ss_pred             --CCceEEEECC--CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC----------------cccEeEeCCCCCE
Confidence              2356788964  477887776 5889999999742 11   11111110                1125778999988


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCC
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI  263 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~  263 (408)
                      +           +++...++.|.+|| +..... .................+.++|+|++++++++  .++.|.+|+++.
T Consensus       140 l-----------~v~~~~~~~v~v~d-~~~~g~-l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        140 L-----------WVPCLKEDRIRLFT-LSDDGH-LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             E-----------EEeeCCCCEEEEEE-ECCCCc-ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            7           34566779999999 543211 11000000001112346789999999999887  499999999974


Q ss_pred             CC-ce--eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe-CCCeEEEEEcCCCceecccccccccccCCCCcccccc
Q 015363          264 SN-QS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE  339 (408)
Q Consensus       264 ~~-~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (408)
                      .. ..  ...+...+.... +......+.++|++ ++++++. .++.|.+|++......    ..+.++..       . 
T Consensus       207 ~~~~~~~~~~~~~~p~~~~-~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~----~~~~~~~~-------~-  272 (330)
T PRK11028        207 PHGEIECVQTLDMMPADFS-DTRWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSV----LSFEGHQP-------T-  272 (330)
T ss_pred             CCCCEEEEEEEecCCCcCC-CCccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCe----EEEeEEEe-------c-
Confidence            22 21  222211111111 12234468999999 7777764 4789999999654311    11112210       0 


Q ss_pred             ccceeEEEEEccCCCEEEEeC--CCeEEEEECCC
Q 015363          340 IIASISDIKFARNGRHILSRD--YMTLKLWDINM  371 (408)
Q Consensus       340 h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~  371 (408)
                       ......+.|+|||++|+++.  +++|.+|+++.
T Consensus       273 -~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        273 -ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             -cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence             01345789999999999873  59999999864

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.75  E-value=3.3e-16  Score=126.09  Aligned_cols=227  Identities=13%  Similarity=0.193  Sum_probs=163.5

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ..+|+|.+|++|+..+|++.....|.||...+..                    .++...+++.|.            ..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--------------------~w~~~htls~Hd------------~~   57 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--------------------LWEPAHTLSEHD------------KI   57 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCC--------------------CceeceehhhhC------------cc
Confidence            4689999999999999999999999999987765                    144566778887            77


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEc-CCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      |+.|.|.|.  ...|++|+.|+.-++|.. ..++...++.                                        
T Consensus        58 vtgvdWap~--snrIvtcs~drnayVw~~~~~~~Wkptlv----------------------------------------   95 (361)
T KOG1523|consen   58 VTGVDWAPK--SNRIVTCSHDRNAYVWTQPSGGTWKPTLV----------------------------------------   95 (361)
T ss_pred             eeEEeecCC--CCceeEccCCCCccccccCCCCeecccee----------------------------------------
Confidence            999999876  558999999999999988 4444433211                                        


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                                                         +..++...+++.|+|.++.||+| ....|.||-++....-.-.. 
T Consensus        96 -----------------------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK-  139 (361)
T KOG1523|consen   96 -----------------------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK-  139 (361)
T ss_pred             -----------------------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh-
Confidence                                               13445678999999999999999 78888888877333221100 


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccc-------cccccceeE
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF-------FTEIIASIS  345 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~h~~~i~  345 (408)
                         ..-..+...|++++|+|++ -+|++|+.|+..+++..--...-.+     +.......+..       +....+.|.
T Consensus       140 ---hikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdek-----pap~pWgsk~PFG~lm~E~~~~ggwvh  210 (361)
T KOG1523|consen  140 ---HIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEK-----PAPTPWGSKMPFGQLMSEASSSGGWVH  210 (361)
T ss_pred             ---hhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccC-----CCCCCCccCCcHHHHHHhhccCCCcee
Confidence               0123467789999999999 9999999999999997532211111     11111111111       223357899


Q ss_pred             EEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeee
Q 015363          346 DIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       346 ~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~  380 (408)
                      .+.|+|+|..|+-. .|.++.+=|...+.+.+++..
T Consensus       211 ~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~  246 (361)
T KOG1523|consen  211 GVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA  246 (361)
T ss_pred             eeEeCCCCCEeeEecCCCceEEeecCCCchhccchh
Confidence            99999999999965 589999999876443444443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2.1e-16  Score=130.62  Aligned_cols=297  Identities=9%  Similarity=0.119  Sum_probs=190.7

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|.+.|++|.|+.++++||+|+.|..+++|+++..-..                 ...+.+ .+.+|..        
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-----------------k~~KPI-~~~~~~H--------  104 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR-----------------KTPKPI-GVMEHPH--------  104 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh-----------------cCCCCc-eeccCcc--------
Confidence            34579999999999999999999999999999998754210                 001112 2333321        


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                        .+.|.|++|.  ....++.+|..+++|.+.|+++.+.+.++.....      .|.|+       .+..+|....+   
T Consensus       105 --~SNIF~L~F~--~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~------~~~VY-------~m~~~P~DN~~---  164 (609)
T KOG4227|consen  105 --RSNIFSLEFD--LENRFLYSGERWGTVIKHDIETKQSIYVANENNN------RGDVY-------HMDQHPTDNTL---  164 (609)
T ss_pred             --ccceEEEEEc--cCCeeEecCCCcceeEeeecccceeeeeecccCc------cccee-------ecccCCCCceE---
Confidence              2779999994  4467899999999999999999988887766543      34555       56677776665   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCce
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                               ++.+.++.|.+|| .+......  .+.  ...........+.|+|... +|++. ..+.+.+||.+.....
T Consensus       165 ---------~~~t~~~~V~~~D-~Rd~~~~~--~~~--~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~  230 (609)
T KOG4227|consen  165 ---------IVVTRAKLVSFID-NRDRQNPI--SLV--LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP  230 (609)
T ss_pred             ---------EEEecCceEEEEe-ccCCCCCC--cee--eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence                     8889999999999 44322111  111  1133346788899999875 55556 7888999999855443


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      +..+... ..++.....-+++.|+|+| ..|++--....-.+||+-+..+     ..++....++  -.+  ....+.++
T Consensus       231 ~~~~~~~-~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~-----~V~k~D~N~~--GY~--N~~T~KS~  299 (609)
T KOG4227|consen  231 VYQRSMF-KGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRC-----FVLKSDHNPN--GYC--NIKTIKSM  299 (609)
T ss_pred             HHhhhcc-ccCcccchhhhheeeCCCC-CeehhhhccCCCEEeeeecccc-----eeEeccCCCC--cce--eeeeeeee
Confidence            2211100 1122212223678999999 6666655555666788876532     2222211110  000  02467888


Q ss_pred             EEccCCCEEEEeCC-CeEEEEECCCC----C------------------CceeeeeecccccceEEecCCCeee
Q 015363          348 KFARNGRHILSRDY-MTLKLWDINMD----S------------------GPVATFQVHEHLRPKVMHSSKNYFM  398 (408)
Q Consensus       348 ~~spdg~~l~s~~d-~~v~~wd~~~~----~------------------~~~~~~~~~~~~~~~~~~~~~~~~~  398 (408)
                      +|-.| .-+++|+| =.|++|.+...    |                  +.+-.+++|......+-..-.+.++
T Consensus       300 ~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l  372 (609)
T KOG4227|consen  300 TFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLL  372 (609)
T ss_pred             eeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceE
Confidence            89865 44889986 88999998642    1                  2345677777766555544444444

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.75  E-value=9.6e-18  Score=150.77  Aligned_cols=248  Identities=17%  Similarity=0.251  Sum_probs=173.5

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.++|+|+.|...|.++++|+.|..++||..++..                       +++.+.||+          
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----------------------~lAs~rGhs----------  232 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----------------------CLASCRGHS----------  232 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----------------------hhccCCCCc----------
Confidence            35799999999999999999999999999999988776                       467889999          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        +.|+.++.+  .+..++++++.|..|++|.+..+..+.++..+..        .|.       +++|+|-        
T Consensus       233 --~ditdlavs--~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg--------avt-------aiafsP~--------  285 (1113)
T KOG0644|consen  233 --GDITDLAVS--SNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG--------AVT-------AIAFSPR--------  285 (1113)
T ss_pred             --cccchhccc--hhhhhhhhcccCceEEEEecCCCchHHHHhcccc--------cee-------eeccCcc--------
Confidence              669999995  4567899999999999999999988877777643        233       4455542        


Q ss_pred             ccccCccccCCCCCceeeeceeeecccccccccccee---------------------------------eccccccceE
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI---------------------------------YAHAHDYHIN  237 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~v~  237 (408)
                              .+.+.||++++|| ..-........+...                                 ....+...+.
T Consensus       286 --------~sss~dgt~~~wd-~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~li  356 (1113)
T KOG0644|consen  286 --------ASSSDDGTCRIWD-ARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLI  356 (1113)
T ss_pred             --------ccCCCCCceEecc-ccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceE
Confidence                    2445666666666 321100000000000                                 0011111111


Q ss_pred             EEEeCCCC-CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          238 SISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       238 ~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                      -+..+.+- .+.+++ .+-.+++|++.++ ....       .+.+|...+..+.++|.++.+..+++.||...|||+-.+
T Consensus       357 f~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H-------~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg  428 (1113)
T KOG0644|consen  357 FVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLH-------NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG  428 (1113)
T ss_pred             EEeccccccccceeeeeeeEeeeeecccc-hhhh-------hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence            11222121 344445 6677888888844 3322       267899999999999999888899999999999999988


Q ss_pred             ceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCC
Q 015363          316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM  371 (408)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~  371 (408)
                      ....   ..+.+|             +.+.+.+||+||..++..+| |.++|.....
T Consensus       429 ~pik---~y~~gh-------------~kl~d~kFSqdgts~~lsd~hgql~i~g~gq  469 (1113)
T KOG0644|consen  429 IPIK---HYFIGH-------------GKLVDGKFSQDGTSIALSDDHGQLYILGTGQ  469 (1113)
T ss_pred             Ccce---eeeccc-------------ceeeccccCCCCceEecCCCCCceEEeccCC
Confidence            5442   222344             56788899999999998877 9999998764

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.74  E-value=7.1e-16  Score=127.93  Aligned_cols=286  Identities=14%  Similarity=0.222  Sum_probs=175.1

Q ss_pred             cCcccceeeecccCcC------cccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCccccccccccccc
Q 015363           12 AQPLEWKFSQVFGERT------AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMS   85 (408)
Q Consensus        12 ~~~~~w~~~~~~~~~~------~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   85 (408)
                      ..-..|+....-.+..      ......|...|+++.|+|+|.+||+|+.+|.|.+|....-... .+.+      +.-.
T Consensus        36 ~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-~~d~------e~~~  108 (434)
T KOG1009|consen   36 KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-DADT------EADL  108 (434)
T ss_pred             cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-cccc------hhhh
Confidence            4556788876432221      1123469999999999999999999999999999997642210 0111      1111


Q ss_pred             CCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCC
Q 015363           86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG  165 (408)
Q Consensus        86 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  165 (408)
                      ..+.+.....+.+|.            ..|..++|+|+  +.++++++.|+.+++||+..++.......+.+-       
T Consensus       109 ~ke~w~v~k~lr~h~------------~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y-------  167 (434)
T KOG1009|consen  109 NKEKWVVKKVLRGHR------------DDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY-------  167 (434)
T ss_pred             CccceEEEEEecccc------------cchhhhhccCC--CceeeeeeccceEEEEEeccceeEeeccccccc-------
Confidence            234556667788888            66999999765  779999999999999999999988887776543       


Q ss_pred             CeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccc---------------ccccccceeec-
Q 015363          166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET---------------NLVAGCRRIYA-  229 (408)
Q Consensus       166 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~~~-  229 (408)
                       +.       .++|.|-++++            ++-+.|...+.+. +.....               ...+...+.+. 
T Consensus       168 -vq-------gvawDpl~qyv------------~s~s~dr~~~~~~-~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhD  226 (434)
T KOG1009|consen  168 -VQ-------GVAWDPLNQYV------------ASKSSDRHPEGFS-AKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHD  226 (434)
T ss_pred             -cc-------eeecchhhhhh------------hhhccCcccceee-eeeeeeeeeeeeeEeeecccCCCCcceeeeeec
Confidence             22       57888888887            4444444333333 111000               00011111110 


Q ss_pred             cccccceEEEEeCCCCCEEEEe-----cCCeE-----EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcC-------
Q 015363          230 HAHDYHINSISNNSDGETFISA-----DDLRI-----NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-------  292 (408)
Q Consensus       230 ~~~~~~v~~i~~~~~~~~l~~~-----~d~~i-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-------  292 (408)
                      ..-..-.+.++|+|+|.+|++.     ..+.+     ++|+-....++..       .+..-..++..+.|+|       
T Consensus       227 eTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~-------~lp~~~k~~lavr~~pVy~elrp  299 (434)
T KOG1009|consen  227 ETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA-------RLPSPKKPALAVRFSPVYYELRP  299 (434)
T ss_pred             CchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee-------ecCCCCcceEEEEeeeeEEEecc
Confidence            0011235668899999999863     13333     4454432222221       1333334444444443       


Q ss_pred             -----------CCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-
Q 015363          293 -----------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-  360 (408)
Q Consensus       293 -----------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-  360 (408)
                                 -+ ..+|.++ ...|.+||.++-...    ....           .-|-..|++++|++||.+|+..+ 
T Consensus       300 ~~~~~~~~~lpyr-lvfaiAt-~~svyvydtq~~~P~----~~v~-----------nihy~~iTDiaws~dg~~l~vSS~  362 (434)
T KOG1009|consen  300 LSSEKFLFVLPYR-LVFAIAT-KNSVYVYDTQTLEPL----AVVD-----------NIHYSAITDIAWSDDGSVLLVSST  362 (434)
T ss_pred             ccccccccccccc-eEEEEee-cceEEEeccccccce----EEEe-----------eeeeeeecceeecCCCcEEEEecc
Confidence                       23 3455554 557999999875432    2222           22357899999999999988775 


Q ss_pred             CCeEEEEECC
Q 015363          361 YMTLKLWDIN  370 (408)
Q Consensus       361 d~~v~~wd~~  370 (408)
                      ||...+--+.
T Consensus       363 DGyCS~vtfe  372 (434)
T KOG1009|consen  363 DGFCSLVTFE  372 (434)
T ss_pred             CCceEEEEEc
Confidence            7766665554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.74  E-value=5.5e-17  Score=141.87  Aligned_cols=240  Identities=18%  Similarity=0.246  Sum_probs=162.6

Q ss_pred             ECCCCCeEEE--eecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEE
Q 015363           43 FDKSGDHLAT--GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW  120 (408)
Q Consensus        43 ~s~~~~~l~s--g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~  120 (408)
                      |+.+..++|+  .+..|.|-||++......                 |+...-..+.+              ..|+++.|
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrL-----------------PDgv~p~l~Ng--------------t~vtDl~W  635 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRL-----------------PDGVMPGLFNG--------------TLVTDLHW  635 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCC-----------------CcccccccccC--------------ceeeeccc
Confidence            3334455554  455789999998754321                 23222233333              44999999


Q ss_pred             eecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccC
Q 015363          121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFP  200 (408)
Q Consensus       121 ~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  200 (408)
                      .|- |.+.||+++.||.|++|.+..+......                                                
T Consensus       636 dPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~------------------------------------------------  666 (1012)
T KOG1445|consen  636 DPF-DDERLAVATDDGQINLWRLTANGLPENE------------------------------------------------  666 (1012)
T ss_pred             CCC-ChHHeeecccCceEEEEEeccCCCCccc------------------------------------------------
Confidence            874 4578999999999999998765422110                                                


Q ss_pred             CCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcc
Q 015363          201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANM  278 (408)
Q Consensus       201 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  278 (408)
                                           ..+... +..|...|+++.|+|-- +.|+++ .|.+|++||+.+......        +
T Consensus       667 ---------------------~tPe~~-lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~--------l  716 (1012)
T KOG1445|consen  667 ---------------------MTPEKI-LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR--------L  716 (1012)
T ss_pred             ---------------------CCccee-eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe--------e
Confidence                                 011111 37888889999999964 677788 899999999996554433        7


Q ss_pred             cCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363          279 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  358 (408)
Q Consensus       279 ~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s  358 (408)
                      .+|.+.|..++|+|+| +.+|+.+.||+|++|+-+++..   +++.-.+..           ...--.+.|.-||++|+.
T Consensus       717 ~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~---pv~Eg~gpv-----------gtRgARi~wacdgr~viv  781 (1012)
T KOG1445|consen  717 VGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQ---PVYEGKGPV-----------GTRGARILWACDGRIVIV  781 (1012)
T ss_pred             ccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCC---ccccCCCCc-----------cCcceeEEEEecCcEEEE
Confidence            8999999999999999 9999999999999999998753   233333321           122345789999998875


Q ss_pred             -e----CCCeEEEEECCCC-CCceeeeeecccccceEEecCCCe--eee----eeceeeecC
Q 015363          359 -R----DYMTLKLWDINMD-SGPVATFQVHEHLRPKVMHSSKNY--FMG----LDNIHTLYE  408 (408)
Q Consensus       359 -~----~d~~v~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~d~~~~~~~  408 (408)
                       |    +...|.+||..+- +.++.+..-.......+. .|+.|  .+.    .|++..+||
T Consensus       782 ~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP-~YD~Ds~~lfltGKGD~~v~~yE  842 (1012)
T KOG1445|consen  782 VGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVP-HYDYDSNVLFLTGKGDRFVNMYE  842 (1012)
T ss_pred             ecccccchhhhhhhhhhhccCCcceeeeecccCccccc-cccCCCceEEEecCCCceEEEEE
Confidence             4    2378999998763 355555554444444443 34433  332    288888876

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=2.1e-16  Score=137.20  Aligned_cols=235  Identities=14%  Similarity=0.230  Sum_probs=162.3

Q ss_pred             eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeec
Q 015363           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (408)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (408)
                      +...+.+|+            +.|.+|...|.  |.+|++|+.||+|+||.+.++.++.......         .|.   
T Consensus       392 ~~lvyrGHt------------g~Vr~iSvdp~--G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---------~I~---  445 (733)
T KOG0650|consen  392 CALVYRGHT------------GLVRSISVDPS--GEWLASGSDDGTVRIWEIATGRCVRTVQFDS---------EIR---  445 (733)
T ss_pred             eeeeEeccC------------CeEEEEEecCC--cceeeecCCCCcEEEEEeecceEEEEEeecc---------eeE---
Confidence            345678888            77999999665  8899999999999999999999998877733         343   


Q ss_pred             CCceeeEEccCCCeeeccc-------------c-----cccCccccCC----CCCceeeeceeeeccccccccccceeec
Q 015363          172 VSAIPKSYMANGGCGERNF-------------G-----CASNDSSFPP----GGVSSLRLPVVVTSQETNLVAGCRRIYA  229 (408)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~~-------------~-----~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~  229 (408)
                          +++|+|.+..-..+.             |     ......++++    ..+..+..|. -...+....+  ++. .
T Consensus       446 ----~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~-~~~~~e~~~~--v~~-~  517 (733)
T KOG0650|consen  446 ----SVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWS-RASLDELEKG--VCI-V  517 (733)
T ss_pred             ----EEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeec-hhhhhhhccc--eEE-E
Confidence                567776654221110             0     0011122222    2345556665 2211122222  122 2


Q ss_pred             cccccceEEEEeCCCCCEEEEe----cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC
Q 015363          230 HAHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG  305 (408)
Q Consensus       230 ~~~~~~v~~i~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  305 (408)
                      -.|...|+.+.|+..|.+|++.    ....|.|+++.... ...       .+....+.|.++.|+|.. .+|++++ ..
T Consensus       518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~-sQ~-------PF~kskG~vq~v~FHPs~-p~lfVaT-q~  587 (733)
T KOG0650|consen  518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK-SQS-------PFRKSKGLVQRVKFHPSK-PYLFVAT-QR  587 (733)
T ss_pred             EecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc-ccC-------chhhcCCceeEEEecCCC-ceEEEEe-cc
Confidence            4677899999999999999985    35688899887322 221       144456778999999999 5555544 56


Q ss_pred             eEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeeccc
Q 015363          306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       306 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      .|+|||+....++    +.+...            ...|..++.+|.|..|+.|+ |+.++.||++...++.+++..|..
T Consensus       588 ~vRiYdL~kqelv----KkL~tg------------~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~  651 (733)
T KOG0650|consen  588 SVRIYDLSKQELV----KKLLTG------------SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK  651 (733)
T ss_pred             ceEEEehhHHHHH----HHHhcC------------CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh
Confidence            7999999886554    443333            25899999999999999887 799999999987789999999887


Q ss_pred             cc
Q 015363          385 LR  386 (408)
Q Consensus       385 ~~  386 (408)
                      ..
T Consensus       652 av  653 (733)
T KOG0650|consen  652 AV  653 (733)
T ss_pred             hh
Confidence            53

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=3.9e-15  Score=122.21  Aligned_cols=238  Identities=14%  Similarity=0.160  Sum_probs=163.5

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ...++.+.|+.+...|..|+.|| -++|+.+.....                      ..... ..            ..
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~----------------------~~~~~-~~------------~~   48 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC----------------------FSKDT-EG------------VS   48 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh----------------------hcccC-CC------------eE
Confidence            34577888999999999999996 568886644310                      00000 01            33


Q ss_pred             eeEEEEeecCCCcEEEEEeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      |.-+-|+    ..++|..+.+.  .+++.+++.+..+....+..         .+.       ++..+.  +.+      
T Consensus        49 IvEmLFS----SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt---------~IL-------~VrmNr--~RL------  100 (391)
T KOG2110|consen   49 IVEMLFS----SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT---------SIL-------AVRMNR--KRL------  100 (391)
T ss_pred             EEEeecc----cceeEEEecCCCceEEEEEcccCceEEEEecCC---------ceE-------EEEEcc--ceE------
Confidence            6667774    34777776543  58898888777666555532         222       233332  222      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe---cCCeEEEEeCCCCCceee
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~  269 (408)
                            ++.-+ ..|.+|| ++.++.......    ...+...+.++++++.+.++|.-   ..|.|.+||+.+- +...
T Consensus       101 ------vV~Le-e~IyIyd-I~~MklLhTI~t----~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-~~v~  167 (391)
T KOG2110|consen  101 ------VVCLE-ESIYIYD-IKDMKLLHTIET----TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL-QPVN  167 (391)
T ss_pred             ------EEEEc-ccEEEEe-cccceeehhhhc----cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc-eeee
Confidence                  33223 3499999 776554332211    13455667777888888899963   6899999999844 3433


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe-EEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      .       +..|.+.+-+++|+++| .+||+++..|+ ||++.+..|+.+    ++|.....          ...|.+++
T Consensus       168 ~-------I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl----~eFRRG~~----------~~~IySL~  225 (391)
T KOG2110|consen  168 T-------INAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKL----YEFRRGTY----------PVSIYSLS  225 (391)
T ss_pred             E-------EEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEe----eeeeCCce----------eeEEEEEE
Confidence            3       57899999999999999 99999999885 789999999765    55543311          25799999


Q ss_pred             EccCCCEEEEeCC-CeEEEEECCC
Q 015363          349 FARNGRHILSRDY-MTLKLWDINM  371 (408)
Q Consensus       349 ~spdg~~l~s~~d-~~v~~wd~~~  371 (408)
                      |+||+++|++.++ ++|.+|.++.
T Consensus       226 Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  226 FSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             ECCCCCeEEEecCCCeEEEEEecc
Confidence            9999999998876 9999999975

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.73  E-value=2.2e-16  Score=130.93  Aligned_cols=227  Identities=16%  Similarity=0.290  Sum_probs=154.5

Q ss_pred             ccceEEEEECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           35 VDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        35 ~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      ..+|.++.|.++.. .||||+.|..|+||.+......+              -.+...++..+..|.            .
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~--------------~~~~V~y~s~Ls~H~------------~   66 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG--------------GDMKVEYLSSLSRHT------------R   66 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCC--------------CceeEEEeecccCCc------------c
Confidence            35789999998755 99999999999999987665320              013455677888888            7


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      .|+++.|+|.  |++||+|+.+|.|.+|....-...      ..                        +. ..       
T Consensus        67 aVN~vRf~p~--gelLASg~D~g~v~lWk~~~~~~~------~~------------------------d~-e~-------  106 (434)
T KOG1009|consen   67 AVNVVRFSPD--GELLASGGDGGEVFLWKQGDVRIF------DA------------------------DT-EA-------  106 (434)
T ss_pred             eeEEEEEcCC--cCeeeecCCCceEEEEEecCcCCc------cc------------------------cc-hh-------
Confidence            7999999755  889999999999999987651100      00                        00 00       


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                                             +.......++..+.+|...|..++|+|++.+++++ .|..+++||+. .++...+  
T Consensus       107 -----------------------~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~--  160 (434)
T KOG1009|consen  107 -----------------------DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAI--  160 (434)
T ss_pred             -----------------------hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEee--
Confidence                                   00000111112246788999999999999999999 89999999999 4555544  


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccc----cccccccC--CCCcccccc-ccceeE
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS----KLFEEQEA--PGTRSFFTE-IIASIS  345 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~-h~~~i~  345 (408)
                           +.+|...+..++|.|.+ +++++-+.|...+.+++.........-    .....++.  ...+.+..+ ...-..
T Consensus       161 -----~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr  234 (434)
T KOG1009|consen  161 -----LDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR  234 (434)
T ss_pred             -----ccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence                 68899999999999999 999999999877777766543321100    00000100  000100000 123356


Q ss_pred             EEEEccCCCEEEEe
Q 015363          346 DIKFARNGRHILSR  359 (408)
Q Consensus       346 ~~~~spdg~~l~s~  359 (408)
                      .++|+|||.+|++.
T Consensus       235 RlsfTPdG~llvtP  248 (434)
T KOG1009|consen  235 RLSFTPDGSLLVTP  248 (434)
T ss_pred             hcccCCCCcEEEcc
Confidence            78999999999974

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.72  E-value=9.9e-17  Score=129.43  Aligned_cols=235  Identities=9%  Similarity=0.083  Sum_probs=145.9

Q ss_pred             cceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ...+|...|+.|.+.|+ .+++++||.|..|+||++++..+.                    .....+.+|.        
T Consensus       130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv--------------------~VfGG~egHr--------  181 (385)
T KOG1034|consen  130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV--------------------AVFGGVEGHR--------  181 (385)
T ss_pred             ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE--------------------EEeccccccc--------
Confidence            45689999999999997 579999999999999999987642                    1233457788        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccC----CCCc-ccCCCCCeEeecCCceeeEEc-cC
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN----VHPE-KAAGNGPIFGSHVSAIPKSYM-AN  182 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~~-~~~~~~~v~~~~~~~~~~~~~-~~  182 (408)
                          +.|.++.|+++  |.+|++++.|-++++|++...+....++..    .... ...|.-...       --.|+ .+
T Consensus       182 ----deVLSvD~~~~--gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~-------fp~fst~d  248 (385)
T KOG1034|consen  182 ----DEVLSVDFSLD--GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH-------FPDFSTTD  248 (385)
T ss_pred             ----CcEEEEEEcCC--CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc-------cccccccc
Confidence                66999999655  889999999999999999865433222211    0000 000000000       00000 00


Q ss_pred             --CCeeecccccccCccccCCCCCceeeeceeeeccccc-----cccccceee--ccccccc--eEEEEeCCCCCEEEEe
Q 015363          183 --GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-----LVAGCRRIY--AHAHDYH--INSISNNSDGETFISA  251 (408)
Q Consensus       183 --~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~--v~~i~~~~~~~~l~~~  251 (408)
                        ..++.+..-  -.+++++-+-++.|..|. .-..+..     +...+...+  ..-....  ..-.+|+|-++.||.|
T Consensus       249 iHrnyVDCvrw--~gd~ilSkscenaI~~w~-pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g  325 (385)
T KOG1034|consen  249 IHRNYVDCVRW--FGDFILSKSCENAIVCWK-PGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG  325 (385)
T ss_pred             cccchHHHHHH--HhhheeecccCceEEEEe-cchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence              001111100  125568888888999988 4211111     111111111  0112222  3345667888999999


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363          252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  313 (408)
                       ..|.|.+||++........-    ..-......|+..+|+.++ .+|+..+.|++|.-||..
T Consensus       326 nq~g~v~vwdL~~~ep~~~tt----l~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  326 NQSGKVYVWDLDNNEPPKCTT----LTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cCCCcEEEEECCCCCCccCce----EEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence             99999999998655421110    0011224568999999999 899999999999999864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.72  E-value=6.4e-16  Score=122.67  Aligned_cols=217  Identities=16%  Similarity=0.218  Sum_probs=152.4

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .+.+.|.|+.|.|++..||+-. |..|.+|+++.....                      .+.+...       .+.++.
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~----------------------vaev~ss-------~s~e~~  170 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI----------------------VAEVLSS-------ESAEMR  170 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch----------------------heeeccc-------cccccc
Confidence            4566899999999998888876 779999999876531                      0111100       001112


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEec-cCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFD-WNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      ...++-+|+|..+|..+++ ..|+++..||+++.+....+. .+..        .+.       .+.|+|+.+++     
T Consensus       171 ~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq--------~vr-------dlDfNpnkq~~-----  229 (370)
T KOG1007|consen  171 HSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQ--------RVR-------DLDFNPNKQHI-----  229 (370)
T ss_pred             ceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcc--------eee-------eccCCCCceEE-----
Confidence            5588899999888877765 568999999999765433222 1111        122       57888988876     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCceee
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                            +++++.|+.|++|| .+..     ..+++. +.+|.-+|.++.|+|... ++++| .|..|.+|....-....+
T Consensus       230 ------lvt~gDdgyvriWD-~R~t-----k~pv~e-l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q  296 (370)
T KOG1007|consen  230 ------LVTCGDDGYVRIWD-TRKT-----KFPVQE-LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ  296 (370)
T ss_pred             ------EEEcCCCccEEEEe-ccCC-----Cccccc-cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccc
Confidence                  79999999999999 4432     234444 489999999999999864 55566 899999997653221111


Q ss_pred             Ee---------------ecCC------CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363          270 IV---------------DVKP------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       270 ~~---------------~~~~------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  313 (408)
                      +.               +.++      .++..|...|++++|+.-.+-+||+-+.||++.|=.+.
T Consensus       297 i~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  297 IEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            10               0011      25678999999999999888899999999999986654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.8e-16  Score=133.28  Aligned_cols=292  Identities=13%  Similarity=0.164  Sum_probs=189.1

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      .-.|.+.|+.|.|+..|..|++|+.|..|.+||+......                      +.--.+|.          
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------------l~f~SGH~----------  185 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------------LSFESGHC----------  185 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------------cccccccc----------
Confidence            3479999999999999999999999999999998876531                      22235566          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                        ..|..-.|.|..+...+++++.||.+++=.+.. +.+..+.....+      .+.+.       .++..|+..+.   
T Consensus       186 --~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h------~g~vh-------klav~p~sp~~---  247 (559)
T KOG1334|consen  186 --NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPH------EGPVH-------KLAVEPDSPKP---  247 (559)
T ss_pred             --cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccc------cCccc-------eeeecCCCCCc---
Confidence              667788899988888999999999999987653 333322222111      22233       45555555443   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeecccccc---ceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCC
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY---HINSISNNSDGE-TFISA-DDLRINLWNLEIS  264 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~  264 (408)
                              +++++.|+.+.-.| ++.........|+.    .+..   ....++.+|... .++++ .|..+++||.+.-
T Consensus       248 --------f~S~geD~~v~~~D-lr~~~pa~~~~cr~----~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~  314 (559)
T KOG1334|consen  248 --------FLSCGEDAVVFHID-LRQDVPAEKFVCRE----ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI  314 (559)
T ss_pred             --------ccccccccceeeee-eccCCccceeeeec----cCCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence                    58999999999888 54432222222222    2223   577899999875 77787 8999999998743


Q ss_pred             CceeeE---eecCCCcc-cCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          265 NQSFNI---VDVKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       265 ~~~~~~---~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      ...-..   -.+-|..+ ......|++++|+.++..+|++ -.|-.|+++.-..+.-. .+. .. ....+..+..++||
T Consensus       315 ~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS-YnDe~IYLF~~~~~~G~-~p~-~~-s~~~~~~k~vYKGH  390 (559)
T KOG1334|consen  315 DKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS-YNDEDIYLFNKSMGDGS-EPD-PS-SPREQYVKRVYKGH  390 (559)
T ss_pred             hhccccchhhhcCCccccccCcccceeEEecCCccceeee-ecccceEEeccccccCC-CCC-CC-cchhhccchhhccc
Confidence            222000   00111111 1234568999999888455554 56778999843322110 000 00 00011223334454


Q ss_pred             c--ceeEEEEE-ccCCCEEEEeCC-CeEEEEECCCCCCceeeeeecccccceEE
Q 015363          341 I--ASISDIKF-ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKVM  390 (408)
Q Consensus       341 ~--~~i~~~~~-spdg~~l~s~~d-~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  390 (408)
                      .  ..|..+-| -|...|+++|+| |.|.||+-.+ ++.++.+.+....+++|-
T Consensus       391 rN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t-~eii~~MegDr~VVNCLE  443 (559)
T KOG1334|consen  391 RNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT-GEIIRFMEGDRHVVNCLE  443 (559)
T ss_pred             ccccccceeeeccCccceEEecCccceEEEEecch-hHHHHHhhcccceEeccC
Confidence            3  35777754 578899999999 9999999997 788888888777666654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.4e-15  Score=137.93  Aligned_cols=277  Identities=13%  Similarity=0.116  Sum_probs=176.9

Q ss_pred             EEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEE
Q 015363           41 IEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW  120 (408)
Q Consensus        41 ~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~  120 (408)
                      -.|++|+++++....+ .|.||...++.++                       +.+..|.            .+++.+.+
T Consensus        22 avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i-----------------------~~l~~~~------------a~l~s~~~   65 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCTGN-FVKVYSTATGECI-----------------------TSLEDHT------------APLTSVIV   65 (792)
T ss_pred             cccccCCcEEEEeeCC-EEEEEecchHhhh-----------------------hhccccc------------Cccceeee
Confidence            4689999988777654 9999999988753                       5678888            78999999


Q ss_pred             eecCCC-cEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCccc------CCCC-CeEeec-CCceeeEEcc----CCCeee
Q 015363          121 CQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA------AGNG-PIFGSH-VSAIPKSYMA----NGGCGE  187 (408)
Q Consensus       121 ~p~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~-~v~~~~-~~~~~~~~~~----~~~~l~  187 (408)
                      .|.+.. .++.+++.||.|++||...++...++..+......      .... .++... +...-..+++    .+..+.
T Consensus        66 ~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~  145 (792)
T KOG1963|consen   66 LPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFV  145 (792)
T ss_pred             cCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeE
Confidence            887654 57779999999999999999988887766544211      0000 111111 0000001111    011000


Q ss_pred             ----------cccccc-cCccccCCC-------CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE
Q 015363          188 ----------RNFGCA-SNDSSFPPG-------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  249 (408)
Q Consensus       188 ----------~~~~~~-~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  249 (408)
                                .+.... ...++...+       .+..+.+|. +....   ...+.+.....|...+++.+++|.++++|
T Consensus       146 ~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~-v~~~~---~~~~~~~~~~~Htf~~t~~~~spn~~~~A  221 (792)
T KOG1963|consen  146 LATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYF-VPKHT---KHTSSRDITVHHTFNITCVALSPNERYLA  221 (792)
T ss_pred             eeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEE-ecccc---eeeccchhhhhhcccceeEEeccccceEE
Confidence                      000000 011111111       122334444 21111   11222222356777799999999999999


Q ss_pred             Ee-cCCeEEEEeCCC-CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccc
Q 015363          250 SA-DDLRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE  327 (408)
Q Consensus       250 ~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  327 (408)
                      +| .||+|.+|.--. .+....     ...+..|...|++++|+++| .+|.+|+..+.+.+|.+.+++.     +-++.
T Consensus       222 a~d~dGrI~vw~d~~~~~~~~t-----~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k-----qfLPR  290 (792)
T KOG1963|consen  222 AGDSDGRILVWRDFGSSDDSET-----CTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK-----QFLPR  290 (792)
T ss_pred             EeccCCcEEEEecccccccccc-----ceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-----ccccc
Confidence            99 899999996542 121111     12367899999999999999 9999999999999999999863     22222


Q ss_pred             ccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeee
Q 015363          328 QEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       328 ~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      -            .++|..+.+|||+.+.+.. .|+.|.+-...+ .....++.+
T Consensus       291 L------------gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsg  332 (792)
T KOG1963|consen  291 L------------GSPILHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISG  332 (792)
T ss_pred             c------------CCeeEEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccC
Confidence            2            4789999999999877765 788999988854 344444444

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3.6e-15  Score=135.37  Aligned_cols=273  Identities=12%  Similarity=0.184  Sum_probs=159.1

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|.-.++|.++||.++++|+|..||+|.+|.--....                   +-.-.+.+.-|.          
T Consensus       201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------------~~~t~t~lHWH~----------  251 (792)
T KOG1963|consen  201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------------DSETCTLLHWHH----------  251 (792)
T ss_pred             hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-------------------ccccceEEEecc----------
Confidence            356888899999999999999999999999997332110                   001124577787          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|++++|+++  |.+|++|+..+.+.+|.+.+++ .+.+..-        .+.+.       .+.++||+...    
T Consensus       252 --~~V~~L~fS~~--G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRL--------gs~I~-------~i~vS~ds~~~----  307 (792)
T KOG1963|consen  252 --DEVNSLSFSSD--GAYLLSGGREGVLVLWQLETGK-KQFLPRL--------GSPIL-------HIVVSPDSDLY----  307 (792)
T ss_pred             --cccceeEEecC--CceEeecccceEEEEEeecCCC-ccccccc--------CCeeE-------EEEEcCCCCeE----
Confidence              66999999755  9999999999999999999987 3333221        12233       57788888765    


Q ss_pred             ccccCccccCCCCCceeeeceeeecccccccc----ccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVA----GCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                              ...-.|+.|.+.. ...++.....    .+.........+-.+.++++|.-+.++-. ..+.|.+||+.+..
T Consensus       308 --------sl~~~DNqI~li~-~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~  378 (792)
T KOG1963|consen  308 --------SLVLEDNQIHLIK-ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS  378 (792)
T ss_pred             --------EEEecCceEEEEe-ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence                    4444566666533 1111110000    00000001111223344444432222222 44444444443222


Q ss_pred             ceeeEee------------------------------------------------------------cCCCcccCCcCCe
Q 015363          266 QSFNIVD------------------------------------------------------------VKPANMEDLTEVI  285 (408)
Q Consensus       266 ~~~~~~~------------------------------------------------------------~~~~~~~~~~~~v  285 (408)
                      ...++.-                                                            +...-...|...+
T Consensus       379 ~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~  458 (792)
T KOG1963|consen  379 TIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAF  458 (792)
T ss_pred             eeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCcee
Confidence            1111100                                                            0000123455554


Q ss_pred             EEEEEcC-CCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeE
Q 015363          286 TSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTL  364 (408)
Q Consensus       286 ~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v  364 (408)
                      ...++.+ .....+++++.||.+++|-+...+..      .+....+.+..+-..|...+..++|+.||..|+.+-+++|
T Consensus       459 vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~------~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~I  532 (792)
T KOG1963|consen  459 VATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI------YKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTI  532 (792)
T ss_pred             EEEEEecCcccceeEEeccCCeEEEEEEeccccc------CcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEE
Confidence            4444443 33237899999999999988554322      1111112222222335678999999999999999988899


Q ss_pred             EEEECCC
Q 015363          365 KLWDINM  371 (408)
Q Consensus       365 ~~wd~~~  371 (408)
                      .+||..+
T Consensus       533 tiwd~~~  539 (792)
T KOG1963|consen  533 TIWDYDT  539 (792)
T ss_pred             EEecCCC
Confidence            9999987

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.4e-15  Score=138.12  Aligned_cols=207  Identities=11%  Similarity=0.091  Sum_probs=133.4

Q ss_pred             cceeEEEEeecCCCcEEEEEeCC---CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALYLLSTND---KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..+.+++|+|+  |+.|+.++.+   ..|++||+.+++...........         .       ...|+|||+.+   
T Consensus       204 ~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---------~-------~~~wSPDG~~L---  262 (429)
T PRK01742        204 QPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---------G-------APAFSPDGSRL---  262 (429)
T ss_pred             CccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---------C-------ceeECCCCCEE---
Confidence            56899999765  8888887643   47999999988655443322111         1       47899999977   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCce
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~  267 (408)
                              +++...++.+.+|. +....    .. ...+ ..+...+...+|+|||+.|+.+  .++...||+++.....
T Consensus       263 --------a~~~~~~g~~~Iy~-~d~~~----~~-~~~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~  327 (429)
T PRK01742        263 --------AFASSKDGVLNIYV-MGANG----GT-PSQL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG  327 (429)
T ss_pred             --------EEEEecCCcEEEEE-EECCC----CC-eEee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence                    23344667666664 22111    11 1222 4455567889999999977754  5788888887643333


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      ...       + .+..  ..+.|+|+| +.|++.+.++ +.+||+.++...     .+...             .....+
T Consensus       328 ~~~-------l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~-----~lt~~-------------~~~~~~  377 (429)
T PRK01742        328 ASL-------V-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTE-----VLSST-------------FLDESP  377 (429)
T ss_pred             eEE-------e-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeE-----EecCC-------------CCCCCc
Confidence            322       1 1222  457899999 7887777665 556999887532     11111             012457


Q ss_pred             EEccCCCEEEEeC-CCeEEEEECC-CCCCceeeeeecccc
Q 015363          348 KFARNGRHILSRD-YMTLKLWDIN-MDSGPVATFQVHEHL  385 (408)
Q Consensus       348 ~~spdg~~l~s~~-d~~v~~wd~~-~~~~~~~~~~~~~~~  385 (408)
                      .|+|||++|+.++ ++.+.+|++. ..++..+.+..|.+.
T Consensus       378 ~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~  417 (429)
T PRK01742        378 SISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQ  417 (429)
T ss_pred             eECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCC
Confidence            8999999999874 5777777652 247888888877764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=4.2e-16  Score=130.03  Aligned_cols=206  Identities=16%  Similarity=0.173  Sum_probs=140.3

Q ss_pred             EEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEE
Q 015363           39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI  118 (408)
Q Consensus        39 ~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v  118 (408)
                      .+++|+.+|..|++|+.||++|||++.....                       +.....|.            ..|.++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-----------------------~l~e~~~~------------~eV~DL  192 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-----------------------ILEEIAHH------------AEVKDL  192 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh-----------------------hhhhHhhc------------Cccccc
Confidence            7899999999999999999999999765442                       34556676            569999


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC--CeeecccccccCc
Q 015363          119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG--GCGERNFGCASND  196 (408)
Q Consensus       119 ~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~  196 (408)
                      .|+|+  |++|++-+.| ..+||+++++...........+..      +.       .+.|+.++  ..+         .
T Consensus       193 ~FS~d--gk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~------~~-------~cRF~~d~~~~~l---------~  247 (398)
T KOG0771|consen  193 DFSPD--GKFLASIGAD-SARVWSVNTGAALARKTPFSKDEM------FS-------SCRFSVDNAQETL---------R  247 (398)
T ss_pred             eeCCC--CcEEEEecCC-ceEEEEeccCchhhhcCCcccchh------hh-------hceecccCCCceE---------E
Confidence            99755  8899999999 999999999855443332111110      00       23333333  111         0


Q ss_pred             cccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCC
Q 015363          197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP  275 (408)
Q Consensus       197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  275 (408)
                      +++.....+.|+.|+ +.--......+..+.  ......|.+++++++|+++|.| .||.|-+++... -+....+    
T Consensus       248 laa~~~~~~~v~~~~-~~~w~~~~~l~~~~~--~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~-lq~~~~v----  319 (398)
T KOG0771|consen  248 LAASQFPGGGVRLCD-ISLWSGSNFLRLRKK--IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS-LQRLQYV----  319 (398)
T ss_pred             EEEecCCCCceeEEE-eeeeccccccchhhh--hhccCcceeEEEcCCCcEEEEeccCCcEEEEEece-eeeeEee----
Confidence            113334445566555 222111111111111  1222569999999999999999 999999999983 4444432    


Q ss_pred             CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       276 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                        -..|...|+.+.|+|+. +++++.+.|.++.+..+.-.
T Consensus       320 --k~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  320 --KEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             --hhhheeeeeeEEEcCCc-CcccccccCCceeEEEEeec
Confidence              46799999999999999 99999999999998877653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.69  E-value=1.9e-13  Score=125.15  Aligned_cols=266  Identities=20%  Similarity=0.363  Sum_probs=188.3

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|...|.++.+.+.+..++.++.|+.+.+|+......                      ....+.++..         
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~~~~~~---------  109 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK----------------------LIKSLEGLHD---------  109 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce----------------------eEEEEeccCC---------
Confidence            457899999999999999999999999999999876631                      1233444221         


Q ss_pred             cccceeEEEEeecCCCc-EEEEEe-CCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          111 IEEKINKIRWCQSANSA-LYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~-~l~~~~-~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                        ..+..+.+. .+++. .++..+ .|+.+.+|+... .........+..        .+.       .+.++|++..+ 
T Consensus       110 --~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~v~-------~~~~~~~~~~~-  170 (466)
T COG2319         110 --SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE--------SVT-------SLAFSPDGKLL-  170 (466)
T ss_pred             --CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcc--------cEE-------EEEECCCCCEE-
Confidence              246777774 45565 455544 499999999997 555555444432        232       58999999866 


Q ss_pred             cccccccCccccCCCC-CceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCC
Q 015363          188 RNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEIS  264 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~  264 (408)
                                 ++++. ++.+++|+ +..      ......+ ..|...+.+++|+|++. .++++ .|+.|++||.. .
T Consensus       171 -----------~~~~~~~~~~~~~~-~~~------~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~  230 (466)
T COG2319         171 -----------ASGSSLDGTIKLWD-LRT------GKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-T  230 (466)
T ss_pred             -----------EecCCCCCceEEEE-cCC------CceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-C
Confidence                       66665 99999999 433      2233332 56889999999999998 56664 89999999887 3


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      ......      .+..|.... ...|+|++ .++++++.|+.+++|+++.....   +..+.+|            ...|
T Consensus       231 ~~~~~~------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~------------~~~v  287 (466)
T COG2319         231 GKLLRS------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRTLSGH------------SSSV  287 (466)
T ss_pred             CcEEee------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEEEecC------------CccE
Confidence            333331      156666664 34899999 88999999999999999976531   1222233            4789


Q ss_pred             EEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeee--ecccccceEE
Q 015363          345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ--VHEHLRPKVM  390 (408)
Q Consensus       345 ~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~--~~~~~~~~~~  390 (408)
                      .++.|+|++..+++++ |+.+.+|++.+ ........  .|......+.
T Consensus       288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  335 (466)
T COG2319         288 LSVAFSPDGKLLASGSSDGTVRLWDLET-GKLLSSLTLKGHEGPVSSLS  335 (466)
T ss_pred             EEEEECCCCCEEEEeeCCCcEEEEEcCC-CceEEEeeecccCCceEEEE
Confidence            9999999888888874 68899999987 45555554  6666433333

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.68  E-value=6.5e-16  Score=135.29  Aligned_cols=217  Identities=14%  Similarity=0.191  Sum_probs=151.7

Q ss_pred             eeeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      +.....|+.++|+| |...||+++.||.|+||.+..+...                .+.......+.+|.          
T Consensus       624 l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~----------------e~~~tPe~~lt~h~----------  677 (1012)
T KOG1445|consen  624 LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP----------------ENEMTPEKILTIHG----------  677 (1012)
T ss_pred             cccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC----------------cccCCcceeeeccc----------
Confidence            44667899999999 6789999999999999998876531                23334456788888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        .+|++++|+|-.. +.|++++.|-+|++||+.+.+....+..|..        .|+       .++|+|+|+.+    
T Consensus       678 --eKI~slRfHPLAa-dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd--------qIf-------~~AWSpdGr~~----  735 (1012)
T KOG1445|consen  678 --EKITSLRFHPLAA-DVLAVASYDSTIELWDLANAKLYSRLVGHTD--------QIF-------GIAWSPDGRRI----  735 (1012)
T ss_pred             --ceEEEEEecchhh-hHhhhhhccceeeeeehhhhhhhheeccCcC--------cee-------EEEECCCCcce----
Confidence              8899999998543 4899999999999999999887777776643        455       79999999998    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE-e----cCCeEEEEeCCCCC
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A----DDLRINLWNLEISN  265 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~----~d~~i~iwd~~~~~  265 (408)
                              ++...||.|++|+ ....+...     +.-...-..+--.|.|.-+|+++++ |    +...|.+||.++-.
T Consensus       736 --------AtVcKDg~~rVy~-Prs~e~pv-----~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  736 --------ATVCKDGTLRVYE-PRSREQPV-----YEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             --------eeeecCceEEEeC-CCCCCCcc-----ccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence                    9999999999998 43322211     1000001122334667789988876 4    35678888877432


Q ss_pred             -ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363          266 -QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA  316 (408)
Q Consensus       266 -~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  316 (408)
                       ..+.+..     +.. ...+.--.+.+|...+|++|-.|..|.+|.+-...
T Consensus       802 ~~pl~t~~-----lDv-aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  802 LRPLYTQV-----LDV-APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             CCcceeee-----ecc-cCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence             1222111     111 11122234566765788999999999999986553

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=2.5e-14  Score=134.32  Aligned_cols=294  Identities=12%  Similarity=0.147  Sum_probs=168.8

Q ss_pred             cCcccceeeecccCcCcccceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcc
Q 015363           12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (408)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~   90 (408)
                      .++..|+.....    ......|...|..++.++. +.+++|||.||+|++|+.......+                ..+
T Consensus      1029 ~p~~gW~p~G~l----VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~----------------~s~ 1088 (1431)
T KOG1240|consen 1029 SPPPGWNPRGIL----VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG----------------GSA 1088 (1431)
T ss_pred             CCCCCCCccceE----eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc----------------cee
Confidence            345557776432    2245678899999998876 5999999999999999986543210                011


Q ss_pred             ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEee
Q 015363           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (408)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  170 (408)
                      +...++....            .++.++..++.  ++.+|+++.||.|++.++.....................|.+.. 
T Consensus      1089 rS~ltys~~~------------sr~~~vt~~~~--~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~- 1153 (1431)
T KOG1240|consen 1089 RSELTYSPEG------------SRVEKVTMCGN--GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVS- 1153 (1431)
T ss_pred             eeeEEEeccC------------CceEEEEeccC--CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEE-
Confidence            1112222122            66888888755  77999999999999999986321111000000000001222221 


Q ss_pred             cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE
Q 015363          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS  250 (408)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~  250 (408)
                           .-++....+-          ..++.+...+.|..|| ..........+     .....+.|++++.+|.+++++.
T Consensus      1154 -----m~a~~~~~~S----------~~lvy~T~~~~iv~~D-~r~~~~~w~lk-----~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1154 -----MHAFTAIVQS----------HVLVYATDLSRIVSWD-TRMRHDAWRLK-----NQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred             -----eecccccccc----------eeEEEEEeccceEEec-chhhhhHHhhh-----cCccccceeEEEecCCceEEEE
Confidence                 1111111110          1236677778889999 43322111111     1233477999999999999999


Q ss_pred             e-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCC--ceEEEEe--CCCeEEEEEcCCCceeccccccc
Q 015363          251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYSS--SKGSIRLIDMRQSALCDTHSKLF  325 (408)
Q Consensus       251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~  325 (408)
                      | ..|.+.+||++ .+..+...      -..+..+++.+..+|..+  ...++++  ..+.|.+|++.++...    .++
T Consensus      1213 Gts~G~l~lWDLR-F~~~i~sw------~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~----~vl 1281 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLR-FRVPILSW------EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ----TVL 1281 (1431)
T ss_pred             ecCCceEEEEEee-cCceeecc------cCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce----EEE
Confidence            9 89999999999 44444332      123447778888777653  4444444  4789999999988432    222


Q ss_pred             ccc-cCCCCcccc------ccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCC
Q 015363          326 EEQ-EAPGTRSFF------TEIIASISDIKFARNGRHILSR-DYMTLKLWDINMD  372 (408)
Q Consensus       326 ~~~-~~~~~~~~~------~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~  372 (408)
                      -.. ..+......      ..+.-......+..-+.++.+| +|..|+.||...+
T Consensus      1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            111 111110000      0111122223333334566665 6899999999764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=2.1e-14  Score=118.88  Aligned_cols=272  Identities=14%  Similarity=0.133  Sum_probs=179.7

Q ss_pred             eeeccceEEEEECCCCC--eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           32 VQEVDIISAIEFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~--~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      +.....|+.++|.-+++  .|...+.+..+..+.+......                 ++...........         
T Consensus        52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~-----------------s~~~~~~~~~l~~---------  105 (412)
T KOG3881|consen   52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS-----------------SSLDDAKTVSLGT---------  105 (412)
T ss_pred             cchhhhhhhheeecCCceeEeeccccCcccccccccCCccc-----------------ccccccccccccc---------
Confidence            44567788888887654  4444446667777776655432                 1100111122222         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-----EEeccCCCCcccCCCCCeEeecCCceeeEEccCCC
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-----KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  184 (408)
                         .+|..++.   .|| .|++|-.+|.+.+|..+.+...     ....+.          .++       .+.-.+...
T Consensus       106 ---~~I~gl~~---~dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~----------g~~-------~~r~~~~~p  161 (412)
T KOG3881|consen  106 ---KSIKGLKL---ADG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP----------GLY-------DVRQTDTDP  161 (412)
T ss_pred             ---ccccchhh---cCC-EEEEEecCCcEEEEeccCCccccccceeeecCC----------cee-------eeccCCCCC
Confidence               56777776   344 7889999999999999855421     111110          011       233333333


Q ss_pred             eeecccccccCccccCCCCC--ceeeeceeeeccccccccccceeecc--ccccceEEEEeCCC--CCEEEEe-cCCeEE
Q 015363          185 CGERNFGCASNDSSFPPGGV--SSLRLPVVVTSQETNLVAGCRRIYAH--AHDYHINSISNNSD--GETFISA-DDLRIN  257 (408)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~--~~~l~~~-~d~~i~  257 (408)
                      .+           +++|+..  ..+++|| +.........+++..-..  .-.-+++++.|-+.  ...||++ .-+.++
T Consensus       162 ~I-----------va~GGke~~n~lkiwd-le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR  229 (412)
T KOG3881|consen  162 YI-----------VATGGKENINELKIWD-LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR  229 (412)
T ss_pred             ce-----------EecCchhcccceeeee-cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence            33           4668888  8899999 655444333333322111  11235778889887  7899999 899999


Q ss_pred             EEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccc
Q 015363          258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF  337 (408)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (408)
                      +||.+....++..+       .-...+++++...|++ +++++|..-+.+..+|++.++...   ..+            
T Consensus       230 ~YDt~~qRRPV~~f-------d~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g---~~~------------  286 (412)
T KOG3881|consen  230 LYDTRHQRRPVAQF-------DFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLG---CGL------------  286 (412)
T ss_pred             EecCcccCcceeEe-------ccccCcceeeeecCCC-cEEEEecccchhheecccCceeec---ccc------------
Confidence            99999777777654       3346779999999999 999999999999999999986542   223            


Q ss_pred             ccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceE
Q 015363          338 TEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKV  389 (408)
Q Consensus       338 ~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~  389 (408)
                      .+..+.|+++..+|.+++|++++ |..|+|+|+.+ .+++............+
T Consensus       287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt-rkll~kvYvKs~lt~il  338 (412)
T KOG3881|consen  287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT-RKLLHKVYVKSRLTFIL  338 (412)
T ss_pred             CCccCCcceEEEcCCCceEEeeccceeEEEeeccc-chhhhhhhhhccccEEE
Confidence            33368899999999999999997 89999999998 56666554444433333

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.66  E-value=3.4e-15  Score=128.31  Aligned_cols=205  Identities=22%  Similarity=0.324  Sum_probs=143.9

Q ss_pred             CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCc
Q 015363           48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA  127 (408)
Q Consensus        48 ~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~  127 (408)
                      ..|+.++.||.+.|.+-...                        ......+|.            +.|.+-+|+|+  |.
T Consensus        76 d~~~i~s~DGkf~il~k~~r------------------------VE~sv~AH~------------~A~~~gRW~~d--Gt  117 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSAR------------------------VERSISAHA------------AAISSGRWSPD--GA  117 (737)
T ss_pred             ceEEEEcCCceEEEecccch------------------------hhhhhhhhh------------hhhhhcccCCC--Cc
Confidence            46888899999999885433                        234677888            77999999655  88


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCcee
Q 015363          128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL  207 (408)
Q Consensus       128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  207 (408)
                      -|++++.||.|++|.-.. ....+...+        ...++       +++|.|+...+           +++.+..-.|
T Consensus       118 gLlt~GEDG~iKiWSrsG-MLRStl~Q~--------~~~v~-------c~~W~p~S~~v-----------l~c~g~h~~I  170 (737)
T KOG1524|consen  118 GLLTAGEDGVIKIWSRSG-MLRSTVVQN--------EESIR-------CARWAPNSNSI-----------VFCQGGHISI  170 (737)
T ss_pred             eeeeecCCceEEEEeccc-hHHHHHhhc--------CceeE-------EEEECCCCCce-----------EEecCCeEEE
Confidence            899999999999998543 222222111        22355       78999988765           3444443333


Q ss_pred             eeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE
Q 015363          208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT  286 (408)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  286 (408)
                      +-..        ...+.++  ..+|++-|.++.|++..+++++| .|-..++||-. +...++        ...|.-+|+
T Consensus       171 KpL~--------~n~k~i~--WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~--------S~~~ey~IT  231 (737)
T KOG1524|consen  171 KPLA--------ANSKIIR--WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFT--------SAAEEYAIT  231 (737)
T ss_pred             eecc--------cccceeE--EeccCcEEEEeecCccccceeecCCceeEEeeccc-Cccccc--------CChhcccee
Confidence            3211        1111111  47999999999999999999999 99999999998 555543        466889999


Q ss_pred             EEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEE
Q 015363          287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLK  365 (408)
Q Consensus       287 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~  365 (408)
                      +++|+|+.  .++.++. .++++=..+                           .+.|..++||+||..++.|. .|.+.
T Consensus       232 Sva~npd~--~~~v~S~-nt~R~~~p~---------------------------~GSifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  232 SVAFNPEK--DYLLWSY-NTARFSSPR---------------------------VGSIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             eeeecccc--ceeeeee-eeeeecCCC---------------------------ccceEEEEEcCCCceeeccccCceEE
Confidence            99999994  6666653 234421111                           26799999999999999984 46654


Q ss_pred             E
Q 015363          366 L  366 (408)
Q Consensus       366 ~  366 (408)
                      +
T Consensus       282 ~  282 (737)
T KOG1524|consen  282 V  282 (737)
T ss_pred             E
Confidence            4

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.65  E-value=8.6e-15  Score=118.49  Aligned_cols=283  Identities=14%  Similarity=0.179  Sum_probs=166.0

Q ss_pred             ccceEEEEECCCCCeEE-EeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLA-TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~-sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      -+.|.-+.|..|..+++ ....++.|.+|++...+.                       ....+...            +
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-----------------------~ckIdeg~------------a   92 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-----------------------YCKIDEGQ------------A   92 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-----------------------EEEeccCC------------C
Confidence            46677889998876555 456788999999876542                       23344444            7


Q ss_pred             ceeEEEEeecCCC-cEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          114 KINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       114 ~v~~v~~~p~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ++.+++|+|+  | ..|.+...|-.|.+|.+.+.+...+.....         .+.       .++|+|+|++.+.+...
T Consensus        93 gls~~~WSPd--grhiL~tseF~lriTVWSL~t~~~~~~~~pK~---------~~k-------g~~f~~dg~f~ai~sRr  154 (447)
T KOG4497|consen   93 GLSSISWSPD--GRHILLTSEFDLRITVWSLNTQKGYLLPHPKT---------NVK-------GYAFHPDGQFCAILSRR  154 (447)
T ss_pred             cceeeeECCC--cceEeeeecceeEEEEEEeccceeEEeccccc---------Cce-------eEEECCCCceeeeeecc
Confidence            7999999866  7 466667789999999999887654332211         111       57999999986332222


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEee
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~  272 (408)
                      ...+++-..    .-+-|.            ..+.+ .-..-..+.+.|+|||+.||+        ||.-..-+.. .  
T Consensus       155 DCkdyv~i~----~c~~W~------------ll~~f-~~dT~DltgieWsPdg~~laV--------wd~~Leykv~-a--  206 (447)
T KOG4497|consen  155 DCKDYVQIS----SCKAWI------------LLKEF-KLDTIDLTGIEWSPDGNWLAV--------WDNVLEYKVY-A--  206 (447)
T ss_pred             cHHHHHHHH----hhHHHH------------HHHhc-CCCcccccCceECCCCcEEEE--------ecchhhheee-e--
Confidence            211110000    000111            11111 223345778999999988874        4433111111 1  


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceec---------------------cccc--------
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD---------------------THSK--------  323 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------------~~~~--------  323 (408)
                           . .-.-.+..++|+|.+ ++|+.|+.|+.+|+.+--+.+...                     .++.        
T Consensus       207 -----Y-e~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf  279 (447)
T KOG4497|consen  207 -----Y-ERGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF  279 (447)
T ss_pred             -----e-eeccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence                 0 112457789999999 999999999999986532221100                     0000        


Q ss_pred             ---ccccccCCC-------------------CccccccccceeEEEEEccCCCEEEEeCC---CeEEEEECCCCCCceee
Q 015363          324 ---LFEEQEAPG-------------------TRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVAT  378 (408)
Q Consensus       324 ---~~~~~~~~~-------------------~~~~~~~h~~~i~~~~~spdg~~l~s~~d---~~v~~wd~~~~~~~~~~  378 (408)
                         .+..|.-+.                   +.. +..-...+.-++|++|..|+++-.|   +.+.+||+++ .+....
T Consensus       280 ~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD-~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~av  357 (447)
T KOG4497|consen  280 TPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD-FPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAV  357 (447)
T ss_pred             CCCccccCccccchhhhhhhhcceeeecccCCCC-CCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhh
Confidence               000000000                   000 1111356788999999999999854   8999999986 344444


Q ss_pred             eeecccccceEEecCCCeeeeeeceeeec
Q 015363          379 FQVHEHLRPKVMHSSKNYFMGLDNIHTLY  407 (408)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  407 (408)
                      +......|...+++-..+++.....-+||
T Consensus       358 LiQk~piraf~WdP~~prL~vctg~srLY  386 (447)
T KOG4497|consen  358 LIQKHPIRAFEWDPGRPRLVVCTGKSRLY  386 (447)
T ss_pred             hhhccceeEEEeCCCCceEEEEcCCceEE
Confidence            44333445566666666666555555555

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=1.9e-14  Score=133.11  Aligned_cols=263  Identities=15%  Similarity=0.198  Sum_probs=164.8

Q ss_pred             ccceEEEEECC--CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           35 VDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        35 ~~~V~~~~~s~--~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      ...|+.+.+-.  |..++.+|+.||.|+||+-.....                  ...++++.+.+-++.   +.. ...
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~------------------~~~eLVTaw~~Ls~~---~~~-~r~ 1166 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW------------------KKPELVTAWSSLSDQ---LPG-ARG 1166 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEeccccccc------------------CCceeEEeecccccc---Ccc-CCC
Confidence            45688888765  456899999999999997332210                  012233333322110   000 000


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceee-EEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK-SYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~l~~~~~  191 (408)
                      .. .-+.|.. ..| +|++++.-+.|+|||.....+..-.......       .+.       ++ +....|..+     
T Consensus      1167 ~~-~v~dWqQ-~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t-------~vT-------aLS~~~~~gn~i----- 1224 (1387)
T KOG1517|consen 1167 TG-LVVDWQQ-QSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSST-------LVT-------ALSADLVHGNII----- 1224 (1387)
T ss_pred             CC-eeeehhh-hCC-eEEecCCeeEEEEEecccceeEeecccCCCc-------cce-------eecccccCCceE-----
Confidence            11 4467753 334 6777777899999999987665543332111       111       11 112234444     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccc--eEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCce
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH--INSISNNSDGE-TFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                             ++|-.||.|++|| .+-...   ...+.. ...|...  |..+.+.+.|- .|++| .+|.|++||++.. ..
T Consensus      1225 -------~AGfaDGsvRvyD-~R~a~~---ds~v~~-~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~ 1291 (1387)
T KOG1517|consen 1225 -------AAGFADGSVRVYD-RRMAPP---DSLVCV-YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SK 1291 (1387)
T ss_pred             -------EEeecCCceEEee-cccCCc---ccccee-ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cc
Confidence                   9999999999999 332111   122222 2667666  99999998774 48888 9999999999953 22


Q ss_pred             eeEeecCCCcccCCc--C-CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          268 FNIVDVKPANMEDLT--E-VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~--~-~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      .....     +..|.  + .++++..++.. .++|+|+. +.|+||++.....     ..+..+     ..++..-.+.+
T Consensus      1292 e~~~~-----iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l-----~~~k~n-----~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1292 ETFLT-----IVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQL-----NIIKYN-----PGFMGQRIGSV 1354 (1387)
T ss_pred             cccce-----eeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhh-----cccccC-----cccccCcCCCc
Confidence            22211     22222  3 48999999999 89999988 9999999976543     223222     11222234678


Q ss_pred             EEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          345 SDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       345 ~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      .+++|+|.-.+||+|+ |.+|.||....
T Consensus      1355 scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             ceeeecchhHhhhhccCCceEEEeecCC
Confidence            9999999988999995 69999998865

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=3.6e-15  Score=128.89  Aligned_cols=222  Identities=14%  Similarity=0.150  Sum_probs=141.0

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .+.+|.++|.|+++.+++..+++|+-||+|+.|++......      .+       .+-.......+.||.         
T Consensus       339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp------~d-------s~dp~vl~~~l~Ght---------  396 (577)
T KOG0642|consen  339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP------DD-------SYDPSVLSGTLLGHT---------  396 (577)
T ss_pred             EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc------cc-------ccCcchhccceeccc---------
Confidence            45689999999999999999999999999999987632210      00       000112334678888         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         +.|..+++++.+  ..|++++.||+++.|+...... .++......      +.       +..+.+......+   
T Consensus       397 ---davw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~------g~-------Plsvd~~ss~~a~---  454 (577)
T KOG0642|consen  397 ---DAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH------GY-------PLSVDRTSSRPAH---  454 (577)
T ss_pred             ---cceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCcccc------CC-------cceEeeccchhHh---
Confidence               889999998764  4899999999999999887665 222211110      00       0012221111000   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceee---ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY---AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                              .++....+.-.+++    .+....-......   .......++-+.++|...+.+++ .|+.|+++|..+..
T Consensus       455 --------~~~s~~~~~~~~~~----~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  455 --------SLASFRFGYTSIDD----MEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             --------hhhhcccccccchh----hhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence                    01111111111111    1110000000000   01112457778899999999999 99999999998554


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA  316 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  316 (408)
                      ....        ...|...++++++.|+| -+|++++.|+.+++|.+....
T Consensus       523 ~l~s--------~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  523 ILHS--------MVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             cchh--------eeeccceecceeecCCC-ceEEeecCCceeehhhccchh
Confidence            4432        56788999999999999 899999999999999987653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=4.2e-13  Score=108.39  Aligned_cols=238  Identities=13%  Similarity=0.178  Sum_probs=147.1

Q ss_pred             eEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeE
Q 015363           38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK  117 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  117 (408)
                      ..+++|+.|..-+++|..+| .+||+.+.-...                       ...+.+.+-          -.+..
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~-----------------------~~r~~~~~G----------~~~ve   53 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES-----------------------ASRQFIDGG----------FKIVE   53 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhh-----------------------hhhccccCc----------hhhhh
Confidence            34599999988888887765 899998743321                       011111100          11333


Q ss_pred             EEEeecCCCcEEEE-EeC------CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          118 IRWCQSANSALYLL-STN------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       118 v~~~p~~~~~~l~~-~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      +-|  ..|  ++|. |+.      -+.|.|||=...++...+....         .|.       .+.+.++.       
T Consensus        54 MLf--R~N--~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~---------~I~-------~V~l~r~r-------  106 (346)
T KOG2111|consen   54 MLF--RSN--YLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNS---------EIK-------AVKLRRDR-------  106 (346)
T ss_pred             Hhh--hhc--eEEEecCCCCCCCCCceEEEEecccCcEEEEEEecc---------cee-------eEEEcCCe-------
Confidence            334  222  4443 332      2479999966666666555532         233       34444443       


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE-e-cCCeEEEEeCCCCCce-
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQS-  267 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~-  267 (408)
                              ++.-..+.|.+|. ....-.  ...+..+  ......+.+++-+-+..+||. | .-|.|+|-|+...... 
T Consensus       107 --------iVvvl~~~I~Vyt-F~~n~k--~l~~~et--~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~  173 (346)
T KOG2111|consen  107 --------IVVVLENKIYVYT-FPDNPK--LLHVIET--RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA  173 (346)
T ss_pred             --------EEEEecCeEEEEE-cCCChh--heeeeec--ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCC
Confidence                    2223456677776 321100  0001111  111223444443334455554 4 6799999999854431 


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe-EEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      ..+       +..|...|.|++.+-+| .++|+++..|+ |||||..++..+    .++.....          ...|.+
T Consensus       174 p~~-------I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l----~E~RRG~d----------~A~iy~  231 (346)
T KOG2111|consen  174 PSI-------INAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLL----QELRRGVD----------RADIYC  231 (346)
T ss_pred             ceE-------EEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEe----eeeecCCc----------hheEEE
Confidence            122       67899999999999999 99999999886 899999999765    44433211          257999


Q ss_pred             EEEccCCCEEEEeCC-CeEEEEECCC
Q 015363          347 IKFARNGRHILSRDY-MTLKLWDINM  371 (408)
Q Consensus       347 ~~~spdg~~l~s~~d-~~v~~wd~~~  371 (408)
                      ++||||+.+|++++| |+|.||.++.
T Consensus       232 iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  232 IAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEeCCCccEEEEEcCCCeEEEEEeec
Confidence            999999999999998 9999999975

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=2.3e-14  Score=130.17  Aligned_cols=218  Identities=11%  Similarity=0.151  Sum_probs=138.0

Q ss_pred             eeeccceEEEEECCCCCeEEEeecC---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ..|...|.+++|||||+.||..+.+   ..|++||+.++...                     .+..+.+|         
T Consensus       200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~---------------------~l~~~~g~---------  249 (429)
T PRK01742        200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK---------------------VVASFRGH---------  249 (429)
T ss_pred             ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE---------------------EEecCCCc---------
Confidence            4567789999999999999988754   36999998776421                     22223333         


Q ss_pred             cccccceeEEEEeecCCCcEEEEEe-CCCeEEEE--EcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          109 LEIEEKINKIRWCQSANSALYLLST-NDKTIKLW--KVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                            ...++|+|+  |+.|+.++ .+|.+.||  |+.+++........         +.+.       ...|+|||+.
T Consensus       250 ------~~~~~wSPD--G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~---------~~~~-------~~~wSpDG~~  305 (429)
T PRK01742        250 ------NGAPAFSPD--GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGA---------GNNT-------EPSWSPDGQS  305 (429)
T ss_pred             ------cCceeECCC--CCEEEEEEecCCcEEEEEEECCCCCeEeeccCC---------CCcC-------CEEECCCCCE
Confidence                  346899755  88888764 68866655  66666544432211         1111       5799999997


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCC
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS  264 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~  264 (408)
                      +           +++...++...+|+ +......     ... . .+..  ...+|+|+|+.++.. .+ .+.+||+.++
T Consensus       306 i-----------~f~s~~~g~~~I~~-~~~~~~~-----~~~-l-~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g  363 (429)
T PRK01742        306 I-----------LFTSDRSGSPQVYR-MSASGGG-----ASL-V-GGRG--YSAQISADGKTLVMINGD-NVVKQDLTSG  363 (429)
T ss_pred             E-----------EEEECCCCCceEEE-EECCCCC-----eEE-e-cCCC--CCccCCCCCCEEEEEcCC-CEEEEECCCC
Confidence            6           34555677888887 4321110     111 1 2222  357899999999887 54 4666999844


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC--CCceecccccccccccCCCCccccccccc
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR--QSALCDTHSKLFEEQEAPGTRSFFTEIIA  342 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  342 (408)
                      .. ..+       ...+  ....+.|+|+| ++|++++.++.+.+|++.  .+...    +.+..+            .+
T Consensus       364 ~~-~~l-------t~~~--~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~G~~~----~~l~~~------------~g  416 (429)
T PRK01742        364 ST-EVL-------SSTF--LDESPSISPNG-IMIIYSSTQGLGKVLQLVSADGRFK----ARLPGS------------DG  416 (429)
T ss_pred             Ce-EEe-------cCCC--CCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCce----EEccCC------------CC
Confidence            32 221       1111  12467899999 899999889988888763  33222    444444            35


Q ss_pred             eeEEEEEccC
Q 015363          343 SISDIKFARN  352 (408)
Q Consensus       343 ~i~~~~~spd  352 (408)
                      .+...+|+|-
T Consensus       417 ~~~~p~wsp~  426 (429)
T PRK01742        417 QVKFPAWSPY  426 (429)
T ss_pred             CCCCcccCCC
Confidence            6788899983

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.63  E-value=1.4e-14  Score=124.67  Aligned_cols=176  Identities=12%  Similarity=0.177  Sum_probs=128.6

Q ss_pred             cEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCce
Q 015363          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS  206 (408)
Q Consensus       127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  206 (408)
                      +.|+.++.||.+.+.+-. ++.......|.        +.+.       +-.|+|+|.-+            ++.++||.
T Consensus        76 d~~~i~s~DGkf~il~k~-~rVE~sv~AH~--------~A~~-------~gRW~~dGtgL------------lt~GEDG~  127 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS-ARVERSISAHA--------AAIS-------SGRWSPDGAGL------------LTAGEDGV  127 (737)
T ss_pred             ceEEEEcCCceEEEeccc-chhhhhhhhhh--------hhhh-------hcccCCCCcee------------eeecCCce
Confidence            478899999999987643 33333333321        2222       56799999998            99999999


Q ss_pred             eeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE
Q 015363          207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT  286 (408)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  286 (408)
                      |++|. -.+       ..+.+ +......|+|++|.|+.+.++-+..+.+.|=.+....+.++        ...|.+-|.
T Consensus       128 iKiWS-rsG-------MLRSt-l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~--------WkAHDGiiL  190 (737)
T KOG1524|consen  128 IKIWS-RSG-------MLRST-VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIR--------WRAHDGLVL  190 (737)
T ss_pred             EEEEe-ccc-------hHHHH-HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeE--------EeccCcEEE
Confidence            99998 222       22222 23445789999999999888888667777776664444443        678999999


Q ss_pred             EEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEE
Q 015363          287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL  366 (408)
Q Consensus       287 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~  366 (408)
                      ++.|+|.. .++++|+.|-..++||.....+     ..-..|            .-+|++++|.|| +.++.++.+++++
T Consensus       191 ~~~W~~~s-~lI~sgGED~kfKvWD~~G~~L-----f~S~~~------------ey~ITSva~npd-~~~~v~S~nt~R~  251 (737)
T KOG1524|consen  191 SLSWSTQS-NIIASGGEDFRFKIWDAQGANL-----FTSAAE------------EYAITSVAFNPE-KDYLLWSYNTARF  251 (737)
T ss_pred             EeecCccc-cceeecCCceeEEeecccCccc-----ccCChh------------ccceeeeeeccc-cceeeeeeeeeee
Confidence            99999999 9999999999999999865422     343444            357999999999 6666676666664

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2e-13  Score=112.05  Aligned_cols=262  Identities=13%  Similarity=0.153  Sum_probs=159.4

Q ss_pred             ccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           35 VDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        35 ~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      ...|+|++|-|. +.-|+.|++.| |.||..+.....+..++-+....         -.+....+|             -
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~---------~qvl~~pgh-------------~  196 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHH---------LQVLQDPGH-------------N  196 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccc---------hhheeCCCC-------------c
Confidence            457999999996 66899998874 78998764432111111000000         001122333             4


Q ss_pred             ceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          114 KINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      +|+++.|.  +||..+++++ .|..|.|||..++.........        .+.+.       .+.|+|||..+      
T Consensus       197 pVtsmqwn--~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g--------lgg~s-------lLkwSPdgd~l------  253 (445)
T KOG2139|consen  197 PVTSMQWN--EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG--------LGGFS-------LLKWSPDGDVL------  253 (445)
T ss_pred             eeeEEEEc--CCCCEEeecccCcceEEEEcCCCCCcccccccC--------CCcee-------eEEEcCCCCEE------
Confidence            69999995  5588999887 6789999999999877665222        12222       58999999998      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceee---
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN---  269 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~---  269 (408)
                            +++.-|+..++|+ ..+.-....    .   .-..+.|....|+|.|++|.-+..+.-++|.+.-.++...   
T Consensus       254 ------faAt~davfrlw~-e~q~wt~er----w---~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~  319 (445)
T KOG2139|consen  254 ------FAATCDAVFRLWQ-ENQSWTKER----W---ILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLR  319 (445)
T ss_pred             ------EEecccceeeeeh-hcccceecc----e---eccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccC
Confidence                  9999999999996 333221111    1   1222489999999999988776444445565542222111   


Q ss_pred             ---------EeecCCCcccCC----cCCeEEEEEcCCCCceEEEEeCCC--------eEEEEEcCCCceecccccccccc
Q 015363          270 ---------IVDVKPANMEDL----TEVITSAEFHPTHCNMLAYSSSKG--------SIRLIDMRQSALCDTHSKLFEEQ  328 (408)
Q Consensus       270 ---------~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~  328 (408)
                               +.++...+....    .+.+.+++|+|.| .+||+.-..+        .|.+||.+..-.+.-...-+.+.
T Consensus       320 ~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~g  398 (445)
T KOG2139|consen  320 PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGG  398 (445)
T ss_pred             cccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccC
Confidence                     111111111111    4667899999999 8888765433        46778877543321000011111


Q ss_pred             cCCCCccccccccceeEEEEEcc---CCCEEEEe-CCCeEEEEECC
Q 015363          329 EAPGTRSFFTEIIASISDIKFAR---NGRHILSR-DYMTLKLWDIN  370 (408)
Q Consensus       329 ~~~~~~~~~~~h~~~i~~~~~sp---dg~~l~s~-~d~~v~~wd~~  370 (408)
                                   .....++|+|   +|.+|..+ +.|.+.-|++.
T Consensus       399 -------------e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  399 -------------EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             -------------CCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence                         1134466666   67788888 56888888875

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.62  E-value=5.5e-14  Score=112.32  Aligned_cols=116  Identities=16%  Similarity=0.369  Sum_probs=87.0

Q ss_pred             ccceEEEEeCCCCCEEEE--e-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC---CCe
Q 015363          233 DYHINSISNNSDGETFIS--A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGS  306 (408)
Q Consensus       233 ~~~v~~i~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~  306 (408)
                      .+.|.+++|+|+|+.||+  | .+..|.+||++ ......        +  +...+..+.|+|+| ++|++++.   .|.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~--------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G~  126 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFS--------F--GTQPRNTISWSPDG-RFLVLAGFGNLNGD  126 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEe--------e--cCCCceEEEECCCC-CEEEEEEccCCCcE
Confidence            356999999999998765  4 57899999997 333332        2  24567889999999 88888764   467


Q ss_pred             EEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe--C-----CCeEEEEECCCCCCceeee
Q 015363          307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D-----YMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~-----d~~v~~wd~~~~~~~~~~~  379 (408)
                      |.+||+++.+.+    ...+.              ..+..++|+|||++|+++  .     |+.++||+..  |+.+...
T Consensus       127 l~~wd~~~~~~i----~~~~~--------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~~~  186 (194)
T PF08662_consen  127 LEFWDVRKKKKI----STFEH--------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLYKK  186 (194)
T ss_pred             EEEEECCCCEEe----ecccc--------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeEec
Confidence            999999977543    33322              347899999999999986  2     5889999994  6666554


Q ss_pred             e
Q 015363          380 Q  380 (408)
Q Consensus       380 ~  380 (408)
                      .
T Consensus       187 ~  187 (194)
T PF08662_consen  187 P  187 (194)
T ss_pred             c
Confidence            3

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.62  E-value=2.2e-12  Score=118.07  Aligned_cols=255  Identities=20%  Similarity=0.379  Sum_probs=177.2

Q ss_pred             cceeeccceEEEEECCCCCeEEEeec-CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ....|...|.+++|+|++.++++++. ++.+++|+.....                       ....+.+|.        
T Consensus       150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~--------  198 (466)
T COG2319         150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-----------------------PLSTLAGHT--------  198 (466)
T ss_pred             EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-----------------------eEEeeccCC--------
Confidence            45679999999999999998999885 9999999987633                       234566677        


Q ss_pred             cccccceeEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEEE-EeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          109 LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                          ..|.+++|+|.  +. .+++++.|+.|++||...+.... .+..+...       . .        ..|++++..+
T Consensus       199 ----~~v~~~~~~~~--~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-------~-~--------~~~~~~~~~~  256 (466)
T COG2319         199 ----DPVSSLAFSPD--GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS-------V-V--------SSFSPDGSLL  256 (466)
T ss_pred             ----CceEEEEEcCC--cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc-------e-e--------EeECCCCCEE
Confidence                77999999744  65 45555999999999888666665 34333221       0 1        1688888665


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                  ++++.++.+++|+ +.....     ..... ..|...+.++.|+|++..++++ .|+.+.+||.....
T Consensus       257 ------------~~~~~d~~~~~~~-~~~~~~-----~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  317 (466)
T COG2319         257 ------------ASGSSDGTIRLWD-LRSSSS-----LLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK  317 (466)
T ss_pred             ------------EEecCCCcEEEee-ecCCCc-----EEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence                        7899999999999 443222     12222 5678899999999988888887 67889999888444


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEE-eCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      ......      ...|...+..+.|.+++ ..++.+ ..|+.+.+|++......    ......             ..+
T Consensus       318 ~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~-------------~~~  373 (466)
T COG2319         318 LLSSLT------LKGHEGPVSSLSFSPDG-SLLVSGGSDDGTIRLWDLRTGKPL----KTLEGH-------------SNV  373 (466)
T ss_pred             eEEEee------ecccCCceEEEEECCCC-CEEEEeecCCCcEEeeecCCCcee----EEecCC-------------ceE
Confidence            333221      23566678899994342 344444 67899999999876411    121111             227


Q ss_pred             EEEEEccCCCEEEE-e-CCCeEEEEECCCCCCceeeeeec
Q 015363          345 SDIKFARNGRHILS-R-DYMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       345 ~~~~~spdg~~l~s-~-~d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      ..+.+++ ...+++ + .++.+.+|+... .........+
T Consensus       374 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  411 (466)
T COG2319         374 LSVSFSP-DGRVVSSGSTDGTVRLWDLST-GSLLRNLDGH  411 (466)
T ss_pred             EEEEECC-CCCEEEEecCCCceEEEeccc-CeeeeeccCC
Confidence            8889988 544444 4 469999999987 4555555444

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=2.7e-14  Score=116.13  Aligned_cols=227  Identities=11%  Similarity=0.188  Sum_probs=148.2

Q ss_pred             cceeeccceEEEEECC--CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           30 EEVQEVDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~--~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      +...|...++.++|..  ....+.+|+.||+|++||+......                     ....+..+.+      
T Consensus        65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~---------------------a~~~~~~~~~------  117 (376)
T KOG1188|consen   65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES---------------------ARISWTQQSG------  117 (376)
T ss_pred             eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh---------------------hheeccCCCC------
Confidence            4556788888999987  4678999999999999999876542                     1122333321      


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEe----CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  183 (408)
                           .+-.+++.  +.++..+++|.    .|-.|.+||++..+..                                  
T Consensus       118 -----~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~----------------------------------  156 (376)
T KOG1188|consen  118 -----TPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQL----------------------------------  156 (376)
T ss_pred             -----CcceEeec--cCcCCeEEeccccccCceEEEEEEeccccch----------------------------------
Confidence                 23445554  33455666653    4556667776644311                                  


Q ss_pred             CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeC
Q 015363          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNL  261 (408)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~  261 (408)
                                                               ++.+...|...|+++.|+|.. ++|++| .||.|.+||+
T Consensus       157 -----------------------------------------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  157 -----------------------------------------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             -----------------------------------------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence                                                     111237888999999999976 788888 8999999999


Q ss_pred             CCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceec---cc-------------cccc
Q 015363          262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD---TH-------------SKLF  325 (408)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~-------------~~~~  325 (408)
                      ......-.+.     ..-.|...|.++.|..++-..+.+-+...+..+|+++.+....   ++             .+.+
T Consensus       196 ~~d~EeDaL~-----~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I  270 (376)
T KOG1188|consen  196 KKDNEEDALL-----HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI  270 (376)
T ss_pred             CCCcchhhHH-----HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence            8543221111     1234667799999998874568888889999999987663210   00             0011


Q ss_pred             cccc-----------------------------CCCCcccccc-ccceeEEEEEccCCCEEEEeC-CCeEEEEECC
Q 015363          326 EEQE-----------------------------APGTRSFFTE-IIASISDIKFARNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       326 ~~~~-----------------------------~~~~~~~~~~-h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~  370 (408)
                      ..|.                             .......+++ |..-|+++.|...+.++.+|+ ||.+.+|...
T Consensus       271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  271 NEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             ecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            1110                             0011222343 667788888888889999986 7999999953

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.62  E-value=2.7e-12  Score=113.18  Aligned_cols=216  Identities=12%  Similarity=0.139  Sum_probs=128.7

Q ss_pred             ceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          114 KINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      ....++++|+  +++|++++ .++.|.+|++.. +..........       .       ..+..+.++|+++.+     
T Consensus        36 ~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-------~-------~~p~~i~~~~~g~~l-----   94 (330)
T PRK11028         36 QVQPMVISPD--KRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-------P-------GSPTHISTDHQGRFL-----   94 (330)
T ss_pred             CCccEEECCC--CCEEEEEECCCCcEEEEEECCCCceEEeeeecC-------C-------CCceEEEECCCCCEE-----
Confidence            3667889654  77776654 688999999973 33322211110       0       012258999999987     


Q ss_pred             cccCccccC-CCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCcee
Q 015363          192 CASNDSSFP-PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSF  268 (408)
Q Consensus       192 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~  268 (408)
                             ++ ...++.|.+|+ +..... . ......+  .+......++++|++++++++  .++.|.+||++..+...
T Consensus        95 -------~v~~~~~~~v~v~~-~~~~g~-~-~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~  162 (330)
T PRK11028         95 -------FSASYNANCVSVSP-LDKDGI-P-VAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV  162 (330)
T ss_pred             -------EEEEcCCCeEEEEE-ECCCCC-C-CCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence                   44 34578999998 532111 1 1111111  122346778899999988765  68999999998533221


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CCeEEEEEcCCC--ceecccccccccccCCCCccccccccceeE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQS--ALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      .... ....... ......+.|+|++ ++++++.. +++|.+|++...  ..  +.+..+.....     .+. +.....
T Consensus       163 ~~~~-~~~~~~~-g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~--~~~~~~~~~p~-----~~~-~~~~~~  231 (330)
T PRK11028        163 AQEP-AEVTTVE-GAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEI--ECVQTLDMMPA-----DFS-DTRWAA  231 (330)
T ss_pred             ccCC-CceecCC-CCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCE--EEEEEEecCCC-----cCC-CCccce
Confidence            1000 0000111 2335789999999 77766665 899999999742  21  11122211100     000 012345


Q ss_pred             EEEEccCCCEEEEeC--CCeEEEEECCCCC
Q 015363          346 DIKFARNGRHILSRD--YMTLKLWDINMDS  373 (408)
Q Consensus       346 ~~~~spdg~~l~s~~--d~~v~~wd~~~~~  373 (408)
                      .+.|+|+|++|+++.  ++.|.+|+++..+
T Consensus       232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~  261 (330)
T PRK11028        232 DIHITPDGRHLYACDRTASLISVFSVSEDG  261 (330)
T ss_pred             eEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence            689999999999883  4899999997643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.61  E-value=9.2e-14  Score=109.21  Aligned_cols=261  Identities=14%  Similarity=0.153  Sum_probs=150.3

Q ss_pred             CcccceeeecccCcCccc-ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCC----------CCCccccccccc
Q 015363           13 QPLEWKFSQVFGERTAGE-EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD----------NGGQRRDLEMMD   81 (408)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~-~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~----------~~~~~~~~~~~~   81 (408)
                      -...|.+..   ++.... ...|...|+.+..-|++ .|.+-++|+.+.+|++.....          .+.|+..+....
T Consensus        36 ~V~~w~lqt---~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~  111 (323)
T KOG0322|consen   36 IVKMWVLQT---ERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKP  111 (323)
T ss_pred             eEEEEEeec---CccchhhhhhccceeeceeecCCc-chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCC
Confidence            344566664   222222 23578899999999885 488888999999999986331          123333221111


Q ss_pred             cc---ccCCCccceeeeeccCCccc------c--cccccccccceeEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEE
Q 015363           82 YS---MSRHPEFRYKTEFQSHEPEF------D--YLKSLEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVK  149 (408)
Q Consensus        82 ~~---~~~~p~~~~~~~~~~h~~~~------~--~~~~~~~~~~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~  149 (408)
                      ..   ..+.|.-..   ..-|..+.      .  .-......+.+.+..|--..... ++++|-++|.+.+||+.++...
T Consensus       112 k~~eqll~yp~rgs---de~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~  188 (323)
T KOG0322|consen  112 KNSEQLLEYPSRGS---DETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI  188 (323)
T ss_pred             CcchhheecCCccc---chhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee
Confidence            10   001110000   00000000      0  00001222556666653222222 3455669999999999988433


Q ss_pred             EEeccCCCC--cccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccccccccccee
Q 015363          150 KVFDWNVHP--EKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI  227 (408)
Q Consensus       150 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  227 (408)
                      ..+......  ......+.+.       ++.+.+.-..=            ++++.+..+..|. +....+....   +.
T Consensus       189 ~~~~~~~kv~~~~ash~qpvl-------sldyas~~~rG------------isgga~dkl~~~S-l~~s~gslq~---~~  245 (323)
T KOG0322|consen  189 IQLPQSSKVESPNASHKQPVL-------SLDYASSCDRG------------ISGGADDKLVMYS-LNHSTGSLQI---RK  245 (323)
T ss_pred             eccccccccccchhhccCcce-------eeeechhhcCC------------cCCCccccceeee-eccccCcccc---cc
Confidence            222211110  0111122233       44554332221            7788888888888 5443221111   11


Q ss_pred             eccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe
Q 015363          228 YAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  306 (408)
Q Consensus       228 ~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  306 (408)
                      ...-....|..+...||++++|++ .|++|++|+.++. ..+.+       +.-|...|++++|+|+. .++|+++.|++
T Consensus       246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAV-------LkyHsagvn~vAfspd~-~lmAaaskD~r  316 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAV-------LKYHSAGVNAVAFSPDC-ELMAAASKDAR  316 (323)
T ss_pred             eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-Cchhh-------hhhhhcceeEEEeCCCC-chhhhccCCce
Confidence            112233568889999999999998 9999999999954 44443       67799999999999998 89999999999


Q ss_pred             EEEEEc
Q 015363          307 IRLIDM  312 (408)
Q Consensus       307 i~iwd~  312 (408)
                      |.+|++
T Consensus       317 ISLWkL  322 (323)
T KOG0322|consen  317 ISLWKL  322 (323)
T ss_pred             EEeeec
Confidence            999986

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=5.2e-14  Score=116.62  Aligned_cols=291  Identities=11%  Similarity=0.096  Sum_probs=180.3

Q ss_pred             CcccceeeecccCcC----cccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCC
Q 015363           13 QPLEWKFSQVFGERT----AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHP   88 (408)
Q Consensus        13 ~~~~w~~~~~~~~~~----~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p   88 (408)
                      -.+.|.+.+..-.+.    ......|...|.|++|+...++|++|..+++|.+.|+++.+..                  
T Consensus        79 ~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi------------------  140 (609)
T KOG4227|consen   79 HGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI------------------  140 (609)
T ss_pred             eeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceee------------------
Confidence            346788887643332    2233457899999999999999999999999999999887642                  


Q ss_pred             ccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-E-EEEeccCCCCcccCCCCC
Q 015363           89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-V-KKVFDWNVHPEKAAGNGP  166 (408)
Q Consensus        89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~-~~~~~~~~~~~~~~~~~~  166 (408)
                            ....|+.         -.+.|..+.-+|.  ...|++.+.++.|.+||.+... . ..++..+..       ..
T Consensus       141 ------~V~~~~~---------~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~-------~~  196 (609)
T KOG4227|consen  141 ------YVANENN---------NRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG-------KN  196 (609)
T ss_pred             ------eeecccC---------cccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCC-------cc
Confidence                  2222321         0157999999887  4589999999999999998654 1 111111110       01


Q ss_pred             eEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC
Q 015363          167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE  246 (408)
Q Consensus       167 v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  246 (408)
                      .+       .+.|+|....|           +++.+..+-+.+|| .+.............-++.....-.++.|+|.|+
T Consensus       197 F~-------t~~F~P~~P~L-----------i~~~~~~~G~~~~D-~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~  257 (609)
T KOG4227|consen  197 FY-------TAEFHPETPAL-----------ILVNSETGGPNVFD-RRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN  257 (609)
T ss_pred             ce-------eeeecCCCcee-----------EEeccccCCCCcee-eccccchHHhhhccccCcccchhhhheeeCCCCC
Confidence            12       46677766544           57788888899999 4432221111100000122122335778999999


Q ss_pred             EEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccc
Q 015363          247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF  325 (408)
Q Consensus       247 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  325 (408)
                      .|.+- ....-.+||+-.....+-..+..+..+ .....+.+++|.-+  +.+++|+.+-.|++|.+.......  -.+-
T Consensus       258 Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY-~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~--G~~~  332 (609)
T KOG4227|consen  258 QFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY-CNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSY--GFTQ  332 (609)
T ss_pred             eehhhhccCCCEEeeeecccceeEeccCCCCcc-eeeeeeeeeeeecc--eeeeccCcccceEEEecCCCcccc--Cccc
Confidence            88876 555566788873232222111111000 01234567888766  469999999999999886432110  0111


Q ss_pred             ccccC---------CCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363          326 EEQEA---------PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       326 ~~~~~---------~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~  369 (408)
                      .+|..         .....++.+|.+-++.+.|+|...+|++.+ .+.++||.-
T Consensus       333 IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  333 IGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             cCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence            12210         112344678889999999999988888776 699999954

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.61  E-value=4.8e-14  Score=121.34  Aligned_cols=92  Identities=10%  Similarity=0.193  Sum_probs=75.5

Q ss_pred             cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363          234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  312 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  312 (408)
                      ..|+.++|+|||++||+. .||.++|||..+ ...+-+       +...-+...|++|+||| +++++|+.|..|.||.+
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~-------mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf  361 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGV-------MKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSF  361 (636)
T ss_pred             ccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHH-------HHhhccceEEEEEcCCc-cEEEecCCcceEEEEEe
Confidence            579999999999999998 999999999983 333322       34456778999999999 99999999999999999


Q ss_pred             CCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                      ...+.+    .--+            +|.++|..|+|.
T Consensus       362 ~erRVV----ARGq------------GHkSWVs~VaFD  383 (636)
T KOG2394|consen  362 EERRVV----ARGQ------------GHKSWVSVVAFD  383 (636)
T ss_pred             ccceEE----Eecc------------ccccceeeEeec
Confidence            987655    2333            446899999998

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.60  E-value=1e-12  Score=116.30  Aligned_cols=236  Identities=14%  Similarity=0.219  Sum_probs=147.3

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCC-CCcccccccccccccCCCccceeeeeccCCcccccc--
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDN-GGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL--  106 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~--  106 (408)
                      ...+|.+.|+|++|+.||+++|+|+.|..|.||+.+-.... -+....++    -+.+.|-...+.+..-.  +|...  
T Consensus        48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQ----CMsFNP~~h~LasCsLs--dFglWS~  121 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQ----CMSFNPITHQLASCSLS--DFGLWSP  121 (1081)
T ss_pred             ccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeee----EeecCchHHHhhhcchh--hccccCh
Confidence            34689999999999999999999999999999985432210 00000000    12233322211111000  00000  


Q ss_pred             -----cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc
Q 015363          107 -----KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA  181 (408)
Q Consensus       107 -----~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  181 (408)
                           .......+|.+.+|  +.||++|+.|-.||+|.+-+-...+ ...+..+..+     +.+++       +++|+|
T Consensus       122 ~qK~V~K~kss~R~~~CsW--tnDGqylalG~~nGTIsiRNk~gEe-k~~I~Rpgg~-----Nspiw-------si~~~p  186 (1081)
T KOG1538|consen  122 EQKSVSKHKSSSRIICCSW--TNDGQYLALGMFNGTISIRNKNGEE-KVKIERPGGS-----NSPIW-------SICWNP  186 (1081)
T ss_pred             hhhhHHhhhhheeEEEeee--cCCCcEEEEeccCceEEeecCCCCc-ceEEeCCCCC-----CCCce-------EEEecC
Confidence                 00123367888889  5679999999999999998654333 3333333322     55677       788888


Q ss_pred             CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEe
Q 015363          182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN  260 (408)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd  260 (408)
                      ....       ...+.+.......++..|. +.+.   ..++.     ..-.....|+.+.++|.++..| .|+.+++|-
T Consensus       187 ~sg~-------G~~di~aV~DW~qTLSFy~-LsG~---~Igk~-----r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT  250 (1081)
T KOG1538|consen  187 SSGE-------GRNDILAVADWGQTLSFYQ-LSGK---QIGKD-----RALNFDPCCISYFTNGEYILLGGSDKQLSLFT  250 (1081)
T ss_pred             CCCC-------CccceEEEEeccceeEEEE-ecce---eeccc-----ccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence            6531       1122234455555666555 3221   11111     1122445688999999999998 999999997


Q ss_pred             CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363          261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  312 (408)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  312 (408)
                      -+ +- .+-       +......+|+.++..|++ +.++.|+.||+|..|++
T Consensus       251 R~-Gv-rLG-------Tvg~~D~WIWtV~~~PNs-Q~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  251 RD-GV-RLG-------TVGEQDSWIWTVQAKPNS-QYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ec-Ce-EEe-------eccccceeEEEEEEccCC-ceEEEEEccCeeehhhh
Confidence            65 22 221       244467899999999999 99999999999999975

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.59  E-value=8e-13  Score=119.73  Aligned_cols=237  Identities=10%  Similarity=0.075  Sum_probs=146.1

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEE--EeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK--VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      ..|.++.|+|... .+++.|..+|.|.+||++.+....  .......    .....+.       .+.|..+...     
T Consensus       243 s~v~~~~f~p~~p-~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~----sh~~~v~-------~vvW~~~~~~-----  305 (555)
T KOG1587|consen  243 SEVTCLKFCPFDP-NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEV----SHSEPVT-------AVVWLQNEHN-----  305 (555)
T ss_pred             CceeEEEeccCCc-ceEEeeccCceEEEEEccCCCCCCCcccccccc----cCCcCeE-------EEEEeccCCC-----
Confidence            6699999998643 588899999999999999776522  1111111    1122232       4566543332     


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeec-----cccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCC
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-----HAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEI  263 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~  263 (408)
                           .-+++++.||.|..|+ +..........+.....     ......+++++|.+.. ..|+.| ++|.|.--+...
T Consensus       306 -----~~f~s~ssDG~i~~W~-~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  306 -----TEFFSLSSDGSICSWD-TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             -----CceEEEecCCcEeeee-ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence                 1138888899999998 54422211111111110     1223458889998865 567778 899887633331


Q ss_pred             CCcee-eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccc
Q 015363          264 SNQSF-NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA  342 (408)
Q Consensus       264 ~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  342 (408)
                      ..... ..++. ...+..|.+.|+++.++|-++..|++++ |-+++||......   .|+..+..+            ..
T Consensus       380 ~~~~~~~~~~~-~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~---~Pl~~~~~~------------~~  442 (555)
T KOG1587|consen  380 YTPAPEVSYKG-HSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA---SPLLSLDSS------------PD  442 (555)
T ss_pred             Ccccccccccc-cccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC---Ccchhhhhc------------cc
Confidence            22111 11110 0136678999999999999977777776 9999999877321   333455444            35


Q ss_pred             eeEEEEEccCCC-EEEEeC-CCeEEEEECCCC-CCceeeeeecccccceE
Q 015363          343 SISDIKFARNGR-HILSRD-YMTLKLWDINMD-SGPVATFQVHEHLRPKV  389 (408)
Q Consensus       343 ~i~~~~~spdg~-~l~s~~-d~~v~~wd~~~~-~~~~~~~~~~~~~~~~~  389 (408)
                      .|.+++|||--. .+++++ ||.|.+||+... ..++.+...+......+
T Consensus       443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~  492 (555)
T KOG1587|consen  443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRV  492 (555)
T ss_pred             eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccccccee
Confidence            699999999654 555665 699999999753 34555555543333333

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=6.1e-13  Score=120.74  Aligned_cols=208  Identities=14%  Similarity=0.140  Sum_probs=127.2

Q ss_pred             cceeEEEEeecCCCcEEEEEeCC---CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALYLLSTND---KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..+.+.+|+|+  |+.|+..+.+   ..|.+||+.+++..........         ..       ...|+|||+.+   
T Consensus       196 ~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~---------~~-------~~~~SPDG~~l---  254 (427)
T PRK02889        196 EPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGS---------NS-------APAWSPDGRTL---  254 (427)
T ss_pred             CCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCC---------cc-------ceEECCCCCEE---
Confidence            56889999765  8888877632   4699999998876554333211         11       57899999876   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCce
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~  267 (408)
                              +++.+.++...+|. +.....     ..+.+ ..+........|+|||+.|+..  .++...+|.+......
T Consensus       255 --------a~~~~~~g~~~Iy~-~d~~~~-----~~~~l-t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        255 --------AVALSRDGNSQIYT-VNADGS-----GLRRL-TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             --------EEEEccCCCceEEE-EECCCC-----CcEEC-CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence                    24556677777766 322111     11222 3344445678899999988754  4566677765422222


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      ...+     ...  .......+|+|+| ++++..+.++   .|.+||+.++...     .+...             ...
T Consensus       320 ~~~l-----t~~--g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~-----~lt~~-------------~~~  373 (427)
T PRK02889        320 AQRV-----TFT--GSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQVT-----ALTDT-------------TRD  373 (427)
T ss_pred             eEEE-----ecC--CCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCeE-----EccCC-------------CCc
Confidence            2211     112  2233467999999 7887766554   6999999887542     22211             123


Q ss_pred             EEEEEccCCCEEEEeC-C-Ce--EEEEECCCCCCceeeeeeccc
Q 015363          345 SDIKFARNGRHILSRD-Y-MT--LKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       345 ~~~~~spdg~~l~s~~-d-~~--v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      ....|+|||++|+.+. + +.  +.+.++  .+...+.+..+.+
T Consensus       374 ~~p~~spdg~~l~~~~~~~g~~~l~~~~~--~g~~~~~l~~~~g  415 (427)
T PRK02889        374 ESPSFAPNGRYILYATQQGGRSVLAAVSS--DGRIKQRLSVQGG  415 (427)
T ss_pred             cCceECCCCCEEEEEEecCCCEEEEEEEC--CCCceEEeecCCC
Confidence            5679999999988763 3 43  444455  4566666655544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.58  E-value=1.1e-14  Score=123.08  Aligned_cols=262  Identities=11%  Similarity=0.143  Sum_probs=178.2

Q ss_pred             CCCcccccCcccceeeecc-cCcCcc-------cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccc
Q 015363            5 GGSSEAAAQPLEWKFSQVF-GERTAG-------EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRD   76 (408)
Q Consensus         5 ~~~~~~~~~~~~w~~~~~~-~~~~~~-------~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~   76 (408)
                      .|.=++...+.-|++.|.- .+....       ...-..-.-..+.++.+|++|+.|+.-|.|-.+|+.++...      
T Consensus        91 ~G~le~e~~EkT~~v~Q~~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~------  164 (545)
T KOG1272|consen   91 AGYLEAEGLEKTYKVRQDDIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH------  164 (545)
T ss_pred             CCcccccCCcceeeeEHhhhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceee------
Confidence            3444555566777777631 110000       00011223467889999999999999999999999887631      


Q ss_pred             cccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCC
Q 015363           77 LEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNV  156 (408)
Q Consensus        77 ~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  156 (408)
                                       ..+.-             ...|.++.|.-+  .++| +......+.|||-...++.++.....
T Consensus       165 -----------------~Ei~v-------------~Etv~Dv~~LHn--eq~~-AVAQK~y~yvYD~~GtElHClk~~~~  211 (545)
T KOG1272|consen  165 -----------------FEINV-------------METVRDVTFLHN--EQFF-AVAQKKYVYVYDNNGTELHCLKRHIR  211 (545)
T ss_pred             -----------------eeeeh-------------hhhhhhhhhhcc--hHHH-HhhhhceEEEecCCCcEEeehhhcCc
Confidence                             22222             256999999743  4344 55667789999977665444333221


Q ss_pred             CCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccce
Q 015363          157 HPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI  236 (408)
Q Consensus       157 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  236 (408)
                                +.       .+.|.|..-.|            ++++..|.++.-| +...+      .+..+ ....+.+
T Consensus       212 ----------v~-------rLeFLPyHfLL------------~~~~~~G~L~Y~D-VS~Gk------lVa~~-~t~~G~~  254 (545)
T KOG1272|consen  212 ----------VA-------RLEFLPYHFLL------------VAASEAGFLKYQD-VSTGK------LVASI-RTGAGRT  254 (545)
T ss_pred             ----------hh-------hhcccchhhee------------eecccCCceEEEe-echhh------hhHHH-HccCCcc
Confidence                      11       56777777666            8899999999888 54322      22222 3344677


Q ss_pred             EEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          237 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       237 ~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                      ..++-+|-+..+-+| ..|+|.+|.-.......+        +-.|.++|.++++.++| +++|+.+.|..++|||+++.
T Consensus       255 ~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK--------iLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~  325 (545)
T KOG1272|consen  255 DVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK--------ILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNF  325 (545)
T ss_pred             chhhcCCccceEEEcCCCceEEecCCCCcchHHH--------HHhcCCCcceEEECCCC-cEEeecccccceeEeeeccc
Confidence            788889988888899 999999999985555544        56799999999999999 99999999999999999987


Q ss_pred             ceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEEC
Q 015363          316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI  369 (408)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~  369 (408)
                      ..+    .++...             -....++||..| +||.+-...|.+|.=
T Consensus       326 ~ql----~t~~tp-------------~~a~~ls~Sqkg-lLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  326 YQL----HTYRTP-------------HPASNLSLSQKG-LLALSYGDHVQIWKD  361 (545)
T ss_pred             ccc----ceeecC-------------CCcccccccccc-ceeeecCCeeeeehh
Confidence            532    222221             246778888654 455553348999953

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.5e-12  Score=118.08  Aligned_cols=205  Identities=12%  Similarity=0.114  Sum_probs=127.1

Q ss_pred             cceeEEEEeecCCCcEEEEEe---CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALYLLST---NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..+.+.+|+|+  |+.|+..+   .+..|.+|++.+++...+.......         .       ...|+|||+.+   
T Consensus       199 ~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~---------~-------~~~~SPDG~~L---  257 (429)
T PRK03629        199 QPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHN---------G-------APAFSPDGSKL---  257 (429)
T ss_pred             CceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCc---------C-------CeEECCCCCEE---
Confidence            56889999765  88888764   3457999999988765544332211         1       47899999987   


Q ss_pred             cccccCccccCCCCC--ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEE--eCCC
Q 015363          190 FGCASNDSSFPPGGV--SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLW--NLEI  263 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iw--d~~~  263 (408)
                              +++...+  ..|.+|| +....      . +.+ ..+...+....|+|||+.|+..  .++...+|  |+..
T Consensus       258 --------a~~~~~~g~~~I~~~d-~~tg~------~-~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~  320 (429)
T PRK03629        258 --------AFALSKTGSLNLYVMD-LASGQ------I-RQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING  320 (429)
T ss_pred             --------EEEEcCCCCcEEEEEE-CCCCC------E-EEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence                    2332333  3577777 43211      1 111 2333456788999999988765  34444555  5552


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                       +....        +...........|+|+| +.++..+.+   ..|.+||+.++..     ..+...            
T Consensus       321 -g~~~~--------lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~-----~~Lt~~------------  373 (429)
T PRK03629        321 -GAPQR--------ITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----QVLTDT------------  373 (429)
T ss_pred             -CCeEE--------eecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCe-----EEeCCC------------
Confidence             22222        12223345678999999 777665543   3688899987753     222211            


Q ss_pred             cceeEEEEEccCCCEEEEeC-C---CeEEEEECCCCCCceeeeeecccc
Q 015363          341 IASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       341 ~~~i~~~~~spdg~~l~s~~-d---~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                       .......|+|||++|+.++ +   ..+.+++++  |...+.+.+|.+.
T Consensus       374 -~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~--G~~~~~l~~~~~~  419 (429)
T PRK03629        374 -FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDGQ  419 (429)
T ss_pred             -CCCCCceECCCCCEEEEEEcCCCceEEEEEECC--CCCeEECccCCCC
Confidence             1124578999999998763 4   246777874  5777777776654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=7.6e-13  Score=115.04  Aligned_cols=265  Identities=16%  Similarity=0.219  Sum_probs=166.4

Q ss_pred             ceeeccceEEEEECCCCCe-EEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDH-LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~-l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .+.|...-+.|..+|||+| +|||.+--.|++||+.....                         .|..|...       
T Consensus        47 dfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------------------------KFERhlDa-------   94 (703)
T KOG2321|consen   47 DFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------------------------KFERHLDA-------   94 (703)
T ss_pred             hcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-------------------------eeeecccc-------
Confidence            4568888899999999996 57888999999999886543                         34444421       


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|.-.-.  +.|-+..+.-..|++|.+...-.......+.-...                  .++++.-.--|   
T Consensus        95 ---e~V~feiL--sDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GR------------------Dm~y~~~scDl---  148 (703)
T KOG2321|consen   95 ---EVVDFEIL--SDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGR------------------DMKYHKPSCDL---  148 (703)
T ss_pred             ---cceeEEEe--ccchhhheEeecCceeeehhhcCeeeeeecCcCCc------------------cccccCCCccE---
Confidence               22333333  22334455556777777654332221111111000                  12222111111   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                               +.++....|.-++ +..      +..+..+ ....+.++++..++-..+|++| .+|.|.+||.+. +...
T Consensus       149 ---------y~~gsg~evYRlN-LEq------GrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv  210 (703)
T KOG2321|consen  149 ---------YLVGSGSEVYRLN-LEQ------GRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRV  210 (703)
T ss_pred             ---------EEeecCcceEEEE-ccc------ccccccc-ccccccceeeeecCccceEEecccCceEEEecchh-hhhh
Confidence                     3333344444333 211      2222332 4445789999999999999999 899999999994 4333


Q ss_pred             eEeecCCCcccCCcC-----CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          269 NIVDVKPANMEDLTE-----VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                      ..++... ....|.+     .|+++.|+.+| -.+++|+.+|.+.|||+++.+.+     ....|..          ..+
T Consensus       211 ~~l~~~~-~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl-----~~kdh~~----------e~p  273 (703)
T KOG2321|consen  211 GTLDAAS-SVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPL-----LVKDHGY----------ELP  273 (703)
T ss_pred             eeeeccc-ccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCce-----eecccCC----------ccc
Confidence            3333211 1233333     49999999999 99999999999999999998653     2233321          257


Q ss_pred             eEEEEEccC--CCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEE
Q 015363          344 ISDIKFARN--GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVM  390 (408)
Q Consensus       344 i~~~~~spd--g~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  390 (408)
                      |..+.|-+.  ...|++.+...++|||-.+ |++...+..-.. .+.+|
T Consensus       274 i~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~-lND~C  320 (703)
T KOG2321|consen  274 IKKLDWQDTDQQNKVVSMDKRILKIWDECT-GKPMASIEPTSD-LNDFC  320 (703)
T ss_pred             eeeecccccCCCceEEecchHHhhhccccc-CCceeeccccCC-cCcee
Confidence            999999775  5678888779999999998 788887776555 33344

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=2.8e-12  Score=99.84  Aligned_cols=214  Identities=17%  Similarity=0.268  Sum_probs=135.6

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .+.+|.++|+.++|.  ..+|++|+ ||.|+=|..........+++..+             ....++....        
T Consensus        57 ~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe-------------~~~P~~~~~~--------  112 (325)
T KOG0649|consen   57 PEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWE-------------VKIPMQVDAV--------  112 (325)
T ss_pred             eccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhh-------------hcCccccCcc--------
Confidence            346799999999998  45677776 49999999876543212222111             1111111000        


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      + -..|+++-.-|..+  -++.++.|+.++-||+++++..+.                                      
T Consensus       113 e-vPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~--------------------------------------  151 (325)
T KOG0649|consen  113 E-VPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQRE--------------------------------------  151 (325)
T ss_pred             c-CCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEE--------------------------------------
Confidence            0 03388888877654  455666899999999999986654                                      


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                                                             +.+|.+.|.++.-......+++| .||++++||+++ .+..
T Consensus       152 ---------------------------------------~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v  191 (325)
T KOG0649|consen  152 ---------------------------------------YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHV  191 (325)
T ss_pred             ---------------------------------------EcCCcceeeeeeecccCcceeecCCCccEEEEeccc-ccee
Confidence                                                   25666778888774445566677 999999999995 4444


Q ss_pred             eEeec-C-CCcccCC-cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          269 NIVDV-K-PANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       269 ~~~~~-~-~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      +++.. + +..+..| ..+|.+++.+.   .+|++|+ ...+.+|.+++....    .++.-.             ..+.
T Consensus       192 ~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~t----~vfpip-------------a~v~  250 (325)
T KOG0649|consen  192 SMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSEST----CVFPIP-------------ARVH  250 (325)
T ss_pred             EEeccccChhhcCcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCce----EEEecc-------------ccee
Confidence            44332 1 1112222 34577777654   4677664 567999999987543    444433             4588


Q ss_pred             EEEEccCCCEEEEeCCCeEEEEECC
Q 015363          346 DIKFARNGRHILSRDYMTLKLWDIN  370 (408)
Q Consensus       346 ~~~~spdg~~l~s~~d~~v~~wd~~  370 (408)
                      .+.|..| ..|+.|..+.|.-|.+.
T Consensus       251 ~v~F~~d-~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  251 LVDFVDD-CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             Eeeeecc-eEEEeccccceeeeeec
Confidence            8888643 34444445789999885

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=7.8e-13  Score=108.65  Aligned_cols=214  Identities=13%  Similarity=0.205  Sum_probs=140.2

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      +..+.-++|++.-.-+|++..|-.|++|+-+....                        ..++...           +..
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p------------------------t~Lks~s-----------Qrn  142 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP------------------------TKLKSVS-----------QRN  142 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC------------------------ceecchh-----------hcc
Confidence            34577899999766789999999999999665321                        1222221           155


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      |+|++|-|... +.|+.|+.. -|.+|..........               .                           
T Consensus       143 vtclawRPlsa-selavgCr~-gIciW~~s~tln~~r---------------~---------------------------  178 (445)
T KOG2139|consen  143 VTCLAWRPLSA-SELAVGCRA-GICIWSDSRTLNANR---------------N---------------------------  178 (445)
T ss_pred             eeEEEeccCCc-ceeeeeecc-eeEEEEcCccccccc---------------c---------------------------
Confidence            99999987644 466666655 488998763321100               0                           


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEee
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~  272 (408)
                          ..+...+...+..                 ..+| ..|+++.|++||..++++  .|..|.|||..++. ...+. 
T Consensus       179 ----~~~~s~~~~qvl~-----------------~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~pL~-  234 (445)
T KOG2139|consen  179 ----IRMMSTHHLQVLQ-----------------DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ-KIPLI-  234 (445)
T ss_pred             ----cccccccchhhee-----------------CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC-ccccc-
Confidence                0000111111100                 2455 679999999999999997  79999999999543 33221 


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  352 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd  352 (408)
                            .-..+.++-+.|+||+ .+|.+++-|+..++|+........   +-..+             ++.|...+|+|+
T Consensus       235 ------~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~e---rw~lg-------------sgrvqtacWspc  291 (445)
T KOG2139|consen  235 ------PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKE---RWILG-------------SGRVQTACWSPC  291 (445)
T ss_pred             ------ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceec---ceecc-------------CCceeeeeecCC
Confidence                  1234567889999999 888888999999999654432221   11111             257999999999


Q ss_pred             CCEEEEeCCCeEEEEECCCCCC
Q 015363          353 GRHILSRDYMTLKLWDINMDSG  374 (408)
Q Consensus       353 g~~l~s~~d~~v~~wd~~~~~~  374 (408)
                      |++|+-+..+.-++|.+...++
T Consensus       292 GsfLLf~~sgsp~lysl~f~~~  313 (445)
T KOG2139|consen  292 GSFLLFACSGSPRLYSLTFDGE  313 (445)
T ss_pred             CCEEEEEEcCCceEEEEeecCC
Confidence            9998877655666676655433

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.5e-13  Score=115.03  Aligned_cols=200  Identities=12%  Similarity=0.113  Sum_probs=134.2

Q ss_pred             eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (408)
                      .+++|+  .+|..+++++.||++|+|+..+.........+        .+.|.       .+.|+|||+.+         
T Consensus       148 k~vaf~--~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~--------~~eV~-------DL~FS~dgk~l---------  201 (398)
T KOG0771|consen  148 KVVAFN--GDGSKLATGGTDGTLRVWEWPSMLTILEEIAH--------HAEVK-------DLDFSPDGKFL---------  201 (398)
T ss_pred             eEEEEc--CCCCEeeeccccceEEEEecCcchhhhhhHhh--------cCccc-------cceeCCCCcEE---------
Confidence            678885  55899999999999999996654333222222        22343       79999999998         


Q ss_pred             ccccCCCCCceeeeceeeeccccccccccceeec-cccccceEEEEeCCCC---CEE-EE-e-cCCeEEEEeCCCCCcee
Q 015363          196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDG---ETF-IS-A-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~---~~l-~~-~-~d~~i~iwd~~~~~~~~  268 (408)
                         ++-+.+ ..++|+ +....      +..... ...+..+..+.|+.++   .++ ++ . .-+.|+.||+...... 
T Consensus       202 ---asig~d-~~~VW~-~~~g~------~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-  269 (398)
T KOG0771|consen  202 ---ASIGAD-SARVWS-VNTGA------ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-  269 (398)
T ss_pred             ---EEecCC-ceEEEE-eccCc------hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-
Confidence               888888 999999 44321      111111 1222345566777665   322 22 2 5677788777643332 


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      .....  .........|++++.+++| +++|.|+.||.|.|++..+.+...   ..-            ..|...|+.+.
T Consensus       270 ~~l~~--~~~~~~~~siSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~~---~vk------------~aH~~~VT~lt  331 (398)
T KOG0771|consen  270 NFLRL--RKKIKRFKSISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQRLQ---YVK------------EAHLGFVTGLT  331 (398)
T ss_pred             cccch--hhhhhccCcceeEEEcCCC-cEEEEeccCCcEEEEEeceeeeeE---eeh------------hhheeeeeeEE
Confidence            11111  1122234568999999999 999999999999999998775431   222            33568999999


Q ss_pred             EccCCCEEEEe-CCCeEEEEECCC
Q 015363          349 FARNGRHILSR-DYMTLKLWDINM  371 (408)
Q Consensus       349 ~spdg~~l~s~-~d~~v~~wd~~~  371 (408)
                      |+||.+++++- ++.+..+..+.-
T Consensus       332 F~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  332 FSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EcCCcCcccccccCCceeEEEEee
Confidence            99999999986 467888877764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.54  E-value=5.6e-13  Score=125.50  Aligned_cols=239  Identities=16%  Similarity=0.220  Sum_probs=151.7

Q ss_pred             CCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-EEeccCCCCcccCCC
Q 015363           86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGN  164 (408)
Q Consensus        86 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~  164 (408)
                      ++|.+..++.+..|.            ..|..++.++ +.+.+|++|+.||+|++|+++.-... .+...          
T Consensus      1034 W~p~G~lVAhL~Ehs------------~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS---------- 1090 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHS------------SAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARS---------- 1090 (1431)
T ss_pred             CCccceEeehhhhcc------------ccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeee----------
Confidence            356666777777777            7788888874 44579999999999999998743211 11000          


Q ss_pred             CCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccc-cccccceee-ccccccceEEEEeC
Q 015363          165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-LVAGCRRIY-AHAHDYHINSISNN  242 (408)
Q Consensus       165 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~v~~i~~~  242 (408)
                                 .+.+++.+.....+....+.+.++.++.||.|++.+ +...+.. ....+.+.. ......-|..-++.
T Consensus      1091 -----------~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~-id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~ 1158 (1431)
T KOG1240|consen 1091 -----------ELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR-IDHYNVSKRVATQVRIPNLKKDGVVVSMHAFT 1158 (1431)
T ss_pred             -----------eEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE-ccccccccceeeeeecccccCCCceEEeeccc
Confidence                       344555555554555555555558889999999987 5442111 111122211 11222223333443


Q ss_pred             CC-CC-EEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceec
Q 015363          243 SD-GE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD  319 (408)
Q Consensus       243 ~~-~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  319 (408)
                      .. +. .++.+ ..+.|..||++........      ......+.|++++.+|.+ ++++.|+..|.+.+||+|-+..+ 
T Consensus      1159 ~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i- 1230 (1431)
T KOG1240|consen 1159 AIVQSHVLVYATDLSRIVSWDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPI- 1230 (1431)
T ss_pred             ccccceeEEEEEeccceEEecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCcee-
Confidence            32 33 56666 8899999999954443322      133446779999999999 89999999999999999977543 


Q ss_pred             ccccccccccCCCCccccccccceeEEEEEcc---CCCEEEEe-C-C-CeEEEEECCCCCCceeeeeec
Q 015363          320 THSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSR-D-Y-MTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp---dg~~l~s~-~-d-~~v~~wd~~~~~~~~~~~~~~  382 (408)
                         ..+..+.           ..+|..+..+|   .....+++ + . +.|.+|++.+ |.+-.++-..
T Consensus      1231 ---~sw~~P~-----------~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1231 ---LSWEHPA-----------RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWAS 1284 (1431)
T ss_pred             ---ecccCcc-----------cCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcC
Confidence               3333221           25677777766   33455554 3 3 8999999998 5665555443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.54  E-value=5.6e-11  Score=98.18  Aligned_cols=160  Identities=13%  Similarity=0.190  Sum_probs=110.4

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..|.+|++.    .++|+++-.+. |.|||+++-+.+..+.......    . .+.       ++..++.+.++      
T Consensus        88 t~IL~VrmN----r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~----~-gl~-------AlS~n~~n~yl------  144 (391)
T KOG2110|consen   88 TSILAVRMN----RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNP----K-GLC-------ALSPNNANCYL------  144 (391)
T ss_pred             CceEEEEEc----cceEEEEEccc-EEEEecccceeehhhhccCCCc----c-ceE-------eeccCCCCceE------
Confidence            459999984    34777776655 9999999988776655432110    0 111       23333333344      


Q ss_pred             ccCccccC-CCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCe-EEEEeCCCCCceee
Q 015363          193 ASNDSSFP-PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR-INLWNLEISNQSFN  269 (408)
Q Consensus       193 ~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~-i~iwd~~~~~~~~~  269 (408)
                           .+- ....|.|.+|| +.+      -++... +.+|.+.+.+++|+++|.+||++ +.|+ ||||.+..+.+..+
T Consensus       145 -----Ayp~s~t~GdV~l~d-~~n------l~~v~~-I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e  211 (391)
T KOG2110|consen  145 -----AYPGSTTSGDVVLFD-TIN------LQPVNT-INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE  211 (391)
T ss_pred             -----EecCCCCCceEEEEE-ccc------ceeeeE-EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence                 122 33468999999 433      222333 37999999999999999999999 6665 69999986665555


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                      .-   .   ......|.+++|+|++ ++|++.+..++|.++.+...
T Consensus       212 FR---R---G~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  212 FR---R---GTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             ee---C---CceeeEEEEEEECCCC-CeEEEecCCCeEEEEEeccc
Confidence            31   1   1124568899999999 99999999999999988754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.5e-12  Score=118.56  Aligned_cols=203  Identities=12%  Similarity=0.053  Sum_probs=123.5

Q ss_pred             cceeEEEEeecCCCcEEEEEeC---CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALYLLSTN---DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..+.+.+|+|+  |+.|+..+.   +..|.+||+.+++...+......         .       ....|+|+|+.+   
T Consensus       204 ~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~---------~-------~~~~~SpDG~~l---  262 (433)
T PRK04922        204 EPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI---------N-------GAPSFSPDGRRL---  262 (433)
T ss_pred             CccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC---------c-------cCceECCCCCEE---
Confidence            56889999765  878888763   34799999998876554332211         1       146899999876   


Q ss_pred             cccccCccccCCCCC--ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCe--EEEEeCCC
Q 015363          190 FGCASNDSSFPPGGV--SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR--INLWNLEI  263 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~--i~iwd~~~  263 (408)
                              +++.+.+  ..|.+|+ +.....       +. +..+.......+|+|||+.|+..  .++.  |.++|+..
T Consensus       263 --------~~~~s~~g~~~Iy~~d-~~~g~~-------~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~  325 (433)
T PRK04922        263 --------ALTLSRDGNPEIYVMD-LGSRQL-------TR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG  325 (433)
T ss_pred             --------EEEEeCCCCceEEEEE-CCCCCe-------EE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence                    2333333  4677777 432211       11 13333445678999999988865  3444  66666653


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                       +....+        ..+......++|+|+| +.++..+.++   .|.+||+.++...     .+...            
T Consensus       326 -g~~~~l--------t~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~-----~Lt~~------------  378 (433)
T PRK04922        326 -GSAERL--------TFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVR-----TLTPG------------  378 (433)
T ss_pred             -CCeEEe--------ecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCeE-----ECCCC------------
Confidence             222221        1122334568999999 7777655432   6999999877532     22211            


Q ss_pred             cceeEEEEEccCCCEEEEeC-C---CeEEEEECCCCCCceeeeeecc
Q 015363          341 IASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       341 ~~~i~~~~~spdg~~l~s~~-d---~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                       .......|+|||++|+..+ +   ..|.+++++  +...+.+..+.
T Consensus       379 -~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~--g~~~~~l~~~~  422 (433)
T PRK04922        379 -SLDESPSFAPNGSMVLYATREGGRGVLAAVSTD--GRVRQRLVSAD  422 (433)
T ss_pred             -CCCCCceECCCCCEEEEEEecCCceEEEEEECC--CCceEEcccCC
Confidence             1234568999999887652 2   457777774  45556555443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=6.8e-12  Score=114.50  Aligned_cols=200  Identities=12%  Similarity=0.080  Sum_probs=123.1

Q ss_pred             cceeEEEEeecCCCcEEEEEeC---CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALYLLSTN---DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..+.+.+|+|+  |+.|+..+.   +..|.+||+.+++...+.....         .+.       ...|+|||+.+   
T Consensus       202 ~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g---------~~~-------~~~~SPDG~~l---  260 (435)
T PRK05137        202 SLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQRELVGNFPG---------MTF-------APRFSPDGRKV---  260 (435)
T ss_pred             CCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC---------ccc-------CcEECCCCCEE---
Confidence            66999999765  888888753   4689999999887655433221         111       56899999876   


Q ss_pred             cccccCccccCCCCCce--eeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC--CeEEEEeCCC
Q 015363          190 FGCASNDSSFPPGGVSS--LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD--LRINLWNLEI  263 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d--~~i~iwd~~~  263 (408)
                              +++.+.++.  |.+|| +....       .+. +..+........|+|||+.++..  .+  ..|+++|+. 
T Consensus       261 --------a~~~~~~g~~~Iy~~d-~~~~~-------~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-  322 (435)
T PRK05137        261 --------VMSLSQGGNTDIYTMD-LRSGT-------TTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-  322 (435)
T ss_pred             --------EEEEecCCCceEEEEE-CCCCc-------eEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC-
Confidence                    244444444  55555 32211       112 23344456678999999988765  33  367888877 


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      ++....+        ..+...+....|+|+| +.|+..+.+   ..|.+||+..+..     +.+...            
T Consensus       323 g~~~~~l--------t~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-----~~lt~~------------  376 (435)
T PRK05137        323 GSNPRRI--------SFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-----RILTSG------------  376 (435)
T ss_pred             CCCeEEe--------ecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCce-----EeccCC------------
Confidence            3333322        2223445678999999 777766543   3688888765432     222111            


Q ss_pred             cceeEEEEEccCCCEEEEe-CC-C-----eEEEEECCCCCCceeeee
Q 015363          341 IASISDIKFARNGRHILSR-DY-M-----TLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       341 ~~~i~~~~~spdg~~l~s~-~d-~-----~v~~wd~~~~~~~~~~~~  380 (408)
                       ..+..+.|+|||++|+.. .+ +     .+.++|++.  ...+.+.
T Consensus       377 -~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g--~~~~~l~  420 (435)
T PRK05137        377 -FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG--RNEREVP  420 (435)
T ss_pred             -CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC--CceEEcc
Confidence             135678999999988764 22 2     567777753  3334443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.51  E-value=2.2e-10  Score=101.10  Aligned_cols=281  Identities=11%  Similarity=0.139  Sum_probs=159.3

Q ss_pred             eeccceEEEEECCCCCeEEEeec----CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDR----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      .-....+-++++|++++|.+...    +|.|..|.+.....                   ..+.+.......        
T Consensus        34 ~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------------------~L~~~~~~~~~g--------   86 (345)
T PF10282_consen   34 AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------------------TLTLLNSVPSGG--------   86 (345)
T ss_dssp             EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-------------------EEEEEEEEEESS--------
T ss_pred             cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-------------------eeEEeeeeccCC--------
Confidence            34455678899999999988876    57999999876421                   111222222111        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCC-CcEEEEeccCCCC-cccCCCCCeEeecCCceeeEEccCCCe
Q 015363          109 LEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHP-EKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~-~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                          .....+++.  +++.+++++. .+|.|.++++.. +............ ....+   .......+..+.++|+|+.
T Consensus        87 ----~~p~~i~~~--~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~---~rq~~~h~H~v~~~pdg~~  157 (345)
T PF10282_consen   87 ----SSPCHIAVD--PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP---DRQEGPHPHQVVFSPDGRF  157 (345)
T ss_dssp             ----SCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST---TTTSSTCEEEEEE-TTSSE
T ss_pred             ----CCcEEEEEe--cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc---cccccccceeEEECCCCCE
Confidence                335667785  5588888876 699999999986 4443322110000 00000   0000112236889999998


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCC
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI  263 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~  263 (408)
                      +           +++.-....|.+|+ +.........  ...+........+.++|+|+++++.+.  .++.|.++++..
T Consensus       158 v-----------~v~dlG~D~v~~~~-~~~~~~~l~~--~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~  223 (345)
T PF10282_consen  158 V-----------YVPDLGADRVYVYD-IDDDTGKLTP--VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP  223 (345)
T ss_dssp             E-----------EEEETTTTEEEEEE-E-TTS-TEEE--EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             E-----------EEEecCCCEEEEEE-EeCCCceEEE--eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence            7           23334455788888 5443311111  111112344668899999999988765  689999999983


Q ss_pred             CCcee---eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC--CceecccccccccccCCCCccccc
Q 015363          264 SNQSF---NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFT  338 (408)
Q Consensus       264 ~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~  338 (408)
                      ....+   +.+...+....+ ......|+++|+|..++++....+.|.+|++..  +.+.  .+..+...          
T Consensus       224 ~~g~~~~~~~~~~~~~~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~--~~~~~~~~----------  290 (345)
T PF10282_consen  224 SDGSLTEIQTISTLPEGFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLT--LVQTVPTG----------  290 (345)
T ss_dssp             TTTEEEEEEEEESCETTSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE--EEEEEEES----------
T ss_pred             cCCceeEEEEeeeccccccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceE--EEEEEeCC----------
Confidence            22222   222222111221 225789999999933444445578999999943  3321  11222211          


Q ss_pred             cccceeEEEEEccCCCEEEEeC--CCeEEEEECCCCCCceee
Q 015363          339 EIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVAT  378 (408)
Q Consensus       339 ~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~~~~~~~~  378 (408)
                        ......++++|+|++|+++.  ++.|.+|+++...-.+..
T Consensus       291 --G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  291 --GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             --SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             --CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence              13478999999999999873  489999988643333333

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=3.9e-12  Score=115.42  Aligned_cols=219  Identities=11%  Similarity=0.123  Sum_probs=133.1

Q ss_pred             eeccceEEEEECCCCCeEEEeec---CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .+...+.+.+|||||+.||..+.   +..|.+|++.+++..                     .+..+.++          
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---------------------~l~~~~~~----------  244 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------------------QVASFPRH----------  244 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---------------------EccCCCCC----------
Confidence            45567999999999998887543   347889998776421                     12222222          


Q ss_pred             ccccceeEEEEeecCCCcEEEEE-eCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          110 EIEEKINKIRWCQSANSALYLLS-TNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~-~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                           +..++|+|+  |+.|+.. +.++  .|.+||+.+++..........         +       ....|+|+|+.+
T Consensus       245 -----~~~~~~SPD--G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~---------~-------~~~~wSPDG~~I  301 (429)
T PRK03629        245 -----NGAPAFSPD--GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN---------N-------TEPTWFPDSQNL  301 (429)
T ss_pred             -----cCCeEECCC--CCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCC---------c-------CceEECCCCCEE
Confidence                 456889755  8778765 4454  588999998876554332211         1       157899999977


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC--CeEEEEeCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD--LRINLWNLE  262 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d--~~i~iwd~~  262 (408)
                                 +++...++...+|. +.....    .. +.+ ..+........|+|||+.++..  .+  ..|.+||+.
T Consensus       302 -----------~f~s~~~g~~~Iy~-~d~~~g----~~-~~l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~  363 (429)
T PRK03629        302 -----------AYTSDQAGRPQVYK-VNINGG----AP-QRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  363 (429)
T ss_pred             -----------EEEeCCCCCceEEE-EECCCC----Ce-EEe-ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence                       23444445555554 221111    11 111 2222345578899999998765  33  468889987


Q ss_pred             CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe---EEEEEcCCCceecccccccccccCCCCcccccc
Q 015363          263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS---IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE  339 (408)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (408)
                      ++. ...+        .. ........|+||| +.|+.++.++.   +.++++.....     ..+.++           
T Consensus       364 ~g~-~~~L--------t~-~~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~~-----~~l~~~-----------  416 (429)
T PRK03629        364 TGG-VQVL--------TD-TFLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRFK-----ARLPAT-----------  416 (429)
T ss_pred             CCC-eEEe--------CC-CCCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCCe-----EECccC-----------
Confidence            443 3221        11 1122467899999 88888777653   67777754322     334444           


Q ss_pred             ccceeEEEEEcc
Q 015363          340 IIASISDIKFAR  351 (408)
Q Consensus       340 h~~~i~~~~~sp  351 (408)
                       .+.+...+|+|
T Consensus       417 -~~~~~~p~Wsp  427 (429)
T PRK03629        417 -DGQVKFPAWSP  427 (429)
T ss_pred             -CCCcCCcccCC
Confidence             35677888887

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.49  E-value=1.4e-13  Score=124.53  Aligned_cols=206  Identities=12%  Similarity=0.172  Sum_probs=138.5

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..|.|+.|  +..|.++++|+.|..++||.+++..+.....++...        +.       .++.+.+...       
T Consensus       191 naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d--------it-------dlavs~~n~~-------  246 (1113)
T KOG0644|consen  191 NAVYCAIF--DRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGD--------IT-------DLAVSSNNTM-------  246 (1113)
T ss_pred             hheeeeee--ccccceEeecCccceeeeeeccchhhhccCCCCccc--------cc-------hhccchhhhh-------
Confidence            88999999  555999999999999999999999888777776433        21       2333434433       


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEee
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~  272 (408)
                           +++++.|..|++|. +..      ..++.. +.+|.+.|++++|+|-.   .++.||++++||.+ .....  +.
T Consensus       247 -----iaaaS~D~vIrvWr-l~~------~~pvsv-LrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~~~~--y~  307 (1113)
T KOG0644|consen  247 -----IAAASNDKVIRVWR-LPD------GAPVSV-LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRI--YV  307 (1113)
T ss_pred             -----hhhcccCceEEEEe-cCC------CchHHH-HhccccceeeeccCccc---cCCCCCceEecccc-ccccc--cC
Confidence                 48999999999999 433      334444 48999999999999965   34499999999998 21111  11


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEE-------------------------------------EcCCC
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI-------------------------------------DMRQS  315 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw-------------------------------------d~~~~  315 (408)
                      -+|..+.+ ..-+.++.|...+ .-+++++.|+.-..|                                     ++-++
T Consensus       308 prp~~~~~-~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g  385 (1113)
T KOG0644|consen  308 PRPLKFTE-KDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG  385 (1113)
T ss_pred             CCCCCccc-ccceeeeeccccc-cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc
Confidence            11111222 2334455555555 555555555544444                                     33333


Q ss_pred             ceecccccccccccCCCCccccccccceeEEEEEccCCCEEE-Ee-CCCeEEEEECCCCCCceeeee
Q 015363          316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SR-DYMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~-s~-~d~~v~~wd~~~~~~~~~~~~  380 (408)
                      .+                .+...+|...+..+.++|-+..++ ++ -||...|||+.. |.+++.+.
T Consensus       386 ~l----------------~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e-g~pik~y~  435 (1113)
T KOG0644|consen  386 QL----------------LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE-GIPIKHYF  435 (1113)
T ss_pred             hh----------------hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeeccc-CCcceeee
Confidence            22                222456678899999999666555 44 479999999996 78877765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.49  E-value=7.9e-13  Score=114.03  Aligned_cols=76  Identities=13%  Similarity=0.276  Sum_probs=61.2

Q ss_pred             cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC-------------------
Q 015363          234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT-------------------  293 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-------------------  293 (408)
                      +...|++|+|||+++++| .|..|.||.+. .++.+.       .-.+|+.+|..++|+|-                   
T Consensus       333 GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~-erRVVA-------RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~  404 (636)
T KOG2394|consen  333 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFE-ERRVVA-------RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSD  404 (636)
T ss_pred             cceEEEEEcCCccEEEecCCcceEEEEEec-cceEEE-------eccccccceeeEeecccccccccccccccccccccc
Confidence            678899999999999999 99999999998 444433       25789999999999831                   


Q ss_pred             ------------C----------------CceEEEEeCCCeEEEEEcCCCce
Q 015363          294 ------------H----------------CNMLAYSSSKGSIRLIDMRQSAL  317 (408)
Q Consensus       294 ------------~----------------~~~l~s~~~dg~i~iwd~~~~~~  317 (408)
                                  +                ...|.+.+.|..+.+||+....+
T Consensus       405 ~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  405 VAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             hhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence                        0                13678889999999999976543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.48  E-value=1.1e-10  Score=102.98  Aligned_cols=259  Identities=10%  Similarity=0.121  Sum_probs=145.8

Q ss_pred             EEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEE
Q 015363           39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI  118 (408)
Q Consensus        39 ~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v  118 (408)
                      ..+.|+|||++++++++||.|.++|+.+.+.                       +..++..             ....++
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-----------------------v~~i~~G-------------~~~~~i   83 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV-----------------------VATIKVG-------------GNPRGI   83 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSE-----------------------EEEEE-S-------------SEEEEE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccE-----------------------EEEEecC-------------CCcceE
Confidence            3477999999999999999999999987763                       3333332             336789


Q ss_pred             EEeecCCCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCcc
Q 015363          119 RWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS  197 (408)
Q Consensus       119 ~~~p~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (408)
                      +++|+  |++++++. .++.+.++|.++.+.............. ....+.       .+..+|.....           
T Consensus        84 ~~s~D--G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~-~~~Rv~-------aIv~s~~~~~f-----------  142 (369)
T PF02239_consen   84 AVSPD--GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG-PESRVA-------AIVASPGRPEF-----------  142 (369)
T ss_dssp             EE--T--TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT-S---EE-------EEEE-SSSSEE-----------
T ss_pred             EEcCC--CCEEEEEecCCCceeEeccccccceeecccccccccc-cCCCce-------eEEecCCCCEE-----------
Confidence            99654  88888775 7899999999998887766543221100 111121       34445554422           


Q ss_pred             ccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecC-
Q 015363          198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVK-  274 (408)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~-  274 (408)
                      +++.-+.+.|.+-| ......     ..... ..-........|+|++++++.+  .+..|-++|..+.+. ...++.. 
T Consensus       143 Vv~lkd~~~I~vVd-y~d~~~-----~~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-v~~i~~g~  214 (369)
T PF02239_consen  143 VVNLKDTGEIWVVD-YSDPKN-----LKVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-VALIDTGK  214 (369)
T ss_dssp             EEEETTTTEEEEEE-TTTSSC-----EEEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-EEEEE-SS
T ss_pred             EEEEccCCeEEEEE-eccccc-----cceee-ecccccccccccCcccceeeecccccceeEEEeeccceE-EEEeeccc
Confidence            24444445565544 222110     00011 1222456678999999988775  677899999874332 2222110 


Q ss_pred             -C----------------------------------C------------cccCCcCCeEEEEEcCCCCceEEEE----eC
Q 015363          275 -P----------------------------------A------------NMEDLTEVITSAEFHPTHCNMLAYS----SS  303 (408)
Q Consensus       275 -~----------------------------------~------------~~~~~~~~v~~~~~~p~~~~~l~s~----~~  303 (408)
                       +                                  .            ++.....+ .-+..+|++ .++.+.    ..
T Consensus       215 ~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~  292 (369)
T PF02239_consen  215 KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPD  292 (369)
T ss_dssp             SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SS
T ss_pred             cccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCC
Confidence             0                                  0            00111122 446678999 666665    44


Q ss_pred             CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe--CC-CeEEEEECCCCCCceeeee
Q 015363          304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DY-MTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~d-~~v~~wd~~~~~~~~~~~~  380 (408)
                      .++|.++|.++.+.+    ..+....           ...+..+.|++||+++..+  .. +.|.+||..+ .+.++.++
T Consensus       293 ~~~v~viD~~tl~~~----~~i~~~~-----------~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T-l~~~~~i~  356 (369)
T PF02239_consen  293 ADTVQVIDKKTLKVV----KTITPGP-----------GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT-LKEKKRIP  356 (369)
T ss_dssp             HT-EEEEECCGTEEE----E-HHHHH-----------T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT-TEEEEEEE
T ss_pred             CceEEEEECcCccee----EEEeccC-----------CCcEeccEECCCCCEEEEEEecCCCEEEEEECCC-cEEEEEEE
Confidence            689999999988554    3333221           1248899999999987765  33 5999999998 68888776

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1.2e-11  Score=112.79  Aligned_cols=200  Identities=9%  Similarity=0.092  Sum_probs=123.0

Q ss_pred             eeeccceEEEEECCCCCeEEEeec---CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.                        ..+..+.        
T Consensus       198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~------------------------~~l~~~~--------  245 (435)
T PRK05137        198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR------------------------ELVGNFP--------  245 (435)
T ss_pred             ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE------------------------EEeecCC--------
Confidence            356778999999999999888764   46899999877642                        1223333        


Q ss_pred             cccccceeEEEEeecCCCcEEE-EEeCCCe--EEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          109 LEIEEKINKIRWCQSANSALYL-LSTNDKT--IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~-~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                          ..+...+|+|+  |+.|+ +.+.++.  |.+||+.+++.........         ...       ...|+|||+.
T Consensus       246 ----g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~---------~~~-------~~~~spDG~~  303 (435)
T PRK05137        246 ----GMTFAPRFSPD--GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPA---------IDT-------SPSYSPDGSQ  303 (435)
T ss_pred             ----CcccCcEECCC--CCEEEEEEecCCCceEEEEECCCCceEEccCCCC---------ccC-------ceeEcCCCCE
Confidence                44678899755  77765 4455554  7777888877654432211         111       4689999998


Q ss_pred             eecccccccCccccCCCCCc--eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c-C--CeEEEE
Q 015363          186 GERNFGCASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-D--LRINLW  259 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d--~~i~iw  259 (408)
                      +           +++...++  .|.+++ +....       .+.+ ..+...+....|+|+|+.++.. . .  ..|.+|
T Consensus       304 i-----------~f~s~~~g~~~Iy~~d-~~g~~-------~~~l-t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~  363 (435)
T PRK05137        304 I-----------VFESDRSGSPQLYVMN-ADGSN-------PRRI-SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM  363 (435)
T ss_pred             E-----------EEEECCCCCCeEEEEE-CCCCC-------eEEe-ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence            7           23333333  455555 32211       1111 2223445678899999998875 2 2  468888


Q ss_pred             eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC------CeEEEEEcCCCc
Q 015363          260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIRLIDMRQSA  316 (408)
Q Consensus       260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~  316 (408)
                      |+.. +.. ..       +.. ...+..+.|+|+| +.|+..+.+      ..+.++|+..+.
T Consensus       364 d~~~-~~~-~~-------lt~-~~~~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        364 KPDG-SGE-RI-------LTS-GFLVEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             ECCC-Cce-Ee-------ccC-CCCCCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCc
Confidence            8763 322 21       111 1235678999999 666655442      357788886653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.46  E-value=5e-13  Score=113.18  Aligned_cols=200  Identities=11%  Similarity=0.118  Sum_probs=149.8

Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      -..+.+  +.+|..++.+++.|.|..+|..++++...+.....         |.       .+.|..+.++         
T Consensus       132 PY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et---------v~-------Dv~~LHneq~---------  184 (545)
T KOG1272|consen  132 PYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET---------VR-------DVTFLHNEQF---------  184 (545)
T ss_pred             Ceeeee--cCCccEEEecCCccceeeeecccceeeeeeehhhh---------hh-------hhhhhcchHH---------
Confidence            456677  46699999999999999999999987766554322         11       3555555554         


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeec
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  273 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~  273 (408)
                          ++......+.+|| -   .+ ..-.|++..     ..|..+.|-|-.-+|+++ ..|.++.-|+.+++..-.    
T Consensus       185 ----~AVAQK~y~yvYD-~---~G-tElHClk~~-----~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~----  246 (545)
T KOG1272|consen  185 ----FAVAQKKYVYVYD-N---NG-TELHCLKRH-----IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS----  246 (545)
T ss_pred             ----HHhhhhceEEEec-C---CC-cEEeehhhc-----CchhhhcccchhheeeecccCCceEEEeechhhhhHH----
Confidence                5667778888888 2   11 112343333     678899999999888888 899999999996554432    


Q ss_pred             CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC
Q 015363          274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  353 (408)
Q Consensus       274 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg  353 (408)
                          +....+.+..|+-+|-+ -++-+|...|+|.+|...+...+    ..+..|            .++|.++++.++|
T Consensus       247 ----~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePL----vKiLcH------------~g~V~siAv~~~G  305 (545)
T KOG1272|consen  247 ----IRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPL----VKILCH------------RGPVSSIAVDRGG  305 (545)
T ss_pred             ----HHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchH----HHHHhc------------CCCcceEEECCCC
Confidence                34456778889999999 89999999999999998876443    455555            4889999999999


Q ss_pred             CEEEEeC-CCeEEEEECCCCCCceeeeee
Q 015363          354 RHILSRD-YMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       354 ~~l~s~~-d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      +|+||++ |..++|||+++. ..+.++..
T Consensus       306 ~YMaTtG~Dr~~kIWDlR~~-~ql~t~~t  333 (545)
T KOG1272|consen  306 RYMATTGLDRKVKIWDLRNF-YQLHTYRT  333 (545)
T ss_pred             cEEeecccccceeEeeeccc-cccceeec
Confidence            9999975 899999999984 44444443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.45  E-value=9.7e-13  Score=106.82  Aligned_cols=222  Identities=15%  Similarity=0.173  Sum_probs=138.6

Q ss_pred             EEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEE
Q 015363           40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (408)
Q Consensus        40 ~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~  119 (408)
                      -.+|||+|+++|++++- ++.|-|..+.+.                       .+.|.. -            ++|.-+.
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~-----------------------~qlf~c-l------------dki~yie   55 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL-----------------------HQLFLC-L------------DKIVYIE   55 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhH-----------------------HHHHHH-H------------HHhhhee
Confidence            45799999999999877 787888765542                       111111 1            5588899


Q ss_pred             EeecCCCcEEEE-EeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363          120 WCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (408)
Q Consensus       120 ~~p~~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (408)
                      |.  .+..+++. ...|+.|.+|++...+....+......        +.       .+.|+|+|+.+           +
T Consensus        56 W~--ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag--------ls-------~~~WSPdgrhi-----------L  107 (447)
T KOG4497|consen   56 WK--ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG--------LS-------SISWSPDGRHI-----------L  107 (447)
T ss_pred             ee--ccceeeeeeeeccceEEEEEeecceeEEEeccCCCc--------ce-------eeeECCCcceE-----------e
Confidence            96  33444444 468899999999988766554433211        22       58999999876           4


Q ss_pred             cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCC
Q 015363          199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA  276 (408)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~  276 (408)
                      .+...+-.|.+|. +........        .-....+..++|+|||++.+..  .|.. ..+++. ..+...+.    .
T Consensus       108 ~tseF~lriTVWS-L~t~~~~~~--------~~pK~~~kg~~f~~dg~f~ai~sRrDCk-dyv~i~-~c~~W~ll----~  172 (447)
T KOG4497|consen  108 LTSEFDLRITVWS-LNTQKGYLL--------PHPKTNVKGYAFHPDGQFCAILSRRDCK-DYVQIS-SCKAWILL----K  172 (447)
T ss_pred             eeecceeEEEEEE-eccceeEEe--------cccccCceeEEECCCCceeeeeecccHH-HHHHHH-hhHHHHHH----H
Confidence            6778889999999 544322111        2223456889999999998876  3321 111111 01110000    0


Q ss_pred             cccCCcCCeEEEEEcCCCCceEEEEeC--CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363          277 NMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       277 ~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                      .+.-..-..+.+.|+||| ..||+=.+  +-.|..|...                            -.+..+.|+|.++
T Consensus       173 ~f~~dT~DltgieWsPdg-~~laVwd~~Leykv~aYe~~----------------------------lG~k~v~wsP~~q  223 (447)
T KOG4497|consen  173 EFKLDTIDLTGIEWSPDG-NWLAVWDNVLEYKVYAYERG----------------------------LGLKFVEWSPCNQ  223 (447)
T ss_pred             hcCCCcccccCceECCCC-cEEEEecchhhheeeeeeec----------------------------cceeEEEeccccc
Confidence            122233446789999999 77765322  1222222211                            3578899999999


Q ss_pred             EEEEeC-CCeEEEEECC
Q 015363          355 HILSRD-YMTLKLWDIN  370 (408)
Q Consensus       355 ~l~s~~-d~~v~~wd~~  370 (408)
                      +|+.|+ |+.+++-+--
T Consensus       224 flavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  224 FLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             eEEeeccchhhhhhcee
Confidence            999996 7888875543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.2e-11  Score=112.66  Aligned_cols=201  Identities=12%  Similarity=0.151  Sum_probs=120.8

Q ss_pred             eeeccceEEEEECCCCCeEEEeecC---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ..+...+.+.+|+|||+.|+..+.+   ..|.+|++.+++..                        .+....        
T Consensus       200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~------------------------~l~~~~--------  247 (433)
T PRK04922        200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE------------------------LVASFR--------  247 (433)
T ss_pred             ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE------------------------EeccCC--------
Confidence            3466789999999999999987743   46999998776421                        122222        


Q ss_pred             cccccceeEEEEeecCCCcEEEE-EeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          109 LEIEEKINKIRWCQSANSALYLL-STNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                          ....+++|+|+  |+.++. .+.++  .|.+||+.+++.........         ..       ....|+|||+.
T Consensus       248 ----g~~~~~~~SpD--G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~---------~~-------~~~~~spDG~~  305 (433)
T PRK04922        248 ----GINGAPSFSPD--GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG---------ID-------TEPTWAPDGKS  305 (433)
T ss_pred             ----CCccCceECCC--CCEEEEEEeCCCCceEEEEECCCCCeEECccCCC---------Cc-------cceEECCCCCE
Confidence                22457899755  776654 45555  69999999887654332211         01       14689999997


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c-C--CeEEEEeC
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-D--LRINLWNL  261 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d--~~i~iwd~  261 (408)
                      +           +++...++...+|. +....    ....+.  ..+......++|+|+|+.++.. . +  ..|.+||+
T Consensus       306 l-----------~f~sd~~g~~~iy~-~dl~~----g~~~~l--t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~  367 (433)
T PRK04922        306 I-----------YFTSDRGGRPQIYR-VAASG----GSAERL--TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDL  367 (433)
T ss_pred             E-----------EEEECCCCCceEEE-EECCC----CCeEEe--ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence            7           23333444444443 21111    111111  1122234468999999998865 3 3  36999999


Q ss_pred             CCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCC
Q 015363          262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQS  315 (408)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~  315 (408)
                      .++ ....        +. +........|+|+| +.++..+.+   +.|.++++..+
T Consensus       368 ~~g-~~~~--------Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        368 STG-SVRT--------LT-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             CCC-CeEE--------CC-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCC
Confidence            743 3322        22 12233467999999 766665543   46778888544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.44  E-value=2.7e-11  Score=98.21  Aligned_cols=173  Identities=10%  Similarity=0.229  Sum_probs=124.4

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEe-CCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFER-TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ....|...|++|+|+|..+.|++|+.|..-.+|.. +++.                     ++....+..++        
T Consensus        50 tls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~---------------------WkptlvLlRiN--------  100 (361)
T KOG1523|consen   50 TLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT---------------------WKPTLVLLRIN--------  100 (361)
T ss_pred             ehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe---------------------eccceeEEEec--------
Confidence            34568999999999999999999999999999997 4443                     22233344455        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          ..+++|.|+|.  .+.||+|+.-+.|.||-++...--.+.+.                                  
T Consensus       101 ----rAAt~V~WsP~--enkFAVgSgar~isVcy~E~ENdWWVsKh----------------------------------  140 (361)
T KOG1523|consen  101 ----RAATCVKWSPK--ENKFAVGSGARLISVCYYEQENDWWVSKH----------------------------------  140 (361)
T ss_pred             ----cceeeEeecCc--CceEEeccCccEEEEEEEecccceehhhh----------------------------------
Confidence                67999999876  55999999999999987764431111000                                  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                                      .       ...+...|++++|+|++-+|++| .|+..++|..--.+  
T Consensus       141 --------------------------------i-------kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~--  179 (361)
T KOG1523|consen  141 --------------------------------I-------KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKG--  179 (361)
T ss_pred             --------------------------------h-------CCccccceeeeeccCCcceecccccCcceeEEEEeeec--
Confidence                                            0       12334668889999998888888 78888888653110  


Q ss_pred             eeEeecCC---------------CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363          268 FNIVDVKP---------------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA  316 (408)
Q Consensus       268 ~~~~~~~~---------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  316 (408)
                         ++-+|               .++....+++..+.|+|+| ..|+-.+.|..+.+-|.....
T Consensus       180 ---Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  180 ---VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ---cccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCc
Confidence               00000               1122346789999999999 999999999999999987654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=2.1e-11  Score=101.38  Aligned_cols=204  Identities=14%  Similarity=0.171  Sum_probs=138.4

Q ss_pred             CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCc
Q 015363           48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA  127 (408)
Q Consensus        48 ~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~  127 (408)
                      ..|++|-.+|.+.+|..+.+...                   ...+..+..+             ..+..+.-+|... .
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~h-------------------ss~l~~la~g-------------~g~~~~r~~~~~p-~  162 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLH-------------------SSKLIKLATG-------------PGLYDVRQTDTDP-Y  162 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccc-------------------cccceeeecC-------------CceeeeccCCCCC-c
Confidence            35888889999999998865421                   0111223333             3355666654433 3


Q ss_pred             EEEEEeCC--CeEEEEEcCCCcEEEEeccCCCCc-ccCCCCCeEeecCCceeeEEccC--CCeeecccccccCccccCCC
Q 015363          128 LYLLSTND--KTIKLWKVQEKKVKKVFDWNVHPE-KAAGNGPIFGSHVSAIPKSYMAN--GGCGERNFGCASNDSSFPPG  202 (408)
Q Consensus       128 ~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~  202 (408)
                      .+|+|+..  ..+++||++..  .+++.....+. ...-.-+++..     .+.|.+.  ...            +++++
T Consensus       163 Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~t-----di~Fl~g~~~~~------------fat~T  223 (412)
T KOG3881|consen  163 IVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWIT-----DIRFLEGSPNYK------------FATIT  223 (412)
T ss_pred             eEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeeec-----cceecCCCCCce------------EEEEe
Confidence            77779988  89999999988  44444433221 11011123322     3444444  333            48899


Q ss_pred             CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCC
Q 015363          203 GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL  281 (408)
Q Consensus       203 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  281 (408)
                      .-+.+++|| ...+     .+++..+ .--..+++++...|.++++++| .-+.+..||++.......       .+.+-
T Consensus       224 ~~hqvR~YD-t~~q-----RRPV~~f-d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~-------~~kg~  289 (412)
T KOG3881|consen  224 RYHQVRLYD-TRHQ-----RRPVAQF-DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC-------GLKGI  289 (412)
T ss_pred             cceeEEEec-Cccc-----CcceeEe-ccccCcceeeeecCCCcEEEEecccchhheecccCceeecc-------ccCCc
Confidence            999999999 4321     2333333 3445779999999999999999 899999999994443332       26777


Q ss_pred             cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       282 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      .+.++++..+|.+ .++|+++-|+.+||+|+.+.+++
T Consensus       290 tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  290 TGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             cCCcceEEEcCCC-ceEEeeccceeEEEeecccchhh
Confidence            8899999999999 99999999999999999996554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=3e-10  Score=99.01  Aligned_cols=163  Identities=13%  Similarity=0.208  Sum_probs=105.2

Q ss_pred             eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE--e-c
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS--A-D  252 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~--~-~  252 (408)
                      .+.|++-|.-|-.+........-.+-....++++.+ ..+.      .+...  ....++|.++.|+|+++-|++  | .
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~-t~g~------s~~V~--L~k~GPVhdv~W~~s~~EF~VvyGfM  292 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLA-TQGE------SVSVP--LLKEGPVHDVTWSPSGREFAVVYGFM  292 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEE-ecCc------eEEEe--cCCCCCceEEEECCCCCEEEEEEecc
Confidence            467777776654332222221112223345566655 2211      11111  233588999999999988876  4 6


Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC---CCeEEEEEcCCCceeccccccccccc
Q 015363          253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQE  329 (408)
Q Consensus       253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~  329 (408)
                      -..+.|||++ ....+.+          ..++=.++-|+|.| ++++.++-   .|.|-+||+.+.+.+    ..+... 
T Consensus       293 PAkvtifnlr-~~~v~df----------~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i----~~~~a~-  355 (566)
T KOG2315|consen  293 PAKVTIFNLR-GKPVFDF----------PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLI----AKFKAA-  355 (566)
T ss_pred             cceEEEEcCC-CCEeEeC----------CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhhc----cccccC-
Confidence            8899999999 5544432          24455789999999 77776654   489999999986544    333333 


Q ss_pred             CCCCccccccccceeEEEEEccCCCEEEEe--C-----CCeEEEEECCCCCCceeee
Q 015363          330 APGTRSFFTEIIASISDIKFARNGRHILSR--D-----YMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       330 ~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~-----d~~v~~wd~~~~~~~~~~~  379 (408)
                                   .-+-+.|+|||++++++  +     |+.++||+..  |..+...
T Consensus       356 -------------~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt--G~~l~~~  397 (566)
T KOG2315|consen  356 -------------NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT--GSLLHEK  397 (566)
T ss_pred             -------------CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec--Cceeehh
Confidence                         23557999999999986  3     5889999995  5655543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=2.6e-10  Score=103.12  Aligned_cols=207  Identities=13%  Similarity=0.110  Sum_probs=117.4

Q ss_pred             cceeEEEEeecCCCcE--EE-EEeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          113 EKINKIRWCQSANSAL--YL-LSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~--l~-~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                      ..+..-+|+|+  |+.  ++ +...++  .|.+.++.+++...+.......         .       ...|+|||+.|.
T Consensus       185 ~~~~sP~wSPD--G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~---------~-------~p~wSPDG~~La  246 (428)
T PRK01029        185 SLSITPTWMHI--GSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQ---------L-------MPTFSPRKKLLA  246 (428)
T ss_pred             CCcccceEccC--CCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCc---------c-------ceEECCCCCEEE
Confidence            34667899866  554  32 333443  5777788888766655443221         1       468999998872


Q ss_pred             cccccccCccccCCCC----CceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEE--
Q 015363          188 RNFGCASNDSSFPPGG----VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLW--  259 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iw--  259 (408)
                                 ++...    +..+..|+ +....   .+...+. ...........+|+|||+.|+..  .++...+|  
T Consensus       247 -----------f~s~~~g~~di~~~~~~-~~~g~---~g~~~~l-t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        247 -----------FISDRYGNPDLFIQSFS-LETGA---IGKPRRL-LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             -----------EEECCCCCcceeEEEee-cccCC---CCcceEe-ecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence                       32222    22233344 22110   1111121 12222334567999999987765  45655555  


Q ss_pred             eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCCceecccccccccccCCCCccc
Q 015363          260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF  336 (408)
Q Consensus       260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  336 (408)
                      ++...+.....       +..+...+....|+|+| +.|+..+.+   ..|.+||+.+++..     .+...        
T Consensus       311 ~~~~~g~~~~~-------lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~-----~Lt~~--------  369 (428)
T PRK01029        311 QIDPEGQSPRL-------LTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDY-----QLTTS--------  369 (428)
T ss_pred             ECcccccceEE-------eccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeE-----EccCC--------
Confidence            44322221221       23334456788999999 777665543   47999999887542     22211        


Q ss_pred             cccccceeEEEEEccCCCEEEE-eC---CCeEEEEECCCCCCceeee
Q 015363          337 FTEIIASISDIKFARNGRHILS-RD---YMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       337 ~~~h~~~i~~~~~spdg~~l~s-~~---d~~v~~wd~~~~~~~~~~~  379 (408)
                          ...+....|+|||++|+. +.   ...|.+||+.. ++..+..
T Consensus       370 ----~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~-g~~~~Lt  411 (428)
T PRK01029        370 ----PENKESPSWAIDSLHLVYSAGNSNESELYLISLIT-KKTRKIV  411 (428)
T ss_pred             ----CCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCEEEee
Confidence                124567899999998874 32   26788889875 4444333

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=2.7e-11  Score=110.09  Aligned_cols=199  Identities=12%  Similarity=0.164  Sum_probs=117.4

Q ss_pred             eeeccceEEEEECCCCCeEEEeecC---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++..                        .+....        
T Consensus       192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~------------------------~l~~~~--------  239 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR------------------------VVANFK--------  239 (427)
T ss_pred             ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE------------------------EeecCC--------
Confidence            3567789999999999999887643   35999998876531                        122122        


Q ss_pred             cccccceeEEEEeecCCCcEEEE-EeCCCeEEEEEc--CCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          109 LEIEEKINKIRWCQSANSALYLL-STNDKTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~-~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                          ..+...+|+|+  |+.|+. .+.++...+|.+  .++.........         +..       ....|+|||+.
T Consensus       240 ----g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~---------~~~-------~~~~wSpDG~~  297 (427)
T PRK02889        240 ----GSNSAPAWSPD--GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS---------GID-------TEPFFSPDGRS  297 (427)
T ss_pred             ----CCccceEECCC--CCEEEEEEccCCCceEEEEECCCCCcEECCCCC---------CCC-------cCeEEcCCCCE
Confidence                33567899765  777764 567887666654  444433321111         001       14689999998


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC---CeEEEEeC
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD---LRINLWNL  261 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d---~~i~iwd~  261 (408)
                      +           +++....+...+|. +.....    ...+.  ..........+|+|+|++++.. .+   ..|.+||+
T Consensus       298 l-----------~f~s~~~g~~~Iy~-~~~~~g----~~~~l--t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~  359 (427)
T PRK02889        298 I-----------YFTSDRGGAPQIYR-MPASGG----AAQRV--TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL  359 (427)
T ss_pred             E-----------EEEecCCCCcEEEE-EECCCC----ceEEE--ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence            7           24444456666666 322111    11111  1111223457899999998865 33   26999999


Q ss_pred             CCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC-C--eEEEEEcC
Q 015363          262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G--SIRLIDMR  313 (408)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g--~i~iwd~~  313 (408)
                      .++. ...+        ... .....+.|+|+| +.|+..+.+ |  .+.+.++.
T Consensus       360 ~~g~-~~~l--------t~~-~~~~~p~~spdg-~~l~~~~~~~g~~~l~~~~~~  403 (427)
T PRK02889        360 ATGQ-VTAL--------TDT-TRDESPSFAPNG-RYILYATQQGGRSVLAAVSSD  403 (427)
T ss_pred             CCCC-eEEc--------cCC-CCccCceECCCC-CEEEEEEecCCCEEEEEEECC
Confidence            8443 3221        111 223578999999 666666543 3  35555553

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.37  E-value=6e-11  Score=94.89  Aligned_cols=112  Identities=15%  Similarity=0.229  Sum_probs=75.8

Q ss_pred             cceeEEEEeecCCCcEEEEE--eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          113 EKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      ++|.+++|+|+  |+.||+.  ..++.|.+||++ .+....+...          ...       .+.|+|+|+.+    
T Consensus        60 ~~I~~~~WsP~--g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~----------~~n-------~i~wsP~G~~l----  115 (194)
T PF08662_consen   60 GPIHDVAWSPN--GNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQ----------PRN-------TISWSPDGRFL----  115 (194)
T ss_pred             CceEEEEECcC--CCEEEEEEccCCcccEEEcCc-ccEeEeecCC----------Cce-------EEEECCCCCEE----
Confidence            45999999876  6676554  467899999997 3323322211          111       58999999998    


Q ss_pred             ccccCccccCCC---CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c------CCeEEEEe
Q 015363          191 GCASNDSSFPPG---GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D------DLRINLWN  260 (408)
Q Consensus       191 ~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~------d~~i~iwd  260 (408)
                              +.++   ..|.+.+|| +...+      .+.   ......++.++|+|+|++|+++ .      |..++||+
T Consensus       116 --------~~~g~~n~~G~l~~wd-~~~~~------~i~---~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~  177 (194)
T PF08662_consen  116 --------VLAGFGNLNGDLEFWD-VRKKK------KIS---TFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWS  177 (194)
T ss_pred             --------EEEEccCCCcEEEEEE-CCCCE------Eee---ccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence                    5443   357899999 44211      111   2222457899999999999986 2      78899999


Q ss_pred             CCCCCce
Q 015363          261 LEISNQS  267 (408)
Q Consensus       261 ~~~~~~~  267 (408)
                      .. ++..
T Consensus       178 ~~-G~~l  183 (194)
T PF08662_consen  178 FQ-GRLL  183 (194)
T ss_pred             ec-CeEe
Confidence            97 4433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.37  E-value=3e-10  Score=103.83  Aligned_cols=201  Identities=13%  Similarity=0.126  Sum_probs=121.8

Q ss_pred             cceeEEEEeecCCCcEEEEEeCC---CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALYLLSTND---KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..+...+|+|+  |++++.+..+   ..|++||+.+++.........         ...       ...|+|+|+.+   
T Consensus       190 ~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~---------~~~-------~~~~spDg~~l---  248 (417)
T TIGR02800       190 EPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQREKVASFPG---------MNG-------APAFSPDGSKL---  248 (417)
T ss_pred             CceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC---------Ccc-------ceEECCCCCEE---
Confidence            45788889655  8888887643   489999999886554433221         111       47899999876   


Q ss_pred             cccccCccccCCCCC--ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCC--eEEEEeCCC
Q 015363          190 FGCASNDSSFPPGGV--SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLEI  263 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~--~i~iwd~~~  263 (408)
                              +++.+.+  ..|.+|+ +.....       ..+ ..+........|+|+++.|+..  .++  .|.++|+..
T Consensus       249 --------~~~~~~~~~~~i~~~d-~~~~~~-------~~l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~  311 (417)
T TIGR02800       249 --------AVSLSKDGNPDIYVMD-LDGKQL-------TRL-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG  311 (417)
T ss_pred             --------EEEECCCCCccEEEEE-CCCCCE-------EEC-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence                    2333333  4566666 332111       111 2333334567899999988764  333  577778773


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      . ....        +..+...+..+.|+|++ .+++.++.++   .|.+||+.++..     ..+...            
T Consensus       312 ~-~~~~--------l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-----~~l~~~------------  364 (417)
T TIGR02800       312 G-EVRR--------LTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-----RVLTDT------------  364 (417)
T ss_pred             C-CEEE--------eecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-----EEccCC------------
Confidence            3 3222        22234456788999999 7787777765   788999887543     222211            


Q ss_pred             cceeEEEEEccCCCEEEEeC-C---CeEEEEECCCCCCceeeeee
Q 015363          341 IASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       341 ~~~i~~~~~spdg~~l~s~~-d---~~v~~wd~~~~~~~~~~~~~  381 (408)
                       .......|+|||++|+..+ +   ..+.+.+..  ++....+..
T Consensus       365 -~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~--g~~~~~~~~  406 (417)
T TIGR02800       365 -GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD--GRFRARLPL  406 (417)
T ss_pred             -CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC--CceeeECCC
Confidence             1233468999999888763 2   345666653  455555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.36  E-value=1.1e-08  Score=85.07  Aligned_cols=299  Identities=10%  Similarity=0.121  Sum_probs=179.3

Q ss_pred             ccCcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeec---CCeEEEEEeCCC--CCCCCccccccccccccc
Q 015363           11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDT--RDNGGQRRDLEMMDYSMS   85 (408)
Q Consensus        11 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~---dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~   85 (408)
                      +..-..|++...-++....+.+.+.+.++-|+|+|++++|.++-.   +|.|--|.++..  ...               
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt---------------   79 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT---------------   79 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE---------------
Confidence            445567888865677777788889999999999999999988865   477888887753  221               


Q ss_pred             CCCccceee--eeccCCcccccccccccccceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCC-CcEEEEeccCCCCccc
Q 015363           86 RHPEFRYKT--EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKA  161 (408)
Q Consensus        86 ~~p~~~~~~--~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~-~~~~~~~~~~~~~~~~  161 (408)
                            ++.  ...+              .+-..+++  +++|++++++. .-|.|.++-++. |........-.+....
T Consensus        80 ------~ln~~~~~g--------------~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~  137 (346)
T COG2706          80 ------FLNRQTLPG--------------SPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSG  137 (346)
T ss_pred             ------EeeccccCC--------------CCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCC
Confidence                  111  1122              22467788  45688888876 568999999865 4433221111111000


Q ss_pred             CCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEe
Q 015363          162 AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN  241 (408)
Q Consensus       162 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  241 (408)
                       +.  ..-...-.....+.|+++++           ++..-....|.+|+ +.....  .......  .......+.|.|
T Consensus       138 -p~--~rQ~~~h~H~a~~tP~~~~l-----------~v~DLG~Dri~~y~-~~dg~L--~~~~~~~--v~~G~GPRHi~F  198 (346)
T COG2706         138 -PH--ERQESPHVHSANFTPDGRYL-----------VVPDLGTDRIFLYD-LDDGKL--TPADPAE--VKPGAGPRHIVF  198 (346)
T ss_pred             -CC--ccccCCccceeeeCCCCCEE-----------EEeecCCceEEEEE-cccCcc--ccccccc--cCCCCCcceEEE
Confidence             00  00000001246788999887           22223334566777 442111  1111111  133456789999


Q ss_pred             CCCCCEEEEe--cCCeEEEEeCCCCCce---eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CCeEEEEEcCCC
Q 015363          242 NSDGETFISA--DDLRINLWNLEISNQS---FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQS  315 (408)
Q Consensus       242 ~~~~~~l~~~--~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~  315 (408)
                      +|++++....  -+++|.+|..+.....   ++.+..-|..+.+ ..+...|..+|+| ++|.++.. ...|.++.+...
T Consensus       199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g-~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG-TNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC-CCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCC
Confidence            9999988775  5999999999854333   3333333444444 4556789999999 77776543 457888877654


Q ss_pred             ceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-C-CeEEEEECCCCCCceeee
Q 015363          316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATF  379 (408)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d-~~v~~wd~~~~~~~~~~~  379 (408)
                      .-.    -.+.+..        ..+....++..|+|.|++|+++. + ..|.+|..+...-.+..+
T Consensus       277 ~g~----L~~~~~~--------~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~  330 (346)
T COG2706         277 GGK----LELVGIT--------PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLL  330 (346)
T ss_pred             CCE----EEEEEEe--------ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence            221    1111110        11123468899999999999883 3 789999887643334333

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.34  E-value=2.5e-10  Score=93.63  Aligned_cols=205  Identities=12%  Similarity=0.227  Sum_probs=139.4

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      -..+++++.++++...|++|-..|++.=+.+...-.                   ...+...+..|.            .
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-------------------km~~~r~~~~h~------------~  115 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-------------------KMTFLKDYLAHQ------------A  115 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-------------------hcchhhhhhhhh------------c
Confidence            356799999999999999999999998887654321                   111234456666            7


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      .|..+.|+-  .-+++++.+.|..+.---.+.+..+.-.......              .  .+.+.-.  +        
T Consensus       116 ~v~~~if~~--~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~--------------t--~~~~d~~--~--------  167 (404)
T KOG1409|consen  116 RVSAIVFSL--THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA--------------S--ALQFDAL--Y--------  167 (404)
T ss_pred             ceeeEEecC--CceeEEEeccccceEEEeeccCCcccceEeeccC--------------C--CCceeeE--E--------
Confidence            799999964  3569999999987764444444332211111000              0  0000000  2        


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                          .+.|...+.|.+.. +....    -..+.. ..+|.+.+.+++|.|....|.+| .|..+.+||+. ..+....  
T Consensus       168 ----~fvGd~~gqvt~lr-~~~~~----~~~i~~-~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~~--  234 (404)
T KOG1409|consen  168 ----AFVGDHSGQITMLK-LEQNG----CQLITT-FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG-GRKGTAY--  234 (404)
T ss_pred             ----EEecccccceEEEE-EeecC----CceEEE-EcCcccceEEEEEcCCCcEEEeccccCceEEEecc-CCcceee--
Confidence                26777777776644 21111    112222 38999999999999999999999 99999999998 4443332  


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                          .+.+|...|..+...+-- +.+.+++.||.|.+||++..
T Consensus       235 ----el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  235 ----ELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             ----eeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccce
Confidence                267889999999888887 88999999999999998754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=7e-12  Score=108.61  Aligned_cols=166  Identities=21%  Similarity=0.271  Sum_probs=118.0

Q ss_pred             ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC-CceEEEEeCCCe
Q 015363          229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGS  306 (408)
Q Consensus       229 ~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~  306 (408)
                      +.+|.+.|++++|+.+|.+|++| +|-.+.|||.- ..+.+..+      -++|...|.++.|-|.. .+++++|..|..
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-~~KllhsI------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-EYKLLHSI------STGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecch-hcceeeee------ecccccceeEEeeeccCCCeEEEeccCcce
Confidence            58999999999999999999999 99999999998 44444443      57899999999999853 378899999999


Q ss_pred             EEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC-CEEEEe-CCCeEEEEECCCCCCceeeeeeccc
Q 015363          307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg-~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      |+++|+...+.      --..|........+.-|...|..++-.|++ ..+-++ .||+|+-+|++.+..+-.....|..
T Consensus       119 i~lfdl~~~~~------~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~  192 (758)
T KOG1310|consen  119 IKLFDLDSSKE------GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI  192 (758)
T ss_pred             EEEEecccccc------cccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence            99999986432      111122222233455667899999999998 445566 4799999999974333333322222


Q ss_pred             c----------cceEEecCCCeeeee---eceeeec
Q 015363          385 L----------RPKVMHSSKNYFMGL---DNIHTLY  407 (408)
Q Consensus       385 ~----------~~~~~~~~~~~~~~~---d~~~~~~  407 (408)
                      .          ..+..++....++++   |.|-+||
T Consensus       193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLY  228 (758)
T KOG1310|consen  193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLY  228 (758)
T ss_pred             HHHhchhhheeeeeeecCCCCceEEecCCCchhhhh
Confidence            2          222224555666655   7777777

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=4.1e-10  Score=102.75  Aligned_cols=204  Identities=14%  Similarity=0.115  Sum_probs=117.9

Q ss_pred             cceeEEEEeecCCCcEEEEEeC-CC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALYLLSTN-DK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..+.+..|+|+  |+.|+..+. ++  .|.+||+.+++..........         ..       ...|+|||+.+   
T Consensus       218 ~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~---------~~-------~~~wSPDG~~L---  276 (448)
T PRK04792        218 EPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGI---------NG-------APRFSPDGKKL---  276 (448)
T ss_pred             CcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCC---------cC-------CeeECCCCCEE---
Confidence            55888999765  888887653 33  688889988876544332211         11       46899999977   


Q ss_pred             cccccCccccCCCCCce--eeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCC--eEEEEeCCC
Q 015363          190 FGCASNDSSFPPGGVSS--LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLEI  263 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~--~i~iwd~~~  263 (408)
                              +++...++.  |.++| +...+       .+.+ ..+.......+|+||++.++..  .++  .|.++|+.+
T Consensus       277 --------a~~~~~~g~~~Iy~~d-l~tg~-------~~~l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~  339 (448)
T PRK04792        277 --------ALVLSKDGQPEIYVVD-IATKA-------LTRI-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS  339 (448)
T ss_pred             --------EEEEeCCCCeEEEEEE-CCCCC-------eEEC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence                    233444554  55555 32211       1111 2333455678999999988764  344  466667763


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CC--eEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      + +...+      +..+  ......+|+|+| +.|+..+. ++  .|.++|+.++..     ..+....           
T Consensus       340 g-~~~~L------t~~g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~-----~~lt~~~-----------  393 (448)
T PRK04792        340 G-KVSRL------TFEG--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAM-----QVLTSTR-----------  393 (448)
T ss_pred             C-CEEEE------ecCC--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCe-----EEccCCC-----------
Confidence            3 32221      1122  223457999999 66665544 44  456678777643     1121110           


Q ss_pred             cceeEEEEEccCCCEEEEe-C-CC--eEEEEECCCCCCceeeeeeccc
Q 015363          341 IASISDIKFARNGRHILSR-D-YM--TLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       341 ~~~i~~~~~spdg~~l~s~-~-d~--~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                        ......|+|||++|+.. . ++  .+.+++.  .+...+.+..+.+
T Consensus       394 --~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~--~G~~~~~l~~~~g  437 (448)
T PRK04792        394 --LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI--DGRFKARLPAGQG  437 (448)
T ss_pred             --CCCCceECCCCCEEEEEEecCCceEEEEEEC--CCCceEECcCCCC
Confidence              11234799999988765 2 33  4667776  3666666665433

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.34  E-value=1.2e-10  Score=102.01  Aligned_cols=127  Identities=12%  Similarity=0.140  Sum_probs=102.5

Q ss_pred             CCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccc
Q 015363          243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH  321 (408)
Q Consensus       243 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  321 (408)
                      .+...++-| ..|.|.+|++.. ++....+     .-..|.+.|.++.++.+- ..|.+++.|+.+..|+.......   
T Consensus        68 ~~t~~lvlgt~~g~v~~ys~~~-g~it~~~-----st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~---  137 (541)
T KOG4547|consen   68 LDTSMLVLGTPQGSVLLYSVAG-GEITAKL-----STDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVII---  137 (541)
T ss_pred             CCceEEEeecCCccEEEEEecC-CeEEEEE-----ecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceee---
Confidence            345567778 899999999984 4433322     236799999999999888 89999999999999999987543   


Q ss_pred             ccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCC
Q 015363          322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSK  394 (408)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (408)
                       +.+...            ...+.+++.+|||+.|++++. .|++||+++ ++.+.+|.||.++.+.+.+.-.
T Consensus       138 -~~~~~~------------~~~~~sl~is~D~~~l~~as~-~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  138 -RIWKEQ------------KPLVSSLCISPDGKILLTASR-QIKVLDIET-KEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             -eeeccC------------CCccceEEEcCCCCEEEeccc-eEEEEEccC-ceEEEEecCCCcceEEEEEEEe
Confidence             444444            256889999999999999985 999999998 8999999999999888775443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.33  E-value=1e-10  Score=108.91  Aligned_cols=189  Identities=16%  Similarity=0.146  Sum_probs=136.7

Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (408)
                      ...++.+..++.+.+||...+............       ..+    ....+-++++.-++            ++|+-.+
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~-------~l~----~~~~~g~s~~~~~i------------~~gsv~~  155 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC-------TLY----SSLIIGDSAEELYI------------ASGSVFG  155 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceE-------EEE----eEEEEeccCcEEEE------------Eeccccc
Confidence            457888899999999999877554433221110       000    00012233333343            8899999


Q ss_pred             eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCC
Q 015363          206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV  284 (408)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  284 (408)
                      .|.+|+ ... +.    .+.  .+.+|.+.+..+.++.||+++++. +|.++++|++++......       ..-+|...
T Consensus       156 ~iivW~-~~~-dn----~p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~-------~~fgHsaR  220 (967)
T KOG0974|consen  156 EIIVWK-PHE-DN----KPI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC-------TGFGHSAR  220 (967)
T ss_pred             cEEEEe-ccc-cC----Ccc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc-------ccccccce
Confidence            999999 431 11    111  248999999999999999999999 999999999996554431       25679999


Q ss_pred             eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCe
Q 015363          285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMT  363 (408)
Q Consensus       285 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~  363 (408)
                      |..+.|.|+   .+++++.|.+.++|+......     ..+.+|.           ...|..++..++...++|+ .|+.
T Consensus       221 vw~~~~~~n---~i~t~gedctcrvW~~~~~~l-----~~y~~h~-----------g~~iw~~~~~~~~~~~vT~g~Ds~  281 (967)
T KOG0974|consen  221 VWACCFLPN---RIITVGEDCTCRVWGVNGTQL-----EVYDEHS-----------GKGIWKIAVPIGVIIKVTGGNDST  281 (967)
T ss_pred             eEEEEeccc---eeEEeccceEEEEEeccccee-----hhhhhhh-----------hcceeEEEEcCCceEEEeeccCcc
Confidence            999999988   699999999999996654322     4566663           2478999999988888887 4799


Q ss_pred             EEEEECCC
Q 015363          364 LKLWDINM  371 (408)
Q Consensus       364 v~~wd~~~  371 (408)
                      +++||+..
T Consensus       282 lk~~~l~~  289 (967)
T KOG0974|consen  282 LKLWDLNG  289 (967)
T ss_pred             hhhhhhhc
Confidence            99999975

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.33  E-value=1.8e-11  Score=119.73  Aligned_cols=224  Identities=16%  Similarity=0.292  Sum_probs=157.7

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec-cCCcccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~~  108 (408)
                      ....|-..|.++.=+|...+.+||+.||.|++|....+...                       ..++ +..        
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v-----------------------~~~rt~g~-------- 2251 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV-----------------------VCFRTAGN-------- 2251 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE-----------------------EEeeccCc--------
Confidence            33456678999999999999999999999999998766532                       1222 122        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          ++|+.+.|+  .+|..+..+..||.+.+|.....   ....                                   
T Consensus      2252 ----s~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~pk---~~~s----------------------------------- 2287 (2439)
T KOG1064|consen 2252 ----SRVTRSRFN--HQGNKFGIVDGDGDLSLWQASPK---PYTS----------------------------------- 2287 (2439)
T ss_pred             ----chhhhhhhc--ccCCceeeeccCCceeecccCCc---ceec-----------------------------------
Confidence                668999996  45789999999999999987611   1000                                   


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe----cCCeEEEEeCCCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----DDLRINLWNLEIS  264 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~----~d~~i~iwd~~~~  264 (408)
                                                              .+.|+.....+.|-.  ..++++    +++.+.+||....
T Consensus      2288 ----------------------------------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2288 ----------------------------------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred             ----------------------------------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccC
Confidence                                                    134444455555543  455553    5789999998744


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      .....+       -..|.+.++++++.|.. ++|++|+.+|.|++||++..++.    +.++                 .
T Consensus      2326 ~~~s~v-------~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~----h~~~-----------------~ 2376 (2439)
T KOG1064|consen 2326 PMNSLV-------HTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLR----HTFQ-----------------A 2376 (2439)
T ss_pred             ccccee-------eeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHH----HHhh-----------------h
Confidence            433222       36799999999999999 99999999999999999976432    1111                 1


Q ss_pred             EEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeeceeeec
Q 015363          345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTLY  407 (408)
Q Consensus       345 ~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  407 (408)
                          +. ...++++|+ .|.++||++... ..++++..-. .+..+ ....+..+-+|.+.|||
T Consensus      2377 ----~~-~~~~f~~~ss~g~ikIw~~s~~-~ll~~~p~e~-ak~gf-Fr~~g~Q~~v~~~nrif 2432 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWRLSEF-GLLHTFPSEH-AKQGF-FRNIGMQINVGQCNRIF 2432 (2439)
T ss_pred             ----hh-hhheeeccCcccceEEEEcccc-chhhcCchhh-cccch-hhhcCceeeeccCceEE
Confidence                34 456888885 699999999974 7777775433 33333 33344677888888886

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=7.5e-10  Score=101.33  Aligned_cols=202  Identities=12%  Similarity=0.114  Sum_probs=119.0

Q ss_pred             cceeEEEEeecCCCcEEEEEeCC---CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALYLLSTND---KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..+....|+|+  |+.|+..+.+   ..|.+|++.+++...+......         ..       ...|+|+|+.+   
T Consensus       199 ~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~---------~~-------~~~~SpDG~~l---  257 (430)
T PRK00178        199 EPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGL---------NG-------APAWSPDGSKL---  257 (430)
T ss_pred             CceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCC---------cC-------CeEECCCCCEE---
Confidence            55889999765  8888776633   3689999998876554332211         11       46899999876   


Q ss_pred             cccccCccccCCCCC--ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC--CeEEEEeCCC
Q 015363          190 FGCASNDSSFPPGGV--SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD--LRINLWNLEI  263 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d--~~i~iwd~~~  263 (408)
                              +++...+  ..|.++| +.....       +.+ ..+........|+|||+.++..  .+  ..|+++|+..
T Consensus       258 --------a~~~~~~g~~~Iy~~d-~~~~~~-------~~l-t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~  320 (430)
T PRK00178        258 --------AFVLSKDGNPEIYVMD-LASRQL-------SRV-TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG  320 (430)
T ss_pred             --------EEEEccCCCceEEEEE-CCCCCe-------EEc-ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC
Confidence                    2333333  3566666 332211       111 2333445567899999877654  33  3577777763


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CC--eEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      + ....+.      ..+  .......|+|+| +.++..+. ++  .|.+||+.++..     +.+...            
T Consensus       321 g-~~~~lt------~~~--~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~~------------  373 (430)
T PRK00178        321 G-RAERVT------FVG--NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTDT------------  373 (430)
T ss_pred             C-CEEEee------cCC--CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccCC------------
Confidence            3 332221      111  223457899999 77766654 33  588899987753     222111            


Q ss_pred             cceeEEEEEccCCCEEEEeC--C--CeEEEEECCCCCCceeeeeec
Q 015363          341 IASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       341 ~~~i~~~~~spdg~~l~s~~--d--~~v~~wd~~~~~~~~~~~~~~  382 (408)
                       .......|+|||++|+..+  +  ..|.+++++  +...+.+..+
T Consensus       374 -~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~--g~~~~~l~~~  416 (430)
T PRK00178        374 -SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN--GRVRLPLPTA  416 (430)
T ss_pred             -CCCCCceECCCCCEEEEEEecCCceEEEEEECC--CCceEECcCC
Confidence             0112458999999988652  2  456666664  4555555443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.32  E-value=2.3e-09  Score=87.17  Aligned_cols=162  Identities=19%  Similarity=0.282  Sum_probs=109.1

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcC-CCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      .+|.+|.+.++    .+++. ..+.|.||... +-+....+....+|     .| ..       +++-..+...      
T Consensus        95 ~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NP-----kG-lC-------~~~~~~~k~~------  150 (346)
T KOG2111|consen   95 SEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNP-----KG-LC-------SLCPTSNKSL------  150 (346)
T ss_pred             cceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCC-----Cc-eE-------eecCCCCceE------
Confidence            66999999532    56554 45689999987 44545544443322     11 11       1111111112      


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCe-EEEEeCCCCCceee
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR-INLWNLEISNQSFN  269 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~-i~iwd~~~~~~~~~  269 (408)
                           +++-|-.-|.|.+-| +......    .-.. ..+|...|.|++.+-+|..+|++ ..|+ |+|||..++....+
T Consensus       151 -----LafPg~k~GqvQi~d-L~~~~~~----~p~~-I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E  219 (346)
T KOG2111|consen  151 -----LAFPGFKTGQVQIVD-LASTKPN----APSI-INAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE  219 (346)
T ss_pred             -----EEcCCCccceEEEEE-hhhcCcC----CceE-EEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence                 245566779999888 4332221    1122 48999999999999999999999 6664 79999997666555


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA  316 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  316 (408)
                      .-      -......|.+|+|||+. .+||+++..|+|.|+.++...
T Consensus       220 ~R------RG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  220 LR------RGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             ee------cCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCC
Confidence            31      12234669999999999 999999999999999988643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.30  E-value=5.9e-10  Score=97.85  Aligned_cols=115  Identities=17%  Similarity=0.282  Sum_probs=93.6

Q ss_pred             cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEE
Q 015363          230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  308 (408)
Q Consensus       230 ~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  308 (408)
                      ..|.+.|+++.++.+-..|.++ .|+.+..|+.. ..+.+.+       ..+....+.+++.+||+ ..+++++  ++|+
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~-------~~~~~~~~~sl~is~D~-~~l~~as--~~ik  167 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRI-------WKEQKPLVSSLCISPDG-KILLTAS--RQIK  167 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeee-------eccCCCccceEEEcCCC-CEEEecc--ceEE
Confidence            6788999999999888889988 99999999998 4555544       34556678899999999 8888875  6899


Q ss_pred             EEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC-----CCEEEEeC--CCeEEEEECCC
Q 015363          309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-----GRHILSRD--YMTLKLWDINM  371 (408)
Q Consensus       309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd-----g~~l~s~~--d~~v~~wd~~~  371 (408)
                      +||+.+++.+    ..|.+|            .+.|+++.|--+     |.++.++.  +..+.+|-+..
T Consensus       168 ~~~~~~kevv----~~ftgh------------~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  168 VLDIETKEVV----ITFTGH------------GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEccCceEE----EEecCC------------CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999999765    666666            688999999887     88888863  47788887765

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.28  E-value=4.1e-09  Score=93.03  Aligned_cols=251  Identities=11%  Similarity=0.110  Sum_probs=141.4

Q ss_pred             CeE-EEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCC
Q 015363           48 DHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS  126 (408)
Q Consensus        48 ~~l-~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~  126 (408)
                      +++ ++-..+|.|.+.|..+.+.                       +..+....            ..-..+.|+  +||
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~-----------------------~~~i~~~~------------~~h~~~~~s--~Dg   48 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKV-----------------------VARIPTGG------------APHAGLKFS--PDG   48 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SE-----------------------EEEEE-ST------------TEEEEEE-T--T-S
T ss_pred             cEEEEEecCCCEEEEEECCCCeE-----------------------EEEEcCCC------------CceeEEEec--CCC
Confidence            444 4555689999999877652                       34444332            222345674  558


Q ss_pred             cEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCce
Q 015363          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS  206 (408)
Q Consensus       127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  206 (408)
                      .++++++.||.|.++|+.+.+..........+                ..+++++||+++           +++....+.
T Consensus        49 r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~----------------~~i~~s~DG~~~-----------~v~n~~~~~  101 (369)
T PF02239_consen   49 RYLYVANRDGTVSVIDLATGKVVATIKVGGNP----------------RGIAVSPDGKYV-----------YVANYEPGT  101 (369)
T ss_dssp             SEEEEEETTSEEEEEETTSSSEEEEEE-SSEE----------------EEEEE--TTTEE-----------EEEEEETTE
T ss_pred             CEEEEEcCCCeEEEEECCcccEEEEEecCCCc----------------ceEEEcCCCCEE-----------EEEecCCCc
Confidence            89999999999999999999987766553322                268999999987           344557888


Q ss_pred             eeeceeeeccccccccccceeec------cccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcc
Q 015363          207 LRLPVVVTSQETNLVAGCRRIYA------HAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANM  278 (408)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~  278 (408)
                      +.++| ....+      .++.+.      .....++..|..+|....++..  +.+.|.+.|..........       .
T Consensus       102 v~v~D-~~tle------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~-------~  167 (369)
T PF02239_consen  102 VSVID-AETLE------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT-------T  167 (369)
T ss_dssp             EEEEE-TTT--------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE-------E
T ss_pred             eeEec-ccccc------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee-------e
Confidence            99888 33222      122110      1133567788888888866665  6689988898754332211       1


Q ss_pred             cCCcCCeEEEEEcCCCCceE-EEEeCCCeEEEEEcCCCceecccccc-cccccCC-------C-----------------
Q 015363          279 EDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKL-FEEQEAP-------G-----------------  332 (408)
Q Consensus       279 ~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~-------~-----------------  332 (408)
                      ...........|+|++ +++ ++...+..|.++|.++++.... +.. -..|..+       .                 
T Consensus       168 i~~g~~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~~-i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~  245 (369)
T PF02239_consen  168 IKVGRFPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVAL-IDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL  245 (369)
T ss_dssp             EE--TTEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEEE-EE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred             ecccccccccccCccc-ceeeecccccceeEEEeeccceEEEE-eeccccccccccccccCCCcceEEeeccccceeccc
Confidence            1123456789999999 655 4455677899999888754410 000 0000000       0                 


Q ss_pred             ----Cc-----------cccccccceeEEEEEccCCCEEEEe----CC-CeEEEEECCCCCCceeeee
Q 015363          333 ----TR-----------SFFTEIIASISDIKFARNGRHILSR----DY-MTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       333 ----~~-----------~~~~~h~~~i~~~~~spdg~~l~s~----~d-~~v~~wd~~~~~~~~~~~~  380 (408)
                          ..           ..+.....+ .-+.-+|++++|...    .+ ++|.++|.++ .+.++++.
T Consensus       246 ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t-l~~~~~i~  311 (369)
T PF02239_consen  246 IGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT-LKVVKTIT  311 (369)
T ss_dssp             EE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG-TEEEE-HH
T ss_pred             ccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC-cceeEEEe
Confidence                00           001111122 456779999999987    45 9999999997 45555554

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.27  E-value=1.5e-08  Score=87.49  Aligned_cols=254  Identities=10%  Similarity=0.116  Sum_probs=143.2

Q ss_pred             ECCCCCeEEEeec----------CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCC-ccccccccccc
Q 015363           43 FDKSGDHLATGDR----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE-PEFDYLKSLEI  111 (408)
Q Consensus        43 ~s~~~~~l~sg~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~-~~~~~~~~~~~  111 (408)
                      +||||+.|+++..          +..|.+||..+.+..                       ..+..-. +++.      .
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~-----------------------~~i~~p~~p~~~------~  103 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI-----------------------ADIELPEGPRFL------V  103 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE-----------------------eEEccCCCchhh------c
Confidence            9999998877665          679999999887642                       1111000 0000      0


Q ss_pred             ccceeEEEEeecCCCcEEEEEe-C-CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          112 EEKINKIRWCQSANSALYLLST-N-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~-~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ......++++  +||+++++.. . +..|.+.|+.+++.+.........       .++..+.. ..+....||..+.  
T Consensus       104 ~~~~~~~~ls--~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~-------~vy~t~e~-~~~~~~~Dg~~~~--  171 (352)
T TIGR02658       104 GTYPWMTSLT--PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY-------HIFPTAND-TFFMHCRDGSLAK--  171 (352)
T ss_pred             cCccceEEEC--CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc-------EEEEecCC-ccEEEeecCceEE--
Confidence            0113456775  4588888765 4 789999999999988876653321       12211111 1223345555431  


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceE-EEEeCC-CCCEEEEecCCeEEEEeCCCCCc-
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHIN-SISNNS-DGETFISADDLRINLWNLEISNQ-  266 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~-~~~~l~~~~d~~i~iwd~~~~~~-  266 (408)
                               ++-..+|....             .....+ ......+. .-.+.+ +|+.+.....|.|.+.|+..... 
T Consensus       172 ---------v~~d~~g~~~~-------------~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~  228 (352)
T TIGR02658       172 ---------VGYGTKGNPKI-------------KPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK  228 (352)
T ss_pred             ---------EEecCCCceEE-------------eeeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence                     22222222111             000000 00000000 003344 88888888459999999753221 


Q ss_pred             ---eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEE-Ee---------CCCeEEEEEcCCCceecccccccccccCCCC
Q 015363          267 ---SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SS---------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGT  333 (408)
Q Consensus       267 ---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  333 (408)
                         .+.++......-....+...-++++|++ +.+.. ..         ..+.|.++|..+++.+    ..+...     
T Consensus       229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi----~~i~vG-----  298 (352)
T TIGR02658       229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL----RKIELG-----  298 (352)
T ss_pred             ecceeeeccccccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEE----EEEeCC-----
Confidence               2222111000001123444459999999 55544 31         1258999999998765    333322     


Q ss_pred             ccccccccceeEEEEEccCCC-EEEEeC--CCeEEEEECCCCCCceeee
Q 015363          334 RSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg~-~l~s~~--d~~v~~wd~~~~~~~~~~~  379 (408)
                              ..+..++++||++ +|++.+  ++.|.+.|+.+ ++.++++
T Consensus       299 --------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i  338 (352)
T TIGR02658       299 --------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV  338 (352)
T ss_pred             --------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence                    3688999999999 777664  48999999998 7888887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.26  E-value=8.7e-10  Score=88.58  Aligned_cols=210  Identities=15%  Similarity=0.093  Sum_probs=135.7

Q ss_pred             cceeEEEEeecCC-Cc-EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          113 EKINKIRWCQSAN-SA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       113 ~~v~~v~~~p~~~-~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      +.+..+.|+-.+. |. .++-+..+|.|.++..........+..-...         ........++.|++.+..+    
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~---------ki~~~~~lslD~~~~~~~i----  136 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK---------KISVVEALSLDISTSGTKI----  136 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh---------hhhheeeeEEEeeccCceE----
Confidence            5578888875433 33 4566678899999987755443333221100         0000012256778877776    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCcee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                              +++..+|.+.+-+   ..+..  -+..+. .+.|........|+... +++.+| +|+.+..||++.++..+
T Consensus       137 --------~vs~s~G~~~~v~---~t~~~--le~vq~-wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  137 --------FVSDSRGSISGVY---ETEMV--LEKVQT-WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             --------EEEcCCCcEEEEe---cceee--eeeccc-ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence                    7777788777422   11111  111122 47888889888888654 677788 99999999999665443


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      ..      ...-|...|.+|.-+|..+.++++|+.|-.|++||.|+...   |+.  ++.-           .+.|+.+.
T Consensus       203 ~~------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k---Pl~--~~~v-----------~GGVWRi~  260 (339)
T KOG0280|consen  203 WH------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK---PLF--KAKV-----------GGGVWRIK  260 (339)
T ss_pred             ee------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC---ccc--cCcc-----------ccceEEEE
Confidence            21      24568889999999988779999999999999999996532   222  2221           37899999


Q ss_pred             EccC--CCEEEEeCCCeEEEEECCC
Q 015363          349 FARN--GRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       349 ~spd--g~~l~s~~d~~v~~wd~~~  371 (408)
                      ++|.  +++|+++-.+-.+|-+.+.
T Consensus       261 ~~p~~~~~lL~~CMh~G~ki~~~~~  285 (339)
T KOG0280|consen  261 HHPEIFHRLLAACMHNGAKILDSSD  285 (339)
T ss_pred             ecchhhhHHHHHHHhcCceEEEecc
Confidence            9994  3455555444556666554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=2.8e-09  Score=96.49  Aligned_cols=205  Identities=12%  Similarity=0.137  Sum_probs=115.4

Q ss_pred             eccceEEEEECCCCCeE---EEeecCC--eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           34 EVDIISAIEFDKSGDHL---ATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l---~sg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ....+.+-+|+|||+.+   ++...+|  .|.+.++.+++..                     .+..+.+.         
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~---------------------~lt~~~g~---------  232 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK---------------------KILALQGN---------  232 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce---------------------EeecCCCC---------
Confidence            34456778999998742   2444444  4666677666431                     22233332         


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeC-----CCeEEEEEcCCC---cEEEEeccCCCCcccCCCCCeEeecCCceeeEEc
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTN-----DKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM  180 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~-----d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  180 (408)
                            ....+|+|+  |+.|+..+.     |-.+..|++..+   +...+......        ..       ....|+
T Consensus       233 ------~~~p~wSPD--G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~--------~~-------~~p~wS  289 (428)
T PRK01029        233 ------QLMPTFSPR--KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFG--------TQ-------GNPSFS  289 (428)
T ss_pred             ------ccceEECCC--CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCC--------Cc-------CCeEEC
Confidence                  446789755  878877653     223445676643   22222221100        00       146899


Q ss_pred             cCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--c--CCeE
Q 015363          181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--DLRI  256 (408)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~--d~~i  256 (408)
                      |||+.+           +++...++...+|. +.....   ....+.+ ..+...+....|+|||+.|+..  .  ...|
T Consensus       290 PDG~~L-----------af~s~~~g~~~ly~-~~~~~~---g~~~~~l-t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I  353 (428)
T PRK01029        290 PDGTRL-----------VFVSNKDGRPRIYI-MQIDPE---GQSPRLL-TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQI  353 (428)
T ss_pred             CCCCEE-----------EEEECCCCCceEEE-EECccc---ccceEEe-ccCCCCccceeECCCCCEEEEEEcCCCCcEE
Confidence            999976           24444456555555 221100   0111111 2333456788999999988865  3  3479


Q ss_pred             EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC---CCeEEEEEcCCCce
Q 015363          257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSAL  317 (408)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~  317 (408)
                      .+||+.++ ....        +......+....|+|+| +.|+....   ...|.++|+..++.
T Consensus       354 ~v~dl~~g-~~~~--------Lt~~~~~~~~p~wSpDG-~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        354 CVYDLATG-RDYQ--------LTTSPENKESPSWAIDS-LHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             EEEECCCC-CeEE--------ccCCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCE
Confidence            99999844 3332        22223345679999999 66654433   35788889887754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=1.9e-09  Score=98.66  Aligned_cols=199  Identities=15%  Similarity=0.185  Sum_probs=115.2

Q ss_pred             eeeccceEEEEECCCCCeEEEeecC---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ..+...+...+|+|||+.|+..+.+   ..|.+|++.+++..                        .+....        
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~------------------------~l~~~~--------  242 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE------------------------QITNFE--------  242 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE------------------------EccCCC--------
Confidence            3567788999999999998876644   36888898776421                        111111        


Q ss_pred             cccccceeEEEEeecCCCcEEEE-EeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          109 LEIEEKINKIRWCQSANSALYLL-STNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                          ..+...+|+|+  |+.|+. ...++  .|.+||+.+++.........         ..       ....|+|+|+.
T Consensus       243 ----g~~~~~~~SpD--G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~---------~~-------~~~~~spDg~~  300 (430)
T PRK00178        243 ----GLNGAPAWSPD--GSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA---------ID-------TEPFWGKDGRT  300 (430)
T ss_pred             ----CCcCCeEECCC--CCEEEEEEccCCCceEEEEECCCCCeEEcccCCC---------Cc-------CCeEECCCCCE
Confidence                22456889755  777764 44454  68888998887654332211         01       14689999987


Q ss_pred             eecccccccCccccCCCCCc--eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCC--eEEEE
Q 015363          186 GERNFGCASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL--RINLW  259 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~--~i~iw  259 (408)
                      +           +++...++  .|.+++ +...+      ..+....+  .......|+|+|+.++..  .++  .|.++
T Consensus       301 i-----------~f~s~~~g~~~iy~~d-~~~g~------~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~  360 (430)
T PRK00178        301 L-----------YFTSDRGGKPQIYKVN-VNGGR------AERVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQ  360 (430)
T ss_pred             E-----------EEEECCCCCceEEEEE-CCCCC------EEEeecCC--CCccceEECCCCCEEEEEEccCCceEEEEE
Confidence            6           23333344  344444 22211      11111111  223356899999998865  333  57888


Q ss_pred             eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCC
Q 015363          260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQS  315 (408)
Q Consensus       260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~  315 (408)
                      |+.++. ...+        .. ........|+|+| +.++..+.+   ..|.++++...
T Consensus       361 dl~tg~-~~~l--------t~-~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        361 DLQRGS-VRIL--------TD-TSLDESPSVAPNG-TMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             ECCCCC-EEEc--------cC-CCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCC
Confidence            988433 2221        11 1112256899999 666655543   34666676543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.23  E-value=1.6e-09  Score=99.10  Aligned_cols=197  Identities=14%  Similarity=0.159  Sum_probs=117.5

Q ss_pred             eeeccceEEEEECCCCCeEEEeecC---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ..+...+.+.+|+|||++||.++..   ..|.+|++.++...                        .+..+.        
T Consensus       186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~------------------------~~~~~~--------  233 (417)
T TIGR02800       186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE------------------------KVASFP--------  233 (417)
T ss_pred             ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE------------------------EeecCC--------
Confidence            3456678899999999999987654   47999998776421                        122222        


Q ss_pred             cccccceeEEEEeecCCCcEEEE-EeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          109 LEIEEKINKIRWCQSANSALYLL-STNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                          ..+.+++|+|+  |+.|+. .+.++  .|.+|++.++...........         .       ....|+|+|+.
T Consensus       234 ----~~~~~~~~spD--g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~---------~-------~~~~~s~dg~~  291 (417)
T TIGR02800       234 ----GMNGAPAFSPD--GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGI---------D-------TEPSWSPDGKS  291 (417)
T ss_pred             ----CCccceEECCC--CCEEEEEECCCCCccEEEEECCCCCEEECCCCCCC---------C-------CCEEECCCCCE
Confidence                33567889655  766664 44444  588889988765544322110         1       13578899987


Q ss_pred             eecccccccCccccCCCCCc--eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC---eEEEE
Q 015363          186 GERNFGCASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL---RINLW  259 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~---~i~iw  259 (408)
                      +           +++....+  .|.+++ +...+       ...+ ..+......+.|+|++++++.+ .++   .|.+|
T Consensus       292 l-----------~~~s~~~g~~~iy~~d-~~~~~-------~~~l-~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~  351 (417)
T TIGR02800       292 I-----------AFTSDRGGSPQIYMMD-ADGGE-------VRRL-TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM  351 (417)
T ss_pred             E-----------EEEECCCCCceEEEEE-CCCCC-------EEEe-ecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence            6           23333333  455545 22111       1111 2233456678999999998877 444   78888


Q ss_pred             eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEEEEcC
Q 015363          260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMR  313 (408)
Q Consensus       260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~  313 (408)
                      |+.+ +.. ..       +... .......|+|++ +.|+..+.++   .+.+.+..
T Consensus       352 d~~~-~~~-~~-------l~~~-~~~~~p~~spdg-~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       352 DLDG-GGE-RV-------LTDT-GLDESPSFAPNG-RMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             eCCC-CCe-EE-------ccCC-CCCCCceECCCC-CEEEEEEeCCCcEEEEEEECC
Confidence            9874 322 22       1111 123456899999 6666665543   45555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=1.6e-09  Score=98.97  Aligned_cols=199  Identities=14%  Similarity=0.134  Sum_probs=110.4

Q ss_pred             eeccceEEEEECCCCCeEEEeecC-C--eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRG-G--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~d-g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++..                     .+..+.            
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---------------------~lt~~~------------  261 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---------------------KVTSFP------------  261 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---------------------EecCCC------------
Confidence            456678899999999988876543 3  5778888766421                     111122            


Q ss_pred             ccccceeEEEEeecCCCcEEEE-EeCCCe--EEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          110 EIEEKINKIRWCQSANSALYLL-STNDKT--IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~-~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                         ......+|+|+  |+.|+. .+.++.  |.++|+.+++..........         .       ....|+|||+.+
T Consensus       262 ---g~~~~~~wSPD--G~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~---------~-------~~p~wSpDG~~I  320 (448)
T PRK04792        262 ---GINGAPRFSPD--GKKLALVLSKDGQPEIYVVDIATKALTRITRHRAI---------D-------TEPSWHPDGKSL  320 (448)
T ss_pred             ---CCcCCeeECCC--CCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCC---------c-------cceEECCCCCEE
Confidence               22346789755  777765 456664  77778888775543322110         1       146899999877


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCC--eEEEEeCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLE  262 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~--~i~iwd~~  262 (408)
                                 +++...++...+|. +....    ++..+.  ..........+|+|||+.++..  .++  .|.++|+.
T Consensus       321 -----------~f~s~~~g~~~Iy~-~dl~~----g~~~~L--t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~  382 (448)
T PRK04792        321 -----------IFTSERGGKPQIYR-VNLAS----GKVSRL--TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE  382 (448)
T ss_pred             -----------EEEECCCCCceEEE-EECCC----CCEEEE--ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECC
Confidence                       23333344444443 21111    111111  1111223456899999988765  444  45556776


Q ss_pred             CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe-CCC--eEEEEEcCC
Q 015363          263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRLIDMRQ  314 (408)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg--~i~iwd~~~  314 (408)
                      ++. ...+        ... .......|+|+| +.|+..+ .++  .+.+++...
T Consensus       383 ~g~-~~~l--------t~~-~~d~~ps~spdG-~~I~~~~~~~g~~~l~~~~~~G  426 (448)
T PRK04792        383 TGA-MQVL--------TST-RLDESPSVAPNG-TMVIYSTTYQGKQVLAAVSIDG  426 (448)
T ss_pred             CCC-eEEc--------cCC-CCCCCceECCCC-CEEEEEEecCCceEEEEEECCC
Confidence            332 2221        111 112245899999 6555544 344  366777643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=2.9e-10  Score=97.39  Aligned_cols=270  Identities=13%  Similarity=0.135  Sum_probs=177.1

Q ss_pred             ceeeccceEEEEECCC--CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           31 EVQEVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ..+|...|..-.|-|.  .+-+++++.||.|++=.+......                    +-...+..|.        
T Consensus       181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~--------------------e~t~rl~~h~--------  232 (559)
T KOG1334|consen  181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV--------------------ENTKRLAPHE--------  232 (559)
T ss_pred             ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce--------------------ecceeccccc--------
Confidence            4579899998889884  567999999999998876543211                    0112345566        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          ++|..++.-|... ..|.+++.|+.+.-.|++.+.....+.......    ...|.     ...++..|-....  
T Consensus       233 ----g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~----~~~v~-----L~~Ia~~P~nt~~--  296 (559)
T KOG1334|consen  233 ----GPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE----KERVG-----LYTIAVDPRNTNE--  296 (559)
T ss_pred             ----CccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCC----cccee-----eeeEecCCCCccc--
Confidence                7788899877655 478899999999999998765433332111110    00111     1145555554432  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceee-----ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-----AHAHDYHINSISNNSDGETFISA-DDLRINLWNLE  262 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~  262 (408)
                               +++++.+..+++|| ..+.........+..+     .....-.|++++++.++.-|.++ .|-.|+++.-.
T Consensus       297 ---------faVgG~dqf~RvYD-~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~  366 (559)
T KOG1334|consen  297 ---------FAVGGSDQFARVYD-QRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS  366 (559)
T ss_pred             ---------cccCChhhhhhhhc-ccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence                     48899999999999 5553333222222222     22334569999999887766666 89999999554


Q ss_pred             CCCc--eeeEe---ecCCCcccCCcCC--eEEEEE-cCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCc
Q 015363          263 ISNQ--SFNIV---DVKPANMEDLTEV--ITSAEF-HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  334 (408)
Q Consensus       263 ~~~~--~~~~~---~~~~~~~~~~~~~--v~~~~~-~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  334 (408)
                      .+..  +...-   ...+..+.+|...  |..+-| -|.. .++++|+.=|.|.||+-.+++.+    ..+++..     
T Consensus       367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~eii----~~MegDr-----  436 (559)
T KOG1334|consen  367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGEII----RFMEGDR-----  436 (559)
T ss_pred             cccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecchhHHH----HHhhccc-----
Confidence            2211  00000   0001125667543  556655 5666 89999999999999999998665    6666653     


Q ss_pred             cccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          335 SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       335 ~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                             .-|+|+-=+|--..||+++ |..|+||--.+
T Consensus       437 -------~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  437 -------HVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             -------ceEeccCCCCCCchhhccCCccceeeecCCc
Confidence                   4799999999999999886 79999998743

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=2.3e-09  Score=96.41  Aligned_cols=282  Identities=13%  Similarity=0.159  Sum_probs=170.7

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      +.......|++|+....++|+|+.||.+++..+.+..... ..+.       ++...+...-+.+.||+           
T Consensus        11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~-~~~g-------laa~snLsmNQtLeGH~-----------   71 (1189)
T KOG2041|consen   11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDL-NKSG-------LAAASNLSMNQTLEGHN-----------   71 (1189)
T ss_pred             CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcc-cccc-------cccccccchhhhhccCc-----------
Confidence            3456678999999999999999999999999988765321 1111       11222333446788998           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       +.|..+.|.  .+.+.|-++..+|.|.+|-+-.+........+.       +.++..      +++|..+|..+     
T Consensus        72 -~sV~vvTWN--e~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnR-------nKSvV~------SmsWn~dG~kI-----  130 (1189)
T KOG2041|consen   72 -ASVMVVTWN--ENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNR-------NKSVVV------SMSWNLDGTKI-----  130 (1189)
T ss_pred             -ceEEEEEec--cccccccccCCCceEEEEeeecccHHHHHhhCc-------CccEEE------EEEEcCCCcEE-----
Confidence             779999995  556788888999999999887765432221111       112221      68999999887     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             .....||.|.+=. +   ++.....  +. +.  ......+.|++|.+.+..+ ..|.+++||.+. .-..++
T Consensus       131 -------cIvYeDGavIVGs-v---dGNRIwg--Ke-Lk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqg-nF~~Kl  193 (1189)
T KOG2041|consen  131 -------CIVYEDGAVIVGS-V---DGNRIWG--KE-LK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQG-NFERKL  193 (1189)
T ss_pred             -------EEEEccCCEEEEe-e---ccceecc--hh-cc--hheccceeecccHHHHHhhhcCCcEEEecccc-cHHHhh
Confidence                   5566676665433 1   1111110  00 01  1234577899999888888 899999999862 211110


Q ss_pred             -----eecCCCcccCCcCCeEEEEEc--------CCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccc
Q 015363          271 -----VDVKPANMEDLTEVITSAEFH--------PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF  337 (408)
Q Consensus       271 -----~~~~~~~~~~~~~~v~~~~~~--------p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (408)
                           ++.. ..+......+..+.|.        |+. ..|+.+-.+|.+.|-.-.+..   .|+ .+..          
T Consensus       194 ~~~c~Vn~t-g~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~---~Pv-v~dt----------  257 (1189)
T KOG2041|consen  194 EKDCEVNGT-GIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDP---EPV-VVDT----------  257 (1189)
T ss_pred             hhceEEeee-eeecCCCccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCC---CCe-EEec----------
Confidence                 0000 0011122224455553        465 678888888887774322211   111 1111          


Q ss_pred             ccccceeEEEEEccCCCEEEEeC-C---------CeEEEEECCCCCCceeeeeecccccceEEe
Q 015363          338 TEIIASISDIKFARNGRHILSRD-Y---------MTLKLWDINMDSGPVATFQVHEHLRPKVMH  391 (408)
Q Consensus       338 ~~h~~~i~~~~~spdg~~l~s~~-d---------~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~  391 (408)
                         ...|..+.|+++|.+|+.++ +         +.|.++.-  -|..+.+++........++-
T Consensus       258 ---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp--~G~i~gtlkvpg~~It~lsW  316 (1189)
T KOG2041|consen  258 ---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP--YGHIVGTLKVPGSCITGLSW  316 (1189)
T ss_pred             ---ccEeecceecCCCcEEEEccCcccccCccccceEEEecc--chhheEEEecCCceeeeeEE
Confidence               14688999999999999752 1         34555544  36667777665555555543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.19  E-value=2.3e-07  Score=82.06  Aligned_cols=220  Identities=10%  Similarity=0.111  Sum_probs=126.9

Q ss_pred             cceeEEEEeecCCCcEEEEEeC----CCeEEEEEcCCC--cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          113 EKINKIRWCQSANSALYLLSTN----DKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~----d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                      .....++++|  ++.+|.++..    ++.|..|++...  ++..+-...             ..+..+..++.+|+++.+
T Consensus        37 ~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-------------~~g~~p~~i~~~~~g~~l  101 (345)
T PF10282_consen   37 ENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-------------SGGSSPCHIAVDPDGRFL  101 (345)
T ss_dssp             SSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-------------ESSSCEEEEEECTTSSEE
T ss_pred             CCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-------------cCCCCcEEEEEecCCCEE
Confidence            3466788865  4778887765    579999988763  443322221             112233368899999987


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccc-ccccccccee---e---ccccccceEEEEeCCCCCEEEEe--cCCeEE
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQE-TNLVAGCRRI---Y---AHAHDYHINSISNNSDGETFISA--DDLRIN  257 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~---~---~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~  257 (408)
                                 +++-..++.|.+++ +.... ........+.   -   .........++.++|+++++++.  ....|.
T Consensus       102 -----------~vany~~g~v~v~~-l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~  169 (345)
T PF10282_consen  102 -----------YVANYGGGSVSVFP-LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY  169 (345)
T ss_dssp             -----------EEEETTTTEEEEEE-ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             -----------EEEEccCCeEEEEE-ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence                       23345688888887 44321 1111000000   0   01123557899999999988876  577899


Q ss_pred             EEeCCCCCceeeE-eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC--CCceecccccccccccCCCCc
Q 015363          258 LWNLEISNQSFNI-VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR--QSALCDTHSKLFEEQEAPGTR  334 (408)
Q Consensus       258 iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~  334 (408)
                      +|+++.....+.. ..+   .+. .....+.+.|+|++..++++...+++|.++++.  .+...  .+........    
T Consensus       170 ~~~~~~~~~~l~~~~~~---~~~-~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~--~~~~~~~~~~----  239 (345)
T PF10282_consen  170 VYDIDDDTGKLTPVDSI---KVP-PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT--EIQTISTLPE----  239 (345)
T ss_dssp             EEEE-TTS-TEEEEEEE---ECS-TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESCET----
T ss_pred             EEEEeCCCceEEEeecc---ccc-cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee--EEEEeeeccc----
Confidence            9999854422211 111   122 245578999999994444555568899999998  33221  1111111100    


Q ss_pred             cccccccceeEEEEEccCCCEEEEeC--CCeEEEEECCC
Q 015363          335 SFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINM  371 (408)
Q Consensus       335 ~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~  371 (408)
                       -+.+ ......++++|||++|+++.  .++|.+|+++.
T Consensus       240 -~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  240 -GFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             -TSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             -cccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence             0111 12578899999999999873  48999999953

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=1.1e-09  Score=95.92  Aligned_cols=165  Identities=12%  Similarity=0.164  Sum_probs=113.8

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      +.++++..++-  ..+|++|+.+|.|..||.+.......+......                   .-.|-          
T Consensus       176 ~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v-------------------~s~pg----------  224 (703)
T KOG2321|consen  176 GELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV-------------------NSHPG----------  224 (703)
T ss_pred             ccceeeeecCc--cceEEecccCceEEEecchhhhhheeeeccccc-------------------CCCcc----------
Confidence            66899999754  448999999999999999987665544332110                   00000          


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                                                           ......|+++.|+.+|-.+++| .+|.|.|||+++....+.. 
T Consensus       225 -------------------------------------~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-  266 (703)
T KOG2321|consen  225 -------------------------------------GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-  266 (703)
T ss_pred             -------------------------------------ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-
Confidence                                                 1111458999999999999999 9999999999965554421 


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCC-ceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                            -.+...+|..+.|.+.+. ..+++ .....++|||-.+|+..    ..++.             +..++++++-
T Consensus       267 ------dh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~----asiEp-------------t~~lND~C~~  322 (703)
T KOG2321|consen  267 ------DHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPM----ASIEP-------------TSDLNDFCFV  322 (703)
T ss_pred             ------ccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCce----eeccc-------------cCCcCceeee
Confidence                  223356788999987742 34444 45678999999998543    23332             2569999999


Q ss_pred             cCCCEEEEeCC-CeEEEEECC
Q 015363          351 RNGRHILSRDY-MTLKLWDIN  370 (408)
Q Consensus       351 pdg~~l~s~~d-~~v~~wd~~  370 (408)
                      |++-+++++.+ ..+..|=+.
T Consensus       323 p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  323 PGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             cCCceEEEecCCCcceeEEcc
Confidence            99989988854 555555443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.18  E-value=4.9e-09  Score=86.18  Aligned_cols=264  Identities=14%  Similarity=0.213  Sum_probs=149.6

Q ss_pred             cceeeecccCcCc----ccceeeccceEEEEECCCCC--eEEEeecCCeEEEEEeCCCCCCCCcccccccccc-----c-
Q 015363           16 EWKFSQVFGERTA----GEEVQEVDIISAIEFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDY-----S-   83 (408)
Q Consensus        16 ~w~~~~~~~~~~~----~~~~~h~~~V~~~~~s~~~~--~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~-   83 (408)
                      .+++...|....+    ...+.-...|+.+.|.+++.  .+...+.|.+|++|.+....... ..-.++..+.     . 
T Consensus        61 ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~~~~~~~~~~l  139 (433)
T KOG1354|consen   61 EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPEEGPPGTITSL  139 (433)
T ss_pred             ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-ccccccccCCCCcccee
Confidence            5667666643322    22334567899999999754  56677789999999987654321 0000111000     0 


Q ss_pred             -c------cCCCccceeeee-ccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCC-CcEEEEecc
Q 015363           84 -M------SRHPEFRYKTEF-QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDW  154 (408)
Q Consensus        84 -~------~~~p~~~~~~~~-~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~  154 (408)
                       +      ....+..+...+ .+|.            -.|++|.++  .|++.+++ +.|=.|.+|+++- .+.-.+...
T Consensus       140 r~p~~~~~~~~vea~prRv~aNaHt------------yhiNSIS~N--sD~Et~lS-ADdLRINLWnlei~d~sFnIVDI  204 (433)
T KOG1354|consen  140 RLPVEGRHDLEVEASPRRVYANAHT------------YHINSISVN--SDKETFLS-ADDLRINLWNLEIIDQSFNIVDI  204 (433)
T ss_pred             eceeeccccceeeeeeeeeccccce------------eEeeeeeec--CccceEee-ccceeeeeccccccCCceeEEEc
Confidence             0      000011111111 3344            669999994  55666655 5677899999873 232232222


Q ss_pred             CCCC-cccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccc---------ccccc
Q 015363          155 NVHP-EKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN---------LVAGC  224 (408)
Q Consensus       155 ~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~  224 (408)
                      .... +..  ...|       ++..|+|..-.+           ++..+..|+|++-| ++....-         +....
T Consensus       205 KP~nmEeL--teVI-------TsaEFhp~~cn~-----------f~YSSSKGtIrLcD-mR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  205 KPANMEEL--TEVI-------TSAEFHPHHCNV-----------FVYSSSKGTIRLCD-MRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             cccCHHHH--HHHH-------hhhccCHhHccE-----------EEEecCCCcEEEee-chhhhhhcchhhhhccccCCc
Confidence            2111 000  0000       133455554332           35677889999988 5421110         00001


Q ss_pred             ceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCccc---C--CcCCe---EEEEEcCCCCc
Q 015363          225 RRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANME---D--LTEVI---TSAEFHPTHCN  296 (408)
Q Consensus       225 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~--~~~~v---~~~~~~p~~~~  296 (408)
                      -+.+...--..|..+.|+++|+++++-+--+|++||+....++...+++...-..   .  ....|   ..++|+-++ .
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-~  342 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND-S  342 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc-c
Confidence            1111223335678899999999999988899999999866767766544221000   0  01112   467899888 8


Q ss_pred             eEEEEeCCCeEEEEEcCCCce
Q 015363          297 MLAYSSSKGSIRLIDMRQSAL  317 (408)
Q Consensus       297 ~l~s~~~dg~i~iwd~~~~~~  317 (408)
                      ++++|+.....++++...|..
T Consensus       343 ~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  343 YVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             eEecccccceEEEecCCCCcc
Confidence            999999999999999766643

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.15  E-value=1.3e-08  Score=80.88  Aligned_cols=246  Identities=12%  Similarity=0.062  Sum_probs=149.7

Q ss_pred             CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCc
Q 015363           48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA  127 (408)
Q Consensus        48 ~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~  127 (408)
                      .+||.|+..|...+|...+.+..                      +.....|...+         .-+...+-+    ..
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h----------------------~~~cd~snn~v---------~~~~r~cd~----~~  129 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGH----------------------LYQCDVSNNDV---------TLVKRYCDL----KF  129 (344)
T ss_pred             cEEEeccccceeeeecccCcccc----------------------eeeecccccch---------hhhhhhccc----cc
Confidence            47999999999999998876531                      12222222110         001111211    22


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCcee
Q 015363          128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL  207 (408)
Q Consensus       128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  207 (408)
                      .+..++.|.++++.+++.+........+.-        ...       .+.++++++.+            ++.+....|
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~--------~~n-------s~~~snd~~~~------------~~Vgds~~V  182 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNL--------TQN-------SLHYSNDPSWG------------SSVGDSRRV  182 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeecccc--------cee-------eeEEcCCCceE------------EEecCCCcc
Confidence            567788999999999886644333322210        011       57888999887            777777777


Q ss_pred             eeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE
Q 015363          208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT  286 (408)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  286 (408)
                      -.|. +.+....    ..++........-.+..|+.....+|++ .||++.|||++....+...+.   .+-+.|.+.++
T Consensus       183 f~y~-id~~sey----~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s---strp~hnGa~R  254 (344)
T KOG4532|consen  183 FRYA-IDDESEY----IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS---STRPHHNGAFR  254 (344)
T ss_pred             eEEE-eCCccce----eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc---ccCCCCCCceE
Confidence            7776 4331111    1111112223344577899999999999 999999999997665543321   23456899999


Q ss_pred             EEEEcCCCCc-eEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEE
Q 015363          287 SAEFHPTHCN-MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK  365 (408)
Q Consensus       287 ~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~  365 (408)
                      .+.|+|-|.. +|...-.=+.+.+.|+|++..+... ...+..       .+...+..|..-.|+.++.-+.+.+.-.+.
T Consensus       255 ~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I-~i~~d~-------~~~~~tq~ifgt~f~~~n~s~~v~~e~~~a  326 (344)
T KOG4532|consen  255 VCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI-VIPDDV-------ERKHNTQHIFGTNFNNENESNDVKNELQGA  326 (344)
T ss_pred             EEEecCCCcceEEEEecCcceEEEEEcccCceeeEE-ecCccc-------cccccccccccccccCCCcccccccchhhh
Confidence            9999987643 4444445688999999998765211 111110       111113447777888877777666554666


Q ss_pred             EEECCC
Q 015363          366 LWDINM  371 (408)
Q Consensus       366 ~wd~~~  371 (408)
                      -|++..
T Consensus       327 e~ni~s  332 (344)
T KOG4532|consen  327 EYNILS  332 (344)
T ss_pred             eeeccc
Confidence            677754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.11  E-value=4.2e-08  Score=84.31  Aligned_cols=121  Identities=12%  Similarity=0.122  Sum_probs=86.9

Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCC-eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDK-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      .+...|.-..+.-.  ++-++.|..|| .+-++|..+++.......         -+.+.       ++..+++|+.+  
T Consensus       357 ~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~e~kr~e~~---------lg~I~-------av~vs~dGK~~--  416 (668)
T COG4946         357 GKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGGEVKRIEKD---------LGNIE-------AVKVSPDGKKV--  416 (668)
T ss_pred             CCCCceEEEEEccC--CcceEEeccCCceEEEEecCCceEEEeeCC---------ccceE-------EEEEcCCCcEE--
Confidence            44466777777544  45788899999 999999999987765544         23455       68999999987  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c----CCeEEEEeCCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D----DLRINLWNLEI  263 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~----d~~i~iwd~~~  263 (408)
                                +.+.....+.+.| +.+......       .....+-|+.++|+|+++++|-+ -    ...|+++|+. 
T Consensus       417 ----------vvaNdr~el~vid-idngnv~~i-------dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~-  477 (668)
T COG4946         417 ----------VVANDRFELWVID-IDNGNVRLI-------DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD-  477 (668)
T ss_pred             ----------EEEcCceEEEEEE-ecCCCeeEe-------cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC-
Confidence                      7777777788777 544333222       23344679999999999999987 3    4578999998 


Q ss_pred             CCceee
Q 015363          264 SNQSFN  269 (408)
Q Consensus       264 ~~~~~~  269 (408)
                      +++...
T Consensus       478 ~~Kiy~  483 (668)
T COG4946         478 GGKIYD  483 (668)
T ss_pred             CCeEEE
Confidence            444443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.08  E-value=2e-07  Score=91.64  Aligned_cols=296  Identities=14%  Similarity=0.186  Sum_probs=156.3

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCC---CccceeeeeccCCccccc------
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRH---PEFRYKTEFQSHEPEFDY------  105 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~~h~~~~~~------  105 (408)
                      .+.|.|++||||+.+||..+.++++.+...+-..   ....++...+.....+   .=++..+.|+|..+.-..      
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~---i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p  196 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDP---ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP  196 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE---EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence            4689999999999999999999998876532110   0001111100000000   000011222222211000      


Q ss_pred             -c-----cccccccceeEEEEeecCCCcEEEEEeC------CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCC
Q 015363          106 -L-----KSLEIEEKINKIRWCQSANSALYLLSTN------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS  173 (408)
Q Consensus       106 -~-----~~~~~~~~v~~v~~~p~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  173 (408)
                       +     ..+...+.-..|+|  ..||++||+.+-      -+.+|||+-+ |....+.+....        -       
T Consensus       197 ~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g--------L-------  258 (928)
T PF04762_consen  197 TVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG--------L-------  258 (928)
T ss_pred             CCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC--------c-------
Confidence             0     00002234567889  678999999763      2689999876 544443331110        0       


Q ss_pred             ceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c
Q 015363          174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D  252 (408)
Q Consensus       174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~  252 (408)
                      ...++|-|.|..|+..+...+         ...|.+|+ -   ++...++..-.+ ......|..+.|++|+.+||.. .
T Consensus       259 e~~l~WrPsG~lIA~~q~~~~---------~~~VvFfE-r---NGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~  324 (928)
T PF04762_consen  259 EGALSWRPSGNLIASSQRLPD---------RHDVVFFE-R---NGLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLE  324 (928)
T ss_pred             cCCccCCCCCCEEEEEEEcCC---------CcEEEEEe-c---CCcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEec
Confidence            116899999998844332111         24455554 1   111111111111 2345678999999999999998 5


Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC----CCcee---c-ccccc
Q 015363          253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR----QSALC---D-THSKL  324 (408)
Q Consensus       253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~----~~~~~---~-~~~~~  324 (408)
                      |. |.+|-..+.. -+....+   .+.. ...+..+.|+|..+..|...+.+|.+..++..    .+...   + ..+..
T Consensus       325 ~~-vqLWt~~NYH-WYLKqei---~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaV  398 (928)
T PF04762_consen  325 DR-VQLWTRSNYH-WYLKQEI---RFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAV  398 (928)
T ss_pred             CC-ceEEEeeCCE-EEEEEEE---EccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEE
Confidence            54 9999887432 1111111   0222 23344599999887888888887777665432    11000   0 00011


Q ss_pred             ccc----------ccCCCCcccc-ccccceeEEEEEccCCCEEEEe-CCCeEEEEECCC
Q 015363          325 FEE----------QEAPGTRSFF-TEIIASISDIKFARNGRHILSR-DYMTLKLWDINM  371 (408)
Q Consensus       325 ~~~----------~~~~~~~~~~-~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~  371 (408)
                      ..|          -.-|.+...+ -.....|.+++|++++..+++- +|+.|.+|....
T Consensus       399 IDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  399 IDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             EeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence            111          1011111111 1234689999999988766665 689999998654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.07  E-value=1.6e-08  Score=81.53  Aligned_cols=127  Identities=12%  Similarity=0.056  Sum_probs=94.3

Q ss_pred             eEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 015363          236 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  314 (408)
Q Consensus       236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  314 (408)
                      ..++.|++.+..++++ ++|.+.+-+... ....+.     +..+.|.-.++...|+...++++.+|+.|+.+..||+|.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~-~~le~v-----q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~  197 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETE-MVLEKV-----QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI  197 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecce-eeeeec-----ccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence            4577899999999999 899998544431 111111     236789999999999988889999999999999999994


Q ss_pred             CceecccccccccccCCCCccccccccceeEEEEEcc-CCCEEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363          315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      .+.     ..+...         +-|...|.++.-+| .+.+|++|+ |..|++||.++-++++..-...
T Consensus       198 p~~-----~i~~n~---------kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~  253 (339)
T KOG0280|consen  198 PKT-----FIWHNS---------KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG  253 (339)
T ss_pred             Ccc-----eeeecc---------eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc
Confidence            322     112111         33567899998886 578999998 5899999999777877654443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.04  E-value=5.2e-07  Score=90.44  Aligned_cols=287  Identities=11%  Similarity=0.074  Sum_probs=152.7

Q ss_pred             EEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeecc--CCcccccccccccccce
Q 015363           39 SAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS--HEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        39 ~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--h~~~~~~~~~~~~~~~v  115 (408)
                      ..++++++ ++++++-+.+++|++||..+...                        ..+.+  ..+.-+-.-....-...
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i------------------------~~ig~~g~~G~~dG~~~~a~f~~P  626 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI------------------------VQIGSTGEEGLRDGSFEDATFNRP  626 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE------------------------EEEccCCCcCCCCCchhccccCCC
Confidence            35788875 66777777788999999764321                        01100  00000000000000235


Q ss_pred             eEEEEeecCCCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCe--EeecCCceeeEEccCCCeeeccccc
Q 015363          116 NKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI--FGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..+++.++  +..|+++. ..+.|+++|+.++........ .........+..  ...-..+..++++|++..+      
T Consensus       627 ~GIavd~~--gn~LYVaDt~n~~Ir~id~~~~~V~tlag~-G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~L------  697 (1057)
T PLN02919        627 QGLAYNAK--KNLLYVADTENHALREIDFVNETVRTLAGN-GTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKV------  697 (1057)
T ss_pred             cEEEEeCC--CCEEEEEeCCCceEEEEecCCCEEEEEecc-CcccCCCCCChhhhHhhcCCCeEEEEecCCCeE------
Confidence            77888543  55555554 567899999988765443221 100000000000  0001234468888854433      


Q ss_pred             ccCccccCCCCCceeeeceeeecccccc-c--cccce----eeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCC
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNL-V--AGCRR----IYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI  263 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~--~~~~~----~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~  263 (408)
                           +++...++.|++|+ ........ .  +....    ......-.....|+++|++..|+.+  .++.|++||+.+
T Consensus       698 -----yVad~~~~~I~v~d-~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t  771 (1057)
T PLN02919        698 -----YIAMAGQHQIWEYN-ISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT  771 (1057)
T ss_pred             -----EEEECCCCeEEEEE-CCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence                 26667778888887 32211100 0  00000    0000111345679999999866555  689999999985


Q ss_pred             CCceeeEeecCC------CcccC--------CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccccc
Q 015363          264 SNQSFNIVDVKP------ANMED--------LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE  329 (408)
Q Consensus       264 ~~~~~~~~~~~~------~~~~~--------~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  329 (408)
                      ..... ...-.+      ..+..        .......++++++| .++++-..+++|++||..++...     .+.+..
T Consensus       772 g~~~~-~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~-----tiaG~G  844 (1057)
T PLN02919        772 GGSRL-LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVT-----TLAGTG  844 (1057)
T ss_pred             CcEEE-EEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEE-----EEeccC
Confidence            43211 100000      00000        11124689999999 88888888999999999877542     121110


Q ss_pred             CCCCc--cccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          330 APGTR--SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       330 ~~~~~--~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      .....  ....+.......++++++|+++++-. ++.|++||+++
T Consensus       845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            00000  00112224578899999999777764 59999999987

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.03  E-value=8.6e-08  Score=79.85  Aligned_cols=174  Identities=17%  Similarity=0.160  Sum_probs=112.7

Q ss_pred             eeEEccCCCeeecccccccCccccCC---CCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPP---GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  251 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-  251 (408)
                      -++++|+.+.|            +++   +..+.|.-|. +...++.......... .+  .+...+++++++++++++ 
T Consensus        44 yl~~~~~~~~L------------Y~v~~~~~~ggvaay~-iD~~~G~Lt~ln~~~~-~g--~~p~yvsvd~~g~~vf~An  107 (346)
T COG2706          44 YLAVNPDQRHL------------YVVNEPGEEGGVAAYR-IDPDDGRLTFLNRQTL-PG--SPPCYVSVDEDGRFVFVAN  107 (346)
T ss_pred             eEEECCCCCEE------------EEEEecCCcCcEEEEE-EcCCCCeEEEeecccc-CC--CCCeEEEECCCCCEEEEEE
Confidence            58999999887            433   2345666665 4332222111111111 22  233788999999999998 


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCC----------eEEEEEcCCCCceEEEEeC-CCeEEEEEcCCCceec
Q 015363          252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV----------ITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCD  319 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~  319 (408)
                       .-|.|.++-++..+.....+..     ..|.+.          +....+.|++ ++|++..- -.+|.+|++..+.+..
T Consensus       108 Y~~g~v~v~p~~~dG~l~~~v~~-----~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~  181 (346)
T COG2706         108 YHSGSVSVYPLQADGSLQPVVQV-----VKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTP  181 (346)
T ss_pred             ccCceEEEEEcccCCccccceee-----eecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCcccc
Confidence             6899999999865554443221     222222          7889999999 77777654 4579999999876542


Q ss_pred             ccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC--CCeEEEEECCCCCCceeeeeeccc
Q 015363          320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      .....++.             .+..+.|.|+|++++...-.  +++|.+|..+.....+..++.+..
T Consensus       182 ~~~~~v~~-------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t  235 (346)
T COG2706         182 ADPAEVKP-------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT  235 (346)
T ss_pred             ccccccCC-------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc
Confidence            22222211             25678999999999988764  499999999875455555555433

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.03  E-value=1.8e-07  Score=74.60  Aligned_cols=204  Identities=10%  Similarity=0.043  Sum_probs=125.7

Q ss_pred             cEEEEEeCCCeEEEEEcCCCcEE-EEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363          127 ALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (408)
Q Consensus       127 ~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (408)
                      .+||.|+.-|...+|...+.+.. .....+...                  +....        ..+....-++.++.|.
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~------------------v~~~~--------r~cd~~~~~~i~sndh  138 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNND------------------VTLVK--------RYCDLKFPLNIASNDH  138 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccc------------------hhhhh--------hhcccccceeeccCCc
Confidence            48999999999999999866532 222221110                  00000        0000111136667788


Q ss_pred             eeeeceeeeccccccccccceeecccccc--ceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCc
Q 015363          206 SLRLPVVVTSQETNLVAGCRRIYAHAHDY--HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT  282 (408)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  282 (408)
                      ++++.+ +......         ..-|..  .+++++++++++++++. +...|..|.+......+..+..     ....
T Consensus       139 t~k~~~-~~~~s~~---------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-----a~t~  203 (344)
T KOG4532|consen  139 TGKTMV-VSGDSNK---------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-----APTS  203 (344)
T ss_pred             ceeEEE-EecCccc---------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-----cccC
Confidence            888776 3321110         012222  37889999999999987 8899999999855443322211     1122


Q ss_pred             CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC--EEEEeC
Q 015363          283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILSRD  360 (408)
Q Consensus       283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~--~l~s~~  360 (408)
                      ..=.+.+|+... ..+|++..||++.|||+|......   ......        -..|.+.+..+.|++-|.  +|+-..
T Consensus       204 D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm---~~~sst--------rp~hnGa~R~c~Fsl~g~lDLLf~sE  271 (344)
T KOG4532|consen  204 DHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATPM---AEISST--------RPHHNGAFRVCRFSLYGLLDLLFISE  271 (344)
T ss_pred             CCceeeeeccCc-ceEEEEecCCcEEEEEecccccch---hhhccc--------CCCCCCceEEEEecCCCcceEEEEec
Confidence            333678999988 899999999999999999765321   111111        122568999999998654  455454


Q ss_pred             -CCeEEEEECCCCCCceeeeeeccc
Q 015363          361 -YMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       361 -d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                       -+.+.+-|+++ ++-.+.+...+.
T Consensus       272 hfs~~hv~D~R~-~~~~q~I~i~~d  295 (344)
T KOG4532|consen  272 HFSRVHVVDTRN-YVNHQVIVIPDD  295 (344)
T ss_pred             CcceEEEEEccc-CceeeEEecCcc
Confidence             48999999998 565555544433

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.03  E-value=1.5e-07  Score=81.67  Aligned_cols=281  Identities=12%  Similarity=0.119  Sum_probs=163.1

Q ss_pred             cceEEEEECCCCCeEEEeecCC---------------eEEEEEeCCCCCCCCc-ccccccccc-cccCCCccceeeeecc
Q 015363           36 DIISAIEFDKSGDHLATGDRGG---------------RVVLFERTDTRDNGGQ-RRDLEMMDY-SMSRHPEFRYKTEFQS   98 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg---------------~i~iw~~~~~~~~~~~-~~~~~~~~~-~~~~~p~~~~~~~~~~   98 (408)
                      ..|.-+.|+|.++||.+-++.+               .+.+||..++...-.. ....+..+- .+.++-+-.+...+-+
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~  151 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG  151 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence            4478899999999999976544               4899999887642111 111110000 0111111111111111


Q ss_pred             CCcccc---------cccccccccceeEEEEeecCCCcEEEE-----EeCCCeEEEEEcCCCcEEEEeccCCCCcccCCC
Q 015363           99 HEPEFD---------YLKSLEIEEKINKIRWCQSANSALYLL-----STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN  164 (408)
Q Consensus        99 h~~~~~---------~~~~~~~~~~v~~v~~~p~~~~~~l~~-----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  164 (408)
                      |.-.+.         ..+.+. ...|....|+|..|+..|+.     ...++++++|.+..+..+....+...       
T Consensus       152 ~sl~i~e~t~n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~-------  223 (561)
T COG5354         152 SSLYIHEITDNIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV-------  223 (561)
T ss_pred             CeEEEEecCCccccCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee-------
Confidence            110000         001111 26688899998877766665     35788999999986665544333211       


Q ss_pred             CCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC
Q 015363          165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD  244 (408)
Q Consensus       165 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  244 (408)
                              +.+.+.|.+.|+.+..+...... .-=+--....+.+++ +...+.       +.. ..-.++|..++|.|.
T Consensus       224 --------~~~qLkW~~~g~~ll~l~~t~~k-snKsyfgesnLyl~~-~~e~~i-------~V~-~~~~~pVhdf~W~p~  285 (561)
T COG5354         224 --------SGVQLKWQVLGKYLLVLVMTHTK-SNKSYFGESNLYLLR-ITERSI-------PVE-KDLKDPVHDFTWEPL  285 (561)
T ss_pred             --------cccEEEEecCCceEEEEEEEeee-cccceeccceEEEEe-eccccc-------cee-ccccccceeeeeccc
Confidence                    12257899999887544221110 000111234566666 332111       111 133578999999999


Q ss_pred             CCEEEE--e-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCCcee
Q 015363          245 GETFIS--A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALC  318 (408)
Q Consensus       245 ~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~  318 (408)
                      ++.|++  | .+..+.++|++ +.-...        +.  ...=..+.|+|.+ ++++.++-|   |.|-+||......+
T Consensus       286 S~~F~vi~g~~pa~~s~~~lr-~Nl~~~--------~P--e~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~~  353 (561)
T COG5354         286 SSRFAVISGYMPASVSVFDLR-GNLRFY--------FP--EQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFKV  353 (561)
T ss_pred             CCceeEEecccccceeecccc-cceEEe--------cC--CcccccccccCcc-cEEEEecCCccccceEEeccCCceEE
Confidence            988775  4 78999999999 332221        11  2223568999999 777776654   78999998876544


Q ss_pred             cccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-------CCCeEEEEECCC
Q 015363          319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-------DYMTLKLWDINM  371 (408)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-------~d~~v~~wd~~~  371 (408)
                      .   ..+.+.              ...-+.|+|||+++.+.       -|..|+|||+..
T Consensus       354 ~---~~~~~~--------------n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         354 A---GAFNGL--------------NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             E---EEeecC--------------CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence            1   234433              23557899999998865       247899999963

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.02  E-value=1.4e-08  Score=95.17  Aligned_cols=202  Identities=14%  Similarity=0.156  Sum_probs=138.9

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      .++|....+..+...++.++.++.+.|||......                       ....++.+..          --
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~-----------------------~~~i~~~er~----------~l  133 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSV-----------------------LSKIQSDERC----------TL  133 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCce-----------------------ehhcCCCceE----------EE
Confidence            45555555556677889999999999999876642                       1112211100          00


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      ..++-+--+.+.-++++|+.-+.|.+|+......-..+.+|        .|.++       .+.++.+|.++        
T Consensus       134 ~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GH--------eG~iF-------~i~~s~dg~~i--------  190 (967)
T KOG0974|consen  134 YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGH--------EGSIF-------SIVTSLDGRYI--------  190 (967)
T ss_pred             EeEEEEeccCcEEEEEeccccccEEEEeccccCCcceeccc--------CCceE-------EEEEccCCcEE--------
Confidence            11122211233447888999999999998833222223333        45566       78999999998        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeec
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  273 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~  273 (408)
                          ++.+.|.++++|+ +...+...     .. .-+|..++..+.|.|.  .++++ .|.+.++|+.+ ..+ ++.   
T Consensus       191 ----~s~SdDRsiRlW~-i~s~~~~~-----~~-~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~-l~~---  252 (967)
T KOG0974|consen  191 ----ASVSDDRSIRLWP-IDSREVLG-----CT-GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQ-LEV---  252 (967)
T ss_pred             ----EEEecCcceeeee-cccccccC-----cc-cccccceeEEEEeccc--eeEEeccceEEEEEecc-cce-ehh---
Confidence                9999999999999 54433222     11 3689999999999998  77777 99999999877 332 222   


Q ss_pred             CCCcccCCc-CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          274 KPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       274 ~~~~~~~~~-~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                          +.+|. ..+..++..+.. ...++++.|+.+++||+...
T Consensus       253 ----y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  253 ----YDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ----hhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhcc
Confidence                45554 458899999888 89999999999999998653

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.1e-08  Score=87.21  Aligned_cols=292  Identities=13%  Similarity=0.137  Sum_probs=184.4

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      -|.+.|+-+.-+ ..+++.+++.||.++.|.-..-.                    -.+++..+..|.            
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is--------------------GvEfVKhFraHL------------   53 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS--------------------GVEFVKHFRAHL------------   53 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCcc--------------------ceeehhhhHHHH------------
Confidence            477777777544 46789999999999999854311                    123455677777            


Q ss_pred             cceeEEEEeecCCCcEEEEEeC-CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      ..|.+++.+  .++-++.+.+. |..++++|+++-......+...-|..               +-+....|..+     
T Consensus        54 ~~I~sl~~S--~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---------------a~wv~skGd~~-----  111 (558)
T KOG0882|consen   54 GVILSLAVS--YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---------------AEWVTSKGDKI-----  111 (558)
T ss_pred             HHHHhhhcc--ccceeEeeccCcccceeEEEeeccchhhhcccccCCCc---------------eEEecCCCCee-----
Confidence            557788774  55877888676 99999999998766544444332210               11222223111     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce-ee
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS-FN  269 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-~~  269 (408)
                         ..+.++.-.++.+.++| - ..+.    .+...+..-|..+|..+.+.+.+..+++. ..|.|..|.....-+. -.
T Consensus       112 ---s~IAVs~~~sg~i~VvD-~-~~d~----~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~  182 (558)
T KOG0882|consen  112 ---SLIAVSLFKSGKIFVVD-G-FGDF----CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT  182 (558)
T ss_pred             ---eeEEeecccCCCcEEEC-C-cCCc----CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccc
Confidence               01125556677777777 1 1111    11112236688999999999999999998 7999999998731111 11


Q ss_pred             Eeec--CC----CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc-----cCCCC-----
Q 015363          270 IVDV--KP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ-----EAPGT-----  333 (408)
Q Consensus       270 ~~~~--~~----~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~-----  333 (408)
                      -+..  +.    ..+........++.|+|++ ..+++-+.|..|++++.++++..    +.+...     ..+..     
T Consensus       183 ~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklv----qeiDE~~t~~~~q~ks~y~l~  257 (558)
T KOG0882|consen  183 NLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLV----QEIDEVLTDAQYQPKSPYGLM  257 (558)
T ss_pred             cccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhh----hhhhccchhhhhccccccccc
Confidence            0111  10    0122234556899999999 88999899999999999999654    111111     00000     


Q ss_pred             ----------cccccccc-ceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCC
Q 015363          334 ----------RSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSK  394 (408)
Q Consensus       334 ----------~~~~~~h~-~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (408)
                                +.-+..|. ..-..+.|...|++|+-|+-=.|++.++.+ +.+++.+-..+..|..-.++|+
T Consensus       258 ~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q  328 (558)
T KOG0882|consen  258 HVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQ  328 (558)
T ss_pred             eeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHh
Confidence                      00011121 234567899999999999877899999998 6888888776665554444444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.98  E-value=3.7e-08  Score=82.84  Aligned_cols=80  Identities=16%  Similarity=0.208  Sum_probs=66.8

Q ss_pred             cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEE
Q 015363          230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  308 (408)
Q Consensus       230 ~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  308 (408)
                      .+|-..++.++|+||+++++++ .|..|++-..... ..+..+      .-+|...|..++.-++.  .|++++.|++|+
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-f~Iesf------clGH~eFVS~isl~~~~--~LlS~sGD~tlr  218 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-FVIESF------CLGHKEFVSTISLTDNY--LLLSGSGDKTLR  218 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-cchhhh------ccccHhheeeeeeccCc--eeeecCCCCcEE
Confidence            6888999999999999999999 8999999777622 222221      46799999999998874  699999999999


Q ss_pred             EEEcCCCcee
Q 015363          309 LIDMRQSALC  318 (408)
Q Consensus       309 iwd~~~~~~~  318 (408)
                      +||+++++.+
T Consensus       219 ~Wd~~sgk~L  228 (390)
T KOG3914|consen  219 LWDITSGKLL  228 (390)
T ss_pred             EEecccCCcc
Confidence            9999999765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=6.2e-07  Score=78.79  Aligned_cols=75  Identities=13%  Similarity=0.266  Sum_probs=51.0

Q ss_pred             cCCeEEEEEcCCCCceEEEEeC---CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363          282 TEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  358 (408)
Q Consensus       282 ~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s  358 (408)
                      ...|...+|-|.| ..+++-+.   ..++.+|.+.+.....+.++.+...              ..+.+.|+|.|++++.
T Consensus       445 ke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~--------------~~N~vfwsPkG~fvvv  509 (698)
T KOG2314|consen  445 KESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK--------------FANTVFWSPKGRFVVV  509 (698)
T ss_pred             chheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhccc--------------ccceEEEcCCCcEEEE
Confidence            4567788999999 55554433   3578889887432211222333322              3578999999999987


Q ss_pred             e---C-CCeEEEEECCC
Q 015363          359 R---D-YMTLKLWDINM  371 (408)
Q Consensus       359 ~---~-d~~v~~wd~~~  371 (408)
                      +   + .|.+.++|++.
T Consensus       510 a~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  510 AALVSRRGDLEFYDTDY  526 (698)
T ss_pred             EEecccccceEEEecch
Confidence            6   4 38999999985

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.93  E-value=2.4e-06  Score=69.29  Aligned_cols=42  Identities=17%  Similarity=0.308  Sum_probs=33.8

Q ss_pred             ceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeeccc
Q 015363          342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      ..|..|..||||..||+.. +|.|.+|++.+ -++.+....++.
T Consensus       230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs-L~~~~~W~~~eq  272 (282)
T PF15492_consen  230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPS-LRLQRSWKQDEQ  272 (282)
T ss_pred             CceEEEEECCCCCEEEEEEcCCeEEEEecCc-chhhcccchhhC
Confidence            5799999999999999996 69999999986 455555554433

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=5e-07  Score=81.47  Aligned_cols=198  Identities=11%  Similarity=0.072  Sum_probs=111.5

Q ss_pred             ceeEEEEeecCCCcE-EEEEeC---CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          114 KINKIRWCQSANSAL-YLLSTN---DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~-l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      .+....|+|+  |+. ++..+.   +..|.++|+.+++...+.....         ...       ...|+|||+.+.  
T Consensus       189 ~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g---------~~~-------~~~~SPDG~~la--  248 (419)
T PRK04043        189 LNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG---------MLV-------VSDVSKDGSKLL--  248 (419)
T ss_pred             CeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC---------cEE-------eeEECCCCCEEE--
Confidence            4567889765  664 554432   4578899999888776654322         111       357999998762  


Q ss_pred             cccccCccccCC--CCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCC--eEEEEeCCC
Q 015363          190 FGCASNDSSFPP--GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLEI  263 (408)
Q Consensus       190 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~--~i~iwd~~~  263 (408)
                               ++.  ..+..|.+++ +.....       +.+ ..+........|+|||+.|+-.  ..+  .|.+.|+..
T Consensus       249 ---------~~~~~~g~~~Iy~~d-l~~g~~-------~~L-T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~  310 (419)
T PRK04043        249 ---------LTMAPKGQPDIYLYD-TNTKTL-------TQI-TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS  310 (419)
T ss_pred             ---------EEEccCCCcEEEEEE-CCCCcE-------EEc-ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence                     222  2345566656 322211       111 2222223345799999877754  223  677778873


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---------CeEEEEEcCCCceecccccccccccCCCCc
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---------GSIRLIDMRQSALCDTHSKLFEEQEAPGTR  334 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  334 (408)
                       +...++      +..+.    ....|+|+| +.++..+..         ..|.+.|+.++..     +.+...      
T Consensus       311 -g~~~rl------t~~g~----~~~~~SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-----~~LT~~------  367 (419)
T PRK04043        311 -GSVEQV------VFHGK----NNSSVSTYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-----RRLTAN------  367 (419)
T ss_pred             -CCeEeC------ccCCC----cCceECCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-----EECCCC------
Confidence             333222      11111    124899999 666655543         3688888877753     222221      


Q ss_pred             cccccccceeEEEEEccCCCEEEEeC-C---CeEEEEECCCCCCceeeeee
Q 015363          335 SFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       335 ~~~~~h~~~i~~~~~spdg~~l~s~~-d---~~v~~wd~~~~~~~~~~~~~  381 (408)
                             .......|+|||+.|+... +   ..+.+.++  .|.....+..
T Consensus       368 -------~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l--~g~~~~~l~~  409 (419)
T PRK04043        368 -------GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL--NYNKSFLFPL  409 (419)
T ss_pred             -------CCcCCeEECCCCCEEEEEEccCCcEEEEEEec--CCCeeEEeec
Confidence                   1123478999999887652 2   34555666  4555555543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=6.8e-09  Score=90.76  Aligned_cols=217  Identities=15%  Similarity=0.135  Sum_probs=131.1

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|.+.|.+++--.+.+-+++++.|.+|++|.++.....                ..+..+.-+++.|+         
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~----------------~~tsaCQfTY~aHk---------  784 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE----------------IGTSACQFTYQAHK---------  784 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc----------------cccceeeeEhhhcc---------
Confidence            45689999998876667777999999999999998754210                01122344678888         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         .+|.++.|..+  -  -..++.|+-|.+||.--++...........      +                .+..+.++
T Consensus       785 ---k~i~~igfL~~--l--r~i~ScD~giHlWDPFigr~Laq~~dapk~------~----------------a~~~ikcl  835 (1034)
T KOG4190|consen  785 ---KPIHDIGFLAD--L--RSIASCDGGIHLWDPFIGRLLAQMEDAPKE------G----------------AGGNIKCL  835 (1034)
T ss_pred             ---Ccccceeeeec--c--ceeeeccCcceeecccccchhHhhhcCccc------C----------------CCceeEec
Confidence               78999999643  2  234567899999998766544321111100      0                01111111


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceee--ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                      .......+++-++...+|+++| .+..+-.    |....  ..+.+.-++++++.+.|+.++.+ ++|.|.+.|.+++ +
T Consensus       836 ~nv~~~iliAgcsaeSTVKl~D-aRsce~~----~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G-~  909 (1034)
T KOG4190|consen  836 ENVDRHILIAGCSAESTVKLFD-ARSCEWT----CELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNG-K  909 (1034)
T ss_pred             ccCcchheeeeccchhhheeee-cccccce----eeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCC-c
Confidence            1111111234457788899888 4332221    11111  13445678999999999999999 9999999999954 4


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEE-EEcCCC
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL-IDMRQS  315 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i-wd~~~~  315 (408)
                      .++.       .....-....++ .|.. +.|+....|.++.+ |....+
T Consensus       910 vINs-------wrpmecdllqla-apsd-q~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  910 VINS-------WRPMECDLLQLA-APSD-QALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             eecc-------CCcccchhhhhc-Cchh-HHHHhhcccceeEeeehhcCC
Confidence            3332       111111122222 2444 67777777888877 766555

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=1.7e-07  Score=84.69  Aligned_cols=248  Identities=11%  Similarity=0.112  Sum_probs=154.3

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|+..|.-+.|+.+.+.|-|...+|.|.+|-+-.+...                       ..+.....         
T Consensus        67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~-----------------------EEMiNnRn---------  114 (1189)
T KOG2041|consen   67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC-----------------------EEMINNRN---------  114 (1189)
T ss_pred             hccCcceEEEEEeccccccccccCCCceEEEEeeecccHH-----------------------HHHhhCcC---------
Confidence            3479999999999999999999999999999998776531                       11111111         


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-EEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                       ++.|.+++|  +.+|+.++..-.||.|.+=.++.++.- +.++.....                 .+.|++|.+.+   
T Consensus       115 -KSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~-----------------hv~ws~D~~~~---  171 (1189)
T KOG2041|consen  115 -KSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLA-----------------HVLWSEDLEQA---  171 (1189)
T ss_pred             -ccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccceecchhcchhecc-----------------ceeecccHHHH---
Confidence             166999999  567999999999999988877754321 111111110                 47899998876   


Q ss_pred             cccccCccccCCCCCceeeeceeeec-cccccccccceee---ccccccceEEEEe--------CCCCCEEEEe-cCCeE
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTS-QETNLVAGCRRIY---AHAHDYHINSISN--------NSDGETFISA-DDLRI  256 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~v~~i~~--------~~~~~~l~~~-~d~~i  256 (408)
                               +.+-.+|.+.+|| -.+ ........|....   .......+-.+.|        -|+...|+.+ .+|.+
T Consensus       172 ---------Lf~~ange~hlyd-nqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~  241 (1189)
T KOG2041|consen  172 ---------LFKKANGETHLYD-NQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRM  241 (1189)
T ss_pred             ---------HhhhcCCcEEEec-ccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCcee
Confidence                     6777788999988 322 1111111221111   0111122444554        3577889999 89999


Q ss_pred             EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---------eEEEEEcCCCceeccccccccc
Q 015363          257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---------SIRLIDMRQSALCDTHSKLFEE  327 (408)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~~~~  327 (408)
                      .+-.-.....+.- +       . ..-.+..+.|+++| .+||.++.+.         .|.+|..- |..    +.+++.
T Consensus       242 QiMR~eND~~Pvv-~-------d-tgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i----~gtlkv  306 (1189)
T KOG2041|consen  242 QIMRSENDPEPVV-V-------D-TGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPY-GHI----VGTLKV  306 (1189)
T ss_pred             hhhhhcCCCCCeE-E-------e-cccEeecceecCCC-cEEEEccCcccccCccccceEEEeccc-hhh----eEEEec
Confidence            8876664333322 1       1 13557889999999 8999887653         34444322 211    134443


Q ss_pred             ccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECC
Q 015363          328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN  370 (408)
Q Consensus       328 ~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~  370 (408)
                      +            ...|++++|-..|-.++.+-|+.|.+=+++
T Consensus       307 p------------g~~It~lsWEg~gLriA~AvdsfiyfanIR  337 (1189)
T KOG2041|consen  307 P------------GSCITGLSWEGTGLRIAIAVDSFIYFANIR  337 (1189)
T ss_pred             C------------CceeeeeEEcCCceEEEEEecceEEEEeec
Confidence            3            256777777766666665555555444333

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.88  E-value=1.4e-08  Score=91.79  Aligned_cols=209  Identities=17%  Similarity=0.349  Sum_probs=139.4

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      +.-.+++.++.++|.|+-+|.+++-|.. +-|++..-..                   .+.+..+..             
T Consensus        21 l~v~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~p-------------------pr~l~h~tp-------------   67 (1081)
T KOG0309|consen   21 LKVDGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTP-------------------PRWLHHITP-------------   67 (1081)
T ss_pred             EEecCcccceeeccccchhhhhhhcCeE-EEeccCCCCC-------------------ceeeeccCc-------------
Confidence            3456788999999999999999988744 6676544211                   111221221             


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       -.|-.+.|+|.+...+-++......-.+|++..                                              
T Consensus        68 -w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~----------------------------------------------  100 (1081)
T KOG0309|consen   68 -WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK----------------------------------------------  100 (1081)
T ss_pred             -chhcceecccCCCCceeEEecCcchhhhhhhhc----------------------------------------------
Confidence             237788898876655555554444445565432                                              


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCceee
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                                +.+..|.++                  +.+|...|+.+.|+|+. ..++++ .|-.+..||++.....+.
T Consensus       101 ----------ss~~aIef~------------------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y  152 (1081)
T KOG0309|consen  101 ----------SSSNAIEFV------------------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY  152 (1081)
T ss_pred             ----------CCccceEEE------------------EecCccceeccccCCCCCcceeeccccccceeeeccCCCccee
Confidence                      122222221                  37888899999999987 567777 899999999997776665


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      ..       ..-......++|+-..+..+|+ +....|++||++.+..   ++..+++|            ...|+.+.|
T Consensus       153 s~-------~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~---pl~s~K~~------------vs~vn~~~f  209 (1081)
T KOG0309|consen  153 ST-------SSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGST---PLCSLKGH------------VSSVNSIDF  209 (1081)
T ss_pred             ee-------ecccccCceeeecccCcchhhh-ccCCceEEEeccCCCc---ceEEeccc------------ceeeehHHH
Confidence            42       2223445789999877566665 5677899999998863   33455554            578888888


Q ss_pred             cc--CCCEEEEeCCCeEEEEECCC
Q 015363          350 AR--NGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       350 sp--dg~~l~s~~d~~v~~wd~~~  371 (408)
                      ..  .+..+-++.|++|++||..+
T Consensus       210 nr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  210 NRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             hhhhhhhhcccCCCCceeeecccc
Confidence            75  34444445689999999976

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.87  E-value=1.1e-05  Score=79.74  Aligned_cols=340  Identities=12%  Similarity=0.111  Sum_probs=174.7

Q ss_pred             eccceEEEEECCCCCeEEEeec---C---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccc-
Q 015363           34 EVDIISAIEFDKSGDHLATGDR---G---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL-  106 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~---d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~-  106 (408)
                      +.+.-..|+|-.||.++|+.+.   .   ..+|||+.++. .. ....+.+.....+++.|...++...+.+....+.+ 
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~-L~-stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvF  285 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE-LQ-STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVF  285 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce-EE-eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEE
Confidence            4556678999999999999875   2   57999998733 21 22234455555788999998887766533221111 


Q ss_pred             ---ccc----------ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCC
Q 015363          107 ---KSL----------EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS  173 (408)
Q Consensus       107 ---~~~----------~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  173 (408)
                         ..+          .....|..+.|+  ++++.||....|. |.+|-..+-..-.........     ...+      
T Consensus       286 fErNGLrhgeF~l~~~~~~~~v~~l~Wn--~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-----~~~~------  351 (928)
T PF04762_consen  286 FERNGLRHGEFTLRFDPEEEKVIELAWN--SDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-----SESV------  351 (928)
T ss_pred             EecCCcEeeeEecCCCCCCceeeEEEEC--CCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-----CCCC------
Confidence               001          234679999996  5577898877665 999999887643332222111     0000      


Q ss_pred             ceeeEEccCCCe-eecccc-cc--cCcc----c----cCCCCCceeeecee----eecccc--ccccccceeeccccccc
Q 015363          174 AIPKSYMANGGC-GERNFG-CA--SNDS----S----FPPGGVSSLRLPVV----VTSQET--NLVAGCRRIYAHAHDYH  235 (408)
Q Consensus       174 ~~~~~~~~~~~~-l~~~~~-~~--~~~~----~----~~~~~~~~i~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~  235 (408)
                       ..+.|+|.... +..+.. ..  ...+    .    ......+.+.+-|-    +.....  .+...+...+  .-...
T Consensus       352 -~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l--~~~~~  428 (928)
T PF04762_consen  352 -NFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL--ELPSP  428 (928)
T ss_pred             -CceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE--cCCCC
Confidence             02566665322 211110 00  0000    0    01112233333220    000000  1111122222  23467


Q ss_pred             eEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce-------eeEeecC---CCcccCCcCCeEEEEEcCCCCceEEEEeCC
Q 015363          236 INSISNNSDGETFISA-DDLRINLWNLEISNQS-------FNIVDVK---PANMEDLTEVITSAEFHPTHCNMLAYSSSK  304 (408)
Q Consensus       236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-------~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  304 (408)
                      |.+++|++++..+++- .||.|.+|........       ...+...   ..........+..+.|..+. .+++....+
T Consensus       429 v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  507 (928)
T PF04762_consen  429 VNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDD-TLLVLSDSD  507 (928)
T ss_pred             cEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCC-EEEEEEecC
Confidence            9999999999877777 9999999986532211       0000000   00111224457888998887 666655554


Q ss_pred             ---CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC-EEEEeCCCeEEEEECCCCCCceeeee
Q 015363          305 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDYMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       305 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~-~l~s~~d~~v~~wd~~~~~~~~~~~~  380 (408)
                         ..+.++++....... .+......            .+.+..+...++.. .++-..+|.+...+.......+..+.
T Consensus       508 ~~~~~i~~~~~~~~~~~~-~~~~~~~~------------~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp  574 (928)
T PF04762_consen  508 SNQSKIVLVDIDDSENSA-SVESSTEV------------DGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFP  574 (928)
T ss_pred             cccceEEEEEeccCCCce-eEEEEecc------------CceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCC
Confidence               678888874332110 00111111            13455555566555 33334578888666654322222222


Q ss_pred             ecccccceEEecCCC----eeeeeeceeeec
Q 015363          381 VHEHLRPKVMHSSKN----YFMGLDNIHTLY  407 (408)
Q Consensus       381 ~~~~~~~~~~~~~~~----~~~~~d~~~~~~  407 (408)
                      .... ...++.....    -++++++.++||
T Consensus       575 ~~c~-~~~~~~~~~~~~~~~~~GLs~~~~Ly  604 (928)
T PF04762_consen  575 QPCP-WMEVCQINGSEDKRVLFGLSSNGRLY  604 (928)
T ss_pred             CCCc-EEEEEEECCccceeEEEEECCCCEEE
Confidence            2111 1122222222    367777777776

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.85  E-value=7e-08  Score=76.55  Aligned_cols=74  Identities=18%  Similarity=0.270  Sum_probs=61.5

Q ss_pred             cceEEEEeCCCCCEE-EEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 015363          234 YHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  311 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  311 (408)
                      ..|.+++-+|..+.+ ++| +||.+-+||.+....+..       .+..|+..++.+-|+|..+..|.++++||.+.-||
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S-------~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS-------LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH-------HHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            448999999987555 456 899999999996543332       26789999999999999989999999999999999


Q ss_pred             cCC
Q 015363          312 MRQ  314 (408)
Q Consensus       312 ~~~  314 (408)
                      ..+
T Consensus       253 as~  255 (319)
T KOG4714|consen  253 AST  255 (319)
T ss_pred             CCC
Confidence            875

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.83  E-value=6.5e-08  Score=81.40  Aligned_cols=118  Identities=18%  Similarity=0.252  Sum_probs=82.4

Q ss_pred             EEEEeCCCCCEEEEe----cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363          237 NSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  312 (408)
Q Consensus       237 ~~i~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  312 (408)
                      +.+.+..+......+    +...+.+|.... ..+.        .+-+|-..++.++|+||+ ++++++..|..|++-.+
T Consensus       111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~~~--------~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~y  180 (390)
T KOG3914|consen  111 TAISFIREDTSVLVADKAGDVYSFDILSADS-GRCE--------PILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRY  180 (390)
T ss_pred             ceeeeeeccceEEEEeecCCceeeeeecccc-cCcc--------hhhhhhhhhheeeecCCC-CEEEEecCCceEEEEec
Confidence            344444444433333    455566666553 2222        257899999999999999 99999999999999776


Q ss_pred             CCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeee
Q 015363          313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      ..-..+               ..++-||..-|..++.-++ ..|++| +|++|++||+.+ |+.+.++..
T Consensus       181 pa~f~I---------------esfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s-gk~L~t~dl  233 (390)
T KOG3914|consen  181 PATFVI---------------ESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS-GKLLDTCDL  233 (390)
T ss_pred             Ccccch---------------hhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc-CCcccccch
Confidence            543222               1234567789999999865 456666 689999999998 788776654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.82  E-value=2.7e-06  Score=85.40  Aligned_cols=246  Identities=9%  Similarity=0.072  Sum_probs=135.7

Q ss_pred             ceEEEEECCCCCeEEEee-cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           37 IISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      ....|++++++..|+++. ..+.|+++|..++...     .+...+.         .-..+.+..     ......-...
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-----tlag~G~---------~g~~~~gg~-----~~~~~~ln~P  685 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVR-----TLAGNGT---------KGSDYQGGK-----KGTSQVLNSP  685 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-----EEeccCc---------ccCCCCCCh-----hhhHhhcCCC
Confidence            357889998887666654 3467898987665321     0000000         000000000     0000000224


Q ss_pred             eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (408)
                      ..++|.|. ++.++++.+.++.|++||..++...... .................-..+..++++|+++.+         
T Consensus       686 ~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~~~-G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~L---------  754 (1057)
T PLN02919        686 WDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRVFS-GDGYERNLNGSSGTSTSFAQPSGISLSPDLKEL---------  754 (1057)
T ss_pred             eEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEEEe-cCCccccCCCCccccccccCccEEEEeCCCCEE---------
Confidence            57899753 3556777778899999999887654322 111000000000000111345578999999865         


Q ss_pred             ccccCCCCCceeeeceeeecccccc-c-c-----ccceeec-------cccccceEEEEeCCCCCEEEEe-cCCeEEEEe
Q 015363          196 DSSFPPGGVSSLRLPVVVTSQETNL-V-A-----GCRRIYA-------HAHDYHINSISNNSDGETFISA-DDLRINLWN  260 (408)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~-~-~-----~~~~~~~-------~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd  260 (408)
                        +++...++.|++|| +....... . +     .....+-       ...-.....++++++|+++++- .+++|++||
T Consensus       755 --YVADs~n~~Irv~D-~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD  831 (1057)
T PLN02919        755 --YIADSESSSIRALD-LKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLD  831 (1057)
T ss_pred             --EEEECCCCeEEEEE-CCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEE
Confidence              35666778999998 44321110 0 0     0000000       0011234688999999987777 899999999


Q ss_pred             CCCCCceeeEeecCC------CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCce
Q 015363          261 LEISNQSFNIVDVKP------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL  317 (408)
Q Consensus       261 ~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  317 (408)
                      ..+ +....+...-.      ....+.......++++++| +++++-+.+++|++||+.++..
T Consensus       832 ~~t-g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        832 PAT-KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCC-CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence            983 33333321100      0011222356789999999 8888888999999999988754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.79  E-value=2.3e-06  Score=74.51  Aligned_cols=105  Identities=18%  Similarity=0.229  Sum_probs=70.0

Q ss_pred             EEEeCCCCCEEEEe------------cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe--C
Q 015363          238 SISNNSDGETFISA------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--S  303 (408)
Q Consensus       238 ~i~~~~~~~~l~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~  303 (408)
                      .+.|++.|++|..-            ....+.|+++.. . .+..       .....++|...+|.|.+ +.|++.+  .
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~-~i~V-------~~~~~~pVhdf~W~p~S-~~F~vi~g~~  296 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-R-SIPV-------EKDLKDPVHDFTWEPLS-SRFAVISGYM  296 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-c-ccce-------eccccccceeeeecccC-CceeEEeccc
Confidence            46788888877631            124567777762 2 1111       11457889999999999 5555544  5


Q ss_pred             CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-C---CeEEEEECCC
Q 015363          304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINM  371 (408)
Q Consensus       304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d---~~v~~wd~~~  371 (408)
                      +..+.++|++.. +.    ..  .++            +.=+.+.|+|.+++++.++ |   |.+-+||...
T Consensus       297 pa~~s~~~lr~N-l~----~~--~Pe------------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~  349 (561)
T COG5354         297 PASVSVFDLRGN-LR----FY--FPE------------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             ccceeecccccc-eE----Ee--cCC------------cccccccccCcccEEEEecCCccccceEEeccCC
Confidence            889999999976 22    12  221            2335678999999888752 2   8999999865

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=2.7e-06  Score=74.89  Aligned_cols=283  Identities=14%  Similarity=0.222  Sum_probs=147.4

Q ss_pred             eeccceEEEEECCCCCeEEEeec-----------CCeEEEEEeCCCCCCCCcccccccccc----cccCCCccceeeeec
Q 015363           33 QEVDIISAIEFDKSGDHLATGDR-----------GGRVVLFERTDTRDNGGQRRDLEMMDY----SMSRHPEFRYKTEFQ   97 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~~~~~~   97 (408)
                      .|. .|.-+.|||..+||+|-+.           ...+.|||+.++...-.... . ....    -.+++.+-++.+.+.
T Consensus       248 ~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~-~-~~~~~~WP~frWS~DdKy~Arm~  324 (698)
T KOG2314|consen  248 YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPV-I-KSPYLKWPIFRWSHDDKYFARMT  324 (698)
T ss_pred             cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceec-c-CCCccccceEEeccCCceeEEec
Confidence            354 3788999999999999653           25789999999865211111 0 0111    112233333333332


Q ss_pred             cCC------cccccc--cccccccceeEEEEeecCCCcEEEEEeC-----CCeEEEEEcCCCcEEEEeccCCCCcccCCC
Q 015363           98 SHE------PEFDYL--KSLEIEEKINKIRWCQSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGN  164 (408)
Q Consensus        98 ~h~------~~~~~~--~~~~~~~~v~~v~~~p~~~~~~l~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  164 (408)
                      +..      +.|..+  +++.. +.|....|+|.  +.+||.-..     -..+.+..+-+++.++......-       
T Consensus       325 ~~sisIyEtpsf~lld~Kslki-~gIr~FswsP~--~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV-------  394 (698)
T KOG2314|consen  325 GNSISIYETPSFMLLDKKSLKI-SGIRDFSWSPT--SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV-------  394 (698)
T ss_pred             cceEEEEecCceeeecccccCC-ccccCcccCCC--cceEEEEcccccCCcceEEEEecCccceeeeccceee-------
Confidence            211      001000  11111 45677777765  445554321     11344444444443333222110       


Q ss_pred             CCeEeecCCceeeEEccCCCeeecc-cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC
Q 015363          165 GPIFGSHVSAIPKSYMANGGCGERN-FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS  243 (408)
Q Consensus       165 ~~v~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  243 (408)
                              ....+-|-.+|.+|..- ..++..   -..+.-..+.++. +...+.....       ..-...|...+|-|
T Consensus       395 --------sDckLhWQk~gdyLcvkvdR~tK~---~~~g~f~n~eIfr-ireKdIpve~-------velke~vi~FaWEP  455 (698)
T KOG2314|consen  395 --------SDCKLHWQKSGDYLCVKVDRHTKS---KVKGQFSNLEIFR-IREKDIPVEV-------VELKESVIAFAWEP  455 (698)
T ss_pred             --------eccEEEeccCCcEEEEEEEeeccc---cccceEeeEEEEE-eeccCCCcee-------eecchheeeeeecc
Confidence                    11145666777765221 000000   0122223344444 3222221111       12235688899999


Q ss_pred             CCCEEEE--e--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe---CCCeEEEEEcCCCc
Q 015363          244 DGETFIS--A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSA  316 (408)
Q Consensus       244 ~~~~l~~--~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~  316 (408)
                      .|+.+++  |  ...++.+|.+++......++.    .+.  ....+.+.|+|.| ++++.+.   ..|.+.++|+....
T Consensus       456 ~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk----~~d--k~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~  528 (698)
T KOG2314|consen  456 HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK----ELD--KKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYAD  528 (698)
T ss_pred             CCCeEEEEEccccccceeEEEeecCCCchhhhh----hhc--ccccceEEEcCCC-cEEEEEEecccccceEEEecchhh
Confidence            9998875  4  467889998884333222211    122  2446789999999 8777664   46889999987532


Q ss_pred             eecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-------CCeEEEEECC
Q 015363          317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-------YMTLKLWDIN  370 (408)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-------d~~v~~wd~~  370 (408)
                      ...   .....|             ...+.+-|.|.|+|+++++       |..-+||++.
T Consensus       529 ~k~---~~~~eh-------------~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  529 LKD---TASPEH-------------FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             hhh---ccCccc-------------cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            210   112222             3467899999999999873       2445677764

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.79  E-value=4.9e-07  Score=74.75  Aligned_cols=245  Identities=12%  Similarity=0.146  Sum_probs=142.8

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEe-CCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFER-TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      .+|.+.|++...-|...-+++.+.|.+++||-- +.++-                 .|+..       |.          
T Consensus        21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~-----------------wpsI~-------~~----------   66 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY-----------------WPSIY-------HY----------   66 (404)
T ss_pred             cCchhhhhhheeccCCCCeEEccccceeeeEEecccccc-----------------Cchhh-------hh----------
Confidence            367888888888888777999999999999963 33321                 01100       11          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEe-ccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF-DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ...+++++.+.+.  ...|+++-..|++.-+.+...-..... .....     ..+.+.       ++.|+-..+.+   
T Consensus        67 mP~~~~~~~y~~e--~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~-----h~~~v~-------~~if~~~~e~V---  129 (404)
T KOG1409|consen   67 MPSPCSAMEYVSE--SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLA-----HQARVS-------AIVFSLTHEWV---  129 (404)
T ss_pred             CCCCceEeeeecc--ceEEEEEEecceEEEEEhhhhhhhcchhhhhhh-----hhccee-------eEEecCCceeE---
Confidence            1166888888643  567888888999888876532111110 00000     011122       34444444443   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC--CEEEEe-cCCeEEEEeCCCCCc
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                               ++.+.|..+. |. .......          .+| ....+.+..++-  .+...| ..|.|..-.+.. ..
T Consensus       130 ---------~s~~~dk~~~-~h-c~e~~~~----------lg~-Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~-~~  186 (404)
T KOG1409|consen  130 ---------LSTGKDKQFA-WH-CTESGNR----------LGG-YNFETPASALQFDALYAFVGDHSGQITMLKLEQ-NG  186 (404)
T ss_pred             ---------EEeccccceE-EE-eeccCCc----------ccc-eEeeccCCCCceeeEEEEecccccceEEEEEee-cC
Confidence                     5555555443 11 1110000          000 001111111111  133344 456665555542 21


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      +..+     .++.+|...+++++|.|.. .+|.+|..|..+.+||+-.++-..   ..+.            +|...|..
T Consensus       187 ~~~i-----~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~---~el~------------gh~~kV~~  245 (404)
T KOG1409|consen  187 CQLI-----TTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTA---YELQ------------GHNDKVQA  245 (404)
T ss_pred             CceE-----EEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCccee---eeec------------cchhhhhh
Confidence            1111     1368899999999999998 999999999999999997654321   3333            44577888


Q ss_pred             EEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          347 IKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       347 ~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      +...+--+.|.+++ ||.|.+||.+.
T Consensus       246 l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  246 LSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhhheeeeeccCCCeEEEEeccc
Confidence            88777778888875 79999999986

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=4.5e-06  Score=73.60  Aligned_cols=202  Identities=13%  Similarity=0.178  Sum_probs=121.2

Q ss_pred             eeccceEEEEECCCCC--eEEE-----eecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccc
Q 015363           33 QEVDIISAIEFDKSGD--HLAT-----GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY  105 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~--~l~s-----g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  105 (408)
                      -|...|+.+.+||.+.  .+|+     ++.-+.|+||........    ..             .....=|+.       
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~----~~-------------~a~ksFFka-------  218 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH----QP-------------VANKSFFKA-------  218 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc----ch-------------hhhcccccc-------
Confidence            3678899999999743  5554     355678999987632210    00             000011121       


Q ss_pred             ccccccccceeEEEEeecCCCcEEEEEe--CC---------CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCc
Q 015363          106 LKSLEIEEKINKIRWCQSANSALYLLST--ND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA  174 (408)
Q Consensus       106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~--~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  174 (408)
                             + =..+.|.+-..+ +|+.++  -|         .++++.+++...+...+..         .|+|.      
T Consensus       219 -------d-kvqm~WN~~gt~-LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k---------~GPVh------  274 (566)
T KOG2315|consen  219 -------D-KVQMKWNKLGTA-LLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK---------EGPVH------  274 (566)
T ss_pred             -------c-eeEEEeccCCce-EEEEEEEeecCCCccccccceEEEEEecCceEEEecCC---------CCCce------
Confidence                   1 235678655333 333332  23         3577777773333322222         45566      


Q ss_pred             eeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe---
Q 015363          175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---  251 (408)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---  251 (408)
                       ++.|+|+++....          +.|-.-..+.++| ++.       .++.   .-..++=+++-|+|.|++++.+   
T Consensus       275 -dv~W~~s~~EF~V----------vyGfMPAkvtifn-lr~-------~~v~---df~egpRN~~~fnp~g~ii~lAGFG  332 (566)
T KOG2315|consen  275 -DVTWSPSGREFAV----------VYGFMPAKVTIFN-LRG-------KPVF---DFPEGPRNTAFFNPHGNIILLAGFG  332 (566)
T ss_pred             -EEEECCCCCEEEE----------EEecccceEEEEc-CCC-------CEeE---eCCCCCccceEECCCCCEEEEeecC
Confidence             7999999987644          3345556777777 221       2222   2233556788999999998864   


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC------CCeEEEEEcCCC
Q 015363          252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDMRQS  315 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~  315 (408)
                       -.|.|.+||+.+ .+++..       +..  ...+-..|+||| ++|++++.      |..++||++...
T Consensus       333 NL~G~mEvwDv~n-~K~i~~-------~~a--~~tt~~eW~PdG-e~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  333 NLPGDMEVWDVPN-RKLIAK-------FKA--ANTTVFEWSPDG-EYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             CCCCceEEEeccc-hhhccc-------ccc--CCceEEEEcCCC-cEEEEEeccccEEecCCeEEEEecCc
Confidence             379999999995 444322       222  223568999999 88888865      678999998644

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.73  E-value=4.6e-08  Score=80.65  Aligned_cols=131  Identities=14%  Similarity=0.158  Sum_probs=94.7

Q ss_pred             ccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC----ceeeEeecCCCcccCCcCCeEEEEEcC-CCCceEEEEeCCCe
Q 015363          233 DYHINSISNNSDGETFISA-DDLRINLWNLEISN----QSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGS  306 (408)
Q Consensus       233 ~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~  306 (408)
                      ...|.++.|...++++..| .+|.|..+|++...    .+..        .--|...|+++..-. ++ +.|++.+.+|+
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~--------rlyh~Ssvtslq~Lq~s~-q~LmaS~M~gk  322 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ--------RLYHDSSVTSLQILQFSQ-QKLMASDMTGK  322 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE--------EEEcCcchhhhhhhcccc-ceEeeccCcCc
Confidence            4568888899889999999 99999999998652    2222        223788899988776 55 78888899999


Q ss_pred             EEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeeccc
Q 015363          307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      |++||+|.-+. ...+.++++|-+.          ....-+...+....++++ +|...+||.++. +.++.+++-...
T Consensus       323 ikLyD~R~~K~-~~~V~qYeGHvN~----------~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~s  389 (425)
T KOG2695|consen  323 IKLYDLRATKC-KKSVMQYEGHVNL----------SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPYS  389 (425)
T ss_pred             eeEeeehhhhc-ccceeeeeccccc----------ccccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCCc
Confidence            99999997643 2345777887321          122223445555666665 579999999997 788888766544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.72  E-value=2.7e-07  Score=73.31  Aligned_cols=73  Identities=23%  Similarity=0.392  Sum_probs=60.0

Q ss_pred             CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc-CCCEEEEeC-C
Q 015363          284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-Y  361 (408)
Q Consensus       284 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-dg~~l~s~~-d  361 (408)
                      .|++++-+|...+++++|+.||.+.+||.+...   .|...+..|            ...|+.+-|+| ++..|++++ |
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ah------------k~~i~eV~FHpk~p~~Lft~sed  245 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---MPVSLLKAH------------KAEIWEVHFHPKNPEHLFTCSED  245 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEccccc---chHHHHHHh------------hhhhhheeccCCCchheeEecCC
Confidence            389999999887888999999999999999763   334555555            57899999999 677888875 6


Q ss_pred             CeEEEEECCC
Q 015363          362 MTLKLWDINM  371 (408)
Q Consensus       362 ~~v~~wd~~~  371 (408)
                      |.+..||..+
T Consensus       246 Gslw~wdas~  255 (319)
T KOG4714|consen  246 GSLWHWDAST  255 (319)
T ss_pred             CcEEEEcCCC
Confidence            9999999974

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.72  E-value=3.6e-08  Score=56.19  Aligned_cols=33  Identities=21%  Similarity=0.450  Sum_probs=31.1

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEE
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE   63 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~   63 (408)
                      ..+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus         7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=7.7e-08  Score=84.37  Aligned_cols=172  Identities=17%  Similarity=0.205  Sum_probs=115.7

Q ss_pred             ecccccccCccccCCCCCceeeeceeeec-cccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTS-QETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN  265 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~  265 (408)
                      +.+..-.+...+++++.|++|++|. ++. .+......|..++ ..|..+|.++.|-.+-++++++ |+.|++||.-.+.
T Consensus       739 Rai~AidNENSFiSASkDKTVKLWS-ik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr  815 (1034)
T KOG4190|consen  739 RAIAAIDNENSFISASKDKTVKLWS-IKPEGDEIGTSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGR  815 (1034)
T ss_pred             HHHHhcccccceeeccCCceEEEEE-eccccCccccceeeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccc
Confidence            3344444556679999999999999 554 5555666777776 8999999999999888887765 5779999987444


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCC-CCceEEEE-eCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPT-HCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                      ...+..+      ....+.+..+..-|+ ...++.+| +...+|+++|.+.....    ..++.-..+.+       ...
T Consensus       816 ~Laq~~d------apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~----~E~kVcna~~P-------na~  878 (1034)
T KOG4190|consen  816 LLAQMED------APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT----CELKVCNAPGP-------NAL  878 (1034)
T ss_pred             hhHhhhc------CcccCCCceeEecccCcchheeeeccchhhheeeecccccce----eeEEeccCCCC-------chh
Confidence            3332211      111222333333333 21444444 67899999999987543    22222111111       256


Q ss_pred             eEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeee
Q 015363          344 ISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       344 i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~  379 (408)
                      +.+++..|.|++|+++ +.|+|.+-|.++ |+.+..+
T Consensus       879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINsw  914 (1034)
T KOG4190|consen  879 TRAIAVADKGNKLAAALSNGCIAILDARN-GKVINSW  914 (1034)
T ss_pred             eeEEEeccCcchhhHHhcCCcEEEEecCC-CceeccC
Confidence            8899999999999999 789999999998 6765544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.67  E-value=5.8e-07  Score=81.70  Aligned_cols=254  Identities=10%  Similarity=0.126  Sum_probs=147.0

Q ss_pred             eEEEEECCC--CC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           38 ISAIEFDKS--GD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        38 V~~~~~s~~--~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      |-.++|+|.  .. .+++-+.. .-.+|++.....                    -...-.+.+|.            ..
T Consensus        70 vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss~--------------------~aIef~lhghs------------ra  116 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSSS--------------------NAIEFVLHGHS------------RA  116 (1081)
T ss_pred             hcceecccCCCCceeEEecCcc-hhhhhhhhcCCc--------------------cceEEEEecCc------------cc
Confidence            667788875  23 44544444 455899765432                    11223467787            78


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      |+++.|.|... ..+++++-|-.+..||+++...-.-.....+              .....+.|+-....+        
T Consensus       117 itd~n~~~q~p-dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~--------------s~asqVkwnyk~p~v--------  173 (1081)
T KOG0309|consen  117 ITDINFNPQHP-DVLATCSVDTYVHAWDMRSPHRPFYSTSSWR--------------SAASQVKWNYKDPNV--------  173 (1081)
T ss_pred             eeccccCCCCC-cceeeccccccceeeeccCCCcceeeeeccc--------------ccCceeeecccCcch--------
Confidence            99999998644 4899999999999999987643211110000              011145665444433        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                          .+.+..+.|.+|| .+..     ..++.. +.+|...|+.++|+.-- ..+.++ .|++|+.||........+.  
T Consensus       174 ----lasshg~~i~vwd-~r~g-----s~pl~s-~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~--  240 (1081)
T KOG0309|consen  174 ----LASSHGNDIFVWD-LRKG-----STPLCS-LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR--  240 (1081)
T ss_pred             ----hhhccCCceEEEe-ccCC-----CcceEE-ecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce--
Confidence                6667788899999 4332     223333 26677888888887543 334455 8999999999855443321  


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEE-eCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                           ......+|..-++-|-|.-++.-- -.+..+.+++.+....      .......+.+...|.||...|....|-.
T Consensus       241 -----~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~------e~n~~~~~~pVh~F~GH~D~V~eFlWR~  309 (1081)
T KOG0309|consen  241 -----TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDL------EWNVFDLNTPVHTFVGHDDVVLEFLWRK  309 (1081)
T ss_pred             -----eccccCcceeccccccCceeEeccccCCeeeeeccccchhh------hhccccCCcceeeecCcchHHHHHhhhh
Confidence                 222356677777888763332211 1233455555443321      1111111223334555566676655543


Q ss_pred             --------C--CCEEEEeC-CCeEEEEECCC
Q 015363          352 --------N--GRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       352 --------d--g~~l~s~~-d~~v~~wd~~~  371 (408)
                              |  .-.|++=+ |..+++|-+.+
T Consensus       310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cccccCCCCccceeEEEeecCCceEeeeccH
Confidence                    2  22577754 89999999865

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.66  E-value=9.2e-05  Score=62.31  Aligned_cols=225  Identities=13%  Similarity=0.067  Sum_probs=129.3

Q ss_pred             EEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEE
Q 015363           40 AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI  118 (408)
Q Consensus        40 ~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v  118 (408)
                      ++.|.+ ++.++++--..+.|..|+..++...                        .+..              .....+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~------------------------~~~~--------------~~~~G~   45 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE------------------------VIDL--------------PGPNGM   45 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE------------------------EEES--------------SSEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE------------------------EEec--------------CCCceE
Confidence            567888 6777777778899999998776421                        1111              125667


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363          119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (408)
Q Consensus       119 ~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (408)
                      ++.. +++ .++.+..++. .++|..+++...........     ....     .+..+++.++|...            
T Consensus        46 ~~~~-~~g-~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~-----~~~~-----~~ND~~vd~~G~ly------------  100 (246)
T PF08450_consen   46 AFDR-PDG-RLYVADSGGI-AVVDPDTGKVTVLADLPDGG-----VPFN-----RPNDVAVDPDGNLY------------  100 (246)
T ss_dssp             EEEC-TTS-EEEEEETTCE-EEEETTTTEEEEEEEEETTC-----SCTE-----EEEEEEE-TTS-EE------------
T ss_pred             EEEc-cCC-EEEEEEcCce-EEEecCCCcEEEEeeccCCC-----cccC-----CCceEEEcCCCCEE------------
Confidence            7752 334 5666666554 55599998776665552111     0001     12257777888754            


Q ss_pred             cCCCCC--------ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCc-e
Q 015363          199 FPPGGV--------SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQ-S  267 (408)
Q Consensus       199 ~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~-~  267 (408)
                      ++....        +.|..++   .. .    +. ... ...-...+.|+|+|+++.|..+  ..+.|..|++..... .
T Consensus       101 ~t~~~~~~~~~~~~g~v~~~~---~~-~----~~-~~~-~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~  170 (246)
T PF08450_consen  101 VTDSGGGGASGIDPGSVYRID---PD-G----KV-TVV-ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL  170 (246)
T ss_dssp             EEEECCBCTTCGGSEEEEEEE---TT-S----EE-EEE-EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE
T ss_pred             EEecCCCccccccccceEEEC---CC-C----eE-EEE-ecCcccccceEECCcchheeecccccceeEEEeccccccce
Confidence            221111        3444433   11 1    11 111 1122457899999999988765  688899999874443 1


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      .....+  ..+....+..-.+++..+| ++.++....+.|.++|.+ ++.+    ..+....            ..++++
T Consensus       171 ~~~~~~--~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~~~----~~i~~p~------------~~~t~~  230 (246)
T PF08450_consen  171 SNRRVF--IDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GKLL----REIELPV------------PRPTNC  230 (246)
T ss_dssp             EEEEEE--EE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEE----EEEE-SS------------SSEEEE
T ss_pred             eeeeeE--EEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-ccEE----EEEcCCC------------CCEEEE
Confidence            111000  0122222346789999999 888887789999999988 6544    3333331            358899


Q ss_pred             EEc-cCCCEEE
Q 015363          348 KFA-RNGRHIL  357 (408)
Q Consensus       348 ~~s-pdg~~l~  357 (408)
                      +|. |+.+.|+
T Consensus       231 ~fgg~~~~~L~  241 (246)
T PF08450_consen  231 AFGGPDGKTLY  241 (246)
T ss_dssp             EEESTTSSEEE
T ss_pred             EEECCCCCEEE
Confidence            994 6655554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.65  E-value=1.8e-05  Score=71.26  Aligned_cols=132  Identities=12%  Similarity=0.068  Sum_probs=79.0

Q ss_pred             CCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccc
Q 015363          245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK  323 (408)
Q Consensus       245 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  323 (408)
                      +..+..+ .++.+..||.++++..... +     ...    ...+..  .+ ..++.++.||.|..+|..+++.+.+. .
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~-~-----~~~----~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~~~W~~-~  306 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKR-D-----ASS----YQGPAV--DD-NRLYVTDADGVVVALDRRSGSELWKN-D  306 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEee-c-----cCC----ccCceE--eC-CEEEEECCCCeEEEEECCCCcEEEcc-c
Confidence            3455555 8899999999865544332 0     111    112222  34 46777788999999999988654210 0


Q ss_pred             ccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeec
Q 015363          324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDN  402 (408)
Q Consensus       324 ~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  402 (408)
                      .+...              .......  .+..|++++ +|.|.++|.++ ++.+..++.+.........+.++.++...+
T Consensus       307 ~~~~~--------------~~ssp~i--~g~~l~~~~~~G~l~~~d~~t-G~~~~~~~~~~~~~~~sp~~~~~~l~v~~~  369 (377)
T TIGR03300       307 ELKYR--------------QLTAPAV--VGGYLVVGDFEGYLHWLSRED-GSFVARLKTDGSGIASPPVVVGDGLLVQTR  369 (377)
T ss_pred             cccCC--------------ccccCEE--ECCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCccccCCEEECCEEEEEeC
Confidence            11110              1111112  355677664 69999999987 788888887664333333456677776666


Q ss_pred             eeeec
Q 015363          403 IHTLY  407 (408)
Q Consensus       403 ~~~~~  407 (408)
                      ...||
T Consensus       370 dG~l~  374 (377)
T TIGR03300       370 DGDLY  374 (377)
T ss_pred             CceEE
Confidence            66665

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.64  E-value=1e-05  Score=73.16  Aligned_cols=193  Identities=8%  Similarity=0.112  Sum_probs=107.8

Q ss_pred             cceEEEEECCCCCe-EEEeecC---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           36 DIISAIEFDKSGDH-LATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        36 ~~V~~~~~s~~~~~-l~sg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      +.+....|+|||+. ++..+.+   ..|.++|+.+++..                     .+.   ...           
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------------------~lt---~~~-----------  232 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------------------KIA---SSQ-----------  232 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---------------------EEe---cCC-----------
Confidence            46778999999984 6654443   46888888776531                     111   112           


Q ss_pred             ccceeEEEEeecCCCcEEEEE-eCC--CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          112 EEKINKIRWCQSANSALYLLS-TND--KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~-~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                       +.+....|+|+  |+.++.. +.+  ..|.++++.+++..++.......                ....|+|||+.+  
T Consensus       233 -g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d----------------~~p~~SPDG~~I--  291 (419)
T PRK04043        233 -GMLVVSDVSKD--GSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGID----------------VNGNFVEDDKRI--  291 (419)
T ss_pred             -CcEEeeEECCC--CCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCcc----------------CccEECCCCCEE--
Confidence             33556789755  7666554 333  46777788888765543332110                135799999877  


Q ss_pred             ccccccCccccCCCCCc--eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC--------CeE
Q 015363          189 NFGCASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD--------LRI  256 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d--------~~i  256 (408)
                               +++....+  .|.+.+ +...      ...+....+.  .  ...|+|+|+.++..  ..        ..|
T Consensus       292 ---------~F~Sdr~g~~~Iy~~d-l~~g------~~~rlt~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I  351 (419)
T PRK04043        292 ---------VFVSDRLGYPNIFMKK-LNSG------SVEQVVFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNL  351 (419)
T ss_pred             ---------EEEECCCCCceEEEEE-CCCC------CeEeCccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEE
Confidence                     24433344  344444 2221      1111111111  1  24899999988764  22        367


Q ss_pred             EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC-C--eEEEEEcCCC
Q 015363          257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G--SIRLIDMRQS  315 (408)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g--~i~iwd~~~~  315 (408)
                      .+.|+..+ ....        +... .......|+||| +.++..+.+ +  .+.+.++...
T Consensus       352 ~v~d~~~g-~~~~--------LT~~-~~~~~p~~SPDG-~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        352 YLISTNSD-YIRR--------LTAN-GVNQFPRFSSDG-GSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEEECCCC-CeEE--------CCCC-CCcCCeEECCCC-CEEEEEEccCCcEEEEEEecCCC
Confidence            88888743 3322        2221 122358999999 666555442 2  3566666544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.60  E-value=2.4e-07  Score=91.92  Aligned_cols=159  Identities=14%  Similarity=0.164  Sum_probs=112.5

Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                      .++....+.++|+.||.+++|.  +....     .+..+.......|+.+.|+.+|+.+..+ .||.+.+|... .+ ++
T Consensus      2215 ~sHp~~~~Yltgs~dgsv~~~~--w~~~~-----~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk-~~ 2285 (2439)
T KOG1064|consen 2215 TSHPSDPYYLTGSQDGSVRMFE--WGHGQ-----QVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK-PY 2285 (2439)
T ss_pred             cCCCCCceEEecCCCceEEEEe--ccCCC-----eEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc-ce
Confidence            3344444559999999999998  33221     1111122333788999999999999999 89999999998 33 22


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC---CCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      .       +...|........|--   .++++++.   ++.+.+||..-.... .  ..-.            .|.+.++
T Consensus      2286 ~-------s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~-s--~v~~------------~H~~gaT 2340 (2439)
T KOG1064|consen 2286 T-------SWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMN-S--LVHT------------CHDGGAT 2340 (2439)
T ss_pred             e-------ccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccc-c--eeee------------ecCCCce
Confidence            2       2577888888888864   35666543   688999997643211 0  1113            3457899


Q ss_pred             EEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecc
Q 015363          346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       346 ~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                      ++++-|.-+.|++|+ +|.|++||++. .++.++++.-.
T Consensus      2341 ~l~~~P~~qllisggr~G~v~l~D~rq-rql~h~~~~~~ 2378 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQ-RQLRHTFQALD 2378 (2439)
T ss_pred             EEEEcCcceEEEecCCcCcEEEeehHH-HHHHHHhhhhh
Confidence            999999999999997 69999999996 57777776633

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.56  E-value=1.7e-05  Score=64.47  Aligned_cols=44  Identities=20%  Similarity=0.301  Sum_probs=35.6

Q ss_pred             CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccccc
Q 015363          281 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE  329 (408)
Q Consensus       281 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  329 (408)
                      ....|..|..+||| .+||+...+|.|.+|++.+-...    +.+...+
T Consensus       228 ~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~~----~~W~~~e  271 (282)
T PF15492_consen  228 EQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRLQ----RSWKQDE  271 (282)
T ss_pred             CCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchhh----cccchhh
Confidence            35679999999999 99999999999999999876543    4444443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.56  E-value=2.7e-07  Score=52.49  Aligned_cols=37  Identities=27%  Similarity=0.628  Sum_probs=33.0

Q ss_pred             eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEE
Q 015363           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWK  142 (408)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd  142 (408)
                      ++..+++|.            +.|++++|+|+  +.+|++++.|++|++||
T Consensus         3 ~~~~~~~h~------------~~i~~i~~~~~--~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHS------------SSINSIAWSPD--GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSS------------SSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCC------------CcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence            466789998            78999999866  77999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=4e-05  Score=71.38  Aligned_cols=234  Identities=16%  Similarity=0.213  Sum_probs=137.9

Q ss_pred             cccceeeecccCcCcccceeecc-ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363           14 PLEWKFSQVFGERTAGEEVQEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (408)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   92 (408)
                      ...|+-=+.|.....+....-.+ .|+|  |++.+..+|.|+.+|.|.+.+..-                        ..
T Consensus         3 l~qWrrF~lFq~~~i~~~~~~~G~~isc--~~s~~~~vvigt~~G~V~~Ln~s~------------------------~~   56 (933)
T KOG2114|consen    3 LKQWRRFSLFQWKEIPSLENFVGNAISC--CSSSTGSVVIGTADGRVVILNSSF------------------------QL   56 (933)
T ss_pred             hhhcceeeeeeeeecCCcccCCCCceeE--EcCCCceEEEeeccccEEEecccc------------------------ee
Confidence            34677666666544322111122 4544  567888899999999998888432                        23


Q ss_pred             eeeeccCCcccccccccccccc-eeEEEEeecCCC-cEEEEEeCCC-----eEEEEEcCCC------cEE---EEeccCC
Q 015363           93 KTEFQSHEPEFDYLKSLEIEEK-INKIRWCQSANS-ALYLLSTNDK-----TIKLWKVQEK------KVK---KVFDWNV  156 (408)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~-v~~v~~~p~~~~-~~l~~~~~d~-----~i~vwd~~~~------~~~---~~~~~~~  156 (408)
                      ...|+++.            .. |..+-.   -++ .+|++.+.|+     .+++|+++.-      ++.   .......
T Consensus        57 ~~~fqa~~------------~siv~~L~~---~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~n  121 (933)
T KOG2114|consen   57 IRGFQAYE------------QSIVQFLYI---LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKN  121 (933)
T ss_pred             eehheecc------------hhhhhHhhc---ccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCC
Confidence            45677776            44 333332   223 4666666554     5999998732      222   1111111


Q ss_pred             CCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccce
Q 015363          157 HPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI  236 (408)
Q Consensus       157 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  236 (408)
                      . ..   ..++.       .++.+.+-+.+            +.|-.+|.|..+.    .+.......+..+......+|
T Consensus       122 p-~~---~~p~s-------~l~Vs~~l~~I------------v~Gf~nG~V~~~~----GDi~RDrgsr~~~~~~~~~pI  174 (933)
T KOG2114|consen  122 P-TN---PSPAS-------SLAVSEDLKTI------------VCGFTNGLVICYK----GDILRDRGSRQDYSHRGKEPI  174 (933)
T ss_pred             C-CC---CCcce-------EEEEEccccEE------------EEEecCcEEEEEc----CcchhccccceeeeccCCCCc
Confidence            1 00   11111       46666666666            8888899888754    222111111222234456789


Q ss_pred             EEEEeCCCCCE-EEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          237 NSISNNSDGET-FISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       237 ~~i~~~~~~~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                      +.+++..++.. ++++....|.+|.+........+       +..|...+.|..+++.. ..|++++ +..+.+||....
T Consensus       175 TgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~-------ld~~G~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  175 TGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKV-------LDNNGISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGR  245 (933)
T ss_pred             eeeEEecCCceeEEEEecceeEEEEecCCCcceee-------eccCCccceeeecCCCC-ccEEEec-CceEEEEcCCCc
Confidence            99999988876 44446678999999833312322       56778888999998876 4344443 457999999876


Q ss_pred             ceecccccccc-cc
Q 015363          316 ALCDTHSKLFE-EQ  328 (408)
Q Consensus       316 ~~~~~~~~~~~-~~  328 (408)
                      +.|    ..+. ++
T Consensus       246 ~~c----faf~~g~  255 (933)
T KOG2114|consen  246 GPC----FAFEVGE  255 (933)
T ss_pred             cee----eeecCCC
Confidence            555    5555 44

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.54  E-value=1.9e-05  Score=68.52  Aligned_cols=120  Identities=16%  Similarity=0.253  Sum_probs=91.5

Q ss_pred             cccccceEEEEeCCCCCEEEEe-cCC-eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeE
Q 015363          230 HAHDYHINSISNNSDGETFISA-DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  307 (408)
Q Consensus       230 ~~~~~~v~~i~~~~~~~~l~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  307 (408)
                      .++...|+-..+.-+++-++.| .|| .+-+||.+++. ...        +...-+.|.++..+|+| ..++.+.....|
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr--------~e~~lg~I~av~vs~dG-K~~vvaNdr~el  425 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKR--------IEKDLGNIEAVKVSPDG-KKVVVANDRFEL  425 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEE--------eeCCccceEEEEEcCCC-cEEEEEcCceEE
Confidence            4556678877787777788888 777 99999999443 222        34456779999999999 888888888999


Q ss_pred             EEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe---CC--CeEEEEECCCCCCce
Q 015363          308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY--MTLKLWDINMDSGPV  376 (408)
Q Consensus       308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~---~d--~~v~~wd~~~~~~~~  376 (408)
                      .+.|+.++..     +.....+           -+-|+..+|||++++||-+   +.  ..|+++|+.. ++..
T Consensus       426 ~vididngnv-----~~idkS~-----------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy  482 (668)
T COG4946         426 WVIDIDNGNV-----RLIDKSE-----------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIY  482 (668)
T ss_pred             EEEEecCCCe-----eEecccc-----------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEE
Confidence            9999999865     3333222           2579999999999999987   22  7899999986 4443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.50  E-value=0.00021  Score=60.10  Aligned_cols=228  Identities=12%  Similarity=0.107  Sum_probs=130.4

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCC-eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDK-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      .+...++.+|. ....++.+-+-| ...+||..+++....+.......       .+.      --.|++||+.|.+..+
T Consensus         5 ~RgH~~a~~p~-~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH-------FyG------Hg~fs~dG~~LytTEn   70 (305)
T PF07433_consen    5 ARGHGVAAHPT-RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH-------FYG------HGVFSPDGRLLYTTEN   70 (305)
T ss_pred             ccccceeeCCC-CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE-------Eec------CEEEcCCCCEEEEecc
Confidence            34455777663 245677777666 46789999998877665432221       110      3579999998833222


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEec--------CCeEEEEeCCC
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD--------DLRINLWNLEI  263 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--------d~~i~iwd~~~  263 (408)
                             =.....|.|-+|| +...     ...+.. ...|.-....+.+.|||+.|+.+.        .|+-++ ++.+
T Consensus        71 -------d~~~g~G~IgVyd-~~~~-----~~ri~E-~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~t  135 (305)
T PF07433_consen   71 -------DYETGRGVIGVYD-AARG-----YRRIGE-FPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDT  135 (305)
T ss_pred             -------ccCCCcEEEEEEE-CcCC-----cEEEeE-ecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-Chhh
Confidence                   1135568999999 4411     111122 245555567788999998887652        133332 3332


Q ss_pred             CCceeeEeecCC------Ccc--cCCcCCeEEEEEcCCCCceEEEEeCCC-------eEEEEEcCCCceecccccccccc
Q 015363          264 SNQSFNIVDVKP------ANM--EDLTEVITSAEFHPTHCNMLAYSSSKG-------SIRLIDMRQSALCDTHSKLFEEQ  328 (408)
Q Consensus       264 ~~~~~~~~~~~~------~~~--~~~~~~v~~~~~~p~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~  328 (408)
                      ....+..++...      ..+  .-|...++.++++++| ..++..-..|       .|.+++....  .    ..+...
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~----~~~~~p  208 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--L----RLLPAP  208 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--c----eeccCC
Confidence            232222221111      123  3477789999999999 5555443332       2333333221  1    112111


Q ss_pred             cCCCCccccccccceeEEEEEccCCCEEEEeC-C-CeEEEEECCCCCCceeeeeec
Q 015363          329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       329 ~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d-~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      +     .....-...|-+|++++++.++++.+ - +.+.+||..+ ++.+....-.
T Consensus       209 ~-----~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~  258 (305)
T PF07433_consen  209 E-----EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLP  258 (305)
T ss_pred             h-----HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccC
Confidence            0     11122236789999999999888775 3 9999999998 6776665443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=1.4e-05  Score=73.78  Aligned_cols=194  Identities=12%  Similarity=0.107  Sum_probs=125.7

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      ...+.++|++++  +++|+-|+-+|.|++++......                         ....|.            
T Consensus        37 ~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-------------------------~~~~~s------------   77 (846)
T KOG2066|consen   37 LQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-------------------------TNFDHS------------   77 (846)
T ss_pred             HhhhHHHHHHhh--cceeeeccccceEEEEecCCccc-------------------------cccccc------------
Confidence            456788888885  67899999999999999765421                         112222            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccC-----CCeee
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN-----GGCGE  187 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~l~  187 (408)
                      ..        +.+|+++++|+.||+|.|-.+-+.+......++...         .       +++++|+     .+.  
T Consensus        78 ~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpi---------k-------sial~Pd~~~~~sk~--  131 (846)
T KOG2066|consen   78 SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPI---------K-------SIALHPDFSRQQSKQ--  131 (846)
T ss_pred             cc--------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcc---------e-------eEEeccchhhhhhhh--
Confidence            11        456899999999999999999888776666664332         2       5788887     223  


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCce
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS  267 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~  267 (408)
                                +++|+..| +.++.  ++    ..+......+....++|.++.|.  |+++|-++|-.|++||+......
T Consensus       132 ----------fv~GG~ag-lvL~e--r~----wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l  192 (846)
T KOG2066|consen  132 ----------FVSGGMAG-LVLSE--RN----WLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRL  192 (846)
T ss_pred             ----------eeecCcce-EEEeh--hh----hhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEecccccee
Confidence                      27788887 66654  11    00111111235566899999995  78999997777999999954433


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                      .. ++-.. ...........+.|.++.  .|+.| ...+|+|..++.+
T Consensus       193 ~~-i~~p~-~~~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~~~  235 (846)
T KOG2066|consen  193 TN-IPPPS-QSVRPELFPPHLHWQDED--RLVIG-WGDSVKICSIKKR  235 (846)
T ss_pred             ec-cCCCC-CCCCcccCCCceEecCCC--eEEEe-cCCeEEEEEEecc
Confidence            33 22111 011112223568898886  56665 4557899888833

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.46  E-value=0.00055  Score=57.63  Aligned_cols=251  Identities=13%  Similarity=0.095  Sum_probs=137.2

Q ss_pred             eEEEEECC-CCCeEEEeecCCe-EEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           38 ISAIEFDK-SGDHLATGDRGGR-VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        38 V~~~~~s~-~~~~l~sg~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      ...++.+| ++..+|.+.+-|+ ..+||..+++..    ..+        ..|   .-..|.+|-               
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~----~~~--------~a~---~gRHFyGHg---------------   56 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL----QRL--------WAP---PGRHFYGHG---------------   56 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee----eEE--------cCC---CCCEEecCE---------------
Confidence            34778888 5677888887775 578998877642    000        000   112355564               


Q ss_pred             eEEEEeecCCCcEEEEEe-----CCCeEEEEEcC-CCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          116 NKIRWCQSANSALYLLST-----NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~-----~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         .|+  ++|.+|++.-     ..|.|-|||.. +-+.+..+..+.               ..+..+.+.|||+.|...
T Consensus        57 ---~fs--~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G---------------IGPHel~l~pDG~tLvVA  116 (305)
T PF07433_consen   57 ---VFS--PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG---------------IGPHELLLMPDGETLVVA  116 (305)
T ss_pred             ---EEc--CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC---------------cChhhEEEcCCCCEEEEE
Confidence               675  4588888863     46789999999 333333333221               112246677777655332


Q ss_pred             cccccC------ccccCCCCCceeeeceeeecccccccccccee-ec--cccccceEEEEeCCCCCEEEEe-cCC-----
Q 015363          190 FGCASN------DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI-YA--HAHDYHINSISNNSDGETFISA-DDL-----  254 (408)
Q Consensus       190 ~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~v~~i~~~~~~~~l~~~-~d~-----  254 (408)
                      .|....      .-+-....+.++...| ...      +..+.. .+  .-|...++.++++++|..++.. ..+     
T Consensus       117 NGGI~Thpd~GR~kLNl~tM~psL~~ld-~~s------G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~  189 (305)
T PF07433_consen  117 NGGIETHPDSGRAKLNLDTMQPSLVYLD-ARS------GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA  189 (305)
T ss_pred             cCCCccCcccCceecChhhcCCceEEEe-cCC------CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc
Confidence            221100      0011112222222222 111      111111 02  3356679999999999887765 332     


Q ss_pred             --eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceE-EEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363          255 --RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  331 (408)
Q Consensus       255 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  331 (408)
                        .|-+++..   ..+..+.........-...+-+|++++++ .++ +|+-..+.+.+||..++..+    ....-.   
T Consensus       190 ~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~tsPrGg~~~~~d~~tg~~~----~~~~l~---  258 (305)
T PF07433_consen  190 PPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTSPRGGRVAVWDAATGRLL----GSVPLP---  258 (305)
T ss_pred             CCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEECCCCCEEEEEECCCCCEe----eccccC---
Confidence              23344333   22333222222223345778999999999 555 55555789999999999664    222222   


Q ss_pred             CCccccccccceeEEEEEccCCCEEEEeCCCeEEEEE
Q 015363          332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWD  368 (408)
Q Consensus       332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd  368 (408)
                                 .+..++-.+++ ++++...|.+....
T Consensus       259 -----------D~cGva~~~~~-f~~ssG~G~~~~~~  283 (305)
T PF07433_consen  259 -----------DACGVAPTDDG-FLVSSGQGQLIRLS  283 (305)
T ss_pred             -----------ceeeeeecCCc-eEEeCCCccEEEcc
Confidence                       35667777666 77776666644433

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.45  E-value=0.00016  Score=64.47  Aligned_cols=280  Identities=16%  Similarity=0.134  Sum_probs=132.4

Q ss_pred             ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCC--Ccccccccc---------cc-----cccCCC----ccceeeee
Q 015363           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG--GQRRDLEMM---------DY-----SMSRHP----EFRYKTEF   96 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~--~~~~~~~~~---------~~-----~~~~~p----~~~~~~~~   96 (408)
                      .|+.+.|+++..-||+|...|.|.||.+..++..+  .....++..         ..     .-+..|    .+.....+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999998889999999999999987765422  000111100         00     001111    12222223


Q ss_pred             ccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCcee
Q 015363           97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP  176 (408)
Q Consensus        97 ~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (408)
                      +...            ++|++++.+.-  | ++|.|..+|.+.|.|++....+.................+.       +
T Consensus        83 ~~~~------------g~vtal~~S~i--G-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt-------~  140 (395)
T PF08596_consen   83 DAKQ------------GPVTALKNSDI--G-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVT-------S  140 (395)
T ss_dssp             ---S-------------SEEEEEE-BT--S-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EE-------E
T ss_pred             eccC------------CcEeEEecCCC--c-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCee-------E
Confidence            3333            78999999522  4 99999999999999998887766543332100000011111       2


Q ss_pred             eEEc-----cCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEE-eCCC------
Q 015363          177 KSYM-----ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS-NNSD------  244 (408)
Q Consensus       177 ~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~~~------  244 (408)
                      +.|.     .|+.         ....+++|...|.+..|.++-.............. ..+.+.|..|. ++.+      
T Consensus       141 ieF~vm~~~~D~y---------SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~  210 (395)
T PF08596_consen  141 IEFSVMTLGGDGY---------SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESAL  210 (395)
T ss_dssp             EEEEEEE-TTSSS---------EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B
T ss_pred             EEEEEEecCCCcc---------cceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCccc
Confidence            3332     2220         11224788888999988843222222222222211 23444444443 2211      


Q ss_pred             ---------------CCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEc-----CCCCceEEEEeCC
Q 015363          245 ---------------GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----PTHCNMLAYSSSK  304 (408)
Q Consensus       245 ---------------~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~~l~s~~~d  304 (408)
                                     ..+++++.+..++++...+.+...+.       + ........+.+-     ..+ ..|++-..+
T Consensus       211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~-------~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~  281 (395)
T PF08596_consen  211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKS-------F-DDPFLCSSASVVPTISRNGG-YCLVCLFNN  281 (395)
T ss_dssp             -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEE-EEEEEEETT
T ss_pred             CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCccccee-------e-ccccccceEEEEeecccCCc-eEEEEEECC
Confidence                           12444457788999988855444333       2 111222334442     345 788888999


Q ss_pred             CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEEC
Q 015363          305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI  369 (408)
Q Consensus       305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~  369 (408)
                      |.|++|.+..-+.+    ..+.-+.        ......+....++++|..++-.+...+.++.+
T Consensus       282 G~i~i~SLP~Lkei----~~~~l~~--------~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv  334 (395)
T PF08596_consen  282 GSIRIYSLPSLKEI----KSVSLPP--------PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSV  334 (395)
T ss_dssp             SEEEEEETTT--EE----EEEE-SS-----------HHHHTT-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred             CcEEEEECCCchHh----hcccCCC--------ccccccccccEECCCCCEEEEeCcccEEEEEE
Confidence            99999999876544    2222211        00123445667899999887665444444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.42  E-value=9.2e-05  Score=71.74  Aligned_cols=220  Identities=13%  Similarity=0.137  Sum_probs=128.3

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      +.|.++.|..++.-++.+..+|.|.+-|..+...                         ..-+..           ...|
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------------eivg~v-----------d~GI  112 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------------EIVGNV-----------DNGI  112 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-------------------------eeeeec-----------cCce
Confidence            5789999999998899999999999988766542                         111111           1669


Q ss_pred             eEEEEeecCCCcEEEEEeCCCeEEEEEc----CCCcEE--------EEeccCCC--CcccCCC------------CCeE-
Q 015363          116 NKIRWCQSANSALYLLSTNDKTIKLWKV----QEKKVK--------KVFDWNVH--PEKAAGN------------GPIF-  168 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~----~~~~~~--------~~~~~~~~--~~~~~~~------------~~v~-  168 (408)
                      .+++|+|+  .+.++..+.++++.+-.-    -..+..        ........  ..++..+            .... 
T Consensus       113 ~aaswS~D--ee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~  190 (1265)
T KOG1920|consen  113 SAASWSPD--EELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALE  190 (1265)
T ss_pred             EEEeecCC--CcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccccc
Confidence            99999766  779998888888776532    111111        00000000  0001000            0000 


Q ss_pred             --eecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC
Q 015363          169 --GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE  246 (408)
Q Consensus       169 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  246 (408)
                        ..++..+.+.|--||++.+...       +......+.|++|| -. ........       ...+.=.+++|-|.|.
T Consensus       191 ~~~~~~~~~~IsWRgDg~~fAVs~-------~~~~~~~RkirV~d-rE-g~Lns~se-------~~~~l~~~LsWkPsgs  254 (1265)
T KOG1920|consen  191 QIEQDDHKTSISWRGDGEYFAVSF-------VESETGTRKIRVYD-RE-GALNSTSE-------PVEGLQHSLSWKPSGS  254 (1265)
T ss_pred             chhhccCCceEEEccCCcEEEEEE-------EeccCCceeEEEec-cc-chhhcccC-------cccccccceeecCCCC
Confidence              1223445688999998762110       01123338999999 21 11111111       1112335789999999


Q ss_pred             EEEEe----cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEE---EeCCCeEEEEEcCCC
Q 015363          247 TFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY---SSSKGSIRLIDMRQS  315 (408)
Q Consensus       247 ~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s---~~~dg~i~iwd~~~~  315 (408)
                      .+++-    +|+.|.+|.-+.-...--.  +   .++.....+..++|+.++ .+||.   ......|++|-+.+.
T Consensus       255 ~iA~iq~~~sd~~IvffErNGL~hg~f~--l---~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  255 LIAAIQCKTSDSDIVFFERNGLRHGEFV--L---PFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eEeeeeecCCCCcEEEEecCCccccccc--c---CCcccccchheeeecCCC-CceeeeecccccceEEEEEecCe
Confidence            99974    5778999987622221100  0   123333448999999999 88887   445566999988765

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.41  E-value=1.4e-06  Score=72.13  Aligned_cols=160  Identities=10%  Similarity=0.119  Sum_probs=100.2

Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363          119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (408)
Q Consensus       119 ~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (408)
                      +|+-+.-|.. ++.+-+-.|-+-+++++...... .         .+.|+       ++.|...+..+            
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-s---------ksDVf-------AlQf~~s~nLv------------  267 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-S---------KSDVF-------ALQFAGSDNLV------------  267 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeecccccccc-c---------chhHH-------HHHhcccCCee------------
Confidence            6653323433 45566667788888877533221 1         11222       44555555554            


Q ss_pred             cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCC
Q 015363          199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPA  276 (408)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  276 (408)
                      +.|..+|.|..+| ++.... ....+...  --|+..|+++..-. ++.+|.++ .+|+|++||++..+....+     .
T Consensus       268 ~~GcRngeI~~iD-LR~rnq-G~~~~a~r--lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V-----~  338 (425)
T KOG2695|consen  268 FNGCRNGEIFVID-LRCRNQ-GNGWCAQR--LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSV-----M  338 (425)
T ss_pred             EecccCCcEEEEE-eeeccc-CCCcceEE--EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccce-----e
Confidence            9999999999999 554322 11233333  36788899887765 66777766 8999999999954432211     2


Q ss_pred             cccCCcCCeE--EEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          277 NMEDLTEVIT--SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       277 ~~~~~~~~v~--~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      ++.+|-..-.  -+-.++.. ..+++++.|...+||.++.+.+.
T Consensus       339 qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  339 QYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             eeeccccccccccccccccc-ceEEEccCeeEEEEEecccCcee
Confidence            2566643322  23345555 68888999999999999998664

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.41  E-value=0.0011  Score=57.85  Aligned_cols=219  Identities=9%  Similarity=0.060  Sum_probs=106.7

Q ss_pred             EeecCCCcEEEEEe----------CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          120 WCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       120 ~~p~~~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ++  ++|+.++++.          .+..|.+||+.+.+....+.....+......        .+..+.++|||+.+   
T Consensus        53 ~s--pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~--------~~~~~~ls~dgk~l---  119 (352)
T TIGR02658        53 VA--SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT--------YPWMTSLTPDNKTL---  119 (352)
T ss_pred             EC--CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC--------ccceEEECCCCCEE---
Confidence            65  4476666654          5889999999999988877765443211111        12257899999987   


Q ss_pred             cccccCccccCC--CCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCce
Q 015363          190 FGCASNDSSFPP--GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~  267 (408)
                               +..  +.+..|.+.| +...+.      ...+...  ....-...+ +...++.+.||......+...++.
T Consensus       120 ---------~V~n~~p~~~V~VvD-~~~~kv------v~ei~vp--~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~  180 (352)
T TIGR02658       120 ---------LFYQFSPSPAVGVVD-LEGKAF------VRMMDVP--DCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNP  180 (352)
T ss_pred             ---------EEecCCCCCEEEEEE-CCCCcE------EEEEeCC--CCcEEEEec-CCccEEEeecCceEEEEecCCCce
Confidence                     433  3368888888 332111      1111000  001111111 111222223333333322222221


Q ss_pred             eeEeecCCCcccCCcCCe-EEEEEcC-CCCceEEEEeCCCeEEEEEcCCCceec-ccccccccccCCCCcccccccccee
Q 015363          268 FNIVDVKPANMEDLTEVI-TSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v-~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      . ....  .-+......+ ..-.|.+ +| .++..... |.|.+.|+....... .++..+.....   +.-+  ..+.+
T Consensus       181 ~-~~~~--~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~---~~~w--rP~g~  250 (352)
T TIGR02658       181 K-IKPT--EVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK---ADGW--RPGGW  250 (352)
T ss_pred             E-Eeee--eeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeecccccc---cccc--CCCcc
Confidence            1 0000  0011100000 0114456 77 55555444 999999975543211 11111111100   0000  11344


Q ss_pred             EEEEEccCCCEEEEeC---------C--CeEEEEECCCCCCceeeeee
Q 015363          345 SDIKFARNGRHILSRD---------Y--MTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       345 ~~~~~spdg~~l~s~~---------d--~~v~~wd~~~~~~~~~~~~~  381 (408)
                      .-++++|+++.|+...         +  +.|.++|..+ ++.+..+..
T Consensus       251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v  297 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL  297 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC
Confidence            4599999999888731         1  5899999998 677777654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.37  E-value=1.1e-05  Score=66.01  Aligned_cols=130  Identities=15%  Similarity=0.198  Sum_probs=77.3

Q ss_pred             cceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCceeeEeec-----CC---CcccCCcCCeEEEEEcCCCCceEEEEeC
Q 015363          234 YHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDV-----KP---ANMEDLTEVITSAEFHPTHCNMLAYSSS  303 (408)
Q Consensus       234 ~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~-----~~---~~~~~~~~~v~~~~~~p~~~~~l~s~~~  303 (408)
                      .-|++..|+|... .+..+ +.|.|++-|++....+.....+     .+   .-+.+-...|..+.|+++| +++++-+ 
T Consensus       222 eVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRd-  299 (460)
T COG5170         222 EVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRD-  299 (460)
T ss_pred             HHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEec-
Confidence            3467788888753 34444 8999999999844333221110     00   0122233567889999999 8877643 


Q ss_pred             CCeEEEEEcCCCceecccccccccccCCC--Ccccccccccee---EEEEEccCCCEEEEeCC-CeEEEEECC
Q 015363          304 KGSIRLIDMRQSALCDTHSKLFEEQEAPG--TRSFFTEIIASI---SDIKFARNGRHILSRDY-MTLKLWDIN  370 (408)
Q Consensus       304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~i---~~~~~spdg~~l~s~~d-~~v~~wd~~  370 (408)
                      =-+|+|||.+..+   .|+++...|....  ...++.  ...|   ..+.||.|.+.+.+|+. +..-++-..
T Consensus       300 yltvkiwDvnm~k---~pikTi~~h~~l~~~l~d~YE--nDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         300 YLTVKIWDVNMAK---NPIKTIPMHCDLMDELNDVYE--NDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             cceEEEEeccccc---CCceeechHHHHHHHHHhhhh--ccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            4689999999876   3456665553210  001110  1122   35788888888888874 566666543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.33  E-value=1.3e-05  Score=71.77  Aligned_cols=80  Identities=14%  Similarity=0.270  Sum_probs=64.1

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ..+.....|.|++++|+.+.|+.|+.||.|.+||...+..                         .+....         
T Consensus       254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-------------------------~~~ka~---------  299 (545)
T PF11768_consen  254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-------------------------LLAKAE---------  299 (545)
T ss_pred             EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-------------------------eeeeec---------
Confidence            4467888999999999999999999999999999765532                         121122         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV  148 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~  148 (408)
                         -.++.++|+|+  |..+++|+..|.+.+||+.-...
T Consensus       300 ---~~P~~iaWHp~--gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  300 ---FIPTLIAWHPD--GAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             ---ccceEEEEcCC--CcEEEEEcCCceEEEEEeecCcc
Confidence               33788999765  88999999999999999975543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.32  E-value=0.00023  Score=64.14  Aligned_cols=203  Identities=7%  Similarity=0.020  Sum_probs=100.6

Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc-------ccCCCCCeEeecCCceeeEEcc-CCCeeecccc------
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE-------KAAGNGPIFGSHVSAIPKSYMA-NGGCGERNFG------  191 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~~~~------  191 (408)
                      +..++.++.++.+..||.++++.+..........       .....+.++.......-.++.+ +|+.+-....      
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~  224 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR  224 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence            3467778889999999999988766554432210       0011122222222122223332 3433311100      


Q ss_pred             --------c-----ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEE
Q 015363          192 --------C-----ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRIN  257 (408)
Q Consensus       192 --------~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~  257 (408)
                              .     .....++.++.++.+..+| ....+      ..... . . .......  ..+..++.+ .+|.+.
T Consensus       225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d-~~tG~------~~W~~-~-~-~~~~~p~--~~~~~vyv~~~~G~l~  292 (377)
T TIGR03300       225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALD-LRSGR------VLWKR-D-A-SSYQGPA--VDDNRLYVTDADGVVV  292 (377)
T ss_pred             CchhhhhccCCccEEECCEEEEEEcCCEEEEEE-CCCCc------EEEee-c-c-CCccCce--EeCCEEEEECCCCeEE
Confidence                    0     0112344555677777777 32211      11111 0 0 0111111  235566666 899999


Q ss_pred             EEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccc
Q 015363          258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF  337 (408)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (408)
                      .+|..+++...+...     +..  ....+...  .+ ..+++++.+|.|+++|..+++..    ..++.+.        
T Consensus       293 ~~d~~tG~~~W~~~~-----~~~--~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~~~----~~~~~~~--------  350 (377)
T TIGR03300       293 ALDRRSGSELWKNDE-----LKY--RQLTAPAV--VG-GYLVVGDFEGYLHWLSREDGSFV----ARLKTDG--------  350 (377)
T ss_pred             EEECCCCcEEEcccc-----ccC--CccccCEE--EC-CEEEEEeCCCEEEEEECCCCCEE----EEEEcCC--------
Confidence            999985554433200     111  11122222  24 57888899999999999998765    3333221        


Q ss_pred             cccccee-EEEEEccCCCEEEEeCCCeEEEE
Q 015363          338 TEIIASI-SDIKFARNGRHILSRDYMTLKLW  367 (408)
Q Consensus       338 ~~h~~~i-~~~~~spdg~~l~s~~d~~v~~w  367 (408)
                          ..+ ....+ .++++++.+.||.|..|
T Consensus       351 ----~~~~~sp~~-~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       351 ----SGIASPPVV-VGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             ----CccccCCEE-ECCEEEEEeCCceEEEe
Confidence                112 12222 24555555567888776

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.30  E-value=0.001  Score=56.02  Aligned_cols=208  Identities=10%  Similarity=0.095  Sum_probs=116.7

Q ss_pred             EEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEc-cCCCeeecccccccC
Q 015363          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-ANGGCGERNFGCASN  195 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~~~~~~~  195 (408)
                      ++.|.+. ++.++++-...+.|..|+..+++.... ....                 +..+.+. +++..+         
T Consensus         4 gp~~d~~-~g~l~~~D~~~~~i~~~~~~~~~~~~~-~~~~-----------------~~G~~~~~~~g~l~---------   55 (246)
T PF08450_consen    4 GPVWDPR-DGRLYWVDIPGGRIYRVDPDTGEVEVI-DLPG-----------------PNGMAFDRPDGRLY---------   55 (246)
T ss_dssp             EEEEETT-TTEEEEEETTTTEEEEEETTTTEEEEE-ESSS-----------------EEEEEEECTTSEEE---------
T ss_pred             ceEEECC-CCEEEEEEcCCCEEEEEECCCCeEEEE-ecCC-----------------CceEEEEccCCEEE---------
Confidence            4678542 466777766889999999988865442 2211                 1145555 555543         


Q ss_pred             ccccCCCCCceeeeceeeeccccccccccceeeccc-cccceEEEEeCCCCCEEEEe-cC--------CeEEEEeCCCCC
Q 015363          196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DD--------LRINLWNLEISN  265 (408)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~-~d--------~~i~iwd~~~~~  265 (408)
                          .+...+. .++| ....+.....   ...... .....+.++++|+|++.++. ..        +.|..++..  .
T Consensus        56 ----v~~~~~~-~~~d-~~~g~~~~~~---~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~  124 (246)
T PF08450_consen   56 ----VADSGGI-AVVD-PDTGKVTVLA---DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--G  124 (246)
T ss_dssp             ----EEETTCE-EEEE-TTTTEEEEEE---EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--S
T ss_pred             ----EEEcCce-EEEe-cCCCcEEEEe---eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--C
Confidence                3333332 3324 2221111000   000011 34678899999999988874 22        456666665  2


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      +....        ...-.....|+|+|++..++++-+..+.|..+++..........+.+....         .-.+..-
T Consensus       125 ~~~~~--------~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~g~pD  187 (246)
T PF08450_consen  125 KVTVV--------ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP---------GGPGYPD  187 (246)
T ss_dssp             EEEEE--------EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S---------SSSCEEE
T ss_pred             eEEEE--------ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcC---------CCCcCCC
Confidence            32222        112344689999999933445667788999999874332001112221110         0013477


Q ss_pred             EEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeec
Q 015363          346 DIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       346 ~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      .+++..+|++.++. ..+.|.+++-+  |+.+..+...
T Consensus       188 G~~vD~~G~l~va~~~~~~I~~~~p~--G~~~~~i~~p  223 (246)
T PF08450_consen  188 GLAVDSDGNLWVADWGGGRIVVFDPD--GKLLREIELP  223 (246)
T ss_dssp             EEEEBTTS-EEEEEETTTEEEEEETT--SCEEEEEE-S
T ss_pred             cceEcCCCCEEEEEcCCCEEEEECCC--ccEEEEEcCC
Confidence            89999999887776 45899999985  7888888776

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=0.00021  Score=60.88  Aligned_cols=222  Identities=14%  Similarity=0.109  Sum_probs=116.5

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..|.+++|+|..+| ++..++.+..|+|.|+++..+......+.         .++       +++|.-|....      
T Consensus       194 ~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy~a~~---------~~w-------SC~wDlde~h~------  250 (463)
T KOG1645|consen  194 SFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSYIAYN---------QIW-------SCCWDLDERHV------  250 (463)
T ss_pred             hhhhhhccCccccc-eeeeeccCceEEEEecccceeeeheeccC---------Cce-------eeeeccCCcce------
Confidence            66999999988665 88899999999999999987766555432         344       56776665432      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEE------eCCCCCEEEEecCCeEEEEeCCCCCc
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS------NNSDGETFISADDLRINLWNLEISNQ  266 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~------~~~~~~~l~~~~d~~i~iwd~~~~~~  266 (408)
                           ++.|..+|.|.+|| ++..+.......-    .....+|..++      ..+.+.+|+... -.+..|.+.....
T Consensus       251 -----IYaGl~nG~VlvyD-~R~~~~~~~e~~a----~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~  319 (463)
T KOG1645|consen  251 -----IYAGLQNGMVLVYD-MRQPEGPLMELVA----NVTINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAE  319 (463)
T ss_pred             -----eEEeccCceEEEEE-ccCCCchHhhhhh----hhccCcceeecccCccccccccceEEeee-hhhhhhhhhcccc
Confidence                 48999999999999 6554432111000    01112333332      233344444331 1245666553322


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEE----EEcCCCceecccccccccccCCCCcccccc
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRL----IDMRQSALCDTHSKLFEEQEAPGTRSFFTE  339 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~i----wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (408)
                      ....+     .-.+..+.+.++++.+....+|++.-.+.   +++.    -|.+.|..+-..-....+....      .-
T Consensus       320 ~~p~v-----lele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~------kl  388 (463)
T KOG1645|consen  320 CLPCV-----LELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQT------KL  388 (463)
T ss_pred             CCCcc-----cccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccc------cc
Confidence            21110     01122455667777775535555554321   1111    1112221110000111011000      00


Q ss_pred             ccceeEEEEEccCCCEEEEe-CC-CeEEEEECCCCCCceeeeeec
Q 015363          340 IIASISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       340 h~~~i~~~~~spdg~~l~s~-~d-~~v~~wd~~~~~~~~~~~~~~  382 (408)
                        ..-..+.=.++.++|+.- ++ +.+.+||..+ ...++++.-.
T Consensus       389 --~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s-~evvQ~l~~~  430 (463)
T KOG1645|consen  389 --STTQAIRAVEDNNYIVVVGDSTNELILQDPHS-FEVVQTLALS  430 (463)
T ss_pred             --ccccceeccccccEEEEecCCcceeEEeccch-hheeeecccC
Confidence              001112223566777654 44 9999999998 6888888765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.3e-05  Score=69.01  Aligned_cols=226  Identities=9%  Similarity=0.000  Sum_probs=132.5

Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEecc-CCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW-NVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      |.+.|+.+.-..   .+++.+++.||.++.|.-..-.-...... ..+      .+.+.       .++.+-+|...   
T Consensus         8 hrd~i~hv~~tk---a~fiiqASlDGh~KFWkKs~isGvEfVKhFraH------L~~I~-------sl~~S~dg~L~---   68 (558)
T KOG0882|consen    8 HRDVITHVFPTK---AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAH------LGVIL-------SLAVSYDGWLF---   68 (558)
T ss_pred             ccceeeeEeeeh---hheEEeeecchhhhhcCCCCccceeehhhhHHH------HHHHH-------hhhccccceeE---
Confidence            335577666532   35999999999999998665222222111 111      11111       34444555443   


Q ss_pred             cccccCccccCCCC-CceeeeceeeeccccccccccceeeccccccceEEEEeCCCC--CEEEEe--cCCeEEEEeCCCC
Q 015363          190 FGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA--DDLRINLWNLEIS  264 (408)
Q Consensus       190 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~--~d~~i~iwd~~~~  264 (408)
                               .+... |..++++| +.+.+.....+.  .+++   +.+. ...++..  ..++.+  .++.+.++|-...
T Consensus        69 ---------~Sv~d~Dhs~KvfD-vEn~DminmiKL--~~lP---g~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d  132 (558)
T KOG0882|consen   69 ---------RSVEDPDHSVKVFD-VENFDMINMIKL--VDLP---GFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGD  132 (558)
T ss_pred             ---------eeccCcccceeEEE-eeccchhhhccc--ccCC---CceE-EecCCCCeeeeEEeecccCCCcEEECCcCC
Confidence                     66555 89999999 655444211110  0011   2222 1122321  245555  7999999998844


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC-CceecccccccccccCCCCccccccccce
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                      .......      -.-|..+|..+.++|-+ ..+++....|.|.-|.... .+.....+..-..|+  .....+......
T Consensus       133 ~~q~~~f------kklH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e--TdLy~f~K~Kt~  203 (558)
T KOG0882|consen  133 FCQDGYF------KKLHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE--TDLYGFPKAKTE  203 (558)
T ss_pred             cCcccee------cccccCceEEEEeeccc-cceeeccccceeEeecCCCcccCcccccccccccc--chhhcccccccC
Confidence            4222211      34588999999999999 8888888899999998873 110000000000000  001112223456


Q ss_pred             eEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeee
Q 015363          344 ISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       344 i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      ..++.|+|+|..+.+- .|..|+++++++ |+.++.+..
T Consensus       204 pts~Efsp~g~qistl~~DrkVR~F~~Kt-GklvqeiDE  241 (558)
T KOG0882|consen  204 PTSFEFSPDGAQISTLNPDRKVRGFVFKT-GKLVQEIDE  241 (558)
T ss_pred             ccceEEccccCcccccCcccEEEEEEecc-chhhhhhhc
Confidence            7899999999999986 579999999998 787776654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.27  E-value=7.2e-06  Score=73.32  Aligned_cols=73  Identities=18%  Similarity=0.251  Sum_probs=60.3

Q ss_pred             CCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363          280 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  359 (408)
Q Consensus       280 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~  359 (408)
                      .....+.+++++|+. ..|+.|+.||.|.+||...+..      .+...            .-.++.++|+|+|.++++|
T Consensus       257 pL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t------~~~ka------------~~~P~~iaWHp~gai~~V~  317 (545)
T PF11768_consen  257 PLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVT------LLAKA------------EFIPTLIAWHPDGAIFVVG  317 (545)
T ss_pred             ecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCee------eeeee------------cccceEEEEcCCCcEEEEE
Confidence            356778999999999 9999999999999999987632      11111            1357889999999999999


Q ss_pred             CC-CeEEEEECCC
Q 015363          360 DY-MTLKLWDINM  371 (408)
Q Consensus       360 ~d-~~v~~wd~~~  371 (408)
                      ++ |.+.+||+..
T Consensus       318 s~qGelQ~FD~AL  330 (545)
T PF11768_consen  318 SEQGELQCFDMAL  330 (545)
T ss_pred             cCCceEEEEEeec
Confidence            87 9999999976

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.26  E-value=6.7e-05  Score=69.19  Aligned_cols=222  Identities=10%  Similarity=0.095  Sum_probs=121.6

Q ss_pred             eeccceEEEEECCC------C------CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCC
Q 015363           33 QEVDIISAIEFDKS------G------DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE  100 (408)
Q Consensus        33 ~h~~~V~~~~~s~~------~------~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~  100 (408)
                      .|...|+.+.|.|-      +      -+||++...|.|.|||......                       ...++.|.
T Consensus        53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~-----------------------~~~l~~~~  109 (1062)
T KOG1912|consen   53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV-----------------------INWLSHSN  109 (1062)
T ss_pred             cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh-----------------------hhhhcCCC
Confidence            47899999999872      1      2688888999999999876653                       23456666


Q ss_pred             cccccccccccccceeEEEEeecCCCc--EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeE
Q 015363          101 PEFDYLKSLEIEEKINKIRWCQSANSA--LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS  178 (408)
Q Consensus       101 ~~~~~~~~~~~~~~v~~v~~~p~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (408)
                                  ++|.+++|.|..+.+  .|++-..-.++.+|+..+|+...........         ..      ++.
T Consensus       110 ------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i---------Ls------~f~  162 (1062)
T KOG1912|consen  110 ------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI---------LS------CFR  162 (1062)
T ss_pred             ------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc---------ee------eee
Confidence                        779999999876644  5666677789999999999876554432211         10      122


Q ss_pred             EccCC-CeeecccccccC----ccccCCCCCceeeeceeeecc--ccc-----cccccceeeccccc---cceEEEEeCC
Q 015363          179 YMANG-GCGERNFGCASN----DSSFPPGGVSSLRLPVVVTSQ--ETN-----LVAGCRRIYAHAHD---YHINSISNNS  243 (408)
Q Consensus       179 ~~~~~-~~l~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~--~~~-----~~~~~~~~~~~~~~---~~v~~i~~~~  243 (408)
                      +.|-. +.+ ++.+....    .++...-.++..+.+. +...  +..     .......+......   ...-.++|+|
T Consensus       163 ~DPfd~rh~-~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p  240 (1062)
T KOG1912|consen  163 VDPFDSRHF-CVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP  240 (1062)
T ss_pred             eCCCCcceE-EEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence            22211 111 00000000    0011111122222222 1111  000     00000000000000   0012356777


Q ss_pred             CC-CEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCC-ceEEEEeCCCeEEEEEcCC
Q 015363          244 DG-ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQ  314 (408)
Q Consensus       244 ~~-~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~  314 (408)
                      .- +.++......+.++|++ -..++..+.+       ..+.+.-+.+-|++. ..|.+...||.+.+|-.+.
T Consensus       241 ~~rn~lfi~~prellv~dle-~~~~l~vvpi-------er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  241 HWRNILFITFPRELLVFDLE-YECCLAVVPI-------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhhceEEEEeccceEEEcch-hhceeEEEEe-------ccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            65 44455577889999999 5555555432       234455677777762 4678888899999997654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.23  E-value=1.3e-06  Score=81.11  Aligned_cols=217  Identities=17%  Similarity=0.267  Sum_probs=133.8

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      +..|...-+|++|+-+.++|+.|+..|.|+++++.++..                       .....+|.          
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----------------------e~s~ncH~---------- 1143 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----------------------EESVNCHQ---------- 1143 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-----------------------cccccccc----------
Confidence            346788899999999999999999999999999998864                       24567777          


Q ss_pred             cccceeEEEEeecCCCcEEEEEe--CCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          111 IEEKINKIRWCQSANSALYLLST--NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~--~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                        +.|+-+.-+  .+|+.+++.+  ..--..+|++.+ +.....+..  ..                 ++.|+...+.- 
T Consensus      1144 --SavT~vePs--~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e--d~-----------------~vkFsn~~q~r- 1199 (1516)
T KOG1832|consen 1144 --SAVTLVEPS--VDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE--DK-----------------AVKFSNSLQFR- 1199 (1516)
T ss_pred             --ccccccccc--CCcceeeeeccccCchHHHhccccccCccccccc--cc-----------------eeehhhhHHHH-
Confidence              778887764  5577766654  233578999875 222222221  11                 34555443332 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeec---cccccceEEEEeCCCCCEEEEecCCeEEEEeCCCC
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA---HAHDYHINSISNNSDGETFISADDLRINLWNLEIS  264 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~  264 (408)
                                 +.|.......+|| +...      .+..+++   .+....-+.+.|+|+..+++  .||  .+||++..
T Consensus      1200 -----------~~gt~~d~a~~YD-vqT~------~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1200 -----------ALGTEADDALLYD-VQTC------SPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIP 1257 (1516)
T ss_pred             -----------HhcccccceEEEe-cccC------cHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeeeccH
Confidence                       5566667788888 4321      1111111   11122236788999987766  444  48999944


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                       +.+..       +...... -.-.|+|.| .-++.-+     .|||+++.+.+    +..+.-              .-
T Consensus      1258 -~aIh~-------FD~ft~~-~~G~FHP~g-~eVIINS-----EIwD~RTF~lL----h~VP~L--------------dq 1304 (1516)
T KOG1832|consen 1258 -EAIHR-------FDQFTDY-GGGGFHPSG-NEVIINS-----EIWDMRTFKLL----HSVPSL--------------DQ 1304 (1516)
T ss_pred             -HHHhh-------hhhheec-ccccccCCC-ceEEeec-----hhhhhHHHHHH----hcCccc--------------cc
Confidence             43332       2211111 234799999 6565544     48999998654    333222              12


Q ss_pred             EEEEEccCCCEEEEe
Q 015363          345 SDIKFARNGRHILSR  359 (408)
Q Consensus       345 ~~~~~spdg~~l~s~  359 (408)
                      ..+.|+..|..+++.
T Consensus      1305 c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             eEEEeccCccchhhh
Confidence            456787777766653

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.22  E-value=0.00099  Score=55.15  Aligned_cols=218  Identities=11%  Similarity=0.153  Sum_probs=108.9

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..+..++|.|+ ++.++++....+.|...+++ ++.+.........       -.-       .+++..++.++      
T Consensus        22 ~e~SGLTy~pd-~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~-------D~E-------gI~y~g~~~~v------   79 (248)
T PF06977_consen   22 DELSGLTYNPD-TGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFG-------DYE-------GITYLGNGRYV------   79 (248)
T ss_dssp             S-EEEEEEETT-TTEEEEEETTTTEEEEEETT---EEEEEE-SS-S-------SEE-------EEEE-STTEEE------
T ss_pred             CCccccEEcCC-CCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCC-------Cce-------eEEEECCCEEE------
Confidence            45999999764 24577777888999888875 6666665553211       111       56777777665      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccc-cccc--ccee-eccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC--CC
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETN-LVAG--CRRI-YAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI--SN  265 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~--~~  265 (408)
                            ++...++.+.+++ +...... ....  .... +...++..+-.++|+|.++.|+.+ ...-..+|.++.  ..
T Consensus        80 ------l~~Er~~~L~~~~-~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~  152 (248)
T PF06977_consen   80 ------LSEERDQRLYIFT-IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG  152 (248)
T ss_dssp             ------EEETTTTEEEEEE-E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S
T ss_pred             ------EEEcCCCcEEEEE-EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc
Confidence                  5555677777766 4221111 1111  0111 112355678999999998877777 666666776653  12


Q ss_pred             ceeeEeecCC-CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          266 QSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       266 ~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      .......... .........+.+++++|....+++....+..|..+| ..|+.+.  ...+....     .-+.......
T Consensus       153 ~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~--~~~L~~g~-----~gl~~~~~Qp  224 (248)
T PF06977_consen  153 FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVS--SLSLDRGF-----HGLSKDIPQP  224 (248)
T ss_dssp             S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEE--EEE-STTG-----GG-SS---SE
T ss_pred             cceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEE--EEEeCCcc-----cCcccccCCc
Confidence            2222111100 001122344788999998767888888889999999 4554331  01111100     0000001246


Q ss_pred             EEEEEccCCCEEEEeCCCeEEEE
Q 015363          345 SDIKFARNGRHILSRDYMTLKLW  367 (408)
Q Consensus       345 ~~~~~spdg~~l~s~~d~~v~~w  367 (408)
                      -.|+|.++|++.+++.-+..+.|
T Consensus       225 EGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  225 EGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEEE-TT--EEEEETTTEEEEE
T ss_pred             cEEEECCCCCEEEEcCCceEEEe
Confidence            78999999988777765655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.19  E-value=0.00032  Score=68.14  Aligned_cols=194  Identities=13%  Similarity=0.158  Sum_probs=102.7

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcc---ceeeeeccCCcccccc-----
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF---RYKTEFQSHEPEFDYL-----  106 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~h~~~~~~~-----  106 (408)
                      .+.|.+++||||++.++..+..+++.+-.. +-..  ...++++.......-+++.   +..+.|+|..+....-     
T Consensus       109 d~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~--i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~  185 (1265)
T KOG1920|consen  109 DNGISAASWSPDEELLALITGRQTLLFMTK-DFEP--IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEK  185 (1265)
T ss_pred             cCceEEEeecCCCcEEEEEeCCcEEEEEec-cccc--hhccccccccccccccceecccccceeeecchhhhcccccccc
Confidence            568999999999999999988888865443 1111  1111221111100111111   1111233222100000     


Q ss_pred             -c---ccccccceeEEEEeecCCCcEEEEEe----CC-CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceee
Q 015363          107 -K---SLEIEEKINKIRWCQSANSALYLLST----ND-KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK  177 (408)
Q Consensus       107 -~---~~~~~~~v~~v~~~p~~~~~~l~~~~----~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  177 (408)
                       +   ..+..+.=+.|.|  ..||++||+..    .+ +.|++||.+ +....+......               ...++
T Consensus       186 ek~~~~~~~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~---------------l~~~L  247 (1265)
T KOG1920|consen  186 EKALEQIEQDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEG---------------LQHSL  247 (1265)
T ss_pred             cccccchhhccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccc---------------cccce
Confidence             0   0012233456899  67798998842    34 899999987 433222111110               01168


Q ss_pred             EEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE---e-cC
Q 015363          178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS---A-DD  253 (408)
Q Consensus       178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~---~-~d  253 (408)
                      +|-|.|..+++++..         ..++.|.++. -.+..   .+...-.+ ......+..++|+.++.+||+   . ..
T Consensus       248 sWkPsgs~iA~iq~~---------~sd~~IvffE-rNGL~---hg~f~l~~-p~de~~ve~L~Wns~sdiLAv~~~~~e~  313 (1265)
T KOG1920|consen  248 SWKPSGSLIAAIQCK---------TSDSDIVFFE-RNGLR---HGEFVLPF-PLDEKEVEELAWNSNSDILAVVTSNLEN  313 (1265)
T ss_pred             eecCCCCeEeeeeec---------CCCCcEEEEe-cCCcc---ccccccCC-cccccchheeeecCCCCceeeeeccccc
Confidence            999999887544332         2334666665 22211   11111111 223344889999999999997   3 45


Q ss_pred             CeEEEEeCCC
Q 015363          254 LRINLWNLEI  263 (408)
Q Consensus       254 ~~i~iwd~~~  263 (408)
                      ..|++|-+.+
T Consensus       314 ~~v~lwt~~N  323 (1265)
T KOG1920|consen  314 SLVQLWTTGN  323 (1265)
T ss_pred             ceEEEEEecC
Confidence            5699998874

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.00024  Score=66.45  Aligned_cols=154  Identities=14%  Similarity=0.185  Sum_probs=96.8

Q ss_pred             eeeeceeeeccccccccccc---eeec---cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC--CCceeeEeecCCC
Q 015363          206 SLRLPVVVTSQETNLVAGCR---RIYA---HAHDYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQSFNIVDVKPA  276 (408)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~~~  276 (408)
                      .+++|+ +...+......|.   +.+.   .....++.+++++.+-..+|+| .+|.|.++.=+-  .+.....+     
T Consensus        93 llkiw~-lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~-----  166 (933)
T KOG2114|consen   93 LLKIWD-LEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY-----  166 (933)
T ss_pred             EEEEec-ccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee-----
Confidence            589999 7665544434444   2221   1235678899999999999999 999999884321  11111111     


Q ss_pred             cccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEE
Q 015363          277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI  356 (408)
Q Consensus       277 ~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l  356 (408)
                       ......+|+.+.+..++ ..++.......|.+|.+.....   ..+.+..+            .....|.+|++....+
T Consensus       167 -~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~y~l~gr~p---~~~~ld~~------------G~~lnCss~~~~t~qf  229 (933)
T KOG2114|consen  167 -SHRGKEPITGLALRSDG-KSVLFVATTEQVMLYSLSGRTP---SLKVLDNN------------GISLNCSSFSDGTYQF  229 (933)
T ss_pred             -eccCCCCceeeEEecCC-ceeEEEEecceeEEEEecCCCc---ceeeeccC------------CccceeeecCCCCccE
Confidence             22346889999999998 4423333456799999884320   11223333            4678899998755546


Q ss_pred             EEeCCCeEEEEECCCCCCceeeee-ecc
Q 015363          357 LSRDYMTLKLWDINMDSGPVATFQ-VHE  383 (408)
Q Consensus       357 ~s~~d~~v~~wd~~~~~~~~~~~~-~~~  383 (408)
                      +++.+..+.+|+.+. ..+-.+|. +|.
T Consensus       230 Ica~~e~l~fY~sd~-~~~cfaf~~g~k  256 (933)
T KOG2114|consen  230 ICAGSEFLYFYDSDG-RGPCFAFEVGEK  256 (933)
T ss_pred             EEecCceEEEEcCCC-cceeeeecCCCe
Confidence            666666999999985 34444444 443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.15  E-value=0.0022  Score=58.16  Aligned_cols=132  Identities=8%  Similarity=-0.008  Sum_probs=74.3

Q ss_pred             CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccc
Q 015363          246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL  324 (408)
Q Consensus       246 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  324 (408)
                      ..++.+ .++.+..+|..+++...+. +     +..    ...+..  .+ ..++.++.+|.+..+|..+++..-+. ..
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~~~W~~-~-----~~~----~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~~W~~-~~  322 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQIVWKR-E-----YGS----VNDFAV--DG-GRIYLVDQNDRVYALDTRGGVELWSQ-SD  322 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCCEEEee-c-----CCC----ccCcEE--EC-CEEEEEcCCCeEEEEECCCCcEEEcc-cc
Confidence            344444 7899999999866554432 0     111    112222  34 46667778999999999988653210 00


Q ss_pred             cccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeecee
Q 015363          325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIH  404 (408)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  404 (408)
                      + ..             ......... ++.+++...+|.|.+.|.++ |+.+...+........-....++.++..++..
T Consensus       323 ~-~~-------------~~~~sp~v~-~g~l~v~~~~G~l~~ld~~t-G~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G  386 (394)
T PRK11138        323 L-LH-------------RLLTAPVLY-NGYLVVGDSEGYLHWINRED-GRFVAQQKVDSSGFLSEPVVADDKLLIQARDG  386 (394)
T ss_pred             c-CC-------------CcccCCEEE-CCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCcceeCCEEECCEEEEEeCCc
Confidence            0 00             011111121 44444444579999999997 78877766533222222224566777777777


Q ss_pred             eec
Q 015363          405 TLY  407 (408)
Q Consensus       405 ~~~  407 (408)
                      .||
T Consensus       387 ~l~  389 (394)
T PRK11138        387 TVY  389 (394)
T ss_pred             eEE
Confidence            776

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.15  E-value=4.8e-05  Score=71.38  Aligned_cols=184  Identities=15%  Similarity=0.150  Sum_probs=122.0

Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (408)
                      ++.++-|+....+..+|+++.+..+........                 ..-.-.+++.+            ++|...|
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-----------------v~imR~Nnr~l------------f~G~t~G  197 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-----------------VTIMRYNNRNL------------FCGDTRG  197 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCc-----------------eEEEEecCcEE------------Eeecccc
Confidence            446777887778888898887766655443211                 12233445555            9999999


Q ss_pred             eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--c--------CCeEEEEeCCCCCceeeEeecCC
Q 015363          206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--------DLRINLWNLEISNQSFNIVDVKP  275 (408)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~--------d~~i~iwd~~~~~~~~~~~~~~~  275 (408)
                      +|.+-| ...      -+.++.+ .+|.+.|..+..  .|+.|+++  +        |.-|+|||++..+...-      
T Consensus       198 ~V~LrD-~~s------~~~iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P------  261 (1118)
T KOG1275|consen  198 TVFLRD-PNS------FETIHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP------  261 (1118)
T ss_pred             eEEeec-CCc------Cceeeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC------
Confidence            999877 433      2334444 889988876554  68888874  2        45689999995543321      


Q ss_pred             CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCE
Q 015363          276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH  355 (408)
Q Consensus       276 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~  355 (408)
                        +.-+.++ .-+.|.|.-+..+++++..|...+-|..+...-  +...+.-+..          ++.+..+++|++|..
T Consensus       262 --I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~----------~s~i~~fDiSsn~~a  326 (1118)
T KOG1275|consen  262 --IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPN----------GSGISAFDISSNGDA  326 (1118)
T ss_pred             --cccccCc-hhhhhcccccceEEEEecccceeeccccccCCC--ccceeEEccC----------CCcceeEEecCCCce
Confidence              1222222 457899988788999999999999884432210  0122221211          245999999999999


Q ss_pred             EEEeC-CCeEEEEEC
Q 015363          356 ILSRD-YMTLKLWDI  369 (408)
Q Consensus       356 l~s~~-d~~v~~wd~  369 (408)
                      |+.|+ +|.|.+|.-
T Consensus       327 lafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  327 LAFGDHEGHVNLWAD  341 (1118)
T ss_pred             EEEecccCcEeeecC
Confidence            99996 699999973

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.06  E-value=3.2e-06  Score=75.88  Aligned_cols=211  Identities=14%  Similarity=0.178  Sum_probs=128.6

Q ss_pred             cceEEEEECCC--CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           36 DIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        36 ~~V~~~~~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      -.+.|+++.-+  ..+++.|..+|.|.|-........                     -.....+|.            .
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---------------------s~E~tp~~a------------r  103 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---------------------SAEVTPGYA------------R  103 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccc---------------------cceeccccc------------c
Confidence            34677777654  358999999999999887654320                     000112232            5


Q ss_pred             ceeEEEEeecCCCcEEEEEe----CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          114 KINKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..++++|.+- |.+.||+|-    .|..+.|||+.++-....-...     +.. +    ....-..++|..+.+.+   
T Consensus       104 ~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~-----fs~-~----~l~gqns~cwlrd~klv---  169 (783)
T KOG1008|consen  104 PCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL-----FSS-S----TLDGQNSVCWLRDTKLV---  169 (783)
T ss_pred             cccccccccc-cHHHHHhhhhhhcccCCccceecccccCCCccccc-----ccc-c----cccCccccccccCcchh---
Confidence            6889999864 445677663    5678999999876321111110     000 0    00111146777777766   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEecCCeEEEEe-CCCCCce
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISADDLRINLWN-LEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~d~~i~iwd-~~~~~~~  267 (408)
                               .+|...+.++++| ++....       .. ..-....+..+.++| .++++++-.|+.|.+|| .+.-+..
T Consensus       170 ---------laGm~sr~~~ifd-lRqs~~-------~~-~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienp  231 (783)
T KOG1008|consen  170 ---------LAGMTSRSVHIFD-LRQSLD-------SV-SSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENP  231 (783)
T ss_pred             ---------hcccccchhhhhh-hhhhhh-------hh-hhhhhhhcccceecCCCCCceeccccCceeeccchhhhccH
Confidence                     8888889999998 432111       00 012224567788898 77888877899999999 4433333


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC-CeEEEEEcCC
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMRQ  314 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g~i~iwd~~~  314 (408)
                      +..+.-   .-......+..++|.|..+.++++...| ++|++||+..
T Consensus       232 l~~i~~---~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  232 LQIILR---NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             HHHHhh---CCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            322110   0111123588999999876677777765 7899999864

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.01  E-value=0.0038  Score=52.19  Aligned_cols=194  Identities=12%  Similarity=0.069  Sum_probs=95.4

Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (408)
                      +..+++++.++.+..||..+++.............                 .....+..+            +.+..++
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-----------------~~~~~~~~v------------~v~~~~~   86 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-----------------APVVDGGRV------------YVGTSDG   86 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS-----------------GEEEETTEE------------EEEETTS
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc-----------------eeeeccccc------------cccccee
Confidence            45788889999999999999998877766332110                 001111221            3333445


Q ss_pred             eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCC---
Q 015363          206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL---  281 (408)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---  281 (408)
                      .+..+| ....+..  ............ .........++..++.+ .++.|..+|.++++...+. .........+   
T Consensus        87 ~l~~~d-~~tG~~~--W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~  161 (238)
T PF13360_consen   87 SLYALD-AKTGKVL--WSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY-PVGEPRGSSPISS  161 (238)
T ss_dssp             EEEEEE-TTTSCEE--EEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE-ESSTT-SS--EEE
T ss_pred             eeEecc-cCCccee--eeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe-ecCCCCCCcceee
Confidence            555555 2221111  000000000000 01111122236777777 7999999999955544332 2211000000   


Q ss_pred             cCCeEEEEEcCCCCceEEEEeCCCe-EEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC
Q 015363          282 TEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD  360 (408)
Q Consensus       282 ~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~  360 (408)
                      ...+..-....++  .+..++.++. +.+ |+.+++..      +....            ..+..+ ..+++..|+.++
T Consensus       162 ~~~~~~~~~~~~~--~v~~~~~~g~~~~~-d~~tg~~~------w~~~~------------~~~~~~-~~~~~~~l~~~~  219 (238)
T PF13360_consen  162 FSDINGSPVISDG--RVYVSSGDGRVVAV-DLATGEKL------WSKPI------------SGIYSL-PSVDGGTLYVTS  219 (238)
T ss_dssp             ETTEEEEEECCTT--EEEEECCTSSEEEE-ETTTTEEE------EEECS------------S-ECEC-EECCCTEEEEEE
T ss_pred             ecccccceEEECC--EEEEEcCCCeEEEE-ECCCCCEE------EEecC------------CCccCC-ceeeCCEEEEEe
Confidence            0111222222244  4555566664 555 99998632      21110            112221 345667777664


Q ss_pred             -CCeEEEEECCCCCCce
Q 015363          361 -YMTLKLWDINMDSGPV  376 (408)
Q Consensus       361 -d~~v~~wd~~~~~~~~  376 (408)
                       ++.|..||+++ |+.+
T Consensus       220 ~~~~l~~~d~~t-G~~~  235 (238)
T PF13360_consen  220 SDGRLYALDLKT-GKVV  235 (238)
T ss_dssp             TTTEEEEEETTT-TEEE
T ss_pred             CCCEEEEEECCC-CCEE
Confidence             79999999998 5544

...

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.01  E-value=5.8e-05  Score=68.88  Aligned_cols=120  Identities=10%  Similarity=0.132  Sum_probs=86.5

Q ss_pred             cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363          234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  312 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  312 (408)
                      ..+.--+++..+++++.| +-|.+++|+-..+.....       ...+..+.+..+..+++. .++|+|+..|.|.++.+
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-------~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql  105 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-------KNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQL  105 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-------cccCccceEEEEEecchh-HhhhhhcCCceEEeehh
Confidence            445445667788999999 899999999874332221       123345556778888888 89999999999999988


Q ss_pred             CCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCC
Q 015363          313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM  371 (408)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~  371 (408)
                      .....-  . ..+..+.       -..|...|++++|++|+..|++|++ |+|.+-.++.
T Consensus       106 ~~~~p~--~-~~~~t~~-------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  106 NKELPR--D-LDYVTPC-------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hccCCC--c-ceeeccc-------cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            764221  1 1111111       1236789999999999999999987 9999998876

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.99  E-value=0.00051  Score=63.65  Aligned_cols=250  Identities=11%  Similarity=0.096  Sum_probs=146.0

Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      -.++.|+|+  | +||.|+. ..|.+-|..+-+.++.++.+...        |.       .+.|.|....-..+.-...
T Consensus        18 ~~A~Dw~~~--G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~--------V~-------~VrWap~~~p~~llS~~~~   78 (1062)
T KOG1912|consen   18 RNAADWSPS--G-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSA--------VT-------SVRWAPAPSPRDLLSPSSS   78 (1062)
T ss_pred             ccccccCcc--c-eEEEecC-ceEEEEehhhhhhhhccccCccc--------ee-------EEEeccCCCchhccCcccc
Confidence            567889765  5 7777654 57888898888888877776532        32       5677776544333332334


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC---CCC-EEEEe-cCCeEEEEeCCCCCceee
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGE-TFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~-~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                      ...++++...|.|.+|| +...      ..+.. +..|...+..++|-+   +.+ .|++- ....+.+|+..++++..+
T Consensus        79 ~lliAsaD~~GrIil~d-~~~~------s~~~~-l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk  150 (1062)
T KOG1912|consen   79 QLLIASADISGRIILVD-FVLA------SVINW-LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK  150 (1062)
T ss_pred             ceeEEeccccCcEEEEE-ehhh------hhhhh-hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec
Confidence            45678899999999999 3221      11111 366677788888765   343 34444 789999999997776654


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc---cCCC-Cc-ccc--cccc-
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ---EAPG-TR-SFF--TEII-  341 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~-~~-~~~--~~h~-  341 (408)
                              .........|+.+.|..++.+..-+..|.+.+-+.-..+.-+.+.+.++-.   ..+. .+ .+.  ..++ 
T Consensus       151 --------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts  222 (1062)
T KOG1912|consen  151 --------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTS  222 (1062)
T ss_pred             --------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccC
Confidence                    233345567899999887777777778888777654332221111222111   0000 00 000  0000 


Q ss_pred             --------ceeEEEEEccCCCEEEE-eCCCeEEEEECCCCCCceeeeeeccc-----------ccceEEecCCCeeeee
Q 015363          342 --------ASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEH-----------LRPKVMHSSKNYFMGL  400 (408)
Q Consensus       342 --------~~i~~~~~spdg~~l~s-~~d~~v~~wd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  400 (408)
                              -....++|+|.-+.++- .-...+.++|++- ..++.+..-..+           .+..+.+++.+.++.+
T Consensus       223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~lti  300 (1062)
T KOG1912|consen  223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTI  300 (1062)
T ss_pred             CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEE
Confidence                    01224577886554443 4457899999986 466655544433           2445555555555544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.97  E-value=1.4e-05  Score=74.59  Aligned_cols=140  Identities=16%  Similarity=0.226  Sum_probs=84.2

Q ss_pred             cccccceEEEEeCCCCCEEEEe---cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe
Q 015363          230 HAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  306 (408)
Q Consensus       230 ~~~~~~v~~i~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  306 (408)
                      .+|...|+.+.-+.+|..+.+.   +.--..+|+..........       +.    .-.++.|+..- +.-+.|+....
T Consensus      1140 ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hs-------f~----ed~~vkFsn~~-q~r~~gt~~d~ 1207 (1516)
T KOG1832|consen 1140 NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHS-------FD----EDKAVKFSNSL-QFRALGTEADD 1207 (1516)
T ss_pred             cccccccccccccCCcceeeeeccccCchHHHhccccccCcccc-------cc----ccceeehhhhH-HHHHhcccccc
Confidence            6788888888888888877765   3346789999854433322       22    23578898876 55566666678


Q ss_pred             EEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeeccccc
Q 015363          307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLR  386 (408)
Q Consensus       307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~  386 (408)
                      ..+||+.++..+...   +.+...         .+-.-+.+.|+|+..+|+-  ||  .+||++.. +.++.|.......
T Consensus      1208 a~~YDvqT~~~l~ty---lt~~~~---------~~y~~n~a~FsP~D~LIln--dG--vLWDvR~~-~aIh~FD~ft~~~ 1270 (1516)
T KOG1832|consen 1208 ALLYDVQTCSPLQTY---LTDTVT---------SSYSNNLAHFSPCDTLILN--DG--VLWDVRIP-EAIHRFDQFTDYG 1270 (1516)
T ss_pred             eEEEecccCcHHHHh---cCcchh---------hhhhccccccCCCcceEee--Cc--eeeeeccH-HHHhhhhhheecc
Confidence            999999999766321   222110         0112256778887776652  22  36888763 5566555544333


Q ss_pred             ceEEecCCCeee
Q 015363          387 PKVMHSSKNYFM  398 (408)
Q Consensus       387 ~~~~~~~~~~~~  398 (408)
                      ....+++.++++
T Consensus      1271 ~G~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1271 GGGFHPSGNEVI 1282 (1516)
T ss_pred             cccccCCCceEE
Confidence            344444444443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.93  E-value=0.0014  Score=59.26  Aligned_cols=202  Identities=15%  Similarity=0.144  Sum_probs=112.7

Q ss_pred             cceeEEEEeecCCCcEEEEEe---CC-CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          113 EKINKIRWCQSANSALYLLST---ND-KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~---~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      ..+..-+|+|+  +..++..+   .. ..+.++++.+++...+........                ...|+|||+.+  
T Consensus       193 ~~~~~p~ws~~--~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~----------------~P~fspDG~~l--  252 (425)
T COG0823         193 SLILTPAWSPD--GKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG----------------APAFSPDGSKL--  252 (425)
T ss_pred             cceeccccCcC--CCceEEEEEecCCCceEEEEeccCCccceeeccCCccC----------------CccCCCCCCEE--
Confidence            44677788765  55554442   33 469999999988777766543321                46899999887  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCe--EEEEeCCCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR--INLWNLEIS  264 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~--i~iwd~~~~  264 (408)
                               +++...++...+|- ..- ....    ...+ ....+.-..-.|+|||+.++-.  ..|.  |.+++.+. 
T Consensus       253 ---------~f~~~rdg~~~iy~-~dl-~~~~----~~~L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g-  315 (425)
T COG0823         253 ---------AFSSSRDGSPDIYL-MDL-DGKN----LPRL-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG-  315 (425)
T ss_pred             ---------EEEECCCCCccEEE-EcC-CCCc----ceec-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC-
Confidence                     57777777766654 211 1111    1111 2222222366899999988865  3444  55556652 


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CCe--EEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGS--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                      ... ..+     +...  ..-....|+|+| .+++..+. +|.  |.+.|+.++...    +.+...             
T Consensus       316 ~~~-~ri-----T~~~--~~~~~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~~~~----~~lt~~-------------  369 (425)
T COG0823         316 SQV-TRL-----TFSG--GGNSNPVWSPDG-DKIVFESSSGGQWDIDKNDLASGGKI----RILTST-------------  369 (425)
T ss_pred             Cce-eEe-----eccC--CCCcCccCCCCC-CEEEEEeccCCceeeEEeccCCCCcE----EEcccc-------------
Confidence            222 221     1222  222278999999 66665553 354  666666655421    222222             


Q ss_pred             ceeEEEEEccCCCEEEEeCC--CeEEEEECCCCCCcee
Q 015363          342 ASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVA  377 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~s~~d--~~v~~wd~~~~~~~~~  377 (408)
                      .....-+|.|+|+.+...+.  +.=.++.+...++..+
T Consensus       370 ~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~  407 (425)
T COG0823         370 YLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR  407 (425)
T ss_pred             ccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence            22345678899988876532  3334444444344443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.00028  Score=65.57  Aligned_cols=139  Identities=17%  Similarity=0.154  Sum_probs=92.8

Q ss_pred             ccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCC
Q 015363          198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA  276 (408)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  276 (408)
                      ++-|+..|.|++++ ...       .+ +.. ..|...      ..+|.+++++ .||+|.|..+.+.+.... ++    
T Consensus        52 ~~~GtH~g~v~~~~-~~~-------~~-~~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~-~d----  110 (846)
T KOG2066|consen   52 FALGTHRGAVYLTT-CQG-------NP-KTN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ-YD----  110 (846)
T ss_pred             eeeccccceEEEEe-cCC-------cc-ccc-cccccc------ccCCceEEEecCCCcEEEeeccCCcccee-Ee----
Confidence            47788889999877 211       11 110 122211      5679999999 999999999885554432 21    


Q ss_pred             cccCCcCCeEEEEEcCC----CCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363          277 NMEDLTEVITSAEFHPT----HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  352 (408)
Q Consensus       277 ~~~~~~~~v~~~~~~p~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd  352 (408)
                          -..++.+++++|+    ..+.+++|+..| +.++.-+-....    .....++.          .++|.++.|.  
T Consensus       111 ----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk----~~v~l~~~----------eG~I~~i~W~--  169 (846)
T KOG2066|consen  111 ----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK----DSVVLSEG----------EGPIHSIKWR--  169 (846)
T ss_pred             ----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----cceeeecC----------ccceEEEEec--
Confidence                2566889999998    236899999888 878765433221    11122221          3789999995  


Q ss_pred             CCEEEEeCCCeEEEEECCCCCCceeee
Q 015363          353 GRHILSRDYMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       353 g~~l~s~~d~~v~~wd~~~~~~~~~~~  379 (408)
                      |.+||-++|-.|++||+.+ ++.+-.+
T Consensus       170 g~lIAWand~Gv~vyd~~~-~~~l~~i  195 (846)
T KOG2066|consen  170 GNLIAWANDDGVKVYDTPT-RQRLTNI  195 (846)
T ss_pred             CcEEEEecCCCcEEEeccc-cceeecc
Confidence            8899999988899999987 4444444

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.85  E-value=0.014  Score=49.99  Aligned_cols=263  Identities=12%  Similarity=0.119  Sum_probs=126.5

Q ss_pred             eEEEEECCCCCeEEEee----------cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           38 ISAIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      .-.+..+|+++.+++++          +.-.|.+||..+....    .+++       ..+..+....            
T Consensus        38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~----~EI~-------iP~k~R~~~~------------   94 (342)
T PF06433_consen   38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT----GEIE-------IPPKPRAQVV------------   94 (342)
T ss_dssp             SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE----EEEE-------ETTS-B--BS------------
T ss_pred             CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc----ceEe-------cCCcchheec------------
Confidence            34567899999888753          3458999998876421    0000       0000011000            


Q ss_pred             ccccccceeEEEEeecCCCcEEEEE--eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC-C
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG-G  184 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~  184 (408)
                           .......++  .+|+++++.  +--..|.|-|+..++...........                   ..-|.+ .
T Consensus        95 -----~~~~~~~ls--~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~-------------------~iyP~~~~  148 (342)
T PF06433_consen   95 -----PYKNMFALS--ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCW-------------------LIYPSGNR  148 (342)
T ss_dssp             -------GGGEEE---TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEE-------------------EEEEEETT
T ss_pred             -----ccccceEEc--cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEE-------------------EEEecCCC
Confidence                 112234553  456676664  34557888888888887766664321                   111111 1


Q ss_pred             eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEecCCeEEEEeCCC
Q 015363          185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNLEI  263 (408)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~d~~i~iwd~~~  263 (408)
                      .+            .+-..||.+.-.. +.. ++....+....+....+..+..-++... +.++....+|.|+--|+..
T Consensus       149 ~F------------~~lC~DGsl~~v~-Ld~-~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg  214 (342)
T PF06433_consen  149 GF------------SMLCGDGSLLTVT-LDA-DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSG  214 (342)
T ss_dssp             EE------------EEEETTSCEEEEE-ETS-TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETT
T ss_pred             ce------------EEEecCCceEEEE-ECC-CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccC
Confidence            11            3334455444433 221 1111111112221222222223333333 3455566788888888873


Q ss_pred             CCcee-eEeecCC-Cc--ccCCcCCeEEEEEcCCCCceEEEEeCC----------CeEEEEEcCCCceeccccccccccc
Q 015363          264 SNQSF-NIVDVKP-AN--MEDLTEVITSAEFHPTHCNMLAYSSSK----------GSIRLIDMRQSALCDTHSKLFEEQE  329 (408)
Q Consensus       264 ~~~~~-~~~~~~~-~~--~~~~~~~v~~~~~~p~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~  329 (408)
                      ..... ...++-. ..  -....+.-.-+++++.. ..|.+--..          ..|.++|+.+++.+    ..+... 
T Consensus       215 ~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv----~Ri~l~-  288 (342)
T PF06433_consen  215 DSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV----ARIPLE-  288 (342)
T ss_dssp             SSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT-TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE----EEEEEE-
T ss_pred             CcccccCcccccCccccccCcCCcceeeeeecccc-CeEEEEecCCCCCCccCCceEEEEEECCCCeEE----EEEeCC-
Confidence            33211 1111100 00  00011222347777655 333333221          25888899998766    344332 


Q ss_pred             CCCCccccccccceeEEEEEccCCC-EEEEe--CCCeEEEEECCCCCCceeeeeec
Q 015363          330 APGTRSFFTEIIASISDIKFARNGR-HILSR--DYMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       330 ~~~~~~~~~~h~~~i~~~~~spdg~-~l~s~--~d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                                  ..+.+|..+.|.+ +|++.  .++.+.+||..+ |+.++++.+-
T Consensus       289 ------------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t-Gk~~~~~~~l  331 (342)
T PF06433_consen  289 ------------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT-GKLVRSIEQL  331 (342)
T ss_dssp             ------------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE---
T ss_pred             ------------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC-CcEEeehhcc
Confidence                        3577899998776 55543  468999999998 7999888754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.80  E-value=0.018  Score=51.32  Aligned_cols=247  Identities=12%  Similarity=0.145  Sum_probs=116.5

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccC-CCCCeEee--cCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA-GNGPIFGS--HVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~--~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..+....|+|+  |+.++... ++.|.+++..++...++.... ...... -...++.-  -.....++|+||++.+..+
T Consensus        43 ~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~  118 (353)
T PF00930_consen   43 PKLQDAKWSPD--GKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL  118 (353)
T ss_dssp             TTBSEEEE-SS--STEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred             cccccceeecC--CCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence            55888999876  77887764 678999998887555443322 110000 00001100  0223478999999988654


Q ss_pred             cccccC----------------------ccccCCCCCceeeecee-eeccccccccccceeeccccccceEEEEeCCCCC
Q 015363          190 FGCASN----------------------DSSFPPGGVSSLRLPVV-VTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE  246 (408)
Q Consensus       190 ~~~~~~----------------------~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  246 (408)
                      ......                      .+-..|..+..+.++-+ +...+......+ .. .......+..+.|.+++.
T Consensus       119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~-~~-~~~~~~yl~~v~W~~d~~  196 (353)
T PF00930_consen  119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPP-NS-LNPQDYYLTRVGWSPDGK  196 (353)
T ss_dssp             EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE----HH-HHTSSEEEEEEEEEETTE
T ss_pred             EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeec-cc-cCCCccCcccceecCCCc
Confidence            221110                      11233455555555330 222111110000 00 123345688999999998


Q ss_pred             EEE-Ee---c--CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEc-CCCCceEEEEeCCCe--EEEEEcCCCce
Q 015363          247 TFI-SA---D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGS--IRLIDMRQSAL  317 (408)
Q Consensus       247 ~l~-~~---~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~--i~iwd~~~~~~  317 (408)
                      .|+ .-   .  ...+.++|..++...........    +--..-....|. +++..++.....||.  |.+++...+..
T Consensus       197 ~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~----~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~  272 (353)
T PF00930_consen  197 RLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD----GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP  272 (353)
T ss_dssp             EEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS----SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE
T ss_pred             EEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC----cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce
Confidence            444 32   2  23455667764333322211111    111111244554 676566666667775  44455554432


Q ss_pred             ecccccccccccCCCCccccccccceeEE-EEEccCCCEEE-EeC--C-CeEEEEECCCC-CCceeeeeeccccc
Q 015363          318 CDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHIL-SRD--Y-MTLKLWDINMD-SGPVATFQVHEHLR  386 (408)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~spdg~~l~-s~~--d-~~v~~wd~~~~-~~~~~~~~~~~~~~  386 (408)
                           +.+...            .-.|.. +.|+++++.|+ ++.  + ..-.||.++.. +..++.+....+.-
T Consensus       273 -----~~lT~G------------~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~  330 (353)
T PF00930_consen  273 -----RQLTSG------------DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH  330 (353)
T ss_dssp             -----EESS-S------------SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT
T ss_pred             -----eccccC------------ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc
Confidence                 222211            134544 67888877554 442  2 55566655554 55666666554443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.80  E-value=0.0028  Score=60.88  Aligned_cols=153  Identities=15%  Similarity=0.172  Sum_probs=91.9

Q ss_pred             CcEEEEE-eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCC
Q 015363          126 SALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV  204 (408)
Q Consensus       126 ~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  204 (408)
                      ..+|+.. .....|+-.|++.|+.+.....+...       .         ...+.|+.+.-..    + ..-.+.|-.+
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-------~---------v~~~~p~~K~aql----t-~e~tflGls~  551 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-------P---------VVDIAPDSKFAQL----T-NEQTFLGLSD  551 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCc-------c---------eeEeccccccccc----C-CCceEEEECC
Confidence            3344443 35678889999999998877776532       1         1344444332100    0 0112666677


Q ss_pred             ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcC
Q 015363          205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE  283 (408)
Q Consensus       205 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  283 (408)
                      ..+..|| .+-..........+.+  .....++|++-+.+|. +|+| .+|.||+||-- +.+...       .+++...
T Consensus       552 n~lfriD-pR~~~~k~v~~~~k~Y--~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~~-g~~AKT-------~lp~lG~  619 (794)
T PF08553_consen  552 NSLFRID-PRLSGNKLVDSQSKQY--SSKNNFSCFATTEDGY-IAVGSNKGDIRLYDRL-GKRAKT-------ALPGLGD  619 (794)
T ss_pred             CceEEec-cCCCCCceeecccccc--ccCCCceEEEecCCce-EEEEeCCCcEEeeccc-chhhhh-------cCCCCCC
Confidence            7777777 4322111111111111  3345688888888875 5555 99999999954 333222       2677789


Q ss_pred             CeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363          284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       284 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  313 (408)
                      +|..|..+.|| +++++.+ +..|.|++..
T Consensus       620 pI~~iDvt~DG-kwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  620 PIIGIDVTADG-KWILATC-KTYLLLIDTL  647 (794)
T ss_pred             CeeEEEecCCC-cEEEEee-cceEEEEEEe
Confidence            99999999999 6666544 5678888763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.79  E-value=0.0017  Score=61.05  Aligned_cols=111  Identities=15%  Similarity=0.193  Sum_probs=77.9

Q ss_pred             ccceEE-EEECCCCCeEEEee----cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           35 VDIISA-IEFDKSGDHLATGD----RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        35 ~~~V~~-~~~s~~~~~l~sg~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .+.|.. ..|+|...++|+++    +.|.|.||-- +++..                   -..  ++.            
T Consensus        14 sdavsti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPq-------------------r~V--t~P------------   59 (1416)
T KOG3617|consen   14 SDAVSTISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQ-------------------RDV--TYP------------   59 (1416)
T ss_pred             ccccccccccCCCCceeEEEEecCCCCceEEEEec-CCCCC-------------------ccc--ccc------------
Confidence            344444 57999999999887    4688988853 33211                   000  111            


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         -.+++++|+|.  .-.|+.|-.-|.+.+|...+.+...+...+..+        +.       .+.|+++|.++   
T Consensus        60 ---~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~--------i~-------~l~wS~~G~~l---  116 (1416)
T KOG3617|consen   60 ---VHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAP--------IQ-------GLDWSHDGTVL---  116 (1416)
T ss_pred             ---eehhhhccChH--HHHHhhccccceeEEEecCCceeeeeccCCCCC--------ce-------eEEecCCCCeE---
Confidence               23678999876  446777888899999999887765554444332        22       58999999998   


Q ss_pred             cccccCccccCCCCCceeeece
Q 015363          190 FGCASNDSSFPPGGVSSLRLPV  211 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~  211 (408)
                               +++..-|.+.+|.
T Consensus       117 ---------~t~d~~g~v~lwr  129 (1416)
T KOG3617|consen  117 ---------MTLDNPGSVHLWR  129 (1416)
T ss_pred             ---------EEcCCCceeEEEE
Confidence                     9999999999998

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.0002  Score=61.09  Aligned_cols=79  Identities=18%  Similarity=0.131  Sum_probs=63.9

Q ss_pred             ccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe
Q 015363          229 AHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  306 (408)
Q Consensus       229 ~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  306 (408)
                      +..+...|++++|+|..+ ++..+ -+..|+|.|+++.. ....       +..+ ..+++++|.-+...++.+|-..|.
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vss-------y~a~-~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSS-------YIAY-NQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeh-------eecc-CCceeeeeccCCcceeEEeccCce
Confidence            578888999999999987 45556 79999999999443 3332       3344 778999999998788899999999


Q ss_pred             EEEEEcCCCc
Q 015363          307 IRLIDMRQSA  316 (408)
Q Consensus       307 i~iwd~~~~~  316 (408)
                      |.+||++..+
T Consensus       260 VlvyD~R~~~  269 (463)
T KOG1645|consen  260 VLVYDMRQPE  269 (463)
T ss_pred             EEEEEccCCC
Confidence            9999999764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.74  E-value=0.00082  Score=61.70  Aligned_cols=207  Identities=12%  Similarity=0.134  Sum_probs=119.8

Q ss_pred             CCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCC
Q 015363          124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG  203 (408)
Q Consensus       124 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  203 (408)
                      ..+++++.|+.-|.+.+++-..++.......-.       .+.+.       ....+++...+            +.|+.
T Consensus        43 st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~-------~~~~~-------~~~vs~~e~lv------------Aagt~   96 (726)
T KOG3621|consen   43 ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGA-------TGITC-------VRSVSSVEYLV------------AAGTA   96 (726)
T ss_pred             cCCceEEEecccceEEEEecCchhhhcccccCc-------cceEE-------EEEecchhHhh------------hhhcC
Confidence            447799999999999999988876544322111       11222       45666666665            88888


Q ss_pred             CceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCc
Q 015363          204 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT  282 (408)
Q Consensus       204 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  282 (408)
                      .|.|.++. +.. ...............|...|++++|++++..+.+| ..|+|.+-.+... ....   .+...+..-.
T Consensus        97 ~g~V~v~q-l~~-~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~---~~~q~il~~d  170 (726)
T KOG3621|consen   97 SGRVSVFQ-LNK-ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFL---SKSQEILSED  170 (726)
T ss_pred             CceEEeeh-hhc-cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhc---cccceeeccC
Confidence            88888877 443 22222222223335578899999999999999999 8999998888741 1111   1111223335


Q ss_pred             CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccc-eeEEEEEcc-----CCCEE
Q 015363          283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA-SISDIKFAR-----NGRHI  356 (408)
Q Consensus       283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~sp-----dg~~l  356 (408)
                      ..|-.+.+...  .+|++...  +-.++++..+..     +.+-.. ..         .+ .-...+|-|     +..+|
T Consensus       171 s~IVQlD~~q~--~LLVStl~--r~~Lc~tE~eti-----~QIG~k-~R---------~~~~~~GACF~~g~~~~q~~~I  231 (726)
T KOG3621|consen  171 SEIVQLDYLQS--YLLVSTLT--RCILCQTEAETI-----TQIGKK-PR---------KSLIDFGACFFPGQCKAQKPQI  231 (726)
T ss_pred             cceEEeecccc--eehHhhhh--hhheeecchhHH-----HHhcCC-Cc---------CCccccceEEeeccccCCCceE
Confidence            66666666532  44544332  234555554421     111111 10         01 012233433     33456


Q ss_pred             EEeCCCeEEEEECCCCCCceeeeeec
Q 015363          357 LSRDYMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       357 ~s~~d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      +++.- ..++|.++..|..+++..-.
T Consensus       232 ycaRP-G~RlWead~~G~V~~Thqfk  256 (726)
T KOG3621|consen  232 YCARP-GLRLWEADFAGEVIKTHQFK  256 (726)
T ss_pred             EEecC-CCceEEeecceeEEEeeehh
Confidence            66543 56789888777777766543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.72  E-value=0.017  Score=46.87  Aligned_cols=71  Identities=13%  Similarity=0.107  Sum_probs=48.2

Q ss_pred             CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCC
Q 015363           47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS  126 (408)
Q Consensus        47 ~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~  126 (408)
                      |++++.|++.|.+.+.+.+++...                       ..+..-             +.|.+-+-. +.++
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~-----------------------w~f~~~-------------~~vk~~a~~-d~~~  105 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQI-----------------------WNFVIL-------------ETVKVRAQC-DFDG  105 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhhe-----------------------eeeeeh-------------hhhccceEE-cCCC
Confidence            667889999999999999888532                       122211             112221111 3457


Q ss_pred             cEEEEEeCCCeEEEEEcCCCcEEEEecc
Q 015363          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDW  154 (408)
Q Consensus       127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~  154 (408)
                      .++..++.|++.+..|..+..++...+-
T Consensus       106 glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen  106 GLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             ceEEEecCCCcEEEecccccceEEeccc
Confidence            7999999999999999998877665443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.70  E-value=0.00029  Score=65.89  Aligned_cols=109  Identities=8%  Similarity=0.218  Sum_probs=76.1

Q ss_pred             eEEEEeecCCCcEEEEEe----CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          116 NKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      +-..|+|..+  +|++++    +.|.|.|+- ++|+...-...+           +.+.     +++|+|..-.+     
T Consensus        19 ti~SWHPseP--lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P-----------~hat-----SLCWHpe~~vL-----   74 (1416)
T KOG3617|consen   19 TISSWHPSEP--LFAVASFSPERGGSVTIFA-DTGEPQRDVTYP-----------VHAT-----SLCWHPEEFVL-----   74 (1416)
T ss_pred             cccccCCCCc--eeEEEEecCCCCceEEEEe-cCCCCCcccccc-----------eehh-----hhccChHHHHH-----
Confidence            4467988755  888775    567787773 344432222111           1111     58999988776     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI  263 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~  263 (408)
                             +.|-+.|.+.+|. ....       ...+....|..+|..+.|+|+|..+.++ .-|.|.+|....
T Consensus        75 -------a~gwe~g~~~v~~-~~~~-------e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   75 -------AQGWEMGVSDVQK-TNTT-------ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             -------hhccccceeEEEe-cCCc-------eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence                   8898999999987 2221       1122246788999999999999999999 899999998873

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.69  E-value=0.0043  Score=57.56  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=54.4

Q ss_pred             cceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCC-----CcccCCcCCeEEEEEcCCCCceEEEEeCCCe
Q 015363          234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP-----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  306 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  306 (408)
                      .....++++|||++++++  -+.+|.++|+...+..+.- ++++     .+..- .......+|.++| ..+.+---|..
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~-~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsq  397 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG-KIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQ  397 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc-cCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecce
Confidence            456789999999998876  6999999999854432100 0000     00111 2233568999999 88888888999


Q ss_pred             EEEEEcCC
Q 015363          307 IRLIDMRQ  314 (408)
Q Consensus       307 i~iwd~~~  314 (408)
                      |..||+..
T Consensus       398 v~kwn~~~  405 (635)
T PRK02888        398 IVKWNIEA  405 (635)
T ss_pred             eEEEehHH
Confidence            99999886

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.67  E-value=0.015  Score=52.77  Aligned_cols=29  Identities=3%  Similarity=0.013  Sum_probs=23.4

Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEecc
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDW  154 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  154 (408)
                      +..++.++.++.+..+|.++++.......
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~  148 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV  148 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence            44777888999999999999987776554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.65  E-value=0.0083  Score=49.78  Aligned_cols=201  Identities=11%  Similarity=0.120  Sum_probs=98.8

Q ss_pred             eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL  254 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~  254 (408)
                      .++|.|+...+           +++....+.|..++ .   +    ++.++.+........-.|++..++.++++. .++
T Consensus        26 GLTy~pd~~tL-----------faV~d~~~~i~els-~---~----G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~   86 (248)
T PF06977_consen   26 GLTYNPDTGTL-----------FAVQDEPGEIYELS-L---D----GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQ   86 (248)
T ss_dssp             EEEEETTTTEE-----------EEEETTTTEEEEEE-T---T------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTT
T ss_pred             ccEEcCCCCeE-----------EEEECCCCEEEEEc-C---C----CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCC
Confidence            68999987766           24455566665544 1   1    122222211223457788888888777777 799


Q ss_pred             eEEEEeCCCCCceeeEee---cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC--C-cee-ccccccccc
Q 015363          255 RINLWNLEISNQSFNIVD---VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--S-ALC-DTHSKLFEE  327 (408)
Q Consensus       255 ~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~-~~~-~~~~~~~~~  327 (408)
                      .+.++++...........   +.......++..+-.++|+|.+ +.|+.+-...-..||.++.  . ... ......+..
T Consensus        87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~  165 (248)
T PF06977_consen   87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD  165 (248)
T ss_dssp             EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred             cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeecccccccc
Confidence            999999853332222111   1100112345668899999998 5555666666667777654  1 110 000001110


Q ss_pred             ccCCCCccccccccceeEEEEEccCC-CEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeeceee
Q 015363          328 QEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHT  405 (408)
Q Consensus       328 ~~~~~~~~~~~~h~~~i~~~~~spdg-~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  405 (408)
                      .         ......+.+++++|.. .+++-++ ...|..+|.  .|+++..+.-..+..-....+-+.+=|++|..++
T Consensus       166 ~---------~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~--~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~  234 (248)
T PF06977_consen  166 D---------KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR--QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN  234 (248)
T ss_dssp             H---------T--SS---EEEEETTTTEEEEEETTTTEEEEE-T--T--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred             c---------cceeccccceEEcCCCCeEEEEECCCCeEEEECC--CCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence            0         0112457889999964 4444444 489999995  3788887766554332222355677888888888


Q ss_pred             ec
Q 015363          406 LY  407 (408)
Q Consensus       406 ~~  407 (408)
                      ||
T Consensus       235 LY  236 (248)
T PF06977_consen  235 LY  236 (248)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.63  E-value=0.028  Score=46.95  Aligned_cols=144  Identities=13%  Similarity=0.055  Sum_probs=75.1

Q ss_pred             CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceee
Q 015363          134 NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVV  213 (408)
Q Consensus       134 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  213 (408)
                      .+|+|..||..+++.+.........     . ..        .....+++..+            ++++.++.+..|| .
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~-----~-~~--------~~~~~~~~~~v------------~~~~~~~~l~~~d-~   53 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGI-----G-GP--------VATAVPDGGRV------------YVASGDGNLYALD-A   53 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSC-----S-SE--------EETEEEETTEE------------EEEETTSEEEEEE-T
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCC-----C-Cc--------cceEEEeCCEE------------EEEcCCCEEEEEE-C
Confidence            3688999999999888776552211     0 00        01122234443            5556778888877 3


Q ss_pred             eccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcC
Q 015363          214 TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP  292 (408)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  292 (408)
                      ...+..-...+     .......   ... .+..++.+ .++.+..+|..+++...+.....   ..... ....+....
T Consensus        54 ~tG~~~W~~~~-----~~~~~~~---~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~  120 (238)
T PF13360_consen   54 KTGKVLWRFDL-----PGPISGA---PVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPAV  120 (238)
T ss_dssp             TTSEEEEEEEC-----SSCGGSG---EEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEEE
T ss_pred             CCCCEEEEeec-----cccccce---eee-cccccccccceeeeEecccCCcceeeeecccc---ccccc-cccccCceE
Confidence            22211111110     0000001   111 23444444 77899999988666665532211   01111 111222222


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          293 THCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       293 ~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      .+ ..++++..++.|..+|+++|+.+
T Consensus       121 ~~-~~~~~~~~~g~l~~~d~~tG~~~  145 (238)
T PF13360_consen  121 DG-DRLYVGTSSGKLVALDPKTGKLL  145 (238)
T ss_dssp             ET-TEEEEEETCSEEEEEETTTTEEE
T ss_pred             ec-CEEEEEeccCcEEEEecCCCcEE
Confidence            25 67788888999999999999765

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.62  E-value=0.0066  Score=55.12  Aligned_cols=138  Identities=13%  Similarity=0.087  Sum_probs=74.0

Q ss_pred             ceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c
Q 015363          174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D  252 (408)
Q Consensus       174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~  252 (408)
                      +..+.++|+|+.+            +. ..+|...+|. .         ...+   ....+.-..++|.+.+ .+|+- .
T Consensus        35 p~~ls~npngr~v------------~V-~g~geY~iyt-~---------~~~r---~k~~G~g~~~vw~~~n-~yAv~~~   87 (443)
T PF04053_consen   35 PQSLSHNPNGRFV------------LV-CGDGEYEIYT-A---------LAWR---NKAFGSGLSFVWSSRN-RYAVLES   87 (443)
T ss_dssp             -SEEEE-TTSSEE------------EE-EETTEEEEEE-T---------TTTE---EEEEEE-SEEEE-TSS-EEEEE-T
T ss_pred             CeeEEECCCCCEE------------EE-EcCCEEEEEE-c---------cCCc---ccccCceeEEEEecCc-cEEEEEC
Confidence            3478999999986            33 5566666554 1         0000   1112445567898855 46666 7


Q ss_pred             CCeEEEE-eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363          253 DLRINLW-NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  331 (408)
Q Consensus       253 d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  331 (408)
                      ..+|.++ +.. .... ..       +.. ...+..+-.   | .+|+..+.+ .|.+||..+++.+    +.+..    
T Consensus        88 ~~~I~I~kn~~-~~~~-k~-------i~~-~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i----~~i~v----  144 (443)
T PF04053_consen   88 SSTIKIYKNFK-NEVV-KS-------IKL-PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLI----RRIDV----  144 (443)
T ss_dssp             TS-EEEEETTE-E-TT--------------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EE----EEESS----
T ss_pred             CCeEEEEEcCc-cccc-eE-------EcC-CcccceEEc---C-cEEEEECCC-CEEEEEhhHccee----eEEec----
Confidence            8889996 443 2221 11       111 112333332   7 777776544 8999999998765    33332    


Q ss_pred             CCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363          332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~  371 (408)
                                ..|..+.|+++|.+++-.++..+.+.+.+.
T Consensus       145 ----------~~vk~V~Ws~~g~~val~t~~~i~il~~~~  174 (443)
T PF04053_consen  145 ----------SAVKYVIWSDDGELVALVTKDSIYILKYNL  174 (443)
T ss_dssp             -----------E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred             ----------CCCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence                      248999999999999988777888888754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.58  E-value=0.0067  Score=54.06  Aligned_cols=33  Identities=9%  Similarity=0.109  Sum_probs=26.2

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCC
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR   68 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~   68 (408)
                      ...+....|||+|+.+|... ++.|.+++..++.
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~   74 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ   74 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence            46788999999999998885 5789999876653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.55  E-value=0.012  Score=53.52  Aligned_cols=219  Identities=11%  Similarity=0.119  Sum_probs=99.8

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      .....+.++|+  |.++++ ..||...++.....+....-..                    ....|.+.+++       
T Consensus        33 ~~p~~ls~npn--gr~v~V-~g~geY~iyt~~~~r~k~~G~g--------------------~~~vw~~~n~y-------   82 (443)
T PF04053_consen   33 IYPQSLSHNPN--GRFVLV-CGDGEYEIYTALAWRNKAFGSG--------------------LSFVWSSRNRY-------   82 (443)
T ss_dssp             S--SEEEE-TT--SSEEEE-EETTEEEEEETTTTEEEEEEE---------------------SEEEE-TSSEE-------
T ss_pred             cCCeeEEECCC--CCEEEE-EcCCEEEEEEccCCcccccCce--------------------eEEEEecCccE-------
Confidence            34778889654  877777 6677777877444333322111                    14677776665       


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEee
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~  272 (408)
                            ++-...+.|.++.-+....       .+.+...  ..+..|-.   |.+|....++.|.+||+.+ ++.+..++
T Consensus        83 ------Av~~~~~~I~I~kn~~~~~-------~k~i~~~--~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~  143 (443)
T PF04053_consen   83 ------AVLESSSTIKIYKNFKNEV-------VKSIKLP--FSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRID  143 (443)
T ss_dssp             ------EEE-TTS-EEEEETTEE-T-------T-----S--S-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEES
T ss_pred             ------EEEECCCeEEEEEcCcccc-------ceEEcCC--cccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEe
Confidence                  4444466777643011111       0011011  12333322   8888777666999999994 44544332


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCc---cccccccceeEEEEE
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR---SFFTEIIASISDIKF  349 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~i~~~~~  349 (408)
                               -..|..+.|++++ .++|..+.+ .+.|++.......     .   ....+..   ....+....|.+.+|
T Consensus       144 ---------v~~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~-----~---~~~~g~e~~f~~~~E~~~~IkSg~W  204 (443)
T PF04053_consen  144 ---------VSAVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVA-----A---IPEEGVEDAFELIHEISERIKSGCW  204 (443)
T ss_dssp             ---------S-E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHH-----H---BTTTB-GGGEEEEEEE-S--SEEEE
T ss_pred             ---------cCCCcEEEEECCC-CEEEEEeCC-eEEEEEecchhcc-----c---ccccCchhceEEEEEecceeEEEEE
Confidence                     2237899999999 888877644 6777765533000     0   0000000   001111357889999


Q ss_pred             ccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCC--Ceeeeeeceeee
Q 015363          350 ARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSK--NYFMGLDNIHTL  406 (408)
Q Consensus       350 spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~  406 (408)
                      ..| -+|.+... .++.+=-. +...++.+..    ..-+.....  +.+..+||..++
T Consensus       205 ~~d-~fiYtT~~-~lkYl~~G-e~~~i~~ld~----~~yllgy~~~~~~ly~~Dr~~~v  256 (443)
T PF04053_consen  205 VED-CFIYTTSN-HLKYLVNG-ETGIIAHLDK----PLYLLGYLPKENRLYLIDRDGNV  256 (443)
T ss_dssp             ETT-EEEEE-TT-EEEEEETT-EEEEEEE-SS------EEEEEETTTTEEEEE-TT--E
T ss_pred             EcC-EEEEEcCC-eEEEEEcC-CcceEEEcCC----ceEEEEEEccCCEEEEEECCCCE
Confidence            876 55666555 77773221 1122333322    222222233  677788886654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00320 WD40 WD40 repeats

Probab=97.52  E-value=0.00017  Score=40.15  Aligned_cols=31  Identities=19%  Similarity=0.483  Sum_probs=28.8

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEE
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFE   63 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~   63 (408)
                      .|.+.|.++.|++++.++++++.|+.+++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            5788999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.52  E-value=0.0037  Score=59.35  Aligned_cols=159  Identities=8%  Similarity=0.041  Sum_probs=98.2

Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      |+-++.    |+..+.+|...|+|.+-|..+.+.+..+..|...                 -..|.-.|..+.+ .|++-
T Consensus       180 v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-----------------iSDfDv~GNlLit-CG~S~  237 (1118)
T KOG1275|consen  180 VTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-----------------ISDFDVQGNLLIT-CGYSM  237 (1118)
T ss_pred             eEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccc-----------------eeeeeccCCeEEE-eeccc
Confidence            555554    4678999999999999999999988888777543                 2345555555411 11111


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCce-eeEe
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS-FNIV  271 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~-~~~~  271 (408)
                      ..  ..-..|.-|++|| ++........       .-+.+ ..-+.|+|.- ..++++ ..|...+-|..+.... ..+.
T Consensus       238 R~--~~l~~D~FvkVYD-LRmmral~PI-------~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~  306 (1118)
T KOG1275|consen  238 RR--YNLAMDPFVKVYD-LRMMRALSPI-------QFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK  306 (1118)
T ss_pred             cc--ccccccchhhhhh-hhhhhccCCc-------ccccC-chhhhhcccccceEEEEecccceeeccccccCCCcccee
Confidence            10  1113467789999 6554332211       11111 2345677763 445555 8899999884322221 1111


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  312 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  312 (408)
                      -     .......+..+.+++++ +.+|.|..+|.|.+|--
T Consensus       307 ~-----v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  307 M-----VNPNGSGISAFDISSNG-DALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             E-----EccCCCcceeEEecCCC-ceEEEecccCcEeeecC
Confidence            1     22334558999999999 99999999999999973

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.00077  Score=61.07  Aligned_cols=75  Identities=20%  Similarity=0.259  Sum_probs=61.9

Q ss_pred             cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE-EEEEcCCCCceEEEEeCCCeEEEEE
Q 015363          234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLID  311 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd  311 (408)
                      ..+.-+.|+|.-.++|.+ .+|.|.+..++ ..+...        ++-+...++ +++|.||| ++||.|-.||+|++-|
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt--------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT--------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD   90 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEe--------ccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence            457778999999999999 89999999888 554443        343455555 99999999 9999999999999999


Q ss_pred             cCCCcee
Q 015363          312 MRQSALC  318 (408)
Q Consensus       312 ~~~~~~~  318 (408)
                      +.++..+
T Consensus        91 ve~~~~l   97 (665)
T KOG4640|consen   91 VEKGGRL   97 (665)
T ss_pred             ccCCCce
Confidence            9998654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.48  E-value=0.0048  Score=59.36  Aligned_cols=103  Identities=18%  Similarity=0.168  Sum_probs=71.7

Q ss_pred             EEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccc
Q 015363          247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF  325 (408)
Q Consensus       247 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  325 (408)
                      .-+.| ++..+..||.+..+..+.  ......+ .......|++-..+|  +||+|+.+|.||+||- .+...   -..+
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v--~~~~k~Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~A---KT~l  614 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLV--DSQSKQY-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRA---KTAL  614 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCcee--ecccccc-ccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhh---hhcC
Confidence            34556 899999999996543211  1000112 234557888888888  8999999999999993 33221   0222


Q ss_pred             ccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECC
Q 015363          326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN  370 (408)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~  370 (408)
                      +            +...+|..|..+.||+||++..+..+.|++..
T Consensus       615 p------------~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  615 P------------GLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             C------------CCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence            2            22478999999999999998888889998864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.46  E-value=9.9e-05  Score=66.69  Aligned_cols=209  Identities=13%  Similarity=0.127  Sum_probs=121.8

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-EE-eccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      ..+.|+++.-+.+...+++|..+|.|-+-.++...-. .. ...+.               ..+.+++|++-....    
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a---------------r~Ct~lAwneLDtn~----  117 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYA---------------RPCTSLAWNELDTNH----  117 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccc---------------ccccccccccccHHH----
Confidence            6688888875555457888889999999887754322 00 00000               111245666542221    


Q ss_pred             ccccCccccCC----CCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363          191 GCASNDSSFPP----GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       191 ~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                             +++|    ..+..+.+|| +...-..+....  .+..+-.....+++|..+.+++.+| ....++++|++...
T Consensus       118 -------LAagldkhrnds~~~Iwd-i~s~ltvPke~~--~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~  187 (783)
T KOG1008|consen  118 -------LAAGLDKHRNDSSLKIWD-INSLLTVPKESP--LFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL  187 (783)
T ss_pred             -------HHhhhhhhcccCCcccee-cccccCCCcccc--ccccccccCccccccccCcchhhcccccchhhhhhhhhhh
Confidence                   2333    3457889999 433211111111  1111122445688999888999999 88899999998332


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc-CCCceecccccccccccCCCCcccccccccee
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      .....       +  ....+..+..+|-.+.++++-. ||.|.+||. +.-   ..++..+...+.+.+        ..+
T Consensus       188 ~~~~s-------v--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni---enpl~~i~~~~N~~~--------~~l  246 (783)
T KOG1008|consen  188 DSVSS-------V--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI---ENPLQIILRNENKKP--------KQL  246 (783)
T ss_pred             hhhhh-------h--hhhhcccceecCCCCCceeccc-cCceeeccchhhh---ccHHHHHhhCCCCcc--------cce
Confidence            21111       1  2334667888884437777655 999999994 322   233344333322111        358


Q ss_pred             EEEEEccCCC-EEEEe-CC-CeEEEEECCC
Q 015363          345 SDIKFARNGR-HILSR-DY-MTLKLWDINM  371 (408)
Q Consensus       345 ~~~~~spdg~-~l~s~-~d-~~v~~wd~~~  371 (408)
                      ..++|.|... .|++. .| ++|+++|+..
T Consensus       247 ~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  247 FALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             eeEEeccCCcchhhhhccCcceEEEecccc
Confidence            8999999543 34444 45 9999999874

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.40  E-value=0.02  Score=47.57  Aligned_cols=204  Identities=10%  Similarity=0.099  Sum_probs=115.2

Q ss_pred             eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL  254 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~  254 (408)
                      ++.|+|+.+.+            |+......-.++-  .     ..+..++.+....-...-.|.+..++++.++- .++
T Consensus        90 ~LTynp~~rtL------------Fav~n~p~~iVEl--t-----~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~  150 (316)
T COG3204          90 SLTYNPDTRTL------------FAVTNKPAAIVEL--T-----KEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDR  150 (316)
T ss_pred             ceeeCCCcceE------------EEecCCCceEEEE--e-----cCCceEEEecccccCChhHeEEecCCEEEEEehhcc
Confidence            78999999987            5544443333221  1     11222222111111234456777677777776 799


Q ss_pred             eEEEEeCCCCCceeeEee--cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363          255 RINLWNLEISNQSFNIVD--VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  332 (408)
Q Consensus       255 ~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  332 (408)
                      .+.++.+......+....  +........+...-.++|+|.. ..|..+-...-+.||.+....      ..+..|....
T Consensus       151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~------~~l~~~~~~~  223 (316)
T COG3204         151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSP------SSLSVHASLD  223 (316)
T ss_pred             eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCC------cccccccccC
Confidence            999988875433332211  1111122225567789999999 777777777777777766432      1222221100


Q ss_pred             CccccccccceeEEEEEccC-CCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeeceeeec
Q 015363          333 TRSFFTEIIASISDIKFARN-GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTLY  407 (408)
Q Consensus       333 ~~~~~~~h~~~i~~~~~spd-g~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  407 (408)
                      +...-.-....|.++.|.+. +.+|+-+. ++.+.-.|..  |.++..+.-+.+....-...-+.+-+++|...+||
T Consensus       224 ~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~--G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lY  298 (316)
T COG3204         224 PTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS--GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLY  298 (316)
T ss_pred             cccccceEeeccccceecCCCCcEEEEecCCceEEEEecC--CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEE
Confidence            00000001235778888874 44555554 4788778875  57677777666654444445577778999998888

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.36  E-value=0.11  Score=47.26  Aligned_cols=32  Identities=13%  Similarity=0.361  Sum_probs=24.7

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK  147 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~  147 (408)
                      +.|.++.|..   .+.|++-..||.++++|+....
T Consensus        81 ~~iv~~~wt~---~e~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   81 GRIVGMGWTD---DEELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             CCEEEEEECC---CCeEEEEEcCCEEEEEeCCCce
Confidence            4599999953   3567788899999999987443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.35  E-value=0.074  Score=49.72  Aligned_cols=80  Identities=13%  Similarity=0.101  Sum_probs=50.0

Q ss_pred             CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceec----ccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363          283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD----THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  358 (408)
Q Consensus       283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s  358 (408)
                      .....+.++|||..+++++..+.+|.+.|+.+.+..-    .+-..+.+.-         .-.......+|.++|....|
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev---------evGlGPLHTaFDg~G~ayts  391 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP---------ELGLGPLHTAFDGRGNAYTT  391 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee---------ccCCCcceEEECCCCCEEEe
Confidence            4457899999994455555668999999998764210    0000000000         00123456789999875555


Q ss_pred             e-CCCeEEEEECCC
Q 015363          359 R-DYMTLKLWDINM  371 (408)
Q Consensus       359 ~-~d~~v~~wd~~~  371 (408)
                      - -|..|..||+..
T Consensus       392 lf~dsqv~kwn~~~  405 (635)
T PRK02888        392 LFLDSQIVKWNIEA  405 (635)
T ss_pred             EeecceeEEEehHH
Confidence            5 478999999975

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.31  E-value=0.0012  Score=38.62  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=29.3

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCC
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTD   66 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~   66 (408)
                      -...|.+++|+|...+||.|+.+|.|.|+.++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            345699999999999999999999999999843

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.0017  Score=59.02  Aligned_cols=80  Identities=20%  Similarity=0.227  Sum_probs=62.1

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      -.-.|.-+.|+|.-.++|++..+|.|.+..+.-.+                        +..+.-|.            .
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR------------------------lwtip~p~------------~   62 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQR------------------------LWTIPIPG------------E   62 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEeccce------------------------eEeccCCC------------C
Confidence            34568889999999999999999988888766332                        22333333            3


Q ss_pred             cee-EEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE
Q 015363          114 KIN-KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV  151 (408)
Q Consensus       114 ~v~-~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  151 (408)
                      .++ +++|-  +||+++|+|-.||+|++.|++++..+..
T Consensus        63 ~v~~sL~W~--~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   63 NVTASLCWR--PDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             ccceeeeec--CCCCEEEEEecCCeEEEEEccCCCceec
Confidence            355 99995  5599999999999999999999876654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.29  E-value=0.0032  Score=56.91  Aligned_cols=143  Identities=15%  Similarity=0.190  Sum_probs=85.0

Q ss_pred             cceEEEEeCCCCCEEEEe--c--C-CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe--
Q 015363          234 YHINSISNNSDGETFISA--D--D-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS--  306 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~--~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~--  306 (408)
                      ..+..-+|+|++..++.-  .  . ..+.++|++.+......      ++.++.   ...+|+|||.+++++...||.  
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~g~~---~~P~fspDG~~l~f~~~rdg~~~  263 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFNGNN---GAPAFSPDGSKLAFSSSRDGSPD  263 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccCCcc---CCccCCCCCCEEEEEECCCCCcc
Confidence            456677899999877653  2  2 45999999965544322      133333   457999999666666667775  


Q ss_pred             EEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCC--CeEEEEECCCCCCceeeeeeccc
Q 015363          307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d--~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      |.++|+..+...     .+....            +.-..-.|+|||++|+-.+|  |.-.||-.+.++...+.+....+
T Consensus       264 iy~~dl~~~~~~-----~Lt~~~------------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~  326 (425)
T COG0823         264 IYLMDLDGKNLP-----RLTNGF------------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG  326 (425)
T ss_pred             EEEEcCCCCcce-----ecccCC------------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC
Confidence            555677665421     122111            12235689999999997754  66566655555555555555444


Q ss_pred             ccceEEecCCCeeeeeec
Q 015363          385 LRPKVMHSSKNYFMGLDN  402 (408)
Q Consensus       385 ~~~~~~~~~~~~~~~~d~  402 (408)
                      -...-....+++.|+++.
T Consensus       327 ~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         327 GNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             CCcCccCCCCCCEEEEEe
Confidence            433222344555555544

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.18  E-value=0.041  Score=38.75  Aligned_cols=66  Identities=20%  Similarity=0.349  Sum_probs=44.5

Q ss_pred             eEEEEe---CCCC-CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEE
Q 015363          236 INSISN---NSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  310 (408)
Q Consensus       236 v~~i~~---~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  310 (408)
                      |+++++   ..+| +.|++| +|..|++|+-+.  ...+        +.. ...|+++.-...+  .|+.+-.+|+|-+|
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------i~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY   68 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------ITE-TDKVTSLCSLGGG--RFAYALANGTVGVY   68 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------Eec-ccceEEEEEcCCC--EEEEEecCCEEEEE
Confidence            444544   3343 566677 999999998762  2222        122 4557777777665  69999999999999


Q ss_pred             EcCC
Q 015363          311 DMRQ  314 (408)
Q Consensus       311 d~~~  314 (408)
                      +-..
T Consensus        69 ~~~~   72 (111)
T PF14783_consen   69 DRSQ   72 (111)
T ss_pred             eCcc
Confidence            8754

>smart00320 WD40 WD40 repeats

Probab=97.18  E-value=0.00072  Score=37.38  Aligned_cols=33  Identities=36%  Similarity=0.547  Sum_probs=29.4

Q ss_pred             ccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 015363          278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  311 (408)
Q Consensus       278 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  311 (408)
                      +..|...|.++.|+|.+ .++++++.|+.+++|+
T Consensus         8 ~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        8 LKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            45677889999999998 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.97  E-value=0.0028  Score=37.03  Aligned_cols=30  Identities=20%  Similarity=0.636  Sum_probs=26.9

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ  144 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~  144 (408)
                      ..|.+++|||.  ..++|.++.||.|.++++.
T Consensus        12 ~~v~~~~w~P~--mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPT--MDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCC--CCEEEEEECCCeEEEEECC
Confidence            67999999987  5599999999999999984

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.91  E-value=0.039  Score=38.85  Aligned_cols=30  Identities=13%  Similarity=0.272  Sum_probs=22.6

Q ss_pred             eeEEEEeec-CC-CcEEEEEeCCCeEEEEEcC
Q 015363          115 INKIRWCQS-AN-SALYLLSTNDKTIKLWKVQ  144 (408)
Q Consensus       115 v~~v~~~p~-~~-~~~l~~~~~d~~i~vwd~~  144 (408)
                      |++++++.- .+ ...|++|+.|..|++|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~   33 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD   33 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC
Confidence            677887752 22 2579999999999999855

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.89  E-value=0.0026  Score=50.48  Aligned_cols=104  Identities=12%  Similarity=0.178  Sum_probs=59.3

Q ss_pred             CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE-EEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccc
Q 015363          244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH  321 (408)
Q Consensus       244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  321 (408)
                      .+..+++| .+|.|.+|.....+.....+       ......+- .+.--.++ .+..+++.||.|+.|++...+.+   
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~-------~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~~---  137 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRV-------CSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKVL---  137 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhh-------hcccccceecccccccc-ceeEEeccCCceeeeccccCcee---
Confidence            35677788 99999999987444332221       11122222 22222333 58889999999999999887654   


Q ss_pred             ccccccccCCCCccccccccceeEEEEEccCCCEEEEe--C-CCeEEEEECC
Q 015363          322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D-YMTLKLWDIN  370 (408)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~-d~~v~~wd~~  370 (408)
                       .....|..           .++.....+..+++|+.+  + |..++.|++.
T Consensus       138 -g~~g~h~~-----------~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  138 -GYVGQHNF-----------ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             -eeeccccC-----------CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence             22222210           233344444455555554  3 4666677665

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.89  E-value=0.032  Score=50.06  Aligned_cols=143  Identities=16%  Similarity=0.151  Sum_probs=88.3

Q ss_pred             ccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-------EEEEe-cCCeEEEEeCCCCCc-ee
Q 015363          198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-------TFISA-DDLRINLWNLEISNQ-SF  268 (408)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~l~~~-~d~~i~iwd~~~~~~-~~  268 (408)
                      +.++.....++-.| +...+.      +... .-+.. |+-+.+.|+..       .-+.| +|..|.-||.+-.+. .+
T Consensus       349 l~~~~~~~~l~klD-IE~GKI------VeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLD-IERGKI------VEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             eeCCCCcCcceeee-ccccee------eeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence            45666666666666 433222      2222 22222 66667777642       12346 899999999985444 22


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      .....+  .+.. .....|.+-..+|  ++|+|+.+|.|++||- .+....   ..+++-            ..+|..+.
T Consensus       420 ~~~q~k--qy~~-k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AK---TAlPgL------------G~~I~hVd  478 (644)
T KOG2395|consen  420 AVVQSK--QYST-KNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAK---TALPGL------------GDAIKHVD  478 (644)
T ss_pred             eeeecc--cccc-ccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhh---hccccc------------CCceeeEE
Confidence            221111  1211 2334566666676  8999999999999997 442210   223333            57899999


Q ss_pred             EccCCCEEEEeCCCeEEEEECC
Q 015363          349 FARNGRHILSRDYMTLKLWDIN  370 (408)
Q Consensus       349 ~spdg~~l~s~~d~~v~~wd~~  370 (408)
                      .+.||++|++..+..+.+-++.
T Consensus       479 vtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  479 VTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             eeccCcEEEEecccEEEEEEEe
Confidence            9999999998887788887775

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.75  E-value=0.31  Score=41.76  Aligned_cols=123  Identities=7%  Similarity=0.107  Sum_probs=66.5

Q ss_pred             cceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCc-----ccCCcCCeEEEEEcCCCCceEEEEeCCCeEE
Q 015363          234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN-----MEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  308 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  308 (408)
                      ..+.+++|.  ++.++.|......+.|+.+ .....+.......     ......++..+..+ ++ .+|++-  |..-.
T Consensus       139 ~~~~~i~~~--~~~i~v~~~~~f~~idl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-e~Ll~~--~~~g~  211 (275)
T PF00780_consen  139 DPPSSIAFL--GNKICVGTSKGFYLIDLNT-GSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DN-EFLLCY--DNIGV  211 (275)
T ss_pred             CCcEEEEEe--CCEEEEEeCCceEEEecCC-CCceEEeCccCCcchhhhcccCCCceEEEEeC-Cc-eEEEEe--cceEE
Confidence            667888888  6677777455578889883 3333332211100     00112233333443 34 555543  33333


Q ss_pred             EEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeec
Q 015363          309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      +.|. .|.......-.+.               ..+.++++.  ..||++-.++.|.+|++.+ +++++++...
T Consensus       212 fv~~-~G~~~r~~~i~W~---------------~~p~~~~~~--~pyli~~~~~~iEV~~~~~-~~lvQ~i~~~  266 (275)
T PF00780_consen  212 FVNK-NGEPSRKSTIQWS---------------SAPQSVAYS--SPYLIAFSSNSIEVRSLET-GELVQTIPLP  266 (275)
T ss_pred             EEcC-CCCcCcccEEEcC---------------CchhEEEEE--CCEEEEECCCEEEEEECcC-CcEEEEEECC
Confidence            3344 3332211111111               235556663  4688888777899999998 7999988754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.62  E-value=0.33  Score=40.42  Aligned_cols=224  Identities=11%  Similarity=0.083  Sum_probs=114.0

Q ss_pred             eeEEEEeecCCCcEEEEEeCCCe-EEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKT-IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      -..|+|+|... .-++.+-+-|+ ..++|....+...+........       .+.      --.|+|||.+|....+. 
T Consensus        70 ~Hgi~~~p~~~-ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH-------fyG------HGvfs~dG~~LYATEnd-  134 (366)
T COG3490          70 GHGIAFHPALP-RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH-------FYG------HGVFSPDGRLLYATEND-  134 (366)
T ss_pred             cCCeecCCCCc-ceEEEEecCCceEEEECCCCCcCcEEEecccCce-------eec------ccccCCCCcEEEeecCC-
Confidence            44577776544 24555555554 4677888776555444332221       110      24688999987332221 


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEE--------eCCCCC
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLW--------NLEISN  265 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iw--------d~~~~~  265 (408)
                           + -..-|.|-+|| ....- ...    -. ...|.-....+.+.+||+.++.+.. -|..-        +++..+
T Consensus       135 -----f-d~~rGViGvYd-~r~~f-qrv----gE-~~t~GiGpHev~lm~DGrtlvvanG-GIethpdfgR~~lNldsMe  200 (366)
T COG3490         135 -----F-DPNRGVIGVYD-AREGF-QRV----GE-FSTHGIGPHEVTLMADGRTLVVANG-GIETHPDFGRTELNLDSME  200 (366)
T ss_pred             -----C-CCCCceEEEEe-ccccc-cee----cc-cccCCcCcceeEEecCCcEEEEeCC-ceecccccCccccchhhcC
Confidence                 1 23447889998 43211 111    12 2566666778999999999987632 12222        233233


Q ss_pred             ceeeEeec------CCCccc--CCcCCeEEEEEcCCCCceEEEEeCCCe-----EEEEEcCCCceecccccccccccCCC
Q 015363          266 QSFNIVDV------KPANME--DLTEVITSAEFHPTHCNMLAYSSSKGS-----IRLIDMRQSALCDTHSKLFEEQEAPG  332 (408)
Q Consensus       266 ~~~~~~~~------~~~~~~--~~~~~v~~~~~~p~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~  332 (408)
                      ..+.+++.      ...++.  -+...++.++..++| .+++.+-..|.     -.+=-.+.++    +++.+...    
T Consensus       201 PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~----~l~~~~~p----  271 (366)
T COG3490         201 PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGE----PLEFLDLP----  271 (366)
T ss_pred             ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCC----cCcccCCC----
Confidence            33332220      111222  344567888888888 55544432221     0000111111    11222211    


Q ss_pred             CccccccccceeEEEEEccCCCEEEEeC--CCeEEEEECCCCCCceee
Q 015363          333 TRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVAT  378 (408)
Q Consensus       333 ~~~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~~~~~~~~  378 (408)
                       +.+.......|-+++.+.+..+++..+  .+...+||..+ |..+..
T Consensus       272 -ee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t-G~vv~~  317 (366)
T COG3490         272 -EEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT-GAVVSE  317 (366)
T ss_pred             -HHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC-CcEEec
Confidence             111122234577788886555555443  37899999998 665543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.59  E-value=0.0073  Score=58.58  Aligned_cols=97  Identities=15%  Similarity=0.318  Sum_probs=69.4

Q ss_pred             ceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCC
Q 015363          296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSG  374 (408)
Q Consensus       296 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~  374 (408)
                      -.++.|+..|.+-..|+... .     +.+...+         .-.++|++++|+.||+.++.| .+|.|.+||+.. ++
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~n-L-----~~~~~ne---------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k  163 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGN-L-----GPLHQNE---------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AK  163 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcc-c-----chhhcCC---------ccCCcceeeEecCCCceeccccCCCcEEEEEccC-Cc
Confidence            57888998999999888764 1     1111110         013789999999999999999 689999999998 79


Q ss_pred             ceeeeeecccccc-eEEecC--CCe-eeeeeceeeecC
Q 015363          375 PVATFQVHEHLRP-KVMHSS--KNY-FMGLDNIHTLYE  408 (408)
Q Consensus       375 ~~~~~~~~~~~~~-~~~~~~--~~~-~~~~d~~~~~~~  408 (408)
                      .++.+..|..... .+....  ++. ++..|+.+..|+
T Consensus       164 ~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~  201 (1206)
T KOG2079|consen  164 ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWK  201 (1206)
T ss_pred             ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEE
Confidence            9999988877633 333222  233 677787776664

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.54  E-value=0.57  Score=42.26  Aligned_cols=210  Identities=9%  Similarity=0.090  Sum_probs=123.5

Q ss_pred             eEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          116 NKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       116 ~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      ..++.++.  +. .++....++.|.+.|..+.+.........                .+..+.+.++++.+        
T Consensus        77 ~~i~v~~~--~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~----------------~P~~~~~~~~~~~v--------  130 (381)
T COG3391          77 AGVAVNPA--GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL----------------GPVGLAVDPDGKYV--------  130 (381)
T ss_pred             cceeeCCC--CCeEEEecCCCCeEEEEcCcccceeeEeeecc----------------CCceEEECCCCCEE--------
Confidence            34566433  44 45555567899999977766655443322                22268899999876        


Q ss_pred             CccccCCC---CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceee
Q 015363          195 NDSSFPPG---GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       195 ~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~  269 (408)
                          +.+.   .++.+.+.| -..      .........+. .+ ..++++|+|..+...  .++.|.+.|.. ......
T Consensus       131 ----YV~n~~~~~~~vsvid-~~t------~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~-~~~v~~  196 (381)
T COG3391         131 ----YVANAGNGNNTVSVID-AAT------NKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS-GNSVVR  196 (381)
T ss_pred             ----EEEecccCCceEEEEe-CCC------CeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCC-Ccceec
Confidence                3322   356666655 111      11111111111 22 789999999977776  69999999976 332221


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC--CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                        ........ -......+.++|++....++-..+  +.+...|..++.....   ......           . ....+
T Consensus       197 --~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~---~~~~~~-----------~-~~~~v  258 (381)
T COG3391         197 --GSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT---DLPVGS-----------G-APRGV  258 (381)
T ss_pred             --cccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe---cccccc-----------C-CCCce
Confidence              00000011 123346799999994344444433  5899999988765421   011110           1 24567


Q ss_pred             EEccCCCEEEEe-CC-CeEEEEECCCCCCceeeeeeccc
Q 015363          348 KFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       348 ~~spdg~~l~s~-~d-~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      ..+|+|+++... .. +.+.+-|..+ ......+.....
T Consensus       259 ~~~p~g~~~yv~~~~~~~V~vid~~~-~~v~~~~~~~~~  296 (381)
T COG3391         259 AVDPAGKAAYVANSQGGTVSVIDGAT-DRVVKTGPTGNE  296 (381)
T ss_pred             eECCCCCEEEEEecCCCeEEEEeCCC-Cceeeeeccccc
Confidence            899999999988 44 8999999987 466665554443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.48  E-value=0.29  Score=39.45  Aligned_cols=139  Identities=10%  Similarity=0.062  Sum_probs=79.1

Q ss_pred             ccceEEEEeCCCCCEEEEe-cC---------CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe
Q 015363          233 DYHINSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS  302 (408)
Q Consensus       233 ~~~v~~i~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  302 (408)
                      ..+.+.-..+|+|++++.. .|         |.++.|-..  .+.-.+        ...-..-..++|+.+...+.+.-+
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i--------~~~v~IsNgl~Wd~d~K~fY~iDs  177 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELI--------WNCVGISNGLAWDSDAKKFYYIDS  177 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceee--------ehhccCCccccccccCcEEEEEcc
Confidence            3556777889999997643 32         344444443  111111        111122356899988844555556


Q ss_pred             CCCeEEEEE--cCCCceeccc-ccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceee
Q 015363          303 SKGSIRLID--MRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVAT  378 (408)
Q Consensus       303 ~dg~i~iwd--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~  378 (408)
                      .+-+|.-||  ..+|....+. +..++....       .++ ...-.++...+|.+.++. +.++|...|..+ |+.++.
T Consensus       178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~-------~e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~e  248 (310)
T KOG4499|consen  178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQP-------FES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLE  248 (310)
T ss_pred             CceEEeeeecCCCcccccCcceeEEeccCCC-------cCC-CCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEE
Confidence            678887787  6666443211 111111100       000 112234556678877777 569999999998 899999


Q ss_pred             eeecccccceEE
Q 015363          379 FQVHEHLRPKVM  390 (408)
Q Consensus       379 ~~~~~~~~~~~~  390 (408)
                      +.-......+.|
T Consensus       249 iklPt~qitscc  260 (310)
T KOG4499|consen  249 IKLPTPQITSCC  260 (310)
T ss_pred             EEcCCCceEEEE
Confidence            988755544444

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.47  E-value=0.0039  Score=59.22  Aligned_cols=129  Identities=12%  Similarity=0.115  Sum_probs=72.3

Q ss_pred             cceEEEEeCC---CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEE-----------EcCCCCceE
Q 015363          234 YHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE-----------FHPTHCNML  298 (408)
Q Consensus       234 ~~v~~i~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~p~~~~~l  298 (408)
                      ..+.-|.|.|   +..++-.+ .++.|++...+.....  +       +.+|..++..++           .+||| ..|
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~--l-------~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~  250 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS--L-------FRSHSQRVTDMAFFAEGVLKLASLSPDG-TVF  250 (1283)
T ss_pred             CCcceeeecccccccceeeeccCCCceeEeeechHHHH--H-------HHhcCCCcccHHHHhhchhhheeeCCCC-cEE
Confidence            3445566655   44555566 7888888777643332  1       344665555443           68999 999


Q ss_pred             EEEeCCCeEEEEEcC-CCceecccccccccccC-CCCccccccccceeEEEEEccCCCEEEEeCC--CeEEEEECCCCCC
Q 015363          299 AYSSSKGSIRLIDMR-QSALCDTHSKLFEEQEA-PGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSG  374 (408)
Q Consensus       299 ~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d--~~v~~wd~~~~~~  374 (408)
                      |.++.||.++.|.+. +++...+++..++.|.. +..+..+..|...+.++.+   -.++++++|  ..+++|.-.. -+
T Consensus       251 a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~---w~~~Itttd~nre~k~w~~a~-w~  326 (1283)
T KOG1916|consen  251 AWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGK---WVLRITTTDVNREEKFWAEAP-WQ  326 (1283)
T ss_pred             EEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccce---eEEEEecccCCcceeEeeccc-hh
Confidence            999999999999764 33333344556666631 1111001111111111111   135667765  7899998765 34


Q ss_pred             ce
Q 015363          375 PV  376 (408)
Q Consensus       375 ~~  376 (408)
                      |+
T Consensus       327 Cl  328 (1283)
T KOG1916|consen  327 CL  328 (1283)
T ss_pred             hh
Confidence            44

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.45  E-value=0.016  Score=56.36  Aligned_cols=105  Identities=15%  Similarity=0.269  Sum_probs=70.6

Q ss_pred             CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccc
Q 015363          244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS  322 (408)
Q Consensus       244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  322 (408)
                      .+..++.| +.|.+...|....-....       .-..-.++|++++|+.+| .+++.|-.+|.|.+||+..++..    
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~-------~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l----  165 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLH-------QNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKIL----  165 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhh-------cCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcce----
Confidence            45567777 888888888873211110       012236789999999999 99999999999999999988654    


Q ss_pred             cccccccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCC
Q 015363          323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM  371 (408)
Q Consensus       323 ~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~  371 (408)
                      +.+..+..|         ...|..+.+..++..+++++. |.  +|.+.-
T Consensus       166 ~~i~e~~ap---------~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~  204 (1206)
T KOG2079|consen  166 KVITEHGAP---------VTGVIFVGRTSQNSKLLTSDTGGS--FWKLVF  204 (1206)
T ss_pred             eeeeecCCc---------cceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence            554444211         134555566666666777764 55  676654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.34  E-value=0.44  Score=43.66  Aligned_cols=115  Identities=14%  Similarity=0.218  Sum_probs=67.7

Q ss_pred             ceEEEEeCCCCCEEEEe-c-C----CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC----
Q 015363          235 HINSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----  304 (408)
Q Consensus       235 ~v~~i~~~~~~~~l~~~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----  304 (408)
                      .+....++|+++++|.+ + .    ..|+++|++++......       +..  .....+.|.+++ ..|+....+    
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-------i~~--~~~~~~~W~~d~-~~~~y~~~~~~~~  194 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-------IEN--PKFSSVSWSDDG-KGFFYTRFDEDQR  194 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-------EEE--EESEEEEECTTS-SEEEEEECSTTTS
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-------ccc--cccceEEEeCCC-CEEEEEEeCcccc
Confidence            34467899999999865 2 3    46999999955332222       111  111349999998 555544432    


Q ss_pred             -------CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe--C--C-CeEEEEECCC
Q 015363          305 -------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D--Y-MTLKLWDINM  371 (408)
Q Consensus       305 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~--d-~~v~~wd~~~  371 (408)
                             ..|++|.+.+....+.  ..++....          ......+..++|+++|+..  +  + ..+.+-++..
T Consensus       195 ~~~~~~~~~v~~~~~gt~~~~d~--lvfe~~~~----------~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  195 TSDSGYPRQVYRHKLGTPQSEDE--LVFEEPDE----------PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             S-CCGCCEEEEEEETTS-GGG-E--EEEC-TTC----------TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             cccCCCCcEEEEEECCCChHhCe--eEEeecCC----------CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence                   2377788776643211  23333321          1125678899999998753  2  3 5688888875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.32  E-value=0.69  Score=44.15  Aligned_cols=112  Identities=10%  Similarity=0.166  Sum_probs=53.3

Q ss_pred             eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccc-cccccceeeccccccceEEEEeCCCCCEEEEecCC
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-LVAGCRRIYAHAHDYHINSISNNSDGETFISADDL  254 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~  254 (408)
                      .+.|+|||..+..+.             ++.|.+--++...... ....+ +.+...-...+.++.|..++.+++...++
T Consensus       452 sl~wSpDG~RiA~i~-------------~g~v~Va~Vvr~~~G~~~l~~~-~~l~~~l~~~~~~l~W~~~~~L~V~~~~~  517 (591)
T PRK13616        452 ELQLSRDGVRAAMII-------------GGKVYLAVVEQTEDGQYALTNP-REVGPGLGDTAVSLDWRTGDSLVVGRSDP  517 (591)
T ss_pred             eEEECCCCCEEEEEE-------------CCEEEEEEEEeCCCCceeeccc-EEeecccCCccccceEecCCEEEEEecCC
Confidence            789999999884322             2455543312222221 11111 11112223346789999999866444333


Q ss_pred             eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEE
Q 015363          255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL  309 (408)
Q Consensus       255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  309 (408)
                      ...+|.+.-.+.....+     .-......+..++-+++  . ++....++.+.+
T Consensus       518 ~~~v~~v~vDG~~~~~~-----~~~n~~~~v~~vaa~~~--~-iyv~~~~g~~~l  564 (591)
T PRK13616        518 EHPVWYVNLDGSNSDAL-----PSRNLSAPVVAVAASPS--T-VYVTDARAVLQL  564 (591)
T ss_pred             CCceEEEecCCcccccc-----CCCCccCceEEEecCCc--e-EEEEcCCceEEe
Confidence            33344443223221110     01112456777777763  3 444455664443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.32  E-value=0.19  Score=45.42  Aligned_cols=116  Identities=11%  Similarity=0.008  Sum_probs=71.0

Q ss_pred             eeEEEEeecCCCcEE-----EEEeCCCeEEEEEcCCCc--EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          115 INKIRWCQSANSALY-----LLSTNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       115 v~~v~~~p~~~~~~l-----~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                      |+-+.+.|+..+..+     +.|-.|+.|.-||.+-..  .+...+.+...    .....       .+.+-..+|.   
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~----~k~nF-------sc~aTT~sG~---  443 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS----TKNNF-------SCFATTESGY---  443 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc----ccccc-------ceeeecCCce---
Confidence            777777665443333     456688899999987321  12222221110    00001       1333344443   


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCC
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLE  262 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~  262 (408)
                                +++|+.+|.|++||.        .....++.+++-..+|..|..+.+|.++++..+..+.+.++.
T Consensus       444 ----------IvvgS~~GdIRLYdr--------i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  444 ----------IVVGSLKGDIRLYDR--------IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             ----------EEEeecCCcEEeehh--------hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence                      388999999999991        222223335777889999999999999887766777777764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.29  E-value=0.28  Score=44.16  Aligned_cols=82  Identities=11%  Similarity=0.141  Sum_probs=50.3

Q ss_pred             cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcc-cCCcCCeEEEEEcC-----CC--CceEEE
Q 015363          230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM-EDLTEVITSAEFHP-----TH--CNMLAY  300 (408)
Q Consensus       230 ~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p-----~~--~~~l~s  300 (408)
                      ....++|++++.+. =.++|.| .+|.+.|.|++ +-..+....++.... ......++++.|..     |+  .-.|.+
T Consensus        83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eccCCcEeEEecCC-CcEEEEEecCCcEEEEECC-CCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            45578999999974 4588889 89999999998 444433333322111 12345678888862     21  136888


Q ss_pred             EeCCCeEEEEEcC
Q 015363          301 SSSKGSIRLIDMR  313 (408)
Q Consensus       301 ~~~dg~i~iwd~~  313 (408)
                      |+..|.+.+|.+.
T Consensus       161 GTn~G~v~~fkIl  173 (395)
T PF08596_consen  161 GTNSGNVLTFKIL  173 (395)
T ss_dssp             EETTSEEEEEEEE
T ss_pred             EeCCCCEEEEEEe
Confidence            8999999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.23  E-value=0.31  Score=42.85  Aligned_cols=140  Identities=13%  Similarity=0.090  Sum_probs=79.2

Q ss_pred             ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCC
Q 015363          205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEV  284 (408)
Q Consensus       205 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  284 (408)
                      |.|.+++ +..... ...+..........++|++++--  +..|+.+..+.|.+|++..........      .......
T Consensus        62 Gri~v~~-i~~~~~-~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~------~~~~~~~  131 (321)
T PF03178_consen   62 GRILVFE-ISESPE-NNFKLKLIHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKA------FYDSPFY  131 (321)
T ss_dssp             EEEEEEE-ECSS------EEEEEEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEE------EE-BSSS
T ss_pred             cEEEEEE-EEcccc-cceEEEEEEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhh------eecceEE
Confidence            8888888 544200 00111111113345778888755  445777777999999999555233321      1112235


Q ss_pred             eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCe
Q 015363          285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMT  363 (408)
Q Consensus       285 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~  363 (408)
                      +.++...  + .+++.|..-..+.++..+.....   +..+.....          ...+.++.|-+|+..++.++ +|.
T Consensus       132 i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~---l~~va~d~~----------~~~v~~~~~l~d~~~~i~~D~~gn  195 (321)
T PF03178_consen  132 ITSLSVF--K-NYILVGDAMKSVSLLRYDEENNK---LILVARDYQ----------PRWVTAAEFLVDEDTIIVGDKDGN  195 (321)
T ss_dssp             EEEEEEE--T-TEEEEEESSSSEEEEEEETTTE----EEEEEEESS-----------BEEEEEEEE-SSSEEEEEETTSE
T ss_pred             EEEEecc--c-cEEEEEEcccCEEEEEEEccCCE---EEEEEecCC----------CccEEEEEEecCCcEEEEEcCCCe
Confidence            6666655  5 57888888888888755542110   112211111          24688999987777777775 599


Q ss_pred             EEEEECC
Q 015363          364 LKLWDIN  370 (408)
Q Consensus       364 v~~wd~~  370 (408)
                      +.++...
T Consensus       196 l~~l~~~  202 (321)
T PF03178_consen  196 LFVLRYN  202 (321)
T ss_dssp             EEEEEE-
T ss_pred             EEEEEEC
Confidence            9999886

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.15  E-value=0.77  Score=39.75  Aligned_cols=108  Identities=9%  Similarity=0.082  Sum_probs=61.2

Q ss_pred             eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL  254 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~  254 (408)
                      .++|+||++.+           +++-+..+.|.-|+ +....................+..-.++...+|.+.+++ .+|
T Consensus       167 Gla~SpDg~tl-----------y~aDT~~~~i~r~~-~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g  234 (307)
T COG3386         167 GLAFSPDGKTL-----------YVADTPANRIHRYD-LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG  234 (307)
T ss_pred             ceEECCCCCEE-----------EEEeCCCCeEEEEe-cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence            69999999877           34444456676666 332222222221122223344556677888889988766 544


Q ss_pred             -eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEc-CCCCceEEEEeCC
Q 015363          255 -RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSK  304 (408)
Q Consensus       255 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~d  304 (408)
                       .|.+|+.+ ++ .+..+.     +.  ...+++++|- |+...+++++...
T Consensus       235 ~~v~~~~pd-G~-l~~~i~-----lP--~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         235 GRVVRFNPD-GK-LLGEIK-----LP--VKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             ceEEEECCC-Cc-EEEEEE-----CC--CCCCccceEeCCCcCEEEEEecCC
Confidence             99999998 44 443332     22  2456677774 4443455555433

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.04  E-value=1.1  Score=40.47  Aligned_cols=89  Identities=17%  Similarity=0.220  Sum_probs=58.2

Q ss_pred             CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc---------
Q 015363          281 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---------  351 (408)
Q Consensus       281 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp---------  351 (408)
                      ....+.++..+|++ ++.|+...=|+|.|+|+.++..+    +.++|.....        .+++....-..         
T Consensus       306 ~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vv----rmWKGYRdAq--------c~wi~~~~~~~~~~~~~~~~  372 (415)
T PF14655_consen  306 SKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVV----RMWKGYRDAQ--------CGWIEVPEEGDRDRSNSNSP  372 (415)
T ss_pred             CCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhh----hhhccCccce--------EEEEEeeccccccccccccc
Confidence            34557889999998 88888766799999999998654    6677664210        11111111000         


Q ss_pred             -----CCCEEEE-e-CCCeEEEEECCCCCCceeeeeecc
Q 015363          352 -----NGRHILS-R-DYMTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       352 -----dg~~l~s-~-~d~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                           ...+|+. + --|.|.||.+++ |..+..+....
T Consensus       373 ~~~~~~~l~LvIyaprRg~lEvW~~~~-g~Rv~a~~v~k  410 (415)
T PF14655_consen  373 KSSSRFALFLVIYAPRRGILEVWSMRQ-GPRVAAFNVGK  410 (415)
T ss_pred             CCCCcceEEEEEEeccCCeEEEEecCC-CCEEEEEEeCC
Confidence                 1234443 3 359999999998 78888887643

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.99  E-value=0.04  Score=31.15  Aligned_cols=29  Identities=10%  Similarity=0.086  Sum_probs=24.5

Q ss_pred             eeEEEEEccCC---CEEEEeCC-CeEEEEECCC
Q 015363          343 SISDIKFARNG---RHILSRDY-MTLKLWDINM  371 (408)
Q Consensus       343 ~i~~~~~spdg---~~l~s~~d-~~v~~wd~~~  371 (408)
                      .|.++.|||+.   .+|+-+.+ +.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            58999999854   48888876 9999999985

It contains a characteristic DLL sequence motif.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.97  E-value=1.3  Score=40.65  Aligned_cols=246  Identities=13%  Similarity=0.154  Sum_probs=118.3

Q ss_pred             ceEEEEECCCCCeEEEe-ecCC----eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           37 IISAIEFDKSGDHLATG-DRGG----RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      .+...++||+|++||.+ +..|    .++++|+.+++..                      ...+..             
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l----------------------~d~i~~-------------  169 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL----------------------PDGIEN-------------  169 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE----------------------EEEEEE-------------
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc----------------------CCcccc-------------
Confidence            45578899999988865 3334    5999999887531                      001111             


Q ss_pred             ccceeEEEEeecCCCcEEEEEeC-----------CCeEEEEEcCCCcEE--EEeccCCCCcccCCCCCeEeecCCceeeE
Q 015363          112 EEKINKIRWCQSANSALYLLSTN-----------DKTIKLWKVQEKKVK--KVFDWNVHPEKAAGNGPIFGSHVSAIPKS  178 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~-----------d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (408)
                       .....+.|.++  ++.|+....           ...|+.|++.+....  .++......      ....       .+.
T Consensus       170 -~~~~~~~W~~d--~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~------~~~~-------~~~  233 (414)
T PF02897_consen  170 -PKFSSVSWSDD--GKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP------FWFV-------SVS  233 (414)
T ss_dssp             -EESEEEEECTT--SSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT------TSEE-------EEE
T ss_pred             -cccceEEEeCC--CCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC------cEEE-------EEE
Confidence             11223899644  556655542           334778888766433  444333221      0011       577


Q ss_pred             EccCCCeeecccccccCccccCCCCC-ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe----cC
Q 015363          179 YMANGGCGERNFGCASNDSSFPPGGV-SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----DD  253 (408)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~----~d  253 (408)
                      .+++++.+...         ...+.+ ..+.+.+ +.... .. ....+.+.....+....+... .+.+++..    ..
T Consensus       234 ~s~d~~~l~i~---------~~~~~~~s~v~~~d-~~~~~-~~-~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~  300 (414)
T PF02897_consen  234 RSKDGRYLFIS---------SSSGTSESEVYLLD-LDDGG-SP-DAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPN  300 (414)
T ss_dssp             E-TTSSEEEEE---------EESSSSEEEEEEEE-CCCTT-TS-S-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT
T ss_pred             ecCcccEEEEE---------EEccccCCeEEEEe-ccccC-CC-cCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCC
Confidence            88898886210         112222 4455544 22210 00 011111112222222333333 44444433    36


Q ss_pred             CeEEEEeCCCCCc--eeeEeecCCCcccCCcC--CeEEEEEcCCCCceEEEEeCCC--eEEEEEcC-CCceecccccccc
Q 015363          254 LRINLWNLEISNQ--SFNIVDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKG--SIRLIDMR-QSALCDTHSKLFE  326 (408)
Q Consensus       254 ~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~~~dg--~i~iwd~~-~~~~~~~~~~~~~  326 (408)
                      +.|.-.++.....  ....       +..+..  .+..+...  +..+++....++  .|+++++. ....     ....
T Consensus       301 ~~l~~~~l~~~~~~~~~~~-------l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~-----~~~~  366 (414)
T PF02897_consen  301 GRLVAVDLADPSPAEWWTV-------LIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKES-----REIP  366 (414)
T ss_dssp             -EEEEEETTSTSGGGEEEE-------EE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEE-----EEEE
T ss_pred             cEEEEecccccccccceeE-------EcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEE-----eeec
Confidence            7787788875543  1111       233444  34444443  424555555554  68888888 3322     2222


Q ss_pred             cccCCCCccccccccceeEEEEEccCCCEEE-E-eC--C-CeEEEEECCC
Q 015363          327 EQEAPGTRSFFTEIIASISDIKFARNGRHIL-S-RD--Y-MTLKLWDINM  371 (408)
Q Consensus       327 ~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~-s-~~--d-~~v~~wd~~~  371 (408)
                      ...           .+.|..+...+++..+. + .+  - .++..||+.+
T Consensus       367 ~p~-----------~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t  405 (414)
T PF02897_consen  367 LPE-----------AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT  405 (414)
T ss_dssp             SSS-----------SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred             CCc-----------ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            221           14566666666655443 2 22  2 8899999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.95  E-value=1.2  Score=40.00  Aligned_cols=122  Identities=12%  Similarity=0.132  Sum_probs=55.9

Q ss_pred             cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEc--CCCCceEEEEeCCCeEEEEEc-CCCceecccccccccc
Q 015363          252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQ  328 (408)
Q Consensus       252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~  328 (408)
                      ...++++||+. ..+..+.+++     .........+.|.  |+...-|+.+.-.++|..|-- ..+.-..+.+..+...
T Consensus       220 yG~~l~vWD~~-~r~~~Q~idL-----g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~  293 (461)
T PF05694_consen  220 YGHSLHVWDWS-TRKLLQTIDL-----GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK  293 (461)
T ss_dssp             S--EEEEEETT-TTEEEEEEES------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred             ccCeEEEEECC-CCcEeeEEec-----CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence            45789999999 6667776653     2222334566664  444233444444555655543 3332221111222111


Q ss_pred             -----cCCCCccccccccceeEEEEEccCCCEEEEe--CCCeEEEEECCCCCCceeee
Q 015363          329 -----EAPGTRSFFTEIIASISDIKFARNGRHILSR--DYMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       329 -----~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~d~~v~~wd~~~~~~~~~~~  379 (408)
                           ..+.....|..-..-|+++..|.|.++|..+  -+|.|+.||+....++..+-
T Consensus       294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~g  351 (461)
T PF05694_consen  294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVG  351 (461)
T ss_dssp             E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEE
T ss_pred             ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEe
Confidence                 1111111122223568999999999999877  36999999998765554443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.89  E-value=0.041  Score=31.12  Aligned_cols=33  Identities=21%  Similarity=0.598  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCC--ceEEEEeCCCeEEEEEcCCC
Q 015363          283 EVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       283 ~~v~~~~~~p~~~--~~l~s~~~dg~i~iwd~~~~  315 (408)
                      +.++++.|+|...  .+|+.+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3588999998763  58888888899999999953

It contains a characteristic DLL sequence motif.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.80  E-value=0.97  Score=37.99  Aligned_cols=173  Identities=10%  Similarity=0.119  Sum_probs=98.1

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..|.++.|+|+  ...|++......-.+|=..+|+.+.......-..              +=.+.+..++++.      
T Consensus        86 ~nvS~LTynp~--~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D--------------pE~Ieyig~n~fv------  143 (316)
T COG3204          86 ANVSSLTYNPD--TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD--------------PETIEYIGGNQFV------  143 (316)
T ss_pred             ccccceeeCCC--cceEEEecCCCceEEEEecCCceEEEecccccCC--------------hhHeEEecCCEEE------
Confidence            55999999776  4467777777777777777788877766543110              0035555555544      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccc----cceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAG----CRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                            ++--.++.+.++. +..........    +.... ...+...-.++|+|.+..|..+ +-.-+.||.+......
T Consensus       144 ------i~dER~~~l~~~~-vd~~t~~~~~~~~~i~L~~~-~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~  215 (316)
T COG3204         144 ------IVDERDRALYLFT-VDADTTVISAKVQKIPLGTT-NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS  215 (316)
T ss_pred             ------EEehhcceEEEEE-EcCCccEEeccceEEecccc-CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc
Confidence                  4444555555544 22211111110    11111 1225678899999999888888 7777777777633322


Q ss_pred             eeEeecCCCcc--cCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          268 FNIVDVKPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       268 ~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                      +........+.  .-.-..|.++.|++....+|+-+..++.+.-.|....
T Consensus       216 l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         216 LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             cccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            22110000000  0011346778898766477777777888877777644

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.73  E-value=0.56  Score=45.70  Aligned_cols=91  Identities=18%  Similarity=0.333  Sum_probs=55.3

Q ss_pred             CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC--Cce-------ecccccccccccCCCCcccc-ccccceeEEEEEccC
Q 015363          283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SAL-------CDTHSKLFEEQEAPGTRSFF-TEIIASISDIKFARN  352 (408)
Q Consensus       283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~-------~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~spd  352 (408)
                      -.|..+.++|+| .++|..+..|...+ .+..  +..       .....+++.-.     ..+| ..+...|..+.|+|.
T Consensus        85 f~v~~i~~n~~g-~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~-----~~~~~~~~~~~i~qv~WhP~  157 (717)
T PF10168_consen   85 FEVHQISLNPTG-SLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVD-----ERFFTSNSSLEIKQVRWHPW  157 (717)
T ss_pred             eeEEEEEECCCC-CEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEec-----hhhccCCCCceEEEEEEcCC
Confidence            458899999999 88888777664444 3321  100       00000111111     1112 234568999999995


Q ss_pred             ---CCEEEE-eCCCeEEEEECCCCCCceeeee
Q 015363          353 ---GRHILS-RDYMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       353 ---g~~l~s-~~d~~v~~wd~~~~~~~~~~~~  380 (408)
                         +..|+. .+|+++++||+.....+.+++.
T Consensus       158 s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  158 SESDSHLVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             CCCCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence               456655 5899999999987666666665

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.68  E-value=0.57  Score=44.44  Aligned_cols=117  Identities=10%  Similarity=0.156  Sum_probs=68.0

Q ss_pred             eEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEc--CCCCceEEEEeCCCeEEEEEc
Q 015363          236 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDM  312 (408)
Q Consensus       236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~dg~i~iwd~  312 (408)
                      ..-+.-+.-++..++- +..++.|||.+.+.-..+.      .+ ...+.|..+.|.  |++ +.+++.+-...|.+|--
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEc
Confidence            3344444444444444 6678999999854422221      13 346778999885  778 66777777888888853


Q ss_pred             CC-----CceecccccccccccCCCCcccccccc-ceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363          313 RQ-----SALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       313 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~spdg~~l~s~~d~~v~~wd~~~  371 (408)
                      ..     ......+++.+.          +..|+ .+|.+..|.++|.++++++ +.+.|+|-.-
T Consensus       104 ~R~dy~~~~p~w~~i~~i~----------i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk~~  157 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKID----------ISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDKWL  157 (631)
T ss_pred             cchhhhcCCcccceeEEEE----------eecCCCCCccceeEecCCeEEEEeC-CEEEEECCCc
Confidence            21     111111111111          11112 4689999999987666554 4788887643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.56  E-value=1.1  Score=42.75  Aligned_cols=128  Identities=11%  Similarity=0.137  Sum_probs=66.4

Q ss_pred             eEEEEeCCCCCEEEEe-cC-CeEEEEeCCCCCceeeEeecCCCccc-CCcCCeEEEEEcCCCCceEEEEeCCCeEEE---
Q 015363          236 INSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRL---  309 (408)
Q Consensus       236 v~~i~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i---  309 (408)
                      .+.-.|+|+|..+++. +. ..+++.+.....+ +..+.+...... .....|..+.|+||| ..++... +++|.+   
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq-l~~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V  475 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ-LARTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV  475 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCce-EEEEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence            6778999998888776 32 2334443332222 222222111111 224569999999999 6665544 577776   


Q ss_pred             EEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCcee
Q 015363          310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA  377 (408)
Q Consensus       310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~  377 (408)
                      -....+.........+..           +-...+.++.|.+++.+++...++...+|.+.-+|....
T Consensus       476 vr~~~G~~~l~~~~~l~~-----------~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~  532 (591)
T PRK13616        476 EQTEDGQYALTNPREVGP-----------GLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD  532 (591)
T ss_pred             EeCCCCceeecccEEeec-----------ccCCccccceEecCCEEEEEecCCCCceEEEecCCcccc
Confidence            333333211000011111           112336789999999866554443344555554444433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.47  E-value=0.29  Score=40.73  Aligned_cols=103  Identities=13%  Similarity=0.161  Sum_probs=65.3

Q ss_pred             eEEEEeCCCCC-EEEEe-cCC-eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC-----CeE
Q 015363          236 INSISNNSDGE-TFISA-DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSI  307 (408)
Q Consensus       236 v~~i~~~~~~~-~l~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i  307 (408)
                      -..|+++|.-. -++.+ .-| ...++|......+..+...+...+-+|      =.||||| .+|.+.-+|     |.|
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG-~~LYATEndfd~~rGVi  142 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDG-RLLYATENDFDPNRGVI  142 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCC-cEEEeecCCCCCCCceE
Confidence            34577888653 34445 434 457889885555554433222223333      4799999 777766544     789


Q ss_pred             EEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC
Q 015363          308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD  360 (408)
Q Consensus       308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~  360 (408)
                      -|||.+.+-   ..+.++..|            .-....+.|.+||+.|+.+.
T Consensus       143 GvYd~r~~f---qrvgE~~t~------------GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         143 GVYDAREGF---QRVGEFSTH------------GIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             EEEeccccc---ceecccccC------------CcCcceeEEecCCcEEEEeC
Confidence            999998552   222455544            34567899999999998763

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.37  E-value=1.5  Score=37.42  Aligned_cols=123  Identities=15%  Similarity=0.122  Sum_probs=69.2

Q ss_pred             eEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeec-CC------CcccCCcCCeEEEE--EcCCCCceEEEEeCCCe
Q 015363          236 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV-KP------ANMEDLTEVITSAE--FHPTHCNMLAYSSSKGS  306 (408)
Q Consensus       236 v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~------~~~~~~~~~v~~~~--~~p~~~~~l~s~~~dg~  306 (408)
                      |..+...|+-+.|++-.|+.+.++++..-......... .+      ..+ .....+...+  -...+...|+++ ...+
T Consensus        38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~~L~va-~kk~  115 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKL-PETKGVSFFAVNGGHEGSRRLCVA-VKKK  115 (275)
T ss_pred             EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccc-cccCCeeEEeeccccccceEEEEE-ECCE
Confidence            78888888888877777799999998743332210000 00      001 1122333333  223342444444 4568


Q ss_pred             EEEEEcCCCceec-ccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCce
Q 015363          307 IRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPV  376 (408)
Q Consensus       307 i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~  376 (408)
                      |.+|......... ...+.+...             ..+..++|.  +..|+.|......+.|+.+ +...
T Consensus       116 i~i~~~~~~~~~f~~~~ke~~lp-------------~~~~~i~~~--~~~i~v~~~~~f~~idl~~-~~~~  170 (275)
T PF00780_consen  116 ILIYEWNDPRNSFSKLLKEISLP-------------DPPSSIAFL--GNKICVGTSKGFYLIDLNT-GSPS  170 (275)
T ss_pred             EEEEEEECCcccccceeEEEEcC-------------CCcEEEEEe--CCEEEEEeCCceEEEecCC-CCce
Confidence            9998887642111 122333333             568889998  5677777555788899985 3443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.29  E-value=0.84  Score=40.99  Aligned_cols=67  Identities=6%  Similarity=0.091  Sum_probs=33.7

Q ss_pred             cceEEEEeCCCCCEEEEecCCeEEEEeCCCCC----ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe
Q 015363          234 YHINSISNNSDGETFISADDLRINLWNLEISN----QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS  302 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  302 (408)
                      ...+.+++.+++ ++++......++.|.....    +...++.--+..-..+......++|.|+| .+.++-+
T Consensus        72 ~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G  142 (367)
T TIGR02604        72 SMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG  142 (367)
T ss_pred             CCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence            346789999988 5555444433444554221    11112111000001123346789999999 6555444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.25  E-value=1.4  Score=36.27  Aligned_cols=66  Identities=14%  Similarity=0.156  Sum_probs=49.1

Q ss_pred             CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      -|++++.| ..|.+++.+.+++.+..+..-     .   ..-=......+++ .++..|+.|+..+..|.++...+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-----~---~~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cV  128 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-----L---ETVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCV  128 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeee-----h---hhhccceEEcCCC-ceEEEecCCCcEEEecccccceE
Confidence            36678888 899999999997767665421     1   1111245667888 89999999999999999987544

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.24  E-value=2  Score=37.83  Aligned_cols=205  Identities=14%  Similarity=0.247  Sum_probs=104.2

Q ss_pred             eccceEEEEECCC----CCeEEEeec----------CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccC
Q 015363           34 EVDIISAIEFDKS----GDHLATGDR----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH   99 (408)
Q Consensus        34 h~~~V~~~~~s~~----~~~l~sg~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h   99 (408)
                      +...+..+.+..+    ..+|++|+.          .|.|.++++......                  ..         
T Consensus        25 ~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~------------------~~---------   77 (321)
T PF03178_consen   25 HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN------------------NF---------   77 (321)
T ss_dssp             EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------------------------------
T ss_pred             eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccccc------------------ce---------
Confidence            3344555566553    468888763          289999998764100                  00         


Q ss_pred             CcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCCCCeEeecCCceeeE
Q 015363          100 EPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS  178 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (408)
                        .+..+...+.+++|++++-.   ++ +|++ +..+.|.+|++...+ ...........       .         ...
T Consensus        78 --~l~~i~~~~~~g~V~ai~~~---~~-~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~-------~---------i~s  134 (321)
T PF03178_consen   78 --KLKLIHSTEVKGPVTAICSF---NG-RLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPF-------Y---------ITS  134 (321)
T ss_dssp             --EEEEEEEEEESS-EEEEEEE---TT-EEEE-EETTEEEEEEEETTSSEEEEEEE-BSS-------S---------EEE
T ss_pred             --EEEEEEEEeecCcceEhhhh---CC-EEEE-eecCEEEEEEccCcccchhhheecceE-------E---------EEE
Confidence              01111122233779998874   24 4444 345899999999887 55544443211       0         122


Q ss_pred             EccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEE
Q 015363          179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRIN  257 (408)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~  257 (408)
                      ....+..+            +.|+....+.++. ........    ...-.......++++.+-++++.++.+ .+|.+.
T Consensus       135 l~~~~~~I------------~vgD~~~sv~~~~-~~~~~~~l----~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~  197 (321)
T PF03178_consen  135 LSVFKNYI------------LVGDAMKSVSLLR-YDEENNKL----ILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF  197 (321)
T ss_dssp             EEEETTEE------------EEEESSSSEEEEE-EETTTE-E----EEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred             EeccccEE------------EEEEcccCEEEEE-EEccCCEE----EEEEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence            22334444            7777777777654 22211100    000012234568888888666788888 899999


Q ss_pred             EEeCCCC------Cc-eeeEeecCCCcccCCcCCeEEE---EEcC--CCCc-----eEEEEeCCCeEEEE
Q 015363          258 LWNLEIS------NQ-SFNIVDVKPANMEDLTEVITSA---EFHP--THCN-----MLAYSSSKGSIRLI  310 (408)
Q Consensus       258 iwd~~~~------~~-~~~~~~~~~~~~~~~~~~v~~~---~~~p--~~~~-----~l~s~~~dg~i~iw  310 (408)
                      ++.....      +. .+....    .+ .....|+++   ++.|  .+..     .++.++.+|.|...
T Consensus       198 ~l~~~~~~~~~~~~~~~L~~~~----~f-~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  198 VLRYNPEIPNSRDGDPKLERIS----SF-HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEE-SS-SSTTTTTTBEEEEE----EE-E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEECCCCcccccccccceeEE----EE-ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            9987621      11 111110    01 123556666   5555  2212     47778889988843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.08  E-value=1.8  Score=41.73  Aligned_cols=112  Identities=13%  Similarity=0.183  Sum_probs=66.1

Q ss_pred             CCCEEEEe-cCCeEEEEeCCC-------C----CceeeEeecCCCcccCCcCCeEEEEEc--CCCCceEEEEeCCCeEEE
Q 015363          244 DGETFISA-DDLRINLWNLEI-------S----NQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRL  309 (408)
Q Consensus       244 ~~~~l~~~-~d~~i~iwd~~~-------~----~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~dg~i~i  309 (408)
                      ....|+.+ +||.|.+|.++.       .    ........++|.-...-...+++++++  ... +++|++++...|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEEEecCCceEEE
Confidence            44677777 999999997632       1    000000112221111234568899998  777 89999998888888


Q ss_pred             EEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC-----C-EEEEeC-CCeEEEEEC
Q 015363          310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-----R-HILSRD-YMTLKLWDI  369 (408)
Q Consensus       310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg-----~-~l~s~~-d~~v~~wd~  369 (408)
                      |-.......   ......+          .|...|.+|+|-++.     . +|++++ .|.+.+|++
T Consensus       192 Faf~l~~~r---~~~~~s~----------~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDER---FYHVPSH----------QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccc---ccccccc----------ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            866542110   0111111          123568899998743     2 555566 599999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.07  E-value=0.57  Score=43.25  Aligned_cols=117  Identities=11%  Similarity=0.213  Sum_probs=71.1

Q ss_pred             cceEEEEeCCCC-----CEEEEecCCeEEEEeCCCCCce------eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe
Q 015363          234 YHINSISNNSDG-----ETFISADDLRINLWNLEISNQS------FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS  302 (408)
Q Consensus       234 ~~v~~i~~~~~~-----~~l~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  302 (408)
                      ..|..+.|.|-+     .+||+--...|.+|.+......      .++-+++. .+.-   -...+.|+|.. .+|+.-.
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e-~~pv---LpQGCVWHPk~-~iL~VLT  131 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE-PFPV---LPQGCVWHPKK-AILTVLT  131 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC-Cccc---CCCcccccCCC-ceEEEEe
Confidence            568899999863     4555557899999998622111      11111100 0111   11357899998 7777766


Q ss_pred             CCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe--CCCeEEEEECC
Q 015363          303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DYMTLKLWDIN  370 (408)
Q Consensus       303 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~d~~v~~wd~~  370 (408)
                      ....-.+++++......  -..+.+             .+.|.|.+|.+||+.|+.+  +-=.-++||-.
T Consensus       132 ~~dvSV~~sV~~d~srV--kaDi~~-------------~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSSRV--KADIKT-------------SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cCceeEeeeeeeCCceE--EEeccC-------------CceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            66555566766543210  012222             2679999999999998876  33556788865

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.01  E-value=1.2  Score=41.25  Aligned_cols=50  Identities=12%  Similarity=0.187  Sum_probs=34.5

Q ss_pred             EEEccCCCEEEEeCC--CeEEEEECCCC-CCceeeeeecccccceEEecCCCe
Q 015363          347 IKFARNGRHILSRDY--MTLKLWDINMD-SGPVATFQVHEHLRPKVMHSSKNY  396 (408)
Q Consensus       347 ~~~spdg~~l~s~~d--~~v~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  396 (408)
                      ++|+|....+|.++.  +.|.||.+... ..-++.++-...+|++=-+|..+.
T Consensus       344 iAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdk  396 (671)
T PF15390_consen  344 IAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDK  396 (671)
T ss_pred             eeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCC
Confidence            689999999999875  89999988642 244666666666655444444444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.88  E-value=2.8  Score=37.84  Aligned_cols=203  Identities=8%  Similarity=0.042  Sum_probs=118.6

Q ss_pred             EEEEECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeE
Q 015363           39 SAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK  117 (408)
Q Consensus        39 ~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  117 (408)
                      ..++.++.+. ..++...++.|.+.|..+....                      .....+              .....
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~----------------------~~~~vG--------------~~P~~  120 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL----------------------GSIPVG--------------LGPVG  120 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCccccee----------------------eEeeec--------------cCCce
Confidence            3567777776 4444445678999996554321                      001111              12566


Q ss_pred             EEEeecCCCcEEEEEeC---CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          118 IRWCQSANSALYLLSTN---DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       118 v~~~p~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      +++.|.  ++.+.++..   ++++.+.|..+.+..........                +..+++.|+|..+        
T Consensus       121 ~~~~~~--~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~----------------P~~~a~~p~g~~v--------  174 (381)
T COG3391         121 LAVDPD--GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT----------------PTGVAVDPDGNKV--------  174 (381)
T ss_pred             EEECCC--CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC----------------cceEEECCCCCeE--------
Confidence            788544  656655543   78899999888877665333211                1268899999876        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC--CeEEEEeCCCCCceeeE
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNI  270 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d--~~i~iwd~~~~~~~~~~  270 (408)
                         .++-..++.|.+.+ ........ ......  ..-......+.++|++..+...  .+  +.+...|..........
T Consensus       175 ---yv~~~~~~~v~vi~-~~~~~v~~-~~~~~~--~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~  247 (381)
T COG3391         175 ---YVTNSDDNTVSVID-TSGNSVVR-GSVGSL--VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD  247 (381)
T ss_pred             ---EEEecCCCeEEEEe-CCCcceec-cccccc--cccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec
Confidence               23335677777766 33322211 110000  1112334578999999977765  23  58888888843322211


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEE-eCCCeEEEEEcCCCcee
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALC  318 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~  318 (408)
                      .      ..+.. ....+..+|+| ..+.+. ...+.+.+-|..+....
T Consensus       248 ~------~~~~~-~~~~v~~~p~g-~~~yv~~~~~~~V~vid~~~~~v~  288 (381)
T COG3391         248 L------PVGSG-APRGVAVDPAG-KAAYVANSQGGTVSVIDGATDRVV  288 (381)
T ss_pred             c------ccccC-CCCceeECCCC-CEEEEEecCCCeEEEEeCCCCcee
Confidence            1      11111 44678999999 665555 44588999998887553

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.82  E-value=1.1  Score=42.60  Aligned_cols=90  Identities=12%  Similarity=0.269  Sum_probs=57.4

Q ss_pred             CcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (408)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   92 (408)
                      ....|.....|...        ....+-+.-|.-++.-++-+....+.|||...+..                     ++
T Consensus        15 ~~~~w~~t~~~~T~--------i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l---------------------E~   65 (631)
T PF12234_consen   15 NKIEWLLTSTFETG--------ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL---------------------EY   65 (631)
T ss_pred             CeEEEEEEEEEecC--------CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEE---------------------EE
Confidence            45567766554422        12334444444455444444445899999876642                     12


Q ss_pred             eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 015363           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ  144 (408)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~  144 (408)
                      ...|.. .            +.|.++.|...++|+.+++.+..+.|.++.-.
T Consensus        66 ~~~f~~-~------------~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   66 EESFSE-D------------DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             eeeecC-C------------CceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence            223321 2            67999999999999999999999999998643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.81  E-value=0.8  Score=40.40  Aligned_cols=116  Identities=13%  Similarity=0.177  Sum_probs=59.5

Q ss_pred             ceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC----CCceEEEEeCC------
Q 015363          235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT----HCNMLAYSSSK------  304 (408)
Q Consensus       235 ~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~~~d------  304 (408)
                      ..+.|+|.|+|++|++-..|.|++++.. +.....+..+. ............++++|+    + .+.++.+..      
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~-~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVFADGERGLLGIAFHPDFASNG-YLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC--EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-cccccccCCcccceeccccCCCC-EEEEEEEcccCCCCC
Confidence            4578999999988887789999999943 33212222221 113334567899999995    4 444444422      


Q ss_pred             --CeEEEEEcCCCc-eecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363          305 --GSIRLIDMRQSA-LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  359 (408)
Q Consensus       305 --g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~  359 (408)
                        ..|.-|....+. ........+.....    ..-..|  .-..|.|.|||.+.++.
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~----~~~~~H--~g~~l~fgpDG~LYvs~  131 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPD----TSSGNH--NGGGLAFGPDGKLYVSV  131 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-----CSSSS---EEEEEE-TTSEEEEEE
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCC----CCCCCC--CCccccCCCCCcEEEEe
Confidence              245555554331 11000011111100    001122  34569999999766654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.66  E-value=2.3  Score=35.81  Aligned_cols=112  Identities=12%  Similarity=0.147  Sum_probs=61.1

Q ss_pred             ceEEEEeCCCCCEEEEe-cCCeEEEEe-CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe---CCCeEEE
Q 015363          235 HINSISNNSDGETFISA-DDLRINLWN-LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRL  309 (408)
Q Consensus       235 ~v~~i~~~~~~~~l~~~-~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~i  309 (408)
                      .+....|++++...+.. .+...+++. ..........++     .......|..++++||| ..+|...   .++.|.+
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~-----~~~~~~~I~~l~vSpDG-~RvA~v~~~~~~~~v~v  140 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD-----WPGLRGRITALRVSPDG-TRVAVVVEDGGGGRVYV  140 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec-----ccccCCceEEEEECCCC-cEEEEEEecCCCCeEEE
Confidence            57778999998877776 556666663 222222211111     11112279999999999 5554443   2567776


Q ss_pred             EEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363          310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  359 (408)
Q Consensus       310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~  359 (408)
                      --+.....- .+ ..+...     ..........+.+++|.+++.+++.+
T Consensus       141 a~V~r~~~g-~~-~~l~~~-----~~~~~~~~~~v~~v~W~~~~~L~V~~  183 (253)
T PF10647_consen  141 AGVVRDGDG-VP-RRLTGP-----RRVAPPLLSDVTDVAWSDDSTLVVLG  183 (253)
T ss_pred             EEEEeCCCC-Cc-ceeccc-----eEecccccCcceeeeecCCCEEEEEe
Confidence            654322110 00 011000     00011113578999999999988877

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.56  E-value=5.4  Score=39.57  Aligned_cols=102  Identities=12%  Similarity=0.092  Sum_probs=59.4

Q ss_pred             eEEEEEcCCCCceEEEEeC----------CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363          285 ITSAEFHPTHCNMLAYSSS----------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       285 v~~~~~~p~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                      +.++.|..|...++++|+.          .|+|.++.+...+.+    +....+.-          .+.+.++.-- +|+
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L----~~v~e~~v----------~Gav~aL~~f-ngk  841 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL----ELVAETVV----------KGAVYALVEF-NGK  841 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce----eeeeeeee----------ccceeehhhh-CCe
Confidence            4556688774378887753          478888887763222    22222211          1445555432 566


Q ss_pred             EEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCeee-eeece
Q 015363          355 HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM-GLDNI  403 (408)
Q Consensus       355 ~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~  403 (408)
                      +||+-. ..|++|+..+ .+.++.-..+......+.-...+|.+ ..|-+
T Consensus       842 llA~In-~~vrLye~t~-~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm  889 (1096)
T KOG1897|consen  842 LLAGIN-QSVRLYEWTT-ERELRIECNISNPIIALDLQVKGDEIAVGDLM  889 (1096)
T ss_pred             EEEecC-cEEEEEEccc-cceehhhhcccCCeEEEEEEecCcEEEEeecc
Confidence            665444 4899999987 46777666666665555544445543 33443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.54  E-value=4.2  Score=38.21  Aligned_cols=29  Identities=10%  Similarity=0.208  Sum_probs=22.5

Q ss_pred             CCCEEEEeC-CCeEEEEECCCCCCceeeeee
Q 015363          352 NGRHILSRD-YMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       352 dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      .+..|+.++ ||.|+.+|.++ |+.+-.++.
T Consensus       405 ~g~~v~~g~~dG~l~ald~~t-G~~lW~~~~  434 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATT-GKELWKFRT  434 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCC-CceeeEEEC
Confidence            456677764 79999999998 788777665

The alignment model contains an 8-bladed beta-propeller.

>PHA02713 hypothetical protein; Provisional

Probab=94.50  E-value=1.5  Score=41.88  Aligned_cols=66  Identities=8%  Similarity=0.031  Sum_probs=36.2

Q ss_pred             CCCEEEEe-cC------CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC--eEEEEEcCC
Q 015363          244 DGETFISA-DD------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQ  314 (408)
Q Consensus       244 ~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg--~i~iwd~~~  314 (408)
                      ++.+.+.| .+      ..+..||.++.++-....     .+.........+.+  ++ .+.++|+.++  .+..||..+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-----~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT-----TTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-----ccCcccccceeEEE--CC-EEEEEeeecceeehhhcCccc
Confidence            45666665 32      246778887412222211     12222222223333  56 8899999888  677788877


Q ss_pred             Cce
Q 015363          315 SAL  317 (408)
Q Consensus       315 ~~~  317 (408)
                      .+-
T Consensus       535 ~~W  537 (557)
T PHA02713        535 YEW  537 (557)
T ss_pred             ccc
Confidence            653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.49  E-value=0.38  Score=39.43  Aligned_cols=79  Identities=9%  Similarity=0.087  Sum_probs=52.3

Q ss_pred             EcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEEC
Q 015363          290 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI  369 (408)
Q Consensus       290 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~  369 (408)
                      +..++ .+|++-+.+|.+++||+.+++....++....--.......  ......|..+.++.+|.-|++-++|..+.|+.
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~   94 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP   94 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhccccccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence            34456 7788889999999999999876533211110000000000  02346789999999999998888888999998


Q ss_pred             CC
Q 015363          370 NM  371 (408)
Q Consensus       370 ~~  371 (408)
                      +.
T Consensus        95 ~L   96 (219)
T PF07569_consen   95 DL   96 (219)
T ss_pred             cc
Confidence            75

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.43  E-value=0.083  Score=42.25  Aligned_cols=101  Identities=12%  Similarity=0.044  Sum_probs=49.9

Q ss_pred             cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCc
Q 015363          199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN  277 (408)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  277 (408)
                      +.|+.+|.|.+|. . +......    .........-...|..-.++.+..++ .|+.|+.|++. ..+....       
T Consensus        74 ~vG~~dg~v~~~n-~-n~~g~~~----d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~-p~k~~g~-------  139 (238)
T KOG2444|consen   74 MVGTSDGAVYVFN-W-NLEGAHS----DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK-PNKVLGY-------  139 (238)
T ss_pred             EeecccceEEEec-C-CccchHH----HhhhcccccceeccccccccceeEEeccCCceeeeccc-cCceeee-------
Confidence            7889999999987 2 2111100    00001111112222223344466666 89999999998 3333322       


Q ss_pred             ccCCc-CCeEEEEEcCCCCceEEEE--eCCCeEEEEEcCC
Q 015363          278 MEDLT-EVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQ  314 (408)
Q Consensus       278 ~~~~~-~~v~~~~~~p~~~~~l~s~--~~dg~i~iwd~~~  314 (408)
                      ...|. .++.....+-.+ .+++.+  +.|..++.|++..
T Consensus       140 ~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  140 VGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence            12233 233333333333 455555  5555666666553

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.12  E-value=2.7  Score=37.72  Aligned_cols=118  Identities=12%  Similarity=0.134  Sum_probs=73.7

Q ss_pred             cccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEE
Q 015363          232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  310 (408)
Q Consensus       232 ~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  310 (408)
                      ..++|.++.|++|.+.+|+- .+.+|.+++.. +.+......   .........|....|..+-  -+|..+..| +-+|
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~-~d~~~l~~~---~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y  137 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI-PDNSQLEYT---QECKTKNANILGFCWTSST--EIAFITDQG-IEFY  137 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecC-CCchhhHHH---HHhccCcceeEEEEEecCe--eEEEEecCC-eEEE
Confidence            34689999999999999998 99999999985 332221111   1122334558888998663  455555444 6777


Q ss_pred             EcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-C-C-CeEEEEECCC
Q 015363          311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-Y-MTLKLWDINM  371 (408)
Q Consensus       311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~-d-~~v~~wd~~~  371 (408)
                      .....+.   .++..+.+            ...|+-..|.++-+.+.-+ + . +++.=+.+++
T Consensus       138 ~v~pekr---slRlVks~------------~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  138 QVLPEKR---SLRLVKSH------------NLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             EEchhhh---hhhhhhhc------------ccCccEEEEccccceEeeeccccccccccEEEee
Confidence            6655432   22444444            3567778888887755433 2 2 5555565654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.00  E-value=3.8  Score=35.67  Aligned_cols=72  Identities=13%  Similarity=0.198  Sum_probs=42.5

Q ss_pred             EEEeCCCCCEEEEe---------cCC--eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEE-eCCC
Q 015363          238 SISNNSDGETFISA---------DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKG  305 (408)
Q Consensus       238 ~i~~~~~~~~l~~~---------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg  305 (408)
                      -+++++..+.|.+-         .|+  .|.++|+.+.+ .+..++     +   ...+.+|+.+.+...+|++. ..++
T Consensus       242 ~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k-rv~Ri~-----l---~~~~~Si~Vsqd~~P~L~~~~~~~~  312 (342)
T PF06433_consen  242 LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK-RVARIP-----L---EHPIDSIAVSQDDKPLLYALSAGDG  312 (342)
T ss_dssp             -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE-EEEEEE-----E---EEEESEEEEESSSS-EEEEEETTTT
T ss_pred             eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe-EEEEEe-----C---CCccceEEEccCCCcEEEEEcCCCC
Confidence            46777655444432         122  46677887443 333322     1   23467899998875566544 4589


Q ss_pred             eEEEEEcCCCcee
Q 015363          306 SIRLIDMRQSALC  318 (408)
Q Consensus       306 ~i~iwd~~~~~~~  318 (408)
                      .|.+||..+++.+
T Consensus       313 ~l~v~D~~tGk~~  325 (342)
T PF06433_consen  313 TLDVYDAATGKLV  325 (342)
T ss_dssp             EEEEEETTT--EE
T ss_pred             eEEEEeCcCCcEE
Confidence            9999999999765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.92  E-value=4.4  Score=36.04  Aligned_cols=105  Identities=11%  Similarity=0.131  Sum_probs=51.3

Q ss_pred             cCCeEEEEEcCCCCceEEEEeC---CC-eEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEE
Q 015363          282 TEVITSAEFHPTHCNMLAYSSS---KG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL  357 (408)
Q Consensus       282 ~~~v~~~~~~p~~~~~l~s~~~---dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~  357 (408)
                      ..++..+.|+|..+.+|+.|-.   +. .-|||-+++.....++++   .+..          ...+..=-|.|||..|.
T Consensus       187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~---~~~~----------~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH---RRME----------GESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------T----------TEEEEEEEE-TTSS-EE
T ss_pred             CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee---cCCC----------CcccccccccCCCCEEE
Confidence            5677899999998788888754   22 135565554322212222   1110          13455667999998765


Q ss_pred             E-e----C-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeec
Q 015363          358 S-R----D-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDN  402 (408)
Q Consensus       358 s-~----~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  402 (408)
                      - +    . +..|.-+|..+ ++........  ...-+.+..++.+++.|-
T Consensus       254 y~~~~~~~~~~~i~~~d~~t-~~~~~~~~~p--~~~H~~ss~Dg~L~vGDG  301 (386)
T PF14583_consen  254 YDSYTPGGQDFWIAGYDPDT-GERRRLMEMP--WCSHFMSSPDGKLFVGDG  301 (386)
T ss_dssp             EEEEETTT--EEEEEE-TTT---EEEEEEE---SEEEEEE-TTSSEEEEEE
T ss_pred             EEeecCCCCceEEEeeCCCC-CCceEEEeCC--ceeeeEEcCCCCEEEecC
Confidence            3 2    2 35677778877 3433222221  233444556667776653

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.91  E-value=6.1  Score=39.52  Aligned_cols=130  Identities=12%  Similarity=0.141  Sum_probs=78.8

Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363          253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  332 (408)
Q Consensus       253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  332 (408)
                      +|.++.|++-..+..++++.     -..-.+.+  .+..|.. .++.+| -...+++||+...+.+.+....+  -    
T Consensus       911 ~g~~ytyk~~~~g~~lellh-----~T~~~~~v--~Ai~~f~-~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~--~----  975 (1205)
T KOG1898|consen  911 SGFVYTYKFVRNGDKLELLH-----KTEIPGPV--GAICPFQ-GRVLAG-VGRFLRLYDLGKKKLLRKCELKF--I----  975 (1205)
T ss_pred             CCceEEEEEEecCceeeeee-----ccCCCccc--eEEeccC-CEEEEe-cccEEEEeeCChHHHHhhhhhcc--C----
Confidence            45567776654444443321     11122333  5666777 444443 46789999998876553211111  1    


Q ss_pred             CccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCCCCCceeeeeecccc--cceEEecCCCeeeeeeceeeec
Q 015363          333 TRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL--RPKVMHSSKNYFMGLDNIHTLY  407 (408)
Q Consensus       333 ~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~  407 (408)
                              ...|..+.+.  +..|+.|+- -.|.++..+.+++.+..+-..+..  ...+..+..+.+.+.|||+.+|
T Consensus       976 --------p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~ 1043 (1205)
T KOG1898|consen  976 --------PNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIA 1043 (1205)
T ss_pred             --------ceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEE
Confidence                    2568888874  677888853 566666555556777777666555  4555556777889999999876

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=93.87  E-value=4  Score=35.44  Aligned_cols=135  Identities=10%  Similarity=0.110  Sum_probs=78.1

Q ss_pred             cceEEEEeCCCCCEEEEe-c-----C----CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC
Q 015363          234 YHINSISNNSDGETFISA-D-----D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS  303 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~-----d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  303 (408)
                      ...+.+.+.|+|.+.++. .     .    ..-.+|-+...+...+.       +..+-..-+.|+||||+ +.|..+..
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-------~~~~~~~~NGla~SpDg-~tly~aDT  182 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-------LDDDLTIPNGLAFSPDG-KTLYVADT  182 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-------ecCcEEecCceEECCCC-CEEEEEeC
Confidence            456678889999888865 4     0    11133433311222222       23334445789999999 55555544


Q ss_pred             -CCeEEEEEcCC--CceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CC-CeEEEEECCCCCCceee
Q 015363          304 -KGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVAT  378 (408)
Q Consensus       304 -dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d-~~v~~wd~~~~~~~~~~  378 (408)
                       .+.|..|++..  +..-.+....           .+....+..-.++...+|.+-+++ .. +.|..|+-+  ++++..
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~-----------~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~~~  249 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFV-----------DFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLLGE  249 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEE-----------EccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEEEE
Confidence             58888888763  2111000001           111112455667778888877655 34 499999986  688888


Q ss_pred             eeecccccceE
Q 015363          379 FQVHEHLRPKV  389 (408)
Q Consensus       379 ~~~~~~~~~~~  389 (408)
                      +..+.....++
T Consensus       250 i~lP~~~~t~~  260 (307)
T COG3386         250 IKLPVKRPTNP  260 (307)
T ss_pred             EECCCCCCccc
Confidence            88875433333

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.81  E-value=4.5  Score=35.76  Aligned_cols=70  Identities=13%  Similarity=0.145  Sum_probs=39.1

Q ss_pred             CCeEEEEEcC-------CCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCE
Q 015363          283 EVITSAEFHP-------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH  355 (408)
Q Consensus       283 ~~v~~~~~~p-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~  355 (408)
                      ..+..+.|..       .| .+|++.-..+.|....+.....+......+            ......+.++++.|||.+
T Consensus       253 ~ap~G~~~y~g~~fp~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~r~~~v~~~pDG~L  319 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRG-DLFVADYGGGRIWRLDLDEDGSVTEEEEFL------------GGFGGRPRDVAQGPDGAL  319 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEEEEEC------------TTSSS-EEEEEEETTSEE
T ss_pred             cccCceEEECCccCccccC-cEEEecCCCCEEEEEeeecCCCccceEEcc------------ccCCCCceEEEEcCCCeE
Confidence            4456666653       23 456655556778887776553221111111            122347999999999998


Q ss_pred             EEEeC-CCeEE
Q 015363          356 ILSRD-YMTLK  365 (408)
Q Consensus       356 l~s~~-d~~v~  365 (408)
                      .++.+ +|.|.
T Consensus       320 yv~~d~~G~iy  330 (331)
T PF07995_consen  320 YVSDDSDGKIY  330 (331)
T ss_dssp             EEEE-TTTTEE
T ss_pred             EEEECCCCeEe
Confidence            88765 57663

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=93.55  E-value=3.3  Score=38.00  Aligned_cols=60  Identities=10%  Similarity=0.070  Sum_probs=38.3

Q ss_pred             cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC
Q 015363          234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH  294 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  294 (408)
                      ...+.|+|.|++++|++- ..|+|++++..... ......+..............|+++|+-
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~-~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGE-VKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc-eeeeecCCceeccCCCCceeeEEECCCc
Confidence            456789999999998888 47999999865322 2111111110011125668899999884

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.52  E-value=9  Score=38.35  Aligned_cols=74  Identities=15%  Similarity=0.135  Sum_probs=49.2

Q ss_pred             cceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363          234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  313 (408)
                      ..-..|.|.++.+.|+.++...+.++|++.......++      .......|..+.-+|..+.+++.- ....|...++.
T Consensus       204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~------~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~  276 (765)
T PF10214_consen  204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLV------TAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVK  276 (765)
T ss_pred             CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhc------cCCChhheeeEEecCCccceEEEE-ecCeEEEEEcc
Confidence            34557889989889998888889999999544321121      233456788888888843333333 24678888887


Q ss_pred             C
Q 015363          314 Q  314 (408)
Q Consensus       314 ~  314 (408)
                      .
T Consensus       277 ~  277 (765)
T PF10214_consen  277 S  277 (765)
T ss_pred             C
Confidence            7

These proteins are found in fungi.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.42  E-value=3.7  Score=41.37  Aligned_cols=88  Identities=10%  Similarity=0.043  Sum_probs=52.2

Q ss_pred             cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCc
Q 015363          199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN  277 (408)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  277 (408)
                      +....|+.|++.. +.......     ..  ..-....++++|+|.|..++.| ..|++.-|-.. .. ....+.-  ..
T Consensus       172 av~l~dlsl~V~~-~~~~~~~v-----~s--~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-le-ik~~ip~--Pp  239 (1405)
T KOG3630|consen  172 AVDLSDLSLRVKS-TKQLAQNV-----TS--FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LE-IKSEIPE--PP  239 (1405)
T ss_pred             hhhccccchhhhh-hhhhhhhh-----cc--cCcccceeeEEeccccceeeEecCCCeEEEeecc-cc-eeecccC--CC
Confidence            5667777777655 22211111     11  1223568899999999999999 89999888665 22 1111110  11


Q ss_pred             ccCCcCCeEEEEEcCCCCceEEE
Q 015363          278 MEDLTEVITSAEFHPTHCNMLAY  300 (408)
Q Consensus       278 ~~~~~~~v~~~~~~p~~~~~l~s  300 (408)
                      ... ...|.++.|-... .++++
T Consensus       240 ~~e-~yrvl~v~Wl~t~-eflvv  260 (1405)
T KOG3630|consen  240 VEE-NYRVLSVTWLSTQ-EFLVV  260 (1405)
T ss_pred             cCC-CcceeEEEEecce-eEEEE
Confidence            111 5678999998776 45444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.21  E-value=7.6  Score=38.17  Aligned_cols=83  Identities=18%  Similarity=0.269  Sum_probs=54.0

Q ss_pred             cceEEEEeCCCCCEEEEecCCeEEEEeCCC----------CCc--eeeEeecCCCcc-cCCcCCeEEEEEcCCC--CceE
Q 015363          234 YHINSISNNSDGETFISADDLRINLWNLEI----------SNQ--SFNIVDVKPANM-EDLTEVITSAEFHPTH--CNML  298 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~----------~~~--~~~~~~~~~~~~-~~~~~~v~~~~~~p~~--~~~l  298 (408)
                      ..|..|.++|+|.+++......|.|-.+..          +..  ..+.+.+...-+ ..+...|..+.|+|.+  ...|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            568899999999999887444555554431          111  122222222112 2345678899999984  2678


Q ss_pred             EEEeCCCeEEEEEcCCCc
Q 015363          299 AYSSSKGSIRLIDMRQSA  316 (408)
Q Consensus       299 ~s~~~dg~i~iwd~~~~~  316 (408)
                      +.-..|+++|+||+....
T Consensus       165 ~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEecCCEEEEEecCCCC
Confidence            888899999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.79  E-value=3.1  Score=32.72  Aligned_cols=33  Identities=18%  Similarity=0.364  Sum_probs=25.6

Q ss_pred             cceeEEEEeec---CC-CcEEEEEeCCCeEEEEEcCC
Q 015363          113 EKINKIRWCQS---AN-SALYLLSTNDKTIKLWKVQE  145 (408)
Q Consensus       113 ~~v~~v~~~p~---~~-~~~l~~~~~d~~i~vwd~~~  145 (408)
                      ..|..++|||.   ++ +-+|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            37999999984   22 34677789999999998773

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.76  E-value=6.8  Score=34.87  Aligned_cols=104  Identities=14%  Similarity=0.125  Sum_probs=48.2

Q ss_pred             cccceEEEEeCCCCCEEEE-e----cCCe-EEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe---
Q 015363          232 HDYHINSISNNSDGETFIS-A----DDLR-INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---  302 (408)
Q Consensus       232 ~~~~v~~i~~~~~~~~l~~-~----~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---  302 (408)
                      ....+..+.|+|....+++ |    .+.. -++|=+++.+.....+.  .   ......+..=-|.|+|..+...+.   
T Consensus       186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~--~---~~~~e~~gHEfw~~DG~~i~y~~~~~~  260 (386)
T PF14583_consen  186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH--R---RMEGESVGHEFWVPDGSTIWYDSYTPG  260 (386)
T ss_dssp             ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTSS-EEEEEEETT
T ss_pred             cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee--c---CCCCcccccccccCCCCEEEEEeecCC
Confidence            3456778899997755543 4    2332 25565554444333211  1   112345666789999944333232   


Q ss_pred             -CCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363          303 -SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  358 (408)
Q Consensus       303 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s  358 (408)
                       .+..|.-+|..++...    ......              +-..+--++||+++|.
T Consensus       261 ~~~~~i~~~d~~t~~~~----~~~~~p--------------~~~H~~ss~Dg~L~vG  299 (386)
T PF14583_consen  261 GQDFWIAGYDPDTGERR----RLMEMP--------------WCSHFMSSPDGKLFVG  299 (386)
T ss_dssp             T--EEEEEE-TTT--EE----EEEEE---------------SEEEEEE-TTSSEEEE
T ss_pred             CCceEEEeeCCCCCCce----EEEeCC--------------ceeeeEEcCCCCEEEe
Confidence             1345777788776431    111111              2335556789988875

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.40  E-value=4.2  Score=37.16  Aligned_cols=101  Identities=22%  Similarity=0.237  Sum_probs=63.9

Q ss_pred             Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc
Q 015363          250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  328 (408)
Q Consensus       250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  328 (408)
                      .| ++..|.-.|.+..+..+.....+.  +.+ .....+..-..+|  ++|+++..|-|++||--.-..-    ..+++-
T Consensus       532 vGlS~~svFrIDPR~~gNKi~v~esKd--Y~t-Kn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAK----talP~l  602 (776)
T COG5167         532 VGLSDYSVFRIDPRARGNKIKVVESKD--YKT-KNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAK----TALPGL  602 (776)
T ss_pred             EeecccceEEecccccCCceeeeeehh--ccc-cccccccccccCc--eEEEecCCCceeeehhhcchhh----hcCccc
Confidence            45 777777778776554444432221  111 1223344444455  8999999999999995432110    222222


Q ss_pred             cCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363          329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       329 ~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~  371 (408)
                                  ...|..+..+.+|++|++.....+.+-|+.-
T Consensus       603 ------------G~aIk~idvta~Gk~ilaTCk~yllL~d~~i  633 (776)
T COG5167         603 ------------GDAIKHIDVTANGKHILATCKNYLLLTDVPI  633 (776)
T ss_pred             ------------ccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence                        4679999999999998887666888888863

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.31  E-value=12  Score=36.49  Aligned_cols=74  Identities=8%  Similarity=0.170  Sum_probs=48.6

Q ss_pred             cceEEEEeC--CCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC--Cc---eEEEEeCCC
Q 015363          234 YHINSISNN--SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH--CN---MLAYSSSKG  305 (408)
Q Consensus       234 ~~v~~i~~~--~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~---~l~s~~~dg  305 (408)
                      ..+.+++++  ...+++|++ ....|.||-...........     .-..+...|.+|+|-++.  +.   .+++++-.|
T Consensus       164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~-----~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G  238 (717)
T PF08728_consen  164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV-----PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISG  238 (717)
T ss_pred             CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc-----cccccccCCCeeEeecCCCCCccceEEEEEeccC
Confidence            357788888  778888888 67778777665321111110     011245567889987654  12   778888899


Q ss_pred             eEEEEEc
Q 015363          306 SIRLIDM  312 (408)
Q Consensus       306 ~i~iwd~  312 (408)
                      .+.+|++
T Consensus       239 ~v~~~~I  245 (717)
T PF08728_consen  239 EVWTFKI  245 (717)
T ss_pred             cEEEEEE
Confidence            9999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.86  E-value=7.8  Score=37.14  Aligned_cols=30  Identities=17%  Similarity=0.226  Sum_probs=20.8

Q ss_pred             CCcEEEEEeCCC-----eEEEEEcCCCcEEEEecc
Q 015363          125 NSALYLLSTNDK-----TIKLWKVQEKKVKKVFDW  154 (408)
Q Consensus       125 ~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~~  154 (408)
                      +|.+.|+|+.||     ++-.||..+.+...+...
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m  414 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM  414 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCC
Confidence            377889999886     467778777766554433

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.66  E-value=1.5  Score=34.45  Aligned_cols=31  Identities=26%  Similarity=0.344  Sum_probs=26.0

Q ss_pred             CeEEEEEcCCC-----CceEEEEeCCCeEEEEEcCC
Q 015363          284 VITSAEFHPTH-----CNMLAYSSSKGSIRLIDMRQ  314 (408)
Q Consensus       284 ~v~~~~~~p~~-----~~~l~s~~~dg~i~iwd~~~  314 (408)
                      .+..++|||.|     ..+||+.+.++.|.||.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999965     35899999999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.65  E-value=2.6  Score=37.90  Aligned_cols=68  Identities=7%  Similarity=-0.059  Sum_probs=32.9

Q ss_pred             cceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcc---------c--CCcCCeEEEEEcCCCCceEEE
Q 015363          234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANM---------E--DLTEVITSAEFHPTHCNMLAY  300 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~---------~--~~~~~v~~~~~~p~~~~~l~s  300 (408)
                      .-|+.|..|.|.++|..+  -.|.|+.||+........+-++.....         .  .-.+...-+..|.||.++.+|
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            457899999999999876  799999999997666554433211100         0  112234567788888444444


Q ss_pred             E
Q 015363          301 S  301 (408)
Q Consensus       301 ~  301 (408)
                      .
T Consensus       392 n  392 (461)
T PF05694_consen  392 N  392 (461)
T ss_dssp             -
T ss_pred             e
Confidence            3

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.44  E-value=0.82  Score=40.79  Aligned_cols=31  Identities=16%  Similarity=0.174  Sum_probs=26.5

Q ss_pred             ceeEEEEEccCCCEEEEeCCCeEEEEECCCC
Q 015363          342 ASISDIKFARNGRHILSRDYMTLKLWDINMD  372 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~  372 (408)
                      ..+.-+++||++.+|++-+.|.++++.+++.
T Consensus       358 ~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr  388 (733)
T COG4590         358 QAPQLVAMSPNQAYLLSEDQGKIRLAQLENR  388 (733)
T ss_pred             cCcceeeeCcccchheeecCCceEEEEecCC
Confidence            3566789999999999888899999999874

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.43  E-value=3.9  Score=37.08  Aligned_cols=36  Identities=25%  Similarity=0.170  Sum_probs=31.1

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCC
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD   69 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~   69 (408)
                      ....+.+|..+|++++.|+...-|+|.|+|+.++..
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v  341 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV  341 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence            456689999999999999988889999999987753

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.28  E-value=8.1  Score=32.58  Aligned_cols=159  Identities=12%  Similarity=0.163  Sum_probs=84.7

Q ss_pred             ceEEEEECCCCCeEEEee---cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           37 IISAIEFDKSGDHLATGD---RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      .+.+.+++++++.+|...   ....+.++...+...                        ..+.+              .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~------------------------~~~~g--------------~   66 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR------------------------PVLTG--------------G   66 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce------------------------eeccC--------------C
Confidence            678999999999776655   223444444332211                        11122              2


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEE-cCCCcEEEE-eccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWK-VQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd-~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      .+....|.++  +...+....+...+++. ..++..... ......      .+.|.       .+.++|||..+..   
T Consensus        67 ~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~------~~~I~-------~l~vSpDG~RvA~---  128 (253)
T PF10647_consen   67 SLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGL------RGRIT-------ALRVSPDGTRVAV---  128 (253)
T ss_pred             ccccccccCC--CCEEEEEcCCCceEEEEecCCCcceeEEeccccc------CCceE-------EEEECCCCcEEEE---
Confidence            3777888654  66666656566666664 233322211 111100      01233       6899999998732   


Q ss_pred             cccCccccCCCCCceeeeceeeecccc--ccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQET--NLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINL  258 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~i  258 (408)
                            +.....++.|.+--+....+.  .....+... .......+..++|.+++.+++.+  .+..+..
T Consensus       129 ------v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~-~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  129 ------VVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV-APPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             ------EEecCCCCeEEEEEEEeCCCCCcceeccceEe-cccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence                  222334566666552333333  111122222 12334678999999999888876  4443433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.87  E-value=8  Score=34.93  Aligned_cols=129  Identities=12%  Similarity=0.078  Sum_probs=76.5

Q ss_pred             eEEEEeCCCCCEEEEecCCeEEEEeCCCCCc--eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363          236 INSISNNSDGETFISADDLRINLWNLEISNQ--SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       236 v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  313 (408)
                      -+.+-|+..++.+++...|.+.-|-+...+.  +...       -....++|.++.|++|. +.+|+--.+.+|.+++..
T Consensus        25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSf-------dm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~   96 (657)
T KOG2377|consen   25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISF-------DMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFI   96 (657)
T ss_pred             ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCcee-------eecCCCceeEEEeccCc-ceEEEEecCceEEEEecC
Confidence            3445555555555554445555565542221  1111       12235689999999999 999999999999999884


Q ss_pred             CCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccc
Q 015363          314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                      .....     ....++       .+..+..|....|+.+ .-+|--++..+-+|....+.+.++..+.|..-
T Consensus        97 ~d~~~-----l~~~~~-------ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~n  155 (657)
T KOG2377|consen   97 PDNSQ-----LEYTQE-------CKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLN  155 (657)
T ss_pred             CCchh-----hHHHHH-------hccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccC
Confidence            43221     111111       1111346888999854 66666666667777776555555555555443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.80  E-value=1.5  Score=36.03  Aligned_cols=73  Identities=15%  Similarity=0.216  Sum_probs=48.4

Q ss_pred             eCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCccc-------CCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363          241 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME-------DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  312 (408)
Q Consensus       241 ~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  312 (408)
                      +...+.+|.+- .+|.+++||+.+.+..+..+.+.|. +.       .....|..+.++.+| .-+++-+ +|..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecc
Confidence            34467777766 9999999999965544433222211 11       345678899999888 6566554 578899987


Q ss_pred             CCCc
Q 015363          313 RQSA  316 (408)
Q Consensus       313 ~~~~  316 (408)
                      .-+.
T Consensus        95 ~L~~   98 (219)
T PF07569_consen   95 DLGC   98 (219)
T ss_pred             ccce
Confidence            7553

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.57  E-value=9.1  Score=32.98  Aligned_cols=130  Identities=11%  Similarity=0.149  Sum_probs=67.1

Q ss_pred             eEEEEeCCCCCEEEE--e--c-C--------CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCC-----ce
Q 015363          236 INSISNNSDGETFIS--A--D-D--------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-----NM  297 (408)
Q Consensus       236 v~~i~~~~~~~~l~~--~--~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-----~~  297 (408)
                      |..+...+.+++.+.  |  . .        -+|.+||+.+ .+.++.+.+.+.... ..+.+..+.+.....     ..
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t-~~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~a   80 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKT-NQLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFA   80 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTT-TCEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCC-CcEEEEEECChHHcc-cccccceEEEEccCCCCcceEE
Confidence            455666666665553  3  1 1        3788899994 457777766554343 356678888876321     22


Q ss_pred             EEEEeCCCeEEEEEcCCCceecccccccccccCCCCc---cccc----cccceeEEEEEcc---CCCEEEEeCCCeEEEE
Q 015363          298 LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR---SFFT----EIIASISDIKFAR---NGRHILSRDYMTLKLW  367 (408)
Q Consensus       298 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~h~~~i~~~~~sp---dg~~l~s~~d~~v~~w  367 (408)
                      .++=+..+-|.++|+.+++..    +.+..+..+.+.   ....    .....+..++.+|   +|++|+-+.-..-++|
T Consensus        81 YItD~~~~glIV~dl~~~~s~----Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly  156 (287)
T PF03022_consen   81 YITDSGGPGLIVYDLATGKSW----RVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLY  156 (287)
T ss_dssp             EEEETTTCEEEEEETTTTEEE----EEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEE
T ss_pred             EEeCCCcCcEEEEEccCCcEE----EEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEE
Confidence            333334568999999998653    333222222111   0000    1123367777766   7777776643334455


Q ss_pred             ECCC
Q 015363          368 DINM  371 (408)
Q Consensus       368 d~~~  371 (408)
                      .+.+
T Consensus       157 ~v~T  160 (287)
T PF03022_consen  157 RVPT  160 (287)
T ss_dssp             EEEH
T ss_pred             EEEH
Confidence            5543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.31  E-value=14  Score=33.58  Aligned_cols=113  Identities=11%  Similarity=0.150  Sum_probs=67.1

Q ss_pred             ccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCc----eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEE
Q 015363          233 DYHINSISNNSDGETFISADDLRINLWNLEISNQ----SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  308 (408)
Q Consensus       233 ~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  308 (408)
                      ...++.+.+.+++.+++++..|.+.. ....+..    .+...     ........+..+.|.+++ ..+++ +..|.+.
T Consensus       280 ~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~-----~~~~~~~~l~~v~~~~d~-~~~a~-G~~G~v~  351 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEA-----DIKSRGFGILDVGYRSKK-EAWAA-GGSGILL  351 (398)
T ss_pred             ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeec-----ccCCCCcceEEEEEcCCC-cEEEE-ECCCcEE
Confidence            35688999999999998887776543 3331221    11111     111122458899999887 65555 4677666


Q ss_pred             EEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEE
Q 015363          309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW  367 (408)
Q Consensus       309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~w  367 (408)
                      ... ..++.       ++.....      .........+.|.++++.+++|.+|.|.-|
T Consensus       352 ~s~-D~G~t-------W~~~~~~------~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        352 RST-DGGKS-------WKRDKGA------DNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             EeC-CCCcc-------eeEcccc------CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            553 33322       1111000      001245779999988999999998887655

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.08  E-value=12  Score=32.46  Aligned_cols=126  Identities=17%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             ccceEEEEeCCCCCEEEEecCCeE-EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 015363          233 DYHINSISNNSDGETFISADDLRI-NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  311 (408)
Q Consensus       233 ~~~v~~i~~~~~~~~l~~~~d~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  311 (408)
                      ...++.+..+++|++++++..|.+ .-||-.  .......      -..-...|..|.|+|++ .+.+.+ ..|.|++=+
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~------~r~~~~riq~~gf~~~~-~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPH------NRNSSRRIQSMGFSPDG-NLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEE------E--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEE------ccCccceehhceecCCC-CEEEEe-CCcEEEEcc
Confidence            366888889999999999955554 456654  2222221      12235779999999998 665644 888898877


Q ss_pred             cCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeee
Q 015363          312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      .....      ..+..+..+     ...-.-.+.+++|.+++...++|..|.+. ...+ .|+.-+..+.
T Consensus       214 ~~~~~------~~w~~~~~~-----~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~D-gGktW~~~~~  270 (302)
T PF14870_consen  214 DPDDG------ETWSEPIIP-----IKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTD-GGKTWQKDRV  270 (302)
T ss_dssp             -TTEE------EEE---B-T-----TSS--S-EEEEEESSSS-EEEEESTT-EE-EESS-TTSS-EE-GG
T ss_pred             CCCCc------cccccccCC-----cccCceeeEEEEecCCCCEEEEeCCccEE-EeCC-CCccceECcc
Confidence            21111      122111100     00001348999999999988888776443 3344 3666665554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.01  E-value=6.7  Score=39.67  Aligned_cols=102  Identities=11%  Similarity=0.034  Sum_probs=66.1

Q ss_pred             ceEEEEeCCCCCE-EEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363          235 HINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  312 (408)
Q Consensus       235 ~v~~i~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  312 (408)
                      ...++.|+|.-.. .+.. .|+.|++..+....+....       + .-....++++|+|.| ..++.|-..|++.-|..
T Consensus       157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-------~-p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-------F-PVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             ccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-------c-CcccceeeEEecccc-ceeeEecCCCeEEEeec
Confidence            3457788887533 3344 8999998887744333321       1 124557999999999 89999999999998865


Q ss_pred             CCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363          313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  358 (408)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s  358 (408)
                      .-...     ..+.+..       +.+ ...|.+|+|-..-.+|+.
T Consensus       228 ~leik-----~~ip~Pp-------~~e-~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  228 SLEIK-----SEIPEPP-------VEE-NYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             cccee-----ecccCCC-------cCC-CcceeEEEEecceeEEEE
Confidence            43211     1111111       001 257999999987777775

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.01  E-value=6.4  Score=40.39  Aligned_cols=81  Identities=19%  Similarity=0.333  Sum_probs=54.5

Q ss_pred             cccceEEEEeCCCCCEEEEecCCeEEEEeCC--CCC----ceeeEeecC--------C--Cccc-CCcCCeEEEEEcCCC
Q 015363          232 HDYHINSISNNSDGETFISADDLRINLWNLE--ISN----QSFNIVDVK--------P--ANME-DLTEVITSAEFHPTH  294 (408)
Q Consensus       232 ~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~--~~~----~~~~~~~~~--------~--~~~~-~~~~~v~~~~~~p~~  294 (408)
                      ....|+++....+|++|.+|.||.  +|.+.  ...    +..+.+...        |  ..+. .+..+|..+......
T Consensus       177 dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             CCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            346688999889999999996664  44432  100    000111000        0  1123 567789999999888


Q ss_pred             CceEEEEeCCCeEEEEEcCCC
Q 015363          295 CNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       295 ~~~l~s~~~dg~i~iwd~~~~  315 (408)
                       .++.+-+..++|.+||+...
T Consensus       255 -~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  255 -NILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             -ceeeeeccCceEEEEEccCC
Confidence             89999999999999999873

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=89.59  E-value=20  Score=34.43  Aligned_cols=30  Identities=17%  Similarity=0.316  Sum_probs=21.8

Q ss_pred             CcEEEEEeCC------CeEEEEEcCCCcEEEEeccC
Q 015363          126 SALYLLSTND------KTIKLWKVQEKKVKKVFDWN  155 (408)
Q Consensus       126 ~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~  155 (408)
                      +..+++|+.|      .++..||..+++........
T Consensus       333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~  368 (571)
T KOG4441|consen  333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN  368 (571)
T ss_pred             CEEEEEccccCCCcccceEEEecCCCCceeccCCcc
Confidence            5788889888      36778888888876644443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.55  E-value=8.6  Score=35.41  Aligned_cols=93  Identities=10%  Similarity=0.101  Sum_probs=53.1

Q ss_pred             CeEEEEEcCCCCceEEEEeCCCeEEEEEcC---------CCceecccccccccccCCCCcccccc-ccceeEEEEEccCC
Q 015363          284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMR---------QSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNG  353 (408)
Q Consensus       284 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~spdg  353 (408)
                      .|..+..+|.| ..++-.+.+|.+.++=-+         .++.... .+++.-.     ..+|.. -.-.+..++|+|+.
T Consensus       105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~-CRt~~i~-----~~~ftss~~ltl~Qa~WHP~S  177 (741)
T KOG4460|consen  105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVN-CRTTPVA-----ERFFTSSTSLTLKQAAWHPSS  177 (741)
T ss_pred             EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEE-EEeeccc-----ceeeccCCceeeeeccccCCc
Confidence            46778899999 777777788876665322         1211000 0111111     111111 12357789999965


Q ss_pred             ----CEEEEeCCCeEEEEECCCCCCceeeeeeccc
Q 015363          354 ----RHILSRDYMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       354 ----~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                          .+++-.+|..|++||+... ..+....+..+
T Consensus       178 ~~D~hL~iL~sdnviRiy~lS~~-telylqpgepg  211 (741)
T KOG4460|consen  178 ILDPHLVLLTSDNVIRIYSLSEP-TELYLQPGEPG  211 (741)
T ss_pred             cCCceEEEEecCcEEEEEecCCc-chhhccCCCcC
Confidence                4555568899999999874 44444444433

>PRK10115 protease 2; Provisional

Probab=89.13  E-value=25  Score=34.80  Aligned_cols=112  Identities=16%  Similarity=0.213  Sum_probs=63.9

Q ss_pred             cceEEEEeCCCCCEEEEe-c-----CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---
Q 015363          234 YHINSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---  304 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---  304 (408)
                      ..+..+.++|++++|+.+ +     ...|++.|+.++......       +..   .-..++|.+++ +.|+....+   
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-------i~~---~~~~~~w~~D~-~~~~y~~~~~~~  195 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-------LDN---VEPSFVWANDS-WTFYYVRKHPVT  195 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-------ccC---cceEEEEeeCC-CEEEEEEecCCC
Confidence            346778899999999876 2     236788888744321111       221   11469999999 555544332   


Q ss_pred             ---CeEEEEEcCCCceecccccccccccCCCCccccccccceeE-EEEEccCCCEEEEe--C--CCeEEEEECC
Q 015363          305 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-DIKFARNGRHILSR--D--YMTLKLWDIN  370 (408)
Q Consensus       305 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~spdg~~l~s~--~--d~~v~~wd~~  370 (408)
                         ..|+.+++.++...+.  ..++...            .... .+..+.|+++++..  +  ++.+.+++..
T Consensus       196 ~~~~~v~~h~lgt~~~~d~--lv~~e~~------------~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        196 LLPYQVWRHTIGTPASQDE--LVYEEKD------------DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             CCCCEEEEEECCCChhHCe--EEEeeCC------------CCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence               3677788877632111  2233221            1122 33344488876643  2  3789999954

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.97  E-value=0.11  Score=46.55  Aligned_cols=136  Identities=9%  Similarity=0.035  Sum_probs=85.4

Q ss_pred             eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD  253 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d  253 (408)
                      ...|-+++..+            +.+..+..+..|| -..       +..-.  .......-.++|+.++..++..  ..
T Consensus        39 ~~~w~~e~~nl------------avaca~tiv~~YD-~ag-------q~~le--~n~tg~aldm~wDkegdvlavlAek~   96 (615)
T KOG2247|consen   39 IHRWRPEGHNL------------AVACANTIVIYYD-KAG-------QVILE--LNPTGKALDMAWDKEGDVLAVLAEKT   96 (615)
T ss_pred             eeeEecCCCce------------ehhhhhhHHHhhh-hhc-------ceecc--cCCchhHhhhhhccccchhhhhhhcC
Confidence            45677777666            7777788888888 111       11000  1122344567888888777664  78


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccC-CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  332 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  332 (408)
                      +.+.+||+.+. ...++      .+.+ |..  .-+.|++-. ..++.+...+.+.|++..+.+..    ... |     
T Consensus        97 ~piylwd~n~e-ytqqL------E~gg~~s~--sll~wsKg~-~el~ig~~~gn~viynhgtsR~i----iv~-G-----  156 (615)
T KOG2247|consen   97 GPIYLWDVNSE-YTQQL------ESGGTSSK--SLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRI----IVM-G-----  156 (615)
T ss_pred             CCeeechhhhh-hHHHH------hccCcchH--HHHhhccCC-ccccccccccceEEEeccchhhh----hhh-c-----
Confidence            99999999832 22111      0111 222  227889888 78888888999999998876432    111 2     


Q ss_pred             CccccccccceeEEEEEccCCCEEEEe
Q 015363          333 TRSFFTEIIASISDIKFARNGRHILSR  359 (408)
Q Consensus       333 ~~~~~~~h~~~i~~~~~spdg~~l~s~  359 (408)
                            .|..++.+++|.+.+..+..+
T Consensus       157 ------kh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  157 ------KHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             ------ccccceeEEEecccceeeecC
Confidence                  135788999999877655543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=88.97  E-value=18  Score=33.08  Aligned_cols=54  Identities=11%  Similarity=0.064  Sum_probs=36.2

Q ss_pred             cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC
Q 015363          234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH  294 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  294 (408)
                      +++..+++||+++++|.- .+|.+.+.+.+-. +.+..+++     . -......|.|.-+.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~-----~-~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDT-----D-SKSPPKQMAWCGND  271 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeec-----C-cCCCCcEEEEECCC
Confidence            579999999999999987 8899999887633 33322221     1 12344567776544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.79  E-value=11  Score=30.42  Aligned_cols=153  Identities=12%  Similarity=0.176  Sum_probs=79.0

Q ss_pred             cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c---CC---eEEEE-eCCC---CCce
Q 015363          199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---DL---RINLW-NLEI---SNQS  267 (408)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~---d~---~i~iw-d~~~---~~~~  267 (408)
                      +.+.....|.+|+ +...+.    ..+..+  .--+.|..+..+..|+++++- .   ..   .+++| +.+.   ....
T Consensus        32 fva~~g~~Vev~~-l~~~~~----~~~~~F--~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~  104 (215)
T PF14761_consen   32 FVAASGCKVEVYD-LEQEEC----PLLCTF--STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP  104 (215)
T ss_pred             EEEcCCCEEEEEE-cccCCC----ceeEEE--cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence            4446667799999 542211    122222  222778999999999999985 2   22   45664 2221   1111


Q ss_pred             ee--Eee--cCCC------------cccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccc--cccccccc
Q 015363          268 FN--IVD--VKPA------------NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH--SKLFEEQE  329 (408)
Q Consensus       268 ~~--~~~--~~~~------------~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~  329 (408)
                      ..  +..  ..+.            .++ -...+.+++..|...+++ .|+ ++++.||.+.........  +-.|+.+ 
T Consensus       105 v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~-  180 (215)
T PF14761_consen  105 VRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQTIQSEKFSFLDFERS-  180 (215)
T ss_pred             EEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEEEecccccEEechhh-
Confidence            11  111  0000            011 134556777777653544 443 678999988755321110  0111111 


Q ss_pred             CCCCcccccccc-ceeEEEEEccCCCEEEEeCCCeEEEEECC
Q 015363          330 APGTRSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDIN  370 (408)
Q Consensus       330 ~~~~~~~~~~h~-~~i~~~~~spdg~~l~s~~d~~v~~wd~~  370 (408)
                            .+.-|. ..+..+++.  +.|+|..++..++++.+.
T Consensus       181 ------l~~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl~  214 (215)
T PF14761_consen  181 ------LIDHIDNFKPTQVAIC--EGYIAVMSDLEVLVLKLE  214 (215)
T ss_pred             ------hhheecCceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence                  111111 235566664  679998888888888763

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=88.68  E-value=15  Score=31.81  Aligned_cols=117  Identities=12%  Similarity=0.199  Sum_probs=61.9

Q ss_pred             cccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 015363          232 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  311 (408)
Q Consensus       232 ~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  311 (408)
                      -..+|..+.|.|++.+.+.+..|.|++=+.......... .+.  .+....-.+..++|.+++ .+.|+|+ .|.+ +..
T Consensus       185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~-~~~--~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S  258 (302)
T PF14870_consen  185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE-PII--PIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVS  258 (302)
T ss_dssp             SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE----B---TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEE
T ss_pred             ccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc-ccC--CcccCceeeEEEEecCCC-CEEEEeC-CccE-EEe
Confidence            346799999999998888778888888772212222111 000  111223447899999998 7777665 4443 344


Q ss_pred             cCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEE
Q 015363          312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW  367 (408)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~w  367 (408)
                      ...++.       ++....      .....+.+..+.|.++.+-++.|.+|.|.=|
T Consensus       259 ~DgGkt-------W~~~~~------~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  259 TDGGKT-------WQKDRV------GENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             SSTTSS--------EE-GG------GTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             CCCCcc-------ceECcc------ccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            555532       111100      0000245788999888888899999887655

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=88.57  E-value=0.74  Score=44.70  Aligned_cols=97  Identities=13%  Similarity=0.271  Sum_probs=59.5

Q ss_pred             cCcccceeeecccCcCcccce----eeccceEEEEECC---CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccc
Q 015363           12 AQPLEWKFSQVFGERTAGEEV----QEVDIISAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSM   84 (408)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~~~~----~h~~~V~~~~~s~---~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   84 (408)
                      +..+.|+....-|+-...-++    .-...+.-+.|.|   +.-++..+-.++.|++..+++...               
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~---------------  217 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR---------------  217 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH---------------
Confidence            456778888754543322111    1223345556665   567888888999999888765431               


Q ss_pred             cCCCccceeeeeccCCcccccccccccccceeEEEEe---------ecCCCcEEEEEeCCCeEEEEEcC
Q 015363           85 SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC---------QSANSALYLLSTNDKTIKLWKVQ  144 (408)
Q Consensus        85 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~---------p~~~~~~l~~~~~d~~i~vwd~~  144 (408)
                               ..+.+|.            ..+..++|.         -++||+.|+.+..||.++.|.+.
T Consensus       218 ---------~l~rsHs------------~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  218 ---------SLFRSHS------------QRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             ---------HHHHhcC------------CCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence                     2345565            333333321         14568899999999999888764

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.34  E-value=8.4  Score=28.44  Aligned_cols=105  Identities=10%  Similarity=0.116  Sum_probs=63.5

Q ss_pred             EeCCCCCEEEEe-cCCeEEEEeCCCCCc-------eeeEeecCCCcccCCcCCeEEEEEcC---C-CCceEEEEeCCCeE
Q 015363          240 SNNSDGETFISA-DDLRINLWNLEISNQ-------SFNIVDVKPANMEDLTEVITSAEFHP---T-HCNMLAYSSSKGSI  307 (408)
Q Consensus       240 ~~~~~~~~l~~~-~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~p---~-~~~~l~s~~~dg~i  307 (408)
                      .|......|+++ .-++|.|++......       .+..+        .-...|++++-.|   + +...|+.|+ ...|
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--------Nin~~italaaG~l~~~~~~D~LliGt-~t~l   75 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--------NINQEITALAAGRLKPDDGRDCLLIGT-QTSL   75 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE--------ECCCceEEEEEEecCCCCCcCEEEEec-cceE
Confidence            455566677777 788888888663321       12222        1245567765443   2 235677665 5678


Q ss_pred             EEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc----CCCEEEEeCCCeEEEEECC
Q 015363          308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR----NGRHILSRDYMTLKLWDIN  370 (408)
Q Consensus       308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp----dg~~l~s~~d~~v~~wd~~  370 (408)
                      ..||+.....+    ..-+             -...|+++.+-.    +..+++.|+...|.-||..
T Consensus        76 laYDV~~N~d~----Fyke-------------~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~  125 (136)
T PF14781_consen   76 LAYDVENNSDL----FYKE-------------VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE  125 (136)
T ss_pred             EEEEcccCchh----hhhh-------------CccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence            99999887532    1111             124677776632    4567777878888888875

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.64  E-value=17  Score=31.18  Aligned_cols=249  Identities=8%  Similarity=0.044  Sum_probs=115.2

Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-----cEEEEeccCCCC---cccCCCCCeEeecCCceeeEEccCCCee
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEK-----KVKKVFDWNVHP---EKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                      -..|+++|.  +.+-++...-+...+||....     ....+......+   ....+.           .+.|+......
T Consensus        25 ~WGia~~p~--~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PT-----------GiVfN~~~~F~   91 (336)
T TIGR03118        25 AWGLSYRPG--GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPT-----------GQVFNGSDTFV   91 (336)
T ss_pred             cceeEecCC--CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCcc-----------EEEEeCCCceE
Confidence            457889765  667777777888999998711     111112211111   111122           23333322221


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccce-EEEEeC--CCCCEEEEe--cCCeEEEEeC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI-NSISNN--SDGETFISA--DDLRINLWNL  261 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~i~~~--~~~~~l~~~--~d~~i~iwd~  261 (408)
                      ..-.+.+....++-++++|+|.-|. -.-........ ...+.......| ..+++.  ..+.+|..+  ..++|.+||-
T Consensus        92 vt~~g~~~~a~Fif~tEdGTisaW~-p~v~~t~~~~~-~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~  169 (336)
T TIGR03118        92 VSGEGITGPSRFLFVTEDGTLSGWA-PALGTTRMTRA-EIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG  169 (336)
T ss_pred             EcCCCcccceeEEEEeCCceEEeec-CcCCccccccc-EEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence            1111111112235678999999887 21111100000 011101111222 344544  346777776  7999999987


Q ss_pred             CCCCceeeEeecCCCcccCCcCC-----------eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC
Q 015363          262 EISNQSFNIVDVKPANMEDLTEV-----------ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  330 (408)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~-----------v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  330 (408)
                      . -.+...--.+....+...-.+           |+-..-.++. +.=+.|..-|.|-+||+... .+    +.+...  
T Consensus       170 ~-f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~-l~----~r~as~--  240 (336)
T TIGR03118       170 S-FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQ-LL----RRVASS--  240 (336)
T ss_pred             c-cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCc-EE----EEeccC--
Confidence            6 222110000000011111111           1111112222 22233344578999998643 33    222111  


Q ss_pred             CCCccccccccceeEEEEEcc------CCCEEEEe-CCCeEEEEECCCCCCceeeeeeccc---ccceEEecCCCe
Q 015363          331 PGTRSFFTEIIASISDIKFAR------NGRHILSR-DYMTLKLWDINMDSGPVATFQVHEH---LRPKVMHSSKNY  396 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~sp------dg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  396 (408)
                              +.-...+.|+..|      .|.+|+.- .||+|..||..+ ++.+-.+....+   ...-|+.+..+.
T Consensus       241 --------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s-G~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       241 --------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS-GAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             --------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCC-CceeeeecCCCCCeEEecCeEEeeeCC
Confidence                    1123456777765      46666655 689999999987 565555544333   355555554444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=86.49  E-value=24  Score=31.74  Aligned_cols=111  Identities=9%  Similarity=0.091  Sum_probs=54.6

Q ss_pred             cceEEEEeCCCCCEEEEe-c-----------C-CeEEEEeCCCC-Cce--eeEeecCCCcccCCcCCeEEEEEcCCCCce
Q 015363          234 YHINSISNNSDGETFISA-D-----------D-LRINLWNLEIS-NQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNM  297 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~-----------d-~~i~iwd~~~~-~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  297 (408)
                      .....|+|.++|+++++. .           . ..|.+++-... ++.  ..+       +.......+.+++.+++  +
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v-------fa~~l~~p~Gi~~~~~G--l   84 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV-------FAEELSMVTGLAVAVGG--V   84 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE-------eecCCCCccceeEecCC--E
Confidence            346688999999988874 1           1 26766654322 221  122       22223345789998887  4


Q ss_pred             EEEEeCCCeEEEEEcCCCceeccccccc-ccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363          298 LAYSSSKGSIRLIDMRQSALCDTHSKLF-EEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  359 (408)
Q Consensus       298 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~  359 (408)
                      +++ +.....++.|.......+.....+ .+-...     -..+......++|.|||.+.++-
T Consensus        85 yV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-----~~~~~~~~~~l~~gpDG~LYv~~  141 (367)
T TIGR02604        85 YVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQ-----INNHHHSLNSLAWGPDGWLYFNH  141 (367)
T ss_pred             EEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCC-----CCcccccccCceECCCCCEEEec
Confidence            443 334333344543221111000111 111000     00012347789999999876653

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.39  E-value=30  Score=34.75  Aligned_cols=140  Identities=12%  Similarity=0.106  Sum_probs=76.7

Q ss_pred             cccceEEEEeC---C----CCCEEEEecCCeEEEEeCCCCCc------eeeEeecCC-Cccc---CCcCCeEEEEEcCCC
Q 015363          232 HDYHINSISNN---S----DGETFISADDLRINLWNLEISNQ------SFNIVDVKP-ANME---DLTEVITSAEFHPTH  294 (408)
Q Consensus       232 ~~~~v~~i~~~---~----~~~~l~~~~d~~i~iwd~~~~~~------~~~~~~~~~-~~~~---~~~~~v~~~~~~p~~  294 (408)
                      ...+|..|+|.   .    ..++|++-....+.|+...-...      ....++..+ .++.   ....+...++|+|..
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            34667777777   2    22455555667777777221111      000000000 0011   123445789999987


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCC
Q 015363          295 CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD  372 (408)
Q Consensus       295 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~  372 (408)
                      ...||.....|...||++............+..........=..++ +.-..+.|.++-..|+.++...+.++|+++.
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~-s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~  234 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEEL-SNWKRILWVSDSNRLLVCNRSKLMLIDFESN  234 (765)
T ss_pred             cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCccc-CcceeeEecCCCCEEEEEcCCceEEEECCCC
Confidence            7899999999999999993221110000111111000000000111 3445789999988999998889999999873

These proteins are found in fungi.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=85.59  E-value=25  Score=31.04  Aligned_cols=164  Identities=11%  Similarity=0.148  Sum_probs=81.9

Q ss_pred             cceEEEEeCC-CCCEEEEecCCe------EEEEeCCCCC---ceeeE---eecCCC---cccCCcCCeEEEEEcCCCCce
Q 015363          234 YHINSISNNS-DGETFISADDLR------INLWNLEISN---QSFNI---VDVKPA---NMEDLTEVITSAEFHPTHCNM  297 (408)
Q Consensus       234 ~~v~~i~~~~-~~~~l~~~~d~~------i~iwd~~~~~---~~~~~---~~~~~~---~~~~~~~~v~~~~~~p~~~~~  297 (408)
                      +.+..+.+.+ ++.+++.++++.      +..+++....   .....   ..++..   .+.......-+|++.+++ .+
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF   98 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence            5678888985 455555556666      6555555311   11111   111100   011011133478887777 77


Q ss_pred             EEEEeCC------CeEEEEEcCCCceecccccccccccCC--CCc-cccccccceeEEEEEccCCCEEEEe------CCC
Q 015363          298 LAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAP--GTR-SFFTEIIASISDIKFARNGRHILSR------DYM  362 (408)
Q Consensus       298 l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~h~~~i~~~~~spdg~~l~s~------~d~  362 (408)
                      +++.-.+      ..|..++.. +...    ..+.-+...  ... ..-........+|+++|||+.|+++      .|+
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~  173 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG  173 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence            7777667      788888876 5432    122111000  000 0011123578999999999965543      232


Q ss_pred             --e-------EEEEECC--CCCCceeeeeeccc---------ccceEEecCCCeeeeeece
Q 015363          363 --T-------LKLWDIN--MDSGPVATFQVHEH---------LRPKVMHSSKNYFMGLDNI  403 (408)
Q Consensus       363 --~-------v~~wd~~--~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~d~~  403 (408)
                        .       ++++..+  +.+.+.+.+...-.         ....+..+-++.++.+.|.
T Consensus       174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~  234 (326)
T PF13449_consen  174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD  234 (326)
T ss_pred             cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence              2       5555554  32333444333221         2344555666667776665

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=85.49  E-value=19  Score=31.80  Aligned_cols=125  Identities=18%  Similarity=0.239  Sum_probs=67.5

Q ss_pred             eEEEEeCCCCCEEEEe-cC------CeEEEEeCCCCCceeeEeecCCC--------cccCCcCCeEEEEEcCCCCceEEE
Q 015363          236 INSISNNSDGETFISA-DD------LRINLWNLEISNQSFNIVDVKPA--------NMEDLTEVITSAEFHPTHCNMLAY  300 (408)
Q Consensus       236 v~~i~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~s  300 (408)
                      .-+|++.+++.++++. .+      ..|..++.. + .....+.+...        .-...+..+-+|+++|+| +.|.+
T Consensus        87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~  163 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-G-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFA  163 (326)
T ss_pred             hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-C-cccceEccccccccccCccccccCCCCeEEEEECCCC-CEEEE
Confidence            4466777888888887 67      788888876 3 33333322110        112235668899999999 65555


Q ss_pred             EeC-----CC--e-------EEEE--EcCC-CceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-C--
Q 015363          301 SSS-----KG--S-------IRLI--DMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D--  360 (408)
Q Consensus       301 ~~~-----dg--~-------i~iw--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~--  360 (408)
                      +..     |+  .       ++|+  |..+ +.......+.+.....       ......|..+.+-+++++|+-- +  
T Consensus       164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~-------~~~~~~isd~~al~d~~lLvLER~~~  236 (326)
T PF13449_consen  164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT-------APGDNGISDIAALPDGRLLVLERDFS  236 (326)
T ss_pred             EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCcccc-------ccCCCCceeEEEECCCcEEEEEccCC
Confidence            433     22  1       4454  4443 1111111111111000       0013578999999999988853 1  


Q ss_pred             ---CCeEEEEECC
Q 015363          361 ---YMTLKLWDIN  370 (408)
Q Consensus       361 ---d~~v~~wd~~  370 (408)
                         ...++|+.+.
T Consensus       237 ~~~~~~~ri~~v~  249 (326)
T PF13449_consen  237 PGTGNYKRIYRVD  249 (326)
T ss_pred             CCccceEEEEEEE
Confidence               2455555544

>PHA02713 hypothetical protein; Provisional

Probab=84.48  E-value=30  Score=33.20  Aligned_cols=26  Identities=4%  Similarity=0.125  Sum_probs=17.0

Q ss_pred             CcEEEEEeCC------CeEEEEEcCCCcEEEE
Q 015363          126 SALYLLSTND------KTIKLWKVQEKKVKKV  151 (408)
Q Consensus       126 ~~~l~~~~~d------~~i~vwd~~~~~~~~~  151 (408)
                      +..++.|+.+      ..+..||..++.....
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~  335 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVEL  335 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeC
Confidence            5677777753      3477788887765443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.43  E-value=0.21  Score=44.82  Aligned_cols=140  Identities=9%  Similarity=0.092  Sum_probs=87.1

Q ss_pred             EEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCc
Q 015363          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND  196 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (408)
                      ...|-|  ++.-++.++.+..+..||-........ ..         .+..       ..++|..++..+          
T Consensus        39 ~~~w~~--e~~nlavaca~tiv~~YD~agq~~le~-n~---------tg~a-------ldm~wDkegdvl----------   89 (615)
T KOG2247|consen   39 IHRWRP--EGHNLAVACANTIVIYYDKAGQVILEL-NP---------TGKA-------LDMAWDKEGDVL----------   89 (615)
T ss_pred             eeeEec--CCCceehhhhhhHHHhhhhhcceeccc-CC---------chhH-------hhhhhccccchh----------
Confidence            445644  455688888888999888654432221 11         1111       146666666654          


Q ss_pred             cccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCC
Q 015363          197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP  275 (408)
Q Consensus       197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  275 (408)
                       ++.+...+.+.+|+ +.........     +-..|....  +.|++....++.+ ..+.+.+++..+.+....      
T Consensus        90 -avlAek~~piylwd-~n~eytqqLE-----~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv------  154 (615)
T KOG2247|consen   90 -AVLAEKTGPIYLWD-VNSEYTQQLE-----SGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV------  154 (615)
T ss_pred             -hhhhhcCCCeeech-hhhhhHHHHh-----ccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhh------
Confidence             46677889999999 5442221110     001122222  6799999999999 899999999987665543      


Q ss_pred             CcccCCcCCeEEEEEcCCCCceEEEEeCC
Q 015363          276 ANMEDLTEVITSAEFHPTHCNMLAYSSSK  304 (408)
Q Consensus       276 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  304 (408)
                        ...|...++++++.+.+ + .+.++.|
T Consensus       155 --~Gkh~RRgtq~av~lEd-~-vil~dcd  179 (615)
T KOG2247|consen  155 --MGKHQRRGTQIAVTLED-Y-VILCDCD  179 (615)
T ss_pred             --hcccccceeEEEecccc-e-eeecCcH
Confidence              23388889999999987 4 4444433

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=84.39  E-value=34  Score=31.64  Aligned_cols=33  Identities=9%  Similarity=0.117  Sum_probs=25.2

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCC
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDT   67 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~   67 (408)
                      -+.-+.|+|.|||++|++--..|.|++++-.+.
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~   61 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG   61 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence            455789999999987776654699999975543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.98  E-value=5.2  Score=22.25  Aligned_cols=31  Identities=19%  Similarity=0.264  Sum_probs=23.4

Q ss_pred             cCCCEEEEeC--CCeEEEEECCCCCCceeeeeec
Q 015363          351 RNGRHILSRD--YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       351 pdg~~l~s~~--d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      |++++|+++.  +++|.++|..+ ++.+..+...
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECC
Confidence            6788777763  48999999987 6777777653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.97  E-value=4.6  Score=22.16  Aligned_cols=30  Identities=17%  Similarity=0.123  Sum_probs=17.9

Q ss_pred             CcCCeEEEEEcCCCCceEEEEeCC--CeEEEE
Q 015363          281 LTEVITSAEFHPTHCNMLAYSSSK--GSIRLI  310 (408)
Q Consensus       281 ~~~~v~~~~~~p~~~~~l~s~~~d--g~i~iw  310 (408)
                      ....-....|+|||..++.+...+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344567899999994444444445  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=83.36  E-value=7.7  Score=37.12  Aligned_cols=75  Identities=8%  Similarity=0.083  Sum_probs=40.7

Q ss_pred             CCCCEEEEe-cCCeEEEEeCCC---CCceeeEeecCCC-------cc--------cCCcCCeEEEEEcC----CCCceEE
Q 015363          243 SDGETFISA-DDLRINLWNLEI---SNQSFNIVDVKPA-------NM--------EDLTEVITSAEFHP----THCNMLA  299 (408)
Q Consensus       243 ~~~~~l~~~-~d~~i~iwd~~~---~~~~~~~~~~~~~-------~~--------~~~~~~v~~~~~~p----~~~~~l~  299 (408)
                      ++...++.+ .||.+.......   .+...........       .+        ......+..+++++    +. .+++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  234 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD-TFLF  234 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-TEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-CEEE
Confidence            456667777 888888777664   2222222111110       00        01123455666666    44 7899


Q ss_pred             EEeCCCeEEEEEcCCCcee
Q 015363          300 YSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       300 s~~~dg~i~iwd~~~~~~~  318 (408)
                      +.+.|+++|+||+.++..+
T Consensus       235 tl~~D~~LRiW~l~t~~~~  253 (547)
T PF11715_consen  235 TLSRDHTLRIWSLETGQCL  253 (547)
T ss_dssp             EEETTSEEEEEETTTTCEE
T ss_pred             EEeCCCeEEEEECCCCeEE
Confidence            9999999999999999763

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PHA02790 Kelch-like protein; Provisional

Probab=82.91  E-value=42  Score=31.55  Aligned_cols=26  Identities=12%  Similarity=0.298  Sum_probs=17.2

Q ss_pred             CcEEEEEeCC--CeEEEEEcCCCcEEEE
Q 015363          126 SALYLLSTND--KTIKLWKVQEKKVKKV  151 (408)
Q Consensus       126 ~~~l~~~~~d--~~i~vwd~~~~~~~~~  151 (408)
                      +...+.|+.+  .++..||..+++....
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~~  346 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVNM  346 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEEC
Confidence            6677777754  3577788777665544

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=82.26  E-value=37  Score=30.47  Aligned_cols=113  Identities=11%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             ccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc-eeeEee-cC
Q 015363          198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-SFNIVD-VK  274 (408)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~-~~  274 (408)
                      ++....+|.+..|.+....+.....+.++.+..  ...+..+........|..+ ++.-|.-|+.+.... ....+. ..
T Consensus       174 a~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~  251 (381)
T PF02333_consen  174 AFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD  251 (381)
T ss_dssp             EEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS
T ss_pred             EEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccc
Confidence            477788899999983333444455566666522  3468888888888889989 888888888763221 112221 11


Q ss_pred             CCcccCCcCCeEEEEEc--CCCC-ceEEEEeCCCeEEEEEcCCC
Q 015363          275 PANMEDLTEVITSAEFH--PTHC-NMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       275 ~~~~~~~~~~v~~~~~~--p~~~-~~l~s~~~dg~i~iwd~~~~  315 (408)
                         -......|-.|+.-  +++. .+|++.-.+++..+|+.+..
T Consensus       252 ---g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  252 ---GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             ---SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             ---ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence               11223456666653  3432 45555555889999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=81.81  E-value=62  Score=32.73  Aligned_cols=113  Identities=12%  Similarity=0.102  Sum_probs=61.0

Q ss_pred             EeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC--CCc---eEEEEeCCCeEEEEEcC
Q 015363          240 SNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCN---MLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       240 ~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~---~l~s~~~dg~i~iwd~~  313 (408)
                      +.+.+...++.+ .++.+...++...+ .....      ...-...|.|+.++|-  +++   +++.|..+..+.+.-..
T Consensus       494 ~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~------~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~  566 (1096)
T KOG1897|consen  494 VVSANASQVVVAGGGLALFYLEIEDGG-LREVS------HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL  566 (1096)
T ss_pred             EEeecceEEEEecCccEEEEEEeeccc-eeeee------eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence            333344444444 66777777776333 22211      1223456889999976  333   88888876655544322


Q ss_pred             -CCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCC
Q 015363          314 -QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINM  371 (408)
Q Consensus       314 -~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~  371 (408)
                       .....  ....+.+..-          ...|.-..|-.|..+|.++ .||.+..|.++.
T Consensus       567 pd~~~~--~~~~l~~~~i----------PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~  614 (1096)
T KOG1897|consen  567 PDLILI--THEQLSGEII----------PRSILLTTFEGDIHYLLVALGDGALLYFVLDI  614 (1096)
T ss_pred             CCccee--eeeccCCCcc----------chheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence             22111  0011111111          1345556666678888888 589988876654

>PHA03098 kelch-like protein; Provisional

Probab=81.58  E-value=50  Score=31.52  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=17.6

Q ss_pred             CcEEEEEeCC-----CeEEEEEcCCCcEEEE
Q 015363          126 SALYLLSTND-----KTIKLWKVQEKKVKKV  151 (408)
Q Consensus       126 ~~~l~~~~~d-----~~i~vwd~~~~~~~~~  151 (408)
                      +..++.|+.+     ..+..||..+++....
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            5677788765     3467788877766543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=81.51  E-value=5.6  Score=22.10  Aligned_cols=27  Identities=15%  Similarity=0.327  Sum_probs=19.1

Q ss_pred             CCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          292 PTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       292 p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      |++..++++...+++|.++|..+++.+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~   27 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVI   27 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence            566345555556899999999877554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=81.44  E-value=48  Score=31.24  Aligned_cols=29  Identities=17%  Similarity=0.069  Sum_probs=24.5

Q ss_pred             cEEEEEeCCCeEEEEEcCCCcEEEEeccC
Q 015363          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWN  155 (408)
Q Consensus       127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  155 (408)
                      ..++.++.++.|.-+|.++++.+......
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            47888889999999999999988776654

The alignment model contains an 8-bladed beta-propeller.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=81.04  E-value=13  Score=35.61  Aligned_cols=41  Identities=10%  Similarity=0.296  Sum_probs=29.1

Q ss_pred             eeEEEEee--cCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccC
Q 015363          115 INKIRWCQ--SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN  155 (408)
Q Consensus       115 v~~v~~~p--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  155 (408)
                      +..++..+  -.+..++++.+.|+++|+||+.++++.......
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence            44455543  113468999999999999999999997766554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.57  E-value=60  Score=31.75  Aligned_cols=34  Identities=18%  Similarity=0.356  Sum_probs=28.0

Q ss_pred             cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363          282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA  316 (408)
Q Consensus       282 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  316 (408)
                      ...+..+..||+. ++|+--..+|.|.+-++...+
T Consensus       216 ~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  216 NSSVVKISVSPNR-RFLALYTETGKIWVVSIDLSQ  249 (829)
T ss_pred             CceEEEEEEcCCc-ceEEEEecCCcEEEEecchhh
Confidence            4557789999999 899988899999998877653

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=80.54  E-value=6.1  Score=35.60  Aligned_cols=31  Identities=23%  Similarity=0.244  Sum_probs=25.9

Q ss_pred             ceEEEEeCCCCCEEEEecCCeEEEEeCCCCC
Q 015363          235 HINSISNNSDGETFISADDLRINLWNLEISN  265 (408)
Q Consensus       235 ~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~  265 (408)
                      .+.-++++|.+.++++-+.|.++++.+++..
T Consensus       359 ~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~  389 (733)
T COG4590         359 APQLVAMSPNQAYLLSEDQGKIRLAQLENRN  389 (733)
T ss_pred             CcceeeeCcccchheeecCCceEEEEecCCC
Confidence            4567899999999998888999999888543

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.09  E-value=11  Score=34.68  Aligned_cols=90  Identities=18%  Similarity=0.241  Sum_probs=53.2

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeC---------CCCCCCCcccccccccccccCCCccceeeeeccCCccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERT---------DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY  105 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~---------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  105 (408)
                      .=.|..+..++.|..+|-.+.+|.+.++=..         +++.+..|+..          .-.-++.+.- .|      
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~----------~i~~~~ftss-~~------  165 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTT----------PVAERFFTSS-TS------  165 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEee----------cccceeeccC-Cc------
Confidence            3457888999999999999999877664311         11110001100          0000011100 11      


Q ss_pred             ccccccccceeEEEEeecC--CCcEEEEEeCCCeEEEEEcCCCcEE
Q 015363          106 LKSLEIEEKINKIRWCQSA--NSALYLLSTNDKTIKLWKVQEKKVK  149 (408)
Q Consensus       106 ~~~~~~~~~v~~v~~~p~~--~~~~l~~~~~d~~i~vwd~~~~~~~  149 (408)
                             -.+..++|+|+.  | ..+..-+.|++||+|++......
T Consensus       166 -------ltl~Qa~WHP~S~~D-~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  166 -------LTLKQAAWHPSSILD-PHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             -------eeeeeccccCCccCC-ceEEEEecCcEEEEEecCCcchh
Confidence                   237778999876  4 46777789999999999865433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	408
3dw8_B	447	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		1e-100

>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447

Iteration: 1
 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/387 (50%), Positives = 253/387 (65%), Gaps = 59/387 (15%)
Query: 4   GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63
           GGG+       ++W FSQV G     ++V E DIIS +EF+ SG+ LATGD+GGRVV+F+
Sbjct: 5   GGGND------IQWCFSQVKG--AVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQ 56
Query: 64  RTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123
                    Q ++ ++  +S     E+   + FQSHEPEFDYLKSLEIEEKINKIRW   
Sbjct: 57  ---------QEQENKIQSHSRG---EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104
Query: 124 ANSALYLLSTNDKTIXXXXXXXXXXXXXFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183
            N+A +LLSTNDKTI               W +        G                  
Sbjct: 105 KNAAQFLLSTNDKTIKL-------------WKISERDKRPEG------------------ 133
Query: 184 GCGERNFGCASNDSSF-PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN 242
                 +     D  +  P  V++LR+PV     +  + A  RRI+A+AH YHINSIS N
Sbjct: 134 ------YNLKEEDGRYRDPTTVTTLRVPVF-RPMDLMVEASPRRIFANAHTYHINSISIN 186
Query: 243 SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302
           SD ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN   YSS
Sbjct: 187 SDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS 246
Query: 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM 362
           SKG+IRL DMR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+
Sbjct: 247 SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYL 306
Query: 363 TLKLWDINMDSGPVATFQVHEHLRPKV 389
           ++K+WD+NM++ PV T+QVHE+LR K+
Sbjct: 307 SVKVWDLNMENRPVETYQVHEYLRSKL 333

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	408
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	1e-112
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	2e-10
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	5e-05
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	3e-10
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-08
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	2e-08
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	1e-05
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	3e-08
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	8e-07
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-06
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	5e-06
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	9e-06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-05
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	1e-05
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	2e-05
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	7e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-04
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	5e-05
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	5e-05
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-04
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	8e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	9e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-04
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	7e-04
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-04
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	7e-04
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	2e-04
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	3e-04
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	5e-04
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	5e-04
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	6e-04
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	6e-04
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	7e-04

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score =  334 bits (856), Expect = e-112
 Identities = 195/392 (49%), Positives = 255/392 (65%), Gaps = 51/392 (13%)

Query: 7   SSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD 66
           +       ++W FSQV G     ++V E DIIS +EF+ SG+ LATGD+GGRVV+F++  
Sbjct: 2   AGAGGGNDIQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQ 59

Query: 67  TRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126
                                 E+   + FQSHEPEFDYLKSLEIEEKINKIRW    N+
Sbjct: 60  ENKIQS------------HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107

Query: 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186
           A +LLSTNDKTIKLWK+ E+  K+   +N+  E                           
Sbjct: 108 AQFLLSTNDKTIKLWKISERD-KRPEGYNLKEE--------------------------- 139

Query: 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246
                   +     P  V++LR+PV     +  + A  RRI+A+AH YHINSIS NSD E
Sbjct: 140 --------DGRYRDPTTVTTLRVPVF-RPMDLMVEASPRRIFANAHTYHINSISINSDYE 190

Query: 247 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306
           T++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN   YSSSKG+
Sbjct: 191 TYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT 250

Query: 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL 366
           IRL DMR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+++K+
Sbjct: 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKV 310

Query: 367 WDINMDSGPVATFQVHEHLRPKVMHSSKNYFM 398
           WD+NM++ PV T+QVHE+LR K+    +N  +
Sbjct: 311 WDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 17/186 (9%), Positives = 50/186 (26%), Gaps = 31/186 (16%)

Query: 213 VTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271
           +       V      Y  +    +  I+   + + F  +  D +I +  +    Q   + 
Sbjct: 93  LKEIIVGEVYSSSLTYDCSS--TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK 150

Query: 272 DVKPANMEDLT--------EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323
            +    +  +           +    F     ++L   ++   + + D+R          
Sbjct: 151 FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN 210

Query: 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL--SRDYMTLKLWDINMDSG-PVATFQ 380
                              ++S I        ++  +     + +WDI       + ++ 
Sbjct: 211 SPRH--------------GAVSSICIDEECCVLILGTTRG-IIDIWDIR--FNVLIRSWS 253

Query: 381 VHEHLR 386
             +H  
Sbjct: 254 FGDHAP 259

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 35/258 (13%), Positives = 87/258 (33%), Gaps = 44/258 (17%)

Query: 134 NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193
           +   IK+W ++E  V +V+  ++  +          S V+ I  + + N       F  +
Sbjct: 84  DQGVIKIWNLKEIIVGEVYSSSLTYD--------CSSTVTQI--TMIPNFDA----FAVS 129

Query: 194 SNDSS---FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250
           S D          V+  +    V       +          ++Y +   +  ++ ++ + 
Sbjct: 130 SKDGQIIVL---KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186

Query: 251 A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308
           A  +  R+ ++++    +   I +            ++S       C +L   +++G I 
Sbjct: 187 ALTNLSRVIIFDIRTLERLQIIENSPRHG------AVSSICIDE-ECCVLILGTTRGIID 239

Query: 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLW 367
           + D+R + L  + S         G  +  T +        + +N   ++       L +W
Sbjct: 240 IWDIRFNVLIRSWS--------FGDHAPITHVEVCQF---YGKNSVIVVGGSSKTFLTIW 288

Query: 368 DINMDSG-PVATFQVHEH 384
           +     G     F   + 
Sbjct: 289 NF--VKGHCQYAFINSDE 304

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 26/163 (15%)

Query: 230 HAHDYHINSISNNSDGETFI--SADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS 287
             H      +S N +   ++  ++DD  I LW++  + +   ++D K       T V+  
Sbjct: 178 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH-TAVVED 236

Query: 288 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347
             +H  H ++    +    + + D R                   T      + A  +++
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTR----------------NNNTSKPSHTVDAHTAEV 280

Query: 348 ---KFARNGRHIL---SRDYMTLKLWDINMDSGPVATFQVHEH 384
               F      IL   S D  T+ LWD+      + +F+ H+ 
Sbjct: 281 NCLSFNPYSEFILATGSADK-TVALWDLRNLKLKLHSFESHKD 322

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 36/172 (20%)

Query: 230 HAHDYHINSISNNSDGETFI--SADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS 287
            AH   +N +S N   E  +   + D  + LW+L               + E   + I  
Sbjct: 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL-------HSFESHKDEIFQ 326

Query: 288 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII------ 341
            ++ P +  +LA S +   + + D+         SK+ EEQ          E++      
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDL---------SKIGEEQSTEDAEDGPPELLFIHGGH 377

Query: 342 -ASISDIKFARNGRHIL---SRDYMTLKLWDINM-------DSGPVATFQVH 382
            A ISD  +  N   I+   S D   +++W +            P +  + +
Sbjct: 378 TAKISDFSWNPNEPWIICSVSED-NIMQVWQMAENVYNDEEPEIPASELETN 428

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 17/162 (10%)

Query: 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS 287
           +   D   N +  + + +    A D+  + L++   +N + N +    A   + +  + +
Sbjct: 63  SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSM----ARFSNHSSSVKT 118

Query: 288 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347
            +F+    N+LA   + G I + DM +     ++       ++  +          +  +
Sbjct: 119 VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD-------EVISL 171

Query: 348 KFARNGRHIL---SRDYMTLKLWDINMDSGPVATFQVHEHLR 386
            + ++  H+            +WD+      V          
Sbjct: 172 AWNQSLAHVFASAGSS-NFASIWDLK-AKKEVIHLSYTSPNS 211

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 19/157 (12%), Positives = 53/157 (33%), Gaps = 20/157 (12%)

Query: 232 HDYHINSIS-NNSDGETFISA-DDLRINLWNLE-ISNQSFNIVDVKPANMEDLTEVITSA 288
           H   + ++  N        S  ++  I +W++   +    N   + P       + + S 
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171

Query: 289 EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348
            ++ +  ++ A + S     + D++          L       G +         +S ++
Sbjct: 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIH---LSYTSPNSGIKQ-------QLSVVE 221

Query: 349 FARNGRHILS------RDYMTLKLWDINMDSGPVATF 379
           +       ++       D  ++ +WD+   + P+ T 
Sbjct: 222 WHPKNSTRVATATGSDNDP-SILIWDLRNANTPLQTL 257

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 54.0 bits (129), Expect = 3e-08
 Identities = 50/300 (16%), Positives = 95/300 (31%), Gaps = 68/300 (22%)

Query: 101 PEFDYLKSLEIEEKINKIRWCQ-----------SANSALYLLSTNDKTIKLWKVQEKKVK 149
           P++  LK+LE+ +  N  R  +             +  + +    D  +   ++++ K  
Sbjct: 12  PKWPILKNLELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTI 71

Query: 150 KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRL 209
                   P    G     G H + I      + G   R       +             
Sbjct: 72  TTIT---TPNPRTG-----GEHPAII------SRGPCNRLLLLYPGNQ------------ 105

Query: 210 PVVVTSQETNLVAGCRRIYAHAHDYHINSI--SNNSDGETFISA-DDLRINLWNLEISNQ 266
            + +   +TN      R         I  +   N  + E FI A +   I   + E  + 
Sbjct: 106 -ITILDSKTN---KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE-DDS 160

Query: 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326
            + +   K           +S   H     +LA  S  G + + ++       +   + E
Sbjct: 161 QYIVHSAKSD------VEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQASSRFPVDE 213

Query: 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA--TFQVHEH 384
           E              A I ++KFA NG  ++     T+  +D+  D G +A  T+ + E 
Sbjct: 214 E--------------AKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEF 259

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 28/271 (10%), Positives = 67/271 (24%), Gaps = 50/271 (18%)

Query: 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165
           + +                     LL      I +   +  KV +  + +   E      
Sbjct: 74  ITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIY--- 130

Query: 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCR 225
                H     +            F  A N  +        +                  
Sbjct: 131 --MYGHNEVNTEY-----------FIWADNRGT--------IGFQSYEDDS-------QY 162

Query: 226 RIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284
            +++   D   +S   + D         D  ++++NL   +Q+ +   V      D    
Sbjct: 163 IVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV------DEEAK 216

Query: 285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT----EI 340
           I   +F       +       ++   D+R+      +      +   GT ++      + 
Sbjct: 217 IKEVKFADN-GYWMV-VECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274

Query: 341 IASISDIKFARNGRHILSRDYM-TLKLWDIN 370
           + + S+         +    +    K W  +
Sbjct: 275 MIAYSN-----ESNSLTIYKFDKKTKNWTKD 300

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 46/269 (17%), Positives = 80/269 (29%), Gaps = 78/269 (28%)

Query: 80  MDYSMSRHPEFRYKTEFQSHEPEF----------DYLKSLEIEEKINKIRWCQSANSALY 129
           MD+    H +++YK      E  F          D  KS+  +E+I+ I   + A S   
Sbjct: 7   MDFETGEH-QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 130 LLSTNDKTIKLWKVQEKKVKKV-----------FDWNVHPEKAAGNGPIFGSHVSAIPKS 178
            L         W +  K+ + V           + + + P K     P      S + + 
Sbjct: 66  RL--------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP------SMMTRM 111

Query: 179 YMANGGCGERNFGCASNDSSFPPGGVS------SLRLPVVVTSQETNLV----AGC-RRI 227
           Y+      +R+     N   F    VS       LR  ++      N++     G  +  
Sbjct: 112 YIE-----QRDRLYNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 228 YAH--AHDYHINSISNNSDGETF-------ISADDLRINLWNL---------EISNQSFN 269
            A      Y    +    D + F        S + +   L  L           S+ S N
Sbjct: 166 VALDVCLSY---KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 270 IVDVKPANMEDLTEVITSAEFHPTHCNML 298
           I       +  +   +        + N L
Sbjct: 223 I----KLRIHSIQAELRRLLKSKPYENCL 247

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 57/422 (13%), Positives = 116/422 (27%), Gaps = 140/422 (33%)

Query: 17  WKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLAT-GDRG-GRVVL-------FERTDT 67
           +  +QVF +         + +  A+   +   ++   G  G G+  +       ++    
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 68  RDNG------GQRRD----LEMM-------DYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110
            D                 LEM+       D + +   +     + + H  +   L+ L 
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRL- 237

Query: 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170
                  ++     N    LL   +       VQ  K    F+                 
Sbjct: 238 -------LKSKPYENC---LLVLLN-------VQNAKAWNAFN----------------- 263

Query: 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAH 230
                                C                  +++T++   +          
Sbjct: 264 -------------------LSC-----------------KILLTTRFKQV---------- 277

Query: 231 AHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290
                 + +S  +   T IS D   + L   E+ +     +D +P   +DL   + +   
Sbjct: 278 -----TDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYLDCRP---QDLPREVLTT-- 325

Query: 291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE----EQEAPGTRSFFTEIIASISD 346
           +P   +++A S   G     + +    CD  + + E      E    R  F  +  S+  
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRL--SV-- 380

Query: 347 IKFARNGRHILSRDYMTLK-LWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHT 405
             F     HI +   + L  +W    D        V   L    +   K       +I +
Sbjct: 381 --F-PPSAHIPT---ILLSLIWF---DVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPS 430

Query: 406 LY 407
           +Y
Sbjct: 431 IY 432

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 20/158 (12%), Positives = 51/158 (32%), Gaps = 37/158 (23%)

Query: 230  HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA 288
              H   ++ +  + DG +F++A DD  I +W  +   ++  IV           +     
Sbjct: 879  RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV----------LKQEIDV 928

Query: 289  EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348
             F      M+    +   ++LI  +   +                        A +S   
Sbjct: 929  VFQENE-TMVLAVDNIRGLQLIAGKTGQIDYLPE-------------------AQVSCCC 968

Query: 349  FARNGRHIL--SRDYMTLKLWDINMDSG-PVATFQVHE 383
             + +  ++     D   +K+ ++   +    ++   H+
Sbjct: 969  LSPHLEYVAFGDEDG-AIKIIEL--PNNRVFSSGVGHK 1003

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 38/261 (14%), Positives = 82/261 (31%), Gaps = 67/261 (25%)

Query: 134 NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193
           ND  +KLW + +K+ +       H            + V+     +  +           
Sbjct: 721 NDFFLKLWDLNQKECRNTM--FGH-----------TNSVNHC--RFSPDD----ELLASC 761

Query: 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-----HDYHINSISNNSDGETF 248
           S D +        LRL  V ++ E   +   R   +        +  +   S ++DG+  
Sbjct: 762 SADGT--------LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 813

Query: 249 ISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308
           I A   ++ L+++  S     I              I   +F P + ++   + S+  + 
Sbjct: 814 IVAAKNKVLLFDIHTSGLLAEI-------HTGHHSTIQYCDFSP-YDHLAVIALSQYCVE 865

Query: 309 LIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL--SRDYMT 363
           L ++           H                    + +  + F+ +G   L  S D  T
Sbjct: 866 LWNIDSRLKVADCRGHL-------------------SWVHGVMFSPDGSSFLTASDDQ-T 905

Query: 364 LKLWDINMDSGPVATFQVHEH 384
           +++W+         +  V + 
Sbjct: 906 IRVWET--KKVCKNSAIVLKQ 924

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 40/162 (24%)

Query: 230  HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA 288
              H   +  I   +DG+T IS+ +D  I +WN +               ++   E +   
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---------TGDYVFLQAHQETVKDF 1050

Query: 289  EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEIIASIS 345
                   + L   S  G++++ ++    +      H                     ++ 
Sbjct: 1051 RLLQD--SRLLSWSFDGTVKVWNVITGRIERDFTCHQ-------------------GTVL 1089

Query: 346  DIKFARNGRHIL--SRDYMTLKLWDINMDSG-PVATFQVHEH 384
                + +       S D  T K+W    D   P+   + H  
Sbjct: 1090 SCAISSDATKFSSTSAD-KTAKIWSF--DLLSPLHELKGHNG 1128

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 36/165 (21%)

Query: 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA 288
            AH+  +   + +SD     +   D ++ +W+            V     ++ +E +   
Sbjct: 654 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL------VHT--YDEHSEQVNCC 705

Query: 289 EFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEIIASI 344
            F    +  +LA  S+   ++L D+ Q    +T   H+                    S+
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT-------------------NSV 746

Query: 345 SDIKFARNGRHIL--SRDYMTLKLWDINMDSGPVATFQVHEHLRP 387
           +  +F+ +   +   S D  TL+LWD+   +    +  V      
Sbjct: 747 NHCRFSPDDELLASCSADG-TLRLWDVR-SANERKSINVKRFFLS 789

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 21/155 (13%), Positives = 48/155 (30%), Gaps = 30/155 (19%)

Query: 232  HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290
             +  ++    +   E      +D  I +  L  +N+ F+             + +   +F
Sbjct: 960  PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP-NNRVFSS-------GVGHKKAVRHIQF 1011

Query: 291  HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350
                   L  SS    I++ +                    G   F      ++ D +  
Sbjct: 1012 TA-DGKTLISSSEDSVIQVWNW-----------------QTGDYVFLQAHQETVKDFRLL 1053

Query: 351  RNGRHILSRDYMTLKLWDINMDSG-PVATFQVHEH 384
            ++ R +      T+K+W++   +G     F  H+ 
Sbjct: 1054 QDSRLLSWSFDGTVKVWNV--ITGRIERDFTCHQG 1086

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 38/161 (23%)

Query: 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290
           H   +     + DG+   S   D  + ++  E   +          +++   + +    F
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK--------LLDIKAHEDEVLCCAF 665

Query: 291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEIIASISDI 347
                + +A  S+   +++ D     L  T   HS+                    ++  
Sbjct: 666 SS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSE-------------------QVNCC 705

Query: 348 KFARNGRHIL----SRDYMTLKLWDINMDSGPVATFQVHEH 384
            F     H+L    S D+  LKLWD+N       T   H +
Sbjct: 706 HFTNKSNHLLLATGSNDF-FLKLWDLN-QKECRNTMFGHTN 744

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 46/297 (15%), Positives = 81/297 (27%), Gaps = 84/297 (28%)

Query: 115 INKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173
           +  I W ++ N +  +++   DKT+K W  +      V      PE+             
Sbjct: 130 VKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQ---LPERC----------YC 175

Query: 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLV-------AGCRR 226
           A                          P         VV T++   +V       +  RR
Sbjct: 176 A----------------------DVIYPMA-------VVATAERGLIVYQLENQPSEFRR 206

Query: 227 IYAHAHDYHINSISNNSDGETFISA-----DDLRINLWNLEISNQSFNI-------VDVK 274
           I +    +    ++   D +   +       + R+ +  +   N + +         +  
Sbjct: 207 IESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT 265

Query: 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334
             +       +    FHP H   LA   S G     D       D  +KL   ++     
Sbjct: 266 NTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDK------DARTKLKTSEQLDQ-- 316

Query: 335 SFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATF--QVHEHLRPK 388
                    IS   F  NG        Y   K  +          F     E L+P+
Sbjct: 317 --------PISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPR 365

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 47.1 bits (113), Expect = 5e-06
 Identities = 19/160 (11%), Positives = 41/160 (25%), Gaps = 28/160 (17%)

Query: 230 HAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS 287
                   S    +DG+        D  I                 +  N  +  EV+ +
Sbjct: 6   AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR---------HARQINTLNHGEVVCA 56

Query: 288 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347
                     +  +  KG +++ D+              + +     +        I   
Sbjct: 57  VTISN-PTRHVY-TGGKGCVKVWDISHPGNKSP----VSQLDCLNRDN-------YIRSC 103

Query: 348 KFARNGRHILS--RDYMTLKLWDINMDSGPV-ATFQVHEH 384
           K   +G  ++       TL +WD+   +  + A       
Sbjct: 104 KLLPDGCTLIVGGEAS-TLSIWDLAAPTPRIKAELTSSAP 142

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 14/160 (8%)

Query: 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290
           H   I     + D ++   A      + + L  +      +DV+     D T V+   +F
Sbjct: 14  HSKPIPPFLLDLDSQSVPDALKKQTNDYYILY-NPALPREIDVELHKSLDHTSVVCCVKF 72

Query: 291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEIIASISDI 347
                  LA +    + ++  +   +L       S   ++ E   T S        I  +
Sbjct: 73  SN-DGEYLA-TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS-SPSSDLYIRSV 129

Query: 348 KFARNGRHIL--SRDYMTLKLWDINMDSG-PVATFQVHEH 384
            F+ +G+ +   + D   +++WDI  ++   V   Q HE 
Sbjct: 130 CFSPDGKFLATGAEDR-LIRIWDI--ENRKIVMILQGHEQ 166

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 22/162 (13%), Positives = 40/162 (24%), Gaps = 24/162 (14%)

Query: 231 AHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA 288
                   +S +               +   +    ++   +V          + V+T+ 
Sbjct: 16  TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDG-DSKVPPVVQFT----GHGSSVVTTV 70

Query: 289 EFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347
           +F P      L      G +         +                +S F  +   ISDI
Sbjct: 71  KFSPIKGSQYLCSGDESGKVI--------VWGWTFDKESNSVEVNVKSEFQVLAGPISDI 122

Query: 348 KFARNGRHIL----SRDYMTLKLWDINMDSG-PVATFQVHEH 384
            +   GR +      RD           DSG  +     H  
Sbjct: 123 SWDFEGRRLCVVGEGRDN-FGVFISW--DSGNSLGEVSGHSQ 161

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 27/231 (11%), Positives = 63/231 (27%), Gaps = 37/231 (16%)

Query: 115 INKIRWC--QSANSALYLLST--NDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFG 169
           +  ++W     A   +  LS    + TI   ++        VF     P           
Sbjct: 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLI 269

Query: 170 SHVSAIPKSYMA----NGGCGERNFGCASNDSSFPPGGVSSLR-LPVVVTSQETNLVA-- 222
           +    +  + +     NG   E +       S +     S +  +    +  E  +V+  
Sbjct: 270 TTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329

Query: 223 ---GCRRIY------------AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266
              G   I+            +     ++  +       ++I +     +       +  
Sbjct: 330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA 389

Query: 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317
              +              IT+      H  M+   S+ GS+ + +  +  L
Sbjct: 390 VHPL--------VSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLL 431

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 27/165 (16%), Positives = 48/165 (29%), Gaps = 40/165 (24%)

Query: 232 HDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA 288
               ++ I  +S G++  +          + +L    +S+ +              +TS 
Sbjct: 28  QTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSL----KSYKLHRT----ASPFDRRVTSL 79

Query: 289 EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-----HSKLFEEQEAPGTRSFFTEIIAS 343
           E+HPTH   +A  S  G I L D                                    +
Sbjct: 80  EWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD-------------------A 120

Query: 344 ISDIKFA-RNGRHIL--SRDYMTLKLWDINMDSGPV-ATFQVHEH 384
           I+ +KF   N   +   S       L D +     V A     ++
Sbjct: 121 ITGMKFNQFNTNQLFVSSIRG-ATTLRDFSGSVIQVFAKTDSWDY 164

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 32/262 (12%), Positives = 73/262 (27%), Gaps = 72/262 (27%)

Query: 134 NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI---PK--SYMANGGCGER 188
               I LW    +                      G  ++ +       + +        
Sbjct: 94  KGGDIILWDYDVQNKTSFIQGMGP-----------GDAITGMKFNQFNTNQLFVS----- 137

Query: 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA--HAHDYHINSISNNSDGE 246
                S   +          L         +      +++A   + DY    +  +   +
Sbjct: 138 -----SIRGA--------TTL--------RDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQ 176

Query: 247 TFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSK 304
              + D   R+ L            +D      E L    +T AEF+P    ++A SS  
Sbjct: 177 MLATGDSTGRLLLLG----------LDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226

Query: 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA-RNGRHILSRDY-M 362
            +++L D+R     +++      ++              ++   F   +   +L+ D   
Sbjct: 227 ATVKLWDLRNIKDKNSYIAEMPHEK-------------PVNAAYFNPTDSTKLLTTDQRN 273

Query: 363 TLKLWDINMDSGPVATFQVHEH 384
            ++++    D        +H H
Sbjct: 274 EIRVYSSY-DWSKPDQIIIHPH 294

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 29/157 (18%)

Query: 231 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 289
                +  I  +      ++     R+ +WN E   +      V+   ++     + + +
Sbjct: 11  NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE------VRS--IQVTETPVRAGK 62

Query: 290 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349
           F     N +   S    IR+ +       +T  K+ +          F      I  I  
Sbjct: 63  FIAR-KNWIIVGSDDFRIRVFNY------NTGEKVVD----------FEAHPDYIRSIAV 105

Query: 350 ARNGRHIL--SRDYMTLKLWDINMDSGPVATFQVHEH 384
                ++L  S D +T+KLW+   +     TF+ HEH
Sbjct: 106 HPTKPYVLSGSDD-LTVKLWNWENNWALEQTFEGHEH 141

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 39/165 (23%)

Query: 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA 288
            AH  +I SI+ +      +S  DDL + LWN E +N +           E     +   
Sbjct: 94  EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE-NNWA------LEQTFEGHEHFVMCV 146

Query: 289 EFHPTHCNMLAYSSSKGSIRLIDMRQSA----LCDTHSKLFEEQEAPGTRSFFTEIIASI 344
            F+P   +  A      ++++  + QS     L     +                    +
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER-------------------GV 187

Query: 345 SDIKF--ARNGRHILS--RDYMTLKLWDINMDSG-PVATFQVHEH 384
           + + +    +  ++++   D  T+K+WD    +   VAT + H  
Sbjct: 188 NYVDYYPLPDKPYMITASDDL-TIKIWD--YQTKSCVATLEGHMS 229

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 32/157 (20%), Positives = 66/157 (42%), Gaps = 31/157 (19%)

Query: 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290
           H  ++   + N      +S   D  + +W+++          +K   +   ++ +++  F
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC------LKT--LPAHSDPVSAVHF 157

Query: 291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350
           +    +++  SS  G  R+ D        T   L ++   P            +S +KF+
Sbjct: 158 NR-DGSLIVSSSYDGLCRIWDTASGQCLKT---LIDDDNPP------------VSFVKFS 201

Query: 351 RNGRHIL--SRDYMTLKLWDINMDSG-PVATFQVHEH 384
            NG++IL  + D  TLKLWD +   G  + T+  H++
Sbjct: 202 PNGKYILAATLDN-TLKLWDYS--KGKCLKTYTGHKN 235

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 28/182 (15%), Positives = 47/182 (25%), Gaps = 43/182 (23%)

Query: 210 PVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 269
            + V      ++  CR I       H    ++    +  +        L  L+       
Sbjct: 60  CLWVGLAGPQILPPCRSI-VRTLHQHKLGRASWPSVQQGLQQ----SFLHTLDSYRI--- 111

Query: 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL--IDMRQSALCDT---HSKL 324
                           TS  +HPTH + +A  S  G I L    ++              
Sbjct: 112 -----LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG-- 164

Query: 325 FEEQEAPGTRSFFTEIIASISDIKFA-RNGRHIL--SRDYMTLKLWDINMDSGPVATFQV 381
                             SI+ +KF   N       S +  T +L D       +  F  
Sbjct: 165 -----------------GSITGLKFNPLNTNQFYASSME-GTTRLQDF--KGNILRVFAS 204

Query: 382 HE 383
            +
Sbjct: 205 SD 206

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 20/184 (10%), Positives = 56/184 (30%), Gaps = 41/184 (22%)

Query: 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA 288
              +    S+  ++     ++  +   + L N++           +  N+    + +T  
Sbjct: 206 DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK---------ELWNLRMHKKKVTHV 256

Query: 289 EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT------HSKLFEEQEAPGTRSFFTEIIA 342
             +P     LA +S   ++++ D+RQ     +      H                     
Sbjct: 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH------------------- 297

Query: 343 SISDIKFARNGRHIL--SRDYMTLKLWDINMDSG-PVATFQVHEHLRPKVMHSSKNYFMG 399
            ++   F+ +G  +L   +    ++++               H H   + +   K  +  
Sbjct: 298 PVNAACFSPDGARLLTTDQK-SEIRVYSA--SQWDCPLGLIPHPHRHFQHLTPIKAAWHP 354

Query: 400 LDNI 403
             N+
Sbjct: 355 RYNL 358

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 23/169 (13%), Positives = 59/169 (34%), Gaps = 18/169 (10%)

Query: 232 HDYHINSISNNSDGETF---ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS 287
            +  + S   +                ++ L +L+  +            ++   + I +
Sbjct: 140 FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------SHI--LQGHRQEILA 191

Query: 288 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347
             + P +  +LA +S+   ++L D+R+++ C         +++    S  T     ++ +
Sbjct: 192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251

Query: 348 KFARNGRHILS--RDYMTLKLWDINMDSG-PVATFQVHEHLRPKVMHSS 393
            F  +G H+L+   D   ++LW+    +G              K     
Sbjct: 252 CFTSDGLHLLTVGTD-NRMRLWNS--SNGENTLVNYGKVCNNSKKGLKF 297

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 18/138 (13%), Positives = 51/138 (36%), Gaps = 23/138 (16%)

Query: 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290
           H+  I ++S+++DG+T  SA  +  IN W++     +           +    +IT  + 
Sbjct: 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-------PDVHATMITGIKT 375

Query: 291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350
                  L   S    ++++    S +               +++   ++ +    +  +
Sbjct: 376 TSK--GDLFTVSWDDHLKVVPAGGSGV-------------DSSKAVANKLSSQPLGLAVS 420

Query: 351 RNGRHILSRDYMTLKLWD 368
            +G   ++  Y  + ++ 
Sbjct: 421 ADGDIAVAACYKHIAIYS 438

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 22/163 (13%), Positives = 46/163 (28%), Gaps = 30/163 (18%)

Query: 224 CRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283
             R++   H   I  I   S G+ F  + D  + +     S       D   A    L+ 
Sbjct: 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV-----DSSKAVANKLSS 412

Query: 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343
                         +A ++    I +           H KL E   +  +          
Sbjct: 413 QPLGLAVSAD--GDIAVAACYKHIAIYS---------HGKLTEVPISYNSSC-------- 453

Query: 344 ISDIKFARNGRHIL--SRDYMTLKLWDINMDSGPVATFQVHEH 384
              +  + + + +    +D   + ++ ++  S       VH  
Sbjct: 454 ---VALSNDKQFVAVGGQDS-KVHVYKLSGASVSEVKTIVHPA 492

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 34/145 (23%)

Query: 231 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 289
           AH   +  ++ + DG    SA  D  I +WN+           +                
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV---EKTIPVGT----RIEDQQLG 289

Query: 290 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEIIASISD 346
              T    L   S+ G I  ++    ++      H+K                   +I+ 
Sbjct: 290 IIWT-KQALVSISANGFINFVNPELGSIDQVRYGHNK-------------------AITA 329

Query: 347 IKFARNGRHIL--SRDYMTLKLWDI 369
           +  + +G+ +     +   +  WDI
Sbjct: 330 LSSSADGKTLFSADAEG-HINSWDI 353

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 7/181 (3%), Positives = 29/181 (16%), Gaps = 33/181 (18%)

Query: 212 VVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI--SADDLRINLWNLEISNQSFN 269
            +       +                 I   ++ +           +    L++      
Sbjct: 137 PIKESALGNIPTIAFCDT-DSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT--- 192

Query: 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC----DTHSKLF 325
           I+     ++          E         A   +     + +    A      +  +   
Sbjct: 193 ILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGT--- 249

Query: 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHIL--SRDYMTLKLWDINMDSGPVATFQVHE 383
                            + +              +              + P   ++   
Sbjct: 250 ----------------DAAAQPAAIPAQAGADWTAAPA-PAAGGWDTAAA-PAPGWEQGS 291

Query: 384 H 384
            
Sbjct: 292 A 292

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 22/163 (13%), Positives = 49/163 (30%), Gaps = 36/163 (22%)

Query: 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290
           H  ++++ S  +     ++A  D    LW++E          ++          +   + 
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL------LQS--FHGHGADVLCLDL 204

Query: 291 HPTHC-NMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEIIASISD 346
            P+   N            + DMR          H                    + ++ 
Sbjct: 205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE-------------------SDVNS 245

Query: 347 IKFARNGRHIL--SRDYMTLKLWDINMDSGPVATFQVHEHLRP 387
           +++  +G      S D  T +L+D+  D   VA +     +  
Sbjct: 246 VRYYPSGDAFASGSDD-ATCRLYDLRADR-EVAIYSKESIIFG 286

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 72/245 (29%)

Query: 134 NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193
            D ++KLW++  K++                                        ++   
Sbjct: 181 MDHSLKLWRINSKRMMNAIKE----------------SY----------------DY--- 205

Query: 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252
           + + +  P     +  P   T                 H  +++ +     G+  +S   
Sbjct: 206 NPNKTNRPFISQKIHFPDFSTRD--------------IHRNYVDCVR--WLGDLILSKSC 249

Query: 253 DLRINLWNLEISNQSFNIVDVKPAN------MEDLTEVITSAEFHP-THCNMLAYSSSKG 305
           +  I  W         + +    +N       +     I    F       MLA  +  G
Sbjct: 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG 309

Query: 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS--RDYMT 363
            + + D+                +           I   S   F+R+   +++   D  +
Sbjct: 310 KLYVWDLEVEDPHKAKCTTLTHHKCGAA-------IRQTS---FSRDSSILIAVCDD-AS 358

Query: 364 LKLWD 368
           +  WD
Sbjct: 359 IWRWD 363

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 22/145 (15%)

Query: 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302
                 S  D    NL+   +  +   +       ++     +T     P   +M+  +S
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMMTEQMTLRGT----LKGHNGWVTQIATTPQFPDMILSAS 58

Query: 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS--RD 360
              +I +  +            +   +              +SD+  + +G+  LS   D
Sbjct: 59  RDKTIIMWKL------TRDETNYGIPQRA-----LRGHSHFVSDVVISSDGQFALSGSWD 107

Query: 361 YMTLKLWDINMDSG-PVATFQVHEH 384
             TL+LWD+   +G     F  H  
Sbjct: 108 G-TLRLWDLT--TGTTTRRFVGHTK 129

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 202 GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLW 259
           GG + L LP+  T +    V          H   +  I+     +  I S  +D  + +W
Sbjct: 55  GGGAFLVLPLGKTGRVDKNVPLVC-----GHTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109

Query: 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 319
            +        + +     +E  T+ +    +HPT  N+L  +     I + D+       
Sbjct: 110 EIPDGGLVLPLREPV-ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV------- 161

Query: 320 THSKLFEEQEAPGTRSFF--TEIIASISDIKFARNGRHIL--SRDYMTLKLWDINMDSGP 375
                     A  T       + I S+    ++R+G  I    RD   +++ +    +  
Sbjct: 162 ------GTGAAVLTLGPDVHPDTIYSVD---WSRDGALICTSCRDK-RVRVIEPRKGTVV 211

Query: 376 VATFQVHEHLRP 387
               + HE  RP
Sbjct: 212 AEKDRPHEGTRP 223

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 30/157 (19%)

Query: 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290
           H   + S+S   D   F+S   D    LW++            +          I +  F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC------RQT--FTGHESDINAICF 234

Query: 291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350
            P   N  A  S   + RL D+R      T+S                 II  I+ + F+
Sbjct: 235 FPN-GNAFATGSDDATCRLFDLRADQELMTYS--------------HDNIICGITSVSFS 279

Query: 351 RNGRHIL--SRDYMTLKLWDINMDSG-PVATFQVHEH 384
           ++GR +L    D+    +WD              H++
Sbjct: 280 KSGRLLLAGYDDF-NCNVWDA--LKADRAGVLAGHDN 313

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 22/161 (13%)

Query: 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290
           H   I SI  +   +  ++   D  I LW++                       +   EF
Sbjct: 73  HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW---------KSPVPVKRVEF 123

Query: 291 HPTHCNMLAYSSSK-----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345
            P   N             GSI + ++ +        +L +  E P  +    E + + +
Sbjct: 124 SPC-GNYFLAILDNVMKNPGSINIYEIERD---SATHELTKVSEEPIHKIITHEGLDAAT 179

Query: 346 DIKFARNGRHILS--RDYMTLKLWDINMDSGPVATFQVHEH 384
              ++  G++I++  +D   +  +D++ +   V +  +HE 
Sbjct: 180 VAGWSTKGKYIIAGHKD-GKISKYDVSNNYEYVDSIDLHEK 219

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 28/165 (16%)

Query: 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290
           HD++++S+S   +G+  +SA  D  I +W ++          VK        E +     
Sbjct: 191 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC------VKT--FTGHREWVRMVRP 242

Query: 291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HSKL-----FEEQEAPGTRSFFTEIIA 342
           +     ++A  S+  ++R+  +           H  +     +    AP +         
Sbjct: 243 NQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW----APESSYSSISEAT 297

Query: 343 SISDIKFARNGRHIL--SRDYMTLKLWDINMDSG-PVATFQVHEH 384
                K  + G  +L  SRD  T+K+WD++  +G  + T   H++
Sbjct: 298 GSETKKSGKPGPFLLSGSRD-KTIKMWDVS--TGMCLMTLVGHDN 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.98
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.98
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.76
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.74
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.71
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.7
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.69
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.67
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.66
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.66
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.64
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.64
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.62
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.57
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.56
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.55
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.51
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.51
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.5
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.5
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.48
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.46
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.45
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.45
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.44
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.43
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.42
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.42
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.41
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.39
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.38
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.38
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.37
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.37
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.36
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.28
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.27
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.26
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.25
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.22
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.22
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.2
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.15
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.15
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.14
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.1
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.09
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.05
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.0
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.92
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.91
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.9
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.88
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.87
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.86
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.84
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.81
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.81
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.74
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.73
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.68
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.67
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.67
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.66
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.63
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.6
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.52
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.51
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.45
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.44
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.42
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.4
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.39
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.37
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.35
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.32
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.32
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.31
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.27
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.25
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.25
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.22
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.17
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.16
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.13
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.03
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.01
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.01
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.01
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.0
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.97
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.97
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.96
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.95
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.94
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.88
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.84
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.81
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.78
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.77
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.72
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.72
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.72
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.71
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.61
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.59
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.59
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.58
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.55
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.54
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.42
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.38
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.37
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.35
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.32
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.3
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.28
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.25
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.24
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.19
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.13
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.05
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.92
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.88
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.86
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.84
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.83
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.75
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.74
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.62
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.56
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.5
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.4
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.34
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.33
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.29
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.28
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.22
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.98
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.93
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.52
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.37
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.89
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.87
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.82
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.76
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	93.48
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.25
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.51
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.99
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	91.83
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.94
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	90.77
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.47
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	88.6
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	87.71
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	87.37
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	86.68
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	86.03
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	85.02
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	84.71
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	83.87
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	80.42

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3e-40  Score=287.13  Aligned_cols=264  Identities=16%  Similarity=0.182  Sum_probs=219.6

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++|+|++++|++|+.||+|+|||+.++.                       .+..+..|.          
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----------------------~~~~~~~~~----------   55 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-----------------------EVRSIQVTE----------   55 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS----------
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----------------------eeEEeeccC----------
Confidence            35799999999999999999999999999999988764                       345677887          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        .+|.+++|+|+  +.+|++|+.|++|++||+.+++....+..+..        .+.       +++|+|++..+    
T Consensus        56 --~~v~~~~~~~~--~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~--------~v~-------~~~~~~~~~~l----  112 (304)
T 2ynn_A           56 --TPVRAGKFIAR--KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD--------YIR-------SIAVHPTKPYV----  112 (304)
T ss_dssp             --SCEEEEEEEGG--GTEEEEEETTSEEEEEETTTCCEEEEEECCSS--------CEE-------EEEECSSSSEE----
T ss_pred             --CcEEEEEEeCC--CCEEEEECCCCEEEEEECCCCcEEEEEeCCCC--------cEE-------EEEEcCCCCEE----
Confidence              77999999866  78999999999999999999988877766533        344       78999999988    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                              ++++.|+.|++|| +....     ..... +.+|...|.+++|+| ++..|++| .|++|++||++......
T Consensus       113 --------~sgs~D~~v~lWd-~~~~~-----~~~~~-~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~  177 (304)
T 2ynn_A          113 --------LSGSDDLTVKLWN-WENNW-----ALEQT-FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF  177 (304)
T ss_dssp             --------EEEETTSCEEEEE-GGGTT-----EEEEE-ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE
T ss_pred             --------EEECCCCeEEEEE-CCCCc-----chhhh-hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence                    9999999999999 43311     12223 478999999999999 57899998 99999999998555444


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcC--CCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      ..       ...|...+..+.|+|  ++ .+|++|+.|++|++||+++++.+    ..+.+|            ...|.+
T Consensus       178 ~~-------~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~~----~~~~~h------------~~~v~~  233 (304)
T 2ynn_A          178 TL-------TTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCV----ATLEGH------------MSNVSF  233 (304)
T ss_dssp             EE-------ECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTTEEE----EEEECC------------SSCEEE
T ss_pred             ee-------ccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCCccc----eeeCCC------------CCCEEE
Confidence            33       345667889999987  55 79999999999999999988654    566666            578999


Q ss_pred             EEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEE
Q 015363          347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVM  390 (408)
Q Consensus       347 ~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  390 (408)
                      ++|+|++.+|++|+ |++|++||+++ +++++++..|......+.
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~  277 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLKIWNSST-YKVEKTLNVGLERSWCIA  277 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTT-CCEEEEECCSSSSEEEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCC-CceeeeccCCCccEEEEE
Confidence            99999999999985 79999999998 799999998877666665

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.7e-40  Score=290.61  Aligned_cols=281  Identities=19%  Similarity=0.269  Sum_probs=225.2

Q ss_pred             ceeeccceEEEEECCC----CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccc
Q 015363           31 EVQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~----~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  106 (408)
                      ..+|.+.|++++|+|+    +.+|++|+.|++|+||++.+...                     .....+.+|.      
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------------~~~~~l~gh~------   80 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------------DLQWSLEGHQ------   80 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS------
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---------------------eeeeeeccCC------
Confidence            3479999999999985    67999999999999999876532                     1344678898      


Q ss_pred             cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                            ..|.+++|+|+  +.++++++.|++|++||+.+++....+..+..        .+.       .++|+|+++.+
T Consensus        81 ------~~v~~~~~~~~--~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~--------~~~-------~~~~spdg~~l  137 (321)
T 3ow8_A           81 ------LGVVSVDISHT--LPIAASSSLDAHIRLWDLENGKQIKSIDAGPV--------DAW-------TLAFSPDSQYL  137 (321)
T ss_dssp             ------SCEEEEEECSS--SSEEEEEETTSEEEEEETTTTEEEEEEECCTT--------CCC-------CEEECTTSSEE
T ss_pred             ------CCEEEEEECCC--CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc--------cEE-------EEEECCCCCEE
Confidence                  77999999755  77999999999999999999987776654322        122       68999999998


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                  ++++.++.|++|+ +...      ..... +..|...+.+++|+|++++|+++ .|+.|++||+++ .
T Consensus       138 ------------~~g~~dg~v~i~~-~~~~------~~~~~-~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~  196 (321)
T 3ow8_A          138 ------------ATGTHVGKVNIFG-VESG------KKEYS-LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-G  196 (321)
T ss_dssp             ------------EEECTTSEEEEEE-TTTC------SEEEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-T
T ss_pred             ------------EEEcCCCcEEEEE-cCCC------ceeEE-ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-C
Confidence                        9999999999999 4332      22223 26677889999999999999999 999999999984 4


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      +....       +.+|...|++++|+|++ ++|++|+.|+.|++||++++...    ..+.+|            ...|.
T Consensus       197 ~~~~~-------~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~----~~~~~h------------~~~v~  252 (321)
T 3ow8_A          197 KLLHT-------LEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLA----GTLSGH------------ASWVL  252 (321)
T ss_dssp             EEEEE-------ECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEE----EEECCC------------SSCEE
T ss_pred             cEEEE-------EcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCccee----EEEcCC------------CCceE
Confidence            44433       57899999999999999 99999999999999999987553    455555            57899


Q ss_pred             EEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCee-eee--eceeeec
Q 015363          346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYF-MGL--DNIHTLY  407 (408)
Q Consensus       346 ~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--d~~~~~~  407 (408)
                      +++|+|++++|++++ |++|++||+++ +++++++.+|......+....++.. +..  |...+||
T Consensus       253 ~~~~sp~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw  317 (321)
T 3ow8_A          253 NVAFCPDDTHFVSSSSDKSVKVWDVGT-RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY  317 (321)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCC-CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            999999999999985 79999999998 7999999999888777765445443 332  4445554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-40  Score=299.36  Aligned_cols=281  Identities=17%  Similarity=0.291  Sum_probs=233.3

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|.++|++++|+|++.+|++|+.||+|+|||+.+++.                       ...+.+|.         
T Consensus       103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----------------------~~~l~~h~---------  150 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------ERTLKGHT---------  150 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------CEEECCCS---------
T ss_pred             eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEEeccC---------
Confidence            3457999999999999999999999999999999987753                       45788898         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|.+++|+|+  +.+|++|+.|++|++||+.++++...+..+..        .+.       ++.|+|++..+   
T Consensus       151 ---~~V~~v~~~~~--~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~--------~V~-------~v~~~p~~~~l---  207 (410)
T 1vyh_C          151 ---DSVQDISFDHS--GKLLASCSADMTIKLWDFQGFECIRTMHGHDH--------NVS-------SVSIMPNGDHI---  207 (410)
T ss_dssp             ---SCEEEEEECTT--SSEEEEEETTSCCCEEETTSSCEEECCCCCSS--------CEE-------EEEECSSSSEE---
T ss_pred             ---CcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCC--------CEE-------EEEEeCCCCEE---
Confidence               77999999754  88999999999999999999887776655432        344       78999999987   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                               ++++.|+.|++|| +..      ..+...+ .+|...|.+++++|++.+|+++ .|+.|++||+.+.. ..
T Consensus       208 ---------~s~s~D~~i~~wd-~~~------~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-~~  269 (410)
T 1vyh_C          208 ---------VSASRDKTIKMWE-VQT------GYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CK  269 (410)
T ss_dssp             ---------EEEETTSEEEEEE-TTT------CCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EE
T ss_pred             ---------EEEeCCCeEEEEE-CCC------CcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-ee
Confidence                     9999999999999 433      3444554 7899999999999999999999 99999999998543 33


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCC--------------------CCceEEEEeCCCeEEEEEcCCCceecccccccccc
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPT--------------------HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  328 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~--------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  328 (408)
                      ..       +.+|...|.+++|+|+                    + .+|++|+.|+.|++||++++...    ..+.+|
T Consensus       270 ~~-------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~sgs~D~~i~iwd~~~~~~~----~~~~~h  337 (410)
T 1vyh_C          270 AE-------LREHRHVVECISWAPESSYSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTGMCL----MTLVGH  337 (410)
T ss_dssp             EE-------ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C-CEEEEEETTSEEEEEETTTTEEE----EEEECC
T ss_pred             eE-------ecCCCceEEEEEEcCcccccchhhhccccccccCCCC-CEEEEEeCCCeEEEEECCCCceE----EEEECC
Confidence            32       5778999999999996                    4 68999999999999999988654    555555


Q ss_pred             cCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeee---eeecee
Q 015363          329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM---GLDNIH  404 (408)
Q Consensus       329 ~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~  404 (408)
                                  ...|.+++|+|+|++|++|+ |+.|++||+.+ +++++++.+|......+....++..+   +.|...
T Consensus       338 ------------~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i  404 (410)
T 1vyh_C          338 ------------DNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV  404 (410)
T ss_dssp             ------------SSCEEEEEECSSSSCEEEEETTTEEEEECCTT-SCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred             ------------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence                        47899999999999999985 79999999987 79999999999887777654444443   236666


Q ss_pred             eecC
Q 015363          405 TLYE  408 (408)
Q Consensus       405 ~~~~  408 (408)
                      ++|+
T Consensus       405 ~vW~  408 (410)
T 1vyh_C          405 KVWE  408 (410)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6664

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.4e-38  Score=278.62  Aligned_cols=280  Identities=15%  Similarity=0.254  Sum_probs=222.4

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++|+|++++|++|+.||+|+|||..++.                       ....+..|.          
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----------------------~~~~~~~~~----------   97 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----------------------KVHAIPLRS----------   97 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----------------------EEEEEECSS----------
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----------------------cceEeecCC----------
Confidence            45799999999999999999999999999999987664                       245567777          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc----EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                        ..|.+++|+|+  +.++++++.|+.|++|++.+.+    ....+..+        .+.+.       ++.|++++. +
T Consensus        98 --~~v~~~~~s~~--~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h--------~~~v~-------~~~~~~~~~-l  157 (340)
T 1got_B           98 --SWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGH--------TGYLS-------CCRFLDDNQ-I  157 (340)
T ss_dssp             --SCEEEEEECTT--SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECC--------SSCEE-------EEEEEETTE-E
T ss_pred             --ccEEEEEECCC--CCEEEEEeCCCeEEEEECccCCCcceeEEEecCC--------CccEE-------EEEECCCCc-E
Confidence              77999999755  8899999999999999998653    22223332        22333       577888776 4


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                  ++++.|+.|++|| +..      ..+...+ .+|...|.+++|+|++++|++| .|+.|++||+++. 
T Consensus       158 ------------~s~s~d~~i~~wd-~~~------~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-  216 (340)
T 1got_B          158 ------------VTSSGDTTCALWD-IET------GQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-  216 (340)
T ss_dssp             ------------EEEETTSCEEEEE-TTT------TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-
T ss_pred             ------------EEEECCCcEEEEE-CCC------CcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-
Confidence                        8889999999999 432      2333443 7899999999999999999999 9999999999854 


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      .....       +.+|...|++++|+|++ .+|++|+.|++|++||+++++..    ..+..+          .+...|.
T Consensus       217 ~~~~~-------~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~----~~~~~~----------~~~~~v~  274 (340)
T 1got_B          217 MCRQT-------FTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQEL----MTYSHD----------NIICGIT  274 (340)
T ss_dssp             SEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECCT----------TCCSCEE
T ss_pred             eeEEE-------EcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEE----EEEccC----------CcccceE
Confidence            34333       57899999999999999 99999999999999999987543    222211          1135799


Q ss_pred             EEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee---eeceeeec
Q 015363          346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG---LDNIHTLY  407 (408)
Q Consensus       346 ~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~  407 (408)
                      +++|+|+|++|++|+ |+.|++||+.+ ++.+..+.+|......+....++..++   .|...+||
T Consensus       275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~-~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          275 SVSFSKSGRLLLAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEECCCCCEEEEECCCCeEEEEEccc-CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            999999999999995 69999999997 789999999999888887655555442   35555665

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.9e-39  Score=293.06  Aligned_cols=326  Identities=59%  Similarity=0.945  Sum_probs=240.5

Q ss_pred             ccCcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcc
Q 015363           11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (408)
Q Consensus        11 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~   90 (408)
                      ...++.|+|.|+|++.  .++++|.+.|++++|+|+|++||+|+.||.|+||++.++...            .....+++
T Consensus         6 ~~~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~------------~~~~~~~~   71 (447)
T 3dw8_B            6 GGNDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKI------------QSHSRGEY   71 (447)
T ss_dssp             --CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------------CCCCCCE
T ss_pred             CCcceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCC------------Ccccccce
Confidence            4568899999999873  456889999999999999999999999999999999876521            00122355


Q ss_pred             ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEee
Q 015363           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (408)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  170 (408)
                      +....+.+|..+++++.++.....|++++|+|+.+..+|++++.|++|++||+.+++..........             
T Consensus        72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~-------------  138 (447)
T 3dw8_B           72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKE-------------  138 (447)
T ss_dssp             EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------------
T ss_pred             eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccC-------------
Confidence            6678899999999999999999999999998764337999999999999999987654322111000             


Q ss_pred             cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE
Q 015363          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS  250 (408)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~  250 (408)
                                .+|..             .....-..+.+.. +...+......+.+.+..+|...|++++|+|++++|++
T Consensus       139 ----------~~g~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  194 (447)
T 3dw8_B          139 ----------EDGRY-------------RDPTTVTTLRVPV-FRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS  194 (447)
T ss_dssp             ------------------------------CCCCCSCCCCE-EEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE
T ss_pred             ----------ccccc-------------cCcccccceEecc-ccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE
Confidence                      00000             0000001111111 11111111223334444789999999999999999999


Q ss_pred             ecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC
Q 015363          251 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  330 (408)
Q Consensus       251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  330 (408)
                      |.|+.|++||++........+.+++..+.+|...|++++|+|+++.+|++|+.|+.|++||++++..+...+..+..|..
T Consensus       195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  274 (447)
T 3dw8_B          195 ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPED  274 (447)
T ss_dssp             ECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC--
T ss_pred             eCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCC
Confidence            99999999999966667776666666788999999999999997689999999999999999998764444577777765


Q ss_pred             CCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccc
Q 015363          331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRP  387 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~  387 (408)
                      +.....+.+|...|.+++|+|+|++|++++++.|++||+++.++++..+.+|...+.
T Consensus       275 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~  331 (447)
T 3dw8_B          275 PSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRS  331 (447)
T ss_dssp             ---CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred             ccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccc
Confidence            555566677777999999999999999996699999999976799999999986554

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.8e-38  Score=277.72  Aligned_cols=249  Identities=13%  Similarity=0.113  Sum_probs=194.6

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|...|++++|+|++ .|++|+.||+|+|||+.+++..                   ......+.+|.          
T Consensus        78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~-------------------~~~~~~~~~H~----------  127 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL-------------------IVSKFCKYEHD----------  127 (344)
T ss_dssp             EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC-------------------EEEEEEEECCS----------
T ss_pred             eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce-------------------eEeeccccCCC----------
Confidence            34577889999999986 5889999999999999887642                   11223456788          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|++++|+|+  |++|++|+.|++|++||+.+++....+..+..        .|.       ++.|++++..+    
T Consensus       128 --~~V~~v~~spd--g~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~--------~V~-------~~~~~~~~~~~----  184 (344)
T 4gqb_B          128 --DIVSTVSVLSS--GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA--------QVT-------CVAASPHKDSV----  184 (344)
T ss_dssp             --SCEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEEEECCCSS--------CEE-------EEEECSSCTTE----
T ss_pred             --CCEEEEEECCC--CCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC--------ceE-------EEEecCCCCCc----
Confidence              77999999754  88999999999999999999998888776533        354       68999998643    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceee-ccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCCCce
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                             +++++.|+.|++|| +...+      +...+ ...+...+.+++|+|+ +++|++| .|+.|++||+++.+ +
T Consensus       185 -------l~s~s~D~~v~iwd-~~~~~------~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-~  249 (344)
T 4gqb_B          185 -------FLSCSEDNRILLWD-TRCPK------PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-C  249 (344)
T ss_dssp             -------EEEEETTSCEEEEE-TTSSS------CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---C
T ss_pred             -------eeeecccccccccc-ccccc------eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-E
Confidence                   38899999999999 54322      22221 1345567899999996 5678888 89999999999544 3


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      +..       +.+|...|++++|+|++.++|++|+.|++|+|||+++++.     ..+.+|            .+.|.++
T Consensus       250 ~~~-------~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-----~~~~~H------------~~~V~~v  305 (344)
T 4gqb_B          250 VLS-------SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-----FRSQAH------------RDFVRDA  305 (344)
T ss_dssp             CEE-------EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-----EEECCC------------SSCEEEE
T ss_pred             EEE-------EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-----EEEcCC------------CCCEEEE
Confidence            332       6789999999999999866899999999999999998754     234445            5889999


Q ss_pred             EEccCCC-EEEEeC-CCeEEEEECCC
Q 015363          348 KFARNGR-HILSRD-YMTLKLWDINM  371 (408)
Q Consensus       348 ~~spdg~-~l~s~~-d~~v~~wd~~~  371 (408)
                      +|+|+++ +|++|+ |++|++|++.+
T Consensus       306 ~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          306 TWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             EEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            9999986 566775 89999999976

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.5e-37  Score=272.74  Aligned_cols=282  Identities=16%  Similarity=0.255  Sum_probs=221.1

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|.+.|++++|+|++++||+|+.||+|+|||..++..                       ...+..|.         
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----------------------~~~~~~~~---------  106 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----------------------EHAVTMPC---------  106 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------EEEEECSS---------
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----------------------ceEEecCC---------
Confidence            4568999999999999999999999999999999776542                       34555666         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc------EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK------VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  183 (408)
                         ..|.+++|+|+  |.++++++.|+.+++|++....      ....+..+        .+.+.       .+.|+|++
T Consensus       107 ---~~v~~~~~sp~--g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h--------~~~v~-------~~~~~~~~  166 (354)
T 2pbi_B          107 ---TWVMACAYAPS--GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH--------TNYLS-------ACSFTNSD  166 (354)
T ss_dssp             ---SCCCEEEECTT--SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEEC--------SSCEE-------EEEECSSS
T ss_pred             ---CCEEEEEECCC--CCEEEEeeCCCCEEEEEEeccccccccccceeeecc--------CCcEE-------EEEEeCCC
Confidence               66999999765  8899999999999999986432      11112222        22333       68999999


Q ss_pred             CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC--CCCEEEEe-cCCeEEEEe
Q 015363          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWN  260 (408)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d~~i~iwd  260 (408)
                      ..+            ++++.|+.|++|| +..      .++...+ .+|...|.+++|+|  ++++|++| .|+.|++||
T Consensus       167 ~~l------------~t~s~D~~v~lwd-~~~------~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd  226 (354)
T 2pbi_B          167 MQI------------LTASGDGTCALWD-VES------GQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD  226 (354)
T ss_dssp             SEE------------EEEETTSEEEEEE-TTT------CCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEE
T ss_pred             CEE------------EEEeCCCcEEEEe-CCC------CeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            887            9999999999999 433      3344444 78999999999987  46899999 999999999


Q ss_pred             CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      +++. ++...       +..|...|++++|+|++ .+|++|+.|++|++||++++...    ..+..+.          +
T Consensus       227 ~~~~-~~~~~-------~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~----~~~~~~~----------~  283 (354)
T 2pbi_B          227 MRSG-QCVQA-------FETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREV----AIYSKES----------I  283 (354)
T ss_dssp             TTTC-CEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECCTT----------C
T ss_pred             CCCC-cEEEE-------ecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE----EEEcCCC----------c
Confidence            9954 44433       57799999999999999 99999999999999999987543    2222221          1


Q ss_pred             cceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee---eeceeeec
Q 015363          341 IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG---LDNIHTLY  407 (408)
Q Consensus       341 ~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~  407 (408)
                      ...+.+++|+|+|++|++|+ |+.|++||+.+ ++.+..+.+|......+....++..++   .|...+||
T Consensus       284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~-~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLK-GSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             ccceeEEEEeCCCCEEEEEECCCcEEEEECCC-CceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            24689999999999999985 79999999987 789999999999887777655555443   25555555

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.5e-37  Score=266.95  Aligned_cols=283  Identities=17%  Similarity=0.297  Sum_probs=222.5

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++|+|++++||+|+.||.|+||+..+++                       ....+.+|.          
T Consensus        19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------------------~~~~~~~h~----------   65 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------------------FEKTISGHK----------   65 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred             EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------------------cchhhccCC----------
Confidence            35799999999999999999999999999999987654                       345677888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|.+++|+|+  +.+|++++.|+.|++||+.+++....+..+..        .+.       ++.|+|++..+    
T Consensus        66 --~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--------~v~-------~~~~~~~~~~l----  122 (312)
T 4ery_A           66 --LGISDVAWSSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--------YVF-------CCNFNPQSNLI----  122 (312)
T ss_dssp             --SCEEEEEECTT--SSEEEEEETTSEEEEEETTTCCEEEEEECCSS--------CEE-------EEEECSSSSEE----
T ss_pred             --CceEEEEEcCC--CCEEEEECCCCEEEEEECCCCcEEEEEcCCCC--------CEE-------EEEEcCCCCEE----
Confidence              77999999754  88999999999999999999988777665432        344       68999999987    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              ++++.|+.|++|| +..      ..+...+ ..|...|.+++|+|++++|+++ .|+.|++||+++......
T Consensus       123 --------~s~~~d~~i~iwd-~~~------~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~  186 (312)
T 4ery_A          123 --------VSGSFDESVRIWD-VKT------GKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT  186 (312)
T ss_dssp             --------EEEETTSCEEEEE-TTT------CCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             --------EEEeCCCcEEEEE-CCC------CEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE
Confidence                    9999999999999 433      2333443 7788999999999999999999 999999999995443332


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      .       ...+...+..++|+|++ ++|++++.|+.|++||+++++..    ..+.+|...         ...+.....
T Consensus       187 ~-------~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~---------~~~~~~~~~  245 (312)
T 4ery_A          187 L-------IDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKCL----KTYTGHKNE---------KYCIFANFS  245 (312)
T ss_dssp             E-------CCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEE----EEECSSCCS---------SSCCCEEEE
T ss_pred             E-------eccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EEEEecCCc---------eEEEEEEEE
Confidence            2       34566789999999999 99999999999999999988654    555555321         012222333


Q ss_pred             ccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee-e----eceeeec
Q 015363          350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG-L----DNIHTLY  407 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----d~~~~~~  407 (408)
                      .+++.+|++|+ |+.|++||+.+ ++.++.+.+|......+....++..++ .    |...++|
T Consensus       246 ~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W  308 (312)
T 4ery_A          246 VTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW  308 (312)
T ss_dssp             CSSSCEEEECCTTSCEEEEETTT-CCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred             eCCCcEEEEECCCCEEEEEECCC-chhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence            46789999986 79999999997 799999999988766655444444433 2    5555555

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.6e-38  Score=283.33  Aligned_cols=244  Identities=17%  Similarity=0.292  Sum_probs=204.0

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|.+.|++++|+|++++|++|+.||+|+|||+.+.+                       .+..+.+|.         
T Consensus       145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~-----------------------~~~~~~~h~---------  192 (410)
T 1vyh_C          145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE-----------------------CIRTMHGHD---------  192 (410)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC-----------------------EEECCCCCS---------
T ss_pred             EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------------------eeEEEcCCC---------
Confidence            345699999999999999999999999999999987654                       356678888         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|.+++|+|+  +.+|++++.|++|++||+.++.+...+..+..        .+.       .+.++|++..+   
T Consensus       193 ---~~V~~v~~~p~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~--------~v~-------~~~~~~~g~~l---  249 (410)
T 1vyh_C          193 ---HNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--------WVR-------MVRPNQDGTLI---  249 (410)
T ss_dssp             ---SCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSS--------CEE-------EEEECTTSSEE---
T ss_pred             ---CCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc--------cEE-------EEEECCCCCEE---
Confidence               77999999765  78999999999999999999988877765532        344       68899999987   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC--------------------CCEEE
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--------------------GETFI  249 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--------------------~~~l~  249 (408)
                               ++++.|+.|++|| +..      ..+...+ ..|...|.+++|+|+                    +.+|+
T Consensus       250 ---------~s~s~D~~v~vwd-~~~------~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  312 (410)
T 1vyh_C          250 ---------ASCSNDQTVRVWV-VAT------KECKAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL  312 (410)
T ss_dssp             ---------EEEETTSCEEEEE-TTT------CCEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred             ---------EEEcCCCeEEEEE-CCC------CceeeEe-cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE
Confidence                     9999999999999 433      2333443 788999999999996                    66899


Q ss_pred             Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc
Q 015363          250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  328 (408)
Q Consensus       250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  328 (408)
                      +| .|+.|++||+++ +.+...       +.+|...|++++|+|++ .+|++|+.|+.|++||+++++..    ..+.+|
T Consensus       313 sgs~D~~i~iwd~~~-~~~~~~-------~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~----~~~~~h  379 (410)
T 1vyh_C          313 SGSRDKTIKMWDVST-GMCLMT-------LVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCM----KTLNAH  379 (410)
T ss_dssp             EEETTSEEEEEETTT-TEEEEE-------EECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCC----EEEECC
T ss_pred             EEeCCCeEEEEECCC-CceEEE-------EECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceE----EEEcCC
Confidence            98 999999999994 444433       57799999999999999 99999999999999999887543    555555


Q ss_pred             cCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECC
Q 015363          329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       329 ~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~  370 (408)
                                  ...|.+++|+|++.+|++|+ |++|++|+++
T Consensus       380 ------------~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          380 ------------EHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             ------------SSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             ------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence                        47899999999999999985 7999999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.2e-37  Score=269.08  Aligned_cols=256  Identities=14%  Similarity=0.192  Sum_probs=208.2

Q ss_pred             cceeeccceEEEEECCCC-CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~-~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ...+|.+.|++++|+|++ ++|++|+.|++|++|++.+....                  ....+..+.+|.        
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------------~~~~~~~~~~h~--------   65 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------------FGVPVRSFKGHS--------   65 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE------------------EEEEEEEEECCS--------
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc------------------ccccceEEeCCc--------
Confidence            345799999999999964 89999999999999998654310                  112355788898        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          ..|.+++|+|  ++.+|++++.|++|++||+.+++....+..+..        .+.       ++.|+|++..+  
T Consensus        66 ----~~v~~~~~s~--dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~--------~v~-------~~~~~~~~~~l--  122 (319)
T 3frx_A           66 ----HIVQDCTLTA--DGAYALSASWDKTLRLWDVATGETYQRFVGHKS--------DVM-------SVDIDKKASMI--  122 (319)
T ss_dssp             ----SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------CEE-------EEEECTTSCEE--
T ss_pred             ----ccEEEEEECC--CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCC--------cEE-------EEEEcCCCCEE--
Confidence                7799999965  488999999999999999999988877766532        354       78999999988  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC------CCEEEEe-cCCeEEEEeC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD------GETFISA-DDLRINLWNL  261 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------~~~l~~~-~d~~i~iwd~  261 (408)
                                ++++.|+.|++|| +.       ..+...+ .+|...|.+++++|.      +..++++ .|+.|++||+
T Consensus       123 ----------~s~s~D~~i~vwd-~~-------~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~  183 (319)
T 3frx_A          123 ----------ISGSRDKTIKVWT-IK-------GQCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL  183 (319)
T ss_dssp             ----------EEEETTSCEEEEE-TT-------SCEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEET
T ss_pred             ----------EEEeCCCeEEEEE-CC-------CCeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEEC
Confidence                      9999999999999 43       2334443 789999999999985      4478888 9999999999


Q ss_pred             CCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363          262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                      +.. +....       +.+|...|.+++|+|++ .+|++|+.|+.|++||+++++..    ..+..+             
T Consensus       184 ~~~-~~~~~-------~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~-------------  237 (319)
T 3frx_A          184 NQF-QIEAD-------FIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAM----YTLSAQ-------------  237 (319)
T ss_dssp             TTT-EEEEE-------ECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEECC-------------
T ss_pred             Ccc-hhhee-------ecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecCC-------------
Confidence            843 33322       57899999999999999 99999999999999999988654    455444             


Q ss_pred             ceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeee
Q 015363          342 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~  380 (408)
                      ..|.+++|+|++.+|+++.+..+++|+++. +..+..+.
T Consensus       238 ~~v~~~~~sp~~~~la~~~~~~i~v~~~~~-~~~~~~~~  275 (319)
T 3frx_A          238 DEVFSLAFSPNRYWLAAATATGIKVFSLDP-QYLVDDLR  275 (319)
T ss_dssp             SCEEEEEECSSSSEEEEEETTEEEEEEETT-EEEEEEEC
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCcEEEEeCc-CeeeeccC
Confidence            579999999999999999887899999986 45555554

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-37  Score=268.66  Aligned_cols=261  Identities=14%  Similarity=0.240  Sum_probs=199.1

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      .+|.+.|++++|+|+|++||+|+.|++|+||++.+..                     .+.+..+.+|.           
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~---------------------~~~~~~l~gH~-----------   53 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE-----------   53 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC---------------------BCCCEEECCCS-----------
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC---------------------cEEEEEEcccc-----------
Confidence            4799999999999999999999999999999987542                     12456788998           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE--EEEeccCCCCcccCCCCCeEeecCCceeeEEccC--CCeee
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN--GGCGE  187 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~l~  187 (408)
                       ..|.+++|+|..++.+|++++.|++|++||+.+++.  ...+..+        ...+.       +++|+|+  +..+ 
T Consensus        54 -~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h--------~~~v~-------~v~~~p~~~g~~l-  116 (297)
T 2pm7_B           54 -GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVH--------SASVN-------SVQWAPHEYGPML-  116 (297)
T ss_dssp             -SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCC--------SSCEE-------EEEECCGGGCSEE-
T ss_pred             -CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecC--------CCcee-------EEEeCcCCCCcEE-
Confidence             779999997644578999999999999999987743  2222222        22344       7899997  7776 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-------------CCEEEEe-cC
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-------------GETFISA-DD  253 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-------------~~~l~~~-~d  253 (408)
                                 ++++.|+.|++|| +......    .... ..+|...|++++|+|+             +++|++| .|
T Consensus       117 -----------~s~s~d~~v~~wd-~~~~~~~----~~~~-~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D  179 (297)
T 2pm7_B          117 -----------LVASSDGKVSVVE-FKENGTT----SPII-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD  179 (297)
T ss_dssp             -----------EEEETTSEEEEEE-BCSSSCB----CCEE-EECCSSCEEEEEECCCC------------CCEEEEEETT
T ss_pred             -----------EEEECCCcEEEEE-ecCCCce----eeee-eecccCccceEeecCCcccccccCCCCCCcceEEEEcCC
Confidence                       9999999999999 5432111    1122 3789999999999997             4689998 99


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC--CceEEEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH--CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  331 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  331 (408)
                      ++|++||++.........    ..+.+|...|.+++|+|++  ..+|++++.|++|+|||++....... ...+.     
T Consensus       180 ~~v~lwd~~~~~~~~~~~----~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~-~~~~~-----  249 (297)
T 2pm7_B          180 NLVKIWKYNSDAQTYVLE----STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK-KTLLK-----  249 (297)
T ss_dssp             SCEEEEEEETTTTEEEEE----EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE-EEESS-----
T ss_pred             CcEEEEEEcCCCceEEEE----EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccc-eeeee-----
Confidence            999999998554322221    1367899999999999984  37999999999999999987531000 01111     


Q ss_pred             CCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCC
Q 015363          332 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDS  373 (408)
Q Consensus       332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~  373 (408)
                           ..+|...|.+++|+|+|++|++++ |+.|++|+....+
T Consensus       250 -----~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g  287 (297)
T 2pm7_B          250 -----EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (297)
T ss_dssp             -----SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             -----cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence                 023357899999999999999985 7999999987543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.2e-38  Score=279.56  Aligned_cols=287  Identities=17%  Similarity=0.279  Sum_probs=206.9

Q ss_pred             eeeccceEEEEECCCCCeEEEeec------CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDR------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY  105 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  105 (408)
                      ..|...|++++|||||++||+|+.      |+.|++|+..++..                   ...+.....+|.     
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~-------------------~~~~~~~~~~~~-----   94 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP-------------------NESLCTAGVQTE-----   94 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC----------------------CGGGCSEEEECS-----
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc-------------------ceeEecccCCCC-----
Confidence            469999999999999999999997      77899998766542                   122233445566     


Q ss_pred             ccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                             ..|++++|+|+  + .+++++.||+|++||+.+++..........    ...+.|.       +++|+|+++.
T Consensus        95 -------~~V~~~~~s~d--~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~----~h~~~V~-------~v~~spdg~~  153 (357)
T 4g56_B           95 -------AGVTDVAWVSE--K-GILVASDSGAVELWEILEKESLLVNKFAKY----EHDDIVK-------TLSVFSDGTQ  153 (357)
T ss_dssp             -------SCEEEEEEETT--T-EEEEEETTSCEEEC--------CCCCEEEC----CCSSCEE-------EEEECSSSSE
T ss_pred             -------CCEEEEEEcCC--C-CEEEEECCCEEEEeeccccceeEEEeeccC----CCCCCEE-------EEEECCCCCE
Confidence                   77999999764  5 577889999999999988765433221110    0123454       7899999999


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCC
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEI  263 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~  263 (408)
                      +            ++++.|+.|++|| +..      .++...+ .+|...|++++|+|++. +++++ .|+.|++||+++
T Consensus       154 l------------~sgs~dg~v~iwd-~~~------~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~  213 (357)
T 4g56_B          154 A------------VSGGKDFSVKVWD-LSQ------KAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK  213 (357)
T ss_dssp             E------------EEEETTSCEEEEE-TTT------TEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS
T ss_pred             E------------EEEeCCCeEEEEE-CCC------CcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC
Confidence            8            9999999999999 432      3344444 78999999999999875 67777 899999999985


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                      .......      ....+...+++++|+|++..+|++|+.|+.|++||+++++..    ..+.+|            ...
T Consensus       214 ~~~~~~~------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~----~~~~~~------------~~~  271 (357)
T 4g56_B          214 PKPATRI------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA----QTSAVH------------SQN  271 (357)
T ss_dssp             SSCBCBC------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC----EEECCC------------SSC
T ss_pred             Cceeeee------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe----EEEecc------------cee
Confidence            5433221      245577889999999987689999999999999999987543    555555            478


Q ss_pred             eEEEEEccCC-CEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEe-cCCCeee---eeeceeeec
Q 015363          344 ISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMH-SSKNYFM---GLDNIHTLY  407 (408)
Q Consensus       344 i~~~~~spdg-~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~d~~~~~~  407 (408)
                      |.+++|+|++ ++|++|+ |++|+|||+++ +++++.+ +|......+.. +.++..+   +.|...++|
T Consensus       272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW  339 (357)
T 4g56_B          272 ITGLAYSYHSSPFLASISEDCTVAVLDADF-SEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHH  339 (357)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECTTS-CEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence            9999999987 5788885 79999999987 6666554 78887666653 3455544   235554444

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2e-37  Score=271.10  Aligned_cols=243  Identities=14%  Similarity=0.191  Sum_probs=204.2

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|...|.+++|++++.++++|+.|++|+|||+.+++                       .+..+..|.          
T Consensus        76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~-----------------------~~~~~~~~~----------  122 (321)
T 3ow8_A           76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-----------------------QIKSIDAGP----------  122 (321)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCT----------
T ss_pred             eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----------------------EEEEEeCCC----------
Confidence            45799999999999999999999999999999988765                       245566666          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..+.+++|+|+  +++|++++.|+.|++|++.+++....+..+..        .+.       +++|+|+++.+    
T Consensus       123 --~~~~~~~~spd--g~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--------~v~-------~~~~spdg~~l----  179 (321)
T 3ow8_A          123 --VDAWTLAFSPD--SQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--------FIL-------SIAYSPDGKYL----  179 (321)
T ss_dssp             --TCCCCEEECTT--SSEEEEECTTSEEEEEETTTCSEEEEEECSSS--------CEE-------EEEECTTSSEE----
T ss_pred             --ccEEEEEECCC--CCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--------eEE-------EEEECCCCCEE----
Confidence              66899999755  88999999999999999999887766554422        233       68999999998    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              ++++.|+.|++|| +..      .++...+ .+|...|++++|+|++++|+++ .|+.|++||++... ...
T Consensus       180 --------asg~~dg~i~iwd-~~~------~~~~~~~-~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~-~~~  242 (321)
T 3ow8_A          180 --------ASGAIDGIINIFD-IAT------GKLLHTL-EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-LAG  242 (321)
T ss_dssp             --------EEEETTSCEEEEE-TTT------TEEEEEE-CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC-EEE
T ss_pred             --------EEEcCCCeEEEEE-CCC------CcEEEEE-cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc-eeE
Confidence                    9999999999999 432      3334443 7899999999999999999999 89999999998443 333


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      .       +.+|...|.+++|+|++ .+|++++.|++|++||+++++.+    ..+.+|            ...|.+++|
T Consensus       243 ~-------~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~----~~~~~h------------~~~v~~v~~  298 (321)
T 3ow8_A          243 T-------LSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRTCV----HTFFDH------------QDQVWGVKY  298 (321)
T ss_dssp             E-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECCC------------SSCEEEEEE
T ss_pred             E-------EcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCEEE----EEEcCC------------CCcEEEEEE
Confidence            2       67899999999999999 89999999999999999988654    555555            478999999


Q ss_pred             ccCCCEEEEeC-CCeEEEEECC
Q 015363          350 ARNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd~~  370 (408)
                      +|++++|++++ |+.|++||..
T Consensus       299 s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          299 NGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCCCEEEEEeCCCeEEEEeCC
Confidence            99999999985 7999999973

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-37  Score=276.40  Aligned_cols=291  Identities=14%  Similarity=0.244  Sum_probs=209.3

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccc------cc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF------DY  105 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~------~~  105 (408)
                      ..|.+.|+|++|+|+|++||+|+ ++.++||++.++...                       ..+..|....      ..
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~-----------------------~~l~~~~~~~~~~~~~~~  116 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV-----------------------ARLSDDSAANKDPENLNT  116 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE-----------------------EEECC-------------
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE-----------------------EEecCccccccccccccc
Confidence            46999999999999999999987 679999998876531                       1222221000      00


Q ss_pred             ccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                      .........|++++|+|  +|++|++++.|++|++||+.+++....+..+..        .+.       +++|+|++..
T Consensus       117 ~~~~~~~~~v~~v~~s~--dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--------~v~-------~~~~~p~~~~  179 (393)
T 1erj_A          117 SSSPSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ--------DIY-------SLDYFPSGDK  179 (393)
T ss_dssp             ----CCCCBEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--------CEE-------EEEECTTSSE
T ss_pred             cccCCCceeEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCC--------CEE-------EEEEcCCCCE
Confidence            00001113599999975  488999999999999999999988777766532        354       7899999998


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-cCCeEEEEeCCC
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEI  263 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~  263 (408)
                      +            ++++.|+.|++|| +..      ..+...+  .+...+.+++|+| ++++|+++ .|+.|++||+++
T Consensus       180 l------------~s~s~d~~v~iwd-~~~------~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~  238 (393)
T 1erj_A          180 L------------VSGSGDRTVRIWD-LRT------GQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET  238 (393)
T ss_dssp             E------------EEEETTSEEEEEE-TTT------TEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred             E------------EEecCCCcEEEEE-CCC------CeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            8            9999999999999 433      2222222  3556799999999 88999999 999999999985


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                      . .....+........+|...|++++|+|++ ++|++|+.|+.|++||+++....    ..............+.+|...
T Consensus       239 ~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~----~~~~~~~~~~~~~~~~~h~~~  312 (393)
T 1erj_A          239 G-FLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNK----SDSKTPNSGTCEVTYIGHKDF  312 (393)
T ss_dssp             C-CEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC-------------------CEEEEEECCSSC
T ss_pred             C-cEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCc----ccccCCCCCcceEEEecccCc
Confidence            4 33333221112236789999999999999 99999999999999999875432    111111111223345667789


Q ss_pred             eEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEe
Q 015363          344 ISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMH  391 (408)
Q Consensus       344 i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~  391 (408)
                      |.+++|+|++.+|++|+ |+.|++||+.+ ++++..+.+|......+..
T Consensus       313 v~~~~~~~~~~~l~sgs~D~~v~iwd~~~-~~~~~~l~~h~~~v~~v~~  360 (393)
T 1erj_A          313 VLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVISVAV  360 (393)
T ss_dssp             EEEEEECGGGCEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCC-CeEEEEECCCCCCEEEEEe
Confidence            99999999999999985 79999999998 7999999999887666553

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3e-37  Score=273.01  Aligned_cols=271  Identities=12%  Similarity=0.222  Sum_probs=199.0

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      .+|.+.|++++|+|++++||+|+.|++|+||+.....                     .+.+..+.+|.           
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~---------------------~~~~~~~~~h~-----------  105 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD---------------------FECVTTLEGHE-----------  105 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC----------------------EEEEEEECCCS-----------
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC---------------------eEEEEEccCCC-----------
Confidence            4699999999999999999999999999999987653                     22456788898           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE---EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                       ..|.+++|+|+  +.+|++++.|++|++||+.++..   ...+..+        ...+.       .++|+|++..+  
T Consensus       106 -~~v~~v~~sp~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h--------~~~v~-------~~~~~p~~~~l--  165 (345)
T 3fm0_A          106 -NEVKSVAWAPS--GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH--------TQDVK-------HVVWHPSQELL--  165 (345)
T ss_dssp             -SCEEEEEECTT--SSEEEEEETTSCEEEEEECTTSCEEEEEEECCC--------CSCEE-------EEEECSSSSCE--
T ss_pred             -CCceEEEEeCC--CCEEEEEECCCeEEEEECCCCCCeEEEEEecCc--------CCCeE-------EEEECCCCCEE--
Confidence             77999999765  88999999999999999987642   2333332        22344       68999999987  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                ++++.|+.|++|+ ....+.    .+... +.+|...|++++|+|++++|+++ .|++|++||.......
T Consensus       166 ----------~s~s~d~~i~~w~-~~~~~~----~~~~~-~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          166 ----------ASASYDDTVKLYR-EEEDDW----VCCAT-LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             ----------EEEETTSCEEEEE-EETTEE----EEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred             ----------EEEeCCCcEEEEE-ecCCCE----EEEEE-ecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence                      9999999999999 543211    12233 37899999999999999999999 9999999997532211


Q ss_pred             eeEeec--C-----CCccc-CCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccc
Q 015363          268 FNIVDV--K-----PANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE  339 (408)
Q Consensus       268 ~~~~~~--~-----~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (408)
                      ..+...  .     ...+. .|...|.+++|+|++ ..|++++.|+.|++|+.........+...+..+       ...+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~-------~~~~  301 (345)
T 3fm0_A          230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAH-------LHQA  301 (345)
T ss_dssp             TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE-------ETTS
T ss_pred             ccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee-------eccc
Confidence            000000  0     00122 378899999999999 899999999999999988654221111111111       1346


Q ss_pred             ccceeEEEEEccCC-CEEEEeC-CCeEEEEECCCCCCceeee
Q 015363          340 IIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       340 h~~~i~~~~~spdg-~~l~s~~-d~~v~~wd~~~~~~~~~~~  379 (408)
                      |...|.+++|+|++ .+||+|+ |++|++|++.+ ++.+..+
T Consensus       302 h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~-~~~~~~~  342 (345)
T 3fm0_A          302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR-PEGLHHH  342 (345)
T ss_dssp             SSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred             ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC-CCCcccc
Confidence            67899999999998 4899985 79999999987 4544433

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2e-37  Score=273.06  Aligned_cols=293  Identities=13%  Similarity=0.203  Sum_probs=206.5

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|...|.+++|+|||++|++++ |+++++||..........            ..|.........            .+
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~------------~~~~~~~~~~~~------------~~   81 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC------------AAPNEGFCSAGV------------QT   81 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG------------GTTCGGGCSEEE------------EE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccc------------ccCCcceeeeee------------cc
Confidence            45778899999999999999887 778888874321100000            000111111112            22


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      +..|.+++|+|+  + .|++|+.||+|++||+.+++...........    ..+.|.       +++|+|+|+.+     
T Consensus        82 ~~~v~~~~~s~d--~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~----H~~~V~-------~v~~spdg~~l-----  142 (344)
T 4gqb_B           82 EAGVADLTWVGE--R-GILVASDSGAVELWELDENETLIVSKFCKYE----HDDIVS-------TVSVLSSGTQA-----  142 (344)
T ss_dssp             SSCEEEEEEETT--T-EEEEEETTSEEEEEEECTTSSCEEEEEEEEC----CSSCEE-------EEEECTTSSEE-----
T ss_pred             CCCEEEEEEeCC--C-eEEEEECCCEEEEEeccCCCceeEeeccccC----CCCCEE-------EEEECCCCCEE-----
Confidence            267999999764  4 7889999999999999988755443321100    023455       79999999998     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCceee
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                             ++++.|+.|++|| +..      .++...+ .+|...|++++|+|++. +|+++ .|++|++||+++.+....
T Consensus       143 -------~sgs~d~~i~iwd-~~~------~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  207 (344)
T 4gqb_B          143 -------VSGSKDICIKVWD-LAQ------QVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ  207 (344)
T ss_dssp             -------EEEETTSCEEEEE-TTT------TEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE
T ss_pred             -------EEEeCCCeEEEEE-CCC------CcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccccceeee
Confidence                   9999999999999 433      3444554 88999999999999984 77888 899999999995544333


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      +      ....+...+.+++|+|++.++|++|+.|+.|++||+++++.+    ..+.+|            ...|.+++|
T Consensus       208 ~------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~~~~h------------~~~v~~v~f  265 (344)
T 4gqb_B          208 I------GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----LSSAVH------------SQCVTGLVF  265 (344)
T ss_dssp             C------C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC----EEEECC------------SSCEEEEEE
T ss_pred             e------ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE----EEEcCC------------CCCEEEEEE
Confidence            2      134456678999999977589999999999999999988554    566666            578999999


Q ss_pred             ccCC-CEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEe-cCCCeeee---eeceeeec
Q 015363          350 ARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMH-SSKNYFMG---LDNIHTLY  407 (408)
Q Consensus       350 spdg-~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~d~~~~~~  407 (408)
                      +|++ ++|++|+ |++|+|||+++ ++ +..+.+|......+.. +....+++   .|....+|
T Consensus       266 sp~g~~~lasgs~D~~i~vwd~~~-~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w  327 (344)
T 4gqb_B          266 SPHSVPFLASLSEDCSLAVLDSSL-SE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHH  327 (344)
T ss_dssp             CSSSSCCEEEEETTSCEEEECTTC-CE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             ccCCCeEEEEEeCCCeEEEEECCC-Cc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence            9998 5788885 79999999987 45 4567889888766653 33344442   25544443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.8e-36  Score=265.92  Aligned_cols=257  Identities=14%  Similarity=0.203  Sum_probs=200.3

Q ss_pred             ceeeccceEEEEE-----CC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccc
Q 015363           31 EVQEVDIISAIEF-----DK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD  104 (408)
Q Consensus        31 ~~~h~~~V~~~~~-----s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  104 (408)
                      ..+|.+.|++++|     ++ ++++||+|+.|++|+|||+...+...                ........+.+|.    
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~----------------~~~~~~~~l~~h~----   76 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG----------------YFGIPHKALTGHN----   76 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS----------------BSEEEEEEECCCS----
T ss_pred             eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc----------------ccccccchhccCC----
Confidence            4579999999999     77 89999999999999999987653210                0112345678888    


Q ss_pred             cccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC
Q 015363          105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (408)
Q Consensus       105 ~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  184 (408)
                              ..|.+++|+|+  +.++++++.|++|++||+++++....+..+.        +.+.       +++|+|+++
T Consensus        77 --------~~V~~~~~~~~--~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~--------~~v~-------~v~~sp~~~  131 (343)
T 2xzm_R           77 --------HFVSDLALSQE--NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ--------SEVY-------SVAFSPDNR  131 (343)
T ss_dssp             --------SCEEEEEECSS--TTEEEEEETTSEEEEEETTSSCEEEEEECCC--------SCEE-------EEEECSSTT
T ss_pred             --------CceEEEEECCC--CCEEEEEcCCCcEEEEECCCCcEEEEEcCCC--------CcEE-------EEEECCCCC
Confidence                    77999999755  7899999999999999999998877766553        2355       789999999


Q ss_pred             eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC----------CEEEEe-cC
Q 015363          185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG----------ETFISA-DD  253 (408)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----------~~l~~~-~d  253 (408)
                      .+            ++++.|+.|++|| +.......     ......|...|.+++|+|++          .+|+++ .|
T Consensus       132 ~l------------~s~~~d~~i~~wd-~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d  193 (343)
T 2xzm_R          132 QI------------LSAGAEREIKLWN-ILGECKFS-----SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD  193 (343)
T ss_dssp             EE------------EEEETTSCEEEEE-SSSCEEEE-----CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT
T ss_pred             EE------------EEEcCCCEEEEEe-ccCCceee-----eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC
Confidence            88            9999999999999 43211100     00024788899999999987          689988 99


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCC
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT  333 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  333 (408)
                      +.|++||..  ......       +.+|...|.+++|+|++ ++|++|+.|+.|++||++.....   ...+..      
T Consensus       194 ~~i~iwd~~--~~~~~~-------~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~------  254 (343)
T 2xzm_R          194 GRLKVWNTN--FQIRYT-------FKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYP---QREFDA------  254 (343)
T ss_dssp             SEEEEEETT--TEEEEE-------EECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSC---SEEEEC------
T ss_pred             CEEEEEcCC--CceeEE-------EcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCccc---ceeecC------
Confidence            999999954  333322       56799999999999999 99999999999999999654321   122211      


Q ss_pred             ccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCcee
Q 015363          334 RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA  377 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~  377 (408)
                             ...|.+++|+|++.+|+++.|+.|++||+.+ ++...
T Consensus       255 -------~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~-~~~~~  290 (343)
T 2xzm_R          255 -------GSTINQIAFNPKLQWVAVGTDQGVKIFNLMT-QSKAP  290 (343)
T ss_dssp             -------SSCEEEEEECSSSCEEEEEESSCEEEEESSS-CCSCS
T ss_pred             -------CCcEEEEEECCCCCEEEEECCCCEEEEEeCC-CCCCc
Confidence                   2469999999999999988888999999986 44433

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.9e-37  Score=272.73  Aligned_cols=256  Identities=13%  Similarity=0.125  Sum_probs=190.2

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++|+|++. +++++.||+|+|||+.+++..                   ........+|.          
T Consensus        90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~-------------------~~~~~~~~~h~----------  139 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESL-------------------LVNKFAKYEHD----------  139 (357)
T ss_dssp             EEECSSCEEEEEEETTTE-EEEEETTSCEEEC---------------------------CCCCEEECCCS----------
T ss_pred             cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeecccccee-------------------EEEeeccCCCC----------
Confidence            457899999999999986 556788999999999876531                   01112345677          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|++++|+|+  +++|++++.|++|++||+.+++....+..+..        .+.       +++|++++..+    
T Consensus       140 --~~V~~v~~spd--g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~--------~v~-------~v~~s~~~~~~----  196 (357)
T 4g56_B          140 --DIVKTLSVFSD--GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSS--------EVN-------CVAACPGKDTI----  196 (357)
T ss_dssp             --SCEEEEEECSS--SSEEEEEETTSCEEEEETTTTEEEEEECCCSS--------CEE-------EEEECTTCSSC----
T ss_pred             --CCEEEEEECCC--CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCC--------CEE-------EEEEccCCCce----
Confidence              77999999755  88999999999999999999988887766532        344       68899988643    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCcee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                             +++++.|+.|++|| +...+....     .....|...+++++|+|++ .+|++| .|+.|++||+++.. ..
T Consensus       197 -------~~s~~~dg~v~~wd-~~~~~~~~~-----~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~-~~  262 (357)
T 4g56_B          197 -------FLSCGEDGRILLWD-TRKPKPATR-----IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD-SA  262 (357)
T ss_dssp             -------EEEEETTSCEEECC-TTSSSCBCB-----CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG-GC
T ss_pred             -------eeeeccCCceEEEE-CCCCceeee-----eeeccccccccchhhhhcccceEEEeecccceeEEECCCCc-Ee
Confidence                   38899999999999 543222111     1124566789999999985 678888 89999999999544 33


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      ..       +..|...|++++|+|++.++||+|+.|++|+|||+++++..    . ..+|            ...|++++
T Consensus       263 ~~-------~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~----~-~~~H------------~~~V~~va  318 (357)
T 4g56_B          263 QT-------SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF----R-DLSH------------RDFVTGVA  318 (357)
T ss_dssp             EE-------ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE----E-ECCC------------SSCEEEEE
T ss_pred             EE-------EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe----E-ECCC------------CCCEEEEE
Confidence            32       57789999999999998678999999999999999988543    2 2234            57899999


Q ss_pred             Ecc-CCCEEEEeC-CCeEEEEECCCCCCcee
Q 015363          349 FAR-NGRHILSRD-YMTLKLWDINMDSGPVA  377 (408)
Q Consensus       349 ~sp-dg~~l~s~~-d~~v~~wd~~~~~~~~~  377 (408)
                      |+| |+.+|++++ |++|++|++...++...
T Consensus       319 fsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~  349 (357)
T 4g56_B          319 WSPLDHSKFTTVGWDHKVLHHHLPSEGRTEN  349 (357)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECC-------
T ss_pred             EeCCCCCEEEEEcCCCeEEEEECCCCCcccc
Confidence            999 899999985 79999999987544433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.8e-37  Score=271.09  Aligned_cols=261  Identities=15%  Similarity=0.240  Sum_probs=194.4

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++|+|+|++||+|+.|++|+|||+.++..                     ..+..+.+|.          
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------~~~~~l~gH~----------   57 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------ILIADLRGHE----------   57 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------EEEEEEECCS----------
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------EEEEEEcCCC----------
Confidence            357999999999999999999999999999999876531                     1345788998          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE--EEEeccCCCCcccCCCCCeEeecCCceeeEEccC--CCee
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN--GGCG  186 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~l  186 (408)
                        ..|.+++|+|..++.+|++++.|++|++||+++++.  ...+..+.        +.+.       +++|+|+  +..+
T Consensus        58 --~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~--------~~V~-------~v~~~p~~~g~~l  120 (316)
T 3bg1_A           58 --GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD--------SSVN-------SVCWAPHDYGLIL  120 (316)
T ss_dssp             --SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS--------SCCC-------EEEECCTTTCSCE
T ss_pred             --ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC--------CceE-------EEEECCCCCCcEE
Confidence              779999997644477999999999999999998743  33333222        2233       6899998  6666


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-----------------CCEEE
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-----------------GETFI  249 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----------------~~~l~  249 (408)
                                  ++++.|+.|++|+ +.....   ...... ..+|...+.+++|+|+                 +.+|+
T Consensus       121 ------------asgs~D~~i~lwd-~~~~~~---~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (316)
T 3bg1_A          121 ------------ACGSSDGAISLLT-YTGEGQ---WEVKKI-NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA  183 (316)
T ss_dssp             ------------EEECSSSCEEEEE-ECSSSC---EEECCB-TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE
T ss_pred             ------------EEEcCCCCEEEEe-cCCCCC---cceeee-eccccCCcceEEEccccCCccccccccccCccccceEE
Confidence                        9999999999999 543211   011122 3678889999999997                 46899


Q ss_pred             Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC---CceEEEEeCCCeEEEEEcCCCceeccccccc
Q 015363          250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH---CNMLAYSSSKGSIRLIDMRQSALCDTHSKLF  325 (408)
Q Consensus       250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  325 (408)
                      +| .|+.|++||++........     ..+.+|...|++++|+|++   ..+|++++.|++|++||++...........+
T Consensus       184 sgs~D~~v~lWd~~~~~~~~~~-----~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~  258 (316)
T 3bg1_A          184 SGGCDNLIKLWKEEEDGQWKEE-----QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL  258 (316)
T ss_dssp             CCBTTSBCCEEEECTTSCEEEE-----ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE
T ss_pred             EecCCCeEEEEEeCCCCcccee-----eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh
Confidence            98 8999999999743321111     1367899999999999985   2689999999999999998632100001222


Q ss_pred             ccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCC
Q 015363          326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDS  373 (408)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~  373 (408)
                      .            +|...|.+++|+|++++|++++ |+.|++|+....+
T Consensus       259 ~------------~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g  295 (316)
T 3bg1_A          259 H------------KFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG  295 (316)
T ss_dssp             E------------ECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTS
T ss_pred             h------------cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCC
Confidence            2            3357899999999999999985 7999999987533

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1e-36  Score=289.91  Aligned_cols=287  Identities=15%  Similarity=0.176  Sum_probs=213.2

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|.+.|++++|+|+|++||+|+.||+|+|||+.+++..                     ....+.+|.         
T Consensus        54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~---------------------~~~~~~~~~---------  103 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---------------------LKTTIPVFS---------  103 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---------------------EEEEEECSS---------
T ss_pred             EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce---------------------eeEeecccC---------
Confidence            34579999999999999999999999999999998654321                     334677888         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCC----CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                         ..|.+++|+|+  +++|++++.+    +.|++||.  ++....+..+        .+.+.       +++|+|++..
T Consensus       104 ---~~v~~v~fs~d--g~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh--------~~~v~-------~v~f~p~~~~  161 (611)
T 1nr0_A          104 ---GPVKDISWDSE--SKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQ--------ARAMN-------SVDFKPSRPF  161 (611)
T ss_dssp             ---SCEEEEEECTT--SCEEEEEECCSSCSEEEEETTT--CCBCBCCCCC--------SSCEE-------EEEECSSSSC
T ss_pred             ---CceEEEEECCC--CCEEEEEECCCCceeEEEEeeC--CCCcceecCC--------CCCce-------EEEECCCCCe
Confidence               77999999754  8899988865    47888874  3333333332        23454       7899999874


Q ss_pred             -eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC
Q 015363          186 -GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI  263 (408)
Q Consensus       186 -l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~  263 (408)
                       +            ++++.|+.|++|| ...      .++...+ .+|...|++++|+|++++|+++ .|++|++||+.+
T Consensus       162 ~l------------~s~s~D~~v~lwd-~~~------~~~~~~l-~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~  221 (611)
T 1nr0_A          162 RI------------ISGSDDNTVAIFE-GPP------FKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  221 (611)
T ss_dssp             EE------------EEEETTSCEEEEE-TTT------BEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EE------------EEEeCCCeEEEEE-CCC------CeEeeee-ccccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence             5            9999999999999 322      3344444 7899999999999999999999 999999999984


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccccc--------------
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE--------------  329 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------  329 (408)
                      +. ....+........+|...|.+++|+|++ ++|++++.|++|++||+++++..    ..+..+.              
T Consensus       222 g~-~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  295 (611)
T 1nr0_A          222 GT-KTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVE----KTIPVGTRIEDQQLGIIWTKQ  295 (611)
T ss_dssp             CC-EEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEECCSSGGGCEEEEEECSS
T ss_pred             Cc-EeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcee----eeecCCCCccceeEEEEEcCC
Confidence            43 3333210001122799999999999999 99999999999999999987543    2221110              


Q ss_pred             -----------------CCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeee-eecccccceEE
Q 015363          330 -----------------APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF-QVHEHLRPKVM  390 (408)
Q Consensus       330 -----------------~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~-~~~~~~~~~~~  390 (408)
                                       .......+.+|...|.+++|+|||++|++++ |++|++||+.+ +.....+ .+|......+.
T Consensus       296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~  374 (611)
T 1nr0_A          296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIK  374 (611)
T ss_dssp             CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEE
T ss_pred             EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEE
Confidence                             0011234567889999999999999999985 79999999997 5666655 55666555554


Q ss_pred             ecCCC
Q 015363          391 HSSKN  395 (408)
Q Consensus       391 ~~~~~  395 (408)
                      ....+
T Consensus       375 ~s~~~  379 (611)
T 1nr0_A          375 TTSKG  379 (611)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            43333

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.1e-37  Score=276.66  Aligned_cols=292  Identities=16%  Similarity=0.251  Sum_probs=217.3

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++|+|++++||+|+.||+|+|||..+++                       ....+..|.          
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-----------------------~~~~~~~h~----------  108 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-----------------------KTHAIKLHC----------  108 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----------------------EEEEEECCC----------
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------cceEEecCC----------
Confidence            45799999999999999999999999999999987664                       345677887          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-------EEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-------KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  183 (408)
                        ..|.+++|+|+  |.+|++++.|+.+++|++.+....       ..+..+        .+.+.       .+.|.|++
T Consensus       109 --~~v~~~~~s~~--g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh--------~~~v~-------~~~~~~~~  169 (380)
T 3iz6_a          109 --PWVMECAFAPN--GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGH--------KGYAS-------SCQYVPDQ  169 (380)
T ss_dssp             --TTCCCCEECTT--SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCC--------SSCCC-------CCBCCSSS
T ss_pred             --CCEEEEEECCC--CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCC--------CcceE-------EEEEecCC
Confidence              67999999754  889999999999999999754211       111111        12222       56777764


Q ss_pred             C-eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-cCCeEEEEe
Q 015363          184 G-CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWN  260 (408)
Q Consensus       184 ~-~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd  260 (408)
                      . .+            ++++.|+.|++|| +.........  ...+..+|...|.+++|++ ++++|++| .|+.|++||
T Consensus       170 ~~~l------------~s~s~D~~i~~wd-~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd  234 (380)
T 3iz6_a          170 ETRL------------ITGSGDQTCVLWD-VTTGQRISIF--GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD  234 (380)
T ss_dssp             SSCE------------EEECTTSCEEEEC-TTTCCEEEEE--CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEE
T ss_pred             CCEE------------EEECCCCcEEEEE-cCCCcEEEEe--ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEE
Confidence            3 34            8999999999999 5432211110  0111257889999999987 78899999 999999999


Q ss_pred             CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      ++........       +.+|...|++++|+|++ .+|++|+.|++|++||++++...    ..+..+...     ...+
T Consensus       235 ~~~~~~~~~~-------~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~----~~~~~~~~~-----~~~~  297 (380)
T 3iz6_a          235 LRITSRAVRT-------YHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQL----QVYNREPDR-----NDNE  297 (380)
T ss_dssp             TTTTCCCCEE-------ECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEE----EEECCCCSS-----SCCS
T ss_pred             CCCCCcceEE-------ECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEE----EEecccccc-----cccc
Confidence            9855555443       67899999999999999 99999999999999999998654    333332110     1112


Q ss_pred             cceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeee----eecccccceEEecCCCeeeee---eceeeec
Q 015363          341 IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF----QVHEHLRPKVMHSSKNYFMGL---DNIHTLY  407 (408)
Q Consensus       341 ~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---d~~~~~~  407 (408)
                      ...|.+++|+|+|++|++|+ |+.|++||+.+ ++.+..+    .+|......+....++..++.   |...++|
T Consensus       298 ~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW  371 (380)
T 3iz6_a          298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW  371 (380)
T ss_dssp             SCSCSEEEECSSSSEEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             cCceEEEEECCCCCEEEEEECCCCEEEEECCC-CceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence            34589999999999999995 79999999987 6777666    678888777776555554432   4444444

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.4e-36  Score=266.79  Aligned_cols=245  Identities=18%  Similarity=0.278  Sum_probs=201.4

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|...|.+++|+|++++|++|+.|+.|++|++.+...                   ..+....+.+|.           
T Consensus        94 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-------------------~~~~~~~~~~h~-----------  143 (340)
T 1got_B           94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-------------------NVRVSRELAGHT-----------  143 (340)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB-------------------SCEEEEEEECCS-----------
T ss_pred             ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC-------------------cceeEEEecCCC-----------
Confidence            45888999999999999999999999999999876532                   223455678888           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       ..|.++.|+|+  + .+++++.|++|++||+.+++....+..+.        +.+.       +++|+|++..+     
T Consensus       144 -~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~--------~~v~-------~~~~~~~~~~l-----  199 (340)
T 1got_B          144 -GYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHT--------GDVM-------SLSLAPDTRLF-----  199 (340)
T ss_dssp             -SCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCS--------SCEE-------EEEECTTSSEE-----
T ss_pred             -ccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCC--------CceE-------EEEECCCCCEE-----
Confidence             77999999764  4 69999999999999999998877776543        2344       78999999987     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             ++++.|+.|++|| +..      ..+...+ .+|...|++++|+|++++|+++ .|++|++||++.. +....
T Consensus       200 -------~sg~~d~~v~~wd-~~~------~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~  263 (340)
T 1got_B          200 -------VSGACDASAKLWD-VRE------GMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMT  263 (340)
T ss_dssp             -------EEEETTSCEEEEE-TTT------CSEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEE
T ss_pred             -------EEEeCCCcEEEEE-CCC------CeeEEEE-cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEE
Confidence                   9999999999999 433      2344444 7899999999999999999999 9999999999944 33332


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                      +.     ...+...|++++|+|++ .+|++|+.|+.|++||+.++...    ..+.+|            ...|.+++|+
T Consensus       264 ~~-----~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~----~~~~~h------------~~~v~~~~~s  321 (340)
T 1got_B          264 YS-----HDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRA----GVLAGH------------DNRVSCLGVT  321 (340)
T ss_dssp             EC-----CTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEECC------------SSCEEEEEEC
T ss_pred             Ec-----cCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcEe----eEeecC------------CCcEEEEEEc
Confidence            21     23344579999999999 99999999999999999887654    555555            5789999999


Q ss_pred             cCCCEEEEeC-CCeEEEEE
Q 015363          351 RNGRHILSRD-YMTLKLWD  368 (408)
Q Consensus       351 pdg~~l~s~~-d~~v~~wd  368 (408)
                      |+|.+|++|+ |+.|++||
T Consensus       322 ~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          322 DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEcCCccEEecC
Confidence            9999999986 79999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=268.96  Aligned_cols=302  Identities=14%  Similarity=0.158  Sum_probs=212.7

Q ss_pred             eeecc-ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           32 VQEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~-~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      .+|.+ .|++++|+|+|++||+|+.|++|+||++.++...                    .......+|.          
T Consensus        12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------------~~~~~~~~h~----------   61 (345)
T 3fm0_A           12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------------CKSVLSEGHQ----------   61 (345)
T ss_dssp             CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------------EEEEECSSCS----------
T ss_pred             cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------------eeeeeccccC----------
Confidence            46777 8999999999999999999999999998765320                    0111235777          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE--EEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK--KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                        ..|.+++|+|+  +.+|++++.|+++++|++..+...  ..+..+        .+.|.       +++|+|+++.+  
T Consensus        62 --~~v~~~~~sp~--g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h--------~~~v~-------~v~~sp~~~~l--  120 (345)
T 3fm0_A           62 --RTVRKVAWSPC--GNYLASASFDATTCIWKKNQDDFECVTTLEGH--------ENEVK-------SVAWAPSGNLL--  120 (345)
T ss_dssp             --SCEEEEEECTT--SSEEEEEETTSCEEEEEECCC-EEEEEEECCC--------SSCEE-------EEEECTTSSEE--
T ss_pred             --CcEEEEEECCC--CCEEEEEECCCcEEEEEccCCCeEEEEEccCC--------CCCce-------EEEEeCCCCEE--
Confidence              77999999754  889999999999999999877543  333333        22354       78999999988  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                ++++.|+.|++|| +.....   ..+... +.+|...|.+++|+|++++|+++ .|+.|++||.+.... 
T Consensus       121 ----------~s~s~D~~v~iwd-~~~~~~---~~~~~~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~-  184 (345)
T 3fm0_A          121 ----------ATCSRDKSVWVWE-VDEEDE---YECVSV-LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW-  184 (345)
T ss_dssp             ----------EEEETTSCEEEEE-ECTTSC---EEEEEE-ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE-
T ss_pred             ----------EEEECCCeEEEEE-CCCCCC---eEEEEE-ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE-
Confidence                      9999999999999 543221   122333 37889999999999999999999 999999999984332 


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc-cccceeEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT-EIIASISD  346 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~  346 (408)
                      ...     ..+.+|...|++++|+|++ ++|++++.|++|++||........ .+..............+. .|...|.+
T Consensus       185 ~~~-----~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~  257 (345)
T 3fm0_A          185 VCC-----ATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQ-GVACSGSDPSWKCICTLSGFHSRTIYD  257 (345)
T ss_dssp             EEE-----EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTT-CCCCC---CEEEEEEEECSSCSSCEEE
T ss_pred             EEE-----EEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCc-cceeeccCCccceeEEecCCCCCcEEE
Confidence            211     1267899999999999999 999999999999999975432110 000000000000011122 26788999


Q ss_pred             EEEccCCCEEEEeC-CCeEEEEECCCCCC---ce-----eeeeecccccceEEecCCC-eeee---eeceeeec
Q 015363          347 IKFARNGRHILSRD-YMTLKLWDINMDSG---PV-----ATFQVHEHLRPKVMHSSKN-YFMG---LDNIHTLY  407 (408)
Q Consensus       347 ~~~spdg~~l~s~~-d~~v~~wd~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~-~~~~---~d~~~~~~  407 (408)
                      ++|+|++..|++++ |+.|++|+.+....   +.     ....+|......+...-++ .+++   .|...+||
T Consensus       258 v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W  331 (345)
T 3fm0_A          258 IAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW  331 (345)
T ss_dssp             EEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             EEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence            99999999999984 79999999875321   11     1234666665555433232 3442   25544444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2e-37  Score=283.06  Aligned_cols=269  Identities=13%  Similarity=0.125  Sum_probs=198.8

Q ss_pred             eeeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..|...|+||+|+| ++++||+|+.||.|+|||+.++...                     ....+.+|.          
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---------------------~~~~~~gH~----------  164 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---------------------TFIKGIGAG----------  164 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------------EEECCCSSS----------
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------------eEEEccCCC----------
Confidence            46888999999999 4779999999999999998876531                     334567788          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|++|+|+|. ++.+|++++.|++|++||++++........+...      ..+.       ++.++|++..+    
T Consensus       165 --~~V~~l~f~p~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~~~~l----  224 (435)
T 4e54_B          165 --GSITGLKFNPL-NTNQFYASSMEGTTRLQDFKGNILRVFASSDTIN------IWFC-------SLDVSASSRMV----  224 (435)
T ss_dssp             --CCCCEEEECSS-CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCS------CCCC-------CEEEETTTTEE----
T ss_pred             --CCEEEEEEeCC-CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCC------ccEE-------EEEECCCCCEE----
Confidence              77999999863 4679999999999999999887655444433221      1122       68899999988    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCcee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                              ++++.++.|++|| +..       ..... +.+|...|++++|+|++. +|+++ .|+.|++||++......
T Consensus       225 --------~~g~~dg~i~~wd-~~~-------~~~~~-~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~  287 (435)
T 4e54_B          225 --------VTGDNVGNVILLN-MDG-------KELWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA  287 (435)
T ss_dssp             --------EEECSSSBEEEEE-SSS-------CBCCC-SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred             --------EEEeCCCcEeeec-cCc-------ceeEE-EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc
Confidence                    9999999999999 432       22333 378999999999999986 67777 89999999998544332


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccc---------------------------
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH---------------------------  321 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------------------  321 (408)
                      ..     ....+|...|++++|+|++ .+|++++.|+.|++||++++......                           
T Consensus       288 ~~-----~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (435)
T 4e54_B          288 SF-----LYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV  361 (435)
T ss_dssp             CC-----SBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred             eE-----EEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEE
Confidence            21     1246789999999999999 99999999999999999876432100                           


Q ss_pred             ------------------ccccccccCCCCccccccccceeEEE-EEccCCCEEEEeCCCeEEEEECCCCCCc
Q 015363          322 ------------------SKLFEEQEAPGTRSFFTEIIASISDI-KFARNGRHILSRDYMTLKLWDINMDSGP  375 (408)
Q Consensus       322 ------------------~~~~~~~~~~~~~~~~~~h~~~i~~~-~~spdg~~l~s~~d~~v~~wd~~~~~~~  375 (408)
                                        ++.+..+........+.+|...|.++ +|+|+|++|++|+|+.|+|||++. +++
T Consensus       362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~-gk~  433 (435)
T 4e54_B          362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQE-ART  433 (435)
T ss_dssp             ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC-----
T ss_pred             EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCc-Cee
Confidence                              00000000000011134677778877 699999999999999999999986 554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.3e-34  Score=254.26  Aligned_cols=284  Identities=12%  Similarity=0.181  Sum_probs=217.1

Q ss_pred             ceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ..+|.+.|++|+|+|+ +++||||+.||+|+|||+...+..                  .......+.+|.         
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~------------------~~~~~~~l~~h~---------   86 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN------------------YGIPQRALRGHS---------   86 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC------------------SEEEEEEECCCS---------
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc------------------cceeeEEEeCCC---------
Confidence            4579999999999998 689999999999999999876531                  222445678888         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|.+++|+|  ++.+|++++.|+.|++|+................        +.       ...+.+++..+   
T Consensus        87 ---~~V~~~~~s~--dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~--------~~-------~~~~~~~~~~l---  143 (340)
T 4aow_A           87 ---HFVSDVVISS--DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD--------VL-------SVAFSSDNRQI---  143 (340)
T ss_dssp             ---SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC--------EE-------EEEECTTSSCE---
T ss_pred             ---CCEEEEEECC--CCCEEEEEcccccceEEeecccceeeeecCCCCc--------ee-------EEEEeecCccc---
Confidence               7799999965  4889999999999999999988776655544322        22       46778888877   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC--CEEEEe-cCCeEEEEeCCCCCc
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                               ++++.|+.+++|| +....      .......+|...+..++|++++  .+++++ .|+.|++||++. .+
T Consensus       144 ---------~s~s~d~~~~~~d-~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~  206 (340)
T 4aow_A          144 ---------VSGSRDKTIKLWN-TLGVC------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CK  206 (340)
T ss_dssp             ---------EEEETTSCEEEEC-TTSCE------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TE
T ss_pred             ---------eeecCCCeEEEEE-eCCCc------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-Cc
Confidence                     9999999999999 43211      1112236788899999998875  567777 899999999994 44


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      ....       +.+|...|++++|+|++ ++|++|+.|+.|++||+++.+.+    ..+..+             ..|.+
T Consensus       207 ~~~~-------~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~~-------------~~v~~  261 (340)
T 4aow_A          207 LKTN-------HIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHL----YTLDGG-------------DIINA  261 (340)
T ss_dssp             EEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEECS-------------SCEEE
T ss_pred             eeeE-------ecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCcee----eeecCC-------------ceEEe
Confidence            4333       57799999999999999 99999999999999999988654    455544             57999


Q ss_pred             EEEccCCCEEEEeCCCeEEEEECCCCCCceeeee---------ecccccceEEecCCCeee-e--eeceeeec
Q 015363          347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ---------VHEHLRPKVMHSSKNYFM-G--LDNIHTLY  407 (408)
Q Consensus       347 ~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~--~d~~~~~~  407 (408)
                      +.|+|++.+++++.|+.|++||++. +..+..+.         +|......+....++..+ .  .|...+||
T Consensus       262 ~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW  333 (340)
T 4aow_A          262 LCFSPNRYWLCAATGPSIKIWDLEG-KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW  333 (340)
T ss_dssp             EEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eecCCCCceeeccCCCEEEEEECCC-CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            9999999988888899999999986 55555544         455555555544444443 2  25555555

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.2e-35  Score=254.67  Aligned_cols=245  Identities=16%  Similarity=0.211  Sum_probs=197.9

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|..+|.+++|+|++++|++|+.|++|++||+.+++                       .+..+.+|.          
T Consensus        51 ~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~-----------------------~~~~~~~h~----------   97 (304)
T 2ynn_A           51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----------------------KVVDFEAHP----------   97 (304)
T ss_dssp             EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----------------------EEEEEECCS----------
T ss_pred             eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc-----------------------EEEEEeCCC----------
Confidence            34688999999999999999999999999999998765                       346788898          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCCCCeEeecCCceeeEEcc-CCCeeec
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGER  188 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~  188 (408)
                        ..|.+++|+|+  +.+|++|+.|++|++||++++. ....+..+.        ..+.       +++|+| ++..+  
T Consensus        98 --~~v~~~~~~~~--~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~--------~~v~-------~v~~~p~~~~~l--  156 (304)
T 2ynn_A           98 --DYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--------HFVM-------CVAFNPKDPSTF--  156 (304)
T ss_dssp             --SCEEEEEECSS--SSEEEEEETTSCEEEEEGGGTTEEEEEECCCC--------SCEE-------EEEECTTCTTEE--
T ss_pred             --CcEEEEEEcCC--CCEEEEECCCCeEEEEECCCCcchhhhhcccC--------CcEE-------EEEECCCCCCEE--
Confidence              77999999765  7899999999999999998774 444444442        2344       789998 56666  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC--CCCEEEEe-cCCeEEEEeCCCCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                ++++.|+.|++|| +...      .+...+...|...+..++|+|  ++.+|+++ .|++|++||+++ .
T Consensus       157 ----------~sgs~D~~v~iwd-~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-~  218 (304)
T 2ynn_A          157 ----------ASGCLDRTVKVWS-LGQS------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-K  218 (304)
T ss_dssp             ----------EEEETTSEEEEEE-TTCS------SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT-T
T ss_pred             ----------EEEeCCCeEEEEE-CCCC------CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC-C
Confidence                      9999999999999 5332      222223356667889999986  67899999 999999999994 4


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      .+...       +.+|...|.+++|+|++ .+|++|+.||+|++||+++++..    +.+..+            ...+.
T Consensus       219 ~~~~~-------~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~~----~~~~~~------------~~~~~  274 (304)
T 2ynn_A          219 SCVAT-------LEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVE----KTLNVG------------LERSW  274 (304)
T ss_dssp             EEEEE-------EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEE----EEECCS------------SSSEE
T ss_pred             cccee-------eCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcee----eeccCC------------CccEE
Confidence            44433       67899999999999999 89999999999999999988654    555555            36799


Q ss_pred             EEEEccCCC--EEEEeCCCeEEEEECCC
Q 015363          346 DIKFARNGR--HILSRDYMTLKLWDINM  371 (408)
Q Consensus       346 ~~~~spdg~--~l~s~~d~~v~~wd~~~  371 (408)
                      +++|+|++.  +|++|.+..+.+|++..
T Consensus       275 ~~~~~~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          275 CIATHPTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             EEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred             EEEECCCCCceEEEEecCCceEEEEecc
Confidence            999999875  68888888899999865

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.4e-35  Score=264.61  Aligned_cols=253  Identities=13%  Similarity=0.197  Sum_probs=194.0

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      ..|++++|+|+|++||+|+.|+.|+|||+.+++                       ....+.+|.            ..|
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v  168 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-----------------------IVMILQGHE------------QDI  168 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS------------SCE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----------------------EEEEEccCC------------CCE
Confidence            359999999999999999999999999987664                       345688898            779


Q ss_pred             eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc-CCCeeeccccccc
Q 015363          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGERNFGCAS  194 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~~~~~~~  194 (408)
                      .+++|+|+  +.+|++++.|++|++||+.+++....+....         .+.       .++++| +++.+        
T Consensus       169 ~~~~~~p~--~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---------~v~-------~~~~~~~~~~~l--------  222 (393)
T 1erj_A          169 YSLDYFPS--GDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---------GVT-------TVAVSPGDGKYI--------  222 (393)
T ss_dssp             EEEEECTT--SSEEEEEETTSEEEEEETTTTEEEEEEECSS---------CEE-------EEEECSTTCCEE--------
T ss_pred             EEEEEcCC--CCEEEEecCCCcEEEEECCCCeeEEEEEcCC---------CcE-------EEEEECCCCCEE--------
Confidence            99999755  8899999999999999999998776655422         233       678888 78887        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeec
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  273 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~  273 (408)
                          ++++.|+.|++|| +.................+|...|.+++|+|++++|+++ .|+.|++||++...........
T Consensus       223 ----~~~s~d~~v~iwd-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  297 (393)
T 1erj_A          223 ----AAGSLDRAVRVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  297 (393)
T ss_dssp             ----EEEETTSCEEEEE-TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             ----EEEcCCCcEEEEE-CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence                9999999999999 543221111100001125788999999999999999999 8999999999853221100000


Q ss_pred             ----CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          274 ----KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       274 ----~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                          ....+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++.+    ..+.+|            ...|.+++|
T Consensus       298 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~----~~l~~h------------~~~v~~v~~  360 (393)
T 1erj_A          298 NSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPL----LMLQGH------------RNSVISVAV  360 (393)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEE----EEEECC------------SSCEEEEEE
T ss_pred             CCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEE----EEECCC------------CCCEEEEEe
Confidence                001256799999999999999 99999999999999999988654    555666            578999998


Q ss_pred             cc------CCCEEEEeC-CCeEEEEECCC
Q 015363          350 AR------NGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       350 sp------dg~~l~s~~-d~~v~~wd~~~  371 (408)
                      ++      ++.+|++|+ |++|++|++..
T Consensus       361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          361 ANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             CSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             cCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            86      688999985 79999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=9.8e-35  Score=257.68  Aligned_cols=248  Identities=17%  Similarity=0.269  Sum_probs=197.9

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|...|.+++|+|+|.+||+|+.|+.+++|++......                 ........+.+|.           
T Consensus       103 ~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~-----------------~~~~~~~~~~~h~-----------  154 (354)
T 2pbi_B          103 TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE-----------------NMAAKKKSVAMHT-----------  154 (354)
T ss_dssp             ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC-----------------CSGGGCEEEEECS-----------
T ss_pred             ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc-----------------cccccceeeeccC-----------
Confidence            357788999999999999999999999999998654321                 0112234566787           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc--CCCeeecc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA--NGGCGERN  189 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~l~~~  189 (408)
                       ..|.+++|+|+  +..|++++.|++|++||+++++....+..+..        .+.       ++.++|  ++..+   
T Consensus       155 -~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~--------~v~-------~~~~~~~~~g~~l---  213 (354)
T 2pbi_B          155 -NYLSACSFTNS--DMQILTASGDGTCALWDVESGQLLQSFHGHGA--------DVL-------CLDLAPSETGNTF---  213 (354)
T ss_dssp             -SCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSS--------CEE-------EEEECCCSSCCEE---
T ss_pred             -CcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC--------CeE-------EEEEEeCCCCCEE---
Confidence             77999999755  77999999999999999999998877766533        233       466666  56676   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                               ++++.|+.|++|| +..      ..+...+ ..|...|++++|+|++.+|+++ .|++|++||++.. ...
T Consensus       214 ---------~sgs~Dg~v~~wd-~~~------~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~  275 (354)
T 2pbi_B          214 ---------VSGGCDKKAMVWD-MRS------GQCVQAF-ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-REV  275 (354)
T ss_dssp             ---------EEEETTSCEEEEE-TTT------CCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEE
T ss_pred             ---------EEEeCCCeEEEEE-CCC------CcEEEEe-cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEE
Confidence                     9999999999999 433      3344444 7899999999999999999999 9999999999843 333


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      ..+.     ...+...+.+++|+|++ .+|++|+.|+.|++||+.++..+    ..+.+|            ...|.+++
T Consensus       276 ~~~~-----~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~----~~l~~h------------~~~v~~l~  333 (354)
T 2pbi_B          276 AIYS-----KESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSRV----SILFGH------------ENRVSTLR  333 (354)
T ss_dssp             EEEC-----CTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEE----EEECCC------------SSCEEEEE
T ss_pred             EEEc-----CCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCceE----EEEECC------------CCcEEEEE
Confidence            3321     22334568999999999 99999999999999999888654    455555            57899999


Q ss_pred             EccCCCEEEEeC-CCeEEEEE
Q 015363          349 FARNGRHILSRD-YMTLKLWD  368 (408)
Q Consensus       349 ~spdg~~l~s~~-d~~v~~wd  368 (408)
                      |+|||++|++|+ |++|++|+
T Consensus       334 ~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          334 VSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ECTTSSCEEEEETTSEEEEEC
T ss_pred             ECCCCCEEEEEcCCCCEEecC
Confidence            999999999996 79999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-35  Score=265.32  Aligned_cols=269  Identities=16%  Similarity=0.253  Sum_probs=203.5

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|...|.+++|+|+|++||+|+.|+.|+||++.+....                .........+.+|.          
T Consensus       104 ~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~----------------~~~~~~~~~~~gh~----------  157 (380)
T 3iz6_a          104 IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR----------------DGNMPVSRVLTGHK----------  157 (380)
T ss_dssp             EECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC----------------CCSSTTCCBCCCCS----------
T ss_pred             EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc----------------cCCccceeeccCCC----------
Confidence            3468899999999999999999999999999998764321                01222344577888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc-CCCeeecc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGERN  189 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~~  189 (408)
                        ..|.++.|+|.. +..|++|+.|++|++||+.+++....+......   .....+.       .+.+++ ++..+   
T Consensus       158 --~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~---~h~~~v~-------~~~~~~~~~~~l---  221 (380)
T 3iz6_a          158 --GYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS---GHTADVL-------SLSINSLNANMF---  221 (380)
T ss_dssp             --SCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSS---SCCSCEE-------EEEECSSSCCEE---
T ss_pred             --cceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCC---CCccCeE-------EEEeecCCCCEE---
Confidence              779999998753 357999999999999999999887766332111   0122343       567765 66766   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                               ++++.|+.|++|| +...     ..+...+ .+|...|++++|+|++++|+++ .|++|++||+++ +...
T Consensus       222 ---------~sgs~D~~v~~wd-~~~~-----~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~  284 (380)
T 3iz6_a          222 ---------ISGSCDTTVRLWD-LRIT-----SRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQL  284 (380)
T ss_dssp             ---------EEEETTSCEEEEE-TTTT-----CCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEE
T ss_pred             ---------EEEECCCeEEEEE-CCCC-----CcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEE
Confidence                     9999999999999 5321     2233443 7899999999999999999999 999999999994 4444


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      ..+...+.....+...|++++|+|++ .+|++|+.||.|++||+..++..    ..+...        ..+|...|.+++
T Consensus       285 ~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~----~~~~~~--------~~~h~~~v~~l~  351 (380)
T 3iz6_a          285 QVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMV----LNLGTL--------QNSHEGRISCLG  351 (380)
T ss_dssp             EEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCEE----EEECCS--------CSSCCCCCCEEE
T ss_pred             EEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCceE----EEEecc--------cCCCCCceEEEE
Confidence            44332222223344568999999999 99999999999999999887654    222111        134568899999


Q ss_pred             EccCCCEEEEeC-CCeEEEEECCC
Q 015363          349 FARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       349 ~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      |+|||++|++|+ |++|++|++..
T Consensus       352 ~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          352 LSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             ECSSSSEEEEECTTSCEEEEECCS
T ss_pred             ECCCCCEEEEeeCCCCEEEEecCC
Confidence            999999999996 79999999975

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=254.02  Aligned_cols=271  Identities=14%  Similarity=0.164  Sum_probs=196.1

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeee-cc-CCcccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QS-HEPEFDYLKS  108 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~-h~~~~~~~~~  108 (408)
                      ..+|.++|++++|+|+  +||+|+.|++|+||++..+..                     .....+ .+ |.        
T Consensus        10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------------------~~~~~~~~~~h~--------   58 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------------------TLIDVLDETAHK--------   58 (330)
T ss_dssp             EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------EEEEEECTTCCC--------
T ss_pred             eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------EEEEEEecCCcc--------
Confidence            3579999999999988  999999999999999876431                     122334 33 76        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-------cEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA  181 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  181 (408)
                          ..|.+++|+|+  +.+|++++.|++|++||+...       +....+..+        .+.|.       +++|+|
T Consensus        59 ----~~v~~v~~sp~--~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h--------~~~V~-------~v~~sp  117 (330)
T 2hes_X           59 ----KAIRSVAWRPH--TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH--------ENEVK-------GVAWSN  117 (330)
T ss_dssp             ----SCEEEEEECTT--SSEEEEEETTSCEEEEEC-------CCCEEEEEEC------------CEE-------EEEECT
T ss_pred             ----CCEEEEEECCC--CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC--------CCcEE-------EEEECC
Confidence                77999999765  889999999999999998642       233333333        22344       789999


Q ss_pred             CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEe
Q 015363          182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN  260 (408)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd  260 (408)
                      +++.+            ++++.|+.|++|| +....  ....+...+ .+|...|++++|+|++.+|+++ .|++|++||
T Consensus       118 ~g~~l------------as~s~D~~v~iwd-~~~~~--~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~  181 (330)
T 2hes_X          118 DGYYL------------ATCSRDKSVWIWE-TDESG--EEYECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWK  181 (330)
T ss_dssp             TSCEE------------EEEETTSCEEEEE-CCTTC--CCCEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             CCCEE------------EEEeCCCEEEEEe-ccCCC--CCeEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            99988            9999999999999 53211  112233443 7899999999999999999999 899999999


Q ss_pred             CCCCC-ceeeEeecCCCcccCCcCCeEEEEEcCC--CCceEEEEeCCCeEEEEEcCCCceec----ccccccccccCCCC
Q 015363          261 LEISN-QSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCD----THSKLFEEQEAPGT  333 (408)
Q Consensus       261 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~  333 (408)
                      ..... .+...       +.+|...|.+++|+|+  + .+|++|+.|++|++||++.+....    .....+.       
T Consensus       182 ~~~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-------  246 (330)
T 2hes_X          182 DYDDDWECVAV-------LNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP-------  246 (330)
T ss_dssp             EETTEEEEEEE-------ECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC-------
T ss_pred             CCCCCeeEEEE-------ccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCccccceeEEeeecc-------
Confidence            87432 23332       6789999999999999  5 789999999999999997642100    0001111       


Q ss_pred             ccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCC--cee-eeeeccc-ccceEE
Q 015363          334 RSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSG--PVA-TFQVHEH-LRPKVM  390 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~--~~~-~~~~~~~-~~~~~~  390 (408)
                          ..|...|.+++|++++ +|+++ .|+.|++||..+ ++  .+. .+.+|.. ....+.
T Consensus       247 ----~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~h~~~~v~~v~  302 (330)
T 2hes_X          247 ----DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD-GEWKVFAKRALCHGVYEINVVK  302 (330)
T ss_dssp             ----SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET-TEEEEEEEESCTTTTSCEEEEE
T ss_pred             ----cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC-CceEEEeccccccccceEEEEE
Confidence                1256789999999776 56666 589999999976 42  232 2356664 344443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-34  Score=253.59  Aligned_cols=272  Identities=14%  Similarity=0.228  Sum_probs=197.4

Q ss_pred             cccceeeecccC--cCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccc
Q 015363           14 PLEWKFSQVFGE--RTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR   91 (408)
Q Consensus        14 ~~~w~~~~~~~~--~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~   91 (408)
                      -..|++...-..  .......+|...|++++|+|++++|++|+.|++|+|||+.+++                       
T Consensus        42 v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~-----------------------   98 (319)
T 3frx_A           42 LISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----------------------   98 (319)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------------------
T ss_pred             EEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC-----------------------
Confidence            456877642100  0112345799999999999999999999999999999998765                       


Q ss_pred             eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeec
Q 015363           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (408)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (408)
                      .+..+.+|.            ..|.+++|+|+  +.+|++++.|++|++||++... ...+..+.        ..+.   
T Consensus        99 ~~~~~~~h~------------~~v~~~~~~~~--~~~l~s~s~D~~i~vwd~~~~~-~~~~~~h~--------~~v~---  152 (319)
T 3frx_A           99 TYQRFVGHK------------SDVMSVDIDKK--ASMIISGSRDKTIKVWTIKGQC-LATLLGHN--------DWVS---  152 (319)
T ss_dssp             EEEEEECCS------------SCEEEEEECTT--SCEEEEEETTSCEEEEETTSCE-EEEECCCS--------SCEE---
T ss_pred             eeEEEccCC------------CcEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe-EEEEeccC--------CcEE---
Confidence            346788898            77999999654  7899999999999999997543 44433332        2233   


Q ss_pred             CCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe
Q 015363          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA  251 (408)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  251 (408)
                          .+.+.|....      ......+++++.|+.|++|| +..      ...... +.+|...|++++|+|++++|+++
T Consensus       153 ----~~~~~~~~~~------~~~~~~l~s~~~d~~i~~wd-~~~------~~~~~~-~~~h~~~v~~~~~sp~g~~l~s~  214 (319)
T 3frx_A          153 ----QVRVVPNEKA------DDDSVTIISAGNDKMVKAWN-LNQ------FQIEAD-FIGHNSNINTLTASPDGTLIASA  214 (319)
T ss_dssp             ----EEEECCC------------CCEEEEEETTSCEEEEE-TTT------TEEEEE-ECCCCSCEEEEEECTTSSEEEEE
T ss_pred             ----EEEEccCCCC------CCCccEEEEEeCCCEEEEEE-CCc------chhhee-ecCCCCcEEEEEEcCCCCEEEEE
Confidence                5677775431      00111239999999999999 433      222333 37899999999999999999999


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC
Q 015363          252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  330 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  330 (408)
                       .|+.|++||+.. .+....       +. +...|.+++|+|++ .+|++++. ..+++|++......    ..+..+. 
T Consensus       215 ~~dg~i~iwd~~~-~~~~~~-------~~-~~~~v~~~~~sp~~-~~la~~~~-~~i~v~~~~~~~~~----~~~~~~~-  278 (319)
T 3frx_A          215 GKDGEIMLWNLAA-KKAMYT-------LS-AQDEVFSLAFSPNR-YWLAAATA-TGIKVFSLDPQYLV----DDLRPEF-  278 (319)
T ss_dssp             ETTCEEEEEETTT-TEEEEE-------EE-CCSCEEEEEECSSS-SEEEEEET-TEEEEEEETTEEEE----EEECCCC-
T ss_pred             eCCCeEEEEECCC-CcEEEE-------ec-CCCcEEEEEEcCCC-CEEEEEcC-CCcEEEEeCcCeee----eccCccc-
Confidence             999999999994 444433       22 34679999999999 88888764 56999999876443    2222111 


Q ss_pred             CCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          331 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                         ......|...+.+++|+|||++|++|+ |+.|++||+.+
T Consensus       279 ---~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          279 ---AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             ---TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             ---cccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence               111233456799999999999999985 79999999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2e-34  Score=278.55  Aligned_cols=261  Identities=14%  Similarity=0.225  Sum_probs=209.6

Q ss_pred             ceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ..+|.+.|++|+|+|+ +++|+||+.|++|+||++......                  .......+.+|.         
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------------~~~~~~~~~~h~---------  430 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA------------------YGVAQRRLTGHS---------  430 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC------------------SCEEEEEEECCS---------
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc------------------cccccceecCCC---------
Confidence            4579999999999987 579999999999999998765321                  112345678888         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|.+++|+|+  +.+|++|+.|++|++||+.+++....+..|..        .|.       +++|+|+++.+   
T Consensus       431 ---~~v~~v~~s~~--g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~--------~v~-------~~~~s~~~~~l---  487 (694)
T 3dm0_A          431 ---HFVEDVVLSSD--GQFALSGSWDGELRLWDLAAGVSTRRFVGHTK--------DVL-------SVAFSLDNRQI---  487 (694)
T ss_dssp             ---SCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------CEE-------EEEECTTSSCE---
T ss_pred             ---CcEEEEEECCC--CCEEEEEeCCCcEEEEECCCCcceeEEeCCCC--------CEE-------EEEEeCCCCEE---
Confidence               77999999754  88999999999999999999988777666532        354       78999999988   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC--CEEEEe-cCCeEEEEeCCCCCc
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                               ++++.|+.|++|| .......   . ......+|...|.+++|+|++  ..|+++ .|++|++||++.. +
T Consensus       488 ---------~s~s~D~~i~iwd-~~~~~~~---~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~  552 (694)
T 3dm0_A          488 ---------VSASRDRTIKLWN-TLGECKY---T-ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-K  552 (694)
T ss_dssp             ---------EEEETTSCEEEEC-TTSCEEE---E-ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-C
T ss_pred             ---------EEEeCCCEEEEEE-CCCCcce---e-eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-c
Confidence                     9999999999999 4221110   0 001125788899999999987  578888 8999999999843 3


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      ....       +.+|...|++++|+|++ ++|++|+.|+.|++||+++++.+    ..+..+             ..|.+
T Consensus       553 ~~~~-------~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~~-------------~~v~~  607 (694)
T 3dm0_A          553 LRST-------LAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKL----YSLEAN-------------SVIHA  607 (694)
T ss_dssp             EEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEE----ECCBCS-------------SCEEE
T ss_pred             EEEE-------EcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceE----EEecCC-------------CcEEE
Confidence            4332       67899999999999999 99999999999999999998654    444433             57999


Q ss_pred             EEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeec
Q 015363          347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       347 ~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      ++|+|++.+|++++++.|++||+++ +..+..+..+
T Consensus       608 ~~~sp~~~~l~~~~~~~i~iwd~~~-~~~~~~~~~~  642 (694)
T 3dm0_A          608 LCFSPNRYWLCAATEHGIKIWDLES-KSIVEDLKVD  642 (694)
T ss_dssp             EEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCC
T ss_pred             EEEcCCCcEEEEEcCCCEEEEECCC-CCChhhhccc
Confidence            9999999999999888899999997 6777766543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-35  Score=255.89  Aligned_cols=257  Identities=12%  Similarity=0.200  Sum_probs=184.0

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .|.+.|++++|+|++++||+|+.|++|+||+.......                ....+....+.+|.            
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~----------------~~~~~~~~~~~~h~------------  107 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR----------------TFEMDLLAIIEGHE------------  107 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-----------------------CCCEEEEEEC---------------
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc----------------cccceeEEEEcCCC------------
Confidence            39999999999999999999999999999998643210                01223456678888            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC----cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK----KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      ..|.+++|+|+  +.+|++++.|++|++||+...    ++...+..+.        ..+.       ++.|+|++..+  
T Consensus       108 ~~V~~v~~sp~--g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~--------~~v~-------~v~~~p~~~~l--  168 (330)
T 2hes_X          108 NEVKGVAWSND--GYYLATCSRDKSVWIWETDESGEEYECISVLQEHS--------QDVK-------HVIWHPSEALL--  168 (330)
T ss_dssp             -CEEEEEECTT--SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS--------SCEE-------EEEECSSSSEE--
T ss_pred             CcEEEEEECCC--CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC--------CceE-------EEEECCCCCEE--
Confidence            77999999755  889999999999999999532    3344444332        2344       78999999988  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC--CCEEEEe-cCCeEEEEeCCCCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                ++++.|+.|++|+ .....    ..+...+ .+|...|.+++|+|+  +..|+++ .|++|++||++...
T Consensus       169 ----------~s~s~D~~i~iW~-~~~~~----~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~  232 (330)
T 2hes_X          169 ----------ASSSYDDTVRIWK-DYDDD----WECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD  232 (330)
T ss_dssp             ----------EEEETTSCEEEEE-EETTE----EEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred             ----------EEEcCCCeEEEEE-CCCCC----eeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence                      9999999999999 43321    1334444 789999999999999  6789998 99999999997432


Q ss_pred             c----eeeEeecCCCcccC-CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          266 Q----SFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       266 ~----~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      .    .....    ..+.. |...|++++|++++  +|++++.|+.|++||..++... .....+.+|            
T Consensus       233 ~~~~~~~~~~----~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~h------------  293 (330)
T 2hes_X          233 EDDQQEWVCE----AILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWK-VFAKRALCH------------  293 (330)
T ss_dssp             TTSCEEEEEE----EECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEE-EEEEESCTT------------
T ss_pred             ccccceeEEe----eecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceE-EEecccccc------------
Confidence            1    00110    11333 88999999999765  7999999999999999876311 000112233            


Q ss_pred             cc-eeEEEEEcc--CCCEEEEeC-CCeEEEEECCC
Q 015363          341 IA-SISDIKFAR--NGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       341 ~~-~i~~~~~sp--dg~~l~s~~-d~~v~~wd~~~  371 (408)
                      .. .|.+++|+|  ++++|++|+ |++|++||++.
T Consensus       294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            44 799999999  789999985 79999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.3e-34  Score=275.40  Aligned_cols=255  Identities=15%  Similarity=0.184  Sum_probs=198.6

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..+.+.+.+++|+|+|++||+++ ++.|+||++.++..                       ...+.+|.           
T Consensus        15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~-----------------------~~~~~~h~-----------   59 (611)
T 1nr0_A           15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-----------------------TEIYTEHS-----------   59 (611)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC-----------------------CEEECCCS-----------
T ss_pred             CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCccc-----------------------CeEecCCC-----------
Confidence            35678899999999999999997 56999999876542                       35688998           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE--EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                       ..|++++|+|+  |++||+|+.|++|+|||+.+++.  ...+..+        .+.|.       .++|+|+++.+   
T Consensus        60 -~~v~~~~~spd--g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~--------~~~v~-------~v~fs~dg~~l---  118 (611)
T 1nr0_A           60 -HQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQTTHILKTTIPVF--------SGPVK-------DISWDSESKRI---  118 (611)
T ss_dssp             -SCEEEEEECTT--SSEEEEEETTSEEEEEESSSTTCCEEEEEECS--------SSCEE-------EEEECTTSCEE---
T ss_pred             -CceEEEEECCC--CcEEEEEeCCCCEEEeECCCCcceeeEeeccc--------CCceE-------EEEECCCCCEE---
Confidence             77999999755  89999999999999999975543  3333333        23455       79999999987   


Q ss_pred             cccccCccccCCCCC----ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCC
Q 015363          190 FGCASNDSSFPPGGV----SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEI  263 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~  263 (408)
                               ++++.+    +.|++|| ..        .+... +.+|...|++++|+|++. .|+++ .|++|++||...
T Consensus       119 ---------~~~~~~~~~~~~v~~wd-~~--------~~~~~-l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~  179 (611)
T 1nr0_A          119 ---------AAVGEGRERFGHVFLFD-TG--------TSNGN-LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP  179 (611)
T ss_dssp             ---------EEEECCSSCSEEEEETT-TC--------CBCBC-CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred             ---------EEEECCCCceeEEEEee-CC--------CCcce-ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC
Confidence                     655543    5889888 21        12233 378999999999999987 58888 999999999873


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                       .+....       +.+|...|++++|+|++ ++|++++.|++|++||+.+++..    ..+...     .....+|...
T Consensus       180 -~~~~~~-------l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~----~~~~~~-----~~~~~~h~~~  241 (611)
T 1nr0_A          180 -FKFKST-------FGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKT----GVFEDD-----SLKNVAHSGS  241 (611)
T ss_dssp             -BEEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EECBCT-----TSSSCSSSSC
T ss_pred             -CeEeee-------eccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEe----eeeccc-----cccccccCCC
Confidence             344333       67899999999999999 99999999999999999988653    333210     0011256789


Q ss_pred             eEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363          344 ISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       344 i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                      |.+++|+|||++|++++ |++|++||+++ +++++++.
T Consensus       242 V~~v~~spdg~~l~s~s~D~~v~lWd~~~-~~~~~~~~  278 (611)
T 1nr0_A          242 VFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIP  278 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEeCCC-Cceeeeec
Confidence            99999999999999985 79999999987 56655543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=252.50  Aligned_cols=276  Identities=13%  Similarity=0.141  Sum_probs=221.7

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|.+.|++++|+|++++|++|+.||.|+|||+.+++                       .+..+.+|.         
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------------------~~~~~~~h~---------   74 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----------------------RLGTLDGHT---------   74 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----------------------EEEEECCCS---------
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----------------------hhhhhhhcC---------
Confidence            346799999999999999999999999999999987665                       346678888         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|.+++|+|  ++.+|++++.|+.|++||+.+++....+...         ..+.       .+.|+|+++.+   
T Consensus        75 ---~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~v~-------~~~~~~~~~~l---  130 (369)
T 3zwl_B           75 ---GTIWSIDVDC--FTKYCVTGSADYSIKLWDVSNGQCVATWKSP---------VPVK-------RVEFSPCGNYF---  130 (369)
T ss_dssp             ---SCEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEEEEEECS---------SCEE-------EEEECTTSSEE---
T ss_pred             ---CcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEeecC---------CCeE-------EEEEccCCCEE---
Confidence               7799999975  4889999999999999999999887776632         2344       78999999987   


Q ss_pred             cccccCccccCCCCC-----ceeeeceeeecccccc-----ccccceeecccccc--ceEEEEeCCCCCEEEEe-cCCeE
Q 015363          190 FGCASNDSSFPPGGV-----SSLRLPVVVTSQETNL-----VAGCRRIYAHAHDY--HINSISNNSDGETFISA-DDLRI  256 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~-~d~~i  256 (408)
                               ++++.+     +.|.+|+ +.......     .......+ ..|..  .+.+++|+|++++|+++ .|+.|
T Consensus       131 ---------~~~~~~~~~~~g~i~~~d-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  199 (369)
T 3zwl_B          131 ---------LAILDNVMKNPGSINIYE-IERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKI  199 (369)
T ss_dssp             ---------EEEECCBTTBCCEEEEEE-EEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEE
T ss_pred             ---------EEecCCccCCCCEEEEEE-ecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEE
Confidence                     777777     9999999 54432211     11122222 44544  89999999999999999 99999


Q ss_pred             EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccc
Q 015363          257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF  336 (408)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  336 (408)
                      ++||++........       +..|...|.+++|+|++ .+|++++.|+.|++||+++++..    ..+..         
T Consensus       200 ~i~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~----~~~~~---------  258 (369)
T 3zwl_B          200 SKYDVSNNYEYVDS-------IDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVL----KKYET---------  258 (369)
T ss_dssp             EEEETTTTTEEEEE-------EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEEC---------
T ss_pred             EEEECCCCcEeEEE-------EecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCcee----eeecC---------
Confidence            99999964555543       56688999999999999 99999999999999999988654    44442         


Q ss_pred             cccccceeEEEEEccCCCEEEEeC-CC--------------eEEEEECCCCCCceeeeeecccccceEEecCCCeee
Q 015363          337 FTEIIASISDIKFARNGRHILSRD-YM--------------TLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM  398 (408)
Q Consensus       337 ~~~h~~~i~~~~~spdg~~l~s~~-d~--------------~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (408)
                          ...+..++|+|++++|++++ ++              .+++||+.+ ++++..+.+|......+....++..+
T Consensus       259 ----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l  330 (369)
T 3zwl_B          259 ----DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHFGPLNTVAISPQGTSY  330 (369)
T ss_dssp             ----SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ----CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-CcchhheecccCcEEEEEECCCCCEE
Confidence                26799999999999999984 55              899999998 79999999998887766654455543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-34  Score=258.94  Aligned_cols=261  Identities=15%  Similarity=0.259  Sum_probs=203.3

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++|+|++++||+|+.||.|+||++....                     .+....+.+|.          
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---------------------~~~~~~~~~h~----------   55 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE----------   55 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---------------------EEEEEEECCCS----------
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc---------------------ceeeeEecCCC----------
Confidence            45799999999999999999999999999999987432                     22456788888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccC--CCeeec
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN--GGCGER  188 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~l~~  188 (408)
                        ..|++++|+|+.++.+|++++.|+.|++||+.+++.........+      ...+.       +++|+|+  +..+  
T Consensus        56 --~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~v~-------~~~~~~~~~~~~l--  118 (379)
T 3jrp_A           56 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH------SASVN-------SVQWAPHEYGPLL--  118 (379)
T ss_dssp             --SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCC------SSCEE-------EEEECCGGGCSEE--
T ss_pred             --CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCC------CcceE-------EEEeCCCCCCCEE--
Confidence              779999998665578999999999999999999874333333221      22344       7899999  8887  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-------------CCCEEEEe-cCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-------------DGETFISA-DDL  254 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-------------~~~~l~~~-~d~  254 (408)
                                ++++.++.|++|| +......    .... ...|...|.+++|+|             ++.+|+++ .|+
T Consensus       119 ----------~~~~~d~~i~v~d-~~~~~~~----~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  182 (379)
T 3jrp_A          119 ----------LVASSDGKVSVVE-FKENGTT----SPII-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN  182 (379)
T ss_dssp             ----------EEEETTSEEEEEE-CCTTSCC----CEEE-EECCTTCEEEEEECCCC----------CTTCEEEEEETTS
T ss_pred             ----------EEecCCCcEEEEe-cCCCCce----eeEE-ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC
Confidence                      9999999999999 5443211    1112 367889999999999             68999999 899


Q ss_pred             eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC---CCceEEEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363          255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  331 (408)
Q Consensus       255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  331 (408)
                      .|++||++.........    ..+.+|...|.+++|+|+   + .+|++++.||.|++||++++..... ...+.     
T Consensus       183 ~i~i~d~~~~~~~~~~~----~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~-----  251 (379)
T 3jrp_A          183 LVKIWKYNSDAQTYVLE----STLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWK-KTLLK-----  251 (379)
T ss_dssp             CEEEEEEETTTTEEEEE----EEECCCSSCEEEEEECCCCSSS-EEEEEEETTSCEEEEEESSTTSCCE-EEESS-----
T ss_pred             eEEEEEecCCCcceeeE----EEEecccCcEeEEEECCCCCCC-CeEEEEeCCCEEEEEeCCCCCccce-eeeec-----
Confidence            99999998655433222    126789999999999999   7 9999999999999999998642100 01111     


Q ss_pred             CCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          332 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                           ...|...|.+++|+|+|++|++++ |+.|++|+++.
T Consensus       252 -----~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          252 -----EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             -----SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             -----cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence                 122457899999999999999884 79999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.5e-34  Score=254.26  Aligned_cols=267  Identities=10%  Similarity=0.146  Sum_probs=193.8

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|...|++++|+|++.+|++|+.|++|+|||+.+++                       .+..+.+|.          
T Consensus        72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~-----------------------~~~~~~~h~----------  118 (343)
T 2xzm_R           72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT-----------------------TYKRFVGHQ----------  118 (343)
T ss_dssp             ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC-----------------------EEEEEECCC----------
T ss_pred             hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEcCCC----------
Confidence            45799999999999999999999999999999988765                       346788888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|.+++|+|+  +.+|++++.|++|++||+.............+      ...+.       ++.|+|++.....  
T Consensus       119 --~~v~~v~~sp~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~------~~~v~-------~~~~~~~~~~~~~--  179 (343)
T 2xzm_R          119 --SEVYSVAFSPD--NRQILSAGAEREIKLWNILGECKFSSAEKENH------SDWVS-------CVRYSPIMKSANK--  179 (343)
T ss_dssp             --SCEEEEEECSS--TTEEEEEETTSCEEEEESSSCEEEECCTTTSC------SSCEE-------EEEECCCCCSCSC--
T ss_pred             --CcEEEEEECCC--CCEEEEEcCCCEEEEEeccCCceeeeecccCC------Cceee-------eeeeccccccccc--
Confidence              77999999765  88999999999999999985433222211111      22343       6788888742211  


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                      ......++++++.|+.|++|| ..       ...... +.+|...|++++|+|++++|++| .|+.|++||+........
T Consensus       180 ~~~~~~~l~s~~~d~~i~iwd-~~-------~~~~~~-~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~  250 (343)
T 2xzm_R          180 VQPFAPYFASVGWDGRLKVWN-TN-------FQIRYT-FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR  250 (343)
T ss_dssp             CCSSCCEEEEEETTSEEEEEE-TT-------TEEEEE-EECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred             cCCCCCEEEEEcCCCEEEEEc-CC-------CceeEE-EcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence            111123458999999999999 32       222333 37899999999999999999999 999999999964444333


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      .       + .+...|.+++|+|++ .+++++ .|+.|++||+.+++...  +..+..+.. .......+|...|.+++|
T Consensus       251 ~-------~-~~~~~v~~v~~sp~~-~~la~~-~d~~v~iw~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~v~~~~~  317 (343)
T 2xzm_R          251 E-------F-DAGSTINQIAFNPKL-QWVAVG-TDQGVKIFNLMTQSKAP--VCTIEAEPI-TKAEGQKGKNPQCTSLAW  317 (343)
T ss_dssp             E-------E-ECSSCEEEEEECSSS-CEEEEE-ESSCEEEEESSSCCSCS--EEECCCCSG-GGBTTBCCSCCCEEEEEE
T ss_pred             e-------e-cCCCcEEEEEECCCC-CEEEEE-CCCCEEEEEeCCCCCCc--eEEeecCcc-hhhhhhcCCCCceEEEEE
Confidence            2       1 234569999999999 777654 58889999998765321  012221100 001112356788999999


Q ss_pred             ccCCCEEEEeC-CCeEEEEECCC
Q 015363          350 ARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      +|+|++|++|+ |+.|++|++.+
T Consensus       318 sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          318 NALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             CSSSCCEEEEETTSEEEEEEEEE
T ss_pred             CCCCCeEEEecCCceEEEEEEEc
Confidence            99999999985 79999999865

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.8e-34  Score=254.84  Aligned_cols=251  Identities=11%  Similarity=0.139  Sum_probs=203.6

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .|.++|++++|+|++++||+|+.||.|+||++.+++                     ++....+.+|.            
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~---------------------~~~~~~~~~h~------------   52 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK---------------------WVQVHELKEHN------------   52 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE---------------------EEEEEEEECCS------------
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc---------------------EEeeeeecCCC------------
Confidence            478999999999999999999999999999988663                     11356677888            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..|.+++|+|+  +.+|++++.|+.|++||+.+++.........+      ...+.       ++.|+|+++.+      
T Consensus        53 ~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~~~v~-------~~~~~~~~~~l------  111 (372)
T 1k8k_C           53 GQVTGVDWAPD--SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI------NRAAR-------CVRWAPNEKKF------  111 (372)
T ss_dssp             SCEEEEEEETT--TTEEEEEETTSCEEEEEEETTEEEEEEECCCC------SSCEE-------EEEECTTSSEE------
T ss_pred             CcccEEEEeCC--CCEEEEEcCCCeEEEEECCCCeeeeeEEeecC------CCcee-------EEEECCCCCEE------
Confidence            77999999764  78999999999999999998876655443222      22344       78999999987      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC--------
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI--------  263 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~--------  263 (408)
                            ++++.++.|++|+ +.....   ......+...|...|.+++|+|++++|+++ .|+.|++||++.        
T Consensus       112 ------~~~~~d~~v~i~d-~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  181 (372)
T 1k8k_C          112 ------AVGSGSRVISICY-FEQEND---WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA  181 (372)
T ss_dssp             ------EEEETTSSEEEEE-EETTTT---EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred             ------EEEeCCCEEEEEE-ecCCCc---ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccc
Confidence                  9999999999999 544321   111222236788899999999999999999 899999999742        


Q ss_pred             ---------CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCc
Q 015363          264 ---------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  334 (408)
Q Consensus       264 ---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  334 (408)
                               .......       +..|...|.+++|+|++ .+|++++.|+.|++||+++++.+    ..+..|      
T Consensus       182 ~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~------  243 (372)
T 1k8k_C          182 PTPWGSKMPFGELMFE-------SSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAV----ATLASE------  243 (372)
T ss_dssp             CBTTBSCCCTTCEEEE-------CCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEE----EEEECS------
T ss_pred             ccccccccchhhheEe-------cCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcee----EEEccC------
Confidence                     2223322       56789999999999999 89999999999999999988654    555555      


Q ss_pred             cccccccceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363          335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       335 ~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~  371 (408)
                            ...|.+++|+|++++|++|.|+.|++|+++.
T Consensus       244 ------~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          244 ------TLPLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             ------SCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             ------CCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence                  4689999999999999999889999999976

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.6e-34  Score=270.02  Aligned_cols=273  Identities=18%  Similarity=0.295  Sum_probs=218.9

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|.+.|.+++|+|++++|++++.||.|++|+..+..                        +..+.+|.          
T Consensus       299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~------------------------~~~~~~~~----------  344 (577)
T 2ymu_A          299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH------------------------LQTLTGHS----------  344 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE------------------------EEEECCCS----------
T ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe------------------------eEEEeCCC----------
Confidence            34689999999999999999999999999999976543                        34567777          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|.+++|+|+  ++++++++.|+.|++|+.. ++....+..+.        ..+.       +++|+|+++.+    
T Consensus       345 --~~v~~~~~s~~--g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~--------~~v~-------~~~~s~dg~~l----  400 (577)
T 2ymu_A          345 --SSVWGVAFSPD--GQTIASASDDKTVKLWNRN-GQLLQTLTGHS--------SSVR-------GVAFSPDGQTI----  400 (577)
T ss_dssp             --SCEEEEEECTT--SSEEEEEETTSEEEEEETT-CCEEEEEECCS--------SCEE-------EEEECTTSSCE----
T ss_pred             --CCEEEEEECCC--CCEEEEEeCCCEEEEEcCC-CCEEEEecCCC--------CCeE-------EEEECCCCCEE----
Confidence              77999999654  8899999999999999964 44555444432        2344       68999999988    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              ++++.|+.|++|+ ..       .+....+ .+|...|++++|+|++++|+++ .|+.|++||.. . +...
T Consensus       401 --------~~~~~d~~v~~~~-~~-------~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~-~~~~  461 (577)
T 2ymu_A          401 --------ASASDDKTVKLWN-RN-------GQLLQTL-TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-G-QLLQ  461 (577)
T ss_dssp             --------EEEETTSEEEEEC-TT-------CCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-S-CEEE
T ss_pred             --------EEEeCCCEEEEEe-CC-------CCEEEEe-cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-C-CEEE
Confidence                    9999999999999 32       2333443 7899999999999999999999 99999999975 3 3333


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      .       +.+|...|++++|+|++ ++|++++.|+.|++||.. ++.+    +.+.+|            ...|++++|
T Consensus       462 ~-------~~~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~-~~~~----~~~~~h------------~~~v~~l~~  516 (577)
T 2ymu_A          462 T-------LTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQLL----QTLTGH------------SSSVRGVAF  516 (577)
T ss_dssp             E-------EECCSSCEEEEEECTTS-CEEEEEETTSEEEEEETT-SCEE----EEEECC------------SSCEEEEEE
T ss_pred             E-------EcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC-CCEE----EEEeCC------------CCCEEEEEE
Confidence            2       56789999999999999 999999999999999964 4333    555555            578999999


Q ss_pred             ccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeee-ee--eceeeec
Q 015363          350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM-GL--DNIHTLY  407 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--d~~~~~~  407 (408)
                      +|||++|++++ |+.|++||..  +++++++.+|......+....++..+ ..  |...++|
T Consensus       517 s~dg~~l~s~~~dg~v~lwd~~--~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          517 SPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             CTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             cCCCCEEEEEECcCEEEEEeCC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence            99999999985 7999999973  68999999999988777765565543 33  4444444

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7e-34  Score=251.67  Aligned_cols=283  Identities=14%  Similarity=0.179  Sum_probs=205.7

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      .+|.+.|++++|+|++++||+|+.||.|+||++.++..                   ..+....+.+|.           
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~~~~~-----------   57 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------------------NWELSDSWRAHD-----------   57 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------------------CEEEEEEEECCS-----------
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------------------cceecceeccCC-----------
Confidence            57999999999999999999999999999999986542                   233456678888           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc---------EEEEeccCCCCcccCCCCCeEeecCCceeeEEccC
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK---------VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN  182 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  182 (408)
                       ..|++++|+|..++.+|++++.|+.|++||+.+++         ....+..+        .+.+.       .+.|+|+
T Consensus        58 -~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--------~~~v~-------~~~~~~~  121 (351)
T 3f3f_A           58 -SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS--------KGSLY-------SVKFAPA  121 (351)
T ss_dssp             -SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCC--------SSCEE-------EEEECCG
T ss_pred             -CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeeccc--------CCcee-------EEEEcCC
Confidence             77999999874457899999999999999998763         23333332        22344       7899999


Q ss_pred             --CCeeecccccccCccccCCCCCceeeeceeeeccccccccc------cceeeccccccceEEEEeCCC---CCEEEEe
Q 015363          183 --GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG------CRRIYAHAHDYHINSISNNSD---GETFISA  251 (408)
Q Consensus       183 --~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~i~~~~~---~~~l~~~  251 (408)
                        +..+            ++++.|+.|++|| +..........      ........|...+.+++|+|+   +..++++
T Consensus       122 ~~~~~l------------~~~~~dg~v~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~  188 (351)
T 3f3f_A          122 HLGLKL------------ACLGNDGILRLYD-ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS  188 (351)
T ss_dssp             GGCSEE------------EEEETTCEEEEEE-CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE
T ss_pred             CCCcEE------------EEecCCCcEEEec-CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe
Confidence              8887            9999999999999 55433221111      011111367788999999997   8999998


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCC---ceEEEEeCCCeEEEEEcCCCceecccccccc-
Q 015363          252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---NMLAYSSSKGSIRLIDMRQSALCDTHSKLFE-  326 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-  326 (408)
                       .++.+.+|+... .......     .+.+|...|++++|+|++.   .+|++++.||.|++||++.+........... 
T Consensus       189 ~~~~~~~~~~~~~-~~~~~~~-----~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  262 (351)
T 3f3f_A          189 ALEQAIIYQRGKD-GKLHVAA-----KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTN  262 (351)
T ss_dssp             ETTEEEEEEECTT-SCEEEEE-----ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------
T ss_pred             cCCCcEEEEccCC-Cceeeee-----ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccc
Confidence             899997777763 3332221     2678999999999999973   6899999999999999987532100000000 


Q ss_pred             -----------------------------cccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCce
Q 015363          327 -----------------------------EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPV  376 (408)
Q Consensus       327 -----------------------------~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~  376 (408)
                                                   ..........+.+|...|.+++|+|++++|++++ |+.|++||+.+ ++.+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~-~~~~  341 (351)
T 3f3f_A          263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY-SNEF  341 (351)
T ss_dssp             ----------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT-TSCE
T ss_pred             eeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc-Ccch
Confidence                                         0000012233456788999999999999999985 79999999997 4555


Q ss_pred             eeee
Q 015363          377 ATFQ  380 (408)
Q Consensus       377 ~~~~  380 (408)
                      +.+.
T Consensus       342 ~~~~  345 (351)
T 3f3f_A          342 KCMS  345 (351)
T ss_dssp             EEEE
T ss_pred             hhee
Confidence            4443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.9e-34  Score=255.98  Aligned_cols=291  Identities=11%  Similarity=0.097  Sum_probs=212.4

Q ss_pred             eeeccceEEEEECCCC-CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           32 VQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~-~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..|.+.|++++|+|++ ++||+|+.||.|+|||+.++...                     ......+|.          
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~h~----------  118 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---------------------SFIQGMGPG----------  118 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---------------------EEECCCSTT----------
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---------------------eeeecCCcC----------
Confidence            4689999999999998 99999999999999999866531                     112234677          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|.+++|+|. ++.+|++++.|+.|++||+.+............      ...+.       +++|+|+++.+    
T Consensus       119 --~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~v~-------~~~~~~~~~~l----  178 (383)
T 3ei3_B          119 --DAITGMKFNQF-NTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSW------DYWYC-------CVDVSVSRQML----  178 (383)
T ss_dssp             --CBEEEEEEETT-EEEEEEEEETTTEEEEEETTSCEEEEEECCCCS------SCCEE-------EEEEETTTTEE----
T ss_pred             --CceeEEEeCCC-CCCEEEEEeCCCEEEEEECCCCceEEEeccCCC------CCCeE-------EEEECCCCCEE----
Confidence              77999999862 367999999999999999997544333322211      23344       78999999988    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCC---
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISN---  265 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~---  265 (408)
                              ++++.++.|++|| +.       ..+...+ ..|...|.+++|+|+++ +|+++ .|+.|++||++...   
T Consensus       179 --------~~~~~d~~i~i~d-~~-------~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  241 (383)
T 3ei3_B          179 --------ATGDSTGRLLLLG-LD-------GHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN  241 (383)
T ss_dssp             --------EEEETTSEEEEEE-TT-------SCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT
T ss_pred             --------EEECCCCCEEEEE-CC-------CCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc
Confidence                    9999999999999 42       2334443 78999999999999998 88988 89999999999532   


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcC-CCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC------Cccccc
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG------TRSFFT  338 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------~~~~~~  338 (408)
                      .....        .+|...|++++|+| ++ .+|++++.|+.|++||+++++..    ..+.+|....      ....+.
T Consensus       242 ~~~~~--------~~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  308 (383)
T 3ei3_B          242 SYIAE--------MPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKP----DQIIIHPHRQFQHLTPIKATWH  308 (383)
T ss_dssp             CEEEE--------EECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSC----SEEEECCBCCCTTSCCCCCEEC
T ss_pred             ceEEE--------ecCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccc----cccccccccccccccceEEecc
Confidence            23322        25889999999999 98 99999999999999999988654    4444442110      000010


Q ss_pred             cccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeec--ccccceEEecCCCeee--eeeceeeec
Q 015363          339 EIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVH--EHLRPKVMHSSKNYFM--GLDNIHTLY  407 (408)
Q Consensus       339 ~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~d~~~~~~  407 (408)
                      . ...+..++|+|++++  ++ .|+.|++||+.+ ++++..+.+|  ......+....++..+  +-|....+|
T Consensus       309 p-~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~-~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw  378 (383)
T 3ei3_B          309 P-MYDLIVAGRYPDDQL--LLNDKRTIDIYDANS-GGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIW  378 (383)
T ss_dssp             S-SSSEEEEECBCCTTT--CTTCCCCEEEEETTT-CCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEE
T ss_pred             C-CCCceEEEecCCccc--ccCCCCeEEEEecCC-CceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEE
Confidence            0 134556777888877  55 479999999998 7999999884  4445554433444443  224444444

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-34  Score=259.67  Aligned_cols=252  Identities=11%  Similarity=0.104  Sum_probs=188.5

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      |.++|++++|+|++++||+|+.||.|+||++.++.                     ++....+.+|.            .
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~---------------------~~~~~~~~~h~------------~   56 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG---------------------WKHARTFSDHD------------K   56 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE---------------------EEECCCBCCCS------------S
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc---------------------eEEEEEEecCC------------c
Confidence            56789999999999999999999999999998652                     11345677888            7


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc---EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK---VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      .|.+++|+|+  +++|++++.|++|++||+.+++   ....+..+        .+.+.       ++.|+|+++.+    
T Consensus        57 ~v~~~~~s~~--~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~l----  115 (377)
T 3dwl_C           57 IVTCVDWAPK--SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL--------NRAAT-------FVRWSPNEDKF----  115 (377)
T ss_dssp             CEEEEEECTT--TCCEEEEETTSSEEEC------CCCCEEECCCC--------SSCEE-------EEECCTTSSCC----
T ss_pred             eEEEEEEeCC--CCEEEEEeCCCeEEEEEcCCCCceeeeeEeccc--------CCceE-------EEEECCCCCEE----
Confidence            7999999755  7899999999999999999876   22222222        22344       78999999987    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccc-cccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc--
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ--  266 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~--  266 (408)
                              ++++.|+.|++|| +.....   ....+.+ .. |...|++++|+|++++|+++ .|+.|++||++....  
T Consensus       116 --------~~~~~d~~i~iwd-~~~~~~---~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  182 (377)
T 3dwl_C          116 --------AVGSGARVISVCY-FEQEND---WWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDA  182 (377)
T ss_dssp             --------EEEESSSCEEECC-C--------CCCCEEE-CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-
T ss_pred             --------EEEecCCeEEEEE-ECCccc---ceeeeEe-ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCC
Confidence                    9999999999999 543221   1123333 44 89999999999999999999 999999999863220  


Q ss_pred             ------------eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCc
Q 015363          267 ------------SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  334 (408)
Q Consensus       267 ------------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  334 (408)
                                  .....    ..+ .|...|++++|+|++ ++|++++.|+.|++||++++......+..+.+|      
T Consensus       183 ~~~~~~~~~~~~~~~~~----~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------  250 (377)
T 3dwl_C          183 KPEASVWGSRLPFNTVC----AEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLS------  250 (377)
T ss_dssp             CCCSCSSCSCCCEEEEE----ECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECS------
T ss_pred             Cccccccccccchhhhh----hcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCC------
Confidence                        01111    124 789999999999999 899999999999999999886421112455555      


Q ss_pred             cccccccceeEEEEEccCCCEEEEeCCCeEEEEECC
Q 015363          335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN  370 (408)
Q Consensus       335 ~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~  370 (408)
                            ...|.+++|+|++++|++|+++.+.+|+..
T Consensus       251 ------~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          251 ------QLPLRSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             ------SSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             ------CCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence                  578999999999999999987666688776

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.4e-33  Score=244.75  Aligned_cols=244  Identities=12%  Similarity=0.214  Sum_probs=195.2

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|...|.+++|+|++++|++|+.||.|++||+.+++                       .+..+.+|.          
T Consensus        61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------------------~~~~~~~~~----------  107 (312)
T 4ery_A           61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-----------------------CLKTLKGHS----------  107 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------EEEEEECCS----------
T ss_pred             hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc-----------------------EEEEEcCCC----------
Confidence            34689999999999999999999999999999988664                       345678888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|.+++|+|+  +.+|++++.|+.|++||+++++....+..+..        .+.       .+.|+|+++.+    
T Consensus       108 --~~v~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------~v~-------~~~~~~~~~~l----  164 (312)
T 4ery_A          108 --NYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------PVS-------AVHFNRDGSLI----  164 (312)
T ss_dssp             --SCEEEEEECSS--SSEEEEEETTSCEEEEETTTCCEEEEECCCSS--------CEE-------EEEECTTSSEE----
T ss_pred             --CCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCEEEEEecCCCC--------cEE-------EEEEcCCCCEE----
Confidence              77999999765  78999999999999999999887776655432        344       68999999987    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              ++++.|+.|++|| +..      .++...+...+...+..++|+|++++|+++ .|+.|++||+++. +...
T Consensus       165 --------~~~~~d~~i~~wd-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~  228 (312)
T 4ery_A          165 --------VSSSYDGLCRIWD-TAS------GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLK  228 (312)
T ss_dssp             --------EEEETTSCEEEEE-TTT------CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEE
T ss_pred             --------EEEeCCCcEEEEE-CCC------CceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEE
Confidence                    9999999999999 433      223333335566789999999999999999 8999999999844 4443


Q ss_pred             EeecCCCcccCCcCCe--EEEEEc-CCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          270 IVDVKPANMEDLTEVI--TSAEFH-PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v--~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      .       +.+|....  ....++ +++ .+|++|+.|+.|++||+++++.+    ..+.+|            ...|.+
T Consensus       229 ~-------~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~----~~~~~h------------~~~v~~  284 (312)
T 4ery_A          229 T-------YTGHKNEKYCIFANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIV----QKLQGH------------TDVVIS  284 (312)
T ss_dssp             E-------ECSSCCSSSCCCEEEECSSS-CEEEECCTTSCEEEEETTTCCEE----EEECCC------------SSCEEE
T ss_pred             E-------EEecCCceEEEEEEEEeCCC-cEEEEECCCCEEEEEECCCchhh----hhhhcc------------CCcEEE
Confidence            3       34444332  223444 556 89999999999999999988654    566666            478999


Q ss_pred             EEEccCCCEEEEeC---CCeEEEEECC
Q 015363          347 IKFARNGRHILSRD---YMTLKLWDIN  370 (408)
Q Consensus       347 ~~~spdg~~l~s~~---d~~v~~wd~~  370 (408)
                      ++|+|++.+|++++   |++|++|+.+
T Consensus       285 ~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          285 TACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999873   7999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.4e-32  Score=242.36  Aligned_cols=270  Identities=13%  Similarity=0.228  Sum_probs=205.1

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec--cCCcccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ--SHEPEFDYLKS  108 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~h~~~~~~~~~  108 (408)
                      ...|.+.|++++|+|++++|++++ ||.|++|++.++...                    .....+.  +|.        
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~--------------------~~~~~~~~~~~~--------   97 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK--------------------SPVSQLDCLNRD--------   97 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC--------------------SCSEEEECSCTT--------
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce--------------------eeeecccccCCC--------
Confidence            357999999999999999999999 999999999876431                    0112222  565        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          ..|.+++|+|+  +.+|++++.|+.|++||+.+++.........+      ...+.       .+.|+|+++.+  
T Consensus        98 ----~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------~~~i~-------~~~~~~~~~~l--  156 (337)
T 1gxr_A           98 ----NYIRSCKLLPD--GCTLIVGGEASTLSIWDLAAPTPRIKAELTSS------APACY-------ALAISPDSKVC--  156 (337)
T ss_dssp             ----SBEEEEEECTT--SSEEEEEESSSEEEEEECCCC--EEEEEEECS------SSCEE-------EEEECTTSSEE--
T ss_pred             ----CcEEEEEEcCC--CCEEEEEcCCCcEEEEECCCCCcceeeecccC------CCceE-------EEEECCCCCEE--
Confidence                77999999754  88999999999999999998873332222211      12233       68999999987  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                ++++.++.|++|| +..      .+....+ ..|...+.+++|+|++++|+++ .|+.|++||++.. ..
T Consensus       157 ----------~~~~~dg~v~~~d-~~~------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~  217 (337)
T 1gxr_A          157 ----------FSCCSDGNIAVWD-LHN------QTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-RQ  217 (337)
T ss_dssp             ----------EEEETTSCEEEEE-TTT------TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EE
T ss_pred             ----------EEEeCCCcEEEEe-CCC------Cceeeee-ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-ce
Confidence                      9999999999999 433      2233333 6788999999999999999999 9999999999944 33


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      ...        ..+...+.+++|+|++ .+|++++.|+.|++||++++..     ..+..|            ...|.++
T Consensus       218 ~~~--------~~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~------------~~~v~~~  271 (337)
T 1gxr_A          218 LQQ--------HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK-----YQLHLH------------ESCVLSL  271 (337)
T ss_dssp             EEE--------EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE-----EEECCC------------SSCEEEE
T ss_pred             Eee--------ecCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCe-----EEEcCC------------ccceeEE
Confidence            332        2356789999999999 9999999999999999998753     233334            4789999


Q ss_pred             EEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCee
Q 015363          348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYF  397 (408)
Q Consensus       348 ~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (408)
                      +|+|++++|++++ |+.|++||+.+ ++.+... .|......+....++..
T Consensus       272 ~~~~~~~~l~~~~~dg~i~~~~~~~-~~~~~~~-~~~~~v~~~~~s~~~~~  320 (337)
T 1gxr_A          272 KFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQS-KESSSVLSCDISVDDKY  320 (337)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTT-CCEEEEE-ECSSCEEEEEECTTSCE
T ss_pred             EECCCCCEEEEecCCCcEEEEECCC-CeEEEEe-cCCCcEEEEEECCCCCE
Confidence            9999999999985 79999999997 5666443 45555444443334443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.7e-33  Score=249.84  Aligned_cols=280  Identities=10%  Similarity=0.085  Sum_probs=205.2

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++|+|  ++|++|+.||.|+||++.+....                 ..+.....+.+|.          
T Consensus        12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~h~----------   62 (397)
T 1sq9_A           12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-----------------NPKDKSYSHFVHK----------   62 (397)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-----------------CGGGGEEEEECCT----------
T ss_pred             hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-----------------cCCCcceEEecCC----------
Confidence            347999999999998  79999999999999999876521                 1233456677888          


Q ss_pred             cccceeEEEEeec--CCC---cEEEEEeCCCeEEEEEcCCCcE-----EEEeccCCCCcccCCCCCeEeecCCceeeEEc
Q 015363          111 IEEKINKIRWCQS--ANS---ALYLLSTNDKTIKLWKVQEKKV-----KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM  180 (408)
Q Consensus       111 ~~~~v~~v~~~p~--~~~---~~l~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  180 (408)
                        ..|.+++|+|+  .++   .+|++++.|+.|++|++.+++.     ...+..+...   ...+.+.       ++.|+
T Consensus        63 --~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~-------~~~~~  130 (397)
T 1sq9_A           63 --SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD---MKKHSFW-------ALKWG  130 (397)
T ss_dssp             --TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT---GGGSCEE-------EEEEE
T ss_pred             --CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc---cCCCcEE-------EEEEe
Confidence              77999999865  226   7999999999999999998774     4444433100   0012344       78999


Q ss_pred             ----cCCCe-eecccccccCccccCCCCCceeeeceeeec------cccccccccceeec------cccccceEEEEeCC
Q 015363          181 ----ANGGC-GERNFGCASNDSSFPPGGVSSLRLPVVVTS------QETNLVAGCRRIYA------HAHDYHINSISNNS  243 (408)
Q Consensus       181 ----~~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~------~~~~~~v~~i~~~~  243 (408)
                          |++.. +            ++++.++.|++|| +..      ..... ..+...+.      ..|...|.+++|+|
T Consensus       131 ~~~~~~~~~~l------------~~~~~dg~i~iwd-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~  196 (397)
T 1sq9_A          131 ASNDRLLSHRL------------VATDVKGTTYIWK-FHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISE  196 (397)
T ss_dssp             CCC----CEEE------------EEEETTSCEEEEE-EESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECT
T ss_pred             eccCCCCceEE------------EEEeCCCcEEEEe-CCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECC
Confidence                99998 7            9999999999999 554      21111 00000221      34778899999999


Q ss_pred             CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccC---C---cCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcC
Q 015363          244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED---L---TEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMR  313 (408)
Q Consensus       244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~  313 (408)
                      ++ +|+++ .|+.|++||++. ......       +..   |   ...|.+++|+|++ .+|++++.|   +.|++||++
T Consensus       197 ~~-~l~~~~~dg~i~i~d~~~-~~~~~~-------~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~  266 (397)
T 1sq9_A          197 RG-LIATGFNNGTVQISELST-LRPLYN-------FESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETE  266 (397)
T ss_dssp             TS-EEEEECTTSEEEEEETTT-TEEEEE-------EECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETT
T ss_pred             Cc-eEEEEeCCCcEEEEECCC-CceeEE-------EeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECC
Confidence            99 99998 899999999994 444433       344   7   8899999999999 999999999   999999999


Q ss_pred             CCceecccccccccccCCCC-ccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363          314 QSALCDTHSKLFEEQEAPGT-RSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                      +++..    ..+.+...+.. ......|...|.+++|+|++++|++++ |+.|++||+++ ++++..+.
T Consensus       267 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~  330 (397)
T 1sq9_A          267 FGERI----GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLN  330 (397)
T ss_dssp             TCCEE----EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEE
T ss_pred             CCccc----ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceeEEEe
Confidence            88654    44544100000 000011457899999999999999985 79999999998 79999999

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.7e-33  Score=250.62  Aligned_cols=201  Identities=12%  Similarity=0.153  Sum_probs=151.8

Q ss_pred             cceeEEEEeecCCCcEEEEE--eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          113 EKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      ..+.+++|+|+  |++++++  +.|++|++||+.+++....+..+         +.|.       .++|+|+|+.+    
T Consensus       134 ~~~~~v~fSpD--g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~---------~~V~-------~v~fspdg~~l----  191 (365)
T 4h5i_A          134 DYTKLVYISRE--GTVAAIASSKVPAIMRIIDPSDLTEKFEIETR---------GEVK-------DLHFSTDGKVV----  191 (365)
T ss_dssp             CCEEEEEECTT--SSCEEEEESCSSCEEEEEETTTTEEEEEEECS---------SCCC-------EEEECTTSSEE----
T ss_pred             cCEEEEEEcCC--CCEEEEEECCCCCEEEEeECCCCcEEEEeCCC---------CceE-------EEEEccCCceE----
Confidence            55889999755  8887654  47999999999999887766532         2344       78999999987    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC----eEEEEeCCCCC
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL----RINLWNLEISN  265 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~----~i~iwd~~~~~  265 (408)
                              ++++.++.+.+|. ... .     .........|...|++++|+|+++.++++ .|+    .+++|++....
T Consensus       192 --------~s~s~~~~~~~~~-~~~-~-----~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~  256 (365)
T 4h5i_A          192 --------AYITGSSLEVIST-VTG-S-----CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN  256 (365)
T ss_dssp             --------EEECSSCEEEEET-TTC-C-----EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE
T ss_pred             --------EeccceeEEEEEe-ccC-c-----ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce
Confidence                    7777555444443 211 1     11111235788899999999999999987 555    68888887443


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccc-cccccCCCCcccccccccee
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL-FEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~i  344 (408)
                      ......    ..+.+|...|++++|+|+| ++||+|+.|++|+|||+++++.+    .. +.+|            ...|
T Consensus       257 ~~~~~~----~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~~~----~~~~~gH------------~~~V  315 (365)
T 4h5i_A          257 TSVLRS----KQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLSMS----KIFKQAH------------SFAI  315 (365)
T ss_dssp             EEEEEE----EEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEE----EEETTSS------------SSCE
T ss_pred             ecceee----eeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCcEE----EEecCcc------------cCCE
Confidence            322111    1257788999999999999 99999999999999999998654    33 3455            5889


Q ss_pred             EEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          345 SDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       345 ~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      ++++|||||++||+|+ |++|+|||+..
T Consensus       316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          316 TEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9999999999999996 79999999965

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.5e-32  Score=260.24  Aligned_cols=273  Identities=18%  Similarity=0.327  Sum_probs=218.1

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|...|++++|+|++++|++++.|+.|++|+....                        ....+.+|.          
T Consensus       258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~------------------------~~~~~~~h~----------  303 (577)
T 2ymu_A          258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ------------------------LLQTLTGHS----------  303 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------------------------EEEEECCCS----------
T ss_pred             EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------------------------EEEEEecCC----------
Confidence            3468999999999999999999999999999996432                        345678888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|.+++|+|+  +.++++++.|++|++||+....... +..+        ...+.       +++++|+++.+    
T Consensus       304 --~~v~~~~~~~~--~~~l~t~~~d~~i~~w~~~~~~~~~-~~~~--------~~~v~-------~~~~s~~g~~l----  359 (577)
T 2ymu_A          304 --SSVWGVAFSPD--GQTIASASDDKTVKLWNRNGQHLQT-LTGH--------SSSVW-------GVAFSPDGQTI----  359 (577)
T ss_dssp             --SCEEEEEECTT--SSEEEEEETTSCEEEEETTSCEEEE-ECCC--------SSCEE-------EEEECTTSSEE----
T ss_pred             --CCeEEEEECCC--CCEEEEEeCCCeEEEEeCCCCeeEE-EeCC--------CCCEE-------EEEECCCCCEE----
Confidence              77999999754  8899999999999999987665433 3332        22344       68999999998    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              ++++.++.|++|+ ..       ......+ .+|...|++++|+|++++|+++ .|+.|++||.. . +...
T Consensus       360 --------~~~~~dg~v~~~~-~~-------~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~-~~~~  420 (577)
T 2ymu_A          360 --------ASASDDKTVKLWN-RN-------GQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQ  420 (577)
T ss_dssp             --------EEEETTSEEEEEE-TT-------CCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C-CEEE
T ss_pred             --------EEEeCCCEEEEEc-CC-------CCEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEE
Confidence                    9999999999999 32       2333443 7889999999999999999999 99999999965 3 3333


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      .       +.+|...|++++|+|++ ++|++++.|+.|++||.... ..    ..+.+|            ...|.+++|
T Consensus       421 ~-------~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~~-~~----~~~~~~------------~~~v~~~~~  475 (577)
T 2ymu_A          421 T-------LTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQ-LL----QTLTGH------------SSSVRGVAF  475 (577)
T ss_dssp             E-------EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSC-EE----EEEECC------------SSCEEEEEE
T ss_pred             E-------ecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCCC-EE----EEEcCC------------CCCEEEEEE
Confidence            2       56789999999999999 99999999999999997532 32    455555            578999999


Q ss_pred             ccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee-e--eceeeec
Q 015363          350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG-L--DNIHTLY  407 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--d~~~~~~  407 (408)
                      +||+++|++++ |+.|++||..  +++++.+.+|......+....++..++ .  |...+||
T Consensus       476 spd~~~las~~~d~~i~iw~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw  535 (577)
T 2ymu_A          476 SPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW  535 (577)
T ss_dssp             CTTSCEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             cCCCCEEEEEeCCCEEEEEcCC--CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence            99999999985 7999999963  689999999998877776555555443 2  4445554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=258.35  Aligned_cols=278  Identities=13%  Similarity=0.134  Sum_probs=200.6

Q ss_pred             eeeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..|.+.|++++|+| ++++||+|+.||+|+|||+.+.... .                .++....+ +|.          
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-~----------------~~~~~~~~-~h~----------  111 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-E----------------VYSSSLTY-DCS----------  111 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-C----------------CCSCSEEE-ECS----------
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-c----------------ccceeeec-cCC----------
Confidence            46889999999999 9999999999999999998762110 0                00111122 366          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcC---CCcEEEEeccCCCC-cccC---CCCCeEeecCCceeeE--Ecc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ---EKKVKKVFDWNVHP-EKAA---GNGPIFGSHVSAIPKS--YMA  181 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~---~~~~~~~~~~~~~~-~~~~---~~~~v~~~~~~~~~~~--~~~  181 (408)
                        ..|++++|+|  ++.+|++++.|++|++||+.   +++.......+... ..+.   ....+.       ++.  +++
T Consensus       112 --~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~  180 (437)
T 3gre_A          112 --STVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV-------RMRAFVNE  180 (437)
T ss_dssp             --SCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE-------EEEEEECS
T ss_pred             --CCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce-------EEEEEEcC
Confidence              7799999975  47899999999999999995   55554443332100 0000   111222       333  556


Q ss_pred             CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccc--cccceEEEEeCCCCCEEEEe-cCCeEEE
Q 015363          182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA--HDYHINSISNNSDGETFISA-DDLRINL  258 (408)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~-~d~~i~i  258 (408)
                      ++..+            ++++.|+.|++|| +..      ..+...+ ..  |...|++++|+|++++|++| .|+.|++
T Consensus       181 ~~~~l------------~~~~~d~~i~iwd-~~~------~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i  240 (437)
T 3gre_A          181 EKSLL------------VALTNLSRVIIFD-IRT------LERLQII-ENSPRHGAVSSICIDEECCVLILGTTRGIIDI  240 (437)
T ss_dssp             SCEEE------------EEEETTSEEEEEE-TTT------CCEEEEE-ECCGGGCCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             CCCEE------------EEEeCCCeEEEEe-CCC------CeeeEEE-ccCCCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence            77766            9999999999999 433      2333443 44  78899999999999999999 9999999


Q ss_pred             EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcC----CCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCc
Q 015363          259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  334 (408)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  334 (408)
                      ||++. ......+      ...|...|++++|+|    ++ .+|++|+.|+.|++||+++++..    ..+.+|......
T Consensus       241 wd~~~-~~~~~~~------~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~  308 (437)
T 3gre_A          241 WDIRF-NVLIRSW------SFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQ----YAFINSDEQPSM  308 (437)
T ss_dssp             EETTT-TEEEEEE------BCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEE----EEEESSSSCCCG
T ss_pred             EEcCC-ccEEEEE------ecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEE----EEEEcCCCCCcc
Confidence            99994 4444432      125677899996654    56 79999999999999999988654    455544321111


Q ss_pred             c------------cccc--ccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363          335 S------------FFTE--IIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       335 ~------------~~~~--h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      .            .+.+  |...|.+++|+ ++++|++|+ |+.|++||+.+ ++.++.+.+|
T Consensus       309 ~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~  369 (437)
T 3gre_A          309 EHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE-LSSSKAVISP  369 (437)
T ss_dssp             GGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-GGGCEEEECC
T ss_pred             ceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-cccceEEecc
Confidence            1            1333  88899999999 789999986 79999999997 6888888774

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=248.62  Aligned_cols=287  Identities=14%  Similarity=0.216  Sum_probs=203.1

Q ss_pred             ceeeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...|.+.|++++|+| ++++||+|+.||.|+||++.++..........  .        .........+|.         
T Consensus        39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~---------   99 (408)
T 4a11_B           39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA--V--------CSIGRDHPDVHR---------   99 (408)
T ss_dssp             CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE--E--------EEECTTCTTCCS---------
T ss_pred             eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc--c--------ccccccccccCC---------
Confidence            346999999999999 99999999999999999998775420000000  0        000000112455         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC---Cee
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG---GCG  186 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~l  186 (408)
                         ..|.+++|+|. ++.+|++++.|+.|++||+.+++....+....         .+.       .+.+.+.+   ..+
T Consensus       100 ---~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~  159 (408)
T 4a11_B          100 ---YSVETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE---------TVY-------SHHMSPVSTKHCLV  159 (408)
T ss_dssp             ---SCEEEEEECTT-CTTCEEEEETTSEEEEEETTTTEEEEEEECSS---------CEE-------EEEECSSCSSCCEE
T ss_pred             ---CcEEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCccceeccCCC---------cee-------eeEeecCCCCCcEE
Confidence               77999999762 35699999999999999999998877665432         222       56676644   355


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEIS  264 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~  264 (408)
                                  ++++.++.|++|| +..      ..+...+ ..|...|++++|+|+++ +|+++ .|+.|++||++..
T Consensus       160 ------------~~~~~~~~v~~~d-~~~------~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~  219 (408)
T 4a11_B          160 ------------AVGTRGPKVQLCD-LKS------GSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA  219 (408)
T ss_dssp             ------------EEEESSSSEEEEE-SSS------SCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCS
T ss_pred             ------------EEEcCCCeEEEEe-CCC------cceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC
Confidence                        8999999999999 543      2233343 68889999999999998 58888 8999999999866


Q ss_pred             CceeeEeecC--------CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc--------
Q 015363          265 NQSFNIVDVK--------PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ--------  328 (408)
Q Consensus       265 ~~~~~~~~~~--------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------  328 (408)
                      ......+...        ......|...|.+++|+|++ .+|++++.|+.|++||+++++...    .+..+        
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~  294 (408)
T 4a11_B          220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTL----VNYGKVCNNSKKG  294 (408)
T ss_dssp             SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCC----CCCCCCCCCCSSC
T ss_pred             CcccccccccccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccce----ecccccccccccc
Confidence            5444432110        01235788999999999999 999999999999999999875431    11100        


Q ss_pred             ---------------------------cCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363          329 ---------------------------EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       329 ---------------------------~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                                                 ........+.+|...|.+++|+|++++|++++ ||.|++||+++ ++++....
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~  373 (408)
T 4a11_B          295 LKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL-YEPVPDDD  373 (408)
T ss_dssp             CCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------
T ss_pred             ceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC-CCccCCCC
Confidence                                       01122334567889999999999999999985 79999999997 56666554


Q ss_pred             ec
Q 015363          381 VH  382 (408)
Q Consensus       381 ~~  382 (408)
                      .+
T Consensus       374 ~~  375 (408)
T 4a11_B          374 ET  375 (408)
T ss_dssp             --
T ss_pred             ce
Confidence            43

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-33  Score=254.17  Aligned_cols=272  Identities=10%  Similarity=0.141  Sum_probs=204.0

Q ss_pred             CcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (408)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   92 (408)
                      .-..|++...-.. .......|...|++++|+|++++|++|+.||.|+||++.+...                   ..+.
T Consensus        46 ~v~iw~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------------------~~~~  105 (416)
T 2pm9_A           46 SLELWSLLAADSE-KPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------------------AINS  105 (416)
T ss_dssp             CCEEEESSSGGGC-SCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------------------CCCE
T ss_pred             eEEEEEccCCCCC-cEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------------------cccc
Confidence            4556777642111 1223457899999999999999999999999999999876321                   1124


Q ss_pred             eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc------EEEEeccCCCCcccCCCCC
Q 015363           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK------VKKVFDWNVHPEKAAGNGP  166 (408)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~  166 (408)
                      ...+.+|.            ..|++++|+|+ ++.+|++++.|+.|++||+.+++      ........     ....+.
T Consensus       106 ~~~~~~h~------------~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~  167 (416)
T 2pm9_A          106 MARFSNHS------------SSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS-----MSSVDE  167 (416)
T ss_dssp             EEECCCSS------------SCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS-----CCSSCC
T ss_pred             hhhccCCc------------cceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccc-----cCCCCC
Confidence            55677888            77999999754 25699999999999999999875      21111000     001223


Q ss_pred             eEeecCCceeeEEccC-CCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeec-----cccccceEEEE
Q 015363          167 IFGSHVSAIPKSYMAN-GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-----HAHDYHINSIS  240 (408)
Q Consensus       167 v~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~i~  240 (408)
                      +.       +++|+|+ +..+            ++++.++.|++|| +...      .+...+.     .+|...+.+++
T Consensus       168 v~-------~~~~~~~~~~~l------------~~~~~dg~v~iwd-~~~~------~~~~~~~~~~~~~~~~~~v~~~~  221 (416)
T 2pm9_A          168 VI-------SLAWNQSLAHVF------------ASAGSSNFASIWD-LKAK------KEVIHLSYTSPNSGIKQQLSVVE  221 (416)
T ss_dssp             CC-------EEEECSSCTTEE------------EEESSSSCEEEEE-TTTT------EEEEEECCCCCSSCCCCCEEEEE
T ss_pred             ee-------EEEeCCCCCcEE------------EEEcCCCCEEEEE-CCCC------CcceEEeccccccccCCceEEEE
Confidence            33       7899999 5665            8999999999999 5432      2222221     12378899999


Q ss_pred             eCCCC-CEEEEe-cCC---eEEEEeCCCCCceeeEeecCCCccc-CCcCCeEEEEEcC-CCCceEEEEeCCCeEEEEEcC
Q 015363          241 NNSDG-ETFISA-DDL---RINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       241 ~~~~~-~~l~~~-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~  313 (408)
                      |+|++ .+++++ .|+   .|++||++........       +. +|...|++++|+| ++ .+|++++.|+.|++||++
T Consensus       222 ~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~  293 (416)
T 2pm9_A          222 WHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT-------LNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPE  293 (416)
T ss_dssp             ECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC-------CCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSS
T ss_pred             ECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE-------eecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCC
Confidence            99997 688888 787   9999999965444432       55 7899999999999 77 999999999999999999


Q ss_pred             CCceecccccccccccCCCCccccccccceeEEEEEccCC-CEEEEeC-CCeEEEEECCCC
Q 015363          314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMD  372 (408)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg-~~l~s~~-d~~v~~wd~~~~  372 (408)
                      +++.+    ..+.+|            ...|.+++|+|++ .+|++++ |+.|++||+...
T Consensus       294 ~~~~~----~~~~~~------------~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          294 SAEQL----SQFPAR------------GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             SCCEE----EEEECS------------SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             CCccc----eeecCC------------CCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence            88654    555555            4789999999999 8999986 799999999873

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.3e-32  Score=243.19  Aligned_cols=281  Identities=12%  Similarity=0.083  Sum_probs=209.8

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .|.+.|++++|+|++++|++|+.||.|+||++.++...                    .....+.+|.            
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~--------------------~~~~~~~~~~------------   56 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--------------------VDLLQSLRYK------------   56 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE--------------------EEEEEEEECS------------
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc--------------------ccceeeeecC------------
Confidence            69999999999999999999999999999999866410                    1123445676            


Q ss_pred             cceeEEEEeecCCCc-EEEEEeCCCeEEEEEc-CCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          113 EKINKIRWCQSANSA-LYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      ..|++++|+|+  +. +|++++.||.|++||+ .+++... +....+      .+.+.       .+.|+| +..+    
T Consensus        57 ~~v~~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~------~~~v~-------~l~~~~-~~~l----  115 (342)
T 1yfq_A           57 HPLLCCNFIDN--TDLQIYVGTVQGEILKVDLIGSPSFQA-LTNNEA------NLGIC-------RICKYG-DDKL----  115 (342)
T ss_dssp             SCEEEEEEEES--SSEEEEEEETTSCEEEECSSSSSSEEE-CBSCCC------CSCEE-------EEEEET-TTEE----
T ss_pred             CceEEEEECCC--CCcEEEEEcCCCeEEEEEeccCCceEe-ccccCC------CCceE-------EEEeCC-CCEE----
Confidence            77999999876  88 9999999999999999 8876533 222001      23344       689999 8877    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccc---cccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC-CC
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETN---LVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI-SN  265 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~-~~  265 (408)
                              ++++.|+.|++|| +......   ....+...+  .|...+.+++|+|++  ++++ .|+.|++||++. ..
T Consensus       116 --------~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~  182 (342)
T 1yfq_A          116 --------IAASWDGLIEVID-PRNYGDGVIAVKNLNSNNT--KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCED  182 (342)
T ss_dssp             --------EEEETTSEEEEEC-HHHHTTBCEEEEESCSSSS--SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTT
T ss_pred             --------EEEcCCCeEEEEc-ccccccccccccCCeeeEE--eeCCceEEEEecCCc--EEEEeCCCeEEEEECCcccc
Confidence                    9999999999999 5431000   002223332  377899999999988  7777 999999999996 43


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcC-CCCceEEEEeCCCeEEEEEcCCC--ceecccccccccccCCCCccccccccc
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQS--ALCDTHSKLFEEQEAPGTRSFFTEIIA  342 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~  342 (408)
                      ......      ...|...+.+++|+| ++ .+|++++.||.|++|+++..  .........+..|....   .-.+|..
T Consensus       183 ~~~~~~------~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  252 (342)
T 1yfq_A          183 DNGTIE------ESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL---KDTNLAY  252 (342)
T ss_dssp             CCCEEE------ECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT---TCCSSCC
T ss_pred             ccceee------ecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc---cccccce
Confidence            332221      345778899999999 99 89999999999999999876  11112225555553110   0113445


Q ss_pred             eeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec-ccccceEE
Q 015363          343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKVM  390 (408)
Q Consensus       343 ~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~  390 (408)
                      .|.+++|+|++++|++++ |+.|++||+.+ ++++..+.+| ......+.
T Consensus       253 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~  301 (342)
T 1yfq_A          253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQT-RKKIKNFAKFNEDSVVKIA  301 (342)
T ss_dssp             CEEEEEECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSSSEEEEEE
T ss_pred             eEEEEEEcCCCCEEEEecCCceEEEEcCcc-HhHhhhhhcccCCCceEec
Confidence            899999999999999985 79999999997 7899999998 77777766

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.5e-32  Score=269.03  Aligned_cols=264  Identities=15%  Similarity=0.181  Sum_probs=217.9

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++|+|++++||+|+.||.|+|||+.++.                       .+..+.+|.          
T Consensus         9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----------------------~~~~~~~~~----------   55 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----------------------EVRSIQVTE----------   55 (814)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS----------
T ss_pred             eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEEecCC----------
Confidence            35799999999999999999999999999999987764                       345677888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|++++|+|+  +.+|++++.||.|++||+.+++....+..+.        +.+.       .++|+|+++.+    
T Consensus        56 --~~v~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--------~~v~-------~~~~s~~~~~l----  112 (814)
T 3mkq_A           56 --TPVRAGKFIAR--KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP--------DYIR-------SIAVHPTKPYV----  112 (814)
T ss_dssp             --SCEEEEEEEGG--GTEEEEEETTSEEEEEETTTCCEEEEEECCS--------SCEE-------EEEECSSSSEE----
T ss_pred             --CcEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEecCC--------CCEE-------EEEEeCCCCEE----
Confidence              77999999876  8899999999999999999998877776543        2344       78999999987    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                              ++++.|+.|++|+ +...     ...... ..+|...|.+++|+| ++..|+++ .|+.|++||+.......
T Consensus       113 --------~~~~~dg~i~vw~-~~~~-----~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~  177 (814)
T 3mkq_A          113 --------LSGSDDLTVKLWN-WENN-----WALEQT-FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF  177 (814)
T ss_dssp             --------EEEETTSEEEEEE-GGGT-----SEEEEE-EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred             --------EEEcCCCEEEEEE-CCCC-----ceEEEE-EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence                    9999999999999 4321     122233 378889999999999 78899998 89999999998554443


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcC--CCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      ..       ...+...+.+++|+|  ++ .+|++++.||.|++||+++++..    ..+.+|            ...|.+
T Consensus       178 ~~-------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~~~~------------~~~v~~  233 (814)
T 3mkq_A          178 TL-------TTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCV----ATLEGH------------MSNVSF  233 (814)
T ss_dssp             EE-------ECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEE----EEEECC------------SSCEEE
T ss_pred             EE-------ecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEE----EEEcCC------------CCCEEE
Confidence            32       233457899999999  88 89999999999999999987543    555555            478999


Q ss_pred             EEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEE
Q 015363          347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVM  390 (408)
Q Consensus       347 ~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  390 (408)
                      ++|+|++.+|++++ |+.|++||+.+ ++.+..+..|......+.
T Consensus       234 ~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~  277 (814)
T 3mkq_A          234 AVFHPTLPIIISGSEDGTLKIWNSST-YKVEKTLNVGLERSWCIA  277 (814)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTT-CSEEEEECCSSSSEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEeecCCCcEEEEE
Confidence            99999999999985 79999999997 788999888876655554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-32  Score=247.87  Aligned_cols=279  Identities=16%  Similarity=0.235  Sum_probs=210.6

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      |.+.|++++|+|++++|++|+.||.|++|+.. +.                       ....+.+|.            .
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~-----------------------~~~~~~~~~------------~  150 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GA-----------------------LLNVLNFHR------------A  150 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-SC-----------------------EEEEECCCC------------S
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CC-----------------------eeeeccCCC------------c
Confidence            68899999999999999999999999999932 22                       345677887            7


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      .|.+++|+|+  +.+|++++.|+.|++||+.+++....+..+.....................+.|++++..        
T Consensus       151 ~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  220 (425)
T 1r5m_A          151 PIVSVKWNKD--GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF--------  220 (425)
T ss_dssp             CEEEEEECTT--SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEE--------
T ss_pred             cEEEEEECCC--CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEE--------
Confidence            7999999754  889999999999999999999887776654432100000000000011226778877653        


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                           ++++.++.|++|+ +..      ......+ ..|...|.+++|+|++++|+++ .|+.|++||++... ....  
T Consensus       221 -----~~~~~~g~i~~~d-~~~------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~--  284 (425)
T 1r5m_A          221 -----VIPGPKGAIFVYQ-ITE------KTPTGKL-IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQNC--  284 (425)
T ss_dssp             -----EEECGGGCEEEEE-TTC------SSCSEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS-CSEE--
T ss_pred             -----EEEcCCCeEEEEE-cCC------Cceeeee-ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-cceE--
Confidence                 7888999999999 433      2233333 6788999999999999999999 89999999999544 3332  


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  352 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd  352 (408)
                           +..|...|.+++|+|++  ++++++.|+.|++||+++++..    ..+..|            ...|.+++|+|+
T Consensus       285 -----~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~----~~~~~~------------~~~i~~~~~s~~  341 (425)
T 1r5m_A          285 -----FYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLL----ALSIVD------------GVPIFAGRISQD  341 (425)
T ss_dssp             -----ECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEE----EEEECT------------TCCEEEEEECTT
T ss_pred             -----ecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEe----EecccC------------CccEEEEEEcCC
Confidence                 46688999999999998  8899999999999999988654    455554            468999999999


Q ss_pred             CCEEEEeC-CCeEEEEECCCCCC--------------------ceeeeeeccc--ccceEEecCCCeee
Q 015363          353 GRHILSRD-YMTLKLWDINMDSG--------------------PVATFQVHEH--LRPKVMHSSKNYFM  398 (408)
Q Consensus       353 g~~l~s~~-d~~v~~wd~~~~~~--------------------~~~~~~~~~~--~~~~~~~~~~~~~~  398 (408)
                      +++|++++ |+.|++||+++ ++                    ++..+.+|..  ....+....++..+
T Consensus       342 ~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  409 (425)
T 1r5m_A          342 GQKYAVAFMDGQVNVYDLKK-LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKI  409 (425)
T ss_dssp             SSEEEEEETTSCEEEEECHH-HHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEE
T ss_pred             CCEEEEEECCCeEEEEECCC-CccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceE
Confidence            99999985 79999999987 56                    7889999865  55555544444443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-32  Score=235.23  Aligned_cols=266  Identities=16%  Similarity=0.170  Sum_probs=207.0

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++| |++++|++|+.||.|++||+.++.                       ....+..|.          
T Consensus        14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-----------------------~~~~~~~~~----------   59 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-----------------------LGTVVYTGQ----------   59 (313)
T ss_dssp             ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-----------------------EEEEEEECS----------
T ss_pred             hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-----------------------EEEEeecCC----------
Confidence            3579999999999 999999999999999999997654                       245566777          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc---EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK---VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                        ..|.+++|+|+  +.++++++.|+.|++|++....   ....+..+        .+.+.       ++.|  ++..+ 
T Consensus        60 --~~v~~~~~~~~--~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~--------~~~i~-------~~~~--~~~~l-  117 (313)
T 3odt_A           60 --GFLNSVCYDSE--KELLLFGGKDTMINGVPLFATSGEDPLYTLIGH--------QGNVC-------SLSF--QDGVV-  117 (313)
T ss_dssp             --SCEEEEEEETT--TTEEEEEETTSCEEEEETTCCTTSCC-CEECCC--------SSCEE-------EEEE--ETTEE-
T ss_pred             --ccEEEEEECCC--CCEEEEecCCCeEEEEEeeecCCCCcccchhhc--------ccCEE-------EEEe--cCCEE-
Confidence              77999999765  8899999999999999987642   22233222        22233       4555  56665 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-cCCeEEEEeCCCCC
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                 ++++.++.|++|| .        ...... ...|...+.+++|.| +++.++++ .|+.|++||..   
T Consensus       118 -----------~~~~~d~~i~~~d-~--------~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---  173 (313)
T 3odt_A          118 -----------ISGSWDKTAKVWK-E--------GSLVYN-LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---  173 (313)
T ss_dssp             -----------EEEETTSEEEEEE-T--------TEEEEE-EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---
T ss_pred             -----------EEEeCCCCEEEEc-C--------CcEEEe-cccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---
Confidence                       9999999999998 1        122233 367889999999988 88999998 99999999944   


Q ss_pred             ceeeEeecCCCcccC-CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          266 QSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      .....       +.. |...+.+++|+|++ . +++++.|+.|++||+++++..    ..+.+|            ...|
T Consensus       174 ~~~~~-------~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~----~~~~~~------------~~~i  228 (313)
T 3odt_A          174 KVIKT-------FSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDVL----RTYEGH------------ESFV  228 (313)
T ss_dssp             EEEEE-------ECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCEE----EEEECC------------SSCE
T ss_pred             ceEEE-------EeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhhh----hhhhcC------------CceE
Confidence            22222       233 78899999999999 6 899999999999999988654    555555            4789


Q ss_pred             EEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeece
Q 015363          345 SDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNI  403 (408)
Q Consensus       345 ~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  403 (408)
                      .+++|+|++. |+++ .|+.|++||+++ ++++..+..|......+....++.+++....
T Consensus       229 ~~~~~~~~~~-l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d  286 (313)
T 3odt_A          229 YCIKLLPNGD-IVSCGEDRTVRIWSKEN-GSLKQVITLPAISIWSVDCMSNGDIIVGSSD  286 (313)
T ss_dssp             EEEEECTTSC-EEEEETTSEEEEECTTT-CCEEEEEECSSSCEEEEEECTTSCEEEEETT
T ss_pred             EEEEEecCCC-EEEEecCCEEEEEECCC-CceeEEEeccCceEEEEEEccCCCEEEEeCC
Confidence            9999999996 5555 689999999998 7999999999887777766666666655443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=250.20  Aligned_cols=294  Identities=13%  Similarity=0.199  Sum_probs=214.5

Q ss_pred             eeeccceEEEEECCCCC-eEEEe----------ecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCC
Q 015363           32 VQEVDIISAIEFDKSGD-HLATG----------DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE  100 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~-~l~sg----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~  100 (408)
                      +.+...|.+++|+|+++ +||+|          +.|+.|+||++.++...                    +.+.. ..|.
T Consensus         9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------~~~~~-~~~~   67 (416)
T 2pm9_A            9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------KPIAS-LQVD   67 (416)
T ss_dssp             -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------SCSCC-CCCS
T ss_pred             HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------cEEEE-EecC
Confidence            45667899999999987 99999          88999999999876421                    01111 2344


Q ss_pred             cccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCC----CcEEEEeccCCCCcccCCCCCeEeecCCcee
Q 015363          101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP  176 (408)
Q Consensus       101 ~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (408)
                                  ..|++++|+|+  +.+|++++.|+.|++||+.+    .+....+..+.        +.+.       +
T Consensus        68 ------------~~v~~~~~s~~--~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~--------~~v~-------~  118 (416)
T 2pm9_A           68 ------------SKFNDLDWSHN--NKIIAGALDNGSLELYSTNEANNAINSMARFSNHS--------SSVK-------T  118 (416)
T ss_dssp             ------------SCEEEEEECSS--SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS--------SCCC-------E
T ss_pred             ------------CceEEEEECCC--CCeEEEEccCCeEEEeecccccccccchhhccCCc--------cceE-------E
Confidence                        77999999755  88999999999999999987    33444444332        2333       6


Q ss_pred             eEEccC-CCeeecccccccCccccCCCCCceeeeceeeecccccc---ccccceeeccccccceEEEEeCCC-CCEEEEe
Q 015363          177 KSYMAN-GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL---VAGCRRIYAHAHDYHINSISNNSD-GETFISA  251 (408)
Q Consensus       177 ~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~  251 (408)
                      +.|+|+ +..+            ++++.|+.|++|| +.......   ....... ...|...|.+++|+|+ +.+|+++
T Consensus       119 ~~~~~~~~~~l------------~s~~~dg~v~iwd-~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~  184 (416)
T 2pm9_A          119 VKFNAKQDNVL------------ASGGNNGEIFIWD-MNKCTESPSNYTPLTPGQ-SMSSVDEVISLAWNQSLAHVFASA  184 (416)
T ss_dssp             EEECSSSTTBE------------EEECSSSCEEBCB-TTTTSSCTTTCCCBCCCC-SCCSSCCCCEEEECSSCTTEEEEE
T ss_pred             EEEcCCCCCEE------------EEEcCCCeEEEEE-CCCCcccccccccccccc-ccCCCCCeeEEEeCCCCCcEEEEE
Confidence            899998 7776            9999999999999 54433100   0001111 2578889999999999 7899998


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEEEEcCCCceecccccccc-
Q 015363          252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFE-  326 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~-  326 (408)
                       .|+.|++||++.. .....+... ....+|...+.+++|+|++..+|++++.|+   .|++||++++...   +..+. 
T Consensus       185 ~~dg~v~iwd~~~~-~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~~  259 (416)
T 2pm9_A          185 GSSNFASIWDLKAK-KEVIHLSYT-SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLNQ  259 (416)
T ss_dssp             SSSSCEEEEETTTT-EEEEEECCC-CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCCS
T ss_pred             cCCCCEEEEECCCC-CcceEEecc-ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEeec
Confidence             8999999999954 443332110 112234788999999999867999999998   9999999986422   24444 


Q ss_pred             cccCCCCccccccccceeEEEEEcc-CCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCC-eeeee---
Q 015363          327 EQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKN-YFMGL---  400 (408)
Q Consensus       327 ~~~~~~~~~~~~~h~~~i~~~~~sp-dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---  400 (408)
                      +|            ...|.+++|+| ++++|++++ |+.|++||+++ ++++..+.+|......+....++ .+++.   
T Consensus       260 ~~------------~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~  326 (416)
T 2pm9_A          260 GH------------QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWCFKTKFAPEAPDLFACASF  326 (416)
T ss_dssp             CC------------SSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred             Cc------------cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence            44            57899999999 899999985 79999999998 79999999998877666654444 34322   


Q ss_pred             eceeeec
Q 015363          401 DNIHTLY  407 (408)
Q Consensus       401 d~~~~~~  407 (408)
                      |...++|
T Consensus       327 d~~i~iw  333 (416)
T 2pm9_A          327 DNKIEVQ  333 (416)
T ss_dssp             SSEEEEE
T ss_pred             CCcEEEE
Confidence            4444444

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-33  Score=269.11  Aligned_cols=261  Identities=15%  Similarity=0.252  Sum_probs=203.1

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.++|++++|+|++++|++|+.||.|+||++.++.                     .+....+.+|.          
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------------~~~~~~l~~h~----------   53 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE----------   53 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------------EEEEEEECCCS----------
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------------CccceeccCCc----------
Confidence            35799999999999999999999999999999987442                     22456788888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccC--CCeeec
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN--GGCGER  188 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~l~~  188 (408)
                        ..|++++|+|+.++.+|++++.||.|++||+.+++.........+      .+.+.       ++.|+|+  +..+  
T Consensus        54 --~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h------~~~V~-------~v~~sp~~~~~~l--  116 (753)
T 3jro_A           54 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH------SASVN-------SVQWAPHEYGPLL--  116 (753)
T ss_dssp             --SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCC------SSCEE-------EEEECCGGGCSEE--
T ss_pred             --CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCC------CCCeE-------EEEECCCCCCCEE--
Confidence              779999998766688999999999999999999874333333222      22344       7899999  8887  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-------------CCCEEEEe-cCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-------------DGETFISA-DDL  254 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-------------~~~~l~~~-~d~  254 (408)
                                ++++.|+.|++|| +......    .... ..+|...|.+++|+|             ++.+|++| .||
T Consensus       117 ----------~sgs~dg~I~vwd-l~~~~~~----~~~~-~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg  180 (753)
T 3jro_A          117 ----------LVASSDGKVSVVE-FKENGTT----SPII-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN  180 (753)
T ss_dssp             ----------EEEETTSEEEEEE-CCSSSCC----CCEE-EECCSSCEEEEEECCCC---------CGGGCCEEEEETTS
T ss_pred             ----------EEEeCCCcEEEEE-eecCCCc----ceeE-eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC
Confidence                      9999999999999 5443211    1112 368889999999999             58899998 999


Q ss_pred             eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC---CCceEEEEeCCCeEEEEEcCCCcee-cccccccccccC
Q 015363          255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALC-DTHSKLFEEQEA  330 (408)
Q Consensus       255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~  330 (408)
                      .|++||++.........    ..+.+|...|++++|+|+   + .+|++++.||.|++||++++... ......      
T Consensus       181 ~I~iwd~~~~~~~~~~~----~~~~~h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~------  249 (753)
T 3jro_A          181 LVKIWKYNSDAQTYVLE----STLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWKKTLLK------  249 (753)
T ss_dssp             CEEEEEEETTTTEEEEE----EEECCCSSCEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSSCCBCCBSS------
T ss_pred             eEEEEeccCCcccceee----eeecCCCCcEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCCcceeEEec------
Confidence            99999998654432222    126789999999999999   7 99999999999999999986421 001111      


Q ss_pred             CCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCC
Q 015363          331 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMD  372 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~  372 (408)
                            ...|...|.+++|+|+|++|++|+ ||.|++|+++..
T Consensus       250 ------~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          250 ------EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             ------SSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             ------cCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence                  123457899999999999999985 799999999863

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-31  Score=236.07  Aligned_cols=240  Identities=11%  Similarity=0.149  Sum_probs=196.1

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .|...|.+++|+|++++|++|+.||.|++||+.+++.                     .....+..|.            
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---------------------~~~~~~~~~~------------  141 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP---------------------RIKAELTSSA------------  141 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------------------EEEEEEECSS------------
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---------------------ceeeecccCC------------
Confidence            6889999999999999999999999999999887642                     1344567777            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..|.+++|+|+  +.++++++.|+.|++||+.+++....+..+.        +.+.       .+.|+|+++.+      
T Consensus       142 ~~i~~~~~~~~--~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--------~~i~-------~~~~~~~~~~l------  198 (337)
T 1gxr_A          142 PACYALAISPD--SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--------DGAS-------CIDISNDGTKL------  198 (337)
T ss_dssp             SCEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEEEECCCS--------SCEE-------EEEECTTSSEE------
T ss_pred             CceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCceeeeeeccc--------CceE-------EEEECCCCCEE------
Confidence            67999999754  7899999999999999999988777665542        2344       68999999987      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                            ++++.++.|++|| +...      +....  ..+...+.+++|+|++++|+++ .++.|++||++... ...  
T Consensus       199 ------~~~~~dg~i~~~d-~~~~------~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~~--  260 (337)
T 1gxr_A          199 ------WTGGLDNTVRSWD-LREG------RQLQQ--HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQ--  260 (337)
T ss_dssp             ------EEEETTSEEEEEE-TTTT------EEEEE--EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEE--
T ss_pred             ------EEEecCCcEEEEE-CCCC------ceEee--ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eEE--
Confidence                  8999999999999 4332      22222  2466789999999999999999 89999999999543 322  


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                            +..|...|.+++|+|++ ++|++++.|+.|++||+.+++..    .. ..+            ...|.+++|+|
T Consensus       261 ------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~----~~-~~~------------~~~v~~~~~s~  316 (337)
T 1gxr_A          261 ------LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASI----FQ-SKE------------SSSVLSCDISV  316 (337)
T ss_dssp             ------ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EE-EEC------------SSCEEEEEECT
T ss_pred             ------EcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeEE----EE-ecC------------CCcEEEEEECC
Confidence                  46788999999999999 89999999999999999988653    11 122            36899999999


Q ss_pred             CCCEEEEeC-CCeEEEEECC
Q 015363          352 NGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       352 dg~~l~s~~-d~~v~~wd~~  370 (408)
                      ++++|++++ |+.|++|++.
T Consensus       317 ~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          317 DDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             TSCEEEEEETTSCEEEEEEE
T ss_pred             CCCEEEEecCCCeEEEEEEe
Confidence            999999985 7999999973

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-31  Score=247.45  Aligned_cols=275  Identities=15%  Similarity=0.155  Sum_probs=203.8

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++|+|++ +|++|+.||+|++||+.+++                       ....+.+|.          
T Consensus       158 ~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-----------------------~~~~~~~h~----------  203 (464)
T 3v7d_B          158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-----------------------CTHVFEGHN----------  203 (464)
T ss_dssp             ECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS----------
T ss_pred             EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-----------------------EEEEECCCC----------
Confidence            34699999999999988 89999999999999998765                       345678888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc--ccCCCC--CeE-e-ecCCceeeEEccCCC
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE--KAAGNG--PIF-G-SHVSAIPKSYMANGG  184 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~--~v~-~-~~~~~~~~~~~~~~~  184 (408)
                        ..|.+++|+|.+++.++++++.|++|++||+.++.............  ...+..  ... . ........++++++.
T Consensus       204 --~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  281 (464)
T 3v7d_B          204 --STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN  281 (464)
T ss_dssp             --SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETT
T ss_pred             --CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCC
Confidence              77999999987788899999999999999998765433221111000  000000  000 0 000111234466666


Q ss_pred             eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC
Q 015363          185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI  263 (408)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~  263 (408)
                      .+            ++++.|+.|++|| +..      ..+...+ .+|...|.+++|+|+++.+++| .|+.|++||+++
T Consensus       282 ~l------------~~~~~d~~i~vwd-~~~------~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          282 IV------------VSGSYDNTLIVWD-VAQ------MKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             EE------------EEEETTSCEEEEE-TTT------TEEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             EE------------EEEeCCCeEEEEE-CCC------CcEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            66            9999999999999 432      3344444 7889999999999999999999 999999999984


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                       +.....       +.+|...|.+++|+  + .+|++++.||.|++||++++...    .... +            ...
T Consensus       342 -~~~~~~-------~~~h~~~v~~~~~~--~-~~l~s~s~dg~v~vwd~~~~~~~----~~~~-~------------~~~  393 (464)
T 3v7d_B          342 -GELMYT-------LQGHTALVGLLRLS--D-KFLVSAAADGSIRGWDANDYSRK----FSYH-H------------TNL  393 (464)
T ss_dssp             -TEEEEE-------ECCCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCCEE----EEEE-C------------TTC
T ss_pred             -CcEEEE-------EeCCCCcEEEEEEc--C-CEEEEEeCCCcEEEEECCCCcee----eeec-C------------CCC
Confidence             444433       57899999999997  4 68999999999999999987532    1111 1            246


Q ss_pred             eEEEEEccCCCEEEEeCCCeEEEEECCCCCCceee-eeecccccceEE
Q 015363          344 ISDIKFARNGRHILSRDYMTLKLWDINMDSGPVAT-FQVHEHLRPKVM  390 (408)
Q Consensus       344 i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~-~~~~~~~~~~~~  390 (408)
                      +..++|+|++++|++|+|+.|++||+++ +++++. +..|......+.
T Consensus       394 ~~~~~~~~~~~~l~~~~dg~i~iwd~~~-g~~~~~~~~~~~~~v~~v~  440 (464)
T 3v7d_B          394 SAITTFYVSDNILVSGSENQFNIYNLRS-GKLVHANILKDADQIWSVN  440 (464)
T ss_dssp             CCEEEEEECSSEEEEEETTEEEEEETTT-CCEEESCTTTTCSEEEEEE
T ss_pred             ccEEEEEeCCCEEEEecCCeEEEEECCC-CcEEehhhccCCCcEEEEE
Confidence            7788999999999999999999999998 688775 566655555554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=243.86  Aligned_cols=286  Identities=13%  Similarity=0.144  Sum_probs=204.2

Q ss_pred             CcccceeeecccCcCcccceeeccceEEEEECCC---CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCc
Q 015363           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE   89 (408)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~---~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~   89 (408)
                      .-..|++..  ++........|.+.|++++|+|+   +++|++|+.||.|++||+.++..                    
T Consensus        45 ~v~iw~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------  102 (357)
T 3i2n_A           45 VIQLYEIQH--GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM--------------------  102 (357)
T ss_dssp             EEEEEEECS--SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS--------------------
T ss_pred             EEEEEeCCC--CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc--------------------
Confidence            345576654  12122234579999999999998   69999999999999999887651                    


Q ss_pred             cceeeeeccCCcccccccccccccceeEEEEee----cCCCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCC
Q 015363           90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ----SANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGN  164 (408)
Q Consensus        90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p----~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~  164 (408)
                        ....+.+|.            ..|.++.|.|    ++++.+|++++.|+.|++||+.+++ ....+..+....    .
T Consensus       103 --~~~~~~~~~------------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~  164 (357)
T 3i2n_A          103 --PVYSVKGHK------------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN----K  164 (357)
T ss_dssp             --CSEEECCCS------------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC----C
T ss_pred             --cEEEEEecc------------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC----C
Confidence              235677888            7799997764    3568899999999999999999876 444444332210    1


Q ss_pred             CCeEeecCCceeeE----EccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEE
Q 015363          165 GPIFGSHVSAIPKS----YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS  240 (408)
Q Consensus       165 ~~v~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  240 (408)
                      ..+.       ++.    |+|++..+            ++++.++.|++|| +....      .. . ...|...|.+++
T Consensus       165 ~~v~-------~~~~~~~~~~~~~~l------------~~~~~d~~i~i~d-~~~~~------~~-~-~~~~~~~v~~~~  216 (357)
T 3i2n_A          165 RDCW-------TVAFGNAYNQEERVV------------CAGYDNGDIKLFD-LRNMA------LR-W-ETNIKNGVCSLE  216 (357)
T ss_dssp             CCEE-------EEEEECCCC-CCCEE------------EEEETTSEEEEEE-TTTTE------EE-E-EEECSSCEEEEE
T ss_pred             CceE-------EEEEEeccCCCCCEE------------EEEccCCeEEEEE-CccCc------ee-e-ecCCCCceEEEE
Confidence            1233       344    77899887            9999999999999 53322      11 1 256778999999


Q ss_pred             eCC---CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363          241 NNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA  316 (408)
Q Consensus       241 ~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  316 (408)
                      |+|   ++.+|+++ .|+.|++||++..... ..+..  ..+.+|...|++++|+|++..+|++++.||.|++||++.+.
T Consensus       217 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          217 FDRKDISMNKLVATSLEGKFHVFDMRTQHPT-KGFAS--VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             ESCSSSSCCEEEEEESTTEEEEEEEEEEETT-TEEEE--EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             cCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-cceee--eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            999   89999999 8999999999854322 21110  01347899999999999993389999999999999998764


Q ss_pred             eeccccccccccc-----CCCCccccccccceeEEEEEccCCCEEE-EeC-CCeEEEEECCC
Q 015363          317 LCDTHSKLFEEQE-----APGTRSFFTEIIASISDIKFARNGRHIL-SRD-YMTLKLWDINM  371 (408)
Q Consensus       317 ~~~~~~~~~~~~~-----~~~~~~~~~~h~~~i~~~~~spdg~~l~-s~~-d~~v~~wd~~~  371 (408)
                      ....  ....+..     .......+.+|...|.+++|+|++++|+ +++ |+.|++||+.+
T Consensus       294 ~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          294 QRSK--KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             CC----CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             cccc--ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            3210  0000000     0011223456678999999999999988 675 79999999976

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.7e-33  Score=246.87  Aligned_cols=263  Identities=14%  Similarity=0.194  Sum_probs=197.0

Q ss_pred             eccceEEEEECCC----CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           34 EVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        34 h~~~V~~~~~s~~----~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      |...|++++|+|+    +++|++|+.||.|++||+.+++                       .+..+.+|.         
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----------------------~~~~~~~~~---------  115 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-----------------------CIKHYVGHG---------  115 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-----------------------EEEEEESCC---------
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-----------------------EeeeecCCC---------
Confidence            6688999999999    6799999999999999988664                       345677888         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|.+++|+|. ++.+|++++.|+.|++||+.+++....+......     .+.+.       .+.|+|++..+   
T Consensus       116 ---~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~v~-------~~~~~~~~~~l---  176 (366)
T 3k26_A          116 ---NAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-----RDEVL-------SADYDLLGEKI---  176 (366)
T ss_dssp             ---SCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC-----SSCEE-------EEEECTTSSEE---
T ss_pred             ---CcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccc-----cCcee-------EEEECCCCCEE---
Confidence               77999999761 4779999999999999999998877766321110     23344       78999999987   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccc---------------------cceeeccccccceEEEEeCCCCCEE
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG---------------------CRRIYAHAHDYHINSISNNSDGETF  248 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~v~~i~~~~~~~~l  248 (408)
                               ++++.|+.|++|| +..........                     +.......|...|.+++|+  +++|
T Consensus       177 ---------~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l  244 (366)
T 3k26_A          177 ---------MSCGMDHSLKLWR-INSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI  244 (366)
T ss_dssp             ---------EEEETTSCEEEEE-SCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred             ---------EEecCCCCEEEEE-CCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence                     9999999999999 54322110000                     0001113488999999998  7799


Q ss_pred             EEe-cCCeEEEEeCCCCCceeeEeecC------CCcccCCcCCeEEEEEcCC--CCceEEEEeCCCeEEEEEcCCCceec
Q 015363          249 ISA-DDLRINLWNLEISNQSFNIVDVK------PANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCD  319 (408)
Q Consensus       249 ~~~-~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~  319 (408)
                      +++ .|+.|++||++............      ...+..|...|++++|+|+  + ++|++|+.||.|++||+++++...
T Consensus       245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~  323 (366)
T 3k26_A          245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHK  323 (366)
T ss_dssp             EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGG
T ss_pred             EEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCcc
Confidence            998 89999999998554311100000      0125678888999999999  8 999999999999999999875432


Q ss_pred             ccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECC
Q 015363          320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~  370 (408)
                      .....+.+|.          |...|.+++|+|++++|++++ |+.|++||+.
T Consensus       324 ~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          324 AKCTTLTHHK----------CGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CEEEEECCTT----------CCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ccceEEcccc----------cCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            2223444441          147899999999999999985 7999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.6e-32  Score=260.95  Aligned_cols=256  Identities=13%  Similarity=0.229  Sum_probs=190.2

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|...|++++|+|++++|++|+.||+|+|||+.++.                       ....+.+|.          
T Consensus       426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~-----------------------~~~~~~~h~----------  472 (694)
T 3dm0_A          426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV-----------------------STRRFVGHT----------  472 (694)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS----------
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc-----------------------ceeEEeCCC----------
Confidence            45799999999999999999999999999999988764                       345678898          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC--eeec
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG--CGER  188 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~l~~  188 (408)
                        ..|.+++|+|+  +.+|++++.|++|++||+..............     ....+.       ++.|+|++.  .+  
T Consensus       473 --~~v~~~~~s~~--~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-----h~~~v~-------~~~~~~~~~~~~l--  534 (694)
T 3dm0_A          473 --KDVLSVAFSLD--NRQIVSASRDRTIKLWNTLGECKYTISEGGEG-----HRDWVS-------CVRFSPNTLQPTI--  534 (694)
T ss_dssp             --SCEEEEEECTT--SSCEEEEETTSCEEEECTTSCEEEEECSSTTS-----CSSCEE-------EEEECSCSSSCEE--
T ss_pred             --CCEEEEEEeCC--CCEEEEEeCCCEEEEEECCCCcceeeccCCCC-----CCCcEE-------EEEEeCCCCcceE--
Confidence              77999999755  88999999999999999876543333221111     022344       789999873  44  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                ++++.|+.|++|| +..      ..+... +.+|...|++++|+|++++|+++ .|+.|++||+++.. .
T Consensus       535 ----------~s~s~d~~v~vwd-~~~------~~~~~~-~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~-~  595 (694)
T 3dm0_A          535 ----------VSASWDKTVKVWN-LSN------CKLRST-LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK-K  595 (694)
T ss_dssp             ----------EEEETTSCEEEEE-TTT------CCEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE-E
T ss_pred             ----------EEEeCCCeEEEEE-CCC------CcEEEE-EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-e
Confidence                      8999999999999 533      223334 37899999999999999999999 99999999999544 3


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC-------Cccccccc
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG-------TRSFFTEI  340 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~h  340 (408)
                      +..       +. +...+.+++|+|++ .+|++++ ++.|++||++++..+    ..+..+....       .......+
T Consensus       596 ~~~-------~~-~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  661 (694)
T 3dm0_A          596 LYS-------LE-ANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSIV----EDLKVDLKAEAEKADNSGPAATKRK  661 (694)
T ss_dssp             EEC-------CB-CSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEEE----EEECCCCC----------------C
T ss_pred             EEE-------ec-CCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCCh----hhhccccccccccccccccccCCce
Confidence            321       22 35679999999998 7776654 677999999988654    2222211000       00001122


Q ss_pred             cceeEEEEEccCCCEEEEeC-CCeEEEEECC
Q 015363          341 IASISDIKFARNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       341 ~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~  370 (408)
                      ...+.+++|+|||++|++|+ ||.|++|++.
T Consensus       662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            23578999999999999995 7999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.5e-32  Score=241.30  Aligned_cols=294  Identities=14%  Similarity=0.162  Sum_probs=209.3

Q ss_pred             eeccceEEEEECCC----CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           33 QEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        33 ~h~~~V~~~~~s~~----~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      +|.++|++++|+|+    ..++++++.++.|+||++.++..                       +..+..|..       
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----------------------~~~~~~~~~-------   65 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----------------------IRLLQSYVD-------   65 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----------------------EEEEEEEEC-------
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----------------------EEeeeeccc-------
Confidence            69999999999984    45666777777999999986642                       122222110       


Q ss_pred             cccccceeEEEEeecCC--CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc-CCCe
Q 015363          109 LEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGC  185 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~  185 (408)
                      ..+...|.+++|+|+.+  +.+|++++.||.|++||+.+++....+..+.        +.+.       ++.|+| ++..
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--------~~i~-------~~~~~~~~~~~  130 (366)
T 3k26_A           66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHG--------NAIN-------ELKFHPRDPNL  130 (366)
T ss_dssp             SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCC--------SCEE-------EEEECSSCTTE
T ss_pred             cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCC--------CcEE-------EEEECCCCCCE
Confidence            01126799999998744  6799999999999999999998877766543        2344       789999 8888


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceee--ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCC
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA-DDLRINLWNLE  262 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~  262 (408)
                      +            ++++.|+.|++|| +...      .....+  ...|...|.+++|+|++++|+++ .|+.|++||++
T Consensus       131 l------------~s~~~dg~i~iwd-~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  191 (366)
T 3k26_A          131 L------------LSVSKDHALRLWN-IQTD------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN  191 (366)
T ss_dssp             E------------EEEETTSCEEEEE-TTTT------EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred             E------------EEEeCCCeEEEEE-eecC------eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence            7            9999999999999 5332      222221  15788999999999999999999 89999999998


Q ss_pred             CCCceeeEeec---------------------CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccc
Q 015363          263 ISNQSFNIVDV---------------------KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH  321 (408)
Q Consensus       263 ~~~~~~~~~~~---------------------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  321 (408)
                      ..... ..+..                     .......|...|.+++|+  + .+|++++.|+.|++||++++....  
T Consensus       192 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~--  265 (366)
T 3k26_A          192 SKRMM-NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDI--  265 (366)
T ss_dssp             SHHHH-HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCG--
T ss_pred             CCccc-cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccc--
Confidence            43321 11000                     000123488999999998  5 799999999999999998875321  


Q ss_pred             ccccccccC-CCCccccccccceeEEEEEccC--CCEEEEeC-CCeEEEEECCCCCCce----eeeeec--ccccceEEe
Q 015363          322 SKLFEEQEA-PGTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDSGPV----ATFQVH--EHLRPKVMH  391 (408)
Q Consensus       322 ~~~~~~~~~-~~~~~~~~~h~~~i~~~~~spd--g~~l~s~~-d~~v~~wd~~~~~~~~----~~~~~~--~~~~~~~~~  391 (408)
                       ..+..+.. ......+.+|...|.+++|+|+  +++|++|+ |+.|++||+.+ +++.    ..+.+|  ......+..
T Consensus       266 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~  343 (366)
T 3k26_A          266 -DKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAAIRQTSF  343 (366)
T ss_dssp             -GGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSCEEEEEE
T ss_pred             -cccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC-CCCccccceEEcccccCCceEEEEe
Confidence             11111110 1112334556788999999999  99999996 69999999987 4544    377777  455555554


Q ss_pred             cCCCeee
Q 015363          392 SSKNYFM  398 (408)
Q Consensus       392 ~~~~~~~  398 (408)
                      ..++..+
T Consensus       344 s~~~~~l  350 (366)
T 3k26_A          344 SRDSSIL  350 (366)
T ss_dssp             CTTSSEE
T ss_pred             CCCCCeE
Confidence            4444433

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3e-31  Score=241.15  Aligned_cols=257  Identities=14%  Similarity=0.191  Sum_probs=192.9

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|.+.|++|+|+|+|++||+|+.||.|+|||+.+++                       .+..+.+|.           
T Consensus       144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----------------------~~~~~~~h~-----------  189 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----------------------RLRNMTSHS-----------  189 (420)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS-----------
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----------------------EEEEEeCCC-----------
Confidence            3578899999999999999999999999999998765                       356788888           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                       ..|.++.|.    +.++++++.|+.+++||..... ....+..+..        .+.       .+.+.|++..+    
T Consensus       190 -~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~--------~~~-------~~~~~~~g~~l----  245 (420)
T 4gga_A          190 -ARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--------EVC-------GLRWAPDGRHL----  245 (420)
T ss_dssp             -SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--------CEE-------EEEECTTSSEE----
T ss_pred             -CceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEeccccc--------cee-------eeeecCCCCee----
Confidence             678888883    4599999999999999998654 3344444322        233       68899999988    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEE--e-cCCeEEEEeCCCCCc
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFIS--A-DDLRINLWNLEISNQ  266 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~--~-~d~~i~iwd~~~~~~  266 (408)
                              ++++.|+.+++|+ ....+..  ...... ...|...|.+++|+|.+. ++++  | .|++|++||+.+. .
T Consensus       246 --------~s~~~D~~v~i~~-~~~~~~~--~~~~~~-~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~  312 (420)
T 4gga_A          246 --------ASGGNDNLVNVWP-SAPGEGG--WVPLQT-FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-A  312 (420)
T ss_dssp             --------EEEETTSCEEEEE-SSCCSSC--SCCSEE-ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-E
T ss_pred             --------eeeeccccceEEe-ecccccc--ceeeee-ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-c
Confidence                    9999999999999 4432211  112222 367888999999999764 5554  3 6999999999944 4


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe--CCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      ....       +. +...+.++.|+|++ ..+++++  .|+.|+|||+++++.+    ..+.+|            .+.|
T Consensus       313 ~~~~-------~~-~~~~v~~~~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~v----~~l~gH------------~~~V  367 (420)
T 4gga_A          313 CLSA-------VD-AHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAKV----AELKGH------------TSRV  367 (420)
T ss_dssp             EEEE-------EE-CSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCEE----EEECCC------------SSCE
T ss_pred             ccee-------ec-cccceeeeeecCCC-CeEEEEEecCCCEEEEEECCCCcEE----EEEcCC------------CCCE
Confidence            4433       22 34568999999999 6666654  6899999999998654    666666            5789


Q ss_pred             EEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc
Q 015363          345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       345 ~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                      .+++|+|||++|+||+ |++|+|||+.. ..+.+..+.+...
T Consensus       368 ~~l~~spdg~~l~S~s~D~tvriWdv~~-~~~~~~~~~~~~~  408 (420)
T 4gga_A          368 LSLTMSPDGATVASAAADETLRLWRCFE-LDPARRREREKAS  408 (420)
T ss_dssp             EEEEECTTSSCEEEEETTTEEEEECCSC-SSCC---------
T ss_pred             EEEEEcCCCCEEEEEecCCeEEEEECCC-CCccchhhhccCC
Confidence            9999999999999985 79999999986 4666665555443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-31  Score=244.25  Aligned_cols=264  Identities=14%  Similarity=0.174  Sum_probs=197.8

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|.+.|++++|+|++++|++|+.||.|++||+.+++.                       ...+.+|.           
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-----------------------~~~~~~h~-----------  181 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-----------------------PRTLIGHR-----------  181 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-----------------------CEEEECCS-----------
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-----------------------ceEEcCCC-----------
Confidence            47999999999999999999999999999999987653                       35677888           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEee--------------cCCceee
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS--------------HVSAIPK  177 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~~~~  177 (408)
                       ..|.+++|+|+  +.+|++++.|++|++||+.+++....+..+...     ...+...              ......+
T Consensus       182 -~~v~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~v~~~  253 (420)
T 3vl1_A          182 -ATVTDIAIIDR--GRNVLSASLDGTIRLWECGTGTTIHTFNRKENP-----HDGVNSIALFVGTDRQLHEISTSKKNNL  253 (420)
T ss_dssp             -SCEEEEEEETT--TTEEEEEETTSCEEEEETTTTEEEEEECBTTBT-----TCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred             -CcEEEEEEcCC--CCEEEEEcCCCcEEEeECCCCceeEEeecCCCC-----CCCccEEEEecCCcceeeecccCcccce
Confidence             77999999765  789999999999999999999888777654322     1112110              0112246


Q ss_pred             EEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCe
Q 015363          178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLR  255 (408)
Q Consensus       178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~  255 (408)
                      +|+|+++.+            ++++.++.|++|| +..      ......+...|...|++++|+|++. +|+++ .|+.
T Consensus       254 ~~s~~~~~l------------~~~~~dg~i~i~d-~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  314 (420)
T 3vl1_A          254 EFGTYGKYV------------IAGHVSGVITVHN-VFS------KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM  314 (420)
T ss_dssp             CSSCTTEEE------------EEEETTSCEEEEE-TTT------CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             EEcCCCCEE------------EEEcCCCeEEEEE-CCC------CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe
Confidence            667777776            9999999999999 433      2223333356888999999999998 99998 8999


Q ss_pred             EEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcc
Q 015363          256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS  335 (408)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  335 (408)
                      |++||+++.......+      ...|...+.++.+ |++ .+|++++.|+.|++||+...... ..+..+.      ...
T Consensus       315 i~vwd~~~~~~~~~~~------~~~~~~~v~~~~~-~~~-~~l~s~~~d~~v~iw~~~~~~~~-~~~~~~~------~~~  379 (420)
T 3vl1_A          315 LAQWDLRSPECPVGEF------LINEGTPINNVYF-AAG-ALFVSSGFDTSIKLDIISDPESE-RPAIEFE------TPT  379 (420)
T ss_dssp             EEEEETTCTTSCSEEE------EESTTSCEEEEEE-ETT-EEEEEETTTEEEEEEEECCTTCC-SCEECTT------SCE
T ss_pred             EEEEEcCCCcCchhhh------hccCCCCceEEEe-CCC-CEEEEecCCccEEEEeccCCCCC-ccceecc------Ccc
Confidence            9999999665544332      1236677888855 567 79999999999999999875321 0001111      111


Q ss_pred             ccccccceeEEEEEccCCC----EEEEeCCCeEEEEECCC
Q 015363          336 FFTEIIASISDIKFARNGR----HILSRDYMTLKLWDINM  371 (408)
Q Consensus       336 ~~~~h~~~i~~~~~spdg~----~l~s~~d~~v~~wd~~~  371 (408)
                      .+.+|...|.+++|+|++.    ++++|+++.+.+|++.+
T Consensus       380 ~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          380 FLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             EEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            2445568899999999998    66667889999999964

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.3e-31  Score=243.60  Aligned_cols=268  Identities=16%  Similarity=0.191  Sum_probs=200.2

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      +.+++++|+|++++|++|+.||.|++||+.+....                       ..+..|.             .+
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-----------------------~~~~~~~-------------~~  100 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-----------------------KMLKRAD-------------YT  100 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-----------------------TTSCSCC-------------EE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEeccccee-----------------------eEEecCC-------------ce
Confidence            44568999999999999999999999998766431                       1233332             23


Q ss_pred             eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (408)
                      ....|+  +++.+|++++.|+.|++||+.+++....+..+.        +.+.       +++|+|+++.+         
T Consensus       101 ~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~--------~~v~-------~~~~~~~~~~l---------  154 (420)
T 3vl1_A          101 AVDTAK--LQMRRFILGTTEGDIKVLDSNFNLQREIDQAHV--------SEIT-------KLKFFPSGEAL---------  154 (420)
T ss_dssp             EEEEEC--SSSCEEEEEETTSCEEEECTTSCEEEEETTSSS--------SCEE-------EEEECTTSSEE---------
T ss_pred             EEEEEe--cCCCEEEEEECCCCEEEEeCCCcceeeeccccc--------CccE-------EEEECCCCCEE---------
Confidence            344564  458899999999999999999888776654442        3354       78999999987         


Q ss_pred             ccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecC
Q 015363          196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK  274 (408)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  274 (408)
                         ++++.|+.|++|| +..      .++...+ .+|...|.+++|+|++++|+++ .|+.|++||+++. +....+.. 
T Consensus       155 ---~s~s~d~~i~iwd-~~~------~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~-  221 (420)
T 3vl1_A          155 ---ISSSQDMQLKIWS-VKD------GSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG-TTIHTFNR-  221 (420)
T ss_dssp             ---EEEETTSEEEEEE-TTT------CCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEEEECB-
T ss_pred             ---EEEeCCCeEEEEe-CCC------CcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC-ceeEEeec-
Confidence               9999999999999 533      2333443 7899999999999999999999 8999999999944 44443221 


Q ss_pred             CCcccCCc---------------------CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCC
Q 015363          275 PANMEDLT---------------------EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT  333 (408)
Q Consensus       275 ~~~~~~~~---------------------~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  333 (408)
                         ...+.                     ..+.+++|+|++ .+|++|+.||.|++||+++++..    ..+.       
T Consensus       222 ---~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~-------  286 (420)
T 3vl1_A          222 ---KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQT----IQLP-------  286 (420)
T ss_dssp             ---TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEE----EEEC-------
T ss_pred             ---CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCcee----EEcc-------
Confidence               11233                     444555668899 89999999999999999988644    2222       


Q ss_pred             ccccccccceeEEEEEccCCC-EEEEeC-CCeEEEEECCCCCCceeeeeec-ccccceEEecCCCeee
Q 015363          334 RSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKVMHSSKNYFM  398 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg~-~l~s~~-d~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  398 (408)
                          .+|...|.+++|+|++. +|++|+ |+.|++||+++...++..+.+| ......+... ++..+
T Consensus       287 ----~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l  349 (420)
T 3vl1_A          287 ----SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALF  349 (420)
T ss_dssp             ----CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEE
T ss_pred             ----cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEE
Confidence                12357899999999998 999885 6999999999855668888884 4445555443 44433

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.4e-32  Score=239.35  Aligned_cols=287  Identities=11%  Similarity=0.072  Sum_probs=206.5

Q ss_pred             eeeccceEEEEECCCCC-eEEEeec---CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           32 VQEVDIISAIEFDKSGD-HLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~-~l~sg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      .+|.+.|++++|+|++. ++++|+.   ||.|+||++.+++..                      .....+|.       
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~----------------------~~~~~~~~-------   65 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----------------------LLREIEKA-------   65 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE----------------------EEEEEEES-------
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc----------------------ceeeeccc-------
Confidence            46999999999999986 5566766   999999999876531                      11122555       


Q ss_pred             ccccccceeEEEEeecC-CCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCCCCeEeecCCceee------EE
Q 015363          108 SLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPK------SY  179 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~-~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~  179 (408)
                           ..|.+++|+|+. ++.+|++++.|+.|++||+.+++ ....+..+..        .+.       ++      +|
T Consensus        66 -----~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~v~-------~~~~~~~~~~  125 (357)
T 3i2n_A           66 -----KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE--------IIN-------AIDGIGGLGI  125 (357)
T ss_dssp             -----SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSS--------CEE-------EEEEESGGGC
T ss_pred             -----CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEeccc--------ceE-------EEeecccccc
Confidence                 779999997652 25799999999999999999876 5555554432        233       34      45


Q ss_pred             ccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeecccc----ccceEEEE----eCCCCCEEEEe
Q 015363          180 MANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH----DYHINSIS----NNSDGETFISA  251 (408)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~i~----~~~~~~~l~~~  251 (408)
                      +|++..+            ++++.|+.|++|| +.....     +...+ ..|    ...+.+++    |+|++++|+++
T Consensus       126 s~~~~~l------------~~~~~d~~i~vwd-~~~~~~-----~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~  186 (357)
T 3i2n_A          126 GEGAPEI------------VTGSRDGTVKVWD-PRQKDD-----PVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAG  186 (357)
T ss_dssp             C-CCCEE------------EEEETTSCEEEEC-TTSCSS-----CSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEE
T ss_pred             CCCccEE------------EEEeCCCeEEEEe-CCCCCC-----cceec-cccCCCCCCceEEEEEEeccCCCCCEEEEE
Confidence            7888887            9999999999999 543221     12222 222    33788888    78999999999


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcC---CCCceEEEEeCCCeEEEEEcCCCceeccccccccc
Q 015363          252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP---THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE  327 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  327 (408)
                       .|+.|++||++... ...        ...|...|.+++|+|   ++ .+|++++.|+.|++||++++...    ..+..
T Consensus       187 ~~d~~i~i~d~~~~~-~~~--------~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~  252 (357)
T 3i2n_A          187 YDNGDIKLFDLRNMA-LRW--------ETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPT----KGFAS  252 (357)
T ss_dssp             ETTSEEEEEETTTTE-EEE--------EEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETT----TEEEE
T ss_pred             ccCCeEEEEECccCc-eee--------ecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcc----cceee
Confidence             89999999999543 322        345788899999999   88 89999999999999999876432    23221


Q ss_pred             ccCCCCccccccccceeEEEEEccCCC-EEEEeC-CCeEEEEECCCCC------------------Cceeeeeecccccc
Q 015363          328 QEAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDS------------------GPVATFQVHEHLRP  387 (408)
Q Consensus       328 ~~~~~~~~~~~~h~~~i~~~~~spdg~-~l~s~~-d~~v~~wd~~~~~------------------~~~~~~~~~~~~~~  387 (408)
                      .       .+.+|...|.+++|+|+++ +|++++ |+.|++||+++..                  +++..+.+|.....
T Consensus       253 ~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~  325 (357)
T 3i2n_A          253 V-------SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS  325 (357)
T ss_dssp             E-------EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred             e-------ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence            0       0224468899999999998 788885 7999999998632                  35777888888776


Q ss_pred             eEEecCCCeeee--e--eceeeec
Q 015363          388 KVMHSSKNYFMG--L--DNIHTLY  407 (408)
Q Consensus       388 ~~~~~~~~~~~~--~--d~~~~~~  407 (408)
                      .+....++..++  .  |...++|
T Consensus       326 ~~~~s~~~~~l~~s~~~d~~i~iw  349 (357)
T 3i2n_A          326 SLDWSPDKRGLCVCSSFDQTVRVL  349 (357)
T ss_dssp             EEEECSSSTTEEEEEETTSEEEEE
T ss_pred             EEEEcCCCCeEEEEecCCCcEEEE
Confidence            666555555443  2  4444444

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.9e-31  Score=239.74  Aligned_cols=275  Identities=15%  Similarity=0.229  Sum_probs=209.8

Q ss_pred             eEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeE
Q 015363           38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK  117 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  117 (408)
                      ++.|+||++ ++||+|. |++|+|||..+++..                     ....+.+|.            ..|++
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~---------------------~~~~~~~~~------------~~V~s  152 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYISS  152 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEEE
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CcEEE
Confidence            578999975 5788875 899999999887531                     122344565            67999


Q ss_pred             EEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCcc
Q 015363          118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS  197 (408)
Q Consensus       118 v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (408)
                      |+|+|  +|.+|++|+.|++|++||+.+++.......+...        +         .+++.++..+           
T Consensus       153 v~fsp--dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~--------v---------~~~s~~~~~l-----------  202 (420)
T 4gga_A          153 VAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR--------V---------GSLSWNSYIL-----------  202 (420)
T ss_dssp             EEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--------E---------EEEEEETTEE-----------
T ss_pred             EEECC--CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc--------e---------EEEeeCCCEE-----------
Confidence            99975  4889999999999999999999988877765432        2         3445566766           


Q ss_pred             ccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCC
Q 015363          198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA  276 (408)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  276 (408)
                       ++++.++.+++|+ .....     ..... +.+|...+..+.++|++++++++ .|+.+++|+..........+    .
T Consensus       203 -~sgs~d~~i~~~d-~~~~~-----~~~~~-~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~----~  270 (420)
T 4gga_A          203 -SSGSRSGHIHHHD-VRVAE-----HHVAT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----Q  270 (420)
T ss_dssp             -EEEETTSEEEEEE-TTSSS-----CEEEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS----E
T ss_pred             -EEEeCCCceeEee-ecccc-----eeeEE-ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee----e
Confidence             9999999999999 43211     12223 37899999999999999999999 99999999998544322111    1


Q ss_pred             cccCCcCCeEEEEEcCCCCceEEEE--eCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363          277 NMEDLTEVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       277 ~~~~~~~~v~~~~~~p~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                      ....|...|.+++|+|.+..+++++  +.|+.|++||++++...    ..+..+             ..+.++.|+|+++
T Consensus       271 ~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----~~~~~~-------------~~v~~~~~~~~~~  333 (420)
T 4gga_A          271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVDAH-------------SQVCSILWSPHYK  333 (420)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE----EEEECS-------------SCEEEEEEETTTT
T ss_pred             eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc----eeeccc-------------cceeeeeecCCCC
Confidence            2467889999999999986777765  46999999999998654    444444             5689999999999


Q ss_pred             EEEEe---CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee---eeceeeec
Q 015363          355 HILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG---LDNIHTLY  407 (408)
Q Consensus       355 ~l~s~---~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~  407 (408)
                      .|+++   .|+.|++||+.+ ++++.++.+|......+....++..++   .|...+||
T Consensus       334 ~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW  391 (420)
T 4gga_A          334 ELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW  391 (420)
T ss_dssp             EEEEEECTTTCCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             eEEEEEecCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            88875   369999999998 799999999999877777555555442   35555554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-31  Score=242.97  Aligned_cols=285  Identities=14%  Similarity=0.174  Sum_probs=203.2

Q ss_pred             cceeeccceEEEEECCCCC-eEEEeecCCeEEEEEe----CCCCCCCCcccccccccccccCCCccceeeeeccCCcccc
Q 015363           30 EEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFER----TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD  104 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  104 (408)
                      ....|.+.|++++|+|+++ +||+|+.||.|+||++    .++.....    +         .+...+...+.+|.    
T Consensus        40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~---------~~~~~~~~~~~~~~----  102 (425)
T 1r5m_A           40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWK----L---------TIIAELRHPFALSA----  102 (425)
T ss_dssp             EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEE----E---------EEEEEEECCCCCC-----
T ss_pred             eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccc----c---------cccccccccccccc----
Confidence            4456779999999999999 9999999999999999    66541000    0         00000111122210    


Q ss_pred             cccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC
Q 015363          105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (408)
Q Consensus       105 ~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  184 (408)
                        ....+...|++++|+|  ++.+|++++.|+.|++|| .+++....+..+.        +.+.       .+.|+|+++
T Consensus       103 --~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~--------~~v~-------~~~~~~~~~  162 (425)
T 1r5m_A          103 --SSGKTTNQVTCLAWSH--DGNSIVTGVENGELRLWN-KTGALLNVLNFHR--------APIV-------SVKWNKDGT  162 (425)
T ss_dssp             -------CBCEEEEEECT--TSSEEEEEETTSCEEEEE-TTSCEEEEECCCC--------SCEE-------EEEECTTSS
T ss_pred             --cccCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCC--------ccEE-------EEEECCCCC
Confidence              0001126799999975  488999999999999999 5555555555432        2344       789999999


Q ss_pred             eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccc---------------eEEEEeCCCCCEEE
Q 015363          185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH---------------INSISNNSDGETFI  249 (408)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~i~~~~~~~~l~  249 (408)
                      .+            ++++.++.|++|+ +...      .....+ ..+...               +.+++|+|++. ++
T Consensus       163 ~l------------~~~~~d~~i~iwd-~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  221 (425)
T 1r5m_A          163 HI------------ISMDVENVTILWN-VISG------TVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FV  221 (425)
T ss_dssp             EE------------EEEETTCCEEEEE-TTTT------EEEEEE-CCC---------------CCCBSCCEEEETTE-EE
T ss_pred             EE------------EEEecCCeEEEEE-CCCC------cEEEEe-eccccCccceeeccccCCcceeeEEEEcCCCE-EE
Confidence            87            8999999999999 5332      222222 333333               88899999865 55


Q ss_pred             Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc
Q 015363          250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  328 (408)
Q Consensus       250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  328 (408)
                      ++ .++.|++||++... ....       +..|...|.+++|+|++ .+|++++.|+.|++||+++++..    ..+..|
T Consensus       222 ~~~~~g~i~~~d~~~~~-~~~~-------~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~  288 (425)
T 1r5m_A          222 IPGPKGAIFVYQITEKT-PTGK-------LIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQ----NCFYGH  288 (425)
T ss_dssp             EECGGGCEEEEETTCSS-CSEE-------ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCS----EEECCC
T ss_pred             EEcCCCeEEEEEcCCCc-eeee-------eccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccc----eEecCC
Confidence            66 89999999999543 3332       46788999999999999 89999999999999999987543    444444


Q ss_pred             cCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee
Q 015363          329 EAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG  399 (408)
Q Consensus       329 ~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (408)
                                  ...|.+++|+|++ +|+++ .|+.|++||+++ ++++..+..|......+....++..++
T Consensus       289 ------------~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~  346 (425)
T 1r5m_A          289 ------------SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPIFAGRISQDGQKYA  346 (425)
T ss_dssp             ------------SSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEECTTCCEEEEEECTTSSEEE
T ss_pred             ------------CccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEeEecccCCccEEEEEEcCCCCEEE
Confidence                        4789999999999 77777 479999999997 789999999887766665544455443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-31  Score=240.10  Aligned_cols=248  Identities=13%  Similarity=0.189  Sum_probs=190.9

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .|.+.|++++|+|++++|++|+.||.|++||+.+++                       .+..+.+|.            
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~~~------------  176 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-----------------------KLRTMAGHQ------------  176 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS------------
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-----------------------EEEEecCCC------------
Confidence            378899999999999999999999999999987665                       345677888            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      ..|.+++|.    +.++++++.|+.|++||++. ......+..+.        +.+.       .+.|+|++..+     
T Consensus       177 ~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~v~-------~~~~~~~~~~l-----  232 (401)
T 4aez_A          177 ARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHS--------SEVC-------GLAWRSDGLQL-----  232 (401)
T ss_dssp             SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCS--------SCEE-------EEEECTTSSEE-----
T ss_pred             CceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCC--------CCee-------EEEEcCCCCEE-----
Confidence            779999993    45999999999999999984 44455544432        2344       78999999988     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe---cCCeEEEEeCCCCCce
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA---DDLRINLWNLEISNQS  267 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~---~d~~i~iwd~~~~~~~  267 (408)
                             ++++.|+.|++|| +..      ..+...+ ..|...|.+++|+|++. +++++   .|+.|++||+++. ..
T Consensus       233 -------~s~~~d~~v~iwd-~~~------~~~~~~~-~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~  296 (401)
T 4aez_A          233 -------ASGGNDNVVQIWD-ARS------SIPKFTK-TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-AR  296 (401)
T ss_dssp             -------EEEETTSCEEEEE-TTC------SSEEEEE-CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CE
T ss_pred             -------EEEeCCCeEEEcc-CCC------CCccEEe-cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CE
Confidence                   9999999999999 433      2333333 67889999999999774 55554   4999999999954 44


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEE--eCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      ...       + .+...+.+++|+|++ .+++++  +.|+.|++||+.++...  ....+.+|            ...|.
T Consensus       297 ~~~-------~-~~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~--~~~~~~~h------------~~~v~  353 (401)
T 4aez_A          297 VNT-------V-DAGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLT--KQVDIPAH------------DTRVL  353 (401)
T ss_dssp             EEE-------E-ECSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEE--EEEEEECC------------SSCCC
T ss_pred             EEE-------E-eCCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCccce--eEEEecCC------------CCCEE
Confidence            433       2 246779999999999 888884  48999999999986442  11223344            57899


Q ss_pred             EEEEccCCCEEEEeC-CCeEEEEECCCCCCceeee
Q 015363          346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       346 ~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~  379 (408)
                      +++|+|+|++|++++ |+.|++||+.+ ++.++..
T Consensus       354 ~~~~s~dg~~l~s~~~dg~i~iw~~~~-~~~~~~~  387 (401)
T 4aez_A          354 YSALSPDGRILSTAASDENLKFWRVYD-GDHVKRP  387 (401)
T ss_dssp             EEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCC-Ccccccc
Confidence            999999999999985 79999999997 5655544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.8e-32  Score=241.01  Aligned_cols=266  Identities=8%  Similarity=0.067  Sum_probs=197.5

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|...|++++|+|++++|++|+.||.|++||+.+++..                     ....+..|.          
T Consensus        48 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------------------~~~~~~~~~----------   96 (372)
T 1k8k_C           48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK---------------------PTLVILRIN----------   96 (372)
T ss_dssp             EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE---------------------EEEECCCCS----------
T ss_pred             ecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee---------------------eeEEeecCC----------
Confidence            3469999999999999999999999999999999766421                     122345566          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE---EEEe-ccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVF-DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                        ..|.+++|+|+  +.+|++++.|+.|++||+..+..   .... ..+        ...+.       ++.|+|++..+
T Consensus        97 --~~v~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~--------~~~i~-------~~~~~~~~~~l  157 (372)
T 1k8k_C           97 --RAARCVRWAPN--EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI--------RSTVL-------SLDWHPNSVLL  157 (372)
T ss_dssp             --SCEEEEEECTT--SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC--------CSCEE-------EEEECTTSSEE
T ss_pred             --CceeEEEECCC--CCEEEEEeCCCEEEEEEecCCCcceeeeeeeccc--------CCCee-------EEEEcCCCCEE
Confidence              77999999754  88999999999999999988762   1221 111        22344       78999999987


Q ss_pred             ecccccccCccccCCCCCceeeeceeeecccc------------ccccccceeeccccccceEEEEeCCCCCEEEEe-cC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQET------------NLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD  253 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  253 (408)
                                  ++++.++.|++|| +.....            .....+...+ ..|...|.+++|+|++++|+++ .|
T Consensus       158 ------------~~~~~dg~i~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d  223 (372)
T 1k8k_C          158 ------------AAGSCDFKCRIFS-AYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHD  223 (372)
T ss_dssp             ------------EEEETTSCEEEEE-CCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ------------EEEcCCCCEEEEE-cccccccccccccccccccchhhheEec-CCCCCeEEEEEECCCCCEEEEEeCC
Confidence                        9999999999999 532111            1123344443 6888999999999999999999 99


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC--Cceecccccccccc---
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQ---  328 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~---  328 (408)
                      +.|++||+++.. ....       +..|...|.+++|+|++ .+|++| .|+.|++|+++.  +...  .+..+..+   
T Consensus       224 ~~i~i~d~~~~~-~~~~-------~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~--~~~~~~~~~~~  291 (372)
T 1k8k_C          224 STVCLADADKKM-AVAT-------LASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLS--FGGRLDVPKQS  291 (372)
T ss_dssp             TEEEEEEGGGTT-EEEE-------EECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEE--ECCCCCCC---
T ss_pred             CEEEEEECCCCc-eeEE-------EccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEE--EeeccCccccc
Confidence            999999999554 4333       46688899999999999 888877 899999999988  4210  00111100   


Q ss_pred             --------------c-CCCC-------ccccccccceeEEEEEc-cCC---CEEEEeC-CCeEEEEECCCC
Q 015363          329 --------------E-APGT-------RSFFTEIIASISDIKFA-RNG---RHILSRD-YMTLKLWDINMD  372 (408)
Q Consensus       329 --------------~-~~~~-------~~~~~~h~~~i~~~~~s-pdg---~~l~s~~-d~~v~~wd~~~~  372 (408)
                                    . ....       .....+|...|.+++|+ ++|   .+|++|+ ||.|++||+++.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          292 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             -----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             hhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence                          0 0000       22235888999999977 566   8999985 799999999763

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1e-31  Score=242.49  Aligned_cols=275  Identities=11%  Similarity=0.125  Sum_probs=197.9

Q ss_pred             cceeeccceEEEEECCC----C---CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcc
Q 015363           30 EEVQEVDIISAIEFDKS----G---DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE  102 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~----~---~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  102 (408)
                      ....|...|++++|+|+    +   ++|++|+.||.|++|++.++...                  .......+..|...
T Consensus        57 ~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~------------------~~~~~~~~~~~~~~  118 (397)
T 1sq9_A           57 SHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET------------------KKVIFEKLDLLDSD  118 (397)
T ss_dssp             EEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT------------------CCEEEEEECCSCTT
T ss_pred             EEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc------------------ccccceeecccccc
Confidence            34579999999999999    9   99999999999999999876521                  11113456666200


Q ss_pred             cccccccccccceeEEEEeec--CCCcE-EEEEeCCCeEEEEEcCC------CcEEE-----EeccCCCCcccCCCCCeE
Q 015363          103 FDYLKSLEIEEKINKIRWCQS--ANSAL-YLLSTNDKTIKLWKVQE------KKVKK-----VFDWNVHPEKAAGNGPIF  168 (408)
Q Consensus       103 ~~~~~~~~~~~~v~~v~~~p~--~~~~~-l~~~~~d~~i~vwd~~~------~~~~~-----~~~~~~~~~~~~~~~~v~  168 (408)
                      .       ....|.+++|++.  +++.+ |++++.|+.|++||+.+      ++...     .+..... ........+.
T Consensus       119 ~-------~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~  190 (397)
T 1sq9_A          119 M-------KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE-SPMTPSQFAT  190 (397)
T ss_dssp             G-------GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEEC-CSSSSCCCCC
T ss_pred             c-------CCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeec-cccCCCCCce
Confidence            0       0167999999822  34778 99999999999999987      44332     2211000 0000022233


Q ss_pred             eecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccc---c---ccceEEEEeC
Q 015363          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA---H---DYHINSISNN  242 (408)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~v~~i~~~  242 (408)
                             ++.|+|++ .+            ++++.++.|++|| +..      ..+...+ ..   |   ...|.+++|+
T Consensus       191 -------~~~~~~~~-~l------------~~~~~dg~i~i~d-~~~------~~~~~~~-~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          191 -------SVDISERG-LI------------ATGFNNGTVQISE-LST------LRPLYNF-ESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             -------EEEECTTS-EE------------EEECTTSEEEEEE-TTT------TEEEEEE-ECCC---CCCCCEEEEEEC
T ss_pred             -------EEEECCCc-eE------------EEEeCCCcEEEEE-CCC------CceeEEE-eccccccccCCccceEEEC
Confidence                   78999999 76            9999999999999 433      2333333 55   7   8899999999


Q ss_pred             CCCCEEEEe-cC---CeEEEEeCCCCCceeeEeecCCCcccC-------------CcCCeEEEEEcCCCCceEEEEeCCC
Q 015363          243 SDGETFISA-DD---LRINLWNLEISNQSFNIVDVKPANMED-------------LTEVITSAEFHPTHCNMLAYSSSKG  305 (408)
Q Consensus       243 ~~~~~l~~~-~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~~l~s~~~dg  305 (408)
                      |++++|+++ .|   +.|++||+++.. ....       +..             |...|.+++|+|++ .+|++++.|+
T Consensus       243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg  313 (397)
T 1sq9_A          243 PQGSLLAIAHDSNSFGCITLYETEFGE-RIGS-------LSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDG  313 (397)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCC-EEEE-------ECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTS
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCc-ccce-------eccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCC
Confidence            999999999 88   999999999544 3333       344             88999999999999 9999999999


Q ss_pred             eEEEEEcCCCceecccccccc------ccc---CCCCccccccccceeEEEEEccCC----------CEEEEeC-CCeEE
Q 015363          306 SIRLIDMRQSALCDTHSKLFE------EQE---APGTRSFFTEIIASISDIKFARNG----------RHILSRD-YMTLK  365 (408)
Q Consensus       306 ~i~iwd~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~h~~~i~~~~~spdg----------~~l~s~~-d~~v~  365 (408)
                      .|++||+++++..    ..+.      +|.   ..........|...|.+++|+|++          ++|++++ |+.|+
T Consensus       314 ~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~  389 (397)
T 1sq9_A          314 KLRFWDVKTKERI----TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR  389 (397)
T ss_dssp             EEEEEETTTTEEE----EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred             eEEEEEcCCCcee----EEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence            9999999988654    4444      330   001111223347899999999998          7899885 79999


Q ss_pred             EEECCC
Q 015363          366 LWDINM  371 (408)
Q Consensus       366 ~wd~~~  371 (408)
                      +||+++
T Consensus       390 iw~~~~  395 (397)
T 1sq9_A          390 WFREAG  395 (397)
T ss_dssp             EEEEEC
T ss_pred             EEEcCC
Confidence            999986

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-33  Score=255.15  Aligned_cols=258  Identities=10%  Similarity=0.055  Sum_probs=181.7

Q ss_pred             ceeeccceEEEEECCCC---------CeEEE-------------------eecCCeEEEEEeCCCCCCCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSG---------DHLAT-------------------GDRGGRVVLFERTDTRDNGGQRRDLEMMDY   82 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~---------~~l~s-------------------g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   82 (408)
                      ...+.+.|.+|+|+|++         ++||+                   |+.|++|+||++.+++..            
T Consensus       129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------------  196 (524)
T 2j04_B          129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------------  196 (524)
T ss_dssp             EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC------------
T ss_pred             EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC------------
Confidence            34567788888888876         56666                   557889999998776431            


Q ss_pred             cccCCCccceeeeeccCCcccccccccccccceeEEEEeec----CCCcEEEEEeCCCeEEEEEcCCCcEE--EEeccCC
Q 015363           83 SMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS----ANSALYLLSTNDKTIKLWKVQEKKVK--KVFDWNV  156 (408)
Q Consensus        83 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~----~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~  156 (408)
                             ......+.+|.            +.|.+++|+|.    +++.+||+++.||+|++||+.++...  .......
T Consensus       197 -------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~  257 (524)
T 2j04_B          197 -------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK  257 (524)
T ss_dssp             -------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred             -------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence                   11123355666            66999999986    34679999999999999999866421  0000000


Q ss_pred             CC-cccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccc
Q 015363          157 HP-EKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH  235 (408)
Q Consensus       157 ~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (408)
                      .. ......+.+.       +++|++++ .+            ++|+.|++|++|| +....     .+... +.+|...
T Consensus       258 p~~~l~~h~~~v~-------sv~~s~~~-~l------------asgs~DgtV~lWD-~~~~~-----~~~~~-~~~H~~~  310 (524)
T 2j04_B          258 PSLTLSLADSLIT-------TFDFLSPT-TV------------VCGFKNGFVAEFD-LTDPE-----VPSFY-DQVHDSY  310 (524)
T ss_dssp             CSEEECCTTTCEE-------EEEESSSS-EE------------EEEETTSEEEEEE-TTBCS-----SCSEE-EECSSSC
T ss_pred             ceEEEEcCCCCEE-------EEEecCCC-eE------------EEEeCCCEEEEEE-CCCCC-----CceEE-eeccccc
Confidence            00 0001123344       78888764 55            9999999999999 54321     12222 3789999


Q ss_pred             eEEE--EeCCCC-CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCc--CCeEEEEEcCCCCceEEEEeCCCeEEE
Q 015363          236 INSI--SNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSSKGSIRL  309 (408)
Q Consensus       236 v~~i--~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~~~dg~i~i  309 (408)
                      |+++  +|+|++ .+||++ .|++|+|||+++.... ..       +.+|.  ..|.+++|+|++ +.|++++.|++|++
T Consensus       311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~-~~-------~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~l  381 (524)
T 2j04_B          311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT-KT-------TVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRA  381 (524)
T ss_dssp             EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH-CE-------EEEECSCCSCCCEEEETTT-TEEEEECSSSEEEE
T ss_pred             EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc-cc-------cccccccCcccceEeCCCc-CeEEEeCCCCcEEE
Confidence            9999  678887 899999 9999999999844332 22       23343  247889999999 88999999999999


Q ss_pred             EEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      ||++++...    ..+.+|            .+.|.+++|+|+|++|++|+ |++|++||+..
T Consensus       382 wd~~~~~~~----~~l~gH------------~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          382 VPSRAAFAV----HPLVSR------------ETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EETTCTTCC----EEEEEC------------SSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             EECcccccc----eeeecC------------CCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            999987543    444555            57899999999999999985 79999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-31  Score=248.39  Aligned_cols=269  Identities=8%  Similarity=0.000  Sum_probs=187.4

Q ss_pred             eeeccceEEEEECCC------CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccc
Q 015363           32 VQEVDIISAIEFDKS------GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY  105 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~------~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  105 (408)
                      ..|.+.|.+++|+|+      +.+||+|+.||+|+|||+.++.....  ...         . .......+.+|.     
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~--~~~---------~-~~~p~~~l~~h~-----  266 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH--VFK---------M-CEKPSLTLSLAD-----  266 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS--EEE---------C-CCSCSEEECCTT-----
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc--cce---------e-ecCceEEEEcCC-----
Confidence            346789999999997      57999999999999999976542100  000         0 001223567777     


Q ss_pred             ccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCCCCeEeecCCceee--EEccC
Q 015363          106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPK--SYMAN  182 (408)
Q Consensus       106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~  182 (408)
                             ..|++++|+|.   ..|++|+.||+|++||++++. ....+..+.        +.|.       ++  .++|+
T Consensus       267 -------~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~--------~~V~-------sv~~~~s~~  321 (524)
T 2j04_B          267 -------SLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHD--------SYIL-------SVSTAYSDF  321 (524)
T ss_dssp             -------TCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSS--------SCEE-------EEEEECCTT
T ss_pred             -------CCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeeccc--------ccEE-------EEEEEcCCC
Confidence                   77999999753   389999999999999998763 233333332        2344       45  56788


Q ss_pred             C-CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccc--cceEEEEeCCCCCEEEEe-cCCeEEE
Q 015363          183 G-GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD--YHINSISNNSDGETFISA-DDLRINL  258 (408)
Q Consensus       183 ~-~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~-~d~~i~i  258 (408)
                      + ..+            ++++.|++|++|| +..      ..+...+ .+|.  ..|.+++|+|++..|+++ .|++|++
T Consensus       322 g~~~l------------aS~S~D~tvklWD-~~~------~~~~~~~-~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l  381 (524)
T 2j04_B          322 EDTVV------------STVAVDGYFYIFN-PKD------IATTKTT-VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA  381 (524)
T ss_dssp             SCCEE------------EEEETTSEEEEEC-GGG------HHHHCEE-EEECSCCSCCCEEEETTTTEEEEECSSSEEEE
T ss_pred             CCeEE------------EEeccCCeEEEEE-CCC------CCccccc-ccccccCcccceEeCCCcCeEEEeCCCCcEEE
Confidence            7 666            9999999999999 543      2222222 3443  247899999999999998 8999999


Q ss_pred             EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceec-c---------cccccccc
Q 015363          259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD-T---------HSKLFEEQ  328 (408)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-~---------~~~~~~~~  328 (408)
                      ||++... +...       +.+|...|++++|+|++ .+|++|+.|++|++||+....... +         .+..+.-.
T Consensus       382 wd~~~~~-~~~~-------l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~s  452 (524)
T 2j04_B          382 VPSRAAF-AVHP-------LVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYS  452 (524)
T ss_dssp             EETTCTT-CCEE-------EEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCC
T ss_pred             EECcccc-ccee-------eecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccC
Confidence            9999544 3222       56799999999999999 899999999999999976431110 0         00001000


Q ss_pred             c------------------CCCCccccccccceeEEEEEccCCC---EEEEeC-CCeEEEEECCC
Q 015363          329 E------------------APGTRSFFTEIIASISDIKFARNGR---HILSRD-YMTLKLWDINM  371 (408)
Q Consensus       329 ~------------------~~~~~~~~~~h~~~i~~~~~spdg~---~l~s~~-d~~v~~wd~~~  371 (408)
                      .                  .......+.+|...|.+++|+|++.   +||+|+ +|.|+||+++-
T Consensus       453 p~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          453 IKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             SSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            0                  0123345678999999999999954   999996 59999999975

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2e-31  Score=239.40  Aligned_cols=253  Identities=12%  Similarity=0.092  Sum_probs=186.3

Q ss_pred             eeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           33 QEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        33 ~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      +|.+.|.+++|+| ++++|++|+.|+.|++||+.+...                     .......+|.           
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------------------~~~~~~~~~~-----------  163 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI---------------------QVFAKTDSWD-----------  163 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE---------------------EEEECCCCSS-----------
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce---------------------EEEeccCCCC-----------
Confidence            5999999999999 689999999999999999875321                     1111122333           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC-eeeccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG-CGERNF  190 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~~  190 (408)
                       ..|.+++|+|+  +.+|++++.|+.|++||+. ++....+..+.        +.+.       +++|+|+++ .+    
T Consensus       164 -~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~--------~~v~-------~~~~~~~~~~~l----  220 (383)
T 3ei3_B          164 -YWYCCVDVSVS--RQMLATGDSTGRLLLLGLD-GHEIFKEKLHK--------AKVT-------HAEFNPRCDWLM----  220 (383)
T ss_dssp             -CCEEEEEEETT--TTEEEEEETTSEEEEEETT-SCEEEEEECSS--------SCEE-------EEEECSSCTTEE----
T ss_pred             -CCeEEEEECCC--CCEEEEECCCCCEEEEECC-CCEEEEeccCC--------CcEE-------EEEECCCCCCEE----
Confidence             66999999765  7899999999999999995 55555554432        2344       789999998 66    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                              ++++.|+.|++|| +.....  ...+...  .+|...|++++|+| ++.+|+++ .|+.|++||+++.....
T Consensus       221 --------~s~~~d~~i~iwd-~~~~~~--~~~~~~~--~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~  287 (383)
T 3ei3_B          221 --------ATSSVDATVKLWD-LRNIKD--KNSYIAE--MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD  287 (383)
T ss_dssp             --------EEEETTSEEEEEE-GGGCCS--TTCEEEE--EECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred             --------EEEeCCCEEEEEe-CCCCCc--ccceEEE--ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence                    9999999999999 543221  1222333  36889999999999 99999999 89999999999655433


Q ss_pred             eEeecCCCcccCCc----------CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc
Q 015363          269 NIVDVKPANMEDLT----------EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT  338 (408)
Q Consensus       269 ~~~~~~~~~~~~~~----------~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (408)
                      .+.. .......|.          ..+..++|+|++ ++  +++.|+.|++||+++++.+    ..+.++.         
T Consensus       288 ~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~~----~~l~~~~---------  350 (383)
T 3ei3_B          288 QIII-HPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGLV----HQLRDPN---------  350 (383)
T ss_dssp             EEEE-CCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCEE----EEECBTT---------
T ss_pred             cccc-ccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCcee----eeecCCC---------
Confidence            3221 111111222          334456777777 55  7778999999999998654    5555431         


Q ss_pred             cccceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363          339 EIIASISDIKFARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       339 ~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~  371 (408)
                       |...+..++|+|++++|++|+|+.|++||+++
T Consensus       351 -~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~  382 (383)
T 3ei3_B          351 -AAGIISLNKFSPTGDVLASGMGFNILIWNRED  382 (383)
T ss_dssp             -BCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred             -CCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence             23567788999999999999999999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.7e-30  Score=229.42  Aligned_cols=272  Identities=14%  Similarity=0.242  Sum_probs=193.9

Q ss_pred             CcccceeeecccCcC--cccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcc
Q 015363           13 QPLEWKFSQVFGERT--AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (408)
Q Consensus        13 ~~~~w~~~~~~~~~~--~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~   90 (408)
                      .-..|++........  .....+|.+.|++++|+|++++|++|+.|+.|++|+......                     
T Consensus        62 ~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~---------------------  120 (340)
T 4aow_A           62 TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT---------------------  120 (340)
T ss_dssp             CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------
T ss_pred             eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce---------------------
Confidence            345688765211110  112346899999999999999999999999999999876542                     


Q ss_pred             ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEee
Q 015363           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (408)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  170 (408)
                        ......+.            ..+..+.++|  ++.+|++++.|+.+++||+........... .+      ...+.  
T Consensus       121 --~~~~~~~~------------~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~-~~------~~~v~--  175 (340)
T 4aow_A          121 --TRRFVGHT------------KDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDE-SH------SEWVS--  175 (340)
T ss_dssp             --EEEEECCS------------SCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSS-SC------SSCEE--
T ss_pred             --eeeecCCC------------CceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEec-cc------cCccc--
Confidence              23344444            5577788854  477999999999999999987654332211 11      12232  


Q ss_pred             cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE
Q 015363          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS  250 (408)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~  250 (408)
                           .+.+++++...          ++++++.|+.|++|| +..      ..+...+ .+|...|++++|+|++++|++
T Consensus       176 -----~~~~~~~~~~~----------~~~s~~~d~~i~i~d-~~~------~~~~~~~-~~h~~~v~~~~~s~~~~~l~s  232 (340)
T 4aow_A          176 -----CVRFSPNSSNP----------IIVSCGWDKLVKVWN-LAN------CKLKTNH-IGHTGYLNTVTVSPDGSLCAS  232 (340)
T ss_dssp             -----EEEECSCSSSC----------EEEEEETTSCEEEEE-TTT------TEEEEEE-CCCSSCEEEEEECTTSSEEEE
T ss_pred             -----ceEEccCCCCc----------EEEEEcCCCEEEEEE-CCC------CceeeEe-cCCCCcEEEEEECCCCCEEEE
Confidence                 46676665432          237889999999999 433      2333343 789999999999999999999


Q ss_pred             e-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccccc
Q 015363          251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE  329 (408)
Q Consensus       251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  329 (408)
                      | .|+.|++||++.. ..+..       +. +...+.++.|+|++ . +++++.|+.|++||++++...    ..+..+ 
T Consensus       233 ~s~Dg~i~iwd~~~~-~~~~~-------~~-~~~~v~~~~~~~~~-~-~~~~~~d~~i~iwd~~~~~~~----~~~~~~-  296 (340)
T 4aow_A          233 GGKDGQAMLWDLNEG-KHLYT-------LD-GGDIINALCFSPNR-Y-WLCAATGPSIKIWDLEGKIIV----DELKQE-  296 (340)
T ss_dssp             EETTCEEEEEETTTT-EEEEE-------EE-CSSCEEEEEECSSS-S-EEEEEETTEEEEEETTTTEEE----EEECCC-
T ss_pred             EeCCCeEEEEEeccC-ceeee-------ec-CCceEEeeecCCCC-c-eeeccCCCEEEEEECCCCeEE----Eecccc-
Confidence            9 9999999999944 34333       22 35679999999997 5 556667999999999987543    222222 


Q ss_pred             CCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       330 ~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                        .......+|...|++++|+|||++|++|+ |+.|++||+++
T Consensus       297 --~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          297 --VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             ---------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             --ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence              11222456778999999999999999985 79999999987

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-30  Score=227.15  Aligned_cols=262  Identities=13%  Similarity=0.179  Sum_probs=198.3

Q ss_pred             cccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcccee
Q 015363           14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK   93 (408)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~   93 (408)
                      -..|++...   ........|.+.|.+++|+|++++|++|+.||.|++|++.....                    .+..
T Consensus        41 v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~--------------------~~~~   97 (313)
T 3odt_A           41 VRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG--------------------EDPL   97 (313)
T ss_dssp             EEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT--------------------SCC-
T ss_pred             EEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC--------------------CCcc
Confidence            445666431   11223456899999999999999999999999999999876532                    1234


Q ss_pred             eeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCC
Q 015363           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS  173 (408)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  173 (408)
                      ..+.+|.            ..|.++.|  +  +.++++++.|+.|++||  .++....+..+..        .+.     
T Consensus        98 ~~~~~~~------------~~i~~~~~--~--~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~--------~v~-----  146 (313)
T 3odt_A           98 YTLIGHQ------------GNVCSLSF--Q--DGVVISGSWDKTAKVWK--EGSLVYNLQAHNA--------SVW-----  146 (313)
T ss_dssp             CEECCCS------------SCEEEEEE--E--TTEEEEEETTSEEEEEE--TTEEEEEEECCSS--------CEE-----
T ss_pred             cchhhcc------------cCEEEEEe--c--CCEEEEEeCCCCEEEEc--CCcEEEecccCCC--------cee-----
Confidence            5677787            77999999  3  55999999999999999  4555555444322        233     


Q ss_pred             ceeeEEcc-CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-
Q 015363          174 AIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  251 (408)
Q Consensus       174 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-  251 (408)
                        .+.+.| ++..+            ++++.++.|++|| .        ......+...|...+.+++|+|++. ++++ 
T Consensus       147 --~~~~~~~~~~~l------------~~~~~d~~i~i~d-~--------~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~  202 (313)
T 3odt_A          147 --DAKVVSFSENKF------------LTASADKTIKLWQ-N--------DKVIKTFSGIHNDVVRHLAVVDDGH-FISCS  202 (313)
T ss_dssp             --EEEEEETTTTEE------------EEEETTSCEEEEE-T--------TEEEEEECSSCSSCEEEEEEEETTE-EEEEE
T ss_pred             --EEEEccCCCCEE------------EEEECCCCEEEEe-c--------CceEEEEeccCcccEEEEEEcCCCe-EEEcc
Confidence              577777 77776            9999999999999 2        1222333234888999999999998 7777 


Q ss_pred             cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363          252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  331 (408)
Q Consensus       252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  331 (408)
                      .|+.|++||+++.. ....       +..|...|++++|+|++ . |++++.|+.|++||+++++..    ..+..|   
T Consensus       203 ~dg~i~i~d~~~~~-~~~~-------~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~~~----~~~~~~---  265 (313)
T 3odt_A          203 NDGLIKLVDMHTGD-VLRT-------YEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENGSLK----QVITLP---  265 (313)
T ss_dssp             TTSEEEEEETTTCC-EEEE-------EECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTTCCEE----EEEECS---
T ss_pred             CCCeEEEEECCchh-hhhh-------hhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCCCcee----EEEecc---
Confidence            99999999999544 4333       56789999999999998 4 889999999999999998654    555555   


Q ss_pred             CCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeee
Q 015363          332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~  380 (408)
                               ...|.+++|+|++++++++.|+.|++||+++ ++.+....
T Consensus       266 ---------~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~-~~~~~~~~  304 (313)
T 3odt_A          266 ---------AISIWSVDCMSNGDIIVGSSDNLVRIFSQEK-SRWASEDE  304 (313)
T ss_dssp             ---------SSCEEEEEECTTSCEEEEETTSCEEEEESCG-GGCCC---
T ss_pred             ---------CceEEEEEEccCCCEEEEeCCCcEEEEeCCC-Cceeehhh
Confidence                     4689999999999977666789999999987 45554443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.8e-30  Score=231.68  Aligned_cols=285  Identities=14%  Similarity=0.198  Sum_probs=208.2

Q ss_pred             ceeeccceEEEEECCC---CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           31 EVQEVDIISAIEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~---~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      ...|.+.|++++|+|+   |++|++|+.||.|+||++.+...                     .....+.+|.       
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~-------   86 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------------------TIPKAQQMHT-------   86 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------------------EEEEEEEECS-------
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------------------eeEEEecccc-------
Confidence            3579999999999999   69999999999999999986321                     1235677888       


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEE--ccCCCe
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY--MANGGC  185 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~  185 (408)
                           ..|++++|+|  ++.+|++++.|+.|++||+.+++.......         .+.+.       ++.|  ++++..
T Consensus        87 -----~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---------~~~v~-------~~~~~~~~~~~~  143 (368)
T 3mmy_A           87 -----GPVLDVCWSD--DGSKVFTASCDKTAKMWDLSSNQAIQIAQH---------DAPVK-------TIHWIKAPNYSC  143 (368)
T ss_dssp             -----SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEEC---------SSCEE-------EEEEEECSSCEE
T ss_pred             -----CCEEEEEECc--CCCEEEEEcCCCcEEEEEcCCCCceeeccc---------cCceE-------EEEEEeCCCCCE
Confidence                 7799999975  488999999999999999999987664432         22344       6788  888888


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCC
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS  264 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~  264 (408)
                      +            ++++.|+.|++|| +...      ++...+ ..+ ..+.++.+.+  ..++++ .++.+.+|+++..
T Consensus       144 l------------~~~~~dg~i~vwd-~~~~------~~~~~~-~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~  200 (368)
T 3mmy_A          144 V------------MTGSWDKTLKFWD-TRSS------NPMMVL-QLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQ  200 (368)
T ss_dssp             E------------EEEETTSEEEEEC-SSCS------SCSEEE-ECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSS
T ss_pred             E------------EEccCCCcEEEEE-CCCC------cEEEEE-ecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccc
Confidence            7            9999999999999 5432      222332 333 3455666554  466776 8999999999965


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCce----EEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNM----LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      .......      ...+...+.++.+.++. ..    +++++.|+.|++||++..... ..+..+.+|..........+|
T Consensus       201 ~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  272 (368)
T 3mmy_A          201 PSEFRRI------ESPLKHQHRCVAIFKDK-QNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQD  272 (368)
T ss_dssp             CEEEEEC------CCSCSSCEEEEEEEECT-TSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEE
T ss_pred             cchhhhc------cccccCCCceEEEcccC-CCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeeeccccccccccc
Confidence            5544432      12234445666666555 33    999999999999999887321 222455555432222233444


Q ss_pred             cceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeee
Q 015363          341 IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM  398 (408)
Q Consensus       341 ~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (408)
                      ...|.+++|+|++++|++++ |+.|++||+++ ++++..+.+|......+....++..+
T Consensus       273 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l  330 (368)
T 3mmy_A          273 IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA-RTKLKTSEQLDQPISACCFNHNGNIF  330 (368)
T ss_dssp             ECCEEEEEECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSSCEEEEEECTTSSCE
T ss_pred             ccceEEEEEecCCCEEEEEccCCeEEEEECCC-CcEEEEecCCCCCceEEEECCCCCeE
Confidence            45799999999999999985 79999999997 79999999998887777655555544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4e-31  Score=240.95  Aligned_cols=274  Identities=16%  Similarity=0.219  Sum_probs=199.5

Q ss_pred             cceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ....|.+.|++++|+|+ +.+||+|+.+|.|+||++.......             ...........+.+|.        
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~-------------~~~~~~~~~~~~~~h~--------  181 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP-------------EPSGECQPDLRLRGHQ--------  181 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC-------------CTTCCCCCSEEEECCS--------
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc-------------CccccCCCcEEecCCC--------
Confidence            34679999999999997 7899999999999999987632110             0001233456778888        


Q ss_pred             cccccceeEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcE-------EEEeccCCCCcccCCCCCeEeecCCceeeEEc
Q 015363          109 LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKV-------KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM  180 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  180 (408)
                          ..|.+++|+|.  +. +|++++.||.|++|++.++..       ...+..+        .+.+.       .++|+
T Consensus       182 ----~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h--------~~~v~-------~v~~~  240 (430)
T 2xyi_A          182 ----KEGYGLSWNPN--LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH--------TAVVE-------DVAWH  240 (430)
T ss_dssp             ----SCCCCEEECTT--STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCC--------SSCEE-------EEEEC
T ss_pred             ----CCeEEEEeCCC--CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCC--------CCCEe-------eeEEe
Confidence                77999999765  55 999999999999999987321       1111111        22344       78999


Q ss_pred             cC-CCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEE
Q 015363          181 AN-GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRIN  257 (408)
Q Consensus       181 ~~-~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~  257 (408)
                      |+ +..+            ++++.++.|++|| +.....   ..+...+ ..|...|++++|+|++. +|++| .|+.|+
T Consensus       241 p~~~~~l------------~s~~~dg~i~i~d-~~~~~~---~~~~~~~-~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~  303 (430)
T 2xyi_A          241 LLHESLF------------GSVADDQKLMIWD-TRNNNT---SKPSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVA  303 (430)
T ss_dssp             SSCTTEE------------EEEETTSEEEEEE-TTCSCS---SSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             CCCCCEE------------EEEeCCCeEEEEE-CCCCCC---CcceeEe-ecCCCCeEEEEeCCCCCCEEEEEeCCCeEE
Confidence            94 5554            8899999999999 543221   1233333 68889999999999987 67788 899999


Q ss_pred             EEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccc
Q 015363          258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF  337 (408)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (408)
                      +||++.....+..       +..|...|++++|+|++..+|++++.|+.|++||++........  .-.....+.....+
T Consensus       304 vwd~~~~~~~~~~-------~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~  374 (430)
T 2xyi_A          304 LWDLRNLKLKLHS-------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST--EDAEDGPPELLFIH  374 (430)
T ss_dssp             EEETTCTTSCSEE-------EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH--HHHHHCCTTEEEEC
T ss_pred             EEeCCCCCCCeEE-------eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc--cccccCCcceEEEc
Confidence            9999965554443       56789999999999999668999999999999999874321000  00000011222334


Q ss_pred             ccccceeEEEEEccCCC-EEEEeC-CCeEEEEECCC
Q 015363          338 TEIIASISDIKFARNGR-HILSRD-YMTLKLWDINM  371 (408)
Q Consensus       338 ~~h~~~i~~~~~spdg~-~l~s~~-d~~v~~wd~~~  371 (408)
                      .+|...|.+++|+|++. +|++++ |+.|++|++..
T Consensus       375 ~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          375 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            56678899999999999 788875 69999999974

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.7e-30  Score=246.51  Aligned_cols=259  Identities=14%  Similarity=0.180  Sum_probs=203.9

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|.+.|++++|+|+|++||+++ ++.|+||++.++..                   ..+....+.+|.          
T Consensus        14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-------------------~~~~~~~~~~h~----------   63 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-------------------KVPPVVQFTGHG----------   63 (615)
T ss_dssp             CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-------------------SSCSEEEECTTT----------
T ss_pred             CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-------------------ccccceEEecCC----------
Confidence            346899999999999999999998 78999999986511                   012356788888          


Q ss_pred             cccc-eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC--------cEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc
Q 015363          111 IEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEK--------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA  181 (408)
Q Consensus       111 ~~~~-v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  181 (408)
                        .. |++++|+|..++++|++++.||.|++||+.++        +....+..+        .+.+.       .++|+|
T Consensus        64 --~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~--------~~~v~-------~~~~s~  126 (615)
T 1pgu_A           64 --SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL--------AGPIS-------DISWDF  126 (615)
T ss_dssp             --TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC--------SSCEE-------EEEECT
T ss_pred             --CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc--------cccEE-------EEEEeC
Confidence              88 99999976215889999999999999999755        333333322        22344       789999


Q ss_pred             CCCeeecccccccCccccCCCCC----ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCe
Q 015363          182 NGGCGERNFGCASNDSSFPPGGV----SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLR  255 (408)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~  255 (408)
                      +++.+            ++++.+    +.|.+|+ .        ...... +.+|...|.+++|+|+++ .++++ .|+.
T Consensus       127 ~~~~l------------~~~~~~~~~~~~v~~~d-~--------~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  184 (615)
T 1pgu_A          127 EGRRL------------CVVGEGRDNFGVFISWD-S--------GNSLGE-VSGHSQRINACHLKQSRPMRSMTVGDDGS  184 (615)
T ss_dssp             TSSEE------------EEEECCSSCSEEEEETT-T--------CCEEEE-CCSCSSCEEEEEECSSSSCEEEEEETTTE
T ss_pred             CCCEE------------EEeccCCCCccEEEEEE-C--------CCccee-eecCCccEEEEEECCCCCcEEEEEeCCCc
Confidence            99987            777666    7899988 2        122333 378999999999999997 78888 9999


Q ss_pred             EEEEeCCCCCceeeEeecCCCcccCCcC---CeEEEEEcCC-CCceEEEEeCCCeEEEEEcCCCceeccccccc-ccccC
Q 015363          256 INLWNLEISNQSFNIVDVKPANMEDLTE---VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF-EEQEA  330 (408)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~  330 (408)
                      |++||+.. .+....       +..|..   .|++++|+|+ + ++|++++.|+.|++||+++++..    ..+ ..   
T Consensus       185 v~vwd~~~-~~~~~~-------~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~---  248 (615)
T 1pgu_A          185 VVFYQGPP-FKFSAS-------DRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFL----KYIEDD---  248 (615)
T ss_dssp             EEEEETTT-BEEEEE-------ECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEE----EECCBT---
T ss_pred             EEEEeCCC-cceeee-------ecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEe----EEeccc---
Confidence            99999984 344333       567888   8999999999 8 99999999999999999988654    444 20   


Q ss_pred             CCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363          331 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                            ..+|...|.+++|+ ++++|++++ |+.|++||+++ ++.+..+..+
T Consensus       249 ------~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~  293 (615)
T 1pgu_A          249 ------QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLD  293 (615)
T ss_dssp             ------TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECC
T ss_pred             ------ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCC
Confidence                  00235789999999 999999985 79999999997 7888888877

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.8e-30  Score=223.77  Aligned_cols=275  Identities=15%  Similarity=0.209  Sum_probs=205.5

Q ss_pred             eEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeE
Q 015363           38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK  117 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  117 (408)
                      +++|+||+++ +||+| .|++|+|||+.+++..                     ....+.+|.            ..|++
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~---------------------~~~~~~~~~------------~~V~~   72 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYISS   72 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE---------------------EEEEecCCC------------CeEEE
Confidence            5789999886 77776 4899999999887531                     112234555            67999


Q ss_pred             EEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCcc
Q 015363          118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS  197 (408)
Q Consensus       118 v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (408)
                      ++|+|+  +++|++|+.|++|++|++++++.......+...                 ...+++++..+           
T Consensus        73 v~~~~~--~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~-----------------~~~~~~~~~~l-----------  122 (318)
T 4ggc_A           73 VAWIKE--GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-----------------VGSLSWNSYIL-----------  122 (318)
T ss_dssp             EEECTT--SSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-----------------EEEEEEETTEE-----------
T ss_pred             EEECCC--CCEEEEEECCCcEEEeecCCceeEEEecCccce-----------------EEEeecCCCEE-----------
Confidence            999754  889999999999999999999988877765433                 34566667766           


Q ss_pred             ccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCC
Q 015363          198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA  276 (408)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  276 (408)
                       ++++.++.+++|+ ....     ...... ..+|...+..+++++++++|+++ .|+.|++||+++.+......    .
T Consensus       123 -~s~~~~~~~~~~~-~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~  190 (318)
T 4ggc_A          123 -SSGSRSGHIHHHD-VRVA-----EHHVAT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----Q  190 (318)
T ss_dssp             -EEEETTSEEEEEE-TTSS-----SCEEEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----E
T ss_pred             -EEEecCCceEeee-cCCC-----ceeEEE-EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----e
Confidence             8999999999988 3221     112222 37888999999999999999999 99999999998554322111    1


Q ss_pred             cccCCcCCeEEEEEcCCCCceE--EEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363          277 NMEDLTEVITSAEFHPTHCNML--AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       277 ~~~~~~~~v~~~~~~p~~~~~l--~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                      ....+...|.++.++|++..++  ++++.++.|++||.+.....    .... +            ...+..+.|+|++.
T Consensus       191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----~~~~-~------------~~~v~~~~~~~~~~  253 (318)
T 4ggc_A          191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVD-A------------HSQVCSILWSPHYK  253 (318)
T ss_dssp             EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----EEEE-C------------SSCEEEEEEETTTT
T ss_pred             eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc----cccc-c------------eeeeeeeeeccccc
Confidence            1455778899999999885555  35567899999999887543    2222 2            25789999999999


Q ss_pred             EEEEe---CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee---eeceeeec
Q 015363          355 HILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG---LDNIHTLY  407 (408)
Q Consensus       355 ~l~s~---~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~  407 (408)
                      .++++   .|+.|++||+++ +++++++.+|......+....++..++   .|...+||
T Consensus       254 ~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          254 ELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             EEEEEECTTTCCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             ceEEEEEcCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            88764   369999999998 799999999999887777555555442   35555554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.9e-30  Score=265.40  Aligned_cols=251  Identities=15%  Similarity=0.266  Sum_probs=189.9

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++|+|+|++||+|+.||+|+|||+.+++                       .+..+.+|.          
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-----------------------~~~~~~~h~----------  657 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-----------------------KLLDIKAHE----------  657 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----------------------EEEEeccCC----------
Confidence            34799999999999999999999999999999998765                       346778888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|.+++|+|+  +.++++++.|++|++||+.+++....+..+..        .+.       ++.|+|++...    
T Consensus       658 --~~v~~~~~s~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--------~v~-------~~~~~~~~~~~----  714 (1249)
T 3sfz_A          658 --DEVLCCAFSSD--DSYIATCSADKKVKIWDSATGKLVHTYDEHSE--------QVN-------CCHFTNKSNHL----  714 (1249)
T ss_dssp             --SCEEEEEECTT--SSEEEEEETTSEEEEEETTTCCEEEEEECCSS--------CEE-------EEEECSSSSCC----
T ss_pred             --CCEEEEEEecC--CCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--------cEE-------EEEEecCCCce----
Confidence              77999999755  88999999999999999999988887766532        344       68898854321    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                            ++++++.|+.|++|| +..      ..+...+ .+|...|++++|+|++++|+++ .|+.|++||+..... ..
T Consensus       715 ------~l~sg~~d~~v~vwd-~~~------~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~-~~  779 (1249)
T 3sfz_A          715 ------LLATGSNDFFLKLWD-LNQ------KECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE-RK  779 (1249)
T ss_dssp             ------EEEEEETTSCEEEEE-TTS------SSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE-EE
T ss_pred             ------EEEEEeCCCeEEEEE-CCC------cchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc-cc
Confidence                  138899999999999 433      3344443 7899999999999999999999 999999999984432 22


Q ss_pred             EeecCC------------------------------------------------CcccCCcCCeEEEEEcCCCCceEEEE
Q 015363          270 IVDVKP------------------------------------------------ANMEDLTEVITSAEFHPTHCNMLAYS  301 (408)
Q Consensus       270 ~~~~~~------------------------------------------------~~~~~~~~~v~~~~~~p~~~~~l~s~  301 (408)
                      .+....                                                ....+|...+.+++|+|++ .+++++
T Consensus       780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~  858 (1249)
T 3sfz_A          780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIA  858 (1249)
T ss_dssp             EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEE
T ss_pred             eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEE
Confidence            111100                                                0012677889999999999 999999


Q ss_pred             eCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363          302 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       302 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~  369 (408)
                      +.|+.|++||+.++...    ..+.+|            ...|.+++|+|+|++|++++ |+.|++||+
T Consensus       859 ~~dg~v~vwd~~~~~~~----~~~~~h------------~~~v~~v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          859 LSQYCVELWNIDSRLKV----ADCRGH------------LSWVHGVMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             CSSSCEEEEETTTTEEE----EEECCC------------SSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred             eCCCeEEEEEcCCCcee----eecCCC------------ccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            99999999999987543    444444            34455555555555555543 455555553

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-31  Score=238.48  Aligned_cols=283  Identities=10%  Similarity=0.101  Sum_probs=190.7

Q ss_pred             CcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363           13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (408)
Q Consensus        13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   92 (408)
                      .-..|+....- .........|.+.|++++|+|++++|++|+.||.|+|||+.++..                    ...
T Consensus        34 ~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~--------------------~~~   92 (377)
T 3dwl_C           34 QVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT--------------------WKQ   92 (377)
T ss_dssp             CBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C--------------------CCC
T ss_pred             EEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc--------------------eee
Confidence            45567776410 012223457999999999999999999999999999999987641                    112


Q ss_pred             eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE---EEEecc-CCCCcccCCCCCeE
Q 015363           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDW-NVHPEKAAGNGPIF  168 (408)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~-~~~~~~~~~~~~v~  168 (408)
                      ...+.+|.            ..|.+++|+|+  +.+|++++.|+.|++||+++++.   ...+.. +        .+.+.
T Consensus        93 ~~~~~~~~------------~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h--------~~~v~  150 (377)
T 3dwl_C           93 TLVLLRLN------------RAATFVRWSPN--EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL--------RSTIL  150 (377)
T ss_dssp             EEECCCCS------------SCEEEEECCTT--SSCCEEEESSSCEEECCC-----CCCCEEECSSC--------CSCEE
T ss_pred             eeEecccC------------CceEEEEECCC--CCEEEEEecCCeEEEEEECCcccceeeeEeeccc--------CCCeE
Confidence            34566777            77999999764  88999999999999999998762   333332 2        23344


Q ss_pred             eecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccc------------cccccceeeccccccce
Q 015363          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN------------LVAGCRRIYAHAHDYHI  236 (408)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~v  236 (408)
                             +++|+|+++.+            ++++.|+.|++|| +......            ....+...+  .|...|
T Consensus       151 -------~~~~~~~~~~l------------~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v  208 (377)
T 3dwl_C          151 -------SLDWHPNNVLL------------AAGCADRKAYVLS-AYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWV  208 (377)
T ss_dssp             -------EEEECTTSSEE------------EEEESSSCEEEEE-ECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSE
T ss_pred             -------EEEEcCCCCEE------------EEEeCCCEEEEEE-EEecccCCCccccccccccchhhhhhcc--cCCceE
Confidence                   78999999987            9999999999999 5422111            112333333  888999


Q ss_pred             EEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          237 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       237 ~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                      ++++|+|++++|+++ .|+.|++||+++.......+    ..+..|...|.+++|+|++ ++|++++.++.+ +|+....
T Consensus       209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~  282 (377)
T 3dwl_C          209 HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL----ITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNES  282 (377)
T ss_dssp             EEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC----CCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC-
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee----EeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCC
Confidence            999999999999999 99999999999655422111    2367899999999999999 899988766665 6666532


Q ss_pred             c-eecccccccccccCC--------------------------------------CCccccccccceeEEEEEccCC-C-
Q 015363          316 A-LCDTHSKLFEEQEAP--------------------------------------GTRSFFTEIIASISDIKFARNG-R-  354 (408)
Q Consensus       316 ~-~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~h~~~i~~~~~spdg-~-  354 (408)
                      . .+.   ..+......                                      ........|...|.++++.+.. . 
T Consensus       283 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~  359 (377)
T 3dwl_C          283 GWAHT---RDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGN  359 (377)
T ss_dssp             --CCS---BCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTE
T ss_pred             ceEEE---eeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCc
Confidence            2 110   111100000                                      0111223488999999977643 3 


Q ss_pred             --EEEEe-CCCeEEEEEC
Q 015363          355 --HILSR-DYMTLKLWDI  369 (408)
Q Consensus       355 --~l~s~-~d~~v~~wd~  369 (408)
                        .|+|| .||.|++||+
T Consensus       360 ~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          360 ITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEEEEEETTSEEEEECC
T ss_pred             eEEEEeecCCCcEEEecC
Confidence              57777 5899999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.7e-30  Score=233.41  Aligned_cols=260  Identities=11%  Similarity=0.205  Sum_probs=198.0

Q ss_pred             eEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeecc-CCccccccccccccccee
Q 015363           38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEIEEKIN  116 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~~~~~~v~  116 (408)
                      +.+++|++  ..+++++.||.|+||++.++..                       ...+.. |.            ..|.
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~-----------------------~~~~~~~~~------------~~v~  138 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNADSGSV-----------------------SALAETDES------------TYVA  138 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETTTCCE-----------------------EEEEECCTT------------CCEE
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCCCCcE-----------------------eEeeecCCC------------CCEE
Confidence            55577765  5588889999999999987753                       222332 55            7799


Q ss_pred             EEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCc
Q 015363          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND  196 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (408)
                      +++|+|  ++.+|++++.||.|++||+.+++....+..+..        .+.       ++.|  ++..+          
T Consensus       139 ~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~-------~~~~--~~~~l----------  189 (401)
T 4aez_A          139 SVKWSH--DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA--------RVG-------CLSW--NRHVL----------  189 (401)
T ss_dssp             EEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSS--------CEE-------EEEE--ETTEE----------
T ss_pred             EEEECC--CCCEEEEECCCCeEEEEECcCCeEEEEecCCCC--------ceE-------EEEE--CCCEE----------
Confidence            999975  488999999999999999999988777765432        333       4666  45565          


Q ss_pred             cccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCC
Q 015363          197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP  275 (408)
Q Consensus       197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  275 (408)
                        ++++.++.|++|| +...     ...... ..+|...|.+++|+|++++|+++ .|+.|++||+++......      
T Consensus       190 --~~~~~dg~i~i~d-~~~~-----~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~------  254 (401)
T 4aez_A          190 --SSGSRSGAIHHHD-VRIA-----NHQIGT-LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT------  254 (401)
T ss_dssp             --EEEETTSEEEEEE-TTSS-----SCEEEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE------
T ss_pred             --EEEcCCCCEEEEe-cccC-----cceeeE-EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE------
Confidence              9999999999999 5321     122233 37889999999999999999999 899999999995443322      


Q ss_pred             CcccCCcCCeEEEEEcCCCCceEEEEe--CCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC
Q 015363          276 ANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  353 (408)
Q Consensus       276 ~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg  353 (408)
                        +..|...|.+++|+|++..++++++  .|+.|++||+++++..    ..+..+             ..|.+++|+|++
T Consensus       255 --~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~~~-------------~~v~~~~~s~~~  315 (401)
T 4aez_A          255 --KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVDAG-------------SQVTSLIWSPHS  315 (401)
T ss_dssp             --ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEECS-------------SCEEEEEECSSS
T ss_pred             --ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEeCC-------------CcEEEEEECCCC
Confidence              4678899999999998867888876  7999999999988654    444333             579999999999


Q ss_pred             CEEEE--e-CCCeEEEEECCCCCCceee--eeecccccceEEecCCCeee
Q 015363          354 RHILS--R-DYMTLKLWDINMDSGPVAT--FQVHEHLRPKVMHSSKNYFM  398 (408)
Q Consensus       354 ~~l~s--~-~d~~v~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  398 (408)
                      ++|++  | .|+.|++||+.+ ++....  +.+|......+....++..+
T Consensus       316 ~~l~~~~g~~dg~i~v~~~~~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l  364 (401)
T 4aez_A          316 KEIMSTHGFPDNNLSIWSYSS-SGLTKQVDIPAHDTRVLYSALSPDGRIL  364 (401)
T ss_dssp             SEEEEEECTTTCEEEEEEEET-TEEEEEEEEECCSSCCCEEEECTTSSEE
T ss_pred             CeEEEEeecCCCcEEEEecCC-ccceeEEEecCCCCCEEEEEECCCCCEE
Confidence            99998  5 369999999987 444443  66787776666654455443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.5e-31  Score=238.10  Aligned_cols=257  Identities=12%  Similarity=0.186  Sum_probs=197.0

Q ss_pred             cceeeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ...+|.+.|++++|+| ++++||+|+.||.|+||++.++....                ...+.+..+.+|.        
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~----------------~~~~~~~~~~~h~--------  131 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL----------------PLREPVITLEGHT--------  131 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----------------CBCSCSEEEECCS--------
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----------------ccCCceEEecCCC--------
Confidence            3457999999999999 89999999999999999998764210                0112345678888        


Q ss_pred             cccccceeEEEEeecCCC-cEEEEEeCCCeEEEEEcCCCcEEEEe--ccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          109 LEIEEKINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVF--DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                          ..|.+++|+|+  + .+|++++.|+.|++||+.+++....+  ..+        .+.+.       +++|+|++..
T Consensus       132 ----~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~  190 (402)
T 2aq5_A          132 ----KRVGIVAWHPT--AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH--------PDTIY-------SVDWSRDGAL  190 (402)
T ss_dssp             ----SCEEEEEECSS--BTTEEEEEETTSCEEEEETTTTEEEEEECTTTC--------CSCEE-------EEEECTTSSC
T ss_pred             ----CeEEEEEECcC--CCCEEEEEcCCCEEEEEECCCCCccEEEecCCC--------CCceE-------EEEECCCCCE
Confidence                77999999765  5 59999999999999999999887776  333        22344       7899999998


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccc-eEEEEeCCCCCEEEEe----cCCeEEEEe
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH-INSISNNSDGETFISA----DDLRINLWN  260 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~----~d~~i~iwd  260 (408)
                      +            ++++.|+.|++|| +..      ......+...|... +.+++|+|++.+|++|    .|+.|++||
T Consensus       191 l------------~~~~~d~~i~iwd-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd  251 (402)
T 2aq5_A          191 I------------CTSCRDKRVRVIE-PRK------GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD  251 (402)
T ss_dssp             E------------EEEETTSEEEEEE-TTT------TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred             E------------EEEecCCcEEEEe-CCC------CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence            7            9999999999999 533      22233322456554 8899999999999987    699999999


Q ss_pred             CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEE-EEeCCCeEEEEEcCCCceecccccccccccCCCCcccccc
Q 015363          261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE  339 (408)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (408)
                      ++.........      ...|...+.+++|+|++ .+|+ +|+.|+.|++||+.+++...   ..+..+.          
T Consensus       252 ~~~~~~~~~~~------~~~~~~~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~~~~~~~~---~~l~~~~----------  311 (402)
T 2aq5_A          252 TKHLEEPLSLQ------ELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAPFL---HYLSMFS----------  311 (402)
T ss_dssp             TTBCSSCSEEE------ECCCCSSCEEEEEETTT-TEEEEEETTCSCEEEEEECSSTTCE---EEEEEEC----------
T ss_pred             CccccCCceEE------eccCCCceeEEEEcCCC-CEEEEEEcCCCeEEEEEecCCCcce---Eeecccc----------
Confidence            99655534332      12456779999999999 6665 56679999999999876311   3333331          


Q ss_pred             ccceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363          340 IIASISDIKFARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       340 h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~  371 (408)
                      |...|.+++|+|++.+++++ ++.+++|++.+
T Consensus       312 ~~~~v~~~~~sp~~~~~~s~-~~~~~~~~l~~  342 (402)
T 2aq5_A          312 SKESQRGMGYMPKRGLEVNK-CEIARFYKLHE  342 (402)
T ss_dssp             CSSCCSEEEECCGGGSCGGG-TEEEEEEEEET
T ss_pred             cCCcccceEEecccccceec-ceeEEEEEcCC
Confidence            23689999999999988764 45999999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.4e-30  Score=235.59  Aligned_cols=225  Identities=11%  Similarity=0.011  Sum_probs=166.3

Q ss_pred             cceeEEEEeecCCCcEE-EEEeCCCeEEEEEcC--CCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALY-LLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l-~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..|.+++|+|+  +.+| ++++.|+.|++||+.  +++....+..+..      ...+.       +++|+|+++.+   
T Consensus       103 ~~v~~~~~s~d--~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~~~v~-------~~~~sp~~~~l---  164 (450)
T 2vdu_B          103 SYIRNLRLTSD--ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF------SKRPN-------AISIAEDDTTV---  164 (450)
T ss_dssp             CCEEEEEECTT--SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC------SSCEE-------EEEECTTSSEE---
T ss_pred             CceEEEEEcCC--CCEEEEEECCCCeEEEEECcCCCCceeeeeecccC------CCCce-------EEEEcCCCCEE---
Confidence            57999999755  7786 888999999999999  7776666543211      12233       78999999988   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC---CCEEEEe-cCCeEEEEeCCCCC
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                               ++++.++.+++|+ +.......  .+... +.+|...|++++|+|+   +++|+++ .|+.|++||+++..
T Consensus       165 ---------~~~~~~g~v~~~~-~~~~~~~~--~~~~~-~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~  231 (450)
T 2vdu_B          165 ---------IIADKFGDVYSID-INSIPEEK--FTQEP-ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF  231 (450)
T ss_dssp             ---------EEEETTSEEEEEE-TTSCCCSS--CCCCC-SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT
T ss_pred             ---------EEEeCCCcEEEEe-cCCccccc--cccee-eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc
Confidence                     8999999999999 54432211  02223 3678899999999999   8999999 89999999998544


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCc-----------
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR-----------  334 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------  334 (408)
                      .....       +.+|...|++++|+ ++ .+|++++.|+.|++||+++++..    ..+..+......           
T Consensus       232 ~~~~~-------~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  298 (450)
T 2vdu_B          232 IVDKW-------LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNL----STFDYNSLIKPYLNDQHLAPPRF  298 (450)
T ss_dssp             CEEEE-------CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEE----EEEECHHHHGGGCCTTSBC----
T ss_pred             eeeee-------ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEe----eeecchhhhhhhhhhcccccccc
Confidence            33322       46799999999999 88 99999999999999999998654    333221100000           


Q ss_pred             --cccccccceeEEEEEccCCCEEEEeC--CCeEEEEEC--CCCC---Cceeeeeec
Q 015363          335 --SFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDI--NMDS---GPVATFQVH  382 (408)
Q Consensus       335 --~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~--~~~~---~~~~~~~~~  382 (408)
                        .........|.+++|+|++++|++++  ++.|++|++  .. +   ..++.+..|
T Consensus       299 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~  354 (450)
T 2vdu_B          299 QNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ-KGDLALKQIITFP  354 (450)
T ss_dssp             ------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSS-TTCEEEEEEEECS
T ss_pred             cccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC-CCceeeccEeccC
Confidence              00002235789999999999999874  599999999  43 4   566777777

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.98  E-value=1.2e-29  Score=233.90  Aligned_cols=269  Identities=12%  Similarity=0.253  Sum_probs=201.1

Q ss_pred             cceeeccc-eEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQEVDI-ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~-V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ...+|.+. +.++.+  ++++|++|+.||+|++||+.+++                       .+..+.+|.        
T Consensus       116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------  162 (464)
T 3v7d_B          116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD--------  162 (464)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS--------
T ss_pred             EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEeCCC--------
Confidence            34568777 467776  56799999999999999987665                       356788898        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEc--cCCCee
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM--ANGGCG  186 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~l  186 (408)
                          ..|.+++|+|+  + ++++++.||+|++||+.+++....+..+..        .+.       ++.+.  +++..+
T Consensus       163 ----~~V~~l~~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~--------~v~-------~l~~~~~~~~~~l  220 (464)
T 3v7d_B          163 ----GGVWALKYAHG--G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNS--------TVR-------CLDIVEYKNIKYI  220 (464)
T ss_dssp             ----SCEEEEEECST--T-EEEEEETTSCEEEEETTTTEEEEEECCCSS--------CEE-------EEEEEESSSCEEE
T ss_pred             ----cCEEEEEEcCC--C-EEEEEeCCCCEEEEECCCCcEEEEECCCCC--------ccE-------EEEEecCCCCCEE
Confidence                77999999654  5 999999999999999999988877765432        344       56666  566776


Q ss_pred             ecccccccCccccCCCCCceeeeceeeecccccccc-----------------ccceeeccccccceEEEEeCCCCCEEE
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVA-----------------GCRRIYAHAHDYHINSISNNSDGETFI  249 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~v~~i~~~~~~~~l~  249 (408)
                                  ++++.|+.|++|| +.........                 ..... ..+|...+.++  ++++++++
T Consensus       221 ------------~s~s~d~~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~--~~~~~~l~  284 (464)
T 3v7d_B          221 ------------VTGSRDNTLHVWK-LPKESSVPDHGEEHDYPLVFHTPEENPYFVGV-LRGHMASVRTV--SGHGNIVV  284 (464)
T ss_dssp             ------------EEEETTSCEEEEE-CCCCCCC------CCSSEEESCGGGCTTEEEE-ECCCSSCEEEE--EEETTEEE
T ss_pred             ------------EEEcCCCcEEEee-CCCCcccccccccCCcceEeeccCCCeEEEEE-ccCccceEEEE--cCCCCEEE
Confidence                        9999999999999 5543221100                 01222 36788888876  57789999


Q ss_pred             Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc
Q 015363          250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  328 (408)
Q Consensus       250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  328 (408)
                      ++ .|+.|++||+++ ......       +.+|...|.+++|+|++ .+|++|+.|+.|++||+++++.+    ..+.+|
T Consensus       285 ~~~~d~~i~vwd~~~-~~~~~~-------~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~----~~~~~h  351 (464)
T 3v7d_B          285 SGSYDNTLIVWDVAQ-MKCLYI-------LSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELM----YTLQGH  351 (464)
T ss_dssp             EEETTSCEEEEETTT-TEEEEE-------ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEE----EEECCC
T ss_pred             EEeCCCeEEEEECCC-CcEEEE-------ecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEE----EEEeCC
Confidence            99 999999999984 444433       57789999999999999 99999999999999999988654    556555


Q ss_pred             cCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeee
Q 015363          329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM  398 (408)
Q Consensus       329 ~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (408)
                                  ...|.+++|+  +.+|++++ |+.|++||+++ +.....+. |......+....++..+
T Consensus       352 ------------~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l  406 (464)
T 3v7d_B          352 ------------TALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSRKFSYH-HTNLSAITTFYVSDNIL  406 (464)
T ss_dssp             ------------SSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEE-CTTCCCEEEEEECSSEE
T ss_pred             ------------CCcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cceeeeec-CCCCccEEEEEeCCCEE
Confidence                        4789999997  57888875 79999999987 44444432 33334444433444443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.98  E-value=7.5e-30  Score=227.67  Aligned_cols=259  Identities=10%  Similarity=0.129  Sum_probs=197.1

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|.+.|++++|+|++++|++++.||.|++||+.+++.                       +..+. +.          
T Consensus        70 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~~~~-~~----------  115 (369)
T 3zwl_B           70 LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC-----------------------VATWK-SP----------  115 (369)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----------------------EEEEE-CS----------
T ss_pred             hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEee-cC----------
Confidence            346999999999999999999999999999999987653                       23333 44          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCC-----CeEEEEEcCCCcEEEEeccCCC-C--cccCCCC--CeEeecCCceeeEEc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTND-----KTIKLWKVQEKKVKKVFDWNVH-P--EKAAGNG--PIFGSHVSAIPKSYM  180 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~-~--~~~~~~~--~v~~~~~~~~~~~~~  180 (408)
                        ..|.+++|+|+  +.++++++.+     +.|++||+.............. .  ......+  .+.       .++|+
T Consensus       116 --~~v~~~~~~~~--~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  184 (369)
T 3zwl_B          116 --VPVKRVEFSPC--GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT-------VAGWS  184 (369)
T ss_dssp             --SCEEEEEECTT--SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE-------EEEEC
T ss_pred             --CCeEEEEEccC--CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee-------EEEEc
Confidence              67999999754  8899999998     9999999986542211111100 0  0000011  233       78999


Q ss_pred             cCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEE
Q 015363          181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLW  259 (408)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iw  259 (408)
                      |+++.+            ++++.++.|++|| +...     ...... ...|...|.+++|+|++++|+++ .|+.|++|
T Consensus       185 ~~~~~l------------~~~~~dg~i~i~d-~~~~-----~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~  245 (369)
T 3zwl_B          185 TKGKYI------------IAGHKDGKISKYD-VSNN-----YEYVDS-IDLHEKSISDMQFSPDLTYFITSSRDTNSFLV  245 (369)
T ss_dssp             GGGCEE------------EEEETTSEEEEEE-TTTT-----TEEEEE-EECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCCEE------------EEEcCCCEEEEEE-CCCC-----cEeEEE-EecCCCceeEEEECCCCCEEEEecCCceEEEE
Confidence            999987            8999999999999 4321     222333 36788999999999999999999 89999999


Q ss_pred             eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC--------------eEEEEEcCCCceeccccccc
Q 015363          260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--------------SIRLIDMRQSALCDTHSKLF  325 (408)
Q Consensus       260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~  325 (408)
                      |+++.. ....       +. +...+..++|+|++ .++++++.++              .+++||+.+++..    ..+
T Consensus       246 d~~~~~-~~~~-------~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~  311 (369)
T 3zwl_B          246 DVSTLQ-VLKK-------YE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI----GRV  311 (369)
T ss_dssp             ETTTCC-EEEE-------EE-CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCCEE----EEE
T ss_pred             ECCCCc-eeee-------ec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch----hhe
Confidence            999544 4333       22 57789999999999 8999999888              8999999988654    555


Q ss_pred             ccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363          326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                      .+|            ...|.+++|+|++++|++++ |+.|++|+++. +.....+.
T Consensus       312 ~~~------------~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~  354 (369)
T 3zwl_B          312 QGH------------FGPLNTVAISPQGTSYASGGEDGFIRLHHFEK-SYFDFKYD  354 (369)
T ss_dssp             ECC------------SSCEEEEEECTTSSEEEEEETTSEEEEEEECH-HHHTCCCH
T ss_pred             ecc------------cCcEEEEEECCCCCEEEEEcCCCeEEEEECcc-ccchhHHH
Confidence            555            47899999999999999985 79999999986 44444443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=8.9e-30  Score=220.31  Aligned_cols=242  Identities=14%  Similarity=0.166  Sum_probs=171.9

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC--cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccC--CCeeec
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN--GGCGER  188 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~l~~  188 (408)
                      ..|++++|+|  +|++|++|+.|++|++||+...  +....+..|.        +.|.       +++|+++  +..+  
T Consensus        10 ~~V~~~~~s~--~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~--------~~V~-------~v~~s~~~~g~~l--   70 (297)
T 2pm7_B           10 EMIHDAVMDY--YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHE--------GPVW-------RVDWAHPKFGTIL--   70 (297)
T ss_dssp             SCEEEEEECT--TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCS--------SCEE-------EEEECCGGGCSEE--
T ss_pred             CceEEEEECC--CCCEEEEEeCCCEEEEEecCCCCcEEEEEEcccc--------CCeE-------EEEecCCCcCCEE--
Confidence            7799999965  4889999999999999999753  4445554442        3455       6888753  7776  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC--CCEEEEe-cCCeEEEEeCCCCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                ++++.|+.|++|| +.....    ..... ...|...|++++|+|+  +.+|+++ .|+.|++||++...
T Consensus        71 ----------~s~s~D~~v~iWd-~~~~~~----~~~~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~  134 (297)
T 2pm7_B           71 ----------ASCSYDGKVMIWK-EENGRW----SQIAV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG  134 (297)
T ss_dssp             ----------EEEETTTEEEEEE-BSSSCB----CCCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred             ----------EEEcCCCEEEEEE-cCCCce----EEEEE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence                      9999999999999 543211    12222 3678899999999998  8899998 99999999998543


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCC------------CceEEEEeCCCeEEEEEcCCCceecccccccccccCCCC
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTH------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT  333 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  333 (408)
                      .....      .+.+|...|.+++|+|++            .++|++|+.|++|++||++++.........+.+      
T Consensus       135 ~~~~~------~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~------  202 (297)
T 2pm7_B          135 TTSPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG------  202 (297)
T ss_dssp             CBCCE------EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC------
T ss_pred             ceeee------eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC------
Confidence            22111      256789999999999973            168999999999999999876421111234444      


Q ss_pred             ccccccccceeEEEEEccCC---CEEEEeC-CCeEEEEECCCCCCc--eeee--eecccccceEEecCCCeeee---eec
Q 015363          334 RSFFTEIIASISDIKFARNG---RHILSRD-YMTLKLWDINMDSGP--VATF--QVHEHLRPKVMHSSKNYFMG---LDN  402 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg---~~l~s~~-d~~v~~wd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~---~d~  402 (408)
                            |...|.+++|+|++   .+|++++ |++|++||++.....  ...+  ..|......+....++..++   .|.
T Consensus       203 ------H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~  276 (297)
T 2pm7_B          203 ------HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  276 (297)
T ss_dssp             ------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS
T ss_pred             ------CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC
Confidence                  46889999999985   8899985 799999999863211  1222  34555444444333444443   255


Q ss_pred             eeeec
Q 015363          403 IHTLY  407 (408)
Q Consensus       403 ~~~~~  407 (408)
                      ..+||
T Consensus       277 ~v~lw  281 (297)
T 2pm7_B          277 KVTLW  281 (297)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            55555

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=1.5e-29  Score=260.17  Aligned_cols=295  Identities=15%  Similarity=0.207  Sum_probs=221.2

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|.+.|++++|+|++++||+|+.||.|+|||+.+++                       .+..+.+|.          
T Consensus       653 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----------------------~~~~~~~~~----------  699 (1249)
T 3sfz_A          653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-----------------------LVHTYDEHS----------  699 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------EEEEEECCS----------
T ss_pred             eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-----------------------eEEEEcCCC----------
Confidence            34699999999999999999999999999999998765                       356778888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        ..|.+++|+|+.++.++++++.|+.|++||+.+++....+..+..        .+.       +++|+|+++.+    
T Consensus       700 --~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~--------~v~-------~~~~sp~~~~l----  758 (1249)
T 3sfz_A          700 --EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN--------SVN-------HCRFSPDDELL----  758 (1249)
T ss_dssp             --SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS--------CEE-------EEEECSSTTEE----
T ss_pred             --CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC--------CEE-------EEEEecCCCEE----
Confidence              779999998876677999999999999999999988877765532        344       68899999887    


Q ss_pred             ccccCccccCCCCCceeeeceeeecccccc------------------------------------------------cc
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNL------------------------------------------------VA  222 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------------------------------------~~  222 (408)
                              ++++.|+.|++|| +.......                                                ..
T Consensus       759 --------~s~s~dg~v~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~  829 (1249)
T 3sfz_A          759 --------ASCSADGTLRLWD-VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS  829 (1249)
T ss_dssp             --------EEEESSSEEEEEE-GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred             --------EEEECCCeEEEEe-CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence                    8888899999998 43321100                                                01


Q ss_pred             ccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEE
Q 015363          223 GCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS  301 (408)
Q Consensus       223 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  301 (408)
                      .....+..+|...+.+++|+|++++++++ .|+.|++||+.+. .....       +.+|...|++++|+|++ .+|+++
T Consensus       830 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~-------~~~h~~~v~~v~~spdg-~~l~s~  900 (1249)
T 3sfz_A          830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVAD-------CRGHLSWVHGVMFSPDG-SSFLTA  900 (1249)
T ss_dssp             CEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEE-------ECCCSSCEEEEEECTTS-SEEEEE
T ss_pred             CceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeee-------cCCCccceEEEEECCCC-CEEEEE
Confidence            11122224788899999999999999999 9999999999944 33332       57899999999999999 999999


Q ss_pred             eCCCeEEEEEcCCCceec--------------------------------------------------------------
Q 015363          302 SSKGSIRLIDMRQSALCD--------------------------------------------------------------  319 (408)
Q Consensus       302 ~~dg~i~iwd~~~~~~~~--------------------------------------------------------------  319 (408)
                      +.|+.|++||+.+.....                                                              
T Consensus       901 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~  980 (1249)
T 3sfz_A          901 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD  980 (1249)
T ss_dssp             ETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEE
T ss_pred             eCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEc
Confidence            999999999975321000                                                              


Q ss_pred             --ccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCe
Q 015363          320 --THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNY  396 (408)
Q Consensus       320 --~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (408)
                        ..+..+.. ........+.+|...|.+++|+|+|++|++++ |+.|++||+.+ ++.+ .+..|......+....++.
T Consensus       981 ~~g~i~i~d~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~-~~~~~~~~v~~~~~~~~~~ 1057 (1249)
T 3sfz_A          981 EDGAIKIIEL-PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT-GDYV-FLQAHQETVKDFRLLQDSR 1057 (1249)
T ss_dssp             TTSCCEEEET-TTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT-TEEE-CCBCCSSCEEEEEECSSSE
T ss_pred             CCCCEEEEEc-CCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CceE-EEecCCCcEEEEEEcCCCc
Confidence              00000000 01112233567889999999999999999986 79999999987 4544 4556766665555444555


Q ss_pred             eeee
Q 015363          397 FMGL  400 (408)
Q Consensus       397 ~~~~  400 (408)
                      ++..
T Consensus      1058 l~~~ 1061 (1249)
T 3sfz_A         1058 LLSW 1061 (1249)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5444

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=3e-29  Score=229.10  Aligned_cols=252  Identities=16%  Similarity=0.299  Sum_probs=200.0

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .|...|+|+++  ++++|++|+.||.|++||+.+++                       ....+.+|.            
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------  173 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----------------------CKRILTGHT------------  173 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----------------------EEEEECCCS------------
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-----------------------EEEEEcCCC------------
Confidence            46778999987  78999999999999999987665                       346678888            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..|.+++|  +  +.++++|+.||+|++||+.+++....+..+..        .+.       ++.++  +..+      
T Consensus       174 ~~v~~l~~--~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--------~v~-------~l~~~--~~~l------  226 (435)
T 1p22_A          174 GSVLCLQY--D--ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE--------AVL-------HLRFN--NGMM------  226 (435)
T ss_dssp             SCEEEEEC--C--SSEEEEEETTSCEEEEESSSCCEEEEECCCCS--------CEE-------EEECC--TTEE------
T ss_pred             CcEEEEEE--C--CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC--------cEE-------EEEEc--CCEE------
Confidence            77999998  3  66999999999999999999988777765432        233       45554  3455      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                            ++++.|+.|++|| +......   ..... ..+|...|.+++|  +++++++| .|+.|++||+++. ..... 
T Consensus       227 ------~s~s~dg~i~vwd-~~~~~~~---~~~~~-~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~~~~~-  291 (435)
T 1p22_A          227 ------VTCSKDRSIAVWD-MASPTDI---TLRRV-LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRT-  291 (435)
T ss_dssp             ------EEEETTSCEEEEE-CSSSSCC---EEEEE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEE-
T ss_pred             ------EEeeCCCcEEEEe-CCCCCCc---eeeeE-ecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-cEEEE-
Confidence                  9999999999999 5432211   11122 3788899999999  78899998 9999999999954 34333 


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                            +.+|...|.+++|+  + .++++|+.|+.|++||+++++.+    ..+.+|            ...|.+++|  
T Consensus       292 ------~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~~----~~~~~h------------~~~v~~~~~--  344 (435)
T 1p22_A          292 ------LNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACL----RVLEGH------------EELVRCIRF--  344 (435)
T ss_dssp             ------EECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEE----EEECCC------------SSCEEEEEC--
T ss_pred             ------EcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCEE----EEEeCC------------cCcEEEEEe--
Confidence                  56788999999994  5 78999999999999999988654    555555            478999999  


Q ss_pred             CCCEEEEeC-CCeEEEEECCCCCC---------ceeeeeecccccceEEe
Q 015363          352 NGRHILSRD-YMTLKLWDINMDSG---------PVATFQVHEHLRPKVMH  391 (408)
Q Consensus       352 dg~~l~s~~-d~~v~~wd~~~~~~---------~~~~~~~~~~~~~~~~~  391 (408)
                      ++.+|++|+ ||.|++||+.+ +.         ++..+.+|......+..
T Consensus       345 ~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~  393 (435)
T 1p22_A          345 DNKRIVSGAYDGKIKVWDLVA-ALDPRAPAGTLCLRTLVEHSGRVFRLQF  393 (435)
T ss_dssp             CSSEEEEEETTSCEEEEEHHH-HTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred             cCCEEEEEeCCCcEEEEECCC-CCCccccccchheeeccCCCCCeEEEEe
Confidence            788999985 79999999976 34         78889999888777654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6e-30  Score=233.98  Aligned_cols=273  Identities=8%  Similarity=0.085  Sum_probs=194.2

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc--
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL--  109 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~--  109 (408)
                      ..|.+.|++++|+|++++|++|+.||.|++||+..... +.                   ....+.+|.     +..+  
T Consensus       108 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~-------------------~~~~~~~~~-----i~~~~~  162 (437)
T 3gre_A          108 YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQ-ES-------------------EVKFLNCEC-----IRKINL  162 (437)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEE-TT-------------------EEEEEEEEE-----EEEEEG
T ss_pred             ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccC-Cc-------------------eeeccccce-----eEEEEc
Confidence            46899999999999999999999999999999852210 00                   111111111     0000  


Q ss_pred             -c--cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          110 -E--IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       110 -~--~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                       .  ....+.++.+...+++.+|++++.|+.|++||+++++....+....+      .+.+.       +++|+|++..+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h------~~~v~-------~~~~s~~~~~l  229 (437)
T 3gre_A          163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR------HGAVS-------SICIDEECCVL  229 (437)
T ss_dssp             GGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG------GCCEE-------EEEECTTSCEE
T ss_pred             cCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC------CCceE-------EEEECCCCCEE
Confidence             0  22668888877677789999999999999999999988877765311      22344       78999999988


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeC----CCCCEEEEe-cCCeEEEEeC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN----SDGETFISA-DDLRINLWNL  261 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~l~~~-~d~~i~iwd~  261 (408)
                                  ++++.|+.|++|| +..      ..+...+...|...|++++|+    |++.+|+++ .|+.|++||+
T Consensus       230 ------------~s~~~dg~i~iwd-~~~------~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~  290 (437)
T 3gre_A          230 ------------ILGTTRGIIDIWD-IRF------NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF  290 (437)
T ss_dssp             ------------EEEETTSCEEEEE-TTT------TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred             ------------EEEcCCCeEEEEE-cCC------ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence                        9999999999999 433      334444323677889999555    567799999 8999999999


Q ss_pred             CCCCceeeEeecC----------C-------CcccC--CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccc
Q 015363          262 EISNQSFNIVDVK----------P-------ANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS  322 (408)
Q Consensus       262 ~~~~~~~~~~~~~----------~-------~~~~~--~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  322 (408)
                      ++. .....+...          +       ..+.+  |...|++++|+ ++ .+|++|+.|+.|++||+++++..    
T Consensus       291 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~~~~~----  363 (437)
T 3gre_A          291 VKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLNELSSS----  363 (437)
T ss_dssp             TTT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETTCGGGC----
T ss_pred             CCC-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECCCcccc----
Confidence            844 433333211          0       01223  77889999999 77 89999999999999999988644    


Q ss_pred             cccccccCC-------------------------CCccccccccceeEEEEEccC--CCEEEEeC-CCeEEEEE
Q 015363          323 KLFEEQEAP-------------------------GTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWD  368 (408)
Q Consensus       323 ~~~~~~~~~-------------------------~~~~~~~~h~~~i~~~~~spd--g~~l~s~~-d~~v~~wd  368 (408)
                      ..+.+|...                         .....+..|...|.+++|+++  +.+|++|+ ||.|++|+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          364 KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             eEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            444443110                         011223348899999999998  77999985 69999995

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=4.9e-29  Score=217.87  Aligned_cols=244  Identities=14%  Similarity=0.194  Sum_probs=186.9

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|...|++++|+|++++||+|+.||+|+||++.+++                       .+..+.+|.           
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-----------------------~~~~~~~h~-----------  109 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----------------------RLRNMTSHS-----------  109 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS-----------
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----------------------eEEEecCcc-----------
Confidence            3688899999999999999999999999999998765                       356778888           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE-EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                       ..+.++.+  .  +..+++++.++.+++|+...... ......+..        .+.       .+.+.++++.+    
T Consensus       110 -~~~~~~~~--~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-------~~~~~~~~~~l----  165 (318)
T 4ggc_A          110 -ARVGSLSW--N--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--------EVC-------GLRWAPDGRHL----  165 (318)
T ss_dssp             -SCEEEEEE--E--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--------CEE-------EEEECTTSSEE----
T ss_pred             -ceEEEeec--C--CCEEEEEecCCceEeeecCCCceeEEEEcCccC--------ceE-------EEEEcCCCCEE----
Confidence             55666655  4  45999999999999999987643 333333322        233       57889999987    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE---Ee-cCCeEEEEeCCCCCc
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI---SA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~---~~-~d~~i~iwd~~~~~~  266 (408)
                              ++++.|+.|++|| +...+...  ..... ...+...|.+++++|++..++   ++ .++.|++||.+....
T Consensus       166 --------~s~~~d~~i~iwd-~~~~~~~~--~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~  233 (318)
T 4ggc_A          166 --------ASGGNDNLVNVWP-SAPGEGGW--VPLQT-FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC  233 (318)
T ss_dssp             --------EEEETTSCEEEEE-SSCBTTBS--CCSEE-ECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE
T ss_pred             --------EEEecCcceeEEE-CCCCcccc--cceee-ecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc
Confidence                    9999999999999 54322211  11122 256778899999999875433   45 789999999985443


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe--CCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      ...         ..+...+..+.|+|++ ..+++++  .|+.|++||+++++.+    ..+.+|            .+.|
T Consensus       234 ~~~---------~~~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~~~~~----~~l~gH------------~~~V  287 (318)
T 4ggc_A          234 LSA---------VDAHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAKV----AELKGH------------TSRV  287 (318)
T ss_dssp             EEE---------EECSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCEE----EEECCC------------SSCE
T ss_pred             ccc---------ccceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCCCcEE----EEEcCC------------CCCE
Confidence            322         3356778999999999 6665544  7999999999998665    666666            5789


Q ss_pred             EEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          345 SDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       345 ~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      ++++|+|||++|++|+ |++|+|||+..
T Consensus       288 ~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          288 LSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            9999999999999985 79999999975

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.2e-30  Score=234.87  Aligned_cols=258  Identities=14%  Similarity=0.067  Sum_probs=169.0

Q ss_pred             eEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeE
Q 015363           38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK  117 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  117 (408)
                      +....+++++.+||+|+.|++|+|||..++...                  ....+..+.+|.            +.|++
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~------------------~~~~~~~~~gH~------------~~v~~  141 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETII------------------TQHVLGGKSGHH------------NFVND  141 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEEE------------------EEEEECTTTSCS------------SCEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCccc------------------eeeeecccCCCC------------CceEE
Confidence            333444456678999999999999999877531                  122345678898            77999


Q ss_pred             EEEeec------CCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC-eeeccc
Q 015363          118 IRWCQS------ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG-CGERNF  190 (408)
Q Consensus       118 v~~~p~------~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~~  190 (408)
                      ++|+|.      .++++||+++.|++|+|||+.++........+.        ..+.       +++|+|++. .+    
T Consensus       142 v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~--------~~v~-------~v~~~p~~~~~l----  202 (393)
T 4gq1_A          142 IDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLS--------SPGI-------SVQFRPSNPNQL----  202 (393)
T ss_dssp             EEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECS--------SCEE-------EEEEETTEEEEE----
T ss_pred             EEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCC--------CCcE-------EEEECCCCCceE----
Confidence            999972      257899999999999999998776555443332        2344       789999886 45    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccc------------------cceeeccccccceEEEEeC-CCCCEEEEe
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG------------------CRRIYAHAHDYHINSISNN-SDGETFISA  251 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~v~~i~~~-~~~~~l~~~  251 (408)
                              ++++.|+.|++|| +..........                  .......+|...+.++.|+ |+++.++++
T Consensus       203 --------~~~~~d~~v~~wd-~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~  273 (393)
T 4gq1_A          203 --------IVGERNGNIRIFD-WTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM  273 (393)
T ss_dssp             --------EEEETTSEEEEEE-TTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE
T ss_pred             --------EecCCCCEEEEEE-CCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE
Confidence                    8999999999999 54322110000                  0001124677888899986 899999999


Q ss_pred             -cCCeEEEEeCCCCCceeeEee---------cCC--CcccCCcCCeEEEEEcC-CCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          252 -DDLRINLWNLEISNQSFNIVD---------VKP--ANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~---------~~~--~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                       .|+++++||+........+..         ..+  .....+...+ ...|+| .+..++++|+.||.|++||+.++...
T Consensus       274 s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~  352 (393)
T 4gq1_A          274 CKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYEKDSN  352 (393)
T ss_dssp             CTTSEEEEEEC-------------------CCSCSEEEECSSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred             eCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence             999999999985432221100         000  0001111112 223333 33256778888999999999988543


Q ss_pred             cccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECC
Q 015363          319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN  370 (408)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~  370 (408)
                          ..+..|            ...|.+++|+|||++||+++++.+.+|.+.
T Consensus       353 ----~~~~~~------------~~~V~svafspdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          353 ----SIPIQL------------GMPIVDFCWHQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             ----EEEEEC------------SSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred             ----EEecCC------------CCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence                333444            468999999999999999988788888875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.2e-29  Score=229.26  Aligned_cols=265  Identities=11%  Similarity=0.118  Sum_probs=193.8

Q ss_pred             eEEEEECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccccee
Q 015363           38 ISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (408)
Q Consensus        38 V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  116 (408)
                      ...++++|+.. ++++|+.||.|+||++......                   ......+.+|.            ..|+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------------------~~~~~~~~~h~------------~~V~   85 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------------------DKNVPLVCGHT------------APVL   85 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-------------------CTTCCCBCCCS------------SCEE
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-------------------CCCCceEecCC------------CCEE
Confidence            44688888865 4456889999999998654210                   01234567888            7799


Q ss_pred             EEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-------EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC-Ceeec
Q 015363          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKK-------VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG-GCGER  188 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~l~~  188 (408)
                      +++|+|. ++.+|++++.||+|++||+.++.       ....+..+        .+.+.       .++|+|++ ..+  
T Consensus        86 ~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h--------~~~v~-------~~~~~p~~~~~l--  147 (402)
T 2aq5_A           86 DIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH--------TKRVG-------IVAWHPTAQNVL--  147 (402)
T ss_dssp             EEEECTT-CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC--------SSCEE-------EEEECSSBTTEE--
T ss_pred             EEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC--------CCeEE-------EEEECcCCCCEE--
Confidence            9999761 47799999999999999999873       33333333        22344       78999998 465  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeec-cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                                ++++.|+.|++|| +..      ..+...+. ..|...|.+++|+|++++|+++ .|+.|++||+++. .
T Consensus       148 ----------~s~~~dg~i~iwd-~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~  209 (402)
T 2aq5_A          148 ----------LSAGCDNVILVWD-VGT------GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-T  209 (402)
T ss_dssp             ----------EEEETTSCEEEEE-TTT------TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-E
T ss_pred             ----------EEEcCCCEEEEEE-CCC------CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC-c
Confidence                      8999999999999 543      22333322 5788999999999999999999 8999999999954 3


Q ss_pred             eeeEeecCCCcc-cCCcCC-eEEEEEcCCCCceEEEE---eCCCeEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363          267 SFNIVDVKPANM-EDLTEV-ITSAEFHPTHCNMLAYS---SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       267 ~~~~~~~~~~~~-~~~~~~-v~~~~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                      ....       + ..|... +.++.|+|++ .+|++|   +.|+.|++||++++...   +.....           .|.
T Consensus       210 ~~~~-------~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~---~~~~~~-----------~~~  267 (402)
T 2aq5_A          210 VVAE-------KDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEP---LSLQEL-----------DTS  267 (402)
T ss_dssp             EEEE-------EECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSC---SEEEEC-----------CCC
T ss_pred             eeee-------eccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCC---ceEEec-----------cCC
Confidence            3332       3 456655 8899999999 899998   78999999999987531   112111           123


Q ss_pred             ceeEEEEEccCCCEEE-EeC-CCeEEEEECCCCCCceeeeeecc--cccceEEe
Q 015363          342 ASISDIKFARNGRHIL-SRD-YMTLKLWDINMDSGPVATFQVHE--HLRPKVMH  391 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~-s~~-d~~v~~wd~~~~~~~~~~~~~~~--~~~~~~~~  391 (408)
                      ..|.+++|+|++++|+ +|+ |+.|++||+.+....+..+..|.  .....+..
T Consensus       268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~  321 (402)
T 2aq5_A          268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGY  321 (402)
T ss_dssp             SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEE
T ss_pred             CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEE
Confidence            6799999999999986 564 79999999997433366776664  44455543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-29  Score=249.29  Aligned_cols=167  Identities=12%  Similarity=0.111  Sum_probs=124.7

Q ss_pred             cccCCCCCceeeeceeeeccccccccccceeec-----cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce---
Q 015363          197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-----HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS---  267 (408)
Q Consensus       197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~---  267 (408)
                      ++++++.|++|++|| +....... .......+     .+|...|++++|+|++++||+| .|++|++||+.+....   
T Consensus       449 ~laSgs~DgtVrlWd-~~~g~~~~-~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~  526 (902)
T 2oaj_A          449 AFITGHSNGSVRIYD-ASHGDIQD-NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVE  526 (902)
T ss_dssp             EEEEEETTSEEEEEE-SSCCTTTT-TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----
T ss_pred             EEEEecCCCcEEEEE-CCCccccC-CceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcc
Confidence            459999999999999 55432110 00000001     2788899999999999999999 9999999999854210   


Q ss_pred             --------------------------------------eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEE
Q 015363          268 --------------------------------------FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL  309 (408)
Q Consensus       268 --------------------------------------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  309 (408)
                                                            ++.+    ..+.+|...|++++|+|+|  +||+|+.|++|+|
T Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~l  600 (902)
T 2oaj_A          527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS----TAVHANKGKTSAINNSNIG--FVGIAYAAGSLML  600 (902)
T ss_dssp             -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE----EEECCCSCSEEEEEECBTS--EEEEEETTSEEEE
T ss_pred             ccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee----EEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEE
Confidence                                                  0000    1257799999999999999  8999999999999


Q ss_pred             EEcCCCceecc-cccccccccCCCCccccccccceeEEEEEc-----cCC---CEEEEeC-CCeEEEEEC---CCCCCce
Q 015363          310 IDMRQSALCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFA-----RNG---RHILSRD-YMTLKLWDI---NMDSGPV  376 (408)
Q Consensus       310 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-----pdg---~~l~s~~-d~~v~~wd~---~~~~~~~  376 (408)
                      ||+++...+.+ .+..+.           .+|...|++++|+     |||   ++|++|+ |++|++||+   .+ |+.+
T Consensus       601 wd~~~~~~~~~~~~~~~~-----------~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~-g~~~  668 (902)
T 2oaj_A          601 IDRRGPAIIYMENIREIS-----------GAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASG-GKFD  668 (902)
T ss_dssp             EETTTTEEEEEEEGGGTC-----------SSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGG-GCEE
T ss_pred             EECCCCeEEEEeehhHhc-----------cccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCC-CcEE
Confidence            99987754311 011221           2567899999999     885   8999985 799999999   65 7888


Q ss_pred             eeeeecc
Q 015363          377 ATFQVHE  383 (408)
Q Consensus       377 ~~~~~~~  383 (408)
                      ..+.+|.
T Consensus       669 ~~~~~~~  675 (902)
T 2oaj_A          669 VQLMDIT  675 (902)
T ss_dssp             EEEEEEE
T ss_pred             EEecCce
Confidence            9998886

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-29  Score=229.39  Aligned_cols=268  Identities=9%  Similarity=0.039  Sum_probs=184.9

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccc---cccCCCccceeeeeccCCcccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDY---SMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      -..+|.+++|+|||+++||++.|++|+  |......       ++....   .++++|+... ..+.--..+-..+.++.
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~-------l~gh~~~v~~V~FsPdg~~-~~~~~~~~~~~~~~~~~   83 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD-------INCNSKNLFHVKEFPLEFE-NKLDFELAQQNGLLNSQ   83 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC-------CSSBGGGTEEEEEECCCCC-CTTTTSCCCSSCSSTTS
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccce-------ecCCCccEEEEEECCCCCc-ceEEEEeCCCceEeecC
Confidence            357899999999999999999999999  6544432       211111   4555665521 11111101101112223


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      ++..|.+++|+|+  |.+||+++.||+|++||.++  +...+. +..   ..+...+.       +++|+|+|+.+    
T Consensus        84 ~~~~V~~vawSPd--G~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~---~~~~~sv~-------svafSPDG~~L----  144 (588)
T 2j04_A           84 PVCYPRVCKPSPI--DDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG---NLSSRTYH-------CFEWNPIESSI----  144 (588)
T ss_dssp             CSCCEEEEEECSS--SSCEEEEETTSCEEEEETTE--EEEECC-CSS---CSTTTCEE-------EEEECSSSSCE----
T ss_pred             CCCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCc--eeeecc-CCC---ccccccEE-------EEEEcCCCCEE----
Confidence            3588999999765  88999999999999999654  333333 221   11122344       79999999998    


Q ss_pred             ccccCccccCCCCCceeeeceeeecccccccc-ccceee---ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVA-GCRRIY---AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                              ++++.||.|++|+ +......... -....+   ..+|...|.+++|+|+|  ++++ .|++|++||+....
T Consensus       145 --------Asgs~DGtVkIWd-~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          145 --------VVGNEDGELQFFS-IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             --------EEEETTSEEEEEE-CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred             --------EEEcCCCEEEEEE-CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence                    9999999999999 5542210000 011222   26688899999999999  5555 99999999998544


Q ss_pred             ce--eeEeecCCCcc-cCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccc-cccCCCCcccccccc
Q 015363          266 QS--FNIVDVKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE-EQEAPGTRSFFTEII  341 (408)
Q Consensus       266 ~~--~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~  341 (408)
                      ..  ...       + .+|...|.+++|+  + +.||+++ +++|++||+.++...     .+. +|            .
T Consensus       214 ~~~~~~t-------L~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~-----~~~~gh------------~  265 (588)
T 2j04_A          214 HQPVSRM-------IQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSIS-----SLKTGS------------L  265 (588)
T ss_dssp             SCCCEEE-------EECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEE-----EEECSC------------C
T ss_pred             cccceee-------ecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEE-----EEEcCC------------C
Confidence            21  111       3 4678899999999  6 7888887 699999999987542     221 34            5


Q ss_pred             ceeEEEEE--ccCCCEEEEeC-CCeEEEEECC
Q 015363          342 ASISDIKF--ARNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       342 ~~i~~~~~--spdg~~l~s~~-d~~v~~wd~~  370 (408)
                      +.|.+++|  +||+..|++++ +|+ ++|..+
T Consensus       266 ~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          266 ENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             SCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             ceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            78999999  99999999996 688 999874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=1.1e-28  Score=235.31  Aligned_cols=272  Identities=14%  Similarity=0.182  Sum_probs=209.3

Q ss_pred             cceeeccc-eEEEEECC--CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccc
Q 015363           30 EEVQEVDI-ISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (408)
Q Consensus        30 ~~~~h~~~-V~~~~~s~--~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  106 (408)
                      ...+|.+. |++++|+|  ++++||+|+.||.|+||++.++...               ..+..+....+..|.      
T Consensus        58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~---------------~~~~~~~~~~~~~~~------  116 (615)
T 1pgu_A           58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES---------------NSVEVNVKSEFQVLA------  116 (615)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG---------------TEEEEEEEEEEECCS------
T ss_pred             EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccc---------------ccccccccchhhccc------
Confidence            34569999 99999999  9999999999999999998644100               000122455677777      


Q ss_pred             cccccccceeEEEEeecCCCcEEEEEeCC----CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccC
Q 015363          107 KSLEIEEKINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN  182 (408)
Q Consensus       107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  182 (408)
                            ..|.+++|+|+  +.+|++++.+    +.|++||  .++....+..+        .+.+.       ++.|+|+
T Consensus       117 ------~~v~~~~~s~~--~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~--------~~~v~-------~~~~~~~  171 (615)
T 1pgu_A          117 ------GPISDISWDFE--GRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGH--------SQRIN-------ACHLKQS  171 (615)
T ss_dssp             ------SCEEEEEECTT--SSEEEEEECCSSCSEEEEETT--TCCEEEECCSC--------SSCEE-------EEEECSS
T ss_pred             ------ccEEEEEEeCC--CCEEEEeccCCCCccEEEEEE--CCCcceeeecC--------CccEE-------EEEECCC
Confidence                  77999999754  8899999987    6888888  44445544443        22344       7899999


Q ss_pred             CC-eeecccccccCccccCCCCCceeeeceeeeccccccccccceeecccccc---ceEEEEeCCC-CCEEEEe-cCCeE
Q 015363          183 GG-CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY---HINSISNNSD-GETFISA-DDLRI  256 (408)
Q Consensus       183 ~~-~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~-~~~l~~~-~d~~i  256 (408)
                      +. .+            ++++.++.|++|| +..      .++...+ ..|..   .|++++|+|+ +++|+++ .|+.|
T Consensus       172 ~~~~l------------~~~~~d~~v~vwd-~~~------~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  231 (615)
T 1pgu_A          172 RPMRS------------MTVGDDGSVVFYQ-GPP------FKFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI  231 (615)
T ss_dssp             SSCEE------------EEEETTTEEEEEE-TTT------BEEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTCCE
T ss_pred             CCcEE------------EEEeCCCcEEEEe-CCC------cceeeee-cccCCCCceEEEEEECCCCCCEEEEEeCCCeE
Confidence            98 45            8999999999999 432      2333443 67888   8999999999 9999998 89999


Q ss_pred             EEEeCCCCCceeeEeecCCCcc-c---CCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363          257 NLWNLEISNQSFNIVDVKPANM-E---DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  332 (408)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  332 (408)
                      ++||+++.. ....       + .   .|...|.+++|+ ++ .+|++++.|+.|++||+++++..    ..+..+.   
T Consensus       232 ~vwd~~~~~-~~~~-------~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~----~~~~~~~---  294 (615)
T 1pgu_A          232 SCFDGKSGE-FLKY-------IEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCV----QKWTLDK---  294 (615)
T ss_dssp             EEEETTTCC-EEEE-------CCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEE----EEEECCT---
T ss_pred             EEEECCCCC-EeEE-------ecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEE----EEEcCCC---
Confidence            999998544 3332       3 4   789999999999 88 99999999999999999988654    4444431   


Q ss_pred             CccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEe
Q 015363          333 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMH  391 (408)
Q Consensus       333 ~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~  391 (408)
                           ..+...+.++.|+ ++.+|++++ |+.|++||+.+ ++++..+.+|......+..
T Consensus       295 -----~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~v~~~~~  347 (615)
T 1pgu_A          295 -----QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH-DEVLKTISGHNKGITALTV  347 (615)
T ss_dssp             -----TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE-EEEEEEECCCSSCEEEEET
T ss_pred             -----CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC-CcEEEEEeCCCCCEEEEEe
Confidence                 1123568888886 888888885 79999999997 7889999998887666654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=8.4e-30  Score=232.62  Aligned_cols=214  Identities=14%  Similarity=0.199  Sum_probs=165.1

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc-CCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~~~~  191 (408)
                      ..|++|+|+|. ++.+||+|+.||+|+|||+.+++.........+      .+.|.       +++|+| ++..+     
T Consensus       120 ~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH------~~~V~-------~l~f~p~~~~~l-----  180 (435)
T 4e54_B          120 RRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA------GGSIT-------GLKFNPLNTNQF-----  180 (435)
T ss_dssp             SCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCSCCEEECCCSS------SCCCC-------EEEECSSCTTEE-----
T ss_pred             CCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCCceeEEEccCC------CCCEE-------EEEEeCCCCCEE-----
Confidence            77999999875 345899999999999999988766555544332      23344       789998 57776     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeec--cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA--HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                             ++++.|+.|++|| +...       ....+.  ..+...+.+++|+|++.+|++| .|+.|++||++ .+...
T Consensus       181 -------~s~s~D~~v~iwd-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~  244 (435)
T 4e54_B          181 -------YASSMEGTTRLQD-FKGN-------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELW  244 (435)
T ss_dssp             -------EEECSSSCEEEEE-TTSC-------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCC
T ss_pred             -------EEEeCCCEEEEee-ccCC-------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeE
Confidence                   9999999999999 5321       111111  2334567899999999999999 99999999997 33322


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                              .+.+|...|++++|+|++..+|++|+.|+.|++||+++.+.. ..+..            ..+|...|.+++
T Consensus       245 --------~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~-~~~~~------------~~~h~~~v~~~~  303 (435)
T 4e54_B          245 --------NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK-ASFLY------------SLPHRHPVNAAC  303 (435)
T ss_dssp             --------CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS-SCCSB------------CCBCSSCEEECC
T ss_pred             --------EEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc-ceEEE------------eeecccccccee
Confidence                    367899999999999998668999999999999999887532 11111            234568899999


Q ss_pred             EccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecc
Q 015363          349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       349 ~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                      |+|+|++|++++ |+.|++||+.+ +.....+..|.
T Consensus       304 ~spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~  338 (435)
T 4e54_B          304 FSPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHP  338 (435)
T ss_dssp             BCTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCC
T ss_pred             ECCCCCeeEEEcCCCEEEEEECCC-CccceEEeccc
Confidence            999999999985 79999999997 67776666654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.3e-29  Score=219.61  Aligned_cols=235  Identities=9%  Similarity=0.029  Sum_probs=170.2

Q ss_pred             EECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEe
Q 015363           42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC  121 (408)
Q Consensus        42 ~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~  121 (408)
                      .+.+++.+|++|+.||+|++||+.+++.                       +..+.  .            ..|.++.|+
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~-----------------------~~~~~--~------------~~v~~~~~~   85 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKT-----------------------ITTIT--T------------PNPRTGGEH   85 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSC-----------------------EEEEE--E------------ECCCTTCCC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcE-----------------------EEEEe--c------------CCceeeeeC
Confidence            4456788999999999999999987753                       12222  1            558888886


Q ss_pred             ecCCCcEEEEEeCCCeEEEEEcCC---------CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc--CCCeeeccc
Q 015363          122 QSANSALYLLSTNDKTIKLWKVQE---------KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA--NGGCGERNF  190 (408)
Q Consensus       122 p~~~~~~l~~~~~d~~i~vwd~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~l~~~~  190 (408)
                      |.     +++++.|++|++|+...         ++.........       .+.+.       .+.++|  +++.+    
T Consensus        86 ~~-----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~-------~~~~~~~~~~~~l----  142 (343)
T 3lrv_A           86 PA-----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS-------ANEII-------YMYGHNEVNTEYF----  142 (343)
T ss_dssp             CS-----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC-------SSCEE-------EEECCC---CCEE----
T ss_pred             Cc-----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC-------CCCEE-------EEEcCCCCCCCEE----
Confidence            54     99999999999998764         22222222110       22344       789999  89887    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              ++++.|+.|++|| +...      .+.......+...+++++|+|++.+|++| .|+.|++||+++......
T Consensus       143 --------~s~s~dg~i~~wd-~~~~------~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~  207 (343)
T 3lrv_A          143 --------IWADNRGTIGFQS-YEDD------SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS  207 (343)
T ss_dssp             --------EEEETTCCEEEEE-SSSS------CEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE
T ss_pred             --------EEEeCCCcEEEEE-CCCC------cEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc
Confidence                    9999999999999 5432      22222223455679999999999999998 999999999996554423


Q ss_pred             EeecCCCcccC-CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee--EE
Q 015363          270 IVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI--SD  346 (408)
Q Consensus       270 ~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i--~~  346 (408)
                      .       +.. |...|++++|+|++ .+|++++ |+.|++||+++++..    ..+..+.         .|...+  .+
T Consensus       208 ~-------~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~----~~~~~~~---------~~~~~~~~~~  265 (343)
T 3lrv_A          208 R-------FPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGT----LAYPTYT---------IPEFKTGTVT  265 (343)
T ss_dssp             E-------CCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTC----BSSCCCB---------C-----CCEE
T ss_pred             E-------EeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcc----eeecccc---------cccccccceE
Confidence            2       455 89999999999999 9999999 559999999987543    2222210         111223  46


Q ss_pred             EEEccCCCEEEEe-C-CCeEEEEECCCCC
Q 015363          347 IKFARNGRHILSR-D-YMTLKLWDINMDS  373 (408)
Q Consensus       347 ~~~spdg~~l~s~-~-d~~v~~wd~~~~~  373 (408)
                      ++|+|+|++|+++ . |+.|++|++....
T Consensus       266 ~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          266 YDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence            9999999999996 4 7999999997643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=1.5e-28  Score=242.08  Aligned_cols=245  Identities=16%  Similarity=0.216  Sum_probs=199.2

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|.++|++++|+|++++||+|+.||.|+||++.+++                       ....+.+|.          
T Consensus        51 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----------------------~~~~~~~~~----------   97 (814)
T 3mkq_A           51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----------------------KVVDFEAHP----------   97 (814)
T ss_dssp             EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----------------------EEEEEECCS----------
T ss_pred             EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEecCC----------
Confidence            34689999999999999999999999999999988765                       345677888          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-cEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc-CCCeeec
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGER  188 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~  188 (408)
                        ..|++++|+|+  +.+|++++.||.|++||+.++ .....+..+.        +.+.       +++|+| ++..+  
T Consensus        98 --~~v~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--------~~v~-------~~~~~p~~~~~l--  156 (814)
T 3mkq_A           98 --DYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--------HFVM-------CVAFNPKDPSTF--  156 (814)
T ss_dssp             --SCEEEEEECSS--SSEEEEEETTSEEEEEEGGGTSEEEEEEECCS--------SCEE-------EEEEETTEEEEE--
T ss_pred             --CCEEEEEEeCC--CCEEEEEcCCCEEEEEECCCCceEEEEEcCCC--------CcEE-------EEEEEcCCCCEE--
Confidence              77999999765  789999999999999999986 5555554442        2344       789999 77777  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC--CCCEEEEe-cCCeEEEEeCCCCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                ++++.++.|++|| +..      ......+...+...+.+++|+|  ++.+|+++ .|+.|++||+++ .
T Consensus       157 ----------~~~~~dg~v~vwd-~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~  218 (814)
T 3mkq_A          157 ----------ASGCLDRTVKVWS-LGQ------STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-K  218 (814)
T ss_dssp             ----------EEEETTSEEEEEE-TTC------SSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-T
T ss_pred             ----------EEEeCCCeEEEEE-CCC------CcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-C
Confidence                      9999999999999 433      2222333244557899999999  99999999 899999999984 4


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      .....       +.+|...|.+++|+|++ .+|++++.||.|++||+.+++..    ..+..+            ...|.
T Consensus       219 ~~~~~-------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~~------------~~~v~  274 (814)
T 3mkq_A          219 SCVAT-------LEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVE----KTLNVG------------LERSW  274 (814)
T ss_dssp             EEEEE-------EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEE----EEECCS------------SSSEE
T ss_pred             cEEEE-------EcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEeecC------------CCcEE
Confidence            44433       56788999999999999 89999999999999999988654    445444            36899


Q ss_pred             EEEEccCCC--EEEEeCCCeEEEEECCC
Q 015363          346 DIKFARNGR--HILSRDYMTLKLWDINM  371 (408)
Q Consensus       346 ~~~~spdg~--~l~s~~d~~v~~wd~~~  371 (408)
                      +++|+|++.  +++++.++.+.+|++..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          275 CIATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             EEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             EEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence            999999987  67788888999999876

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=1.3e-27  Score=219.05  Aligned_cols=261  Identities=12%  Similarity=0.248  Sum_probs=184.2

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      .+|.+.|++++|+  +++|++|+.||+|++||+.+++                       ....+.+|.           
T Consensus       156 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-----------------------~~~~~~~h~-----------  199 (445)
T 2ovr_B          156 VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-----------------------CIHTLYGHT-----------  199 (445)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS-----------
T ss_pred             cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-----------------------EEEEECCCC-----------
Confidence            3566777777775  4567777777777777765543                       234566666           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       ..|.++.|.    +..+++++.|++|++||+.+++....+..+..        .+.       ++.+  ++..+     
T Consensus       200 -~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--------~v~-------~~~~--~~~~l-----  252 (445)
T 2ovr_B          200 -STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA--------AVR-------CVQY--DGRRV-----  252 (445)
T ss_dssp             -SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSS--------CEE-------EEEE--CSSCE-----
T ss_pred             -CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc--------cEE-------EEEE--CCCEE-----
Confidence             567777773    34677777778888888777776665554322        222       3344  55555     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             ++++.|+.|++|| +..      ..+...+ .+|...|.+++|  ++..++++ .|+.|++||+++.. ....
T Consensus       253 -------~~~~~dg~i~iwd-~~~------~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~  314 (445)
T 2ovr_B          253 -------VSGAYDFMVKVWD-PET------ETCLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHT  314 (445)
T ss_dssp             -------EEEETTSCEEEEE-GGG------TEEEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEE
T ss_pred             -------EEEcCCCEEEEEE-CCC------CcEeEEe-cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEE
Confidence                   9999999999999 433      3344444 688899999999  78899998 89999999999544 4333


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                             +.+|...+.++.++  + .+|++|+.||.|++||+++++..    ..+..+         ..|...|.+++|+
T Consensus       315 -------~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~---------~~~~~~v~~~~~~  371 (445)
T 2ovr_B          315 -------LTGHQSLTSGMELK--D-NILVSGNADSTVKIWDIKTGQCL----QTLQGP---------NKHQSAVTCLQFN  371 (445)
T ss_dssp             -------ECCCCSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEE----EEECST---------TSCSSCEEEEEEC
T ss_pred             -------EcCCcccEEEEEEe--C-CEEEEEeCCCeEEEEECCCCcEE----EEEccC---------CCCCCCEEEEEEC
Confidence                   56788888888874  5 68999999999999999988654    445442         2245789999996


Q ss_pred             cCCCEEEEeC-CCeEEEEECCCCCCceeee-----eecccccceEEecCCCeeee
Q 015363          351 RNGRHILSRD-YMTLKLWDINMDSGPVATF-----QVHEHLRPKVMHSSKNYFMG  399 (408)
Q Consensus       351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  399 (408)
                        +++|++|+ ||.|++||+.+ ++.++.+     .+|.+....+....++..++
T Consensus       372 --~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la  423 (445)
T 2ovr_B          372 --KNFVITSSDDGTVKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTKLVCA  423 (445)
T ss_dssp             --SSEEEEEETTSEEEEEETTT-CCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred             --CCEEEEEeCCCeEEEEECCC-CceeeeeeccccCCCCceEEEEEecCCEEEEE
Confidence              57898885 79999999998 7888888     35555555555433444433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=1.1e-28  Score=215.36  Aligned_cols=225  Identities=14%  Similarity=0.133  Sum_probs=162.3

Q ss_pred             ceeeccceEEEEECC--CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           31 EVQEVDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~--~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ..+|.+.|++++|+|  ++++||+|+.|++|+|||+.++..                     .....+.+|.        
T Consensus        53 l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~---------------------~~~~~~~~h~--------  103 (316)
T 3bg1_A           53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW---------------------EKSHEHAGHD--------  103 (316)
T ss_dssp             EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC---------------------CEEEEECCCS--------
T ss_pred             EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc---------------------eEEEEccCCC--------
Confidence            457999999999986  489999999999999999876532                     1344677888        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEE-EeccCCCCcccCCCCCeEeecCCceeeEEccCCCe--
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC--  185 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--  185 (408)
                          ..|++++|+|+.++.+|++++.|++|++||+..+.... ......+      ...+.       .+.|+|++..  
T Consensus       104 ----~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h------~~~v~-------~~~~~~~~~~~~  166 (316)
T 3bg1_A          104 ----SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH------TIGCN-------AVSWAPAVVPGS  166 (316)
T ss_dssp             ----SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS------SSCBC-------CCEECCCCCC--
T ss_pred             ----CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc------cCCcc-------eEEEccccCCcc
Confidence                77999999887667899999999999999998763221 1111111      11222       5677776321  


Q ss_pred             -eecccccc--cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC----CEEEEe-cCCeEE
Q 015363          186 -GERNFGCA--SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG----ETFISA-DDLRIN  257 (408)
Q Consensus       186 -l~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----~~l~~~-~d~~i~  257 (408)
                       +....+..  ...++++++.|+.|++|| +.....   ..+... +.+|...|++++|+|++    .+|+++ .|++|+
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd-~~~~~~---~~~~~~-l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~  241 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWK-EEEDGQ---WKEEQK-LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF  241 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEE-ECTTSC---EEEEEC-CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred             ccccccccCccccceEEEecCCCeEEEEE-eCCCCc---cceeee-cccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence             00000000  113469999999999999 532110   122333 37899999999999986    789998 999999


Q ss_pred             EEeCCCCCc---eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 015363          258 LWNLEISNQ---SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  314 (408)
Q Consensus       258 iwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  314 (408)
                      +||++....   ....       +..|...|.+++|+|++ .+||+++.|++|++|+...
T Consensus       242 iw~~~~~~~~~~~~~~-------~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          242 IWTCDDASSNTWSPKL-------LHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEECSSTTCCCCBCCE-------EEECSSCEEEEEECTTT-CCEEEEESSSCEEEEEECT
T ss_pred             EEEccCccccchhhhh-------hhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEECC
Confidence            999985211   1111       34578899999999999 9999999999999999763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=4.3e-29  Score=220.62  Aligned_cols=263  Identities=13%  Similarity=0.081  Sum_probs=192.0

Q ss_pred             cccceeeecccCcCcccceeeccceEEEEECCCCC-eEEEeecCCeEEEEEe-CCCCCCCCcccccccccccccCCCccc
Q 015363           14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFER-TDTRDNGGQRRDLEMMDYSMSRHPEFR   91 (408)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~   91 (408)
                      -..|++..............|...|++++|+|+++ +|++|+.||.|++|++ .++..                      
T Consensus        35 v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~----------------------   92 (342)
T 1yfq_A           35 LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF----------------------   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE----------------------
T ss_pred             EEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce----------------------
Confidence            44577664211111234458999999999999999 9999999999999998 76542                      


Q ss_pred             eeeeecc--CCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCC---------CcEEEEeccCCCCcc
Q 015363           92 YKTEFQS--HEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE---------KKVKKVFDWNVHPEK  160 (408)
Q Consensus        92 ~~~~~~~--h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~---------~~~~~~~~~~~~~~~  160 (408)
                        ..+.+  |.            ..|.+++|+|   +.+|++++.|+.|++||+.+         ++....+.       
T Consensus        93 --~~~~~~~~~------------~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------  148 (342)
T 1yfq_A           93 --QALTNNEAN------------LGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-------  148 (342)
T ss_dssp             --EECBSCCCC------------SCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-------
T ss_pred             --EeccccCCC------------CceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-------
Confidence              35666  77            7799999976   56999999999999999986         33222221       


Q ss_pred             cCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeec-cccccccccceeeccccccceEEE
Q 015363          161 AAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTS-QETNLVAGCRRIYAHAHDYHINSI  239 (408)
Q Consensus       161 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i  239 (408)
                        ..+.+.       ++.|+|++  +            ++++.++.|++|| +.. ...     ........|...+.++
T Consensus       149 --~~~~v~-------~~~~~~~~--l------------~~~~~d~~i~i~d-~~~~~~~-----~~~~~~~~~~~~i~~i  199 (342)
T 1yfq_A          149 --VKNKIF-------TMDTNSSR--L------------IVGMNNSQVQWFR-LPLCEDD-----NGTIEESGLKYQIRDV  199 (342)
T ss_dssp             --SCCCEE-------EEEECSSE--E------------EEEESTTEEEEEE-SSCCTTC-----CCEEEECSCSSCEEEE
T ss_pred             --eCCceE-------EEEecCCc--E------------EEEeCCCeEEEEE-CCccccc-----cceeeecCCCCceeEE
Confidence              133344       68888877  5            8889999999999 543 211     1111235677889999


Q ss_pred             EeCC-CCCEEEEe-cCCeEEEEeCCCC-----CceeeEeecCCC--cccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEE
Q 015363          240 SNNS-DGETFISA-DDLRINLWNLEIS-----NQSFNIVDVKPA--NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  310 (408)
Q Consensus       240 ~~~~-~~~~l~~~-~d~~i~iwd~~~~-----~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  310 (408)
                      +|+| ++++++++ .|+.|++|+++..     ......+.....  .-..|...|.+++|+|++ .+|++++.||.|++|
T Consensus       200 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vw  278 (342)
T 1yfq_A          200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCW  278 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEE
T ss_pred             EECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEE
Confidence            9999 99999999 9999999999855     133333211000  001234489999999999 899999999999999


Q ss_pred             EcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCe-EEEEEC
Q 015363          311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMT-LKLWDI  369 (408)
Q Consensus       311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~-v~~wd~  369 (408)
                      |+++++.+    ..+.+|           |...|.+++  |++++|++++ |+. .+.|..
T Consensus       279 d~~~~~~~----~~~~~~-----------h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          279 NLQTRKKI----KNFAKF-----------NEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ETTTTEEE----EECCCC-----------SSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             cCccHhHh----hhhhcc-----------cCCCceEec--CCCCeEEEEecCCcccccccc
Confidence            99988654    455544           147899999  9999999985 788 555553

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.1e-28  Score=226.22  Aligned_cols=283  Identities=13%  Similarity=0.164  Sum_probs=184.4

Q ss_pred             cceEEEEECCCC--CeEEEeecCCeEEEEEeCCCCCCCCcccccccccc-------cccCCCcc---------ceeee-e
Q 015363           36 DIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDY-------SMSRHPEF---------RYKTE-F   96 (408)
Q Consensus        36 ~~V~~~~~s~~~--~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-------~~~~~p~~---------~~~~~-~   96 (408)
                      +.|++++|+|++  .+|++|+.||.|+||++.++.............+.       ....-|..         ..... .
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            889999999998  79999999999999998764321000000000000       00000000         00111 2


Q ss_pred             ccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCce
Q 015363           97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAI  175 (408)
Q Consensus        97 ~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  175 (408)
                      .+|.            ..|.+++|+|+  +.+|+++ .|+.|++||+.+ ++.......... ......+.+.       
T Consensus       174 ~~h~------------~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~-------  230 (447)
T 3dw8_B          174 NAHT------------YHINSISINSD--YETYLSA-DDLRINLWHLEITDRSFNIVDIKPA-NMEELTEVIT-------  230 (447)
T ss_dssp             SCCS------------SCCCEEEECTT--SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCS-SGGGCCCCEE-------
T ss_pred             cCCC------------cceEEEEEcCC--CCEEEEe-CCCeEEEEECCCCCceeeeeecccc-cccccCcceE-------
Confidence            4566            77999999764  8899998 899999999994 444443322110 0111133444       


Q ss_pred             eeEEccCC-CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeecccccc------------ceEEEEeC
Q 015363          176 PKSYMANG-GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY------------HINSISNN  242 (408)
Q Consensus       176 ~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~i~~~  242 (408)
                      +++|+|++ ..+            ++++.|+.|++|| +......  ......+ ..|..            .|.+++|+
T Consensus       231 ~~~~~p~~~~~l------------~s~~~dg~i~iwd-~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s  294 (447)
T 3dw8_B          231 AAEFHPNSCNTF------------VYSSSKGTIRLCD-MRASALC--DRHSKLF-EEPEDPSNRSFFSEIISSISDVKFS  294 (447)
T ss_dssp             EEEECSSCTTEE------------EEEETTSCEEEEE-TTTCSSS--CTTCEEE-CCC-----CCHHHHHTTCEEEEEEC
T ss_pred             EEEECCCCCcEE------------EEEeCCCeEEEEE-CcCCccc--cceeeEe-ccCCCccccccccccCceEEEEEEC
Confidence            78999998 776            9999999999999 5442210  0112222 44544            89999999


Q ss_pred             CCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCC---------------eEEEEEcCCCCceEEEEeCCCeE
Q 015363          243 SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEV---------------ITSAEFHPTHCNMLAYSSSKGSI  307 (408)
Q Consensus       243 ~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~p~~~~~l~s~~~dg~i  307 (408)
                      |++++|+++.++.|++||++........       +..|...               +..++|+|++ .+|++|+.||.|
T Consensus       295 ~~g~~l~~~~~~~v~iwd~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v  366 (447)
T 3dw8_B          295 HSGRYMMTRDYLSVKVWDLNMENRPVET-------YQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFF  366 (447)
T ss_dssp             TTSSEEEEEESSEEEEEETTCCSSCSCC-------EESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEE
T ss_pred             CCCCEEEEeeCCeEEEEeCCCCccccce-------eeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEE
Confidence            9999999993399999999853444433       3444321               3349999999 899999999999


Q ss_pred             EEEEcCCCceecccccccccccCCCCc---------------------cccccccceeEEEEEccCCCEEEEeCCCeEEE
Q 015363          308 RLIDMRQSALCDTHSKLFEEQEAPGTR---------------------SFFTEIIASISDIKFARNGRHILSRDYMTLKL  366 (408)
Q Consensus       308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~  366 (408)
                      ++||+.+++..     .+..+..+...                     .....+...|..++|+|++.+||+++.+.+++
T Consensus       367 ~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~  441 (447)
T 3dw8_B          367 RMFDRNTKRDI-----TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYI  441 (447)
T ss_dssp             EEEETTTCCEE-----EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEE
T ss_pred             EEEEcCCCcce-----eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeee
Confidence            99999988653     22222111000                     00112346789999999999999997767999


Q ss_pred             EECC
Q 015363          367 WDIN  370 (408)
Q Consensus       367 wd~~  370 (408)
                      |..+
T Consensus       442 ~~~~  445 (447)
T 3dw8_B          442 FQDK  445 (447)
T ss_dssp             EECC
T ss_pred             eccc
Confidence            9764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=1.2e-27  Score=219.27  Aligned_cols=243  Identities=15%  Similarity=0.267  Sum_probs=191.6

Q ss_pred             cceeeccce-EEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V-~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ...+|.+.| +|+.+  +|++|++|+.||.|++||+.+++                       .+..+.+|.        
T Consensus       113 ~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------  159 (445)
T 2ovr_B          113 VLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGK-----------------------CLRTLVGHT--------  159 (445)
T ss_dssp             EEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC-----------------------EEEECCCCS--------
T ss_pred             EecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCc-----------------------EEEEEcCCC--------
Confidence            345788865 65554  68999999999999999988665                       346778888        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          ..|.+++|+    +.++++++.||+|++||+.+++....+..+..        .+.       ++.+  ++..+  
T Consensus       160 ----~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~--------~v~-------~~~~--~~~~l--  212 (445)
T 2ovr_B          160 ----GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHTLYGHTS--------TVR-------CMHL--HEKRV--  212 (445)
T ss_dssp             ----SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEEECCCSS--------CEE-------EEEE--ETTEE--
T ss_pred             ----CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEEECCCCC--------cEE-------EEEe--cCCEE--
Confidence                779999995    45999999999999999999988777765433        233       3455  34555  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                ++++.|+.|++|| +..      .++...+ .+|...|.++++  ++++++++ .|+.|++||+++. ..
T Consensus       213 ----------~s~s~dg~i~~wd-~~~------~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-~~  271 (445)
T 2ovr_B          213 ----------VSGSRDATLRVWD-IET------GQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-TC  271 (445)
T ss_dssp             ----------EEEETTSEEEEEE-SSS------CCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT-EE
T ss_pred             ----------EEEeCCCEEEEEE-CCC------CcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC-cE
Confidence                      9999999999999 433      2333443 788899999999  67889988 9999999999844 44


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      ...       +.+|...|.+++|  ++ .++++++.|+.|++||+++++..    ..+.+|            ...+.++
T Consensus       272 ~~~-------~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~------------~~~v~~~  325 (445)
T 2ovr_B          272 LHT-------LQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCI----HTLTGH------------QSLTSGM  325 (445)
T ss_dssp             EEE-------ECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEE----EEECCC------------CSCEEEE
T ss_pred             eEE-------ecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEE----EEEcCC------------cccEEEE
Confidence            433       5678899999999  67 88999999999999999998654    555555            4677777


Q ss_pred             EEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363          348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       348 ~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      .+  ++.+|++|+ |+.|++||+++ ++++..+.++
T Consensus       326 ~~--~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~  358 (445)
T 2ovr_B          326 EL--KDNILVSGNADSTVKIWDIKT-GQCLQTLQGP  358 (445)
T ss_dssp             EE--ETTEEEEEETTSCEEEEETTT-CCEEEEECST
T ss_pred             EE--eCCEEEEEeCCCeEEEEECCC-CcEEEEEccC
Confidence            76  467888885 79999999997 7899999873

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.8e-28  Score=215.37  Aligned_cols=286  Identities=8%  Similarity=0.073  Sum_probs=180.3

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|.+.|++++|+|||++||+|+.++ ++||+..+...                         ....+.           
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-------------------------~~~~~~-----------   58 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-------------------------IMSQEM-----------   58 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-------------------------EEEEEC-----------
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-------------------------eeeeec-----------
Confidence            56899999999999999999998775 78999876542                         111111           


Q ss_pred             ccceeEEEEeecCCCcEE-EEEeCCCeEEEEEcCCCcEEEEeccCCCCc--ccCCCCCeEeecCCceeeEEccCC-Ceee
Q 015363          112 EEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPE--KAAGNGPIFGSHVSAIPKSYMANG-GCGE  187 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~-~~l~  187 (408)
                       ..+..+++.++  +..+ ++++.|++|++||+.+++....+..+....  .+.++ .+....+..+.++-..++ +.+.
T Consensus        59 -~~~~~~~~~~~--~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~~i~i~d~~~~~~~~~  134 (355)
T 3vu4_A           59 -RHLSKVRMLHR--TNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE-FIVVSYGDVISVFKFGNPWKRIT  134 (355)
T ss_dssp             -SCCCEEEECTT--SSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSS-EEEEEETTEEEEEESSTTCCBSS
T ss_pred             -CCeEEEEEcCC--CCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCC-EEEEEEcCEEEEEECCCCceeeE
Confidence             23677788655  4455 567788999999999998877665432111  11111 111112222233322333 2222


Q ss_pred             cccc------cccCccccC-CCCCceeeeceeeeccccc---------ccccc-ceeeccccccceEEEEeCCCCCEEEE
Q 015363          188 RNFG------CASNDSSFP-PGGVSSLRLPVVVTSQETN---------LVAGC-RRIYAHAHDYHINSISNNSDGETFIS  250 (408)
Q Consensus       188 ~~~~------~~~~~~~~~-~~~~~~i~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~  250 (408)
                      .+..      .....++++ ++.++.|++|| +......         ....+ ...+ .+|...|++++|+|++++|++
T Consensus       135 ~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd-~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~~~s~~g~~l~s  212 (355)
T 3vu4_A          135 DDIRFGGVCEFSNGLLVYSNEFNLGQIHITK-LQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMVRLNRKSDMVAT  212 (355)
T ss_dssp             CCEEEEEEEEEETTEEEEEESSCTTCEEEEE-CCC------------------CCEEE-CCCSSCEEEEEECTTSSEEEE
T ss_pred             EeccCCceEEEEccEEEEeCCCcCcEEEEEE-CCCCCccccccccccccccCcccEEE-EccCCceEEEEECCCCCEEEE
Confidence            2211      000122333 78999999999 5442200         00011 3443 899999999999999999999


Q ss_pred             e-cCCe-EEEEeCCCCCceeeEeecCCCccc-C-CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccc
Q 015363          251 A-DDLR-INLWNLEISNQSFNIVDVKPANME-D-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE  326 (408)
Q Consensus       251 ~-~d~~-i~iwd~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  326 (408)
                      + .|++ |++||+++.. ....       +. + |...|++++|+|++ .+|++++.|++|++||++......  ...+.
T Consensus       213 ~s~d~~~v~iwd~~~~~-~~~~-------~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~--~~~~~  281 (355)
T 3vu4_A          213 CSQDGTIIRVFKTEDGV-LVRE-------FRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNK--RHALK  281 (355)
T ss_dssp             EETTCSEEEEEETTTCC-EEEE-------EECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCC--SEETT
T ss_pred             EeCCCCEEEEEECCCCc-EEEE-------EEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcc--ccccc
Confidence            9 9998 9999999544 3333       33 4 88999999999999 999999999999999998763211  01111


Q ss_pred             c-----ccCCC--C--ccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          327 E-----QEAPG--T--RSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       327 ~-----~~~~~--~--~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      .     +....  .  ..+..........++|++||++|+++. ||.+++|++..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          282 GWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             TTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             ceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            1     00000  0  000011122346689999999999985 79999999875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=6.3e-29  Score=221.58  Aligned_cols=259  Identities=15%  Similarity=0.200  Sum_probs=185.6

Q ss_pred             cccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcccee
Q 015363           14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK   93 (408)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~   93 (408)
                      -..|++... +.........|.+.|++++|+|++++|++|+.||.|++||+.++..                        
T Consensus        66 i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------------------------  120 (368)
T 3mmy_A           66 VRCWEVQDS-GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA------------------------  120 (368)
T ss_dssp             EEEEEECTT-SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------------------------
T ss_pred             EEEEEcCCC-CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc------------------------
Confidence            455776531 1111124457999999999999999999999999999999887653                        


Q ss_pred             eeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCC
Q 015363           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS  173 (408)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  173 (408)
                      ..+.+|.            ..|.+++|+|++++.+|++++.|+.|++||+++++....+..+..                
T Consensus       121 ~~~~~~~------------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----------------  172 (368)
T 3mmy_A          121 IQIAQHD------------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER----------------  172 (368)
T ss_dssp             EEEEECS------------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSC----------------
T ss_pred             eeecccc------------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCC----------------
Confidence            2355676            779999997777788999999999999999999887766655432                


Q ss_pred             ceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCE----EE
Q 015363          174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET----FI  249 (408)
Q Consensus       174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~----l~  249 (408)
                        ..+.......+            ++++.++.+.+|+ +.......     ......+...+.++++.++...    ++
T Consensus       173 --~~~~~~~~~~~------------~~~~~~~~i~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (368)
T 3mmy_A          173 --CYCADVIYPMA------------VVATAERGLIVYQ-LENQPSEF-----RRIESPLKHQHRCVAIFKDKQNKPTGFA  232 (368)
T ss_dssp             --EEEEEEETTEE------------EEEEGGGCEEEEE-CSSSCEEE-----EECCCSCSSCEEEEEEEECTTSCEEEEE
T ss_pred             --ceEEEecCCee------------EEEeCCCcEEEEE-eccccchh-----hhccccccCCCceEEEcccCCCCCCeEE
Confidence              12333333344            7788899999999 54322111     1111223344555555554433    88


Q ss_pred             Ee-cCCeEEEEeCCCCCc--eeeEeecCCCcccCCcC------------CeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 015363          250 SA-DDLRINLWNLEISNQ--SFNIVDVKPANMEDLTE------------VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  314 (408)
Q Consensus       250 ~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~------------~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  314 (408)
                      ++ .|+.|++||++....  ....       +..|..            .|++++|+|++ .+|++++.||.|++||+++
T Consensus       233 ~~~~dg~i~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          233 LGSIEGRVAIHYINPPNPAKDNFT-------FKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             EEETTSEEEEEESSCSCHHHHSEE-------EECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTT
T ss_pred             EecCCCcEEEEecCCCCcccccee-------eeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCC
Confidence            88 999999999985532  2222       333443            79999999999 9999999999999999998


Q ss_pred             CceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363          315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~  369 (408)
                      ++.+    ..+.+|            ...|.+++|+|+|++|++++ |+..+.|++
T Consensus       305 ~~~~----~~~~~~------------~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          305 RTKL----KTSEQL------------DQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             TEEE----EECCCC------------SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             CcEE----EEecCC------------CCCceEEEECCCCCeEEEEecccccccccc
Confidence            8654    555555            47899999999999999984 554444444

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=1.3e-28  Score=219.08  Aligned_cols=206  Identities=14%  Similarity=0.126  Sum_probs=152.0

Q ss_pred             eccceEEEEECCCCCeEEE--eecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLAT--GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~s--g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      +...+.+++|||||++||+  ++.|++|+|||+.+++.                       +..+. |.           
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~-----------------------~~~~~-~~-----------  176 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE-----------------------KFEIE-TR-----------  176 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-----------------------EEEEE-CS-----------
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-----------------------EEEeC-CC-----------
Confidence            4456889999999998765  45789999999887653                       23333 44           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       ..|.+++|+|  +|+++++++.| .+++|+..+++.........+      ...+.       +++|+|+++.+     
T Consensus       177 -~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~------~~~v~-------~v~fspdg~~l-----  234 (365)
T 4h5i_A          177 -GEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDK------NWSLS-------KINFIADDTVL-----  234 (365)
T ss_dssp             -SCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCT------TEEEE-------EEEEEETTEEE-----
T ss_pred             -CceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCC------CCCEE-------EEEEcCCCCEE-----
Confidence             5699999975  48899888755 566777776665543333221      11233       68999999987     


Q ss_pred             cccCccccCCCCCc----eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363          192 CASNDSSFPPGGVS----SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       192 ~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                             ++++.++    .++.|+ +......  ....+. ..+|...|++++|+|+|++||+| .|++|+|||+++. +
T Consensus       235 -------~~~s~d~~~~~~i~~~~-~~~~~~~--~~~~~~-~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~-~  302 (365)
T 4h5i_A          235 -------IAASLKKGKGIVLTKIS-IKSGNTS--VLRSKQ-VTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL-S  302 (365)
T ss_dssp             -------EEEEESSSCCEEEEEEE-EETTEEE--EEEEEE-EESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT-E
T ss_pred             -------EEEecCCcceeEEeecc-cccceec--ceeeee-ecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC-c
Confidence                   6666555    577777 4332211  111122 36788999999999999999999 9999999999954 4


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                      ++..+      +.+|...|++++|+|+| ++||+|+.|++|+|||+...
T Consensus       303 ~~~~~------~~gH~~~V~~v~fSpdg-~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          303 MSKIF------KQAHSFAITEVTISPDS-TYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEE------TTSSSSCEEEEEECTTS-CEEEEEETTSEEEEEECCTT
T ss_pred             EEEEe------cCcccCCEEEEEECCCC-CEEEEEeCCCeEEEEEcCCC
Confidence            44321      57899999999999999 99999999999999999754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-28  Score=242.80  Aligned_cols=266  Identities=14%  Similarity=0.068  Sum_probs=188.7

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      .+|.+.|++++|+|++++||+|+.||+|+||+..+.+.                       .. ...|.           
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-----------------------~~-~~~~~-----------   58 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-----------------------VI-KLEDR-----------   58 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-----------------------EE-ECSSC-----------
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-----------------------EE-EcCCC-----------
Confidence            57899999999999999999999999999999765432                       11 12344           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       ..|.+++|+|   |++|++++.|++|++||+.+++....+..         .+.+.       +++|+|+++.+     
T Consensus        59 -~~V~~l~fsp---g~~L~S~s~D~~v~lWd~~~~~~~~~~~~---------~~~V~-------~v~~sp~g~~l-----  113 (902)
T 2oaj_A           59 -SAIKEMRFVK---GIYLVVINAKDTVYVLSLYSQKVLTTVFV---------PGKIT-------SIDTDASLDWM-----  113 (902)
T ss_dssp             -CCEEEEEEET---TTEEEEEETTCEEEEEETTTCSEEEEEEC---------SSCEE-------EEECCTTCSEE-----
T ss_pred             -CCEEEEEEcC---CCEEEEEECcCeEEEEECCCCcEEEEEcC---------CCCEE-------EEEECCCCCEE-----
Confidence             6799999986   56999999999999999999887766642         22344       78999999998     


Q ss_pred             cccCccccCCCCCceeeeceeeecccccccc--ccc---eeeccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCC
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVA--GCR---RIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEIS  264 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~  264 (408)
                             ++++.|+.|++|| +.........  ...   .. ..+|...|++++|+|+ +..+++| .|+.| +||++. 
T Consensus       114 -------~sgs~dg~V~lwd-~~~~~~~~~~i~~~~~~~~~-~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~-  182 (902)
T 2oaj_A          114 -------LIGLQNGSMIVYD-IDRDQLSSFKLDNLQKSSFF-PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE-  182 (902)
T ss_dssp             -------EEEETTSCEEEEE-TTTTEEEEEEECCHHHHHTC-SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT-
T ss_pred             -------EEEcCCCcEEEEE-CCCCccccceeccccccccc-cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC-
Confidence                   9999999999999 5442211000  000   11 2678899999999996 4688888 89999 999994 


Q ss_pred             CceeeEeecCC-----------CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecc-cccccccccCCC
Q 015363          265 NQSFNIVDVKP-----------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-HSKLFEEQEAPG  332 (408)
Q Consensus       265 ~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~  332 (408)
                      .+....+....           .....|...|++++|+|+| .+|++|+.|+.|++||+++++.+.. .+.....|....
T Consensus       183 ~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~  261 (902)
T 2oaj_A          183 NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQP  261 (902)
T ss_dssp             TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCT
T ss_pred             CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCC
Confidence            44444432110           0123456789999999999 9999999999999999998865411 111112231100


Q ss_pred             C-ccccccccceeEEEEEc----cCC-CEEEEeC-C-----CeEEEEEC
Q 015363          333 T-RSFFTEIIASISDIKFA----RNG-RHILSRD-Y-----MTLKLWDI  369 (408)
Q Consensus       333 ~-~~~~~~h~~~i~~~~~s----pdg-~~l~s~~-d-----~~v~~wd~  369 (408)
                      . ..--..|...|.+++|+    |++ .+|++|+ +     ..+.+|++
T Consensus       262 ~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          262 DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             TCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             cCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            0 00000245689999996    443 5677773 3     27999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=2.6e-28  Score=222.88  Aligned_cols=242  Identities=14%  Similarity=0.271  Sum_probs=181.0

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++|  ++++|++|+.||.|++||+.+++                       .+..+.+|.          
T Consensus       169 ~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~-----------------------~~~~~~~h~----------  213 (435)
T 1p22_A          169 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE-----------------------MLNTLIHHC----------  213 (435)
T ss_dssp             ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-----------------------EEEEECCCC----------
T ss_pred             EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc-----------------------EEEEEcCCC----------
Confidence            3469999999999  78899999999999999998765                       346677887          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE---EEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK---KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                        ..|.+++|+    +..+++++.|+.|++||+.+++..   .....+.        +.+.       ++.+  ++..+ 
T Consensus       214 --~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--------~~v~-------~~~~--~~~~l-  269 (435)
T 1p22_A          214 --EAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR--------AAVN-------VVDF--DDKYI-  269 (435)
T ss_dssp             --SCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS--------SCEE-------EEEE--ETTEE-
T ss_pred             --CcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC--------CcEE-------EEEe--CCCEE-
Confidence              779999994    349999999999999999987644   2232222        2233       3445  67776 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                                 ++++.|+.|++|| +..      ..+...+ .+|...|.++++  +++++++| .|+.|++||+++. .
T Consensus       270 -----------~s~~~dg~i~vwd-~~~------~~~~~~~-~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~-~  327 (435)
T 1p22_A          270 -----------VSASGDRTIKVWN-TST------CEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-A  327 (435)
T ss_dssp             -----------EEEETTSEEEEEE-TTT------CCEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-C
T ss_pred             -----------EEEeCCCeEEEEE-CCc------CcEEEEE-cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC-C
Confidence                       9999999999999 433      2334444 788899999998  46789998 9999999999954 4


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                      ....       +.+|...|.+++|  ++ .+|++|+.||.|++||++++.....       .........+.+|.+.|.+
T Consensus       328 ~~~~-------~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~-------~~~~~~~~~~~~h~~~v~~  390 (435)
T 1p22_A          328 CLRV-------LEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRA-------PAGTLCLRTLVEHSGRVFR  390 (435)
T ss_dssp             EEEE-------ECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTS-------CTTTTEEEEECCCSSCCCC
T ss_pred             EEEE-------EeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCccc-------cccchheeeccCCCCCeEE
Confidence            4433       5779999999999  56 7899999999999999976541100       0000011223455688999


Q ss_pred             EEEccCCCEEEEeC-CCeEEEEECCCC
Q 015363          347 IKFARNGRHILSRD-YMTLKLWDINMD  372 (408)
Q Consensus       347 ~~~spdg~~l~s~~-d~~v~~wd~~~~  372 (408)
                      ++|  ++.+|++|+ ||.|++||+.+.
T Consensus       391 l~~--~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          391 LQF--DEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             EEE--CSSCEEECCSSSEEEEEC----
T ss_pred             EEe--CCCEEEEEeCCCEEEEEECCCC
Confidence            999  788899986 799999999873

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.1e-28  Score=215.36  Aligned_cols=240  Identities=13%  Similarity=0.145  Sum_probs=175.6

Q ss_pred             eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC--cEEEEeccCCCCcccCCCCCeEee
Q 015363           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGS  170 (408)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~  170 (408)
                      +..+.+|.            ..|++++|+|+  +.+|++++.||.|++||+...  +....+..+        .+.+.  
T Consensus         4 ~~~~~~h~------------~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h--------~~~v~--   59 (379)
T 3jrp_A            4 VVIANAHN------------ELIHDAVLDYY--GKRLATCSSDKTIKIFEVEGETHKLIDTLTGH--------EGPVW--   59 (379)
T ss_dssp             -CCEEECC------------CCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEECCC--------SSCEE--
T ss_pred             cEEecCCc------------ccEEEEEEcCC--CCEEEEEECCCcEEEEecCCCcceeeeEecCC--------CCcEE--
Confidence            45678888            78999999755  889999999999999999844  444444433        22344  


Q ss_pred             cCCceeeEEccC--CCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC--CC
Q 015363          171 HVSAIPKSYMAN--GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GE  246 (408)
Q Consensus       171 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~  246 (408)
                           ++.|+++  +..+            ++++.|+.|++|| +.....    ..... ...|...|.+++|+|+  +.
T Consensus        60 -----~~~~~~~~~~~~l------------~s~~~dg~v~iwd-~~~~~~----~~~~~-~~~~~~~v~~~~~~~~~~~~  116 (379)
T 3jrp_A           60 -----RVDWAHPKFGTIL------------ASCSYDGKVLIWK-EENGRW----SQIAV-HAVHSASVNSVQWAPHEYGP  116 (379)
T ss_dssp             -----EEEECCGGGCSEE------------EEEETTSCEEEEE-EETTEE----EEEEE-ECCCSSCEEEEEECCGGGCS
T ss_pred             -----EEEeCCCCCCCEE------------EEeccCCEEEEEE-cCCCce----eEeee-ecCCCcceEEEEeCCCCCCC
Confidence                 6889876  8877            9999999999999 544221    12233 3678899999999999  89


Q ss_pred             EEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcC-------------CCCceEEEEeCCCeEEEEEc
Q 015363          247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-------------THCNMLAYSSSKGSIRLIDM  312 (408)
Q Consensus       247 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-------------~~~~~l~s~~~dg~i~iwd~  312 (408)
                      +|+++ .|+.|++||++........      .+..|...|.+++|+|             ++ .+|++++.|+.|++||+
T Consensus       117 ~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~  189 (379)
T 3jrp_A          117 LLLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKY  189 (379)
T ss_dssp             EEEEEETTSEEEEEECCTTSCCCEE------EEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEE
T ss_pred             EEEEecCCCcEEEEecCCCCceeeE------EecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEe
Confidence            99999 9999999999855332221      1567899999999999             57 89999999999999999


Q ss_pred             CCCceecccccccccccCCCCccccccccceeEEEEEccC---CCEEEEeC-CCeEEEEECCCCCC----ceeeeeeccc
Q 015363          313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRD-YMTLKLWDINMDSG----PVATFQVHEH  384 (408)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd---g~~l~s~~-d~~v~~wd~~~~~~----~~~~~~~~~~  384 (408)
                      +++.........+.+            |...|.+++|+|+   +.+|++++ |+.|++||+++...    .+.....|..
T Consensus       190 ~~~~~~~~~~~~~~~------------h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (379)
T 3jrp_A          190 NSDAQTYVLESTLEG------------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD  257 (379)
T ss_dssp             ETTTTEEEEEEEECC------------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS
T ss_pred             cCCCcceeeEEEEec------------ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCC
Confidence            877533222233444            4578999999999   89999985 79999999987321    1222222555


Q ss_pred             ccceEEecCCCeee
Q 015363          385 LRPKVMHSSKNYFM  398 (408)
Q Consensus       385 ~~~~~~~~~~~~~~  398 (408)
                      ....+....++..+
T Consensus       258 ~v~~~~~s~~g~~l  271 (379)
T 3jrp_A          258 VLWRASWSLSGNVL  271 (379)
T ss_dssp             CEEEEEECSSSCCE
T ss_pred             cEEEEEEcCCCCEE
Confidence            44444443444433

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.3e-27  Score=217.54  Aligned_cols=252  Identities=10%  Similarity=0.110  Sum_probs=183.2

Q ss_pred             eeccceEEEEECCCCCeE-EEeecCCeEEEEEeC--CCCCCCCcccccccccccccCCCccceeeeec--cCCccccccc
Q 015363           33 QEVDIISAIEFDKSGDHL-ATGDRGGRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ--SHEPEFDYLK  107 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l-~sg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~h~~~~~~~~  107 (408)
                      .|.+.|++++|+|++++| |+|+.||.|+||++.  ++..                       +..+.  .|.       
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-----------------------~~~~~~~~~~-------  149 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-----------------------LKLRKRFCFS-------  149 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-----------------------EEEEEEEECS-------
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-----------------------eeeeecccCC-------
Confidence            577789999999999986 999999999999998  5432                       23333  344       


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEE----EeccCCCCcccCCCCCeEeecCCceeeEEccC-
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK----VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN-  182 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-  182 (408)
                           ..|.+++|+|+  +.+|++++.|+.|++|++.+++...    .+..+        .+.+.       +++|+|+ 
T Consensus       150 -----~~v~~~~~sp~--~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h--------~~~v~-------~~~~sp~~  207 (450)
T 2vdu_B          150 -----KRPNAISIAED--DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH--------VSMLT-------DVHLIKDS  207 (450)
T ss_dssp             -----SCEEEEEECTT--SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC--------SSCEE-------EEEEEECT
T ss_pred             -----CCceEEEEcCC--CCEEEEEeCCCcEEEEecCCcccccccceeeecc--------cCceE-------EEEEcCCC
Confidence                 67999999754  8899999999999999998765432    11111        22344       7899999 


Q ss_pred             --CCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEE
Q 015363          183 --GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLW  259 (408)
Q Consensus       183 --~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iw  259 (408)
                        ++.+            ++++.|+.|++|| +..      ..+...+..+|...|++++|+ ++++|+++ .|+.|++|
T Consensus       208 ~~~~~l------------~s~~~d~~i~vwd-~~~------~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vw  267 (450)
T 2vdu_B          208 DGHQFI------------ITSDRDEHIKISH-YPQ------CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAW  267 (450)
T ss_dssp             TSCEEE------------EEEETTSCEEEEE-ESC------TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEE
T ss_pred             CCCcEE------------EEEcCCCcEEEEE-CCC------CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEE
Confidence              8887            9999999999999 533      233444346899999999999 99999999 99999999


Q ss_pred             eCCCCCceeeEeecCC----C--------------cccCCcCCeEEEEEcCCCCceEEEEe-CCCeEEEEEc--CCCcee
Q 015363          260 NLEISNQSFNIVDVKP----A--------------NMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDM--RQSALC  318 (408)
Q Consensus       260 d~~~~~~~~~~~~~~~----~--------------~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~--~~~~~~  318 (408)
                      |+++. +....+....    .              ........|.+++|+|++ .+|++++ .|+.|++|++  ..+..+
T Consensus       268 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l  345 (450)
T 2vdu_B          268 DWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDL  345 (450)
T ss_dssp             ETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCE
T ss_pred             ECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCce
Confidence            99954 4444432110    0              001234578999999999 8888888 8999999999  444211


Q ss_pred             cccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-------CCeEEEEECCCC
Q 015363          319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-------YMTLKLWDINMD  372 (408)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-------d~~v~~wd~~~~  372 (408)
                       ..+..+..+             ..|.+++|+|++.++++++       +..|.+|.++..
T Consensus       346 -~~~~~~~~~-------------~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          346 -ALKQIITFP-------------YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             -EEEEEEECS-------------SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             -eeccEeccC-------------CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence             112334443             5799999999654444433       345889987653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.2e-27  Score=203.17  Aligned_cols=235  Identities=13%  Similarity=0.077  Sum_probs=153.7

Q ss_pred             eccceEEEEECCC----CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccc---cccCCCccceeeeeccCCcccccc
Q 015363           34 EVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDY---SMSRHPEFRYKTEFQSHEPEFDYL  106 (408)
Q Consensus        34 h~~~V~~~~~s~~----~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~h~~~~~~~  106 (408)
                      |.+.|.+|+|+|+    ++++++++.+  +++|++.+++..   .......+.   .+.++|+.+.+..+.+|.      
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv---~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~------  178 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLV---SSSGTLSDQQVEVMTFAEDGGGKENQFLMP------  178 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEE---EEESSSTTCEEEEEEECTTSCEEEEEEECC------
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEE---EecccCCCCcEEEEEECCCCceeeeeccCC------
Confidence            4568999999999    9999998854  777887654321   000111111   355667777777888888      


Q ss_pred             cccccccceeEEEEee-cCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          107 KSLEIEEKINKIRWCQ-SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       107 ~~~~~~~~v~~v~~~p-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                            ..++.++|+| +.++.+|++++.|++|+|||+.++++...+..+...     ...+.       .++|+|+|+.
T Consensus       179 ------~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~-----v~~v~-------~vafSpdG~~  240 (356)
T 2w18_A          179 ------PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY-----QASVC-------HKAYSEMGLL  240 (356)
T ss_dssp             ------CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--------CCCE-------EEEEEETTEE
T ss_pred             ------CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc-----eeeeE-------EEEECCCCCE
Confidence                  5689999988 445789999999999999999999988877643211     00111       4567777765


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCC
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS  264 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~  264 (408)
                      +            ++++                             +..         ....+++| .|++|++||.. .
T Consensus       241 l------------vs~s-----------------------------~~~---------~~w~laSGs~D~tIklWd~~-t  269 (356)
T 2w18_A          241 F------------IVLS-----------------------------HPC---------AKESESLRSPVFQLIVINPK-T  269 (356)
T ss_dssp             E------------EEEC--------------------------------------------------CCEEEEEEETT-T
T ss_pred             E------------EEec-----------------------------cCC---------CcceeeccCCCcEEEEEECC-C
Confidence            4            1110                             000         01245677 89999999998 4


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce-
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS-  343 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-  343 (408)
                      ++.+.++.+..  ..+|...+.+..++  + .++|+++.|++|+|||+.+++..    .++.+|.            .. 
T Consensus       270 gk~l~v~~~~~--p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l----~tL~gH~------------~~v  328 (356)
T 2w18_A          270 TLSVGVMLYCL--PPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCT----ALLPPVS------------DQH  328 (356)
T ss_dssp             TEEEEEEEECC--CTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEE----EEECCC--------------CC
T ss_pred             CEEEEEEEeec--cCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcEE----EEecCCC------------CCe
Confidence            44443321100  13565555544444  6 78999999999999999999765    6676663            33 


Q ss_pred             eEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363          344 ISDIKFARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       344 i~~~~~spdg~~l~s~~-d~~v~~wd~  369 (408)
                      +..++|+|||++|++|+ |++|+|||+
T Consensus       329 vs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          329 WSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEecC
Confidence            44689999999999996 799999996

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-27  Score=215.61  Aligned_cols=251  Identities=10%  Similarity=0.079  Sum_probs=176.9

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      .+|.+.|.+++|||+|++||+++.||.|+||+.++                         .+..+. |.....       
T Consensus        82 ~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------------------------~l~~l~-~~~~~~-------  128 (588)
T 2j04_A           82 SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------------------------MLTNLD-SKGNLS-------  128 (588)
T ss_dssp             TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-------------------------EEEECC-CSSCST-------
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------------------------eeeecc-CCCccc-------
Confidence            46788999999999999999999999999999432                         223344 441000       


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE-------EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-------KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  184 (408)
                      ...|.+++|+|+  |++||+|+.||+|++||+.++..       ...+..+...    ..+.|.       +++|+|+| 
T Consensus       129 ~~sv~svafSPD--G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g----h~~~V~-------sVawSPdg-  194 (588)
T 2j04_A          129 SRTYHCFEWNPI--ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG----SKDWVT-------HIVWYEDV-  194 (588)
T ss_dssp             TTCEEEEEECSS--SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT----CCCCEE-------EEEEETTE-
T ss_pred             cccEEEEEEcCC--CCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc----ccccEE-------EEEEcCCc-
Confidence            035999999765  89999999999999999998752       3443222111    123566       79999999 


Q ss_pred             eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCC
Q 015363          185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEIS  264 (408)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~  264 (408)
                       +            ++++.|+.|++|+ +.....   ....+.+..+|...|.+++|+  ++.||++.+++|++||+. +
T Consensus       195 -L------------aass~D~tVrlWd-~~~~~~---~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~-~  254 (588)
T 2j04_A          195 -L------------VAALSNNSVFSMT-VSASSH---QPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLK-N  254 (588)
T ss_dssp             -E------------EEEETTCCEEEEC-CCSSSS---CCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETT-T
T ss_pred             -E------------EEEeCCCeEEEEE-CCCCcc---ccceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECC-C
Confidence             5            7888899999999 544221   111122224677889999999  689998867999999999 3


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEE--cCCCCceEEEEeCCCeEEEEEcCCCc-----ee----cccccccccccCCCC
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAYSSSKGSIRLIDMRQSA-----LC----DTHSKLFEEQEAPGT  333 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~-----~~----~~~~~~~~~~~~~~~  333 (408)
                      ++....       ..+|...+..++|  +|++ ..+++++.||+ ++|....-.     ..    ++.++.+...  ...
T Consensus       255 ~~~~~~-------~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~--g~~  323 (588)
T 2j04_A          255 YSISSL-------KTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTI--WNE  323 (588)
T ss_dssp             TEEEEE-------ECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTT--TTS
T ss_pred             CeEEEE-------EcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECC--CCc
Confidence            433222       2379999999999  9999 99999999999 999975211     00    1111111110  011


Q ss_pred             ccccccccceeEEEEEccCCCEEEEeCC
Q 015363          334 RSFFTEIIASISDIKFARNGRHILSRDY  361 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg~~l~s~~d  361 (408)
                      ...+.+ ...|.+++|||||+.+|++++
T Consensus       324 l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          324 FNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            222333 677999999999999998853

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.1e-26  Score=211.60  Aligned_cols=233  Identities=15%  Similarity=0.218  Sum_probs=171.2

Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCC----------CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE----------KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA  181 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  181 (408)
                      ...|++++|+|. ++.+|++++.||.|++|++..          ......+..+.        +.+.       +++|+|
T Consensus       128 ~~~v~~l~~~p~-~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~--------~~v~-------~l~~~~  191 (430)
T 2xyi_A          128 EGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ--------KEGY-------GLSWNP  191 (430)
T ss_dssp             SSCCSEEEEETT-EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS--------SCCC-------CEEECT
T ss_pred             CCcEEEEEECCC-CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC--------CCeE-------EEEeCC
Confidence            378999999863 256899999999999999986          23333333222        1222       789999


Q ss_pred             CCC-eeecccccccCccccCCCCCceeeeceeeecccc-ccccccceeeccccccceEEEEeCC-CCCEEEEe-cCCeEE
Q 015363          182 NGG-CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET-NLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRIN  257 (408)
Q Consensus       182 ~~~-~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~  257 (408)
                      ++. .+            ++++.++.|++|+ +..... .........+ ..|...|.+++|+| ++.+|+++ .|+.|+
T Consensus       192 ~~~~~l------------~s~~~dg~i~vwd-~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~  257 (430)
T 2xyi_A          192 NLNGYL------------LSASDDHTICLWD-INATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLM  257 (430)
T ss_dssp             TSTTEE------------EEECTTSCEEEEE-TTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             CCCCeE------------EEEeCCCeEEEEe-CCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence            988 66            9999999999999 544211 1111223333 68889999999999 67888888 899999


Q ss_pred             EEeCCCCC--ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcc
Q 015363          258 LWNLEISN--QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS  335 (408)
Q Consensus       258 iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  335 (408)
                      +||++...  .....       +..|...|++++|+|++..+|++|+.||.|++||+++...   ++..+..|       
T Consensus       258 i~d~~~~~~~~~~~~-------~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---~~~~~~~h-------  320 (430)
T 2xyi_A          258 IWDTRNNNTSKPSHT-------VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---KLHSFESH-------  320 (430)
T ss_dssp             EEETTCSCSSSCSEE-------EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEECC-------
T ss_pred             EEECCCCCCCcceeE-------eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---CeEEeecC-------
Confidence            99999653  23222       4578899999999999955899999999999999997532   22455545       


Q ss_pred             ccccccceeEEEEEccCCC-EEEEe-CCCeEEEEECCCCC-------------CceeeeeecccccceEEecCCCe
Q 015363          336 FFTEIIASISDIKFARNGR-HILSR-DYMTLKLWDINMDS-------------GPVATFQVHEHLRPKVMHSSKNY  396 (408)
Q Consensus       336 ~~~~h~~~i~~~~~spdg~-~l~s~-~d~~v~~wd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  396 (408)
                           ...|.+++|+|+++ +|+++ .|+.|++||+...+             .++..+.+|......+....++.
T Consensus       321 -----~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  391 (430)
T 2xyi_A          321 -----KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  391 (430)
T ss_dssp             -----SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST
T ss_pred             -----CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC
Confidence                 57899999999985 57777 47999999998632             56667777777655555444444

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.9e-25  Score=201.09  Aligned_cols=252  Identities=9%  Similarity=0.111  Sum_probs=187.1

Q ss_pred             eeeccceEEEEECCCCCeE-EEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l-~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      +.+...+.+++|+|++++| ++++.|+.|++||+.+++.                       ...+..+           
T Consensus        28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-----------------------~~~~~~~-----------   73 (391)
T 1l0q_A           28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----------------------IATVPAG-----------   73 (391)
T ss_dssp             EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----------------------EEEEECS-----------
T ss_pred             eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-----------------------EEEEECC-----------
Confidence            3445668999999999976 6777999999999877653                       2333333           


Q ss_pred             cccceeEEEEeecCCCcEEEEE-eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          111 IEEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                        ..+.+++|+|+  +++++++ +.|+.|++||+.+++.......+.         .+.       .++|+|+++.+   
T Consensus        74 --~~v~~~~~spd--g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---------~~~-------~~~~s~dg~~l---  130 (391)
T 1l0q_A           74 --SSPQGVAVSPD--GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---------SPL-------GLALSPDGKKL---  130 (391)
T ss_dssp             --SSEEEEEECTT--SSEEEEEETTTTEEEEEETTTTEEEEEEECSS---------SEE-------EEEECTTSSEE---
T ss_pred             --CCccceEECCC--CCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---------Ccc-------eEEECCCCCEE---
Confidence              34999999754  7777554 577999999999998777665432         122       68999999875   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEE-EEe-cCCeEEEEeCCCCCce
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~  267 (408)
                              +++++.++.|++|| +..      .+....+ ..+ ..+.+++|+|+++.+ +++ .++.|++||+++ ...
T Consensus       131 --------~~~~~~~~~v~~~d-~~~------~~~~~~~-~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~  192 (391)
T 1l0q_A          131 --------YVTNNGDKTVSVIN-TVT------KAVINTV-SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSV  192 (391)
T ss_dssp             --------EEEETTTTEEEEEE-TTT------TEEEEEE-ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEE
T ss_pred             --------EEEeCCCCEEEEEE-CCC------CcEEEEE-ecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeE
Confidence                    35778899999999 432      2222332 233 457899999999887 456 799999999984 444


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe---CCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      ...+        .+...+.+++|+|++ ++|++++   .++.|++||+++++..    ..+..+             ..+
T Consensus       193 ~~~~--------~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~----~~~~~~-------------~~~  246 (391)
T 1l0q_A          193 IDTV--------KVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKIT----ARIPVG-------------PDP  246 (391)
T ss_dssp             EEEE--------ECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEE----EEEECC-------------SSE
T ss_pred             EEEE--------ecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeEE----EEEecC-------------CCc
Confidence            4332        245578999999999 7777776   6899999999988553    444444             357


Q ss_pred             EEEEEccCCCEE-EEeC-CCeEEEEECCCCCCceeeeeecccc
Q 015363          345 SDIKFARNGRHI-LSRD-YMTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       345 ~~~~~spdg~~l-~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                      .+++|+|+|++| ++++ |+.|++||+.+ ++.++.+..|...
T Consensus       247 ~~~~~s~dg~~l~~s~~~d~~v~v~d~~~-~~~~~~~~~~~~~  288 (391)
T 1l0q_A          247 AGIAVTPDGKKVYVALSFXNTVSVIDTAT-NTITATMAVGKNP  288 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECSSSE
T ss_pred             cEEEEccCCCEEEEEcCCCCEEEEEECCC-CcEEEEEECCcCC
Confidence            899999999988 4554 69999999997 7888888776543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=8.4e-26  Score=199.65  Aligned_cols=219  Identities=11%  Similarity=0.091  Sum_probs=163.3

Q ss_pred             eeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc----EEEEeccCCCCcccCCCCCeEee
Q 015363           95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIFGS  170 (408)
Q Consensus        95 ~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~  170 (408)
                      .+.+|.            +.|++++|+|+  +.+|++++.||.|++||+.++.    ....+..+        .+.+.  
T Consensus         6 ~~~gH~------------~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--------~~~v~--   61 (351)
T 3f3f_A            6 FDSGHD------------DLVHDVVYDFY--GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH--------DSSIV--   61 (351)
T ss_dssp             EECCCS------------SCEEEEEECSS--SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC--------SSCEE--
T ss_pred             cCcccc------------cceeEEEEcCC--CCEEEEeeCCCeEEEEECCCCCCcceecceeccC--------CCcEE--
Confidence            467888            78999999765  8899999999999999998763    33333333        22344  


Q ss_pred             cCCceeeEEcc--CCCeeecccccccCccccCCCCCceeeeceeeecccccccc---ccceeeccccccceEEEEeCCC-
Q 015363          171 HVSAIPKSYMA--NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVA---GCRRIYAHAHDYHINSISNNSD-  244 (408)
Q Consensus       171 ~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~i~~~~~-  244 (408)
                           +++|+|  ++..+            ++++.|+.|++|| +.........   .+...+ ..|...|.+++|+|+ 
T Consensus        62 -----~~~~~~~~d~~~l------------~s~~~dg~v~vwd-~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~  122 (351)
T 3f3f_A           62 -----AIDWASPEYGRII------------ASASYDKTVKLWE-EDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAH  122 (351)
T ss_dssp             -----EEEECCGGGCSEE------------EEEETTSCEEEEE-ECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGG
T ss_pred             -----EEEEcCCCCCCEE------------EEEcCCCeEEEEe-cCCCcccccccCcceeeee-cccCCceeEEEEcCCC
Confidence                 789998  58887            9999999999999 6543221111   233333 688999999999999 


Q ss_pred             -CCEEEEe-cCCeEEEEeCCCCCceeeE-----eecCCCcccCCcCCeEEEEEcCC---CCceEEEEeCCCeEEEEEcCC
Q 015363          245 -GETFISA-DDLRINLWNLEISNQSFNI-----VDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQ  314 (408)
Q Consensus       245 -~~~l~~~-~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~~dg~i~iwd~~~  314 (408)
                       +.+|+++ .|+.|++||+++.......     ..........|...+.+++|+|+   + .+|++++.|+.+.+|+...
T Consensus       123 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~  201 (351)
T 3f3f_A          123 LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKD  201 (351)
T ss_dssp             GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTT
T ss_pred             CCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCC
Confidence             9999998 9999999999854432111     01111122367888999999997   6 8999999999998888777


Q ss_pred             CceecccccccccccCCCCccccccccceeEEEEEccCC----CEEEEeC-CCeEEEEECCC
Q 015363          315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG----RHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg----~~l~s~~-d~~v~~wd~~~  371 (408)
                      +...  .+..+.+|            ...|.+++|+|++    ++|++|+ |+.|++||++.
T Consensus       202 ~~~~--~~~~~~~h------------~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          202 GKLH--VAAKLPGH------------KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             SCEE--EEEECCCC------------CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             Ccee--eeeecCCC------------CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            6431  12344444            5789999999998    7899885 79999999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=2e-25  Score=203.67  Aligned_cols=259  Identities=7%  Similarity=-0.001  Sum_probs=190.4

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .....+.+++|+|++.++++++.++.|++||..+++..    +              ......+.+|.            
T Consensus       120 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~----~--------------~~~~~~~~~~~------------  169 (433)
T 3bws_A          120 KTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV----R--------------LSPPEKYKKKL------------  169 (433)
T ss_dssp             ECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE----E--------------ECCCHHHHTTC------------
T ss_pred             cCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe----e--------------ecCcccccccC------------
Confidence            34456779999998888899999999999998876531    0              00001344666            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..|.+++|+|+  +.++++++.|+.|++||+.+++....+..+..        .+.       .++|+|+++.+      
T Consensus       170 ~~v~~~~~~~~--~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~--------~~~-------~~~~~~~~~~l------  226 (433)
T 3bws_A          170 GFVETISIPEH--NELWVSQMQANAVHVFDLKTLAYKATVDLTGK--------WSK-------ILLYDPIRDLV------  226 (433)
T ss_dssp             CEEEEEEEGGG--TEEEEEEGGGTEEEEEETTTCCEEEEEECSSS--------SEE-------EEEEETTTTEE------
T ss_pred             CceeEEEEcCC--CEEEEEECCCCEEEEEECCCceEEEEEcCCCC--------Cee-------EEEEcCCCCEE------
Confidence            67999999654  78999999999999999999887776654321        222       68999999876      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c--------CCeEEEEeCCC
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--------DLRINLWNLEI  263 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~--------d~~i~iwd~~~  263 (408)
                           +++++.++.|++|| +..      .+....+ .. ...+.+++|+|+++.++++ .        |+.|++||+++
T Consensus       227 -----~~~~~~~~~i~~~d-~~~------~~~~~~~-~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~  292 (433)
T 3bws_A          227 -----YCSNWISEDISVID-RKT------KLEIRKT-DK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK  292 (433)
T ss_dssp             -----EEEETTTTEEEEEE-TTT------TEEEEEC-CC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred             -----EEEecCCCcEEEEE-CCC------CcEEEEe-cC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence                 34556899999999 432      2222222 22 3458999999999988876 3        77999999984


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                       .+....        ..|...+.+++|+|++..++++++.|+.|++||+.+++..    ..+..             ...
T Consensus       293 -~~~~~~--------~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~~-------------~~~  346 (433)
T 3bws_A          293 -EKLIDT--------IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIPV-------------FDK  346 (433)
T ss_dssp             -TEEEEE--------EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEEC-------------SSS
T ss_pred             -CcEEee--------ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE----EEecC-------------CCC
Confidence             444332        2345578899999999456677789999999999987543    33332             256


Q ss_pred             eEEEEEccCCCEEEEeC----------------CCeEEEEECCCCCCceeeeeecccc
Q 015363          344 ISDIKFARNGRHILSRD----------------YMTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       344 i~~~~~spdg~~l~s~~----------------d~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                      +.+++|+|+|++|++++                ||.|++||+.+ ++.+..+..+...
T Consensus       347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~~~~~  403 (433)
T 3bws_A          347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-DTVKEFWEAGNQP  403 (433)
T ss_dssp             EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-TEEEEEEECSSSE
T ss_pred             CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC-CcEEEEecCCCCC
Confidence            89999999999888763                35999999987 7888888775443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=2.6e-25  Score=201.09  Aligned_cols=230  Identities=13%  Similarity=0.172  Sum_probs=165.0

Q ss_pred             eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCC-----cccCCCCCe
Q 015363           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP-----EKAAGNGPI  167 (408)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~v  167 (408)
                      ...+.+|.            +.|++++|+|. ++.+|++++.||.|++||+.+++...........     ......+.+
T Consensus        36 ~~~~~~h~------------~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  102 (408)
T 4a11_B           36 RDVERIHG------------GGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV  102 (408)
T ss_dssp             EEECCCCS------------SCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred             eeeeeccC------------CcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence            34567788            78999999761 4789999999999999999976543332211000     000113344


Q ss_pred             EeecCCceeeEEcc-CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-
Q 015363          168 FGSHVSAIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-  245 (408)
Q Consensus       168 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-  245 (408)
                      .       ++.|+| ++..+            ++++.++.|++|| +..      ......  ..+...+.++.++|.+ 
T Consensus       103 ~-------~~~~~~~~~~~l------------~s~~~d~~i~iwd-~~~------~~~~~~--~~~~~~~~~~~~~~~~~  154 (408)
T 4a11_B          103 E-------TVQWYPHDTGMF------------TSSSFDKTLKVWD-TNT------LQTADV--FNFEETVYSHHMSPVST  154 (408)
T ss_dssp             E-------EEEECTTCTTCE------------EEEETTSEEEEEE-TTT------TEEEEE--EECSSCEEEEEECSSCS
T ss_pred             E-------EEEEccCCCcEE------------EEEeCCCeEEEee-CCC------Ccccee--ccCCCceeeeEeecCCC
Confidence            4       789999 56666            8999999999999 433      222222  2356778899998854 


Q ss_pred             --CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccc
Q 015363          246 --ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS  322 (408)
Q Consensus       246 --~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  322 (408)
                        .+++++ .|+.|++||++... ....       +..|...|.+++|+|++..+|++++.||.|++||++++......+
T Consensus       155 ~~~~~~~~~~~~~v~~~d~~~~~-~~~~-------~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~  226 (408)
T 4a11_B          155 KHCLVAVGTRGPKVQLCDLKSGS-CSHI-------LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITL  226 (408)
T ss_dssp             SCCEEEEEESSSSEEEEESSSSC-CCEE-------ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEEC
T ss_pred             CCcEEEEEcCCCeEEEEeCCCcc-eeee-------ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccc
Confidence              489988 99999999999544 3332       567899999999999994479999999999999999875332111


Q ss_pred             cccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       323 ~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      ....+.........+.+|...|.+++|+|++++|++++ |+.|++||+.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (408)
T 4a11_B          227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN  276 (408)
T ss_dssp             CTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence            11111122223344567889999999999999999985 79999999986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.3e-26  Score=222.44  Aligned_cols=239  Identities=13%  Similarity=0.148  Sum_probs=174.9

Q ss_pred             eeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC--cEEEEeccCCCCcccCCCCCeEeec
Q 015363           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGSH  171 (408)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~  171 (408)
                      ..+.+|.            +.|++++|+|+  +.+|++|+.||+|++||+.++  +....+..+        .+.|.   
T Consensus         3 ~~l~gH~------------~~V~~l~~s~d--g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h--------~~~V~---   57 (753)
T 3jro_A            3 VIANAHN------------ELIHDAVLDYY--GKRLATCSSDKTIKIFEVEGETHKLIDTLTGH--------EGPVW---   57 (753)
T ss_dssp             -----CC------------CCEEEECCCSS--SCCEEEEETTTEEEEEEEETTEEEEEEEECCC--------SSCEE---
T ss_pred             eecccCc------------ceeEEEEECCC--CCeEEEEECCCcEEEEecCCCCCccceeccCC--------cCceE---
Confidence            3567888            78999999765  789999999999999999854  344444433        23455   


Q ss_pred             CCceeeEEccC--CCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC--CCE
Q 015363          172 VSAIPKSYMAN--GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GET  247 (408)
Q Consensus       172 ~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~  247 (408)
                          ++.|+|+  +..+            ++++.|+.|++|| +.....    ..... ...|...|++++|+|+  ++.
T Consensus        58 ----~l~~s~~~~~~~l------------~s~s~Dg~I~vwd-~~~~~~----~~~~~-~~~h~~~V~~v~~sp~~~~~~  115 (753)
T 3jro_A           58 ----RVDWAHPKFGTIL------------ASCSYDGKVLIWK-EENGRW----SQIAV-HAVHSASVNSVQWAPHEYGPL  115 (753)
T ss_dssp             ----EEEECCTTSCSEE------------EEEETTSCEEEEE-EETTEE----EEEEE-ECCCSSCEEEEEECCGGGCSE
T ss_pred             ----EEEecCCCCCCEE------------EEEeCCCeEEEEE-CCCCcc----ccccc-ccCCCCCeEEEEECCCCCCCE
Confidence                7899887  8877            9999999999999 544221    12233 3678899999999999  999


Q ss_pred             EEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcC-------------CCCceEEEEeCCCeEEEEEcC
Q 015363          248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-------------THCNMLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-------------~~~~~l~s~~~dg~i~iwd~~  313 (408)
                      +++| .||.|++||++........      .+.+|...|.+++|+|             ++ .+|++|+.||.|++||++
T Consensus       116 l~sgs~dg~I~vwdl~~~~~~~~~------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~  188 (753)
T 3jro_A          116 LLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYN  188 (753)
T ss_dssp             EEEEETTSEEEEEECCSSSCCCCE------EEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEE
T ss_pred             EEEEeCCCcEEEEEeecCCCccee------EeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEecc
Confidence            9999 9999999999855332221      2567899999999999             46 899999999999999999


Q ss_pred             CCceecccccccccccCCCCccccccccceeEEEEEccC---CCEEEEeC-CCeEEEEECCCCCC----ceeeeeecccc
Q 015363          314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRD-YMTLKLWDINMDSG----PVATFQVHEHL  385 (408)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd---g~~l~s~~-d~~v~~wd~~~~~~----~~~~~~~~~~~  385 (408)
                      ++.........+.+            |...|.+++|+|+   +.+|++|+ |+.|++||+++...    .+.....|...
T Consensus       189 ~~~~~~~~~~~~~~------------h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  256 (753)
T 3jro_A          189 SDAQTYVLESTLEG------------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV  256 (753)
T ss_dssp             TTTTEEEEEEEECC------------CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC
T ss_pred             CCcccceeeeeecC------------CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCc
Confidence            87432222234444            4688999999999   89999985 79999999987311    33344456666


Q ss_pred             cceEEecCCCeee
Q 015363          386 RPKVMHSSKNYFM  398 (408)
Q Consensus       386 ~~~~~~~~~~~~~  398 (408)
                      ...+....++..+
T Consensus       257 v~~l~~spdg~~l  269 (753)
T 3jro_A          257 LWRASWSLSGNVL  269 (753)
T ss_dssp             CCCEEECTTTCCE
T ss_pred             eEEEEEcCCCCEE
Confidence            5555544444433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.1e-26  Score=201.57  Aligned_cols=227  Identities=16%  Similarity=0.124  Sum_probs=159.7

Q ss_pred             CCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCC
Q 015363          125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV  204 (408)
Q Consensus       125 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  204 (408)
                      ++.++++|+.||+|++||+.+++....+....          +.       .+.++|+   +            ++++.|
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~----------v~-------~~~~~~~---~------------~s~s~D   94 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTITTPN----------PR-------TGGEHPA---I------------ISRGPC   94 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEEEEC----------CC-------TTCCCCS---E------------EEECST
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEecCC----------ce-------eeeeCCc---e------------EEecCC
Confidence            36799999999999999999988766554211          11       3455665   4            899999


Q ss_pred             ceeeeceeeecccc---ccccccceeeccccccceEEEEeCC--CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcc
Q 015363          205 SSLRLPVVVTSQET---NLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM  278 (408)
Q Consensus       205 ~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  278 (408)
                      +.|++|+ ......   .......+.+...|...|.+++|+|  ++++|+++ .|+.|++||+++.. .....      .
T Consensus        95 ~~i~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~------~  166 (343)
T 3lrv_A           95 NRLLLLY-PGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-QYIVH------S  166 (343)
T ss_dssp             TEEEEEE-TTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-EEEEE------C
T ss_pred             CeEEEEE-ccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-EEEEE------e
Confidence            9999998 432110   0112223333346778899999999  99999998 99999999999544 33331      2


Q ss_pred             cCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363          279 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  358 (408)
Q Consensus       279 ~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s  358 (408)
                      ..+...+++++|+|++ .+|++|+.|+.|++||+++++...   ..+..           +|...|.+++|+|+|.+|++
T Consensus       167 ~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~---~~~~~-----------~h~~~v~~l~fs~~g~~l~s  231 (343)
T 3lrv_A          167 AKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQAS---SRFPV-----------DEEAKIKEVKFADNGYWMVV  231 (343)
T ss_dssp             CCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSCC---EECCC-----------CTTSCEEEEEECTTSSEEEE
T ss_pred             cCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCCc---cEEec-----------cCCCCEEEEEEeCCCCEEEE
Confidence            3455679999999999 999999999999999999885421   23333           14588999999999999999


Q ss_pred             eCCCeEEEEECCCCCCceeeeee---cccccc--eEEecCCCeeeee----eceeeec
Q 015363          359 RDYMTLKLWDINMDSGPVATFQV---HEHLRP--KVMHSSKNYFMGL----DNIHTLY  407 (408)
Q Consensus       359 ~~d~~v~~wd~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~----d~~~~~~  407 (408)
                      ++++.|++||+++ ++.+..+..   |.....  .+....++..++.    |...++|
T Consensus       232 ~~~~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~  288 (343)
T 3lrv_A          232 ECDQTVVCFDLRK-DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIY  288 (343)
T ss_dssp             EESSBEEEEETTS-STTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EeCCeEEEEEcCC-CCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEE
Confidence            9877999999998 566655554   323322  2443334555554    6666665

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=6.9e-25  Score=200.14  Aligned_cols=238  Identities=10%  Similarity=0.082  Sum_probs=180.4

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|.+.|.+++|+|+++++++++.|+.|++||+.+++.                       ...+..|.           
T Consensus       166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~-----------------------~~~~~~~~-----------  211 (433)
T 3bws_A          166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY-----------------------KATVDLTG-----------  211 (433)
T ss_dssp             HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECSS-----------
T ss_pred             cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE-----------------------EEEEcCCC-----------
Confidence            36788999999999999999999999999999876642                       34556666           


Q ss_pred             ccceeEEEEeecCCCcEEE-EEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          112 EEKINKIRWCQSANSALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                       ..+.+++|+|+  +..++ +++.|+.|++||+.+++....+....         .+.       .++++|+++.+    
T Consensus       212 -~~~~~~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~~-------~~~~~~~g~~l----  268 (433)
T 3bws_A          212 -KWSKILLYDPI--RDLVYCSNWISEDISVIDRKTKLEIRKTDKIG---------LPR-------GLLLSKDGKEL----  268 (433)
T ss_dssp             -SSEEEEEEETT--TTEEEEEETTTTEEEEEETTTTEEEEECCCCS---------EEE-------EEEECTTSSEE----
T ss_pred             -CCeeEEEEcCC--CCEEEEEecCCCcEEEEECCCCcEEEEecCCC---------Cce-------EEEEcCCCCEE----
Confidence             66999999765  66775 45589999999999988766554421         122       68999999887    


Q ss_pred             ccccCccccCCC--------CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEE-EEe-cCCeEEEEe
Q 015363          191 GCASNDSSFPPG--------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWN  260 (408)
Q Consensus       191 ~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~d~~i~iwd  260 (408)
                              ++++        .++.|++|| +...      +....  ..|...+.+++|+|+++.+ +++ .++.|++||
T Consensus       269 --------~~~~~~~~~~~~~dg~i~~~d-~~~~------~~~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d  331 (433)
T 3bws_A          269 --------YIAQFSASNQESGGGRLGIYS-MDKE------KLIDT--IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYD  331 (433)
T ss_dssp             --------EEEEEESCTTCSCCEEEEEEE-TTTT------EEEEE--EEEEECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred             --------EEEECCCCccccCCCeEEEEE-CCCC------cEEee--ccCCCCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence                    4444        588999999 4332      12222  2445678899999999755 555 899999999


Q ss_pred             CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC---------------CCeEEEEEcCCCceeccccccc
Q 015363          261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---------------KGSIRLIDMRQSALCDTHSKLF  325 (408)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~  325 (408)
                      +++ .+....+       . +...+.+++|+|++ +++++++.               ||.|++||+.+++..    ..+
T Consensus       332 ~~~-~~~~~~~-------~-~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~----~~~  397 (433)
T 3bws_A          332 LKE-KKVQKSI-------P-VFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK----EFW  397 (433)
T ss_dssp             TTT-TEEEEEE-------E-CSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE----EEE
T ss_pred             CCC-CcEEEEe-------c-CCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcEE----EEe
Confidence            984 4444332       2 46678999999999 77777766               579999999988654    444


Q ss_pred             ccccCCCCccccccccceeEEEEEccCCCEEEEe-C-CCeEEEEECC
Q 015363          326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDIN  370 (408)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~-d~~v~~wd~~  370 (408)
                      ..+             ..+.+++|+|+|++|+++ . |+.|++|+++
T Consensus       398 ~~~-------------~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          398 EAG-------------NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             ECS-------------SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             cCC-------------CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            433             468999999999998876 4 7999999986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=3.8e-24  Score=192.48  Aligned_cols=236  Identities=11%  Similarity=0.076  Sum_probs=176.3

Q ss_pred             CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCc
Q 015363           48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA  127 (408)
Q Consensus        48 ~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~  127 (408)
                      .++++++.|+.|++||+.+++.                       +..+..|.             .+.+++|+|+  +.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~-----------------------~~~~~~~~-------------~~~~~~~s~d--g~   44 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV-----------------------TATIPVGS-------------NPMGAVISPD--GT   44 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE-----------------------EEEEECSS-------------SEEEEEECTT--SS
T ss_pred             EEEEEcCCCCEEEEEECCCCeE-----------------------EEEeecCC-------------CcceEEECCC--CC
Confidence            4688999999999999887652                       34455553             4899999754  77


Q ss_pred             EE-EEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCce
Q 015363          128 LY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS  206 (408)
Q Consensus       128 ~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  206 (408)
                      ++ ++++.|+.|++||+.+++....+..+.         .+.       .++|+|+++.+           ++++..++.
T Consensus        45 ~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---------~v~-------~~~~spdg~~l-----------~~~~~~~~~   97 (391)
T 1l0q_A           45 KVYVANAHSNDVSIIDTATNNVIATVPAGS---------SPQ-------GVAVSPDGKQV-----------YVTNMASST   97 (391)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSS---------SEE-------EEEECTTSSEE-----------EEEETTTTE
T ss_pred             EEEEECCCCCeEEEEECCCCeEEEEEECCC---------Ccc-------ceEECCCCCEE-----------EEEECCCCE
Confidence            66 666799999999999998877665532         233       78999999976           345667899


Q ss_pred             eeeceeeeccccccccccceeeccccccceEEEEeCCCCCEE-EEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCC
Q 015363          207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV  284 (408)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  284 (408)
                      |++|| +...      +....+ . +...+.+++|+|+++.+ +++ .++.|++||+.+ .+....       +.. ...
T Consensus        98 v~v~d-~~~~------~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~-------~~~-~~~  159 (391)
T 1l0q_A           98 LSVID-TTSN------TVAGTV-K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVINT-------VSV-GRS  159 (391)
T ss_dssp             EEEEE-TTTT------EEEEEE-E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEE-------EEC-CSS
T ss_pred             EEEEE-CCCC------eEEEEE-e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEE-------Eec-CCC
Confidence            99999 4332      222222 2 33568999999999977 566 799999999984 444433       222 345


Q ss_pred             eEEEEEcCCCCceE-EEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC---
Q 015363          285 ITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---  360 (408)
Q Consensus       285 v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~---  360 (408)
                      +.+++|+|++ +.+ ++++.++.|++||+++++..    ..+..+             ..+.+++|+|+|++|++++   
T Consensus       160 ~~~~~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~~-------------~~~~~~~~~~~g~~l~~~~~~~  221 (391)
T 1l0q_A          160 PKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVI----DTVKVE-------------AAPSGIAVNPEGTKAYVTNVDK  221 (391)
T ss_dssp             EEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEE----EEEECS-------------SEEEEEEECTTSSEEEEEEECS
T ss_pred             cceEEECCCC-CEEEEEeCCCCEEEEEECCCCeEE----EEEecC-------------CCccceEECCCCCEEEEEecCc
Confidence            6899999999 555 77788999999999988543    333322             5789999999999888763   


Q ss_pred             -CCeEEEEECCCCCCceeeeeecccc
Q 015363          361 -YMTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       361 -d~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                       ++.|++||+++ ++.+..+..|...
T Consensus       222 ~~~~v~~~d~~~-~~~~~~~~~~~~~  246 (391)
T 1l0q_A          222 YFNTVSMIDTGT-NKITARIPVGPDP  246 (391)
T ss_dssp             SCCEEEEEETTT-TEEEEEEECCSSE
T ss_pred             CCCcEEEEECCC-CeEEEEEecCCCc
Confidence             59999999997 6888888877654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=7.3e-25  Score=197.03  Aligned_cols=235  Identities=6%  Similarity=-0.033  Sum_probs=150.3

Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEec---cCCCCcccCCCCCeEeecCCceeeEEcc--------CCCeeeccccccc
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFD---WNVHPEKAAGNGPIFGSHVSAIPKSYMA--------NGGCGERNFGCAS  194 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~l~~~~~~~~  194 (408)
                      +.++++++.|++|++||+++++......   ...+      .+.|.       .++|+|        +++.|        
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH------~~~v~-------~v~~~p~~~~~~~~d~~~l--------  159 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGH------HNFVN-------DIDIADVYSADNRLAEQVI--------  159 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSC------SSCEE-------EEEEEEEECTTCSEEEEEE--------
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeecccCCC------CCceE-------EEEEccccccccCCCCCEE--------
Confidence            6689999999999999999887644321   1111      34455       788887        67776        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                          ++++.|++|++|| +...      .+... ...|...+.+++|+|++. +|+++ .|++|++||+++.........
T Consensus       160 ----as~s~D~tv~~Wd-~~~~------~~~~~-~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~  227 (393)
T 4gq1_A          160 ----ASVGDDCTLIIWR-LTDE------GPILA-GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ  227 (393)
T ss_dssp             ----EEEETTSEEEEEE-EETT------EEEEE-EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------
T ss_pred             ----EEEECCCeEEEEE-CCCC------ceeee-ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccc
Confidence                9999999999999 5432      22222 257788999999999874 78888 999999999986543322110


Q ss_pred             cC-----------------CCcccCCcCCeEEEEEc-CCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC--
Q 015363          273 VK-----------------PANMEDLTEVITSAEFH-PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG--  332 (408)
Q Consensus       273 ~~-----------------~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--  332 (408)
                      ..                 .....+|...+.++.|+ |++ ..+++++.|+++++||+..+...    ..+..+....  
T Consensus       228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~----~~l~~~~~~~~~  302 (393)
T 4gq1_A          228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDY----NEISDSTMKLGP  302 (393)
T ss_dssp             ---CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC----------------------
T ss_pred             cCCcccceEEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCC----ceEeeecCcccc
Confidence            00                 01134677888999987 788 89999999999999999877543    2333221100  


Q ss_pred             ----Cc-cccccccceeEEEEEcc--CCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeee
Q 015363          333 ----TR-SFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGL  400 (408)
Q Consensus       333 ----~~-~~~~~h~~~i~~~~~sp--dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (408)
                          +. .....+ .......|+|  ++.++++|+ |+.|++||+.+ ++++..+.+|......++...++..++.
T Consensus       303 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V~svafspdG~~LA~  376 (393)
T 4gq1_A          303 KNLLPNVQGISLF-PSLLGACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPIVDFCWHQDGSHLAI  376 (393)
T ss_dssp             -CCSCSEEEECSS-CCSSCCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             EEEcccccccccc-CcceeEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence                00 000111 1122234444  445667776 69999999997 6888888888887777766666665544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=3.5e-24  Score=189.91  Aligned_cols=202  Identities=14%  Similarity=0.164  Sum_probs=129.0

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..|++++|+|  +|++|++|+.|+ +++|++.+.+...........                 .+.+.+++..+      
T Consensus        20 ~~V~~v~fs~--dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~------   73 (355)
T 3vu4_A           20 NPVTDYEFNQ--DQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLS-----------------KVRMLHRTNYV------   73 (355)
T ss_dssp             CCCCEEEECT--TSSEEEEECSSE-EEEEEETTEEEEEEEECSCCC-----------------EEEECTTSSEE------
T ss_pred             CceEEEEECC--CCCEEEEEcCCE-EEEEecCCcceeeeeecCCeE-----------------EEEEcCCCCEE------
Confidence            7799999965  488998888765 789999887665543332111                 23444444332      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC---------------------------
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG---------------------------  245 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---------------------------  245 (408)
                           +++++.++.|++|| ....      ++...+  .+...|.+++++++.                           
T Consensus        74 -----~~~~~~d~~v~iWd-~~~~------~~~~~~--~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~  139 (355)
T 3vu4_A           74 -----AFVTGVKEVVHIWD-DVKK------QDVSRI--KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRF  139 (355)
T ss_dssp             -----EEECSSTTEEEEEE-TTTT------EEEEEE--ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEE
T ss_pred             -----EEEECCccEEEEEE-CCCC------cEEEEE--ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccC
Confidence                 23444455555555 2211      111111  122233334333321                           


Q ss_pred             --------CEEEE--e-cCCeEEEEeCCCCCceee------EeecC--CCcccCCcCCeEEEEEcCCCCceEEEEeCCCe
Q 015363          246 --------ETFIS--A-DDLRINLWNLEISNQSFN------IVDVK--PANMEDLTEVITSAEFHPTHCNMLAYSSSKGS  306 (408)
Q Consensus       246 --------~~l~~--~-~d~~i~iwd~~~~~~~~~------~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  306 (408)
                              .+++.  | .||.|++||++.......      ...+.  ...+.+|...|++++|+|++ .+|++|+.|++
T Consensus       140 ~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~  218 (355)
T 3vu4_A          140 GGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGT  218 (355)
T ss_dssp             EEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCS
T ss_pred             CceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCC
Confidence                    34443  5 678888888874331000      00000  02367899999999999999 99999999998


Q ss_pred             -EEEEEcCCCceecccccccc-c-ccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          307 -IRLIDMRQSALCDTHSKLFE-E-QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       307 -i~iwd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                       |++||+++++.+    ..+. + |            ...|.+++|+|+|++|++++ |++|++||++.
T Consensus       219 ~v~iwd~~~~~~~----~~~~~g~h------------~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          219 IIRVFKTEDGVLV----REFRRGLD------------RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             EEEEEETTTCCEE----EEEECTTC------------CSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             EEEEEECCCCcEE----EEEEcCCC------------CCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence             999999998654    4554 3 4            57899999999999999985 69999999976

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=2.3e-22  Score=181.88  Aligned_cols=252  Identities=10%  Similarity=0.037  Sum_probs=179.9

Q ss_pred             ceeeccceEEEEECC--------------CCCeEEEeecC------CeEEEEEeCCCCCCCCcccccccccccccCCCcc
Q 015363           31 EVQEVDIISAIEFDK--------------SGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~--------------~~~~l~sg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~   90 (408)
                      ...|...+..+++++              .+..++.++.+      +.|++||+++..                      
T Consensus       113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~----------------------  170 (415)
T 2hqs_A          113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN----------------------  170 (415)
T ss_dssp             EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS----------------------
T ss_pred             EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC----------------------
Confidence            345667777776664              25667776654      799999987543                      


Q ss_pred             ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCC---eEEEEEcCCCcEEEEeccCCCCcccCCCCCe
Q 015363           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI  167 (408)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v  167 (408)
                        ...+.+|.            ..|.+++|+|+  |++|++++.|+   .|++||+.+++........         +.+
T Consensus       171 --~~~l~~~~------------~~v~~~~~Spd--g~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~---------~~~  225 (415)
T 2hqs_A          171 --QFVVHRSP------------QPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAVRQVASFP---------RHN  225 (415)
T ss_dssp             --CEEEEEES------------SCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCCEEEEECCS---------SCE
T ss_pred             --CEEEeCCC------------CcceeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCcEEEeecCC---------Ccc
Confidence              23566666            67999999755  88999999875   9999999998876543321         123


Q ss_pred             EeecCCceeeEEccCCCeeecccccccCccccCCCCCc--eeeeceeeeccccccccccceeeccccccceEEEEeCCCC
Q 015363          168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG  245 (408)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  245 (408)
                      .       .++|+|+|+.+           +++++.++  .|++|| +...      .. .. +..|...+.+++|+|+|
T Consensus       226 ~-------~~~~spdg~~l-----------a~~~~~~g~~~i~~~d-~~~~------~~-~~-l~~~~~~~~~~~~spdg  278 (415)
T 2hqs_A          226 G-------APAFSPDGSKL-----------AFALSKTGSLNLYVMD-LASG------QI-RQ-VTDGRSNNTEPTWFPDS  278 (415)
T ss_dssp             E-------EEEECTTSSEE-----------EEEECTTSSCEEEEEE-TTTC------CE-EE-CCCCSSCEEEEEECTTS
T ss_pred             c-------CEEEcCCCCEE-----------EEEEecCCCceEEEEE-CCCC------CE-Ee-CcCCCCcccceEECCCC
Confidence            3       68999999977           23555544  488888 4321      11 22 35677889999999999


Q ss_pred             CEEEEe-c-CC--eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCCcee
Q 015363          246 ETFISA-D-DL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALC  318 (408)
Q Consensus       246 ~~l~~~-~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~  318 (408)
                      +.|+.+ . ++  .|.+||+.+.. ...        +..+...+.+++|+|+| ++|++++.+   ..|++||+.+++. 
T Consensus       279 ~~l~~~s~~~g~~~i~~~d~~~~~-~~~--------l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~-  347 (415)
T 2hqs_A          279 QNLAFTSDQAGRPQVYKVNINGGA-PQR--------ITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-  347 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSSC-CEE--------CCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCE-
T ss_pred             CEEEEEECCCCCcEEEEEECCCCC-EEE--------EecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCE-
Confidence            988876 4 45  67777887433 222        34456678899999999 888877764   5899999998754 


Q ss_pred             cccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CC---eEEEEECCCCCCceeeeeeccccc
Q 015363          319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM---TLKLWDINMDSGPVATFQVHEHLR  386 (408)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~---~v~~wd~~~~~~~~~~~~~~~~~~  386 (408)
                          ..+..+             ..+.+++|+|||++|++++ ++   .|++||+.  +..++.+..|.+..
T Consensus       348 ----~~l~~~-------------~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~--g~~~~~l~~~~~~v  400 (415)
T 2hqs_A          348 ----QVLSST-------------FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDGQV  400 (415)
T ss_dssp             ----EECCCS-------------SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT--SCCEEECCCSSSEE
T ss_pred             ----EEecCC-------------CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC--CCcEEEeeCCCCCC
Confidence                223333             2588999999999998874 43   79999986  57788888887653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.91  E-value=4.1e-22  Score=169.39  Aligned_cols=176  Identities=10%  Similarity=0.052  Sum_probs=113.3

Q ss_pred             CCCceeeeceeeeccccccccccceeeccccccceEEEEeCC---CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCc
Q 015363          202 GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN  277 (408)
Q Consensus       202 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  277 (408)
                      +.++.|++|+ +...     ++.... ...|...++.++|+|   ++..|+++ .|++|+|||++++ +++..       
T Consensus       154 g~d~~V~~~~-~s~d-----G~~~~s-~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~t-------  218 (356)
T 2w18_A          154 LSDQQVEVMT-FAED-----GGGKEN-QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKK-------  218 (356)
T ss_dssp             STTCEEEEEE-ECTT-----SCEEEE-EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEE-------
T ss_pred             CCCCcEEEEE-ECCC-----Cceeee-eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEE-------
Confidence            3577777777 4221     111122 257778888999999   77999998 9999999999954 45444       


Q ss_pred             ccCC---cCCeEEEEEcCCCCceE------------EEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccc
Q 015363          278 MEDL---TEVITSAEFHPTHCNML------------AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA  342 (408)
Q Consensus       278 ~~~~---~~~v~~~~~~p~~~~~l------------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  342 (408)
                      +.+|   ...+.+++|+|+| .++            ++|+.|++|++||..+++.+    ..+.-.       +..+|..
T Consensus       219 L~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l----~v~~~~-------~p~Gh~~  286 (356)
T 2w18_A          219 MHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV----GVMLYC-------LPPGQAG  286 (356)
T ss_dssp             EECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEE----EEEEEC-------CCTTCCC
T ss_pred             EcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE----EEEEee-------ccCCCcc
Confidence            2332   3467888999999 765            66788999999999988654    222100       0012334


Q ss_pred             eeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc-cceEEecCCCeeee---eeceeeec
Q 015363          343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL-RPKVMHSSKNYFMG---LDNIHTLY  407 (408)
Q Consensus       343 ~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~d~~~~~~  407 (408)
                      .+.+..+  ++.++++++ |++|+|||+.+ +++++++.+|... ...+...-++..++   .|+-.+||
T Consensus       287 ~~lsg~~--sg~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW  353 (356)
T 2w18_A          287 RFLEGDV--KDHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY  353 (356)
T ss_dssp             CEEEEEE--ETTEEEEEETTSCEEEEETTT-CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             eeEcccc--CCCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence            4444444  488999985 79999999998 8999999999775 33343333344442   36555555

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=5.8e-21  Score=168.33  Aligned_cols=257  Identities=11%  Similarity=0.131  Sum_probs=164.8

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecC-CeEEEEEeC--CCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRG-GRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      ...|...+.+++|+|+|++|++++.+ +.|.+|+++  ++..                     +.+..+..+        
T Consensus        33 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~~~~~~--------   83 (343)
T 1ri6_A           33 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---------------------TFAAESALP--------   83 (343)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---------------------EEEEEEECS--------
T ss_pred             eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce---------------------eeccccccC--------
Confidence            35677889999999999999888876 999999987  3321                     122222222        


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCCC---cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  183 (408)
                           ..+..++|+|+  |+++++++ .++.|.+||+..+   +.........         .+       ..++|+|+|
T Consensus        84 -----~~~~~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---------~~-------~~~~~s~dg  140 (343)
T 1ri6_A           84 -----GSLTHISTDHQ--GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD---------GC-------HSANISPDN  140 (343)
T ss_dssp             -----SCCSEEEECTT--SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT---------TB-------CCCEECTTS
T ss_pred             -----CCCcEEEEcCC--CCEEEEEecCCCeEEEEECCCCccccccccccCCC---------Cc-------eEEEECCCC
Confidence                 34889999654  77776665 5889999999533   3333322211         11       268999999


Q ss_pred             CeeecccccccCccccCCC-CCceeeeceeeec-cccccccccceeeccccccceEEEEeCCCCCEEEE-e-cCCeEEEE
Q 015363          184 GCGERNFGCASNDSSFPPG-GVSSLRLPVVVTS-QETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLW  259 (408)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~iw  259 (408)
                      +.+            ++++ .++.|.+|+ +.. ........  ..........+..++|+|+++++++ + .++.|.+|
T Consensus       141 ~~l------------~~~~~~~~~v~~~d-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~  205 (343)
T 1ri6_A          141 RTL------------WVPALKQDRICLFT-VSDDGHLVAQDP--AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVW  205 (343)
T ss_dssp             SEE------------EEEEGGGTEEEEEE-ECTTSCEEEEEE--EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CEE------------EEecCCCCEEEEEE-ecCCCceeeecc--cccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence            877            5544 789999999 543 21111000  0111223356888999999997654 4 79999999


Q ss_pred             eCCCC-Cce--eeEeecCCCcccCCcCCeEEEEEcCCCCceEE-EEeCCCeEEEEEcCC--CceecccccccccccCCCC
Q 015363          260 NLEIS-NQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGT  333 (408)
Q Consensus       260 d~~~~-~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~  333 (408)
                      |++.. +..  ...+...+... .....+..++|+|++ ++|+ ++..++.|.+||+..  +..  +.+..+..+     
T Consensus       206 ~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg-~~l~v~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~-----  276 (343)
T 1ri6_A          206 ELKDPHGNIECVQTLDMMPENF-SDTRWAADIHITPDG-RHLYACDRTASLITVFSVSEDGSVL--SKEGFQPTE-----  276 (343)
T ss_dssp             ESSCTTSCCEEEEEEECSCTTC-CSCCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCCE--EEEEEEECS-----
T ss_pred             EecCCCCcEEEEeeccccCccc-cccCCccceEECCCC-CEEEEEecCCCEEEEEEEcCCCCce--EEeeeecCC-----
Confidence            99632 221  12111111011 113457789999999 5555 555799999999983  221  111222222     


Q ss_pred             ccccccccceeEEEEEccCCCEEEEeC--CCeEEEEECCC
Q 015363          334 RSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINM  371 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~  371 (408)
                              ..+..++|+|+|++|++++  ++.|.+|+++.
T Consensus       277 --------~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          277 --------TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             --------SSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             --------CccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence                    2378899999999888774  59999996653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.89  E-value=3.2e-21  Score=174.35  Aligned_cols=221  Identities=9%  Similarity=0.055  Sum_probs=157.9

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCC---eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGG---RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  106 (408)
                      ....|.+.|.+++|+|+|++||+++.++   .|++||+.+++.                        ..+..|.      
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~------------------------~~l~~~~------  222 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------------------------RQVASFP------  222 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------------------------EEEECCS------
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE------------------------EEeecCC------
Confidence            3456889999999999999999999885   999999987653                        2345555      


Q ss_pred             cccccccceeEEEEeecCCCcEEE-EEeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363          107 KSLEIEEKINKIRWCQSANSALYL-LSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (408)
Q Consensus       107 ~~~~~~~~v~~v~~~p~~~~~~l~-~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  183 (408)
                            ..+.+++|+|+  |++|+ +++.|+  .|++||+.+++.......         .+.+.       .+.|+|+|
T Consensus       223 ------~~~~~~~~spd--g~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~---------~~~~~-------~~~~spdg  278 (415)
T 2hqs_A          223 ------RHNGAPAFSPD--GSKLAFALSKTGSLNLYVMDLASGQIRQVTDG---------RSNNT-------EPTWFPDS  278 (415)
T ss_dssp             ------SCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCCEEECCCC---------SSCEE-------EEEECTTS
T ss_pred             ------CcccCEEEcCC--CCEEEEEEecCCCceEEEEECCCCCEEeCcCC---------CCccc-------ceEECCCC
Confidence                  56999999755  88787 556555  499999998876433221         11233       68999999


Q ss_pred             CeeecccccccCccccCCC-CCc--eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c---CCeE
Q 015363          184 GCGERNFGCASNDSSFPPG-GVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---DLRI  256 (408)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~-~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~---d~~i  256 (408)
                      +.+            +.++ .++  .|.+|| +...+       ... +..+...+.+++|+|+|++|+.+ .   +..|
T Consensus       279 ~~l------------~~~s~~~g~~~i~~~d-~~~~~-------~~~-l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i  337 (415)
T 2hqs_A          279 QNL------------AFTSDQAGRPQVYKVN-INGGA-------PQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI  337 (415)
T ss_dssp             SEE------------EEEECTTSSCEEEEEE-TTSSC-------CEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred             CEE------------EEEECCCCCcEEEEEE-CCCCC-------EEE-EecCCCcccCeEECCCCCEEEEEECcCCceEE
Confidence            987            4433 345  455556 32211       111 24455678899999999999887 4   3589


Q ss_pred             EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEEEEcCCCceecccccccccccCCCC
Q 015363          257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGT  333 (408)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~  333 (408)
                      .+||+.+. ....        +..+. .+.+++|+|+| ++|++++.++   .|++||+..+..     ..+..+     
T Consensus       338 ~~~d~~~~-~~~~--------l~~~~-~~~~~~~spdg-~~l~~~s~~~~~~~l~~~d~~g~~~-----~~l~~~-----  396 (415)
T 2hqs_A          338 AKQDLATG-GVQV--------LSSTF-LDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTDGRFK-----ARLPAT-----  396 (415)
T ss_dssp             EEEETTTC-CEEE--------CCCSS-SCEEEEECTTS-SEEEEEEEETTEEEEEEEETTSCCE-----EECCCS-----
T ss_pred             EEEECCCC-CEEE--------ecCCC-CcCCeEEcCCC-CEEEEEEcCCCccEEEEEECCCCcE-----EEeeCC-----
Confidence            99999844 3322        33343 78999999999 8888887776   899999975532     445555     


Q ss_pred             ccccccccceeEEEEEccCC
Q 015363          334 RSFFTEIIASISDIKFARNG  353 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg  353 (408)
                             .+.|.+++|+|.-
T Consensus       397 -------~~~v~~~~~~~~~  409 (415)
T 2hqs_A          397 -------DGQVKFPAWSPYL  409 (415)
T ss_dssp             -------SSEEEEEEECCCC
T ss_pred             -------CCCCcCCcccccc
Confidence                   4789999999953

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=1.6e-20  Score=174.98  Aligned_cols=259  Identities=10%  Similarity=0.037  Sum_probs=179.5

Q ss_pred             eEEEEECCCCCeEEEeecCCeEEEEEe--CCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           38 ISAIEFDKSGDHLATGDRGGRVVLFER--TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      +.+++|+|||++|++++.|++|++||+  .+++                       .+..+..+             ..+
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----------------------~~~~i~~g-------------~~p  224 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----------------------KVAEIKIG-------------IEA  224 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----------------------EEEEEECC-------------SEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----------------------EEEEEecC-------------CCc
Confidence            889999999999999999999999998  4443                       23334422             447


Q ss_pred             eEEEEee--cCCCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCC---cccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          116 NKIRWCQ--SANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHP---EKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       116 ~~v~~~p--~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..++|+|  ..+|+++++++ .+++|.+||..+.+++..+......   ..+.+...+.       .+.++|++..+   
T Consensus       225 ~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~-------~i~~s~~~~~~---  294 (543)
T 1nir_A          225 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA-------AIIASHEHPEF---  294 (543)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE-------EEEECSSSSEE---
T ss_pred             ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceE-------EEEECCCCCEE---
Confidence            8999975  00488998887 5899999999999888776653211   0011111233       67888887765   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCce
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~  267 (408)
                              +++...++.|.+|| ....+...    ...  ..+...+..++|+|++++|+++  .+++|.+||..+ +++
T Consensus       295 --------~vs~~~~g~i~vvd-~~~~~~l~----~~~--i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l  358 (543)
T 1nir_A          295 --------IVNVKETGKVLLVN-YKDIDNLT----VTS--IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRL  358 (543)
T ss_dssp             --------EEEETTTTEEEEEE-CTTSSSCE----EEE--EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEE
T ss_pred             --------EEEECCCCeEEEEE-ecCCCcce----eEE--eccCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeE
Confidence                    46778899999999 44322111    011  1344567889999999987655  689999999994 455


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe-CCCeEEEEEcCC-------CceecccccccccccCCCCcccccc
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQ-------SALCDTHSKLFEEQEAPGTRSFFTE  339 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  339 (408)
                      ...++..   ...|......+ ++|++..+++++. .|++|.+||+.+       .+.+    +++.++           
T Consensus       359 ~~~i~~g---~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v----~~l~~~-----------  419 (543)
T 1nir_A          359 SALVDVG---KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV----AELQGQ-----------  419 (543)
T ss_dssp             EEEEECS---SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE----EEEECS-----------
T ss_pred             EEeeccC---CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEE----EEEEcC-----------
Confidence            5544321   12354433333 5787437778776 589999999988       4332    555555           


Q ss_pred             ccceeEEEEEccCCCEEEEeC--------CCeEEEEECCCCCCce-eee
Q 015363          340 IIASISDIKFARNGRHILSRD--------YMTLKLWDINMDSGPV-ATF  379 (408)
Q Consensus       340 h~~~i~~~~~spdg~~l~s~~--------d~~v~~wd~~~~~~~~-~~~  379 (408)
                       ...+..++|+|||++|++++        +++|.+||+.+ ++.. +.+
T Consensus       420 -g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~  466 (543)
T 1nir_A          420 -GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVL  466 (543)
T ss_dssp             -CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEE
T ss_pred             -CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC-CCCCeEEe
Confidence             35678899999999999985        47999999998 4555 443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=2.9e-20  Score=164.37  Aligned_cols=287  Identities=7%  Similarity=0.031  Sum_probs=171.4

Q ss_pred             cccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeec---CCeEEEEEeCCCCCCCCcccccccccccccCCCcc
Q 015363           14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (408)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~   90 (408)
                      -..|.+...-++........+...+..++|+|+|+ |++++.   ++.|.+|++.++..                     
T Consensus        18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~---------------------   75 (347)
T 3hfq_A           18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA---------------------   75 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE---------------------
T ss_pred             EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE---------------------
Confidence            34566654222222223345667788999999999 555544   68999999976542                     


Q ss_pred             ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEe-CCCeEEEEEcC-CCcEEEEeccCCCCcccCCCCCeE
Q 015363           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIF  168 (408)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~  168 (408)
                      +.+..+..+.            ..+..++|+|+  |++|++++ .++.|.+|++. ++................+..   
T Consensus        76 ~~~~~~~~~~------------~~p~~~a~spd--g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~---  138 (347)
T 3hfq_A           76 HKLNTVVAPG------------TPPAYVAVDEA--RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQ---  138 (347)
T ss_dssp             EEEEEEEEES------------CCCSEEEEETT--TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTC---
T ss_pred             EEeeeeecCC------------CCCEEEEECCC--CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccc---
Confidence            1223333343            55889999755  88888887 78999999996 343332222111000000000   


Q ss_pred             eecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEE
Q 015363          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF  248 (408)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  248 (408)
                       .......++++|+|+.+            ++...++.|.+|+ +..... .  .....+.......+..++|+|+|+++
T Consensus       139 -~~~~~~~~~~spdg~l~------------v~~~~~~~v~~~~-~~~~g~-~--~~~~~~~~~~g~~p~~~~~spdg~~l  201 (347)
T 3hfq_A          139 -DGSHIHYTDLTPDNRLA------------VIDLGSDKVYVYN-VSDAGQ-L--SEQSVLTMEAGFGPRHLVFSPDGQYA  201 (347)
T ss_dssp             -SSCCEEEEEECTTSCEE------------EEETTTTEEEEEE-ECTTSC-E--EEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred             -cCCCceEEEECCCCcEE------------EEeCCCCEEEEEE-ECCCCc-E--EEeeeEEcCCCCCCceEEECCCCCEE
Confidence             00112268999999943            6667788999999 542111 0  01111111222357789999999966


Q ss_pred             EE-e-cCCeEEEEeCCCC-Ccee--eEeecCCCcccCCcCCeEEEEEcCCCCceE-EEEeCCCeEEEEEcCCCceecccc
Q 015363          249 IS-A-DDLRINLWNLEIS-NQSF--NIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHS  322 (408)
Q Consensus       249 ~~-~-~d~~i~iwd~~~~-~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~  322 (408)
                      ++ + .++.|.+|+++.. +...  ..+...+.... ....+..++|+|+| ++| ++...++.|.+|++...... ..+
T Consensus       202 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~spdG-~~l~v~~~~~~~v~v~~~~~~g~~-~~~  278 (347)
T 3hfq_A          202 FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT-AHNGAAAIRLSHDG-HFLYVSNRGYNTLAVFAVTADGHL-TLI  278 (347)
T ss_dssp             EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC-SCCEEEEEEECTTS-CEEEEEEETTTEEEEEEECGGGCE-EEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC-CCCcceeEEECCCC-CEEEEEeCCCCEEEEEEECCCCcE-EEe
Confidence            65 4 7899999998842 2221  11111111111 12457899999999 655 66667899999999733111 111


Q ss_pred             cccccccCCCCccccccccceeEEEEEccCCCEEEEe-CC-CeEEEEECCC
Q 015363          323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY-MTLKLWDINM  371 (408)
Q Consensus       323 ~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d-~~v~~wd~~~  371 (408)
                      ..+..+            ...+..++|+|||++|+++ .+ +.|.+|+++.
T Consensus       279 ~~~~~~------------~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          279 QQISTE------------GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             EEEECS------------SSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEecC------------CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            223222            2457899999999988877 34 8999996653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=1.8e-21  Score=167.67  Aligned_cols=237  Identities=10%  Similarity=0.070  Sum_probs=164.2

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCC-CCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD-TRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ....|...|.+++|+|+|++|++++ ++.|.+||+.+ ++.                       ......+..       
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-----------------------~~~~~~~~~-------   84 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-----------------------EKVDTGFAT-------   84 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-----------------------EECCCTTCC-------
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-----------------------eEecccccc-------
Confidence            3456889999999999999999986 78999999987 542                       122233321       


Q ss_pred             cccccceeEEEEeecCCCcEEEEEe--CCCeEEEEEc--CCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC
Q 015363          109 LEIEEKINKIRWCQSANSALYLLST--NDKTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~--~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  184 (408)
                          ..|.+++|+|+  +++|++++  .++..++|.+  .+++.......          ..+.       .+.|+|+++
T Consensus        85 ----~~~~~~~~spd--g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~-------~~~~spdg~  141 (297)
T 2ojh_A           85 ----ICNNDHGISPD--GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN----------LPSY-------WHGWSPDGK  141 (297)
T ss_dssp             ----CBCSCCEECTT--SSEEEEEECTTTSSCEEEEEETTCCCCEECCSS----------SSEE-------EEEECTTSS
T ss_pred             ----ccccceEECCC--CCEEEEEEeCCCCcceEEEEECCCCceEEeecC----------CCcc-------ceEECCCCC
Confidence                45889999754  88999988  4445555554  45443222111          1122       578999999


Q ss_pred             eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCC
Q 015363          185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLE  262 (408)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~  262 (408)
                      .+           ++++..++.+++|+ +.....     .... +..+...+.+++|+|+++.|+.+  .++.+++|++.
T Consensus       142 ~l-----------~~~~~~~~~~~l~~-~~~~~~-----~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          142 SF-----------TYCGIRDQVFDIYS-MDIDSG-----VETR-LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             EE-----------EEEEEETTEEEEEE-EETTTC-----CEEE-CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             EE-----------EEEECCCCceEEEE-EECCCC-----cceE-cccCCCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence            87           34677888899998 533211     1122 25566789999999999988765  58999999987


Q ss_pred             CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC-----------CeEEEEEcCCCceecccccccccccCC
Q 015363          263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----------GSIRLIDMRQSALCDTHSKLFEEQEAP  331 (408)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~  331 (408)
                      ........       +..|...+..++|+|++ ++|++++.+           +.|.+||+.+++..  .+..+.++   
T Consensus       204 ~~~~~~~~-------~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~~~~~---  270 (297)
T 2ojh_A          204 VDGSSVER-------ITDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE--TLFDLFGG---  270 (297)
T ss_dssp             TTSSCEEE-------CCCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE--EEEEEEES---
T ss_pred             CCCCCcEE-------EecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCce--eeeccCCC---
Confidence            33333332       45567778999999999 888777765           56999999887542  11222233   


Q ss_pred             CCccccccccceeEEEEEccCCCEEEEeC
Q 015363          332 GTRSFFTEIIASISDIKFARNGRHILSRD  360 (408)
Q Consensus       332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~~  360 (408)
                               ...+..++|+|+|++|++++
T Consensus       271 ---------~~~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          271 ---------QGTMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             ---------TTTSCSCCBCTTSSEEEEEE
T ss_pred             ---------CcccccceECCCCCEEEEEE
Confidence                     35688899999999998773

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=1.7e-20  Score=161.61  Aligned_cols=249  Identities=10%  Similarity=0.075  Sum_probs=164.7

Q ss_pred             EeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEE
Q 015363           52 TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLL  131 (408)
Q Consensus        52 sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~  131 (408)
                      .++.++.|++||+.+++.                        ..+..|.            ..|.+++|+|+  |++|++
T Consensus        17 ~~~~~~~i~~~d~~~~~~------------------------~~~~~~~------------~~v~~~~~spd--g~~l~~   58 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKM------------------------RVVWQTP------------ELFEAPNWSPD--GKYLLL   58 (297)
T ss_dssp             -CCCCEEEEEEETTTTEE------------------------EEEEEES------------SCCEEEEECTT--SSEEEE
T ss_pred             CCCcceeEEEEeCCCCce------------------------eeeccCC------------cceEeeEECCC--CCEEEE
Confidence            456789999999887653                        2344455            66999999755  888888


Q ss_pred             EeCCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCC--CCceee
Q 015363          132 STNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG--GVSSLR  208 (408)
Q Consensus       132 ~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~i~  208 (408)
                      ++ ++.|++||+.+ ++.......+..       ..+.       .+.|+|+++.+            +.+.  .++...
T Consensus        59 ~~-~~~i~~~d~~~~~~~~~~~~~~~~-------~~~~-------~~~~spdg~~l------------~~~~~~~~~~~~  111 (297)
T 2ojh_A           59 NS-EGLLYRLSLAGDPSPEKVDTGFAT-------ICNN-------DHGISPDGALY------------AISDKVEFGKSA  111 (297)
T ss_dssp             EE-TTEEEEEESSSCCSCEECCCTTCC-------CBCS-------CCEECTTSSEE------------EEEECTTTSSCE
T ss_pred             Ec-CCeEEEEeCCCCCCceEecccccc-------cccc-------ceEECCCCCEE------------EEEEeCCCCcce
Confidence            76 88999999998 776655433211       1122       58999999987            5544  445666


Q ss_pred             eceeeeccccccccccceeeccccccceEEEEeCCCCCEEE-Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE
Q 015363          209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT  286 (408)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  286 (408)
                      +|. +.....     ....+ ..+ ..+..++|+|+++.|+ ++ .++.+++|+++........       +..+...+.
T Consensus       112 l~~-~~~~~~-----~~~~~-~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~  176 (297)
T 2ojh_A          112 IYL-LPSTGG-----TPRLM-TKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR-------LTHGEGRND  176 (297)
T ss_dssp             EEE-EETTCC-----CCEEC-CSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE-------CCCSSSCEE
T ss_pred             EEE-EECCCC-----ceEEe-ecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE-------cccCCCccc
Confidence            666 322111     11121 222 3488899999999887 55 7899999997533332222       455677899


Q ss_pred             EEEEcCCCCceEEEEe-CCCeEEEEEcCC-CceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-C--
Q 015363          287 SAEFHPTHCNMLAYSS-SKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--  361 (408)
Q Consensus       287 ~~~~~p~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d--  361 (408)
                      +++|+|++ +.|++++ .++.+++|++.. +...    ..+..+            ...+..++|+|+|++|++++ +  
T Consensus       177 ~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~----~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~~~  239 (297)
T 2ojh_A          177 GPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSV----ERITDS------------AYGDWFPHPSPSGDKVVFVSYDAD  239 (297)
T ss_dssp             EEEECTTS-SEEEEEECTTSSCEEEEEETTSSCE----EECCCC------------SEEEEEEEECTTSSEEEEEEEETT
T ss_pred             cceECCCC-CEEEEEecCCCCccEEEECCCCCCc----EEEecC------------CcccCCeEECCCCCEEEEEEcCCC
Confidence            99999999 7666555 589999998863 2221    333333            36789999999999998763 3  


Q ss_pred             ---------CeEEEEECCCCCCce--eeeeecccccceEEecCCCeee
Q 015363          362 ---------MTLKLWDINMDSGPV--ATFQVHEHLRPKVMHSSKNYFM  398 (408)
Q Consensus       362 ---------~~v~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  398 (408)
                               +.|++||+.+ ++..  ..+.+|......+...-++..+
T Consensus       240 ~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l  286 (297)
T 2ojh_A          240 VFDHPRDLDVRVQLMDMDG-GNVETLFDLFGGQGTMNSPNWSPDGDEF  286 (297)
T ss_dssp             CCSCCSSEEEEEEEEETTS-CSCEEEEEEEESTTTSCSCCBCTTSSEE
T ss_pred             CCcccccCceEEEEEecCC-CCceeeeccCCCCcccccceECCCCCEE
Confidence                     4699999986 4553  3344666554444433344433

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.88  E-value=2.3e-20  Score=173.95  Aligned_cols=254  Identities=11%  Similarity=0.113  Sum_probs=175.2

Q ss_pred             EECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEe
Q 015363           42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC  121 (408)
Q Consensus        42 ~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~  121 (408)
                      +|+|++.++++++.|++|.+||..+++.                       +..+..+.            . +..++|+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-----------------------~~~i~~g~------------~-~~~v~~s  187 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-----------------------VKVIDTGY------------A-VHISRMS  187 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECST------------T-EEEEEEC
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceE-----------------------EEEEecCc------------c-cceEEEC
Confidence            3889999999999999999999887653                       34454222            2 7889996


Q ss_pred             ecCCCcEEEEEeCCCeEEEEEc--CCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc----CCCeeecccccccC
Q 015363          122 QSANSALYLLSTNDKTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA----NGGCGERNFGCASN  195 (408)
Q Consensus       122 p~~~~~~l~~~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~l~~~~~~~~~  195 (408)
                      |  +|+++++++.|++|++||+  .+++....+.....         .       ..++++|    +|+.+         
T Consensus       188 p--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~---------p-------~~va~sp~~~~dg~~l---------  240 (543)
T 1nir_A          188 A--SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE---------A-------RSVESSKFKGYEDRYT---------  240 (543)
T ss_dssp             T--TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE---------E-------EEEEECCSTTCTTTEE---------
T ss_pred             C--CCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCC---------c-------ceEEeCCCcCCCCCEE---------
Confidence            5  4889999999999999999  77776665543211         1       2689999    99987         


Q ss_pred             ccccCCC-CCceeeeceeeeccccccccccceeecc-c--------c-ccceEEEEeCCCCCEEEEe--cCCeEEEEeCC
Q 015363          196 DSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYAH-A--------H-DYHINSISNNSDGETFISA--DDLRINLWNLE  262 (408)
Q Consensus       196 ~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~--------~-~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~  262 (408)
                         ++++ .++.|.+|| ...      .++.+.+.. +        | ...+..+.++|++..++.+  .++.|.+||+.
T Consensus       241 ---~v~~~~~~~v~v~D-~~t------~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~  310 (543)
T 1nir_A          241 ---IAGAYWPPQFAIMD-GET------LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK  310 (543)
T ss_dssp             ---EEEEEESSEEEEEE-TTT------CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred             ---EEEEccCCeEEEEe-ccc------cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence               6665 589999999 432      222222210 0        2 2378899999988766654  79999999998


Q ss_pred             CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEE-EEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363          263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                      +.+.. ....     + .+...+..+.|+|++ ++|+ ++..+++|.+||+.++++.    ..+....        ..|.
T Consensus       311 ~~~~l-~~~~-----i-~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~----~~i~~g~--------~ph~  370 (543)
T 1nir_A          311 DIDNL-TVTS-----I-GAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLS----ALVDVGK--------TPHP  370 (543)
T ss_dssp             TSSSC-EEEE-----E-ECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEECSS--------SBCC
T ss_pred             CCCcc-eeEE-----e-ccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEE----EeeccCC--------CCCC
Confidence            54432 2111     1 234567789999999 6554 5556899999999998654    3333211        1122


Q ss_pred             ceeEEEEEccC-CCEEEEe--CCCeEEEEECCCC------CCceeeeeecccccceE
Q 015363          342 ASISDIKFARN-GRHILSR--DYMTLKLWDINMD------SGPVATFQVHEHLRPKV  389 (408)
Q Consensus       342 ~~i~~~~~spd-g~~l~s~--~d~~v~~wd~~~~------~~~~~~~~~~~~~~~~~  389 (408)
                      +....+ ++|+ |.+++++  +|++|.+||+++.      .++++++.+|......+
T Consensus       371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v  426 (543)
T 1nir_A          371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI  426 (543)
T ss_dssp             TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE
T ss_pred             CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEE
Confidence            223233 5777 6677776  3699999999862      58889999886553333

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1.5e-21  Score=177.06  Aligned_cols=230  Identities=9%  Similarity=0.004  Sum_probs=151.3

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      +...++.+++++++.++++|+.++ ++||+.......   .....          .........       ....+.+..
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~----------~~~~~~~~~-------~~~~~~~~~   93 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGD----------DPNKIVDKV-------QGLLVPMKF   93 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTC----------CTTCEEECC-------CCEEECCSS
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---ccccc----------CcccccccC-------ccccccCCC
Confidence            345689999999999999999887 899886432110   00000          000000000       001112226


Q ss_pred             ceeEEEEeecCCCcEEE----EEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          114 KINKIRWCQSANSALYL----LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~----~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      .|.+++|+|+  |.+|+    +++.|++|++||+.+...     .....                        .+.    
T Consensus        94 ~v~~l~~spd--g~~lav~~~sgs~d~~v~iwd~~~~~~-----~~~~~------------------------~~~----  138 (434)
T 2oit_A           94 PIHHLALSCD--NLTLSACMMSSEYGSIIAFFDVRTFSN-----EAKQQ------------------------KRP----  138 (434)
T ss_dssp             CEEEEEECTT--SCEEEEEEEETTTEEEEEEEEHHHHHC-----TTCSS------------------------CCC----
T ss_pred             cccEEEEcCC--CCEEEEEEeccCCCceEEEEEcccccc-----CCcCC------------------------cce----
Confidence            7999999755  88998    788999999999875410     00000                        000    


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCCCce
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                       +               ...+. ..+|...|++++|+|+ +.+|+++ .|++|++||+++....
T Consensus       139 -----------------~---------------~~~~~-~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~  185 (434)
T 2oit_A          139 -----------------F---------------AYHKL-LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV  185 (434)
T ss_dssp             -----------------S---------------EEEEC-CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred             -----------------e---------------eeeec-cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence                             0               00011 3578889999999998 7899998 9999999999955322


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      ..        ..+|...|++++|+|+| .+|++|+.||.|++||++ +...    ..+..+..     .-..|...|.++
T Consensus       186 ~~--------~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~~-----~~~~~~~~v~~v  246 (434)
T 2oit_A          186 CA--------TLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEK----KVIPCPPF-----YESDHPVRVLDV  246 (434)
T ss_dssp             EE--------EECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEE----EEECCCTT-----CCTTSCEEEEEE
T ss_pred             ee--------ccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cccc----ccccCCcc-----cCCCCceeEEEE
Confidence            22        34578899999999999 999999999999999998 4322    23333210     011234589999


Q ss_pred             EEccCCCEEEEe--CCC------eEEEEECCC
Q 015363          348 KFARNGRHILSR--DYM------TLKLWDINM  371 (408)
Q Consensus       348 ~~spdg~~l~s~--~d~------~v~~wd~~~  371 (408)
                      +|++++.++++.  .+|      .+++|++++
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            999999888654  232      399999986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=4.8e-20  Score=161.74  Aligned_cols=261  Identities=9%  Similarity=0.050  Sum_probs=166.1

Q ss_pred             ccceEEEEECCCCCeEEEeec-CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      ...+ +++|+|+|++|++++. ++.|.+||..+++.                      ....+..+.            .
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~----------------------~~~~~~~~~------------~   84 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP----------------------KVVAIQEGQ------------S   84 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC----------------------EEEEEEECS------------S
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce----------------------eEEecccCC------------C
Confidence            4456 9999999997766655 88999999887652                      022333343            3


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCC---eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      +..+++|+|  +|++++++..++   .|.+||+.+++..........+                ..++|+|+|+.+    
T Consensus        85 ~~~~~~~s~--dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~----------------~~~~~spdg~~l----  142 (331)
T 3u4y_A           85 SMADVDITP--DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDA----------------VGIAISPNGNGL----  142 (331)
T ss_dssp             CCCCEEECT--TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTE----------------EEEEECTTSSCE----
T ss_pred             CccceEECC--CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCc----------------cceEECCCCCEE----
Confidence            344499965  488888555553   9999999998877665443221                268999999876    


Q ss_pred             ccccCccccCCCCCce-eeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE-e-cCCeEEEEeCCCCCce
Q 015363          191 GCASNDSSFPPGGVSS-LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQS  267 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~  267 (408)
                             +++...++. |.+|+ +.......... ...  .........++|+|++++++. + .++.|.+||+.+....
T Consensus       143 -------~~~~~~~~~~i~~~~-~~~~g~~~~~~-~~~--~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~  211 (331)
T 3u4y_A          143 -------ILIDRSSANTVRRFK-IDADGVLFDTG-QEF--ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI  211 (331)
T ss_dssp             -------EEEEETTTTEEEEEE-ECTTCCEEEEE-EEE--ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred             -------EEEecCCCceEEEEE-ECCCCcEeecC-Ccc--ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence                   244455577 99999 54322111111 111  123345789999999996655 4 6899999999854431


Q ss_pred             --eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEE-eCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          268 --FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       268 --~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                        ...       +. ....+..++|+|+| ++++++ ..++.|.+||+.+++...  +..+...-..     ........
T Consensus       212 ~~~~~-------~~-~~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~-----~~~~~~~~  275 (331)
T 3u4y_A          212 TLLNA-------VG-TNNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSF--VKSFGHGLLI-----DPRPLFGA  275 (331)
T ss_dssp             EEEEE-------EE-CSSCCCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEE--EEEEECCCCC-----CCGGGTTC
T ss_pred             ceeee-------cc-CCCCCceEEECCCC-CEEEEEEcCCCEEEEEECCCCceee--eccccccccc-----CCCCcccc
Confidence              222       22 23556789999999 655444 457899999999886510  1111111000     00001223


Q ss_pred             EEEEEccCCCEEEEe-CC-CeEEEEECCCCCCceeeeee
Q 015363          345 SDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       345 ~~~~~spdg~~l~s~-~d-~~v~~wd~~~~~~~~~~~~~  381 (408)
                      ..++|+|||++|+++ .+ +.|.+||+..  +.+..+.+
T Consensus       276 ~~~~~spdg~~l~v~~~~~~~v~v~d~~~--~~~~~~~~  312 (331)
T 3u4y_A          276 NQMALNKTETKLFISANISRELKVFTISG--KVVGYVAG  312 (331)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTS--CEEEECTT
T ss_pred             cceEECCCCCEEEEecCCCCcEEEEEecC--Ccccceec
Confidence            568999999988755 44 8999999975  44444433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=9.4e-21  Score=184.64  Aligned_cols=283  Identities=10%  Similarity=0.075  Sum_probs=172.0

Q ss_pred             ccceEEEEECCCCCeEEEeec-CC-----eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDR-GG-----RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ...|.+++|||||++|++++. |+     .|++||+.+++..    +.+.....    .|+.+.+.. .  .........
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~----~~~~~~~~----~~~~~~~~~-~--~~~~~~~~~  104 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR----LLVDSKVV----LPGTETLSD-E--EKARRERQR  104 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE----EEECGGGT----C---------------------
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee----Eccchhhc----ccccccccc-h--hhhhhhhhh
Confidence            456899999999999999998 88     8999999877531    00000000    000000000 0  000000000


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC---cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                      ......|.+++|+|+  |++|++++. +.|++||+.++   +.......         .+.+.       .+.|+|||+.
T Consensus       105 ~~~~~~v~~~~~SpD--g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~---------~~~~~-------~~~~SPDG~~  165 (741)
T 2ecf_A          105 IAAMTGIVDYQWSPD--AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHG---------EGFAT-------DAKLSPKGGF  165 (741)
T ss_dssp             --CCEESCCCEECTT--SSEEEEEET-TEEEEEESSSCSTTSCCBCCCS---------SSCEE-------EEEECTTSSE
T ss_pred             hccccCcceeEECCC--CCEEEEEeC-CcEEEEECCCCCcceEEEcccC---------Ccccc-------cccCCCCCCE
Confidence            000034789999654  889998886 99999999987   44322111         12233       6899999998


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeecccccc----------------ceEEEEeCCCCCEEE
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY----------------HINSISNNSDGETFI  249 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~v~~i~~~~~~~~l~  249 (408)
                      +            +.++ ++.|.+|+ +.....      .+. ...+..                .+..++|+|||+.|+
T Consensus       166 l------------a~~~-~~~i~~~d-~~~g~~------~~~-~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~  224 (741)
T 2ecf_A          166 V------------SFIR-GRNLWVID-LASGRQ------MQL-TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA  224 (741)
T ss_dssp             E------------EEEE-TTEEEEEE-TTTTEE------EEC-CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE
T ss_pred             E------------EEEe-CCcEEEEe-cCCCCE------EEe-ccCCccceeccccceeeeeccccccceEECCCCCEEE
Confidence            7            4443 45899998 433211      111 111111                247799999999998


Q ss_pred             Ee-cCC---------------------------------eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCC
Q 015363          250 SA-DDL---------------------------------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC  295 (408)
Q Consensus       250 ~~-~d~---------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  295 (408)
                      ++ .|+                                 .|.+||+.+.+....+.     ....|...+..++| |+| 
T Consensus       225 ~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~-pDg-  297 (741)
T 2ecf_A          225 YARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWID-----LGKEQDIYLARVNW-RDP-  297 (741)
T ss_dssp             EEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEEC-----CCSCSSEEEEEEEE-EET-
T ss_pred             EEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEec-----CCCCcceEEEEEEe-CCC-
Confidence            87 544                                 78889988403333221     01246778999999 999 


Q ss_pred             ceEEEEeC-----CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363          296 NMLAYSSS-----KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       296 ~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~  369 (408)
                      +.|++++.     +..|++||+.+++..    ..+..+..        +....+..++|+|||+++++++ ++.+.||.+
T Consensus       298 ~~l~~~~~~~~~~~~~i~~~d~~~g~~~----~~~~~~~~--------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  365 (741)
T 2ecf_A          298 QHLSFQRQSRDQKKLDLVEVTLASNQQR----VLAHETSP--------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRI  365 (741)
T ss_dssp             TEEEEEEEETTSSEEEEEEEETTTCCEE----EEEEEECS--------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEE
T ss_pred             CEEEEEEecccCCeEEEEEEECCCCceE----EEEEcCCC--------CcCCcCCceEECCCCeEEEEecCCCccEEEEE
Confidence            77776653     568999999988643    33333310        0001345789999999888875 587888877


Q ss_pred             CCCCCceeeeeecccccce
Q 015363          370 NMDSGPVATFQVHEHLRPK  388 (408)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~  388 (408)
                      +..+. ...+..|......
T Consensus       366 ~~~~~-~~~l~~~~~~v~~  383 (741)
T 2ecf_A          366 DSKGK-AAALTHGNWSVDE  383 (741)
T ss_dssp             CSSSC-EEESCCSSSCEEE
T ss_pred             cCCCC-eeeeeecceEEEe
Confidence            64455 7777776554433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=2.1e-19  Score=159.11  Aligned_cols=265  Identities=9%  Similarity=0.054  Sum_probs=177.9

Q ss_pred             eeeccceEEEEECCCCCeEEEeec-------CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDR-------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD  104 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  104 (408)
                      ......+..++|+|++++|++++.       ++.|.+||..+++.                       ...+...     
T Consensus        37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~-----   88 (353)
T 3vgz_A           37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-----------------------TQAIHND-----   88 (353)
T ss_dssp             EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-----------------------EEEEEES-----
T ss_pred             hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-----------------------EEEEecC-----
Confidence            345567889999999998888774       56899999877653                       2222221     


Q ss_pred             cccccccccceeEEEEeecCCCcEEEE-EeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363          105 YLKSLEIEEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG  183 (408)
Q Consensus       105 ~~~~~~~~~~v~~v~~~p~~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  183 (408)
                              ..+..++|+|+  |+++++ ...++.|.+||..+++....+......... ....     ..+..+.++|+|
T Consensus        89 --------~~~~~~~~s~d--g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~s~dg  152 (353)
T 3vgz_A           89 --------LKPFGATINNT--TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE-EVRP-----LQPRELVADDAT  152 (353)
T ss_dssp             --------SCCCSEEEETT--TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS-SCCC-----CEEEEEEEETTT
T ss_pred             --------CCcceEEECCC--CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc-ccCC-----CCCceEEECCCC
Confidence                    33778999754  775544 556899999999999887766553211000 0000     011268999999


Q ss_pred             CeeecccccccCccccCC--CCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEe
Q 015363          184 GCGERNFGCASNDSSFPP--GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN  260 (408)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd  260 (408)
                      +.+            +.+  +.++.|.+|| ...      .+....+ ..+...+.+++|+|+++.++++ .++.|.+||
T Consensus       153 ~~l------------~~~~~~~~~~i~~~d-~~~------~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d  212 (353)
T 3vgz_A          153 NTV------------YISGIGKESVIWVVD-GGN------IKLKTAI-QNTGKMSTGLALDSEGKRLYTTNADGELITID  212 (353)
T ss_dssp             TEE------------EEEEESSSCEEEEEE-TTT------TEEEEEE-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEE
T ss_pred             CEE------------EEEecCCCceEEEEc-CCC------CceEEEe-cCCCCccceEEECCCCCEEEEEcCCCeEEEEE
Confidence            976            443  3578899999 432      2222222 3244557889999999999988 899999999


Q ss_pred             CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEE-eCCCeEEEEEcCCCceecccccccccccCCCCcccccc
Q 015363          261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE  339 (408)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (408)
                      ..+ .+....+..   ...++...+..++|+|++ +.++++ ..++.|.+||+.+++..    ..+...           
T Consensus       213 ~~~-~~~~~~~~~---~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~~-----------  272 (353)
T 3vgz_A          213 TAD-NKILSRKKL---LDDGKEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRNGNIL----AKVAAP-----------  272 (353)
T ss_dssp             TTT-TEEEEEEEC---CCSSSCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTTCCEE----EEEECS-----------
T ss_pred             CCC-CeEEEEEEc---CCCCCCcccceEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE----EEEEcC-----------
Confidence            984 444433321   112345567899999999 655444 45699999999988654    333322           


Q ss_pred             ccceeEEEEEccCCCEEEEe-C-CCeEEEEECCCCCCceeeeeeccc
Q 015363          340 IIASISDIKFARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       340 h~~~i~~~~~spdg~~l~s~-~-d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                        . ...++|+|+|++|+.+ . ++.|.+||+.+ ++.+..+.....
T Consensus       273 --~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~  315 (353)
T 3vgz_A          273 --E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKS-YKVVKTFDTPTH  315 (353)
T ss_dssp             --S-CCCEEEETTTTEEEEEETTTTEEEEEETTT-TEEEEEEECCSE
T ss_pred             --C-CceEEECCCCCEEEEEECCCCeEEEEECCC-CeEEEEEecCCC
Confidence              1 2468999999966654 3 59999999987 687777766543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=7.7e-19  Score=154.05  Aligned_cols=240  Identities=8%  Similarity=0.060  Sum_probs=157.4

Q ss_pred             EECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEE
Q 015363           42 EFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW  120 (408)
Q Consensus        42 ~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~  120 (408)
                      .|.+++. .+++++.++.|.+||..+++.                       ...+..+.            ..+ .++|
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~------------~~~-~~~~   47 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEI-----------------------LNQITLGY------------DFV-DTAI   47 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECCC------------CEE-EEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccce-----------------------eeeEEccC------------Ccc-eEEE
Confidence            4555544 577888899999999887753                       22333333            446 8999


Q ss_pred             eecCCCcEEEEEe-CCCeEEEEEcCCCcE-EEEeccCCCCcccCCCCCeEeecCCcee-eEEccCCCeeecccccccCcc
Q 015363          121 CQSANSALYLLST-NDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIP-KSYMANGGCGERNFGCASNDS  197 (408)
Q Consensus       121 ~p~~~~~~l~~~~-~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  197 (408)
                      +|+  |+++++++ .++.|.+||+.+++. .........+                .. ++++|+|+.+           
T Consensus        48 s~d--g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~----------------~~~~~~s~dg~~l-----------   98 (331)
T 3u4y_A           48 TSD--CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS----------------MADVDITPDDQFA-----------   98 (331)
T ss_dssp             CSS--SCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC----------------CCCEEECTTSSEE-----------
T ss_pred             cCC--CCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC----------------ccceEECCCCCEE-----------
Confidence            655  77666665 489999999998876 4444333221                14 8999999987           


Q ss_pred             ccCCCCC-c--eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCe-EEEEeCCCCCceeeEe
Q 015363          198 SFPPGGV-S--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR-INLWNLEISNQSFNIV  271 (408)
Q Consensus       198 ~~~~~~~-~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~-i~iwd~~~~~~~~~~~  271 (408)
                       ++...+ +  .|.+|| +...      +....+  .......+++|+|+|++++++  .++. |.+|++...+......
T Consensus        99 -~~~~~~~~~~~i~v~d-~~~~------~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~  168 (331)
T 3u4y_A           99 -VTVTGLNHPFNMQSYS-FLKN------KFISTI--PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG  168 (331)
T ss_dssp             -EECCCSSSSCEEEEEE-TTTT------EEEEEE--ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred             -EEecCCCCcccEEEEE-CCCC------CeEEEE--ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence             544444 3  899999 4322      222222  223456899999999866554  5677 9999998544432221


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                       .  . .......+..++|+|++..+++++..++.|.+||+.+++.. ..+..+...             ..+..++|+|
T Consensus       169 -~--~-~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~~~-------------~~~~~~~~sp  230 (331)
T 3u4y_A          169 -Q--E-FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-TLLNAVGTN-------------NLPGTIVVSR  230 (331)
T ss_dssp             -E--E-EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-EEEEEEECS-------------SCCCCEEECT
T ss_pred             -C--c-cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-ceeeeccCC-------------CCCceEEECC
Confidence             0  0 11234457899999999335555557899999999987641 011333333             4567899999


Q ss_pred             CCCEEEEe-C-CCeEEEEECCCCCCc
Q 015363          352 NGRHILSR-D-YMTLKLWDINMDSGP  375 (408)
Q Consensus       352 dg~~l~s~-~-d~~v~~wd~~~~~~~  375 (408)
                      ||++|+.+ . ++.|.+||+.+ ++.
T Consensus       231 dg~~l~v~~~~~~~i~~~d~~~-~~~  255 (331)
T 3u4y_A          231 DGSTVYVLTESTVDVFNFNQLS-GTL  255 (331)
T ss_dssp             TSSEEEEECSSEEEEEEEETTT-TEE
T ss_pred             CCCEEEEEEcCCCEEEEEECCC-Cce
Confidence            99987765 3 48999999987 555

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=1.6e-18  Score=154.07  Aligned_cols=265  Identities=10%  Similarity=0.040  Sum_probs=161.9

Q ss_pred             eccceEEEEECCCCCeEEEeecC----CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRG----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      +...+..++|+|+|++|++++.+    +.|.+|+++....                   ..+.+.....+.         
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-------------------~~~~~~~~~~~~---------   99 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-------------------TLHLLNTQKTMG---------   99 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-------------------EEEEEEEEECSS---------
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-------------------cEEEeeEeccCC---------
Confidence            67778889999999999998875    7999999875311                   111222233232         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCCCcEEE----EeccCCCCc--ccCCCCCeEeecCCceeeEEccC
Q 015363          110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKK----VFDWNVHPE--KAAGNGPIFGSHVSAIPKSYMAN  182 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~~~~~~----~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~  182 (408)
                         .....+++    +++++++++ .++.|.+|++.......    .........  ......       ....++|+|+
T Consensus       100 ---~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~spd  165 (361)
T 3scy_A          100 ---ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMP-------HLHCVRITPD  165 (361)
T ss_dssp             ---SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSC-------CEEEEEECTT
T ss_pred             ---CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCC-------cceEEEECCC
Confidence               33666666    366776665 68899999997532211    111110000  000001       1125899999


Q ss_pred             CCeeecccccccCccccCCCCCceeeeceeeecccc----c-cccc-cceeeccccccceEEEEeCCCCCEEEEe--cCC
Q 015363          183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET----N-LVAG-CRRIYAHAHDYHINSISNNSDGETFISA--DDL  254 (408)
Q Consensus       183 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~-~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~  254 (408)
                      |+.+           +++...++.|.+|+ +.....    . .... ........+...++.++|+|+|++++++  .++
T Consensus       166 g~~l-----------~~~~~~~~~v~v~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  233 (361)
T 3scy_A          166 GKYL-----------LADDLGTDQIHKFN-INPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG  233 (361)
T ss_dssp             SSEE-----------EEEETTTTEEEEEE-ECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred             CCEE-----------EEEeCCCCEEEEEE-EcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence            9976           24555688999998 543221    0 0000 0011112334567899999999977765  689


Q ss_pred             eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC--CCeEEEEEcC--CCceecccccccccccC
Q 015363          255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMR--QSALCDTHSKLFEEQEA  330 (408)
Q Consensus       255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~--~~~~~~~~~~~~~~~~~  330 (408)
                      .|.+||+. .+.......+  .....+......++|+|+| ++|+++..  ++.|.+|++.  +++..  .+..+..   
T Consensus       234 ~v~v~~~~-~g~~~~~~~~--~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~--~~~~~~~---  304 (361)
T 3scy_A          234 TVIAFRYA-DGMLDEIQTV--AADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLT--KVGYQLT---  304 (361)
T ss_dssp             EEEEEEEE-TTEEEEEEEE--ESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEE--EEEEEEC---
T ss_pred             eEEEEEec-CCceEEeEEE--ecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEE--EeeEecC---
Confidence            99999998 3333222111  1123344557899999999 76655554  5899999996  33321  1122221   


Q ss_pred             CCCccccccccceeEEEEEccCCCEEEEeC--CCeEEEEECCC
Q 015363          331 PGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINM  371 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~  371 (408)
                                ...+.+++|+|||++|++++  ++.|.+|+++.
T Consensus       305 ----------g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          305 ----------GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             ----------SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             ----------CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence                      13577899999999888874  49999976653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.86  E-value=5.8e-20  Score=179.04  Aligned_cols=273  Identities=8%  Similarity=0.023  Sum_probs=169.2

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCC---CCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDT---RDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      ..|.+++|||||++|++++. +.|++||+.++   ..                        ..+..|.            
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~------------------------~~l~~~~------------  151 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV------------------------RQLTHGE------------  151 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC------------------------CBCCCSS------------
T ss_pred             cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE------------------------EEcccCC------------
Confidence            34889999999999999886 89999999876   32                        2344454            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEee-cCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS-HVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      ..+.+++|+|+  |++|++++ ++.|++||+.+++...................+... ......++|+|||+.|.....
T Consensus       152 ~~~~~~~~SPD--G~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~  228 (741)
T 2ecf_A          152 GFATDAKLSPK--GGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI  228 (741)
T ss_dssp             SCEEEEEECTT--SSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred             cccccccCCCC--CCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence            56999999755  88898887 469999999988766544332110000000000000 001126899999998743211


Q ss_pred             cccC-------------------ccccCCCCCc--eeeeceeeec-cccccccccceeec-cccccceEEEEeCCCCCEE
Q 015363          192 CASN-------------------DSSFPPGGVS--SLRLPVVVTS-QETNLVAGCRRIYA-HAHDYHINSISNNSDGETF  248 (408)
Q Consensus       192 ~~~~-------------------~~~~~~~~~~--~i~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l  248 (408)
                      ....                   .+-..+..+.  .|.+|| +.. .+      ...... ..|...+..++| |||+.|
T Consensus       229 d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d-~~~~~~------~~~~~~~~~~~~~~~~~~~-pDg~~l  300 (741)
T 2ecf_A          229 DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS-PAEQAQ------TQWIDLGKEQDIYLARVNW-RDPQHL  300 (741)
T ss_dssp             ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC-SSTTCC------CEEECCCSCSSEEEEEEEE-EETTEE
T ss_pred             cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE-CCCCCc------eEEecCCCCcceEEEEEEe-CCCCEE
Confidence            1000                   0001111122  566666 322 21      111111 146778999999 999999


Q ss_pred             EEe-c-----CCeEEEEeCCCCCceeeEeecCCCcccCCc-C---CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          249 ISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLT-E---VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       249 ~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~---~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      +.+ .     +..|++||+.++ ....+.       ..+. .   .+..++|+|+| +++++++.|+.++||.+......
T Consensus       301 ~~~~~~~~~~~~~i~~~d~~~g-~~~~~~-------~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~~  371 (741)
T 2ecf_A          301 SFQRQSRDQKKLDLVEVTLASN-QQRVLA-------HETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGKA  371 (741)
T ss_dssp             EEEEEETTSSEEEEEEEETTTC-CEEEEE-------EEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSCE
T ss_pred             EEEEecccCCeEEEEEEECCCC-ceEEEE-------EcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCCCe
Confidence            865 2     568999999854 343332       1122 1   34578999999 78899999998888876522112


Q ss_pred             cccccccccccCCCCccccccccceeEEE-EEccCCCEEEE-eC-CC--eEEEEECCCCCCceeeeee
Q 015363          319 DTHSKLFEEQEAPGTRSFFTEIIASISDI-KFARNGRHILS-RD-YM--TLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~-~~spdg~~l~s-~~-d~--~v~~wd~~~~~~~~~~~~~  381 (408)
                          ..+..+            ...|..+ .|+|||+.|+. ++ ++  .++||+++..+...+.+..
T Consensus       372 ----~~l~~~------------~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~  423 (741)
T 2ecf_A          372 ----AALTHG------------NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK  423 (741)
T ss_dssp             ----EESCCS------------SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC
T ss_pred             ----eeeeec------------ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc
Confidence                344433            2467776 59999997764 44 34  8999999765665666655

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.85  E-value=7.6e-19  Score=154.32  Aligned_cols=246  Identities=9%  Similarity=0.063  Sum_probs=164.4

Q ss_pred             CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec-cCCccccccccccccc-ceeEEEEeecCC
Q 015363           48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEE-KINKIRWCQSAN  125 (408)
Q Consensus        48 ~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~~~~~~~-~v~~v~~~p~~~  125 (408)
                      ++|++++.++.|.+||..+++.                       ...+. ++.            . .+..++|+|+  
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~------------~~~~~~~~~s~d--   44 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAV-----------------------DKVITIADA------------GPTPMVPMVAPG--   44 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-----------------------EEEEECTTC------------TTCCCCEEECTT--
T ss_pred             cEEEEcCCCCeEEEEECCCCcE-----------------------EEEEEcCCC------------CCCccceEEcCC--
Confidence            4789999999999999877642                       22222 221            1 3788999654  


Q ss_pred             CcEE-EEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCC--
Q 015363          126 SALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG--  202 (408)
Q Consensus       126 ~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--  202 (408)
                      |+.+ +++..++.|.+||+.+++....+.......          ....+..+.++|+|+.+            +++.  
T Consensus        45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~dg~~l------------~~~~~~  102 (337)
T 1pby_B           45 GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE----------RVKSLFGAALSPDGKTL------------AIYESP  102 (337)
T ss_dssp             SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE----------EEECTTCEEECTTSSEE------------EEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc----------ccccccceEECCCCCEE------------EEEecc
Confidence            7655 555678999999999988776554422000          00012268899999887            4443  


Q ss_pred             ----------CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEee
Q 015363          203 ----------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       203 ----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~  272 (408)
                                .++.|.+|| +...      +....+ . ....+.+++|+|++++|+++ ++.|.+||+.+. +....+.
T Consensus       103 ~~~~~~~~~~~~~~i~v~d-~~~~------~~~~~~-~-~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~-~~~~~~~  171 (337)
T 1pby_B          103 VRLELTHFEVQPTRVALYD-AETL------SRRKAF-E-APRQITMLAWARDGSKLYGL-GRDLHVMDPEAG-TLVEDKP  171 (337)
T ss_dssp             EEECSSCEEECCCEEEEEE-TTTT------EEEEEE-E-CCSSCCCEEECTTSSCEEEE-SSSEEEEETTTT-EEEEEEC
T ss_pred             cccccccccccCceEEEEE-CCCC------cEEEEE-e-CCCCcceeEECCCCCEEEEe-CCeEEEEECCCC-cEeeeee
Confidence                      578999999 4321      122222 1 13457788999999988877 678999999843 3332222


Q ss_pred             cCC--C--c-------------------------------------------------------ccCCcCCeEEEEEcCC
Q 015363          273 VKP--A--N-------------------------------------------------------MEDLTEVITSAEFHPT  293 (408)
Q Consensus       273 ~~~--~--~-------------------------------------------------------~~~~~~~v~~~~~~p~  293 (408)
                      ...  .  .                                                       +..+...+.+++|+|+
T Consensus       172 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d  251 (337)
T 1pby_B          172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA  251 (337)
T ss_dssp             STTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT
T ss_pred             ccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCC
Confidence            110  0  0                                                       0112234567999999


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCC
Q 015363          294 HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMD  372 (408)
Q Consensus       294 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~  372 (408)
                      + ++++++  ++.|.+||+.+++..    ..+...             ..+.+++|+|||++|++++ ++.|.+||+.+ 
T Consensus       252 g-~~l~~~--~~~v~~~d~~~~~~~----~~~~~~-------------~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~-  310 (337)
T 1pby_B          252 K-TRAFGA--YNVLESFDLEKNASI----KRVPLP-------------HSYYSVNVSTDGSTVWLGGALGDLAAYDAET-  310 (337)
T ss_dssp             S-SEEEEE--ESEEEEEETTTTEEE----EEEECS-------------SCCCEEEECTTSCEEEEESBSSEEEEEETTT-
T ss_pred             C-CEEEEe--CCeEEEEECCCCcCc----ceecCC-------------CceeeEEECCCCCEEEEEcCCCcEEEEECcC-
Confidence            9 777777  799999999987654    333322             3567899999999888875 69999999997 


Q ss_pred             CCceeeeeeccc
Q 015363          373 SGPVATFQVHEH  384 (408)
Q Consensus       373 ~~~~~~~~~~~~  384 (408)
                      ++.+..+..+..
T Consensus       311 ~~~~~~~~~~~~  322 (337)
T 1pby_B          311 LEKKGQVDLPGN  322 (337)
T ss_dssp             CCEEEEEECGGG
T ss_pred             CcEEEEEEcCCC
Confidence            788888876644

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=4.8e-20  Score=179.17  Aligned_cols=245  Identities=11%  Similarity=0.067  Sum_probs=156.3

Q ss_pred             ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccccee
Q 015363           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  116 (408)
                      .+.+++|+|||+++++ +.||+|++||..+++.                       ...+.+|...         ...|.
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-----------------------~~~~~~~~~~---------~~~v~   64 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-----------------------TVLIEGKKIE---------SLRAI   64 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-----------------------EEEECTTTTT---------TTTCS
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-----------------------EEEecccccc---------ccccc
Confidence            3678999999998776 6899999999987753                       2234444310         01489


Q ss_pred             EEEEeecCCCcEEEEEeCC---------CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          117 KIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                      +++|+|+  |++|++++.+         +.+.+||+.+++.........+      ...+.       .+.|+|||+.+ 
T Consensus        65 ~~~~SpD--g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~------~~~~~-------~~~~SPdG~~l-  128 (723)
T 1xfd_A           65 RYEISPD--REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS------NAKLQ-------YAGWGPKGQQL-  128 (723)
T ss_dssp             EEEECTT--SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC------SCCCS-------BCCBCSSTTCE-
T ss_pred             eEEECCC--CCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccc------ccccc-------ccEECCCCCEE-
Confidence            9999755  8899998764         7889999998876333222111      01122       57899999987 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeecccccc------------------ceEEEEeCCCCCEEE
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY------------------HINSISNNSDGETFI  249 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~v~~i~~~~~~~~l~  249 (408)
                                 +.++. +.|++|+ +...+.      .+.. ..+..                  .+.+++|+|||+.|+
T Consensus       129 -----------a~~~~-~~i~~~~-~~~g~~------~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la  188 (723)
T 1xfd_A          129 -----------IFIFE-NNIYYCA-HVGKQA------IRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (723)
T ss_dssp             -----------EEEET-TEEEEES-SSSSCC------EEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             -----------EEEEC-CeEEEEE-CCCCce------EEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEE
Confidence                       44443 6899988 433221      1111 22111                  237899999999998


Q ss_pred             Ee-cCC----------------------------------eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC
Q 015363          250 SA-DDL----------------------------------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH  294 (408)
Q Consensus       250 ~~-~d~----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  294 (408)
                      ++ .++                                  .|++||+.+......+ .. +.....+...+..++|+|||
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l-~~-~~~~~~~~~~~~~~~~SpDg  266 (723)
T 1xfd_A          189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM-MP-PDDPRMREYYITMVKWATST  266 (723)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC-CC-CCCGGGSSEEEEEEEESSSS
T ss_pred             EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe-eC-CccCCCccceeEEEEEeCCC
Confidence            87 332                                  7889998844322221 00 00112235678999999999


Q ss_pred             CceEEEEeC----CCeEEEEEcCCCceecccccccccccCCCCcccccccccee----EEEEEccCCCEEEEe---CCC-
Q 015363          295 CNMLAYSSS----KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI----SDIKFARNGRHILSR---DYM-  362 (408)
Q Consensus       295 ~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i----~~~~~spdg~~l~s~---~d~-  362 (408)
                       +++++...    +..|++||+.+++..    ..+..+.           ...+    ..++|+|||+.|+..   .++ 
T Consensus       267 -~~l~~~~~~~~~~~~i~~~d~~~g~~~----~~~~~~~-----------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  330 (723)
T 1xfd_A          267 -KVAVTWLNRAQNVSILTLCDATTGVCT----KKHEDES-----------EAWLHRQNEEPVFSKDGRKFFFIRAIPQGG  330 (723)
T ss_dssp             -EEEEEEEETTSCEEEEEEEETTTCCEE----EEEEEEC-----------SSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred             -eEEEEEEcCCCCeEEEEEEeCCCCcce----EEEEecc-----------CCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence             78876653    358999999988643    2222221           1222    368999999977743   246 


Q ss_pred             -----eEEEEE
Q 015363          363 -----TLKLWD  368 (408)
Q Consensus       363 -----~v~~wd  368 (408)
                           .|.+||
T Consensus       331 ~~~~~~l~~~d  341 (723)
T 1xfd_A          331 RGKFYHITVSS  341 (723)
T ss_dssp             SSCEEEEEEEC
T ss_pred             CcceeEEEEEe
Confidence                 566777

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=2e-19  Score=170.31  Aligned_cols=260  Identities=10%  Similarity=0.003  Sum_probs=172.9

Q ss_pred             eccceEEEEECCCCCeEEEeec-CCeEEEEEeCCCCCCCCccccccc---ccccccCCCccceeeeecc---CCc-cccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEM---MDYSMSRHPEFRYKTEFQS---HEP-EFDY  105 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~-dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~---h~~-~~~~  105 (408)
                      +..+|++++|+|||++||+++. ||+++||+++++..    .+....   ....+.++|+ +.+..-..   ... .+..
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~----~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET----VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE----EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc----EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence            4568999999999999999887 99999999866542    111111   1225677787 44332221   110 0000


Q ss_pred             cc--------ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceee
Q 015363          106 LK--------SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK  177 (408)
Q Consensus       106 ~~--------~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  177 (408)
                      +.        .+.....+...+|+|+.++..+++++.++ +.+||+.+++...+.....                  ..+
T Consensus        95 ~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~------------------~~~  155 (582)
T 3o4h_A           95 VNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG------------------FGF  155 (582)
T ss_dssp             EETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS------------------CEE
T ss_pred             EeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC------------------ceE
Confidence            00        11112235567898886554555555554 4599999988766654332                  168


Q ss_pred             EEccCCCeeecccccccCccccCCCCC----ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c
Q 015363          178 SYMANGGCGERNFGCASNDSSFPPGGV----SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D  252 (408)
Q Consensus       178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~  252 (408)
                      .|+|||+.+            +.++.+    ..|++|| +...+       .+. +..|...+..++|+|||+.|+++ .
T Consensus       156 ~~spDG~~l------------a~~~~~~~~~~~i~~~d-~~~g~-------~~~-l~~~~~~~~~~~~SpDG~~l~~~~~  214 (582)
T 3o4h_A          156 VSDIRGDLI------------AGLGFFGGGRVSLFTSN-LSSGG-------LRV-FDSGEGSFSSASISPGMKVTAGLET  214 (582)
T ss_dssp             EEEEETTEE------------EEEEEEETTEEEEEEEE-TTTCC-------CEE-ECCSSCEEEEEEECTTSCEEEEEEC
T ss_pred             EECCCCCEE------------EEEEEcCCCCeEEEEEc-CCCCC-------ceE-eecCCCccccceECCCCCEEEEccC
Confidence            999999998            544444    6788888 43321       122 35677888999999999999977 7


Q ss_pred             CC--eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEE--------EcCCCCceEEEEeCCCeEEEEEcCCCceecccc
Q 015363          253 DL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE--------FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS  322 (408)
Q Consensus       253 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  322 (408)
                      ++  .|++||+.++. .. .       +..|...+..++        |+|+| .++++++.|+++++|++  ++..    
T Consensus       215 ~~~~~i~~~d~~~~~-~~-~-------~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~----  278 (582)
T 3o4h_A          215 AREARLVTVDPRDGS-VE-D-------LELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERV----  278 (582)
T ss_dssp             SSCEEEEEECTTTCC-EE-E-------CCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEE----
T ss_pred             CCeeEEEEEcCCCCc-EE-E-------ccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCee----
Confidence            77  89999998543 33 3       345555555566        99999 99999999999999999  5432    


Q ss_pred             cccccccCCCCccccccccceeEEEEEccCCCEEEEe-CC---CeEEEEECC
Q 015363          323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY---MTLKLWDIN  370 (408)
Q Consensus       323 ~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d---~~v~~wd~~  370 (408)
                      .   ..            .+.|.+++|+ ++++++++ ++   ..+.+||..
T Consensus       279 ~---~~------------~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          279 E---AP------------QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             C---CC------------SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             c---cC------------CCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence            1   11            1468899999 99998876 34   456666654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=3.3e-19  Score=172.78  Aligned_cols=265  Identities=11%  Similarity=0.053  Sum_probs=162.0

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      ..|.+++|||| ..++.+ .++.|++||+.+++.                        ..+..+.            ..+
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~------------------------~~l~~~~------------~~~  123 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV------------------------TYLFDTN------------EET  123 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE------------------------EEEECCT------------TCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce------------------------EEccCCc------------ccc
Confidence            56999999999 655555 459999999877642                        2233344            558


Q ss_pred             eEEEEeecCCCcEEEEEeCCCeEEEEEcCC-----CcEEEEeccCCCCcccCCCCC-eEee-cCCceeeEEccCCCeeec
Q 015363          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGP-IFGS-HVSAIPKSYMANGGCGER  188 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~-v~~~-~~~~~~~~~~~~~~~l~~  188 (408)
                      .+++|+|+  |++|+++ .|+.|++|++.+     ++............ .  .+. +... ......++|+|||+.+..
T Consensus       124 ~~~~~Spd--G~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~-~--~g~~~~~ee~~~~~~~~~SpDg~~la~  197 (706)
T 2z3z_A          124 ASLDFSPV--GDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL-V--YGQAVHQREFGIEKGTFWSPKGSCLAF  197 (706)
T ss_dssp             TTCEECTT--SSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE-E--ESSCCGGGCTTCCCSEEECTTSSEEEE
T ss_pred             cCCcCCCC--CCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe-E--cccchhhhhcCCCceEEECCCCCEEEE
Confidence            88999755  8888884 789999999998     76655433322100 0  000 0000 001126899999998843


Q ss_pred             ccccccC-------------------ccccC--CCCCceeeeceeeeccccccccccceee-ccccccceEEEEeCCCCC
Q 015363          189 NFGCASN-------------------DSSFP--PGGVSSLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGE  246 (408)
Q Consensus       189 ~~~~~~~-------------------~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~  246 (408)
                      .......                   .+-..  ...+..|.+|| +...+.      .... ...|...+.+++|+|||+
T Consensus       198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d-~~~~~~------~~~~~~~~~~~~~~~~~~spdg~  270 (706)
T 2z3z_A          198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH-LATGKT------VYLQTGEPKEKFLTNLSWSPDEN  270 (706)
T ss_dssp             EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE-TTTTEE------EECCCCSCTTCEEEEEEECTTSS
T ss_pred             EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE-CCCCce------EeeccCCCCceeEeeEEEECCCC
Confidence            3210000                   00001  12446788888 433211      1111 124667799999999999


Q ss_pred             EEEEe-cCC-----eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcC--CCCceEEEEeCCCeEEEEEcC-CCce
Q 015363          247 TFISA-DDL-----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMR-QSAL  317 (408)
Q Consensus       247 ~l~~~-~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~-~~~~  317 (408)
                      .|+++ .++     .|.+||+.++.....+....   .......+..++|+|  +| +++++++.|+.++||++. .+..
T Consensus       271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~---~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~  346 (706)
T 2z3z_A          271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET---DKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRL  346 (706)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE---CSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCE
T ss_pred             EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc---CCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCE
Confidence            88886 554     89999998542333322100   011111245789999  99 899999899999999876 3332


Q ss_pred             ecccccccccccCCCCccccccccceeEE-EEEccCCCEEEEe-CC-C----eEEEEECCC
Q 015363          318 CDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHILSR-DY-M----TLKLWDINM  371 (408)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~spdg~~l~s~-~d-~----~v~~wd~~~  371 (408)
                      .    ..+..+            ...+.. ++|+|||+.|+.+ ++ +    .|..||+.+
T Consensus       347 ~----~~l~~~------------~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  391 (706)
T 2z3z_A          347 I----RQVTKG------------EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG  391 (706)
T ss_dssp             E----EECCCS------------SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred             E----EecCCC------------CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence            2    333333            245666 7999999987654 43 4    666667665

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=2.2e-18  Score=151.71  Aligned_cols=213  Identities=10%  Similarity=0.097  Sum_probs=134.5

Q ss_pred             cceeEEEEeecCCCcEEEEEeCC-CeEEEEEcC--CCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALYLLSTND-KTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d-~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..+.+++|+|+  |+++++++.+ +.|.+|++.  +++..........              ..+..++|+|+|+.+   
T Consensus        38 ~~~~~~~~spd--g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l---   98 (343)
T 1ri6_A           38 GQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP--------------GSLTHISTDHQGQFV---   98 (343)
T ss_dssp             SCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS--------------SCCSEEEECTTSSEE---
T ss_pred             CCCceEEECCC--CCEEEEeecCCCeEEEEEecCCCCceeeccccccC--------------CCCcEEEEcCCCCEE---
Confidence            55889999654  8888888876 999999998  5554433222111              011268999999976   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCce
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~  267 (408)
                              ++++..++.|.+|+ +....   .......+ . ....+.+++|+|+++.++++  .++.|.+||+...+..
T Consensus        99 --------~~~~~~~~~i~~~d-~~~~~---~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           99 --------FVGSYNAGNVSVTR-LEDGL---PVGVVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             --------EEEETTTTEEEEEE-EETTE---EEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             --------EEEecCCCeEEEEE-CCCCc---cccccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence                    23445588999999 53111   11122222 2 22458889999999877765  7999999999853433


Q ss_pred             eeEe--ecCCCcccCCcCCeEEEEEcCCCCceE-EEEeCCCeEEEEEcCC--CceecccccccccccCCCCccccccccc
Q 015363          268 FNIV--DVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIA  342 (408)
Q Consensus       268 ~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~  342 (408)
                      ....  ..    .......+..++|+|++ +++ +++..++.|.+|++..  +...  ..........     .+ ....
T Consensus       165 ~~~~~~~~----~~~~~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~-----~~-~~~~  231 (343)
T 1ri6_A          165 VAQDPAEV----TTVEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPE-----NF-SDTR  231 (343)
T ss_dssp             EEEEEEEE----ECSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCT-----TC-CSCC
T ss_pred             eeeccccc----ccCCCCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCc-----cc-cccC
Confidence            2211  11    11123467899999999 655 5555789999999964  3221  0011110000     00 0023


Q ss_pred             eeEEEEEccCCCEEEE-eC-CCeEEEEECCC
Q 015363          343 SISDIKFARNGRHILS-RD-YMTLKLWDINM  371 (408)
Q Consensus       343 ~i~~~~~spdg~~l~s-~~-d~~v~~wd~~~  371 (408)
                      .+..++|+|+|++|++ +. ++.|.+||++.
T Consensus       232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          232 WAADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence            5778999999998875 43 69999999983

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=6.2e-19  Score=155.72  Aligned_cols=256  Identities=11%  Similarity=0.063  Sum_probs=166.0

Q ss_pred             EEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEE
Q 015363           40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (408)
Q Consensus        40 ~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~  119 (408)
                      .+++++++.++++++.++.|.+||..+++.                       ...+..+..           ..+..++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~-----------~~~~~~~   49 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV-----------------------YKSCVMPDK-----------FGPGTAM   49 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSSC-----------CSSCEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcE-----------------------EEEEecCCC-----------CCCceeE
Confidence            456788899999999999999999887642                       222322210           1477899


Q ss_pred             EeecCCCcEEE-EEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363          120 WCQSANSALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (408)
Q Consensus       120 ~~p~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (408)
                      |+|+  |++++ ++..++.|.+||+.+++..........+.       .  ....+..+.++|+|+.+            
T Consensus        50 ~s~d--g~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~-------~--~~~~~~~~~~spdg~~l------------  106 (349)
T 1jmx_B           50 MAPD--NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG-------E--VGRSMYSFAISPDGKEV------------  106 (349)
T ss_dssp             ECTT--SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT-------E--EEECSSCEEECTTSSEE------------
T ss_pred             ECCC--CCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc-------c--ccccccceEECCCCCEE------------
Confidence            9654  76554 55578999999999988776555422100       0  00112268999999987            


Q ss_pred             cCCCC------------CceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCc
Q 015363          199 FPPGG------------VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ  266 (408)
Q Consensus       199 ~~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~  266 (408)
                      +++..            ++.|.+|| +.....   .......  .+...+.+++|+|+++ ++++ ++.|.+||..+.. 
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~i~~~d-~~~~~~---~~~~~~~--~~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~~~-  177 (349)
T 1jmx_B          107 YATVNPTQRLNDHYVVKPPRLEVFS-TADGLE---AKPVRTF--PMPRQVYLMRAADDGS-LYVA-GPDIYKMDVKTGK-  177 (349)
T ss_dssp             EEEEEEEEECSSCEEECCCEEEEEE-GGGGGG---BCCSEEE--ECCSSCCCEEECTTSC-EEEE-SSSEEEECTTTCC-
T ss_pred             EEEcccccccccccccCCCeEEEEE-CCCccc---cceeeec--cCCCcccceeECCCCc-EEEc-cCcEEEEeCCCCc-
Confidence            55543            38999999 543211   1111221  2234588899999999 4444 2239999998443 


Q ss_pred             eeeEeecCCCcc-------------------------------------------------------------cCCcCCe
Q 015363          267 SFNIVDVKPANM-------------------------------------------------------------EDLTEVI  285 (408)
Q Consensus       267 ~~~~~~~~~~~~-------------------------------------------------------------~~~~~~v  285 (408)
                      ....+.......                                                             ..+...+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (349)
T 1jmx_B          178 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY  257 (349)
T ss_dssp             EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcc
Confidence            333322210000                                                             0011245


Q ss_pred             EEEEEcC-CCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCe
Q 015363          286 TSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMT  363 (408)
Q Consensus       286 ~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~  363 (408)
                      ..++|+| ++ ++++++  ++.|.+||+.+++..    ..+...             ..+.+++|+|||++|++++ ++.
T Consensus       258 ~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~----~~~~~~-------------~~~~~~~~s~dg~~l~~~~~~~~  317 (349)
T 1jmx_B          258 FTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLI----KAANLD-------------HTYYCVAFDKKGDKLYLGGTFND  317 (349)
T ss_dssp             EEEEECSSCT-TEEEEE--ESEEEEEETTTTEEE----EEEECS-------------SCCCEEEECSSSSCEEEESBSSE
T ss_pred             eeeEecCCCC-CEEEEE--cCeEEEEECccCeEE----EEEcCC-------------CCccceEECCCCCEEEEecCCCe
Confidence            6778889 99 777777  889999999988654    333322             2467899999999888774 699


Q ss_pred             EEEEECCCCCCceeeeeec
Q 015363          364 LKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       364 v~~wd~~~~~~~~~~~~~~  382 (408)
                      |.+||+++ ++.+..++.+
T Consensus       318 v~v~d~~~-~~~~~~~~~~  335 (349)
T 1jmx_B          318 LAVFNPDT-LEKVKNIKLP  335 (349)
T ss_dssp             EEEEETTT-TEEEEEEECS
T ss_pred             EEEEeccc-cceeeeeecC
Confidence            99999987 6778777654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.84  E-value=4.7e-19  Score=172.18  Aligned_cols=270  Identities=10%  Similarity=0.054  Sum_probs=159.8

Q ss_pred             ceEEEEECCCCCeEEEeecC---------CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           37 IISAIEFDKSGDHLATGDRG---------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      .|.+++|||||++||+++.+         +.|.+||+.+++..                     .+....+|.       
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---------------------~l~~~~~~~-------  113 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ---------------------SLDPPEVSN-------  113 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE---------------------ECCCTTCCS-------
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE---------------------eccCCcccc-------
Confidence            49999999999999999764         78889999877521                     111223333       


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeec----------CCceee
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH----------VSAIPK  177 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------~~~~~~  177 (408)
                           ..+..++|+|+  |++|++++. +.|++||+.+++...+.......       .+....          .....+
T Consensus       114 -----~~~~~~~~SPd--G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~-------~~~~g~~~~v~~ee~~~~~~~~  178 (723)
T 1xfd_A          114 -----AKLQYAGWGPK--GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG-------VIYNGLSDWLYEEEILKTHIAH  178 (723)
T ss_dssp             -----CCCSBCCBCSS--TTCEEEEET-TEEEEESSSSSCCEEEECCCBTT-------TEEEEECCHHHHHTTSSSSEEE
T ss_pred             -----ccccccEECCC--CCEEEEEEC-CeEEEEECCCCceEEEecCCCCC-------ceECcccceeEEEEeccCcceE
Confidence                 45889999765  889988876 79999999998776655432211       000000          011268


Q ss_pred             EEccCCCeeecccccccC--c----------------ccc--CC--CCCceeeeceeeeccccccccccceeeccccccc
Q 015363          178 SYMANGGCGERNFGCASN--D----------------SSF--PP--GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH  235 (408)
Q Consensus       178 ~~~~~~~~l~~~~~~~~~--~----------------~~~--~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (408)
                      +|+|||+.|.........  .                +.+  .|  ..+..|.+|| +.............. ...+...
T Consensus       179 ~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d-~~~~~~~~~l~~~~~-~~~~~~~  256 (723)
T 1xfd_A          179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG-LNGPTHDLEMMPPDD-PRMREYY  256 (723)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE-SSSSCCCEECCCCCC-GGGSSEE
T ss_pred             EECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEE-CCCCceeEEeeCCcc-CCCccce
Confidence            999999987543211100  0                000  01  1123788888 433221000000000 1123577


Q ss_pred             eEEEEeCCCCCEEEEe-c----CCeEEEEeCCCCCceeeEeecCCCcccCCcCCe----EEEEEcCCCCceEEE--EeCC
Q 015363          236 INSISNNSDGETFISA-D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVI----TSAEFHPTHCNMLAY--SSSK  304 (408)
Q Consensus       236 v~~i~~~~~~~~l~~~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~p~~~~~l~s--~~~d  304 (408)
                      +..++|+|||+++++. .    +..|++||+.++ +...+..      ..+...+    ..++|+|+| +.|+.  +..+
T Consensus       257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~  328 (723)
T 1xfd_A          257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHE------DESEAWLHRQNEEPVFSKDG-RKFFFIRAIPQ  328 (723)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEE------EECSSCCCCCCCCCEECTTS-CSEEEEEEECC
T ss_pred             eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEE------eccCCEEeccCCCceEcCCC-CeEEEEEeccc
Confidence            8999999999988765 2    357999999844 3333321      1122333    378999999 65554  4556


Q ss_pred             C------eEEEEE-cCCCceecccccccccccCCCCccccccccceeE-EEEEccCCCEEEEe-C-C--CeEEEEECCCC
Q 015363          305 G------SIRLID-MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-DIKFARNGRHILSR-D-Y--MTLKLWDINMD  372 (408)
Q Consensus       305 g------~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~spdg~~l~s~-~-d--~~v~~wd~~~~  372 (408)
                      +      .|.+|| ...+...  ....+....            ..+. .++|+|||+.|+.. . +  +.++||+++..
T Consensus       329 ~~~~~~~~l~~~d~~~~~~~~--~~~~l~~~~------------~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          329 GGRGKFYHITVSSSQPNSSND--NIQSITSGD------------WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             SSSSCEEEEEEECSSCCSSSC--CCCBSCCSS------------SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             CCCcceeEEEEEeccCCCCcc--ceeEeecCC------------eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            7      566777 3333200  012232211            2344 36999999998754 3 3  78999998764


Q ss_pred             C
Q 015363          373 S  373 (408)
Q Consensus       373 ~  373 (408)
                      +
T Consensus       395 ~  395 (723)
T 1xfd_A          395 G  395 (723)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=1.1e-18  Score=158.20  Aligned_cols=230  Identities=10%  Similarity=0.124  Sum_probs=144.5

Q ss_pred             eeeccceEEEEECCCCCeEE----EeecCCeEEEEEeCCCCCCC-CcccccccccccccCCCccceeeeeccCCcccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLA----TGDRGGRVVLFERTDTRDNG-GQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~----sg~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  106 (408)
                      +.|...|++++|+|+|++||    +|+.|+.|+|||+.+..... ...+             .......+.+|.      
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~-------------~~~~~~~~~~h~------  149 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKR-------------PFAYHKLLKDAG------  149 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCC-------------CSEEEECCCSGG------
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcc-------------eeeeeeccCCCC------
Confidence            45667899999999999999    88999999999986541100 0000             011234456676      


Q ss_pred             cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                            ..|.+++|+|. ++.+|++++.||+|++||++++.....                                   
T Consensus       150 ------~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~~~~~~-----------------------------------  187 (434)
T 2oit_A          150 ------GMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTETVKVCA-----------------------------------  187 (434)
T ss_dssp             ------GSEEEEEECSS-CTTEEEEEETTSCEEEEEESSSEEEEE-----------------------------------
T ss_pred             ------CceEEEEECCC-CCCEEEEEECCCeEEEEEcCCCcceee-----------------------------------
Confidence                  77999999865 256999999999999999987632110                                   


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                                                ..+|...|++++|+|+|++|++| .|+.|++||.+ ..
T Consensus       188 ------------------------------------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~  224 (434)
T 2oit_A          188 ------------------------------------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ  224 (434)
T ss_dssp             ------------------------------------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC
T ss_pred             ------------------------------------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc
Confidence                                                      13455779999999999999999 99999999998 33


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEE-EeCCC------eEEEEEcCCCceecccccccccccCCCCccccc
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKG------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT  338 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (408)
                      . ...+.........|...|.+++|++++ .++++ ...||      .+++|+++...... + ..+.....+  ...+.
T Consensus       225 ~-~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~-~-~~~~~~~~~--~~~~~  298 (434)
T 2oit_A          225 E-KKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH-P-EIFVNFMEP--CYGSC  298 (434)
T ss_dssp             E-EEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC-C-CEEEECCCS--SCCCC
T ss_pred             c-cccccCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC-C-cceEecccC--CCCCC
Confidence            2 222211110011344579999999988 66544 33443      38999998653110 0 111111100  00001


Q ss_pred             cccceeEEEEEccCCCEEEEe-C-CCeEEEEECCC
Q 015363          339 EIIASISDIKFARNGRHILSR-D-YMTLKLWDINM  371 (408)
Q Consensus       339 ~h~~~i~~~~~spdg~~l~s~-~-d~~v~~wd~~~  371 (408)
                      +...+-..+.+-++.++++++ + ...|.+.....
T Consensus       299 ~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          299 TERQHHYYLSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             SSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             CCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence            111122234444777777765 3 36677777554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=8.6e-19  Score=169.85  Aligned_cols=256  Identities=10%  Similarity=0.075  Sum_probs=162.3

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCC-----CCCCCCcccccccccccccCCCccceeeeeccCCccc-cc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD-----TRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF-DY  105 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~-~~  105 (408)
                      ..+...+.+++|||||++||++ .++.|++|++.+     ++..                       .....+...+ ..
T Consensus       117 ~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~-----------------------~~~~~~~~~~~~g  172 (706)
T 2z3z_A          117 FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI-----------------------AVTIDGTETLVYG  172 (706)
T ss_dssp             ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE-----------------------ESCSCCBTTEEES
T ss_pred             cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE-----------------------EeccCCCCCeEcc
Confidence            3456778999999999999995 689999999987     5421                       0011111000 00


Q ss_pred             c-cccccccceeEEEEeecCCCcEEEEEe---------------------------------CCCeEEEEEcCCCcEEEE
Q 015363          106 L-KSLEIEEKINKIRWCQSANSALYLLST---------------------------------NDKTIKLWKVQEKKVKKV  151 (408)
Q Consensus       106 ~-~~~~~~~~v~~v~~~p~~~~~~l~~~~---------------------------------~d~~i~vwd~~~~~~~~~  151 (408)
                      . ...+....+.++.|+|+  |++|++++                                 .+..|.+||+.+++....
T Consensus       173 ~~~~~ee~~~~~~~~~SpD--g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~  250 (706)
T 2z3z_A          173 QAVHQREFGIEKGTFWSPK--GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL  250 (706)
T ss_dssp             SCCGGGCTTCCCSEEECTT--SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC
T ss_pred             cchhhhhcCCCceEEECCC--CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee
Confidence            0 00000134689999755  88999987                                 457899999998876554


Q ss_pred             eccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCC-----ceeeeceeeeccccccccccce
Q 015363          152 FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV-----SSLRLPVVVTSQETNLVAGCRR  226 (408)
Q Consensus       152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~  226 (408)
                      .....+      ...+.       .+.|+|||+.+            ++++.+     ..|.+|| +...+      ..+
T Consensus       251 ~~~~~~------~~~~~-------~~~~spdg~~l------------~~~~~~~~~~~~~v~~~d-~~~g~------~~~  298 (706)
T 2z3z_A          251 QTGEPK------EKFLT-------NLSWSPDENIL------------YVAEVNRAQNECKVNAYD-AETGR------FVR  298 (706)
T ss_dssp             CCCSCT------TCEEE-------EEEECTTSSEE------------EEEEECTTSCEEEEEEEE-TTTCC------EEE
T ss_pred             ccCCCC------ceeEe-------eEEEECCCCEE------------EEEEeCCCCCeeEEEEEE-CCCCc------eee
Confidence            322111      11233       68999999987            443333     4888888 43321      111


Q ss_pred             eec-ccccc---ceEEEEeCC--CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEE-EEEcCCCCceE
Q 015363          227 IYA-HAHDY---HINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS-AEFHPTHCNML  298 (408)
Q Consensus       227 ~~~-~~~~~---~v~~i~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l  298 (408)
                      .+. ..+..   .+..++|+|  +|++++++ .++.+++|+++........       +..+...+.. ++|+|++ +.|
T Consensus       299 ~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~-------l~~~~~~v~~~~~~spdg-~~l  370 (706)
T 2z3z_A          299 TLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ-------VTKGEWEVTNFAGFDPKG-TRL  370 (706)
T ss_dssp             EEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE-------CCCSSSCEEEEEEECTTS-SEE
T ss_pred             EEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe-------cCCCCeEEEeeeEEcCCC-CEE
Confidence            111 11111   245789999  99988888 7899999988633333332       4556666776 7999999 555


Q ss_pred             E-EEeCCC----eEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-C-C---CeEEEEE
Q 015363          299 A-YSSSKG----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-Y---MTLKLWD  368 (408)
Q Consensus       299 ~-s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~-d---~~v~~wd  368 (408)
                      + ++..++    .|..||+.++..     ..+. +            ...+.+++|+|||++|+.. + +   +.|++||
T Consensus       371 ~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~-~------------~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          371 YFESTEASPLERHFYCIDIKGGKT-----KDLT-P------------ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             EEEESSSCTTCBEEEEEETTCCCC-----EESC-C------------SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             EEEecCCCCceEEEEEEEcCCCCc-----eecc-C------------CCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence            4 444454    677777776542     2222 2            2468899999999988865 2 2   5799999


Q ss_pred             CCC
Q 015363          369 INM  371 (408)
Q Consensus       369 ~~~  371 (408)
                      +.+
T Consensus       433 ~~~  435 (706)
T 2z3z_A          433 IGK  435 (706)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=3.3e-18  Score=172.40  Aligned_cols=270  Identities=9%  Similarity=0.030  Sum_probs=182.9

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|...+.++.|+++ .++++++.++.++||.+.....                      ....+..|.           
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~----------------------~~~~l~~~~-----------  245 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK----------------------DLRKHTSFT-----------  245 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC----------------------SCEECCCCC-----------
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC----------------------cceEecCCC-----------
Confidence            468899999999988 6777888899999998764221                      112233332           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEc-cCCCeeeccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-ANGGCGERNF  190 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~~  190 (408)
                        .+..++|+|+  |++++++ .++.|.+|++...... .+.......    .............+.|+ |+|+.+    
T Consensus       246 --~~~~~~~SpD--G~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~----~~~~~~~~~~v~~~~~S~pdG~~l----  311 (1045)
T 1k32_A          246 --DYYPRHLNTD--GRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLES----PEDRIISIPSKFAEDFSPLDGDLI----  311 (1045)
T ss_dssp             --SSCEEEEEES--SSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCB----CCSEEEECGGGGEEEEEECGGGCE----
T ss_pred             --CcceeeEcCC--CCEEEEE-eCCEEEEecCCceEee-eeccCcccc----cccccccccccceeeecCCCCCEE----
Confidence              2566799866  7788877 5899999999555443 222211000    00001111122378999 999987    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeecccccc-ceEEEEeCCCCCEEEEe-cCCeEE-EEeCCCCCce
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY-HINSISNNSDGETFISA-DDLRIN-LWNLEISNQS  267 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~-~d~~i~-iwd~~~~~~~  267 (408)
                              +.++ ++.+.+|+ +....       ... +..|.. .+..++|+ +|+.|+.+ .+..+. +||+.. +..
T Consensus       312 --------a~~~-~~~i~~~~-~~~~~-------~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~~  371 (1045)
T 1k32_A          312 --------AFVS-RGQAFIQD-VSGTY-------VLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GKA  371 (1045)
T ss_dssp             --------EEEE-TTEEEEEC-TTSSB-------EEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CCE
T ss_pred             --------EEEE-cCEEEEEc-CCCCc-------eEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CCc
Confidence                    4444 77888888 43211       111 245555 79999999 99999988 777888 889883 333


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      ..        +..|...+..++|+|+| ++|++++.++.|++||+.+++..    ..+.+|            ...+.++
T Consensus       372 ~~--------l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~~~~~------------~~~v~~~  426 (1045)
T 1k32_A          372 EK--------FEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VIERSR------------EAMITDF  426 (1045)
T ss_dssp             EE--------CCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEECS------------SSCCCCE
T ss_pred             eE--------ecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceE----EeccCC------------CCCccce
Confidence            22        33677889999999999 99999999999999999988653    333344            3678899


Q ss_pred             EEccCCCEEEEeC-C----------CeEEEEECCCCCCceeeeeecccccceEEecCCCe
Q 015363          348 KFARNGRHILSRD-Y----------MTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNY  396 (408)
Q Consensus       348 ~~spdg~~l~s~~-d----------~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (408)
                      +|||||++|++++ +          +.|++||+.+ ++ +..+..|......+...-++.
T Consensus       427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~~~~~~spdG~  484 (1045)
T 1k32_A          427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADSK  484 (1045)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTSC
T ss_pred             EECCCCCeEEEEecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCcccCCceEcCCCC
Confidence            9999999998763 2          4899999986 44 666666655444443333444

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.81  E-value=2.4e-17  Score=145.82  Aligned_cols=238  Identities=8%  Similarity=0.048  Sum_probs=157.8

Q ss_pred             eeccceEEEEECCCCCeEE-EeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLA-TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~-sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      .....+..++|+|+|++++ ++..++.|.+||..+++.                       ...+..+....   .....
T Consensus        86 ~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~~~---~~~~~  139 (353)
T 3vgz_A           86 HNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV-----------------------KGRLVLDDRKR---TEEVR  139 (353)
T ss_dssp             EESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------------------EEEEESCCCCC---CSSCC
T ss_pred             ecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee-----------------------EEEEecCCCcc---ccccC
Confidence            3445678899999999554 455579999999887653                       12222221000   00000


Q ss_pred             ccceeEEEEeecCCCcEEEEEe--CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          112 EEKINKIRWCQSANSALYLLST--NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ...+.+++|+|+  |+++++++  .++.|.+||+.+++....+......               +..+.++|+|+.+   
T Consensus       140 ~~~~~~~~~s~d--g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---------------~~~~~~s~dg~~l---  199 (353)
T 3vgz_A          140 PLQPRELVADDA--TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM---------------STGLALDSEGKRL---  199 (353)
T ss_dssp             CCEEEEEEEETT--TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT---------------CCCCEEETTTTEE---
T ss_pred             CCCCceEEECCC--CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc---------------cceEEECCCCCEE---
Confidence            012688999755  77776665  5889999999999887766522110               1158899999987   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeec---cccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCC
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA---HAHDYHINSISNNSDGETFISA--DDLRINLWNLEIS  264 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~  264 (408)
                               +++..++.|.+|| ....+      ....+.   .++...+..++|+|+++.++++  .++.|.+||..+.
T Consensus       200 ---------~~~~~~~~i~~~d-~~~~~------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          200 ---------YTTNADGELITID-TADNK------ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             ---------EEECTTSEEEEEE-TTTTE------EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             ---------EEEcCCCeEEEEE-CCCCe------EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence                     7777789999999 43321      111111   1245568889999999977765  5799999999844


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                       +....+..       ..  ...++|+|++..++++...++.|.+||+.+++..    ..+...             ..+
T Consensus       264 -~~~~~~~~-------~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~----~~~~~~-------------~~~  316 (353)
T 3vgz_A          264 -NILAKVAA-------PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV----KTFDTP-------------THP  316 (353)
T ss_dssp             -CEEEEEEC-------SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE----EEEECC-------------SEE
T ss_pred             -cEEEEEEc-------CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE----EEEecC-------------CCC
Confidence             44443321       11  2469999999335555557999999999988654    333333             467


Q ss_pred             EEEEEccCCCEEEEe
Q 015363          345 SDIKFARNGRHILSR  359 (408)
Q Consensus       345 ~~~~~spdg~~l~s~  359 (408)
                      .+++|+|||++|+.+
T Consensus       317 ~~~~~s~dg~~l~v~  331 (353)
T 3vgz_A          317 NSLALSADGKTLYVS  331 (353)
T ss_dssp             EEEEECTTSCEEEEE
T ss_pred             CeEEEcCCCCEEEEE
Confidence            899999999977665

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=8.6e-19  Score=170.20  Aligned_cols=257  Identities=8%  Similarity=0.025  Sum_probs=157.9

Q ss_pred             EEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEE
Q 015363           40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (408)
Q Consensus        40 ~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~  119 (408)
                      +++|+|+|++++++ .|+.|++||+.+++.                       ...+.+|...         ...|.+++
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~-----------------------~~~~~~~~~~---------~~~~~~~~   66 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS-----------------------YTILSNRTMK---------SVNASNYG   66 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCE-----------------------EEEECHHHHH---------TTTCSEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcE-----------------------EEEEcccccc---------ccceeeEE
Confidence            77999999766655 699999999987753                       1222332200         01388999


Q ss_pred             EeecCCCcEEEEEeC---------CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          120 WCQSANSALYLLSTN---------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       120 ~~p~~~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      |+|+  |++|++++.         ++.|++||+.+++........         ..+.       .+.|+|||+.+    
T Consensus        67 ~SpD--g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---------~~~~-------~~~~SPDG~~l----  124 (719)
T 1z68_A           67 LSPD--RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---------RPIQ-------YLCWSPVGSKL----  124 (719)
T ss_dssp             ECTT--SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---------SSBC-------CEEECSSTTCE----
T ss_pred             ECCC--CCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---------cccc-------cceECCCCCEE----
Confidence            9754  889998876         789999999998762111111         1122       58999999987    


Q ss_pred             ccccCccccCCCCCceeeeceeeecccccccc---ccceeeccccccc---------eEEEEeCCCCCEEEEe-cC-C--
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVA---GCRRIYAHAHDYH---------INSISNNSDGETFISA-DD-L--  254 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------v~~i~~~~~~~~l~~~-~d-~--  254 (408)
                              +.+ .++.|++|+ +...+.....   ..... ..++...         ..+++|+|||+.|+.+ .| +  
T Consensus       125 --------a~~-~~~~i~~~~-~~~g~~~~l~~~~~~~~v-~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~  193 (719)
T 1z68_A          125 --------AYV-YQNNIYLKQ-RPGDPPFQITFNGRENKI-FNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDI  193 (719)
T ss_dssp             --------EEE-ETTEEEEES-STTSCCEECCCCCBTTTE-EESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTS
T ss_pred             --------EEE-ECCeEEEEe-CCCCCcEEEecCCCcCCe-EcccccceeeeecccCcccEEECCCCCEEEEEEECCCCC
Confidence                    444 367999998 4332211100   00000 0122111         2489999999999987 33 2  


Q ss_pred             -------------------------------eEEEEeCCCCCce--eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEE
Q 015363          255 -------------------------------RINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS  301 (408)
Q Consensus       255 -------------------------------~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  301 (408)
                                                     .|++||+.+....  ..+.  .+..+.+|...+..++|+||+ +++++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SpD~-~~~~~~  270 (719)
T 1z68_A          194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP--VPAMIASSDYYFSWLTWVTDE-RVCLQW  270 (719)
T ss_dssp             CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC--CCHHHHTSCEEEEEEEESSSS-EEEEEE
T ss_pred             ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc--CCccCCCCcceEEEeEEeCCC-eEEEEE
Confidence                                           7889998843321  1110  011234677889999999998 877775


Q ss_pred             eCC----CeEEEEE----cCCCceeccccccc----ccccCCCCccccccccceeE-----EEEEccCCCEEEE--e-CC
Q 015363          302 SSK----GSIRLID----MRQSALCDTHSKLF----EEQEAPGTRSFFTEIIASIS-----DIKFARNGRHILS--R-DY  361 (408)
Q Consensus       302 ~~d----g~i~iwd----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~i~-----~~~~spdg~~l~s--~-~d  361 (408)
                      ...    ..|.+||    +.+++..    ..+    .++            ...+.     .+.|+|||+.|+.  + .+
T Consensus       271 ~~~~~~~~~l~~~d~~~~~~~g~~~----~~~~~~~~~~------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~  334 (719)
T 1z68_A          271 LKRVQNVSVLSICDFREDWQTWDCP----KTQEHIEESR------------TGWAGGFFVSTPVFSYDAISYYKIFSDKD  334 (719)
T ss_dssp             EESSTTEEEEEEEEECSSSSSEECC----GGGEEEEECS------------SSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred             eccccCeEEEEEEcccCCCCCCceE----EEEecccccC------------CceEccccCCccEECCCCCeEEEEEEccC
Confidence            432    2488899    7766432    233    223            23444     7899999996553  3 23


Q ss_pred             --CeEEEEECCCCCCceeeeeecc
Q 015363          362 --MTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       362 --~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                        ..|.+||+.. ++ .+.+..+.
T Consensus       335 g~~~l~~~~~~~-~~-~~~lt~~~  356 (719)
T 1z68_A          335 GYKHIHYIKDTV-EN-AIQITSGK  356 (719)
T ss_dssp             SCEEEEEESSCS-TT-CEECSCSS
T ss_pred             CceEEEEEECCC-Cc-eEecccCc
Confidence              4677778765 33 44554443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.80  E-value=3.7e-18  Score=172.09  Aligned_cols=242  Identities=11%  Similarity=0.036  Sum_probs=166.1

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      ..+.+++|+|||++|+++ .++.|.+|+......                        ..+.++... .......+...+
T Consensus       245 ~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l------------------------~~l~~~~~~-~~~~~~~~~~~v  298 (1045)
T 1k32_A          245 TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI------------------------EKIEIGDLE-SPEDRIISIPSK  298 (1045)
T ss_dssp             CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE------------------------EECCCCCCC-BCCSEEEECGGG
T ss_pred             CCcceeeEcCCCCEEEEE-eCCEEEEecCCceEe------------------------eeeccCccc-cccccccccccc
Confidence            356788999999999988 588999999843221                        111111000 000000112568


Q ss_pred             eEEEEe-ecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCC-CeEeecCCceeeEEccCCCeeecccccc
Q 015363          116 NKIRWC-QSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG-PIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       116 ~~v~~~-p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      .+++|+ |+  |+++++++ ++.|.+|++.+++..... .+        .+ .+.       .+.|+ +|+.+       
T Consensus       299 ~~~~~S~pd--G~~la~~~-~~~i~~~~~~~~~~~~~~-~~--------~~~~~~-------~~~~s-dg~~l-------  351 (1045)
T 1k32_A          299 FAEDFSPLD--GDLIAFVS-RGQAFIQDVSGTYVLKVP-EP--------LRIRYV-------RRGGD-TKVAF-------  351 (1045)
T ss_dssp             GEEEEEECG--GGCEEEEE-TTEEEEECTTSSBEEECS-CC--------SCEEEE-------EECSS-SEEEE-------
T ss_pred             ceeeecCCC--CCEEEEEE-cCEEEEEcCCCCceEEcc-CC--------CcceEE-------eeeEc-CCCeE-------
Confidence            999997 66  88888887 889999999887754421 11        11 222       57888 88876       


Q ss_pred             cCccccCCCCCceee-eceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          194 SNDSSFPPGGVSSLR-LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                           +.++.+..+. +|+ +...       ....+ ..|...+..++|+|+|+.|+++ .++.|++||+.+ +....+ 
T Consensus       352 -----~~~s~~~~l~~~~d-~~~~-------~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~-  415 (1045)
T 1k32_A          352 -----IHGTREGDFLGIYD-YRTG-------KAEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVI-  415 (1045)
T ss_dssp             -----EEEETTEEEEEEEE-TTTC-------CEEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEE-
T ss_pred             -----EEEECCCceEEEEE-CCCC-------CceEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEEe-
Confidence                 5555566666 767 3221       11222 3667789999999999999998 899999999984 444333 


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC----------eEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG----------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                            ...|...+.+++|+|+| ++|++++.++          .|++||+.+++.     ..+..+            .
T Consensus       416 ------~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-----~~l~~~------------~  471 (1045)
T 1k32_A          416 ------ERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-----FAATTE------------N  471 (1045)
T ss_dssp             ------EECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-----EECSCS------------S
T ss_pred             ------ccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCcE-----EEeeCC------------C
Confidence                  34577888999999999 8888777644          999999998752     334444            3


Q ss_pred             ceeEEEEEccCCCEEEEeC-CCeEEEEECC
Q 015363          342 ASISDIKFARNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~s~~-d~~v~~wd~~  370 (408)
                      ..+..++|+|||++|+.++ ++...+|+..
T Consensus       472 ~~~~~~~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          472 SHDYAPAFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             SBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             cccCCceEcCCCCEEEEEecccCCcCcchh
Confidence            5678899999999999875 4777777754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=1.4e-17  Score=148.06  Aligned_cols=257  Identities=11%  Similarity=0.012  Sum_probs=156.9

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeC-CCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERT-DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ..+..++|+|+|++|++++.+ .|.+|++. +++..                     .......+             ..
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~---------------------~~~~~~~~-------------g~   84 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV---------------------HEASHPIG-------------GH   84 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE---------------------EEEEEECC-------------SS
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE---------------------EeeEeecC-------------CC
Confidence            468899999999999999888 99999986 44310                     00111111             12


Q ss_pred             eeEEEEeecCCCcE--EEEEe-------------CCCeEEEEEcC-CCcEEEEeccCCCCcccCCCCCeEeecCCceeeE
Q 015363          115 INKIRWCQSANSAL--YLLST-------------NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS  178 (408)
Q Consensus       115 v~~v~~~p~~~~~~--l~~~~-------------~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (408)
                      +.+++|+|  +|++  ++++.             .++++.+|++. .++...........    ....+       ..++
T Consensus        85 ~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~----~~~~~-------~~~~  151 (365)
T 1jof_A           85 PRANDADT--NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ----ENTGI-------HGMV  151 (365)
T ss_dssp             GGGGCTTS--CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC----TTCCE-------EEEE
T ss_pred             CccEEECC--CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC----CCCcc-------eEEE
Confidence            45578854  4874  44443             68999999997 45544332210000    01112       2689


Q ss_pred             EccCCCeeecccccccCccccCC-CCCceeeeceeee-ccccccccccceeec-cccccceEEEEeCCCCCEEEEe--cC
Q 015363          179 YMANGGCGERNFGCASNDSSFPP-GGVSSLRLPVVVT-SQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA--DD  253 (408)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~--~d  253 (408)
                      |+|+|+.+            +++ ..++.|.+|+ +. ..+..    ....+. ..|...++.++|+|+|++++++  .+
T Consensus       152 ~spdG~~l------------~~~~~~~~~v~~~~-~~~~g~~~----~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~  214 (365)
T 1jof_A          152 FDPTETYL------------YSADLTANKLWTHR-KLASGEVE----LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG  214 (365)
T ss_dssp             ECTTSSEE------------EEEETTTTEEEEEE-ECTTSCEE----EEEEEECSSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             ECCCCCEE------------EEEcCCCCEEEEEE-ECCCCCEE----EeeeEecCCCCCCCCEeEECCCCCEEEEEECCC
Confidence            99999977            443 3467899999 54 21111    111110 1235668999999999988776  57


Q ss_pred             CeEEEEeCCC-CCcee---eEeecCCCcccCCcC------CeEEEE-EcCCCCceEEEEeCC-C-----eEEEEEcC-CC
Q 015363          254 LRINLWNLEI-SNQSF---NIVDVKPANMEDLTE------VITSAE-FHPTHCNMLAYSSSK-G-----SIRLIDMR-QS  315 (408)
Q Consensus       254 ~~i~iwd~~~-~~~~~---~~~~~~~~~~~~~~~------~v~~~~-~~p~~~~~l~s~~~d-g-----~i~iwd~~-~~  315 (408)
                      +.|.+|+++. .+...   ..+...+..+.+|..      .+..++ |+|+| ++|+++..+ .     .|.+|++. ++
T Consensus       215 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g  293 (365)
T 1jof_A          215 NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCG  293 (365)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred             CeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCC
Confidence            8999998763 22221   122211111223332      578999 99999 777665542 3     89999996 44


Q ss_pred             ceecccccccccccCCCCccccccccceeEEEEEcc---CCCEEEEeC-C-CeEEEEECCC
Q 015363          316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRD-Y-MTLKLWDINM  371 (408)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp---dg~~l~s~~-d-~~v~~wd~~~  371 (408)
                      +.. ........+            ...+..++|+|   ||++|++++ + +.|.+|+++.
T Consensus       294 ~~~-~~~~~~~~~------------~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          294 SIE-KQLFLSPTP------------TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CEE-EEEEEEECS------------SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CEE-EeeeeeecC------------CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            321 000011111            12456789999   899999884 4 8999999975

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=6.9e-16  Score=132.24  Aligned_cols=263  Identities=14%  Similarity=0.167  Sum_probs=174.6

Q ss_pred             cCcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccc
Q 015363           12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR   91 (408)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~   91 (408)
                      .....|.+...|+..  +...++-..+.+++++++|+++++...++.|.+|+.+...                       
T Consensus         8 ~~~~~~~~~~~~g~~--g~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~-----------------------   62 (286)
T 1q7f_A            8 IKRQRMIYHCKFGEF--GVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF-----------------------   62 (286)
T ss_dssp             CCCEEECEEEEECCB--SSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE-----------------------
T ss_pred             cccceeEEEEeccCC--CCCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE-----------------------
Confidence            445567777777754  3344667789999999999988888889999999976321                       


Q ss_pred             eeeeec------cCCcccccccccccccceeEEEEeecCCCcEEEEEeC-CCeEEEEEcCCCcEEEEeccCCCCcccCCC
Q 015363           92 YKTEFQ------SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGN  164 (408)
Q Consensus        92 ~~~~~~------~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  164 (408)
                       ...+.      ++.            ..+.++++.+ +++.++++... ++.|.+|| .+++....+....       .
T Consensus        63 -~~~~~~~~~~~~~~------------~~p~~i~~~~-~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~-------~  120 (286)
T 1q7f_A           63 -KFQFGECGKRDSQL------------LYPNRVAVVR-NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATI-------L  120 (286)
T ss_dssp             -EEEECCBSSSTTCB------------SSEEEEEEET-TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTT-------C
T ss_pred             -EEEecccCCCcccc------------cCceEEEEEc-CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCcc-------C
Confidence             11121      122            4478888842 34655555533 89999999 4555544432211       0


Q ss_pred             CCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeec-cccccceEEEEeCC
Q 015363          165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNS  243 (408)
Q Consensus       165 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~  243 (408)
                      ..+       ..+++.++|+.+            ++...++.|.+|+ ...       .....+. ..+...+..++++|
T Consensus       121 ~~~-------~~i~~~~~g~l~------------v~~~~~~~i~~~~-~~g-------~~~~~~~~~~~~~~p~~i~~~~  173 (286)
T 1q7f_A          121 QHP-------RGVTVDNKGRII------------VVECKVMRVIIFD-QNG-------NVLHKFGCSKHLEFPNGVVVND  173 (286)
T ss_dssp             SCE-------EEEEECTTSCEE------------EEETTTTEEEEEC-TTS-------CEEEEEECTTTCSSEEEEEECS
T ss_pred             CCc-------eEEEEeCCCCEE------------EEECCCCEEEEEc-CCC-------CEEEEeCCCCccCCcEEEEECC
Confidence            112       268888998865            6666778898888 321       1112211 13345688999999


Q ss_pred             CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC-eEEEEEcCCCceeccc
Q 015363          244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-SIRLIDMRQSALCDTH  321 (408)
Q Consensus       244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~  321 (408)
                      +++++++. .++.|++||.. +. .+..+.     ..++...+..++++|+| +++++...++ .|.+||.. ++.+   
T Consensus       174 ~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~-----~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~-g~~~---  241 (286)
T 1q7f_A          174 KQEIFISDNRAHCVKVFNYE-GQ-YLRQIG-----GEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD-GQLI---  241 (286)
T ss_dssp             SSEEEEEEGGGTEEEEEETT-CC-EEEEES-----CTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT-SCEE---
T ss_pred             CCCEEEEECCCCEEEEEcCC-CC-EEEEEc-----cCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCC-CCEE---
Confidence            99988877 78999999986 33 332211     12233568899999999 8888887776 99999964 4332   


Q ss_pred             ccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363          322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~  371 (408)
                       ..+..+..          ...+.+++++|+|+++++..++.|++|++..
T Consensus       242 -~~~~~~~~----------~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          242 -SALESKVK----------HAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             -EEEEESSC----------CSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             -EEEcccCC----------CCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence             33333311          1347789999999988886679999999865

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.77  E-value=3.5e-16  Score=138.04  Aligned_cols=233  Identities=9%  Similarity=0.099  Sum_probs=138.9

Q ss_pred             cceeEEEEeecCCCcEEEEEeC---CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALYLLSTN---DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..+..++|+|  +|+ +++++.   ++.|.+|++.+++.........             ....+..++++|+|+.+   
T Consensus        40 ~~p~~~a~sp--dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-------------~~~~p~~~a~spdg~~l---  100 (347)
T 3hfq_A           40 QNPTYLALSA--KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-------------PGTPPAYVAVDEARQLV---  100 (347)
T ss_dssp             SCCCCEEECT--TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE-------------ESCCCSEEEEETTTTEE---
T ss_pred             CCcceEEEcc--CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec-------------CCCCCEEEEECCCCCEE---
Confidence            4478899965  477 555543   6899999998776443322110             01122268999999987   


Q ss_pred             cccccCccccCCC-CCceeeeceeeeccccccccccceeec-c-------ccccceEEEEeCCCCCEEEEe-cCCeEEEE
Q 015363          190 FGCASNDSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYA-H-------AHDYHINSISNNSDGETFISA-DDLRINLW  259 (408)
Q Consensus       190 ~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~v~~i~~~~~~~~l~~~-~d~~i~iw  259 (408)
                               ++++ .++.|.+|+ +......   .....+. .       .+...+.+++|+|+++++++. .++.|.+|
T Consensus       101 ---------~~~~~~~~~v~v~~-~~~~g~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~  167 (347)
T 3hfq_A          101 ---------YSANYHKGTAEVMK-IAADGAL---TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVY  167 (347)
T ss_dssp             ---------EEEETTTTEEEEEE-ECTTSCE---EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             ---------EEEeCCCCEEEEEE-eCCCCCe---eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEE
Confidence                     5544 789999999 5321110   0111110 1       122358899999999966666 78999999


Q ss_pred             eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCc-eEEEEeCCCeEEEEEcCC--CceecccccccccccCCCCccc
Q 015363          260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSF  336 (408)
Q Consensus       260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~  336 (408)
                      ++...+.......+    .......+..++|+|+| + ++++...++.|.+|++..  ++..  .+..+.....     .
T Consensus       168 ~~~~~g~~~~~~~~----~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~~-----~  235 (347)
T 3hfq_A          168 NVSDAGQLSEQSVL----TMEAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIPA-----D  235 (347)
T ss_dssp             EECTTSCEEEEEEE----ECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSCT-----T
T ss_pred             EECCCCcEEEeeeE----EcCCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecCC-----C
Confidence            99843333222111    01122356789999999 6 455566789999999885  3321  1111111100     0


Q ss_pred             cccccceeEEEEEccCCCEEEEe-C-CCeEEEEECCCCC--CceeeeeecccccceEE
Q 015363          337 FTEIIASISDIKFARNGRHILSR-D-YMTLKLWDINMDS--GPVATFQVHEHLRPKVM  390 (408)
Q Consensus       337 ~~~h~~~i~~~~~spdg~~l~s~-~-d~~v~~wd~~~~~--~~~~~~~~~~~~~~~~~  390 (408)
                      +. ....+..++|+|||++|+++ . ++.|.+|+++..+  +.+..+..+......+.
T Consensus       236 ~~-~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~  292 (347)
T 3hfq_A          236 YT-AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFD  292 (347)
T ss_dssp             CC-SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEE
T ss_pred             CC-CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEE
Confidence            00 01458899999999988554 3 6999999997423  33444444433333343

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.76  E-value=8.7e-17  Score=156.27  Aligned_cols=259  Identities=10%  Similarity=0.076  Sum_probs=156.0

Q ss_pred             ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccccee
Q 015363           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  116 (408)
                      ...+++|+|||++|+++  ||.|++||+.+++.                       ...+.+|....       ......
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-----------------------~~~~~~~~~~~-------~~~~~~   65 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS-----------------------SVFLENSTFDE-------FGHSIN   65 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE-----------------------EEEECTTTTTT-------CCSCCC
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCce-----------------------EEEEechhhhh-------hccccc
Confidence            45689999999999886  89999999988763                       23345554110       001234


Q ss_pred             EEEEeecCCCcEEEEEeCC---------CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          117 KIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                      ++.|+|  ||++|++++.+         +.+.+||+.+++...+...         .+.+.       ...|+|||+.| 
T Consensus        66 ~~~~Sp--dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~---------~~~~~-------~~~~SPdG~~l-  126 (740)
T 4a5s_A           66 DYSISP--DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERI---------PNNTQ-------WVTWSPVGHKL-  126 (740)
T ss_dssp             EEEECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---------CTTEE-------EEEECSSTTCE-
T ss_pred             ceEECC--CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccC---------CCcce-------eeEECCCCCEE-
Confidence            578865  48899998876         5667999999876542221         12233       68999999987 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccc---cccceeeccccc---------cceEEEEeCCCCCEEEEe--cC
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLV---AGCRRIYAHAHD---------YHINSISNNSDGETFISA--DD  253 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~---------~~v~~i~~~~~~~~l~~~--~d  253 (408)
                                 +.+ .++.|.+|+ +...+....   +..... ..++.         .....+.|+|||+.||.+  ++
T Consensus       127 -----------a~~-~~~~i~~~~-~~~~~~~~lt~~g~~~~~-~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~  192 (740)
T 4a5s_A          127 -----------AYV-WNNDIYVKI-EPNLPSYRITWTGKEDII-YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (740)
T ss_dssp             -----------EEE-ETTEEEEES-STTSCCEECCSCCBTTTE-EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             -----------EEE-ECCeEEEEE-CCCCceEEEcCCCCccce-ecCcccccccchhcCCCcceEECCCCCEEEEEEEcc
Confidence                       333 467888888 433221111   000000 01111         112358999999999876  33


Q ss_pred             C-----------------------------------eEEEEeCCC---CC--ceeeEeecCCCcccCCcCCeEEEEEcCC
Q 015363          254 L-----------------------------------RINLWNLEI---SN--QSFNIVDVKPANMEDLTEVITSAEFHPT  293 (408)
Q Consensus       254 ~-----------------------------------~i~iwd~~~---~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~  293 (408)
                      .                                   .|++||+.+   +.  ....+.  .+..+.+|...+..++|+||
T Consensus       193 ~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~wspd  270 (740)
T 4a5s_A          193 TEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT--APASMLIGDHYLCDVTWATQ  270 (740)
T ss_dssp             TTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC--CCHHHHTSCEEEEEEEEEET
T ss_pred             cCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec--CCccCCCCCeEEEEEEEeCC
Confidence            3                                   466677764   32  222210  00001136777999999999


Q ss_pred             CCceEEEEeC----CCeEEEEEcCCCce---eccccccc--ccccCCCCcccccccccee-----EEEEEccCCCEEE-E
Q 015363          294 HCNMLAYSSS----KGSIRLIDMRQSAL---CDTHSKLF--EEQEAPGTRSFFTEIIASI-----SDIKFARNGRHIL-S  358 (408)
Q Consensus       294 ~~~~l~s~~~----dg~i~iwd~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~h~~~i-----~~~~~spdg~~l~-s  358 (408)
                      | ++++....    +..|.+||+.+++.   +. .+..+  +.+            ...|     ..+.|+|||+.|+ .
T Consensus       271 g-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~-~~~~l~~~~~------------~~~v~~~~~~~p~fspDG~~l~~~  336 (740)
T 4a5s_A          271 E-RISLQWLRRIQNYSVMDICDYDESSGRWNCL-VARQHIEMST------------TGWVGRFRPSEPHFTLDGNSFYKI  336 (740)
T ss_dssp             T-EEEEEEEESSTTEEEEEEEEEETTTTEEEEC-GGGCEEEECS------------SSCSSSSSCCCCEECTTSSEEEEE
T ss_pred             C-eEEEEEeCCCCCEEEEEEEECCCCcccccee-EEEEeeeccC------------CceEccCcCCCceEcCCCCEEEEE
Confidence            9 76665543    34799999998851   10 01111  222            2233     3678999999876 5


Q ss_pred             eC--C--CeEEEEECCCCCCcee
Q 015363          359 RD--Y--MTLKLWDINMDSGPVA  377 (408)
Q Consensus       359 ~~--d--~~v~~wd~~~~~~~~~  377 (408)
                      .+  +  ..|++||+.. ++..+
T Consensus       337 ~s~~~G~~~l~~~~~~~-~~~~~  358 (740)
T 4a5s_A          337 ISNEEGYRHICYFQIDK-KDCTF  358 (740)
T ss_dssp             EECTTSCEEEEEEETTC-SSCEE
T ss_pred             EEcCCCceEEEEEECCC-CceEe
Confidence            42  2  5788888875 44443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=4.3e-16  Score=139.67  Aligned_cols=261  Identities=11%  Similarity=0.036  Sum_probs=156.3

Q ss_pred             EEECCCCCeEEEeec-CCe--EEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeE
Q 015363           41 IEFDKSGDHLATGDR-GGR--VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK  117 (408)
Q Consensus        41 ~~~s~~~~~l~sg~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  117 (408)
                      .+|+|||++||.++. +|.  |.+||+.+++.                       .....++.            ..+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-----------------------~~lt~~~~------------~~~~~   85 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-----------------------TQLTEGRG------------DNTFG   85 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-----------------------EECCCSSC------------BCSSS
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-----------------------EEeeeCCC------------CCccc
Confidence            789999999998887 674  77778776642                       12223333            33556


Q ss_pred             EEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC--
Q 015363          118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN--  195 (408)
Q Consensus       118 v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  195 (408)
                      +.|+|+  |+.|+.++.++.|++||+.+++...+...+...        +..     .....+++++.+.........  
T Consensus        86 ~~~spd--g~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~--------~~~-----~~~~~~~dg~~l~~~~~~~~~~~  150 (388)
T 3pe7_A           86 GFLSPD--DDALFYVKDGRNLMRVDLATLEENVVYQVPAEW--------VGY-----GTWVANSDCTKLVGIEIRREDWV  150 (388)
T ss_dssp             CEECTT--SSEEEEEETTTEEEEEETTTCCEEEEEECCTTE--------EEE-----EEEEECTTSSEEEEEEEEGGGCC
T ss_pred             eEEcCC--CCEEEEEeCCCeEEEEECCCCcceeeeechhhc--------ccc-----cceeECCCCCeeccccccCcccc
Confidence            789654  889999999999999999999877665543221        100     012346777766322110000  


Q ss_pred             ---c-----cccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-c------CCeEEEE
Q 015363          196 ---D-----SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-D------DLRINLW  259 (408)
Q Consensus       196 ---~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~------d~~i~iw  259 (408)
                         .     -.+....+..|.+|| +...+       .+.+ ..+...+..++|+| +|+.|+.. .      ...|.++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~~d-~~~g~-------~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~  221 (388)
T 3pe7_A          151 PLTDWKKFHEFYFTKPCCRLMRVD-LKTGE-------STVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLI  221 (388)
T ss_dssp             CCCSHHHHHHHGGGCCCEEEEEEE-TTTCC-------EEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEE
T ss_pred             cccccchhhhhhccCCcceEEEEE-CCCCc-------eEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEE
Confidence               0     012344567788888 43321       1121 34456688999999 99988865 3      3377788


Q ss_pred             eCCCCCceeeEeecCCCcccCCc--CCeEEEEEcCCCCceEEEEeC-CC----eEEEEEcCCCceecccccccccccCCC
Q 015363          260 NLEISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSS-KG----SIRLIDMRQSALCDTHSKLFEEQEAPG  332 (408)
Q Consensus       260 d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~  332 (408)
                      |.. +.....        +..+.  ..+..++|+|+| +.|+..+. ++    .|++||+.+++..  .+..+.++.   
T Consensus       222 d~~-~~~~~~--------l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~~~---  286 (388)
T 3pe7_A          222 NED-GTNMRK--------VKTHAEGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYSADPETLENR--QLTSMPACS---  286 (388)
T ss_dssp             ETT-SCCCEE--------SCCCCTTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEEECTTTCCEE--EEEEECCEE---
T ss_pred             eCC-CCceEE--------eeeCCCCcccccceECCCC-CEEEEEecCCCCCcceEEEEecCCCceE--EEEcCCCce---
Confidence            876 333222        22233  357789999999 65654443 22    3999999988642  112222210   


Q ss_pred             Ccccccccc-ceeEEEEEccCCCEEEEe----------CCCeEEEEECCCCCCceeeeeeccc
Q 015363          333 TRSFFTEII-ASISDIKFARNGRHILSR----------DYMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       333 ~~~~~~~h~-~~i~~~~~spdg~~l~s~----------~d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                             |. .....+.|+|||+.|+..          .+..|++||+.+ + .+..+..+..
T Consensus       287 -------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~  340 (388)
T 3pe7_A          287 -------HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN-G-TQHRVARHDT  340 (388)
T ss_dssp             -------EEEECTTSSEEEEEECCC------------CCCCEEEEEETTT-T-EEEEEEECCC
T ss_pred             -------eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC-C-ceEEeccccC
Confidence                   00 001123799999988753          247999999976 3 4456666654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.74  E-value=8e-15  Score=130.09  Aligned_cols=216  Identities=8%  Similarity=0.043  Sum_probs=129.6

Q ss_pred             cceeEEEEeecCCCcEEEEEeCC----CeEEEEEcCC--CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          113 EKINKIRWCQSANSALYLLSTND----KTIKLWKVQE--KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d----~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                      ..+..++|+|  +|++|++++.+    +.|.+|++..  ++...........             ..+..+++  +++.+
T Consensus        50 ~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~-------------~~p~~~~~--dg~~l  112 (361)
T 3scy_A           50 ANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG-------------ADPCYLTT--NGKNI  112 (361)
T ss_dssp             SCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS-------------SCEEEEEE--CSSEE
T ss_pred             CCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC-------------CCcEEEEE--CCCEE
Confidence            5578899965  48889888875    7999999875  5544333221110             01113444  77765


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceee-------ccccccceEEEEeCCCCCEEEEe--cCCeEE
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-------AHAHDYHINSISNNSDGETFISA--DDLRIN  257 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~  257 (408)
                                 +++...++.|.+|+ +...............       ...+...+.+++|+|+|++++++  .++.|.
T Consensus       113 -----------~~~~~~~~~v~~~~-~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~  180 (361)
T 3scy_A          113 -----------VTANYSGGSITVFP-IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH  180 (361)
T ss_dssp             -----------EEEETTTTEEEEEE-BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             -----------EEEECCCCEEEEEE-eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence                       24445688999999 5432111100000000       01123346889999999976655  689999


Q ss_pred             EEeCCCCCc----e-eeEe-ecCCCcccCCcCCeEEEEEcCCCCceEEEEe-CCCeEEEEEcCCCceecccccccccccC
Q 015363          258 LWNLEISNQ----S-FNIV-DVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEA  330 (408)
Q Consensus       258 iwd~~~~~~----~-~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~  330 (408)
                      +|++.....    . +... ..... ...+...+..++|+|+| +++++++ .++.|.+||+.++...  .+..+...  
T Consensus       181 v~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~--~~~~~~~~--  254 (361)
T 3scy_A          181 KFNINPNANADNKEKFLTKGTPEAF-KVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLD--EIQTVAAD--  254 (361)
T ss_dssp             EEEECTTCCTTTCCCCEEEEEEEEE-ECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEE--EEEEEESC--
T ss_pred             EEEEcCCCCcccccceeecccccce-ecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceE--EeEEEecC--
Confidence            999874432    1 1100 00000 12234557899999999 7666666 6899999999876431  11111111  


Q ss_pred             CCCccccccccceeEEEEEccCCCEEEEe--C-CCeEEEEECC
Q 015363          331 PGTRSFFTEIIASISDIKFARNGRHILSR--D-YMTLKLWDIN  370 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~-d~~v~~wd~~  370 (408)
                             ..+...+..++|+|||++|+++  . ++.|.+|+++
T Consensus       255 -------~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          255 -------TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             -------SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             -------CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence                   1112346899999999998665  3 4899999996

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.72  E-value=1.8e-14  Score=128.02  Aligned_cols=220  Identities=10%  Similarity=-0.010  Sum_probs=135.3

Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcC-CCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      .+..++|+|  +|++|++++.+ .|.+|++. +++..........       +       .+..++++|+|+.+.     
T Consensus        41 ~~~~~a~sp--dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-------g-------~~~~~~~spdg~~l~-----   98 (365)
T 1jof_A           41 PISWMTFDH--ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-------G-------HPRANDADTNTRAIF-----   98 (365)
T ss_dssp             CCSEEEECT--TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-------S-------SGGGGCTTSCCEEEE-----
T ss_pred             CCcEEEECC--CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-------C-------CCccEEECCCCCEEE-----
Confidence            478899965  48889888888 99999997 7765543322100       0       112578889998420     


Q ss_pred             ccCccccCCC-------------CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEE
Q 015363          193 ASNDSSFPPG-------------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRIN  257 (408)
Q Consensus       193 ~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~  257 (408)
                           ++++.             .++.+.+|+ +..... . ......+...+...+.+++|+|+|++++++  .++.|.
T Consensus        99 -----~~~~~~~~~~~~~~~~~~~~g~v~v~~-~~~~g~-~-~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~  170 (365)
T 1jof_A           99 -----LLAAKQPPYAVYANPFYKFAGYGNVFS-VSETGK-L-EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLW  170 (365)
T ss_dssp             -----EEECSSTTCCEEEEEESSSCCEEEEEE-ECTTCC-E-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             -----EEEecCCcceeccceeecCCceEEEEc-cCCCCc-C-cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEE
Confidence                 13332             688899999 542111 0 011111101244678999999999988876  578999


Q ss_pred             EEeCC-CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CCeEEEEEcC--CCceec--ccccccccccCC
Q 015363          258 LWNLE-ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR--QSALCD--THSKLFEEQEAP  331 (408)
Q Consensus       258 iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~--~~~~~~--~~~~~~~~~~~~  331 (408)
                      +||+. ++. ......+   ....|...+..++|+|+| +++++++. ++.|.+|++.  +++...  ..+..+...   
T Consensus       171 ~~~~~~~g~-~~~~~~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~---  242 (365)
T 1jof_A          171 THRKLASGE-VELVGSV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG---  242 (365)
T ss_dssp             EEEECTTSC-EEEEEEE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT---
T ss_pred             EEEECCCCC-EEEeeeE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC---
Confidence            99997 333 2111111   012235568999999999 77776664 7899999875  443210  001111111   


Q ss_pred             CCccccccccc------eeEEEE-EccCCCEEEEeC--CC-----eEEEEECCCCCCce
Q 015363          332 GTRSFFTEIIA------SISDIK-FARNGRHILSRD--YM-----TLKLWDINMDSGPV  376 (408)
Q Consensus       332 ~~~~~~~~h~~------~i~~~~-~spdg~~l~s~~--d~-----~v~~wd~~~~~~~~  376 (408)
                           +.+|..      .+..++ |+|||++|++++  ++     .|.+|+++..++..
T Consensus       243 -----~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          243 -----IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             -----CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             -----cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence                 112222      588999 999999988763  23     89999997335544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=6e-15  Score=129.02  Aligned_cols=253  Identities=7%  Similarity=0.067  Sum_probs=161.2

Q ss_pred             ccceEEEEECCCCCeEEEeecC------------------------CeEEEEEeCCCCCCCCcccccccccccccCCCcc
Q 015363           35 VDIISAIEFDKSGDHLATGDRG------------------------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF   90 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~   90 (408)
                      -+.|.+|+++|+|+++++...+                        ++|.+||..+++.                     
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------   81 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---------------------   81 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---------------------
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---------------------
Confidence            4668999999999999888777                        3577777665532                     


Q ss_pred             ceeeeec-cCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCCCCeE
Q 015363           91 RYKTEFQ-SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIF  168 (408)
Q Consensus        91 ~~~~~~~-~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~  168 (408)
                        ...+. ++.            .....+++.  ++|.++++...++.|++|+..... ....+........  ..+   
T Consensus        82 --~~~~~~~~~------------~~p~gia~d--~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~--~~~---  140 (329)
T 3fvz_A           82 --LQSSGKNLF------------YLPHGLSID--TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS--DQN---  140 (329)
T ss_dssp             --EEEECTTTC------------SSEEEEEEC--TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCC--STT---
T ss_pred             --EeccCCCcc------------CCceEEEEC--CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCC--Ccc---
Confidence              12221 221            458899995  558888888889999999987552 2332221110000  000   


Q ss_pred             eecCCceeeEEcc-CCCeeecccccccCccccCCC-CCceeeeceeeeccccccccccceeec---------cccccceE
Q 015363          169 GSHVSAIPKSYMA-NGGCGERNFGCASNDSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYA---------HAHDYHIN  237 (408)
Q Consensus       169 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~  237 (408)
                       .-..+..++++| ++..+            ++.+ .++.|++|+ ...       .....+.         .++-....
T Consensus       141 -~~~~P~~ia~~~~~g~ly------------v~d~~~~~~I~~~~-~~g-------~~~~~~~~~g~~~~~~~~~~~~p~  199 (329)
T 3fvz_A          141 -HFCQPTDVAVEPSTGAVF------------VSDGYCNSRIVQFS-PSG-------KFVTQWGEESSGSSPRPGQFSVPH  199 (329)
T ss_dssp             -CCSSEEEEEECTTTCCEE------------EEECSSCCEEEEEC-TTS-------CEEEEECEECCSSSCCTTEESCEE
T ss_pred             -ccCCCcEEEEeCCCCeEE------------EEeCCCCCeEEEEc-CCC-------CEEEEeccCCCCCCCCCcccCCCc
Confidence             001234789999 67664            5554 688888887 221       1111110         11224478


Q ss_pred             EEEeCCC-CCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe-------CCCeEE
Q 015363          238 SISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-------SKGSIR  308 (408)
Q Consensus       238 ~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-------~dg~i~  308 (408)
                      .++++|+ +.++++. .+++|++||..+ ++....+.     ...+...+..++|+| + ..+++.+       .+..|+
T Consensus       200 gia~d~~~g~l~v~d~~~~~I~~~~~~~-G~~~~~~~-----~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~  271 (329)
T 3fvz_A          200 SLALVPHLDQLCVADRENGRIQCFKTDT-KEFVREIK-----HASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGF  271 (329)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEEEC-----CTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEE
T ss_pred             EEEEECCCCEEEEEECCCCEEEEEECCC-CcEEEEEe-----ccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEE
Confidence            9999999 6666666 799999999983 44444322     234566788999999 4 4444433       345899


Q ss_pred             EEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      +||+.+++.+    ..+...         .++...+..++++|+|.++++.. ++.|++|++..
T Consensus       272 ~~~~~~g~~~----~~~~~~---------~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          272 VMNFSSGEII----DVFKPV---------RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEETTTCCEE----EEECCS---------SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEEcCCCeEE----EEEcCC---------CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            9999988654    333211         11235689999999997777764 59999999864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.72  E-value=2.3e-16  Score=153.16  Aligned_cols=262  Identities=10%  Similarity=-0.001  Sum_probs=154.0

Q ss_pred             eEEEEECCCCCeEEEeec---------CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           38 ISAIEFDKSGDHLATGDR---------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      |.+++|||||++||+++.         ++.|++||+.+++..                     ....+   .        
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~---------------------~~~~l---~--------  109 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV---------------------RGNEL---P--------  109 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---------------------CSSCC---C--------
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc---------------------cceec---C--------
Confidence            899999999999999876         789999999877530                     00011   1        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeec----------CCceeeE
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH----------VSAIPKS  178 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------~~~~~~~  178 (408)
                          ..+..++|+|+  |+.|+++. |+.|++|++.+++...+......       ..++...          .....++
T Consensus       110 ----~~~~~~~~SPD--G~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~-------~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A          110 ----RPIQYLCWSPV--GSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE-------NKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             ----SSBCCEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCCCCBT-------TTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             ----cccccceECCC--CCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc-------CCeEcccccceeeeecccCcccEE
Confidence                34888999765  88888875 78999999998876543321110       0011000          0112689


Q ss_pred             EccCCCeeeccccccc--Ccc------------------ccCC--CCCceeeeceeeeccccc---cccccceeeccccc
Q 015363          179 YMANGGCGERNFGCAS--NDS------------------SFPP--GGVSSLRLPVVVTSQETN---LVAGCRRIYAHAHD  233 (408)
Q Consensus       179 ~~~~~~~l~~~~~~~~--~~~------------------~~~~--~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~  233 (408)
                      |+|||+.|........  ..+                  -..|  .....|++|| +......   ....+ .. +..|.
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d-~~~~~~~~~~~~~~~-~~-~~~~~  252 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID-TTYPAYVGPQEVPVP-AM-IASSD  252 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE-SSCHHHHCCEECCCC-HH-HHTSC
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE-CCCCCccceeEccCC-cc-CCCCc
Confidence            9999998844321100  000                  0001  1123677888 4332210   00000 11 24577


Q ss_pred             cceEEEEeCCCCCEEEEe-c--C--CeEEEEe----CCCCCceeeEeecCCCcccCCcCCeE-----EEEEcCCCCceEE
Q 015363          234 YHINSISNNSDGETFISA-D--D--LRINLWN----LEISNQSFNIVDVKPANMEDLTEVIT-----SAEFHPTHCNMLA  299 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~--d--~~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~p~~~~~l~  299 (408)
                      ..+..++|+||++++++. .  +  ..|.+||    ..+ ++...+..   .....|...+.     .+.|+|+| +.|+
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~---~~~~~~~~~~~~~~~~~~~~spdg-~~l~  327 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQE---HIEESRTGWAGGFFVSTPVFSYDA-ISYY  327 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGE---EEEECSSSCSSSSSCCCCEECTTS-SCEE
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEe---cccccCCceEccccCCccEECCCC-CeEE
Confidence            889999999998877764 2  2  3588889    663 33322210   00024555555     78999999 6444


Q ss_pred             E--EeCCC--eEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CC-----CeEEEEEC
Q 015363          300 Y--SSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY-----MTLKLWDI  369 (408)
Q Consensus       300 s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d-----~~v~~wd~  369 (408)
                      .  ...++  .|.+||+.+++.     ..+..+            ...+..+.++ +++.|+.. .+     +.+++|.+
T Consensus       328 ~~~~~~~g~~~l~~~~~~~~~~-----~~lt~~------------~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~  389 (719)
T 1z68_A          328 KIFSDKDGYKHIHYIKDTVENA-----IQITSG------------KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI  389 (719)
T ss_dssp             EEEECTTSCEEEEEESSCSTTC-----EECSCS------------SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             EEEEccCCceEEEEEECCCCce-----EecccC------------ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence            3  44455  577777766542     233322            2346777777 77766654 33     78899988


Q ss_pred             CC
Q 015363          370 NM  371 (408)
Q Consensus       370 ~~  371 (408)
                      ..
T Consensus       390 ~~  391 (719)
T 1z68_A          390 SI  391 (719)
T ss_dssp             EC
T ss_pred             eC
Confidence            65

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.71  E-value=1.4e-15  Score=146.16  Aligned_cols=282  Identities=10%  Similarity=0.036  Sum_probs=165.3

Q ss_pred             ceeeccceEEEEECCCCCeEEEe--ecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATG--DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ...|...|..++|++++.++++.  +.++...||....+..                       ...+..|.        
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~l~~~~--------   67 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-----------------------EESALPAP--------   67 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-----------------------EEESSCTT--------
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-----------------------cceeCCCC--------
Confidence            34688899999999887777776  5588999999643221                       12233333        


Q ss_pred             ccccccee---------EEEEeecCCCcE-EEEEeC-CCeEEEEEcC--C-CcEEEEeccCCCCcccCCCCCeEeecCCc
Q 015363          109 LEIEEKIN---------KIRWCQSANSAL-YLLSTN-DKTIKLWKVQ--E-KKVKKVFDWNVHPEKAAGNGPIFGSHVSA  174 (408)
Q Consensus       109 ~~~~~~v~---------~v~~~p~~~~~~-l~~~~~-d~~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  174 (408)
                          ..+.         ...|+.+|||+. |+.++. +..|.++++.  + ++...........    ....+.      
T Consensus        68 ----~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~----~~~~~~------  133 (662)
T 3azo_A           68 ----WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVG----GGLRWA------  133 (662)
T ss_dssp             ----CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCST----TCEEEE------
T ss_pred             ----ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCC----CCcccc------
Confidence                1233         556763356877 766553 5667777766  3 4433322211000    011122      


Q ss_pred             eeeEEccCCCeeecccccccCccccCCCCC----------ceeeeceeeeccccccccccceeecc-ccccceEEEEeCC
Q 015363          175 IPKSYMANGGCGERNFGCASNDSSFPPGGV----------SSLRLPVVVTSQETNLVAGCRRIYAH-AHDYHINSISNNS  243 (408)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~  243 (408)
                       .++|+|||+.+            +..+.+          ..|.+|+ +........ ...+.+ . .+...+..++|+|
T Consensus       134 -~~~~spDg~~l------------~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~~l-~~~~~~~~~~~~~Sp  197 (662)
T 3azo_A          134 -DPVLLPERGEV------------WCMAEEFTGEGPSDVRRFLAAVP-LDGSAAADR-SAVREL-SDDAHRFVTGPRLSP  197 (662)
T ss_dssp             -EEEEETTTTEE------------EEEEEEECSSSTTCEEEEEEEEE-TTSTTTTCG-GGSEES-SCSCSSEECCCEECT
T ss_pred             -CcEECCCCCEE------------EEEEecccCCCCCCceeEEEEEE-CCCCccccC-CceeEE-EecCCCcccCceECC
Confidence             68999999987            444433          5788887 432100000 111222 3 4446678899999


Q ss_pred             CCCEEEEe-cC--------CeEEEEeCCCCC---ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC--eEEE
Q 015363          244 DGETFISA-DD--------LRINLWNLEISN---QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRL  309 (408)
Q Consensus       244 ~~~~l~~~-~d--------~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg--~i~i  309 (408)
                      ||+.|+.+ .+        ..|++||+...+   ....+       ...+...+..+.|+|+| ++++++..++  .|.+
T Consensus       198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l-------~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~  269 (662)
T 3azo_A          198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL-------LGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHR  269 (662)
T ss_dssp             TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE-------EEETTBCEEEEEECTTS-CEEEEECTTSSCEEEE
T ss_pred             CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe-------CCCCCceEcceEECCCC-eEEEEECCCCCeEEEE
Confidence            99999876 33        379999998323   33322       23346778999999999 6888887788  6666


Q ss_pred             EEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceE
Q 015363          310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKV  389 (408)
Q Consensus       310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~  389 (408)
                      ||+.+++..    .....+...... .+   .-.+..++|+|+++++++++++.++||.++..+..++.+..|......+
T Consensus       270 ~~~~~~~~~----~l~~~~~~~~~p-~w---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  341 (662)
T 3azo_A          270 VDPATGAAT----QLCRREEEFAGP-LW---TPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAAT  341 (662)
T ss_dssp             ECTTTCCEE----ESSCCSSBSSCC-CC---STTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECCSSCCEEEEE
T ss_pred             EECCCCcee----ecccccccccCc-cc---cccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEecCCCCeEEEE
Confidence            776565432    122222100000 00   0114568999999999988448888885543334567777665544333

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.70  E-value=2.1e-15  Score=132.97  Aligned_cols=214  Identities=7%  Similarity=0.024  Sum_probs=138.2

Q ss_pred             EEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCcc
Q 015363          118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS  197 (408)
Q Consensus       118 v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (408)
                      ++++  +++.++++++.+++|.+||+.+++....+......              .+..++++|+|+.+           
T Consensus         5 ~~~~--~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--------------~~~~~~~s~dg~~~-----------   57 (349)
T 1jmx_B            5 PALK--AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF--------------GPGTAMMAPDNRTA-----------   57 (349)
T ss_dssp             CCCC--TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC--------------SSCEEEECTTSSEE-----------
T ss_pred             cccc--CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCC--------------CCceeEECCCCCEE-----------
Confidence            4453  45778899999999999999999877766543200              01268899999865           


Q ss_pred             ccCCCCCceeeeceeeeccccccccccceeecccc-----ccceEEEEeCCCCCEEEEe-cC------------CeEEEE
Q 015363          198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-----DYHINSISNNSDGETFISA-DD------------LRINLW  259 (408)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~l~~~-~d------------~~i~iw  259 (408)
                      +++...++.|.+|| +...+      ....+...+     ...+..++|+|+|++|+++ .+            +.|.+|
T Consensus        58 ~v~~~~~~~i~~~d-~~t~~------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~  130 (349)
T 1jmx_B           58 YVLNNHYGDIYGID-LDTCK------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVF  130 (349)
T ss_dssp             EEEETTTTEEEEEE-TTTTE------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             EEEeCCCCcEEEEe-CCCCc------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEE
Confidence            24556788999999 43221      111111111     2346789999999999987 44            999999


Q ss_pred             eCCCCCce--eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC--C----
Q 015363          260 NLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA--P----  331 (408)
Q Consensus       260 d~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~----  331 (408)
                      |+.+....  ...       .. +...+.+++|+|++ + +++++  +.|.+||+.+++..    ..+.....  +    
T Consensus       131 d~~~~~~~~~~~~-------~~-~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~  194 (349)
T 1jmx_B          131 STADGLEAKPVRT-------FP-MPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYT----VALPLRNWNRKGYSA  194 (349)
T ss_dssp             EGGGGGGBCCSEE-------EE-CCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEE----EEECSTTCCCTTBCC
T ss_pred             ECCCccccceeee-------cc-CCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCcee----ccccccccCCccccC
Confidence            99853221  111       11 23357889999999 6 44444  34999999988654    22211100  0    


Q ss_pred             ----------CCccc----------------------------------------cccccceeEEEEEcc-CCCEEEEeC
Q 015363          332 ----------GTRSF----------------------------------------FTEIIASISDIKFAR-NGRHILSRD  360 (408)
Q Consensus       332 ----------~~~~~----------------------------------------~~~h~~~i~~~~~sp-dg~~l~s~~  360 (408)
                                .....                                        +..+...+..++|+| ||++|+++ 
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-  273 (349)
T 1jmx_B          195 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-  273 (349)
T ss_dssp             CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-
T ss_pred             ccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-
Confidence                      00000                                        000112456788999 99999988 


Q ss_pred             CCeEEEEECCCCCCceeeeeecc
Q 015363          361 YMTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       361 d~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                      ++.|.+||+.+ ++.++.+....
T Consensus       274 ~~~v~~~d~~~-~~~~~~~~~~~  295 (349)
T 1jmx_B          274 LNRLAKYDLKQ-RKLIKAANLDH  295 (349)
T ss_dssp             ESEEEEEETTT-TEEEEEEECSS
T ss_pred             cCeEEEEECcc-CeEEEEEcCCC
Confidence            88999999987 67777776443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.69  E-value=8.1e-15  Score=128.49  Aligned_cols=209  Identities=12%  Similarity=0.072  Sum_probs=138.3

Q ss_pred             cEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCce
Q 015363          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS  206 (408)
Q Consensus       127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  206 (408)
                      .++++++.++.|.+||+.+++....+......      +       .+..++++|+|+.+           +++...++.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~------~-------~~~~~~~s~dg~~l-----------~v~~~~~~~   57 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAG------P-------TPMVPMVAPGGRIA-----------YATVNKSES   57 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCT------T-------CCCCEEECTTSSEE-----------EEEETTTTE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCC------C-------CccceEEcCCCCEE-----------EEEeCCCCe
Confidence            47889999999999999999877766543200      0       01168999999865           355667889


Q ss_pred             eeeceeeeccccccccccceeeccc----cccceEEEEeCCCCCEEEEe-------------cCCeEEEEeCCCCCceee
Q 015363          207 LRLPVVVTSQETNLVAGCRRIYAHA----HDYHINSISNNSDGETFISA-------------DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~  269 (408)
                      |.+|| +...+      ....+...    +...+..++|+|+++.++++             .++.|.+||+.+ .+...
T Consensus        58 v~~~d-~~~~~------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~  129 (337)
T 1pby_B           58 LVKID-LVTGE------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRK  129 (337)
T ss_dssp             EEEEE-TTTCC------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEE
T ss_pred             EEEEE-CCCCC------eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC-CcEEE
Confidence            99999 43322      11211111    12356789999999888876             369999999984 44433


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccccc--C-----CCCc--------
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE--A-----PGTR--------  334 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~-----~~~~--------  334 (408)
                      .+       .. ...+.+++|+|++ ++|+++  ++.|.+||+.+++..    ..+..+.  .     +...        
T Consensus       130 ~~-------~~-~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~s~dg~~l~~~~~~  194 (337)
T 1pby_B          130 AF-------EA-PRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLV----EDKPIQSWEAETYAQPDVLAVWNQHES  194 (337)
T ss_dssp             EE-------EC-CSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEE----EEECSTTTTTTTBCCCBCCCCCCCCTT
T ss_pred             EE-------eC-CCCcceeEECCCC-CEEEEe--CCeEEEEECCCCcEe----eeeeccccCCCceeCCCccEEeeeccC
Confidence            32       11 3346788999999 777776  688999999988653    1111111  0     0000        


Q ss_pred             ---------------------------------------cccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCc
Q 015363          335 ---------------------------------------SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP  375 (408)
Q Consensus       335 ---------------------------------------~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~  375 (408)
                                                             ..+..+...+.+++|+|||++|+++ ++.|.+||+.+ ++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~  272 (337)
T 1pby_B          195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NAS  272 (337)
T ss_dssp             TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEE
T ss_pred             CCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcC
Confidence                                                   0011222346679999999999988 78999999987 677


Q ss_pred             eeeeeeccc
Q 015363          376 VATFQVHEH  384 (408)
Q Consensus       376 ~~~~~~~~~  384 (408)
                      +..+..+..
T Consensus       273 ~~~~~~~~~  281 (337)
T 1pby_B          273 IKRVPLPHS  281 (337)
T ss_dssp             EEEEECSSC
T ss_pred             cceecCCCc
Confidence            777765433

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.67  E-value=3e-15  Score=141.65  Aligned_cols=204  Identities=11%  Similarity=0.052  Sum_probs=133.9

Q ss_pred             cceeEEEEeecCCCcEEEEEeC-CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      .+|.+++|+|+  |++||+++. ||+++||++.+++..+....+.        ..+.       .+.|+|+ +.+     
T Consensus        22 ~~~~~~~~~~D--G~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~--------~~~~-------~~~~spd-~~l-----   78 (582)
T 3o4h_A           22 VEKYSLQGVVD--GDKLLVVGFSEGSVNAYLYDGGETVKLNREPI--------NSVL-------DPHYGVG-RVI-----   78 (582)
T ss_dssp             SCEEEEEEEET--TTEEEEEEEETTEEEEEEEETTEEEECCSSCC--------SEEC-------EECTTCS-EEE-----
T ss_pred             cchheeecCCC--CCeEEEEEccCCceeEEEEcCCCcEeeecccc--------cccc-------cccCCCC-eEE-----
Confidence            56999999876  889999886 9999999997777655443321        1122       5788888 554     


Q ss_pred             cccCccccCCCC---Cceeeeceeeecc-ccccccccceeeccccccceEEEEeCCCCC--EEEEecCCeEEEEeCCCCC
Q 015363          192 CASNDSSFPPGG---VSSLRLPVVVTSQ-ETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISADDLRINLWNLEISN  265 (408)
Q Consensus       192 ~~~~~~~~~~~~---~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~d~~i~iwd~~~~~  265 (408)
                             ++++.   +....+|. +... +..    .. .+...  ..+...+|+|+++  .++++.++.+.+||+.+ +
T Consensus        79 -------~~~~~~~g~~~~~l~~-~~~~~~g~----~~-~l~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~-g  142 (582)
T 3o4h_A           79 -------LVRDVSKGAEQHALFK-VNTSRPGE----EQ-RLEAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDG-G  142 (582)
T ss_dssp             -------EEEECSTTSCCEEEEE-EETTSTTC----CE-ECTTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEET-T
T ss_pred             -------EEeccCCCCcceEEEE-EeccCCCc----cc-cccCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccC-C
Confidence                   54332   44556665 3220 111    11 11111  1233557777775  34445555556999984 4


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC----CeEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                      ....+        ..+..  .+++|+||| ++|++++.+    +.|++||+.+++.     ..+..+            .
T Consensus       143 ~~~~l--------~~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~-----~~l~~~------------~  194 (582)
T 3o4h_A          143 GLREL--------ARLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGL-----RVFDSG------------E  194 (582)
T ss_dssp             EEEEE--------EEESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCC-----EEECCS------------S
T ss_pred             cEEEe--------ecCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCc-----eEeecC------------C
Confidence            43333        11222  789999999 899988777    7899999988754     334444            3


Q ss_pred             ceeEEEEEccCCCEEEEeC-CC--eEEEEECCCCCCceeeeeecccc
Q 015363          342 ASISDIKFARNGRHILSRD-YM--TLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~s~~-d~--~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                      ..+..++|||||++|++++ ++  .|++||+++ ++.. .+.+|...
T Consensus       195 ~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~  239 (582)
T 3o4h_A          195 GSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKD  239 (582)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSH
T ss_pred             CccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcC
Confidence            6789999999999999764 56  899999987 5665 66666554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.66  E-value=7.3e-15  Score=131.64  Aligned_cols=257  Identities=9%  Similarity=0.007  Sum_probs=146.6

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      |...+..+.|+|||+.|+.++.++.|++||+.+++..                       ..+..+.            .
T Consensus        79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~-----------------------~~~~~~~------------~  123 (388)
T 3pe7_A           79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN-----------------------VVYQVPA------------E  123 (388)
T ss_dssp             SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE-----------------------EEEECCT------------T
T ss_pred             CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcce-----------------------eeeechh------------h
Confidence            3444556789999999999999999999999877531                       1222232            2


Q ss_pred             ceeEEEEeecCCCcEEEEE----------------------eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeec
Q 015363          114 KINKIRWCQSANSALYLLS----------------------TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~----------------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (408)
                      .+....|..++++.+++..                      ..+..|.+||+.+++...+.....         .+.   
T Consensus       124 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~---------~~~---  191 (388)
T 3pe7_A          124 WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ---------WLG---  191 (388)
T ss_dssp             EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS---------CEE---
T ss_pred             cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc---------ccc---
Confidence            3444555445668777642                      245789999999987666543321         122   


Q ss_pred             CCceeeEEcc-CCCeeecccccccCccccCCC---CCceeeeceeeeccccccccccceeeccccc-cceEEEEeCCCCC
Q 015363          172 VSAIPKSYMA-NGGCGERNFGCASNDSSFPPG---GVSSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGE  246 (408)
Q Consensus       172 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~  246 (408)
                          .+.|+| +|+.+....         ...   ....|.+++ ....       ..+.+...+. ..+..++|+|||+
T Consensus       192 ----~~~~sp~dg~~l~~~~---------~~~~~~~~~~l~~~d-~~~~-------~~~~l~~~~~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          192 ----HPIYRPYDDSTVAFCH---------EGPHDLVDARMWLIN-EDGT-------NMRKVKTHAEGESCTHEFWVPDGS  250 (388)
T ss_dssp             ----EEEEETTEEEEEEEEE---------CSCTTTSSCSEEEEE-TTSC-------CCEESCCCCTTEEEEEEEECTTSS
T ss_pred             ----ccEECCCCCCEEEEEE---------ecCCCCCcceEEEEe-CCCC-------ceEEeeeCCCCcccccceECCCCC
Confidence                578999 998762111         011   123455544 2211       1122212221 3577889999999


Q ss_pred             EEEEe--cCC----eEEEEeCCCCCceeeEeecCCCcccCCcCC---eEEEEEcCCCCceEEEE---------eCCCeEE
Q 015363          247 TFISA--DDL----RINLWNLEISNQSFNIVDVKPANMEDLTEV---ITSAEFHPTHCNMLAYS---------SSKGSIR  308 (408)
Q Consensus       247 ~l~~~--~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~p~~~~~l~s~---------~~dg~i~  308 (408)
                      .|+..  .++    .|++||+.++.. ..+..     +.++...   ...+.|+|+| +.|+..         ..+..|+
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~-----~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~i~  323 (388)
T 3pe7_A          251 ALVYVSYLKGSPDRFIYSADPETLEN-RQLTS-----MPACSHLMSNYDGSLMVGDG-SDAPVDVQDDSGYKIENDPFLY  323 (388)
T ss_dssp             CEEEEEEETTCCCEEEEEECTTTCCE-EEEEE-----ECCEEEEEECTTSSEEEEEE-CCC------------CCCCEEE
T ss_pred             EEEEEecCCCCCcceEEEEecCCCce-EEEEc-----CCCceeeeecCCCCeEccCC-CcceeEeeeccccccCCCCEEE
Confidence            77653  322    399999985442 22211     1111000   1123799999 655543         4567999


Q ss_pred             EEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC--CCeEEEEECCC
Q 015363          309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINM  371 (408)
Q Consensus       309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~  371 (408)
                      +||+.+++.     ..+..+... ......+....+..++|+|||+.|+..+  ++...||.++.
T Consensus       324 ~~d~~~~~~-----~~l~~~~~~-~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          324 VFNMKNGTQ-----HRVARHDTS-WKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             EEETTTTEE-----EEEEECCCC-CCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             EEeccCCce-----EEeccccCc-ccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence            999998754     233333110 0000000011467789999999888663  46666776543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.66  E-value=1.2e-14  Score=130.54  Aligned_cols=263  Identities=10%  Similarity=0.043  Sum_probs=155.1

Q ss_pred             eccceEEEEECCCCCeEEEeecC---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      |...+.+++|+|||++|+.....   ..|.+|++.+++.                        ..+..+..         
T Consensus        34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~------------------------~~l~~~~~---------   80 (396)
T 3c5m_A           34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA------------------------VQLTEGKG---------   80 (396)
T ss_dssp             ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE------------------------EECCCSSC---------
T ss_pred             cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE------------------------EEeecCCC---------
Confidence            44447889999999998877543   3678888776642                        11222220         


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCC--c-----eeeEEccCC
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS--A-----IPKSYMANG  183 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-----~~~~~~~~~  183 (408)
                        .....+.|+|  +|++|+.++.++.|.+||+.+++...+...+...   .+.+........  .     ....++|++
T Consensus        81 --~~~~~~~~sp--dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~g~~l~~~~~~~~~~~~~~~~~~spdg  153 (396)
T 3c5m_A           81 --DNTFGGFIST--DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW---KGYGTWVANSDCTKLVGIEILKRDWQPLT  153 (396)
T ss_dssp             --BCTTTCEECT--TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE---EEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             --CccccceECC--CCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc---CCCCCEEEeccCCccccccccccccCCCC
Confidence              1133478965  4889999999999999999998876665543211   001100000000  0     013456666


Q ss_pred             CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-cC------Ce
Q 015363          184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DD------LR  255 (408)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d------~~  255 (408)
                      +.+.....       .....+..|.+|| +...+      ... + ..+...+..+.|+| ++..|+.. .+      ..
T Consensus       154 ~~~~~~~~-------~~~~~~~~l~~~d-~~~g~------~~~-~-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~  217 (396)
T 3c5m_A          154 SWEKFAEF-------YHTNPTCRLIKVD-IETGE------LEV-I-HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDAR  217 (396)
T ss_dssp             SHHHHHHH-------HHTCCCEEEEEEE-TTTCC------EEE-E-EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCC
T ss_pred             cceeeeee-------ccCCCcceEEEEE-CCCCc------EEe-e-ccCCcccccceECCCCCCEEEEEecCCCCCCCce
Confidence            65410000       0114667788888 43211      111 1 24456788999999 78766654 32      47


Q ss_pred             EEEEeCCCCCceeeEeecCCCcccCC--cCCeEEEEEcCCCCceEEEEeCC-----CeEEEEEcCCCceecccccccccc
Q 015363          256 INLWNLEISNQSFNIVDVKPANMEDL--TEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDMRQSALCDTHSKLFEEQ  328 (408)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~  328 (408)
                      |.+||+.. .....        +..+  ...+..++|+|+| +.|+.++.+     +.|++||+.+++..     .+...
T Consensus       218 l~~~d~~~-~~~~~--------l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~-----~l~~~  282 (396)
T 3c5m_A          218 MWLVNEDG-SNVRK--------IKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENE-----EVMVM  282 (396)
T ss_dssp             CEEEETTS-CCCEE--------SSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEE-----EEEEC
T ss_pred             EEEEECCC-CceeE--------eeccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeE-----EeeeC
Confidence            88888873 33222        1222  2357889999999 766666543     45999999887542     11111


Q ss_pred             cCCCCccccccccceeEEEEEcc-CCCEEEEeC-----------------CCeEEEEECCCCCCceeeeeecc
Q 015363          329 EAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-----------------YMTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       329 ~~~~~~~~~~~h~~~i~~~~~sp-dg~~l~s~~-----------------d~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                                   .... +.|+| ||++|+++.                 +..|++||+.+ ++ +..+..+.
T Consensus       283 -------------~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~  339 (396)
T 3c5m_A          283 -------------PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KS-AQKLCKHS  339 (396)
T ss_dssp             -------------CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-TB-CCEEEECC
T ss_pred             -------------CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-Cc-eEEccCCC
Confidence                         0122 88999 999888642                 37899999976 44 34555544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.66  E-value=1e-13  Score=119.35  Aligned_cols=250  Identities=8%  Similarity=-0.048  Sum_probs=154.7

Q ss_pred             eccceEEEEECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           34 EVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        34 h~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      +.....+++|+|+|+ +++++..++.|.+|+..++ .                        ..+..+.            
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------------~~~~~~~------------   68 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------------SPEMHPS------------   68 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------------------------EEEESSC------------
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------------------------EEEECCC------------
Confidence            445678999999998 7888888999999997754 2                        2333333            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc--
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF--  190 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~--  190 (408)
                      ..+.++++.  ++|.++++...++.|.+||..+++...........           ....+..+++.|+|+...+-.  
T Consensus        69 ~~~~~l~~~--~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~-----------~~~~~~~i~~d~~G~l~vtd~~~  135 (296)
T 3e5z_A           69 HHQNGHCLN--KQGHLIACSHGLRRLERQREPGGEWESIADSFEGK-----------KLNSPNDVCLAPDGSLWFSDPTY  135 (296)
T ss_dssp             SSEEEEEEC--TTCCEEEEETTTTEEEEECSTTCCEEEEECEETTE-----------ECCCCCCEEECTTSCEEEEECSH
T ss_pred             CCcceeeEC--CCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCC-----------CCCCCCCEEECCCCCEEEECCcc
Confidence            458899995  45877777667799999999888765543221110           001122578888888651100  


Q ss_pred             ccccCc---cccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363          191 GCASND---SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       191 ~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                      +.....   ........+.|..++   .. .    . ...+ ..+....+.++|+|+++.+++. .++.|.+|++...+.
T Consensus       136 g~~~~~~~~~~~~~~~~~~l~~~~---~~-g----~-~~~~-~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~  205 (296)
T 3e5z_A          136 GIDKPEEGYGGEMELPGRWVFRLA---PD-G----T-LSAP-IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE  205 (296)
T ss_dssp             HHHCGGGSSCCCCCSSSCEEEEEC---TT-S----C-EEEE-ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC
T ss_pred             ccccccccccccccCCCcEEEEEC---CC-C----C-EEEe-ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc
Confidence            000000   000000123344333   11 1    1 1111 3344567899999999998666 789999999973333


Q ss_pred             e---eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          267 S---FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       267 ~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                      .   ...       +..+...+..++++++| +++++.  ++.|.+||.. ++..    ..+..+            .. 
T Consensus       206 ~~~~~~~-------~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~-g~~~----~~~~~~------------~~-  257 (296)
T 3e5z_A          206 TEYQGVH-------FTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD-GDEL----GRVLTP------------QT-  257 (296)
T ss_dssp             EEEEEEE-------ECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT-SCEE----EEEECS------------SC-
T ss_pred             CcCCCeE-------eeCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCC-CCEE----EEEECC------------CC-
Confidence            3   122       11234456789999999 766665  8899999986 4333    344444            24 


Q ss_pred             eEEEEE-ccCCCEEEEeCCCeEEEEECCC
Q 015363          344 ISDIKF-ARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       344 i~~~~~-spdg~~l~s~~d~~v~~wd~~~  371 (408)
                      +.+++| +|+++.|+.++.+.+.-++.++
T Consensus       258 ~~~~~f~~~d~~~L~v~t~~~l~~~~~~~  286 (296)
T 3e5z_A          258 TSNLCFGGPEGRTLYMTVSTEFWSIETNV  286 (296)
T ss_dssp             CCEEEEESTTSCEEEEEETTEEEEEECSC
T ss_pred             ceeEEEECCCCCEEEEEcCCeEEEEEccc
Confidence            788999 5899988888665666666654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.64  E-value=2.2e-14  Score=139.35  Aligned_cols=210  Identities=12%  Similarity=0.102  Sum_probs=134.0

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ....++.|+|+  |++++++  |++|++||+.+++....+..+.....     .+     ....+.|+|||+.+      
T Consensus        17 ~~~~~~~w~~d--g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~Spdg~~l------   76 (740)
T 4a5s_A           17 LKLYSLRWISD--HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEF-----GH-----SINDYSISPDGQFI------   76 (740)
T ss_dssp             CCCCCEEECSS--SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTC-----CS-----CCCEEEECTTSSEE------
T ss_pred             ccccccEECCC--CcEEEEc--CCcEEEEECCCCceEEEEechhhhhh-----cc-----cccceEECCCCCEE------
Confidence            34668999755  7777775  99999999999988777665432100     00     00136889999987      


Q ss_pred             ccCccccCCCCC---------ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCC
Q 015363          193 ASNDSSFPPGGV---------SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEI  263 (408)
Q Consensus       193 ~~~~~~~~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~  263 (408)
                            +.++.+         +.+.+|| +...+      +. . +..+...+..++|||||+.||.+.++.|++||+.+
T Consensus        77 ------~~~~~~~~~~r~~~~~~~~~~d-~~~~~------~~-~-l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~  141 (740)
T 4a5s_A           77 ------LLEYNYVKQWRHSYTASYDIYD-LNKRQ------LI-T-EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPN  141 (740)
T ss_dssp             ------EEEEEEEECSSSCEEEEEEEEE-TTTTE------EC-C-SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTT
T ss_pred             ------EEEECCeeeEEEccceEEEEEE-CCCCc------EE-E-cccCCCcceeeEECCCCCEEEEEECCeEEEEECCC
Confidence                  444443         5667888 43322      11 1 24566779999999999999998889999999984


Q ss_pred             CCceeeEeecCCCcccCCcCCe-----------------EEEEEcCCCCceEEEEeCCC---------------------
Q 015363          264 SNQSFNIVDVKPANMEDLTEVI-----------------TSAEFHPTHCNMLAYSSSKG---------------------  305 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~p~~~~~l~s~~~dg---------------------  305 (408)
                      +. ..++      +..++...+                 ..+.||||| +.||.++.|.                     
T Consensus       142 ~~-~~~l------t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~  213 (740)
T 4a5s_A          142 LP-SYRI------TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKT  213 (740)
T ss_dssp             SC-CEEC------CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred             Cc-eEEE------cCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcc
Confidence            43 3322      122222222                 358999999 8888775432                     


Q ss_pred             ---------------eEEEEEcCC---CceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe----CC-C
Q 015363          306 ---------------SIRLIDMRQ---SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR----DY-M  362 (408)
Q Consensus       306 ---------------~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~----~d-~  362 (408)
                                     +|++||+.+   +... . ...+...      ..+.+|...+..++|+|||+.++..    ++ .
T Consensus       214 ~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~-~-~~~l~~~------~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~  285 (740)
T 4a5s_A          214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA-T-SIQITAP------ASMLIGDHYLCDVTWATQERISLQWLRRIQNYS  285 (740)
T ss_dssp             EEEECCBTTSCCCEEEEEEEETTSCCSSSCC-C-EEEECCC------HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE
T ss_pred             eeecCCCCcCcCCeeEEEEEECCCCCCCCcc-e-EEEecCC------ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEE
Confidence                           466666665   4210 0 0111110      0011245779999999999977654    22 5


Q ss_pred             eEEEEECCCCCC
Q 015363          363 TLKLWDINMDSG  374 (408)
Q Consensus       363 ~v~~wd~~~~~~  374 (408)
                      .|++||+.+ ++
T Consensus       286 ~i~~~d~~t-g~  296 (740)
T 4a5s_A          286 VMDICDYDE-SS  296 (740)
T ss_dssp             EEEEEEEET-TT
T ss_pred             EEEEEECCC-Cc
Confidence            799999987 55

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.64  E-value=4.9e-14  Score=124.66  Aligned_cols=261  Identities=10%  Similarity=0.021  Sum_probs=148.2

Q ss_pred             EEEECCCCCeEEEee----------cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        40 ~~~~s~~~~~l~sg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .++|+|||++|+++.          .++.|.+||..+.+.                       ...+......      .
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-----------------------~~~i~~~~~~------~  104 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-----------------------EKEISLPPKR------V  104 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-----------------------EEEEEECTTB------C
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-----------------------EEEEEcCccc------c
Confidence            899999999998886          367899999876542                       1222211000      0


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeC--CCeEEEEEcCCCcEEEE-eccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                      ........++++|  +|++|+++..  +++|.+||+.+++.... +......                 .+...|++...
T Consensus       105 ~~g~~p~~i~~sp--dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~-----------------~v~~~p~~~~~  165 (361)
T 2oiz_A          105 QGLNYDGLFRQTT--DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCW-----------------SVIPQPNRPRS  165 (361)
T ss_dssp             CBCCCGGGEEECT--TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEE-----------------EEEECTTSSSE
T ss_pred             ccCCCcceEEECC--CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcc-----------------eeEEcCCCCee
Confidence            0003366789964  5888888863  68999999999977665 4332110                 12233443211


Q ss_pred             ecccccccCccccCCCCCceeeeceeeecccccc-ccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL-VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS  264 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~  264 (408)
                                 +++.+.++.+..++ ........ ....... ......++ .+.+++++..++.. .++.|.++|+...
T Consensus       166 -----------~~~~~~dg~~~~v~-~~~~g~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~  231 (361)
T 2oiz_A          166 -----------FMTICGDGGLLTIN-LGEDGKVASQSRSKQM-FSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGD  231 (361)
T ss_dssp             -----------EEEEETTSSEEEEE-ECTTSSEEEEEECCCC-SCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSS
T ss_pred             -----------EEEECCCCcEEEEE-ECCCCcEeeeccccce-EcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCC
Confidence                       13444555555555 22100000 0000000 01111111 22345666666655 7789999998743


Q ss_pred             Cce-eeEeecCCCc---ccCCcCCeEEEEEcCCCCceEEEEe----------CCCeEEEEEcCCCceecccccccccccC
Q 015363          265 NQS-FNIVDVKPAN---MEDLTEVITSAEFHPTHCNMLAYSS----------SKGSIRLIDMRQSALCDTHSKLFEEQEA  330 (408)
Q Consensus       265 ~~~-~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~  330 (408)
                      ... ...+++....   ..........++|+|++..++++..          ..+.|.+||+.+++.+    ..+..+  
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v----~~i~~~--  305 (361)
T 2oiz_A          232 EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV----ARIPGR--  305 (361)
T ss_dssp             SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE----EEEECT--
T ss_pred             CceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE----EEEecC--
Confidence            321 1111110000   0000111123789999834444433          1358999999998665    555554  


Q ss_pred             CCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCC--Cceeeeee
Q 015363          331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS--GPVATFQV  381 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~--~~~~~~~~  381 (408)
                                 . +.+++|+|||++|++++++.|.+||..+ +  +.++++..
T Consensus       306 -----------~-p~~ia~spdg~~l~v~n~~~v~v~D~~t-~~l~~~~~i~~  345 (361)
T 2oiz_A          306 -----------D-ALSMTIDQQRNLMLTLDGGNVNVYDISQ-PEPKLLRTIEG  345 (361)
T ss_dssp             -----------T-CCEEEEETTTTEEEEECSSCEEEEECSS-SSCEEEEEETT
T ss_pred             -----------C-eeEEEECCCCCEEEEeCCCeEEEEECCC-CcceeeEEecc
Confidence                       3 7899999999999988669999999997 7  77777643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.62  E-value=9.4e-13  Score=115.29  Aligned_cols=243  Identities=12%  Similarity=0.076  Sum_probs=147.3

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .+...+.+++|+++|++++++..++.|.+||.++++..                       .....+.            
T Consensus        42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-----------------------~~~~~~~------------   86 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-----------------------RPFVSHK------------   86 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-----------------------EEEECSS------------
T ss_pred             ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-----------------------EEeeCCC------------
Confidence            34556789999999998888888999999998766421                       1111222            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCC----CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          113 EKINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      ..+.+++|.  ++|.++++...+    +.|.+||..++...........      ...+.       .+.+.|+|...  
T Consensus        87 ~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------~~~~~-------~i~~d~~g~l~--  149 (333)
T 2dg1_A           87 ANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST------AYCID-------DMVFDSKGGFY--  149 (333)
T ss_dssp             SSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS------CCCEE-------EEEECTTSCEE--
T ss_pred             CCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCcc------CCccc-------ceEECCCCCEE--
Confidence            558999995  457777776666    6899999988776543321110      11222       67888988765  


Q ss_pred             ccccccCccccCCCC------CceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEe
Q 015363          189 NFGCASNDSSFPPGG------VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN  260 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd  260 (408)
                                ++...      .+.|..++ ....      .. ..+ ..+...+..++|+|+++.++.+  .++.|.+||
T Consensus       150 ----------v~~~~~~~~~~~~~l~~~~-~~~~------~~-~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d  210 (333)
T 2dg1_A          150 ----------FTDFRGYSTNPLGGVYYVS-PDFR------TV-TPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIA  210 (333)
T ss_dssp             ----------EEECCCBTTBCCEEEEEEC-TTSC------CE-EEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             ----------EEeccccccCCCceEEEEe-CCCC------EE-EEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEE
Confidence                      33222      24444444 1110      11 111 1222457889999999866544  688999999


Q ss_pred             CCCCCceeeEeecC-CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccc
Q 015363          261 LEISNQSFNIVDVK-PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE  339 (408)
Q Consensus       261 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (408)
                      .+..+.....+... ...+.++ ..+..++++++| +++++...++.|.+||.. ++..    ..+..+..      ..+
T Consensus       211 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~-g~~~----~~~~~~~~------~~g  277 (333)
T 2dg1_A          211 LEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR-GYPI----GQILIPGR------DEG  277 (333)
T ss_dssp             ECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTT-SCEE----EEEECTTG------GGT
T ss_pred             ecCCCcCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCC-CCEE----EEEEcCCC------ccc
Confidence            96432222111000 0012222 357889999999 888877778999999984 4332    23322210      011


Q ss_pred             ccceeEEEEEccCCCEEEEe
Q 015363          340 IIASISDIKFARNGRHILSR  359 (408)
Q Consensus       340 h~~~i~~~~~spdg~~l~s~  359 (408)
                      |...+.+++|+||++.|+.+
T Consensus       278 ~~~~~~~~~~~~dg~~L~v~  297 (333)
T 2dg1_A          278 HMLRSTHPQFIPGTNQLIIC  297 (333)
T ss_dssp             CSCBCCEEEECTTSCEEEEE
T ss_pred             cccCcceEEECCCCCEEEEE
Confidence            12257889999998766644

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.61  E-value=5.6e-14  Score=135.03  Aligned_cols=201  Identities=9%  Similarity=0.004  Sum_probs=121.8

Q ss_pred             cceeEEEEeecCCCcEEEEEeCC----------CeEEEEEcCC------CcEEEEe-ccCCCCcccCCCCCeEeecCCce
Q 015363          113 EKINKIRWCQSANSALYLLSTND----------KTIKLWKVQE------KKVKKVF-DWNVHPEKAAGNGPIFGSHVSAI  175 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d----------~~i~vwd~~~------~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~  175 (408)
                      ..+.+++|+|+  |+.|++++.|          ..|++||+.+      ++...+. ...         ..+.       
T Consensus       130 ~~~~~~~~spD--g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~-------  191 (662)
T 3azo_A          130 LRWADPVLLPE--RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH---------RFVT-------  191 (662)
T ss_dssp             EEEEEEEEETT--TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS---------SEEC-------
T ss_pred             ccccCcEECCC--CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC---------Cccc-------
Confidence            56889999755  8899998876          5899999988      6554432 111         1111       


Q ss_pred             eeEEccCCCeeecccccccCccccCCCC--------CceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCE
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPPGG--------VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET  247 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  247 (408)
                      .+.|+|||+.|            +..+.        ...|.+|+ +....  ..... ..+...+...+..++|+|||++
T Consensus       192 ~~~~SpDG~~l------------a~~~~~~~~~~~~~~~i~~~d-~~~~g--~~~~~-~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          192 GPRLSPDGRQA------------VWLAWDHPRMPWEGTELKTAR-VTEDG--RFADT-RTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             CCEECTTSSEE------------EEEEECTTCCTTTCEEEEEEE-ECTTS--CEEEE-EEEEEETTBCEEEEEECTTSCE
T ss_pred             CceECCCCCEE------------EEEECCCCCCCCCCcEEEEEE-ECCCC--ccccc-EEeCCCCCceEcceEECCCCeE
Confidence            57899999987            33222        25788888 54110  00011 2222455678999999999997


Q ss_pred             EEEe-cCC--eEEEEeCCCCCceeeEeecCCCcccCCcCC--------eEEEEEcCCCCceEEEEeCCCeEEEE--EcCC
Q 015363          248 FISA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEV--------ITSAEFHPTHCNMLAYSSSKGSIRLI--DMRQ  314 (408)
Q Consensus       248 l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~p~~~~~l~s~~~dg~i~iw--d~~~  314 (408)
                      ++++ .++  .|.+||+. .+....+.       ..+...        +..++|+|++ ++++++.. +.++||  |+.+
T Consensus       256 ~~~~~~~~~~~l~~~~~~-~~~~~~l~-------~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~  325 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPA-TGAATQLC-------RREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPES  325 (662)
T ss_dssp             EEEECTTSSCEEEEECTT-TCCEEESS-------CCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTT
T ss_pred             EEEECCCCCeEEEEEECC-CCceeecc-------cccccccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCC
Confidence            7777 677  56666664 33333221       111111        4578999999 89999888 999999  5544


Q ss_pred             CceecccccccccccCCCCccccccccceeEEEEEccCCCEE--EEeC-C--CeEEEEECCCCCCce
Q 015363          315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI--LSRD-Y--MTLKLWDINMDSGPV  376 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l--~s~~-d--~~v~~wd~~~~~~~~  376 (408)
                      +..     +.+..+            ...+..+ |++++..+  ++++ +  ..|.+||+.+ ++..
T Consensus       326 ~~~-----~~l~~~------------~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~-g~~~  373 (662)
T 3azo_A          326 GEL-----VDAAGP------------WTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVT-GRAR  373 (662)
T ss_dssp             TEE-----EECCSS------------CCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTT-CCEE
T ss_pred             CcE-----EEecCC------------CCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCC-CceE
Confidence            432     344433            2456655 14445433  3333 3  3566667765 4433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=4e-13  Score=129.96  Aligned_cols=255  Identities=9%  Similarity=0.083  Sum_probs=155.8

Q ss_pred             eccceEEEEECCCCCeEEEeecCC-----eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGG-----RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      |...+..++|||||++||.++.++     .|++||+.+++..                      ...+..          
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~----------------------~~~~~~----------  170 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL----------------------PDVLER----------  170 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE----------------------EEEEEE----------
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC----------------------cccccC----------
Confidence            444688999999999999876543     8999999887531                      001111          


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCe----------------EEEEEcCCCcE--EEEeccCCCCcccCCCCCeEee
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKT----------------IKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGS  170 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~----------------i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~  170 (408)
                          ..+..++|+|+  |+.|+.++.++.                |++|++.+++.  ..+.....++      ..+.  
T Consensus       171 ----~~~~~~~wspD--g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~------~~~~--  236 (710)
T 2xdw_A          171 ----VKFSCMAWTHD--GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP------KWMG--  236 (710)
T ss_dssp             ----ECSCCEEECTT--SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT------TCEE--
T ss_pred             ----cccceEEEEeC--CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC------eEEE--
Confidence                23678999754  889999887765                99999988753  2222222111      1122  


Q ss_pred             cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccccc-ccccceeeccccccceEEEEeCCCCCEEE
Q 015363          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL-VAGCRRIYAHAHDYHINSISNNSDGETFI  249 (408)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  249 (408)
                           .+.|+|||+.+......       ....+..|.+|| +....... .....+.+ ..+...+.. .|+|+|+.|+
T Consensus       237 -----~~~~SpDg~~l~~~~~~-------~~~~~~~l~~~d-~~~~~~~~~~~~~~~~l-~~~~~~~~~-~~s~dg~~l~  301 (710)
T 2xdw_A          237 -----GAELSDDGRYVLLSIRE-------GCDPVNRLWYCD-LQQESNGITGILKWVKL-IDNFEGEYD-YVTNEGTVFT  301 (710)
T ss_dssp             -----EEEECTTSCEEEEEEEC-------SSSSCCEEEEEE-GGGSSSSSCSSCCCEEE-ECSSSSCEE-EEEEETTEEE
T ss_pred             -----EEEEcCCCCEEEEEEEc-------cCCCccEEEEEE-CcccccccCCccceEEe-eCCCCcEEE-EEeccCCEEE
Confidence                 57899999987221100       011156788888 43210000 00012222 334344444 4788888776


Q ss_pred             Ee-c----CCeEEEEeCCCCCc-eeeEeecCCCcccCCc--CCeEEEEEcCCCCceEEEEeCCCe--EEEEEcCCCceec
Q 015363          250 SA-D----DLRINLWNLEISNQ-SFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSSKGS--IRLIDMRQSALCD  319 (408)
Q Consensus       250 ~~-~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~  319 (408)
                      .. .    ...|.+||+..... ..+.       +..|.  ..+..++|++++ .++++...|+.  |.+||+.+++.. 
T Consensus       302 ~~s~~~~~~~~l~~~d~~~~~~~~~~~-------l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~~~-  372 (710)
T 2xdw_A          302 FKTNRHSPNYRLINIDFTDPEESKWKV-------LVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGALL-  372 (710)
T ss_dssp             EEECTTCTTCEEEEEETTSCCGGGCEE-------EECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCCEE-
T ss_pred             EEECCCCCCCEEEEEeCCCCCccccee-------ccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCCEE-
Confidence            54 2    34799999985432 1121       12232  357789999777 88888888885  566677566432 


Q ss_pred             ccccccccccCCCCccccccccceeEEEEEccCCCEEEEe--C---CCeEEEEECCCCCC
Q 015363          320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D---YMTLKLWDINMDSG  374 (408)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~---d~~v~~wd~~~~~~  374 (408)
                         ..+..+            .+.+..+.++|++..|+..  +   .++|++||+.+ ++
T Consensus       373 ---~~l~~~------------~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t-g~  416 (710)
T 2xdw_A          373 ---KIFPLE------------VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK-EE  416 (710)
T ss_dssp             ---EEECCC------------SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS-SS
T ss_pred             ---EecCCC------------CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC-Cc
Confidence               333333            2578889999998766532  2   28999999986 44

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=1.4e-13  Score=132.81  Aligned_cols=250  Identities=6%  Similarity=-0.031  Sum_probs=151.7

Q ss_pred             eccceEEEEECCCCCeEE-----EeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           34 EVDIISAIEFDKSGDHLA-----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~-----sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      |...+.+++|||||++||     .|+.+..|++||+.+++..                       .  ..+...      
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~-----------------------~--~~~~~~------  167 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS-----------------------K--VDVIEG------  167 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC-----------------------S--SCCBSC------
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc-----------------------C--CcccCc------
Confidence            455799999999999998     4555678999999887531                       0  011100      


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCe-------------EEEEEcCCCcE--EEEeccCCCCcccCCCCCeEeecCC
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKT-------------IKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVS  173 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~-------------i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~  173 (408)
                          .....++|+|  ||+.|+.++.|..             |++|++.++..  ..+.....+      ...+.     
T Consensus       168 ----~~~~~~~wsp--Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~------~~~~~-----  230 (695)
T 2bkl_A          168 ----GKYATPKWTP--DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD------PTTFL-----  230 (695)
T ss_dssp             ----CTTCCCEECT--TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC------TTCEE-----
T ss_pred             ----ccccceEEec--CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC------CEEEE-----
Confidence                1126789965  4889999988776             99999988762  233332211      11222     


Q ss_pred             ceeeEEccCCCeeecccccccCccccCCCCC--c--eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE
Q 015363          174 AIPKSYMANGGCGERNFGCASNDSSFPPGGV--S--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI  249 (408)
Q Consensus       174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  249 (408)
                        .+.|+|+|+.+            +..+.+  +  .|.+++ .   .   .. ..+.+ ..+...+....+ +++.+++
T Consensus       231 --~~~~SpDG~~l------------~~~~~~~~~~~~l~~~~-~---~---~~-~~~~l-~~~~~~~~~~~~-~~g~l~~  286 (695)
T 2bkl_A          231 --QSDLSRDGKYL------------FVYILRGWSENDVYWKR-P---G---EK-DFRLL-VKGVGAKYEVHA-WKDRFYV  286 (695)
T ss_dssp             --EEEECTTSCCE------------EEEEEETTTEEEEEEEC-T---T---CS-SCEEE-EECSSCCEEEEE-ETTEEEE
T ss_pred             --EEEECCCCCEE------------EEEEeCCCCceEEEEEc-C---C---CC-ceEEe-ecCCCceEEEEe-cCCcEEE
Confidence              67899999987            333322  2  444433 1   1   11 11222 333344555556 5555444


Q ss_pred             Eec----CCeEEEEeCCCCCc--eeeEeecCCCcccCC-cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC-CCceeccc
Q 015363          250 SAD----DLRINLWNLEISNQ--SFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSALCDTH  321 (408)
Q Consensus       250 ~~~----d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~  321 (408)
                      .++    ++.|.+||+.+...  ...+       +..+ ...+..++|+ ++ .++++...|+..+||.+. .++..   
T Consensus       287 ~s~~~~~~~~l~~~d~~~~~~~~~~~l-------~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~---  354 (695)
T 2bkl_A          287 LTDEGAPRQRVFEVDPAKPARASWKEI-------VPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPV---  354 (695)
T ss_dssp             EECTTCTTCEEEEEBTTBCSGGGCEEE-------ECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEE---
T ss_pred             EECCCCCCCEEEEEeCCCCCccCCeEE-------ecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCee---
Confidence            442    58999999975432  1222       2222 4457788888 55 788999999988888665 23222   


Q ss_pred             ccccccccCCCCccccccccceeEEEEEccCCCEEEEe----C-CCeEEEEECCCCCCceeeeee
Q 015363          322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR----D-YMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~----~-d~~v~~wd~~~~~~~~~~~~~  381 (408)
                       +.+..+.           .+.|..++++|++..|+..    . .++|++||+.+ ++ ...+..
T Consensus       355 -~~l~~~~-----------~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~-g~-~~~l~~  405 (695)
T 2bkl_A          355 -RTVQLPG-----------VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST-GK-SELWAK  405 (695)
T ss_dssp             -EECCCSS-----------SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT-CC-EEEEEE
T ss_pred             -EEecCCC-----------CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC-Cc-EEEEec
Confidence             2232221           2567788899999876632    2 28999999986 34 344443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.57  E-value=5.5e-14  Score=126.17  Aligned_cols=261  Identities=7%  Similarity=-0.040  Sum_probs=137.3

Q ss_pred             EEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEE
Q 015363           40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (408)
Q Consensus        40 ~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~  119 (408)
                      .+.|+|||++|+.++.++.|.+|++.+++..     .+.....  .+.|..+.+.. ......        .......+.
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~-----~~~~~~~--~~~~~g~~l~~-~~~~~~--------~~~~~~~~~  148 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQ-----VIYTVDE--EWKGYGTWVAN-SDCTKL--------VGIEILKRD  148 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEE-----EEEECCT--TEEEEEEEEEC-TTSSEE--------EEEEEEGGG
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcE-----EEEeccc--ccCCCCCEEEe-ccCCcc--------ccccccccc
Confidence            4789999999999999999999998876421     0000000  00000000000 000000        000000134


Q ss_pred             EeecCCCcEEEEE-----eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc-CCCeeecccccc
Q 015363          120 WCQSANSALYLLS-----TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGERNFGCA  193 (408)
Q Consensus       120 ~~p~~~~~~l~~~-----~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~~~~~~  193 (408)
                      |+|  +++.++.+     ..+..|.+||+.+++...+.....         .+.       .+.|+| +++.+..     
T Consensus       149 ~sp--dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~---------~~~-------~~~~sp~dg~~l~~-----  205 (396)
T 3c5m_A          149 WQP--LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTA---------WLG-------HPIYRPFDDSTVGF-----  205 (396)
T ss_dssp             CCC--CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESS---------CEE-------EEEEETTEEEEEEE-----
T ss_pred             cCC--CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCc---------ccc-------cceECCCCCCEEEE-----
Confidence            544  35555544     466789999999887665543211         122       578899 7775511     


Q ss_pred             cCccccCCCCC----ceeeeceeeeccccccccccceeecccc-ccceEEEEeCCCCCEEEEe-cC-----CeEEEEeCC
Q 015363          194 SNDSSFPPGGV----SSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA-DD-----LRINLWNLE  262 (408)
Q Consensus       194 ~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~-~d-----~~i~iwd~~  262 (408)
                           .+....    ..|.+|+ +...       ..+.+.... ...+..++|+|+|+.|+.+ .+     +.|++||+.
T Consensus       206 -----~~~~~~~~~~~~l~~~d-~~~~-------~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (396)
T 3c5m_A          206 -----CHEGPHDLVDARMWLVN-EDGS-------NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE  272 (396)
T ss_dssp             -----EECSCSSSCSCCCEEEE-TTSC-------CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred             -----EecCCCCCCCceEEEEE-CCCC-------ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence                 111111    3566655 3221       111111211 2357889999999977665 32     449999998


Q ss_pred             CCCceeeEeecCCCcccCCcCCeEEEEEcC-CCCceEEEEe----------------CCCeEEEEEcCCCceeccccccc
Q 015363          263 ISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSS----------------SKGSIRLIDMRQSALCDTHSKLF  325 (408)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~----------------~dg~i~iwd~~~~~~~~~~~~~~  325 (408)
                      ++ ....+..     ...    .. +.|+| +| +++++++                .+..|++||+.+++.     ..+
T Consensus       273 ~g-~~~~l~~-----~~~----~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~l  335 (396)
T 3c5m_A          273 TL-ENEEVMV-----MPP----CS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-----QKL  335 (396)
T ss_dssp             TC-CEEEEEE-----CCS----EE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTTTBC-----CEE
T ss_pred             CC-CeEEeee-----CCC----CC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecccCce-----EEc
Confidence            44 3322211     111    23 89999 99 7777654                347899999987753     233


Q ss_pred             ccccCCCCccccccccceeEEEEEccCCCEEEEeC--CCeEEEEECC
Q 015363          326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDIN  370 (408)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~  370 (408)
                      ..+.... ..+...-...+..++|+|||+.|+.++  ++...+|.++
T Consensus       336 ~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          336 CKHSTSW-DVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             EECCCCC-CCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cCCCCcc-ccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            3331000 000000000245678999999888763  3555555544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.56  E-value=8.2e-13  Score=116.34  Aligned_cols=231  Identities=9%  Similarity=0.124  Sum_probs=140.7

Q ss_pred             cceEEEEECCCCCeEEEeecC---Ce--EEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           36 DIISAIEFDKSGDHLATGDRG---GR--VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~d---g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+.+++|||||++||.++.+   +.  |.+|++.+++.                        ..+..+.          
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~------------------------~~l~~~~----------  104 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS------------------------KKILEAK----------  104 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE------------------------EEEEEES----------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce------------------------EEEEcCC----------
Confidence            568899999999999988754   34  66677665532                        1122222          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCC---------------------------CeEEEEEcCCCcEEEEeccCCCCcccCC
Q 015363          111 IEEKINKIRWCQSANSALYLLSTND---------------------------KTIKLWKVQEKKVKKVFDWNVHPEKAAG  163 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d---------------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~  163 (408)
                        . +..++|+|+  |+.|+.++.+                           ..|.+||+.+++....+... .      
T Consensus       105 --~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~------  172 (347)
T 2gop_A          105 --N-IRSLEWNED--SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-R------  172 (347)
T ss_dssp             --E-EEEEEECTT--SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-T------
T ss_pred             --C-ccceeECCC--CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-C------
Confidence              4 888999654  8888887642                           57899999988762222211 1      


Q ss_pred             CCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCC------c-eeeeceeeeccccccccccceeeccccccce
Q 015363          164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV------S-SLRLPVVVTSQETNLVAGCRRIYAHAHDYHI  236 (408)
Q Consensus       164 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  236 (408)
                         +       ..+.|+|+| .+            +++..+      . ...+|. +.  .    ... +.+ ..+ ..+
T Consensus       173 ---~-------~~~~~spdg-~~------------~~~~~~~~~~~~~~~~~l~~-~d--~----~~~-~~l-~~~-~~~  219 (347)
T 2gop_A          173 ---F-------SSGIWHRDK-IV------------VNVPHREIIPQYFKFWDIYI-WE--D----GKE-EKM-FEK-VSF  219 (347)
T ss_dssp             ---T-------CEEEEETTE-EE------------EEEECCCSSCCSSCCEEEEE-EE--T----TEE-EEE-EEE-ESE
T ss_pred             ---c-------ccccCCCCe-EE------------EEEecccccccccccccEEE-eC--C----Cce-EEe-ccC-cce
Confidence               1       157899999 54            433222      1 445665 33  1    111 121 222 444


Q ss_pred             EEEEeCCCCCEEEEe-cC--------CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEE-EEEcCCCCceEEEEeCCCe
Q 015363          237 NSISNNSDGETFISA-DD--------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITS-AEFHPTHCNMLAYSSSKGS  306 (408)
Q Consensus       237 ~~i~~~~~~~~l~~~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~s~~~dg~  306 (408)
                      ..+  +|+|+.|+.+ .+        ..|.+|| .  +....+       ...+...+.. +.|+ ++  ++++++.++.
T Consensus       220 ~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~--~~~~~l-------~~~~~~~~~~~~~~s-dg--~~~~~~~~~~  284 (347)
T 2gop_A          220 YAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-G--KEVMGI-------LDEVDRGVGQAKIKD-GK--VYFTLFEEGS  284 (347)
T ss_dssp             EEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-S--SCEEES-------STTCCSEEEEEEEET-TE--EEEEEEETTE
T ss_pred             eeE--CCCCCEEEEEEccccCCccccceEEEEC-C--CceEec-------cccCCcccCCccEEc-Cc--EEEEEecCCc
Confidence            444  8999988765 32        3677787 2  333222       3445667776 8999 76  8888889999


Q ss_pred             EEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeE-EEEECCCCCCceeeeeecc
Q 015363          307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTL-KLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v-~~wd~~~~~~~~~~~~~~~  383 (408)
                      ++|| +.+++.     ..+..+            ...|.+++|+|  .+++++ +++.. .+|.++  ++ ...+..|.
T Consensus       285 ~~l~-~~~g~~-----~~~~~~------------~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~-~~~lt~~n  340 (347)
T 2gop_A          285 VNLY-IWDGEI-----KPIAKG------------RHWIMGFDVDE--IVVYLKETATRLRELFTWD--GE-EKQLTDYN  340 (347)
T ss_dssp             EEEE-EESSSE-----EEEECS------------SSEEEEEEESS--SEEEEEECSSSCCEEEEES--SS-EEECCCTT
T ss_pred             EEEE-EcCCce-----EEEecC------------CCeEEeeeeeC--cEEEEEcCCCChHHheEeC--Cc-EEEecccc
Confidence            9999 875432     122222            25789999999  566665 45433 677665  33 44455544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.56  E-value=2.4e-12  Score=109.03  Aligned_cols=237  Identities=7%  Similarity=-0.009  Sum_probs=151.0

Q ss_pred             ceEEEEECCCCCeEE-EeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           37 IISAIEFDKSGDHLA-TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~-sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      ...+++++++|++++ +...++.|.+|+..+....                       .....+.            ..+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-----------------------~~~~~~~------------~~p   69 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-----------------------VLPFNGL------------YQP   69 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-----------------------ECCCCSC------------CSC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-----------------------eEeeCCc------------CCc
Confidence            678999999999777 5567889999986544310                       0001111            347


Q ss_pred             eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (408)
                      .++++.  ++|.++++.. ++.|.+||..+..........        .       ..+..+++.++|...         
T Consensus        70 ~~i~~~--~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~--------~-------~~p~~i~~~~~g~l~---------  122 (270)
T 1rwi_B           70 QGLAVD--GAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDG--------L-------NYPEGLAVDTQGAVY---------  122 (270)
T ss_dssp             CCEEEC--TTCCEEEEET-TTEEEEECTTCSCCEECCCCS--------C-------SSEEEEEECTTCCEE---------
T ss_pred             ceeEEC--CCCCEEEEcC-CCEEEEEeCCCceEeeeecCC--------c-------CCCcceEECCCCCEE---------
Confidence            789995  4577665555 889999998776543221110        0       112267888888754         


Q ss_pred             ccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecC
Q 015363          196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK  274 (408)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  274 (408)
                         ++...++.|..|+ ......       ..........+.+++++++++++++. .++.|.+||..... ....    
T Consensus       123 ---v~~~~~~~i~~~~-~~~~~~-------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-~~~~----  186 (270)
T 1rwi_B          123 ---VADRGNNRVVKLA-AGSKTQ-------TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-QVVL----  186 (270)
T ss_dssp             ---EEEGGGTEEEEEC-TTCCSC-------EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC-EEEC----
T ss_pred             ---EEECCCCEEEEEE-CCCcee-------EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc-eEee----
Confidence               5545566777765 211100       00011222457789999999977777 78899999987433 2211    


Q ss_pred             CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363          275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       275 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                         ...+...+..++++++| .++++...++.|.+||.......     .....           +...+.+++++|+|+
T Consensus       187 ---~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~-----~~~~~-----------~~~~p~~i~~~~~g~  246 (270)
T 1rwi_B          187 ---PFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTST-----VLPFT-----------GLNTPLAVAVDSDRT  246 (270)
T ss_dssp             ---CCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCE-----ECCCC-----------SCSCEEEEEECTTCC
T ss_pred             ---cccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcce-----eeccC-----------CCCCceeEEECCCCC
Confidence               11223567899999999 88888777899999998765321     11100           114588999999999


Q ss_pred             EEEEeC-CCeEEEEECCC
Q 015363          355 HILSRD-YMTLKLWDINM  371 (408)
Q Consensus       355 ~l~s~~-d~~v~~wd~~~  371 (408)
                      ++++.. ++.|+++++..
T Consensus       247 l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          247 VYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             EEEEEGGGTEEEEECCCG
T ss_pred             EEEEECCCCEEEEEcCCC
Confidence            777764 69999999975

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.55  E-value=2.2e-12  Score=112.94  Aligned_cols=253  Identities=9%  Similarity=0.072  Sum_probs=158.8

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      ..|.+++|++++..++..+.++.++.|.-.                          ....+..+.            ..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~------------~~~   47 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE--------------------------PWLEISKKG------------LQL   47 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE--------------------------EEEEEESSC------------CCE
T ss_pred             cccceeeecCCccceeEEeecccCcccccc--------------------------eeEEEeccC------------ccc
Confidence            347788899988777777778888888311                          122344444            457


Q ss_pred             eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (408)
                      .+++|.  ++|.+++++..++.|.+||..+++........        ...+.       .++++++|+.+         
T Consensus        48 ~~~~~~--~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--------~~~~~-------~i~~~~dg~l~---------  101 (333)
T 2dg1_A           48 EGLNFD--RQGQLFLLDVFEGNIFKINPETKEIKRPFVSH--------KANPA-------AIKIHKDGRLF---------  101 (333)
T ss_dssp             EEEEEC--TTSCEEEEETTTCEEEEECTTTCCEEEEEECS--------SSSEE-------EEEECTTSCEE---------
T ss_pred             cCcEEC--CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC--------CCCcc-------eEEECCCCcEE---------
Confidence            899995  55877778888999999999988766543221        11233       68899999865         


Q ss_pred             ccccCCCCC----ceeeeceeeeccccccccccceeec-cccccceEEEEeCCCCCEEEEe-c------CCeEEEEeCCC
Q 015363          196 DSSFPPGGV----SSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA-D------DLRINLWNLEI  263 (408)
Q Consensus       196 ~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~-~------d~~i~iwd~~~  263 (408)
                         ++...+    +.|.+|+ .......      ..+. ..+...+..++++|+++++++. .      .+.|..+|.. 
T Consensus       102 ---v~~~~~~~~~~~i~~~d-~~~~~~~------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~-  170 (333)
T 2dg1_A          102 ---VCYLGDFKSTGGIFAAT-ENGDNLQ------DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-  170 (333)
T ss_dssp             ---EEECTTSSSCCEEEEEC-TTSCSCE------EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-
T ss_pred             ---EEeCCCCCCCceEEEEe-CCCCEEE------EEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC-
Confidence               444444    5788777 3322111      0110 1234568999999999988876 3      2556666655 


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCc-eEEEEeCCCeEEEEEcCC-CceecccccccccccCCCCcccccccc
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                      .+....+        ......+..++|+|++ + ++++.+.++.|.+||+.+ +...    ..+....    ...+.++ 
T Consensus       171 ~~~~~~~--------~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~~~----~~~~~~~-  232 (333)
T 2dg1_A          171 FRTVTPI--------IQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTI----QPFGATI----PYYFTGH-  232 (333)
T ss_dssp             SCCEEEE--------EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEE----EEECCSS-
T ss_pred             CCEEEEe--------ecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcCc----ccccceE----EEecCCC-
Confidence            2222221        1123447889999999 6 445555688999999964 3221    1110000    0000111 


Q ss_pred             ceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecc
Q 015363          342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                      ..+..++++++|+++++.. ++.|.+||.+  ++.+..+..+.
T Consensus       233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~--g~~~~~~~~~~  273 (333)
T 2dg1_A          233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR--GYPIGQILIPG  273 (333)
T ss_dssp             SEEEEEEEBTTCCEEEEEETTTEEEEECTT--SCEEEEEECTT
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEECCC--CCEEEEEEcCC
Confidence            3578899999999877764 5899999983  57777776553

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.52  E-value=2.1e-11  Score=104.13  Aligned_cols=235  Identities=8%  Similarity=0.103  Sum_probs=147.1

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEE-ccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY-MANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~l~~~~~  191 (408)
                      ..+.++++.  +++.++++...++.|.+||.. ++....+......     .+.    ...+..+++ .+++..+     
T Consensus        30 ~~p~~v~~~--~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~-----~~~----~~~p~~i~~~~~~g~l~-----   92 (286)
T 1q7f_A           30 TEPSGVAVN--AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-----DSQ----LLYPNRVAVVRNSGDII-----   92 (286)
T ss_dssp             SCEEEEEEC--TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-----TTC----BSSEEEEEEETTTTEEE-----
T ss_pred             CCCceEEEC--CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCC-----ccc----ccCceEEEEEcCCCeEE-----
Confidence            458889995  457788888889999999987 4444433221100     000    011225677 4666554     


Q ss_pred             cccCccccCCC-CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          192 CASNDSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       192 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                             ++.. .++.|.+|+ ..       ......+...+...+.+++++|+++++++. .++.|.+||.. +. ...
T Consensus        93 -------v~~~~~~~~i~~~d-~~-------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~  155 (286)
T 1q7f_A           93 -------VTERSPTHQIQIYN-QY-------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN-VLH  155 (286)
T ss_dssp             -------EEECGGGCEEEEEC-TT-------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEE
T ss_pred             -------EEcCCCCCEEEEEC-CC-------CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC-EEE
Confidence                   4432 267888877 22       122222222334568899999999988887 78999999975 33 333


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      .+.     ...+...+..++++|++ +++++...++.|++||.... .+    ..+..+          ++...+..+++
T Consensus       156 ~~~-----~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~----~~~~~~----------g~~~~p~~i~~  214 (286)
T 1q7f_A          156 KFG-----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ-YL----RQIGGE----------GITNYPIGVGI  214 (286)
T ss_dssp             EEE-----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC-EE----EEESCT----------TTSCSEEEEEE
T ss_pred             EeC-----CCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCC-EE----EEEccC----------CccCCCcEEEE
Confidence            221     12344568999999999 88888788999999997543 22    223221          11245789999


Q ss_pred             ccCCCEEEEeC-CC-eEEEEECCCCCCceeeeeeccccc--ceEEecCCCeeeeeecee
Q 015363          350 ARNGRHILSRD-YM-TLKLWDINMDSGPVATFQVHEHLR--PKVMHSSKNYFMGLDNIH  404 (408)
Q Consensus       350 spdg~~l~s~~-d~-~v~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~  404 (408)
                      +|+|+++++.. ++ .|.+||.+  ++.+..+..+....  ..+..--++.++..+..+
T Consensus       215 d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~  271 (286)
T 1q7f_A          215 NSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHAQCFDVALMDDGSVVLASKDY  271 (286)
T ss_dssp             CTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCSCEEEEEEETTTEEEEEETTT
T ss_pred             CCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCCcceeEEECCCCcEEEECCCC
Confidence            99999888875 54 99999963  67788887654432  123322344555444433

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.51  E-value=7.2e-12  Score=106.14  Aligned_cols=199  Identities=10%  Similarity=0.039  Sum_probs=137.3

Q ss_pred             CCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCC
Q 015363          125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV  204 (408)
Q Consensus       125 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  204 (408)
                      ++++|++++.|+.|.+||.++++.+..+..+...       .+       ..+.+.|+|+.+            +  +.+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~-------~~-------~~~~~~pdG~il------------v--s~~   55 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGW-------EC-------NSVAATKAGEIL------------F--SYS   55 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTC-------CC-------CEEEECTTSCEE------------E--ECB
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccC-------CC-------cCeEECCCCCEE------------E--eCC
Confidence            4578999999999999999999988877664310       01       157888999876            4  345


Q ss_pred             ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c-CCeEEEEeCCCCCceeeEeecCCCcccCCc
Q 015363          205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLT  282 (408)
Q Consensus       205 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  282 (408)
                      +.|..|| .       .++.+..+.......+.++.+.++|+++++. . ++.|..+|.. + +.+..+.+.. ....+.
T Consensus        56 ~~V~~~d-~-------~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-G-k~l~~~~~~~-~~~~~~  124 (276)
T 3no2_A           56 KGAKMIT-R-------DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-G-EVLSKTEFET-GIERPH  124 (276)
T ss_dssp             SEEEEEC-T-------TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-S-CEEEEEEECC-SCSSGG
T ss_pred             CCEEEEC-C-------CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-C-CEEEEEeccC-CCCccc
Confidence            6677776 2       1222333312223468889999999999987 5 7788878764 4 3333333221 111222


Q ss_pred             CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCC-
Q 015363          283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-  361 (408)
Q Consensus       283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-  361 (408)
                      .....+++.++| +++++...++.|..||.. ++.+    ..+...             ..+..+.+.++|..|+++.+ 
T Consensus       125 ~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~-G~~~----w~~~~~-------------~~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          125 AQFRQINKNKKG-NYLVPLFATSEVREIAPN-GQLL----NSVKLS-------------GTPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             GSCSCCEECTTS-CEEEEETTTTEEEEECTT-SCEE----EEEECS-------------SCCCEEEECTTSCEEEECBTT
T ss_pred             ccccCceECCCC-CEEEEecCCCEEEEECCC-CCEE----EEEECC-------------CCccceeEcCCCCEEEEeCCC
Confidence            344567889999 899999999999999998 7654    344332             23455777899999998865 


Q ss_pred             CeEEEEECCCCCCceeeeeec
Q 015363          362 MTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       362 ~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      +.|..+|..+ |+.+..+..+
T Consensus       186 ~~v~~~d~~t-G~~~w~~~~~  205 (276)
T 3no2_A          186 HCFVQLNLES-NRIVRRVNAN  205 (276)
T ss_dssp             SEEEEECTTT-CCEEEEEEGG
T ss_pred             CeEEEEeCcC-CcEEEEecCC
Confidence            7899999987 7888888754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.51  E-value=2.1e-11  Score=105.67  Aligned_cols=247  Identities=8%  Similarity=0.052  Sum_probs=149.8

Q ss_pred             cceEEEEECCCCCeEEE-------eecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeee--eccCCcccccc
Q 015363           36 DIISAIEFDKSGDHLAT-------GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE--FQSHEPEFDYL  106 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~s-------g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~h~~~~~~~  106 (408)
                      ....+++|+++|.++++       +..++.|.+|+..+++..                     ....  ..++.      
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~---------------------~~~~~~~~~~~------   70 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT---------------------VICKPEVNGYG------   70 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE---------------------EEECCEETTEE------
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE---------------------EEEecccCCCC------
Confidence            35679999999998888       678899999997665421                     0000  01122      


Q ss_pred             cccccccceeEEEEeecCC-CcEEEEEeCCCeEEEEEcCCCcEEEE-eccCCCCcccCCCCCeEeecCCceeeEEccCCC
Q 015363          107 KSLEIEEKINKIRWCQSAN-SALYLLSTNDKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (408)
Q Consensus       107 ~~~~~~~~v~~v~~~p~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  184 (408)
                            ..+.++++.  ++ |. +..++..+.|.+||.. ++.... .......    +.       ..+..+++.++|.
T Consensus        71 ------~~~~~i~~~--~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~----~~-------~~~~~i~~d~~g~  129 (314)
T 1pjx_A           71 ------GIPAGCQCD--RDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKDSEGR----RM-------QGCNDCAFDYEGN  129 (314)
T ss_dssp             ------CCEEEEEEC--SSSSE-EEEEETTTEEEEEETT-SCEEECCSBCTTSC----BC-------BCCCEEEECTTSC
T ss_pred             ------CCCceEEEe--cCCCc-EEEEECCCCEEEEeCC-CCEEEEEeccCCCc----cc-------cCCcCEEECCCCC
Confidence                  458889984  55 54 4444445579999998 765443 2211000    00       1122678888887


Q ss_pred             eeecccccccCccccCCCCC---------------ceeeeceeeeccccccccccceeeccccccceEEEEeC----CCC
Q 015363          185 CGERNFGCASNDSSFPPGGV---------------SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN----SDG  245 (408)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~  245 (408)
                      ..            ++...+               +.|..++ ..       ......  ..+......++++    |++
T Consensus       130 l~------------v~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-------g~~~~~--~~~~~~~~~i~~~~~~d~dg  187 (314)
T 1pjx_A          130 LW------------ITAPAGEVAPADYTRSMQEKFGSIYCFT-TD-------GQMIQV--DTAFQFPNGIAVRHMNDGRP  187 (314)
T ss_dssp             EE------------EEECBCBCTTSCCCBTTSSSCEEEEEEC-TT-------SCEEEE--EEEESSEEEEEEEECTTSCE
T ss_pred             EE------------EEecCcccccccccccccCCCCeEEEEC-CC-------CCEEEe--ccCCCCcceEEEecccCCCC
Confidence            64            332222               4455444 11       111111  1222346788999    999


Q ss_pred             CEEEEe--cCCeEEEEeCCCCCcee--eEeecCCCcccCCc-CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecc
Q 015363          246 ETFISA--DDLRINLWNLEISNQSF--NIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT  320 (408)
Q Consensus       246 ~~l~~~--~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  320 (408)
                      +.+..+  .++.|.+||....+...  ..+.    .+..+. ..+..++++++| +++++...++.|.+||..+++..  
T Consensus       188 ~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~----~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~--  260 (314)
T 1pjx_A          188 YQLIVAETPTKKLWSYDIKGPAKIENKKVWG----HIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPK--  260 (314)
T ss_dssp             EEEEEEETTTTEEEEEEEEETTEEEEEEEEE----ECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCS--
T ss_pred             CEEEEEECCCCeEEEEECCCCCccccceEEE----ECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEe--
Confidence            765544  68999999986222211  1110    123333 557889999999 88888778899999998866432  


Q ss_pred             cccccccccCCCCccccccccceeEEEEEccCCCEEEEe-C-CCeEEEEECCCCC
Q 015363          321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDINMDS  373 (408)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~-d~~v~~wd~~~~~  373 (408)
                        ..+..+            ...+.+++|+|+|+.|+.+ . ++.|..|++...+
T Consensus       261 --~~~~~~------------~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          261 --MRIRCP------------FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             --EEEECS------------SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             --EEEeCC------------CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence              223222            2468999999999966554 3 4799999987643

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.51  E-value=2.5e-10  Score=97.99  Aligned_cols=239  Identities=8%  Similarity=-0.018  Sum_probs=155.3

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      +...+.+++++++|+++++...++.|.+|+.. +...                     . .....+.            .
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~---------------------~-~~~~~~~------------~   57 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT---------------------E-YPLPTPD------------A   57 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE---------------------E-EECSSTT------------C
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE---------------------E-ecCCccc------------C
Confidence            34678999999999977776667899999976 3210                     0 0011112            4


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      .+.++++.  ++|.++++...++.|..|+.. ++.... .....      ...+       ..+++.++|...       
T Consensus        58 ~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~-~~~~~------~~~~-------~~i~~~~~g~l~-------  113 (299)
T 2z2n_A           58 KVMCLTIS--SDGEVWFTENAANKIGRITKK-GIIKEY-TLPNP------DSAP-------YGITEGPNGDIW-------  113 (299)
T ss_dssp             CEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEEEE-ECSST------TCCE-------EEEEECTTSCEE-------
T ss_pred             ceeeEEEC--CCCCEEEeCCCCCeEEEECCC-CcEEEE-eCCCc------CCCc-------eeeEECCCCCEE-------
Confidence            58889985  558777776778899999986 433222 21100      1112       267788888765       


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                           ++...++.|..|+ . ...      ............+..++++++++++++. .++.|..||.. .. .... .
T Consensus       114 -----v~~~~~~~i~~~d-~-~g~------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~-~  177 (299)
T 2z2n_A          114 -----FTEMNGNRIGRIT-D-DGK------IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITES-GD-ITEF-K  177 (299)
T ss_dssp             -----EEETTTTEEEEEC-T-TCC------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEE-E
T ss_pred             -----EEecCCceEEEEC-C-CCC------EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCC-Cc-EEEe-e
Confidence                 5555567788777 3 111      1111112234568899999999888887 68899999983 33 2221 1


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  352 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd  352 (408)
                           .......+..+++++++ .++++...++.|.+||. ++...     .+...          .+...+.+++++++
T Consensus       178 -----~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~----------~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          178 -----IPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGEIT-----EFKIP----------TPNARPHAITAGAG  235 (299)
T ss_dssp             -----CSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEECS----------STTCCEEEEEECST
T ss_pred             -----CCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCcEE-----EEECC----------CCCCCceeEEECCC
Confidence                 22334567899999999 77777666889999998 65432     11111          11246889999999


Q ss_pred             CCEEEEe-CCCeEEEEEC
Q 015363          353 GRHILSR-DYMTLKLWDI  369 (408)
Q Consensus       353 g~~l~s~-~d~~v~~wd~  369 (408)
                      |++.++. .++.|..||.
T Consensus       236 g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          236 IDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             TCEEEEETTTTEEEEEET
T ss_pred             CCEEEeccCCceEEEECC
Confidence            9977776 4589999998

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.50  E-value=3.5e-11  Score=104.89  Aligned_cols=251  Identities=7%  Similarity=-0.002  Sum_probs=154.3

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      +....+.+. +++++++...++.|.+||..+++.                       +..+.. .            ...
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-----------------------~~~i~~-~------------~~p   86 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-----------------------VGRITG-F------------TSP   86 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEEC-C------------SSE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-----------------------EEEcCC-C------------CCC
Confidence            345667774 355566666789999999887753                       223321 1            347


Q ss_pred             eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (408)
                      ..++++|+  +.++++...++.|.+||..+++..............          ..+..+++ .+++..         
T Consensus        87 ~~i~~~~~--g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~----------~~p~~i~~-~~~~ly---------  144 (328)
T 3dsm_A           87 RYIHFLSD--EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMES----------GSTEQMVQ-YGKYVY---------  144 (328)
T ss_dssp             EEEEEEET--TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTT----------CBCCCEEE-ETTEEE---------
T ss_pred             cEEEEeCC--CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccC----------CCcceEEE-ECCEEE---------
Confidence            88999765  644444448999999999999877655543200000          00113444 333322         


Q ss_pred             ccccCCC-CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC----------CeEEEEeCCC
Q 015363          196 DSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----------LRINLWNLEI  263 (408)
Q Consensus       196 ~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d----------~~i~iwd~~~  263 (408)
                         ++.. .++.|.++| .....      ....+ .. ......++++|+|++++++ .+          +.|.++|..+
T Consensus       145 ---v~~~~~~~~v~viD-~~t~~------~~~~i-~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t  212 (328)
T 3dsm_A          145 ---VNCWSYQNRILKID-TETDK------VVDEL-TI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET  212 (328)
T ss_dssp             ---EEECTTCCEEEEEE-TTTTE------EEEEE-EC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT
T ss_pred             ---EEcCCCCCEEEEEE-CCCCe------EEEEE-Ec-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC
Confidence               3332 478899888 43211      11121 11 1235678899999988877 44          7899999984


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                       .+....+.+     . .......++++|++ ..|.++..  .|.+||..+++....  ..+...            ...
T Consensus       213 -~~v~~~~~~-----~-~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~--~~~~~~------------~~~  268 (328)
T 3dsm_A          213 -FTVEKQFKF-----K-LGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPVR--PFLEFR------------DTK  268 (328)
T ss_dssp             -TEEEEEEEC-----C-TTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCSS--CSBCCC------------SSC
T ss_pred             -CeEEEEEec-----C-CCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceeee--eeecCC------------CCc
Confidence             444433221     1 12357899999998 66766544  899999988764211  111110            245


Q ss_pred             eEEEEEcc-CCCEEEEe----C-CCeEEEEECCCCCCceeeeeecc
Q 015363          344 ISDIKFAR-NGRHILSR----D-YMTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       344 i~~~~~sp-dg~~l~s~----~-d~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                      ...++++| ++++.++.    . ++.|.+||.+  ++.++++..-.
T Consensus       269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~--g~~~~~i~~G~  312 (328)
T 3dsm_A          269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ--GKLIDEFYVGI  312 (328)
T ss_dssp             EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT--CCEEEEEEEEE
T ss_pred             eEEEEEcCCCCeEEEEcccccccCCEEEEECCC--CCEEEEEEecc
Confidence            78899999 56666665    4 4899999996  68888886543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.50  E-value=1.1e-11  Score=104.91  Aligned_cols=250  Identities=8%  Similarity=0.070  Sum_probs=159.1

Q ss_pred             CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCC
Q 015363           46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN  125 (408)
Q Consensus        46 ~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~  125 (408)
                      .+++|++++.++.|.+||.++++.                       +..+..+..           ..+.++.+.|  +
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~-----------------------~w~~~~~~~-----------~~~~~~~~~p--d   47 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEI-----------------------VWEYPLEKG-----------WECNSVAATK--A   47 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEE-----------------------EEEEECCTT-----------CCCCEEEECT--T
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeE-----------------------EEEeCCCcc-----------CCCcCeEECC--C
Confidence            467899999999999999877753                       333443321           2377888864  5


Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCC-C
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG-V  204 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~  204 (408)
                      |++++  +.++.|..||. +++.+..+......       .+.       .+.+.++|+.+            ++.+. +
T Consensus        48 G~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~-------~~~-------~~~~~~dG~~l------------v~~~~~~   98 (276)
T 3no2_A           48 GEILF--SYSKGAKMITR-DGRELWNIAAPAGC-------EMQ-------TARILPDGNAL------------VAWCGHP   98 (276)
T ss_dssp             SCEEE--ECBSEEEEECT-TSCEEEEEECCTTC-------EEE-------EEEECTTSCEE------------EEEESTT
T ss_pred             CCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc-------ccc-------ccEECCCCCEE------------EEecCCC
Confidence            87777  45788999999 78777766653111       122       45677788776            44333 4


Q ss_pred             ceeeeceeeeccccccccccc-eeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCc
Q 015363          205 SSLRLPVVVTSQETNLVAGCR-RIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT  282 (408)
Q Consensus       205 ~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  282 (408)
                      +.+..++ .   +.....+.. ......+......+++.++|+++++. .++.|..||.+ ++...+. .       . .
T Consensus        99 ~~v~~vd-~---~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~-~-------~-~  164 (276)
T 3no2_A           99 STILEVN-M---KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSV-K-------L-S  164 (276)
T ss_dssp             EEEEEEC-T---TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEE-E-------C-S
T ss_pred             CEEEEEe-C---CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEE-E-------C-C
Confidence            4444433 1   111100000 00001122334556789999999998 89999999998 6554442 1       1 1


Q ss_pred             CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCC
Q 015363          283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM  362 (408)
Q Consensus       283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~  362 (408)
                      ..+.++...+++ ++++++..+++|..+|..+++.+    ..+.....+.      .....+..+...++|..+++...|
T Consensus       165 ~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~~~----w~~~~~~~~~------~~l~~~~~~~~~~~G~i~v~~~~g  233 (276)
T 3no2_A          165 GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNRIV----RRVNANDIEG------VQLFFVAQLFPLQNGGLYICNWQG  233 (276)
T ss_dssp             SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCCEE----EEEEGGGSBS------CCCSEEEEEEECTTSCEEEEEECT
T ss_pred             CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCcEE----EEecCCCCCC------ccccccccceEcCCCCEEEEeccC
Confidence            334567888999 88888888889999999988765    3333221000      001357888999999999887422


Q ss_pred             ---------eEEEEECCCCCCceeeeeecccc
Q 015363          363 ---------TLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       363 ---------~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                               ..+++.++..++.+-.+..+...
T Consensus       234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~  265 (276)
T 3no2_A          234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF  265 (276)
T ss_dssp             TCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred             ccccccccCCceEEEECCCCCEEEEecCcccc
Confidence                     44677776568888888776664

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.48  E-value=2.9e-11  Score=105.58  Aligned_cols=237  Identities=12%  Similarity=0.108  Sum_probs=148.6

Q ss_pred             cceeEEEEeecCCCcEEEEEeCC------------------------CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeE
Q 015363          113 EKINKIRWCQSANSALYLLSTND------------------------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF  168 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d------------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  168 (408)
                      ..+.+|++.  ++|.++++...+                        ++|.+||..+++.........       .    
T Consensus        24 ~~v~~va~d--~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-------~----   90 (329)
T 3fvz_A           24 GQVSGVALD--SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL-------F----   90 (329)
T ss_dssp             SCEEEEEEC--TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT-------C----
T ss_pred             CCceEEEEC--CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc-------c----
Confidence            559999995  458888877766                        479999998888765433111       0    


Q ss_pred             eecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeec--------cccccceEEEE
Q 015363          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA--------HAHDYHINSIS  240 (408)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~i~  240 (408)
                         ..+..+++.++|+.+            ++...++.|+.|+ ......     ....+-        ..+......++
T Consensus        91 ---~~p~gia~d~~g~l~------------v~d~~~~~v~~~~-~~g~~~-----~~~~~~~~~~~g~~~~~~~~P~~ia  149 (329)
T 3fvz_A           91 ---YLPHGLSIDTDGNYW------------VTDVALHQVFKLD-PHSKEG-----PLLILGRSMQPGSDQNHFCQPTDVA  149 (329)
T ss_dssp             ---SSEEEEEECTTSCEE------------EEETTTTEEEEEC-TTCSSC-----CSEEESBTTBCCCSTTCCSSEEEEE
T ss_pred             ---CCceEEEECCCCCEE------------EEECCCCEEEEEe-CCCCeE-----EEEEecccCCCCCCccccCCCcEEE
Confidence               122368899999865            7777788899888 332210     111110        23334688999


Q ss_pred             eCC-CCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCc---ccCCcCCeEEEEEcCC-CCceEEEEeCCCeEEEEEcC
Q 015363          241 NNS-DGETFISA--DDLRINLWNLEISNQSFNIVDVKPAN---MEDLTEVITSAEFHPT-HCNMLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       241 ~~~-~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~-~~~~l~s~~~dg~i~iwd~~  313 (408)
                      ++| ++.++++.  .++.|++||.. + .....+......   ...+......++++|+ + .++++...+++|++||..
T Consensus       150 ~~~~~g~lyv~d~~~~~~I~~~~~~-g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g-~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          150 VEPSTGAVFVSDGYCNSRIVQFSPS-G-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-QLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             ECTTTCCEEEEECSSCCEEEEECTT-S-CEEEEECEECCSSSCCTTEESCEEEEEEETTTT-EEEEEETTTTEEEEEETT
T ss_pred             EeCCCCeEEEEeCCCCCeEEEEcCC-C-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCC-EEEEEECCCCEEEEEECC
Confidence            999 78888876  48999999954 3 333332110000   0123345789999999 6 888888889999999998


Q ss_pred             CCceecccccccccccCCCCccccccccceeEEEEEcc------CCCEEEEeC-CCeEEEEECCCCCCceeeee---ecc
Q 015363          314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR------NGRHILSRD-YMTLKLWDINMDSGPVATFQ---VHE  383 (408)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp------dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~---~~~  383 (408)
                      +++.+    ..+...          .+...+..++|+|      +|+..++.. +..|++||+.+ ++.+..+.   ++.
T Consensus       227 ~G~~~----~~~~~~----------~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~  291 (329)
T 3fvz_A          227 TKEFV----REIKHA----------SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKHF  291 (329)
T ss_dssp             TCCEE----EEECCT----------TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSCC
T ss_pred             CCcEE----EEEecc----------ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCcc
Confidence            77654    333221          1124678899999      333222222 25899999987 78888774   333


Q ss_pred             cccceEEecCCCeeeeee
Q 015363          384 HLRPKVMHSSKNYFMGLD  401 (408)
Q Consensus       384 ~~~~~~~~~~~~~~~~~d  401 (408)
                      .....+..--++.++..|
T Consensus       292 ~~p~~ia~~~dG~lyvad  309 (329)
T 3fvz_A          292 DMPHDIVASEDGTVYIGD  309 (329)
T ss_dssp             SSEEEEEECTTSEEEEEE
T ss_pred             CCeeEEEECCCCCEEEEE
Confidence            333344433344444443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.46  E-value=9.3e-12  Score=109.54  Aligned_cols=240  Identities=9%  Similarity=-0.001  Sum_probs=140.4

Q ss_pred             eeccceEEEEECCCCCeEEEee---------cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGD---------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF  103 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  103 (408)
                      .....+..+++  ||+++|...         .++.|.+|++.+++..                        .+       
T Consensus        12 ~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~------------------------~l-------   58 (347)
T 2gop_A           12 AKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR------------------------FI-------   58 (347)
T ss_dssp             CCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE------------------------EE-------
T ss_pred             eeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE------------------------Ec-------
Confidence            34456778888  898887643         3567889998766421                        11       


Q ss_pred             ccccccccccceeEEEEeecCCCcEEEEEeCC---C--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeE
Q 015363          104 DYLKSLEIEEKINKIRWCQSANSALYLLSTND---K--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS  178 (408)
Q Consensus       104 ~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d---~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (408)
                               ..+..++|+|+  |++|+.++.+   +  .|.+|++.+++.........          +.       .+.
T Consensus        59 ---------~~~~~~~~SpD--g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~----------~~-------~~~  110 (347)
T 2gop_A           59 ---------ENATMPRISPD--GKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN----------IR-------SLE  110 (347)
T ss_dssp             ---------ESCEEEEECTT--SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE----------EE-------EEE
T ss_pred             ---------ccCCCeEECCC--CCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC----------cc-------cee
Confidence                     12778999755  8888887643   3  47788888887665544321          22       688


Q ss_pred             EccCCCeeeccccccc--------CccccC--C-----CCCceeeeceeeeccccccccccceeeccccccceEEEEeCC
Q 015363          179 YMANGGCGERNFGCAS--------NDSSFP--P-----GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS  243 (408)
Q Consensus       179 ~~~~~~~l~~~~~~~~--------~~~~~~--~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  243 (408)
                      |+|+|+.+........        ..+.+.  +     .....|.+|+ +..      +...+.+ .. . .+..++|+|
T Consensus       111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d-~~~------~~~~~~l-~~-~-~~~~~~~sp  180 (347)
T 2gop_A          111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD-TES------EEVIEEF-EK-P-RFSSGIWHR  180 (347)
T ss_dssp             ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEE-TTT------TEEEEEE-EE-E-TTCEEEEET
T ss_pred             ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE-CCC------CeEEeee-cC-C-CcccccCCC
Confidence            9999988733221000        000000  0     1135677777 322      1111222 22 2 677899999


Q ss_pred             CCCEEEEe-cC------C-eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC--------CeE
Q 015363          244 DGETFISA-DD------L-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------GSI  307 (408)
Q Consensus       244 ~~~~l~~~-~d------~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--------g~i  307 (408)
                      +| +++++ .+      . ...+|.+. .+....+        ..+ ..+..+  +|+| +.|+.++.+        ..|
T Consensus       181 dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l--------~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l  246 (347)
T 2gop_A          181 DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKM--------FEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKL  246 (347)
T ss_dssp             TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEE--------EEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEE
T ss_pred             Ce-EEEEEecccccccccccccEEEeC-CCceEEe--------ccC-cceeeE--CCCC-CEEEEEEccccCCccccceE
Confidence            99 77766 33      2 44555555 4443332        223 344444  9999 777766643        468


Q ss_pred             EEEEcCCCceecccccccccccCCCCccccccccceeEE-EEEccCCCEEEEeC-CCeEEEEECCCCCCceeee
Q 015363          308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHILSRD-YMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~  379 (408)
                      .+||  +++..    .....+            ...+.. +.|+ |+ ++++++ ++.++|| +++ ++....+
T Consensus       247 ~~~d--~~~~~----~l~~~~------------~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~-g~~~~~~  298 (347)
T 2gop_A          247 YIYD--GKEVM----GILDEV------------DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD-GEIKPIA  298 (347)
T ss_dssp             EEEC--SSCEE----ESSTTC------------CSEEEEEEEET-TE-EEEEEEETTEEEEE-EES-SSEEEEE
T ss_pred             EEEC--CCceE----eccccC------------CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC-CceEEEe
Confidence            8888  44321    222222            256776 8999 88 777775 6899999 884 5554433

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.45  E-value=4.3e-10  Score=104.64  Aligned_cols=262  Identities=12%  Similarity=0.018  Sum_probs=157.8

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeC--CCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ....+..+.|+|||+++++++.++.|.+||+.  +.+                       .+..+...            
T Consensus       195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-----------------------~v~~i~~G------------  239 (567)
T 1qks_A          195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-----------------------TVAEIKIG------------  239 (567)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-----------------------EEEEEECC------------
T ss_pred             CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-----------------------EeEEEecC------------
Confidence            34456799999999999999999999999985  332                       12233222            


Q ss_pred             ccceeEEEEee--cCCCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCCc---ccCCCCCeEeecCCceeeEEccCCCe
Q 015363          112 EEKINKIRWCQ--SANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPE---KAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       112 ~~~v~~v~~~p--~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                       .....++|+|  .++|++++++. .+++|.++|..+.+.+..........   ...+...+.       .+..++++..
T Consensus       240 -~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva-------~i~~s~~~~~  311 (567)
T 1qks_A          240 -SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA-------AILASHYRPE  311 (567)
T ss_dssp             -SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE-------EEEECSSSSE
T ss_pred             -CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE-------EEEEcCCCCE
Confidence             2367899962  13588877765 56999999999988877665432110   000111121       3445555443


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCC
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI  263 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~  263 (408)
                      +           ++.....+.|.++| ....+...    ...  .........+.|+|++++|+++  .++.|.++|+.+
T Consensus       312 ~-----------vv~~~~~g~v~~vd-~~~~~~~~----v~~--i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t  373 (567)
T 1qks_A          312 F-----------IVNVKETGKILLVD-YTDLNNLK----TTE--ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  373 (567)
T ss_dssp             E-----------EEEETTTTEEEEEE-TTCSSEEE----EEE--EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             E-----------EEEecCCCeEEEEe-cCCCccce----eee--eeccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence            2           35556678888877 32211100    011  1122446688999999998776  689999999994


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe-CCCeEEEEEcCCCceec---ccccccccccCCCCcccccc
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCD---THSKLFEEQEAPGTRSFFTE  339 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  339 (408)
                       .+....+++-  ....|.+.-..+ ++|++..+++++. .++.|.++|..+.+...   +.++.+....          
T Consensus       374 -~kl~~~i~vg--g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g----------  439 (567)
T 1qks_A          374 -GKLVAIEDTG--GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG----------  439 (567)
T ss_dssp             -TEEEEEEECS--SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC----------
T ss_pred             -CcEEEEEecc--CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC----------
Confidence             4454444320  122343321222 6888535666654 46899999998732100   1113333221          


Q ss_pred             ccceeEEEEEccCCCEEEEeC--------CCeEEEEECCCC
Q 015363          340 IIASISDIKFARNGRHILSRD--------YMTLKLWDINMD  372 (408)
Q Consensus       340 h~~~i~~~~~spdg~~l~s~~--------d~~v~~wd~~~~  372 (408)
                        ..-..+..+|++++|....        ..+|.++|+.+.
T Consensus       440 --~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          440 --GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             --SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             --CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence              1223467899999998864        259999999863

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.45  E-value=5.5e-11  Score=115.06  Aligned_cols=216  Identities=13%  Similarity=0.075  Sum_probs=131.4

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCC-----eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          113 EKINKIRWCQSANSALYLLSTNDK-----TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                      ..+..++|+|  ||++||.+..++     .|++||+.+++..........                ...+.|+|||+.+ 
T Consensus       125 ~~~~~~~~SP--Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~----------------~~~~~wspDg~~l-  185 (710)
T 2xdw_A          125 VALRGYAFSE--DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK----------------FSCMAWTHDGKGM-  185 (710)
T ss_dssp             EEEEEEEECT--TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC----------------SCCEEECTTSSEE-
T ss_pred             EEEEEEEECC--CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcc----------------cceEEEEeCCCEE-
Confidence            3588899975  488998876433     899999999987653221110                0158999999987 


Q ss_pred             cccccccCccccCCCCC----------------ceeeeceeeeccccccccccceee-ccccccceEEEEeCCCCCEEEE
Q 015363          188 RNFGCASNDSSFPPGGV----------------SSLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFIS  250 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~----------------~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~  250 (408)
                                 +.+..+                ..|++|+ +.....    .....+ ...+...+..+.|+|||++|+.
T Consensus       186 -----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-l~t~~~----~~~~v~~~~~~~~~~~~~~~SpDg~~l~~  249 (710)
T 2xdw_A          186 -----------FYNAYPQQDGKSDGTETSTNLHQKLYYHV-LGTDQS----EDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (710)
T ss_dssp             -----------EEEECCCCSSCCSSSCCCCCCCCEEEEEE-TTSCGG----GCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             -----------EEEEECCccccccccccccCCCCEEEEEE-CCCCcc----cceEEeccCCCCeEEEEEEEcCCCCEEEE
Confidence                       333222                3377777 422110    001111 1224455788999999999887


Q ss_pred             e-c-----CCeEEEEeCCC------CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC----CeEEEEEcCC
Q 015363          251 A-D-----DLRINLWNLEI------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQ  314 (408)
Q Consensus       251 ~-~-----d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----g~i~iwd~~~  314 (408)
                      + .     +..|++||+..      +......       +..+...+.. .|+|+| ..|+..+.+    +.|.+||+.+
T Consensus       250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-------l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~  320 (710)
T 2xdw_A          250 SIREGCDPVNRLWYCDLQQESNGITGILKWVK-------LIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTD  320 (710)
T ss_dssp             EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE-------EECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTS
T ss_pred             EEEccCCCccEEEEEECcccccccCCccceEE-------eeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCC
Confidence            5 3     57899999985      2212222       2334444444 588998 555555442    3699999987


Q ss_pred             CceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CC--eEEEEECCCCCCceeeeeecccc
Q 015363          315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM--TLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~--~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                      +...  ..+.+..+..          ...+..++|++++.++++.. ++  .|.+|++.+ ++.++.+..+.+.
T Consensus       321 ~~~~--~~~~l~~~~~----------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~  381 (710)
T 2xdw_A          321 PEES--KWKVLVPEHE----------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGS  381 (710)
T ss_dssp             CCGG--GCEEEECCCS----------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSE
T ss_pred             CCcc--cceeccCCCC----------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCce
Confidence            6310  1123333310          12678899997777777774 55  566777755 6777777766443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.44  E-value=1.8e-11  Score=108.21  Aligned_cols=229  Identities=10%  Similarity=0.055  Sum_probs=133.9

Q ss_pred             cceEEEEECCCCCeEEEeec--CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeee-eccCCcccccccccccc
Q 015363           36 DIISAIEFDKSGDHLATGDR--GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE-FQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~h~~~~~~~~~~~~~  112 (408)
                      .....++|+|||++|+++..  ++.|.+||+.+++.                       +.. +....            
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~-----------------------~~~~i~~~~------------  152 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY-----------------------VEDVTAAAG------------  152 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE-----------------------EEEEGGGTT------------
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE-----------------------EEEEecCCC------------
Confidence            45667999999999998874  57999999887642                       222 21111            


Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                        ...+.+.|.. ...+++.+.||.+.+|+... ++.........          ++.....+..+...+++..+     
T Consensus       153 --~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~-----  214 (361)
T 2oiz_A          153 --CWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQ----------MFSVKDDPIFIAPALDKDKA-----  214 (361)
T ss_dssp             --EEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCC----------CSCTTTSCBCSCCEECSSEE-----
T ss_pred             --cceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccc----------eEcCCCCceEEEecccCCEE-----
Confidence              1224455442 25788889999999999865 55442211000          00000011123345555443     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceee-----ccc-cccceEEEEeCCCCCEEEEe-c-----------C
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-----AHA-HDYHINSISNNSDGETFISA-D-----------D  253 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~v~~i~~~~~~~~l~~~-~-----------d  253 (408)
                             +..+.++.+.++| +........ ......     ..+ .......++++|+++.+.++ .           .
T Consensus       215 -------~~~~~~~~v~v~d-~~~~~~~~~-~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~  285 (361)
T 2oiz_A          215 -------HFVSYYGNVYSAD-FSGDEVKVD-GPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA  285 (361)
T ss_dssp             -------EEEBTTSEEEEEE-CSSSSCEEE-EEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred             -------EEEeCCCeEEEEE-ecCCCceec-ccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence                   3334567788877 432111000 000000     000 00111236899998877765 3           3


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC--ceecccccccccccCC
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS--ALCDTHSKLFEEQEAP  331 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~  331 (408)
                      +.|.+||+.+ .+.+..       +..+.  +.+++|+|+| ++|++++. +.|.+||..++  +.+    ..+...   
T Consensus       286 ~~v~viD~~t-~~~v~~-------i~~~~--p~~ia~spdg-~~l~v~n~-~~v~v~D~~t~~l~~~----~~i~~~---  346 (361)
T 2oiz_A          286 AEIWVMDTKT-KQRVAR-------IPGRD--ALSMTIDQQR-NLMLTLDG-GNVNVYDISQPEPKLL----RTIEGA---  346 (361)
T ss_dssp             SEEEEEETTT-TEEEEE-------EECTT--CCEEEEETTT-TEEEEECS-SCEEEEECSSSSCEEE----EEETTS---
T ss_pred             ceEEEEECCC-CcEEEE-------EecCC--eeEEEECCCC-CEEEEeCC-CeEEEEECCCCcceee----EEeccC---
Confidence            4899999984 444444       23334  7899999999 78887776 99999999998  654    343222   


Q ss_pred             CCccccccccceeEEEEEccCCC
Q 015363          332 GTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       332 ~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                               ......++++|+|+
T Consensus       347 ---------G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          347 ---------AEASLQVQFHPVGG  360 (361)
T ss_dssp             ---------CSSEEEEEECCCSC
T ss_pred             ---------CCCcEEEEecCCCC
Confidence                     23567899999985

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.43  E-value=1.7e-10  Score=107.32  Aligned_cols=250  Identities=10%  Similarity=0.088  Sum_probs=153.1

Q ss_pred             CCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecC
Q 015363           45 KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA  124 (408)
Q Consensus        45 ~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~  124 (408)
                      |.+.++++...++.|.++|..+++.                       +..+...             ..+..+.|+|  
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v-----------------------~~~i~~g-------------~~p~~v~~Sp--  206 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEI-----------------------KTVLDTG-------------YAVHISRLSA--  206 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCE-----------------------EEEEECS-------------SCEEEEEECT--
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeE-----------------------EEEEeCC-------------CCccceEECC--
Confidence            4455777778889999999887753                       2233222             2367889965  


Q ss_pred             CCcEEEEEeCCCeEEEEEcC--CCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEc----cCCCeeecccccccCccc
Q 015363          125 NSALYLLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM----ANGGCGERNFGCASNDSS  198 (408)
Q Consensus       125 ~~~~l~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~  198 (408)
                      +|+++++++.|+.|.+||+.  +.+....+....                .+..++++    |+|+.+           +
T Consensus       207 DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~----------------~P~~ia~s~~~~pDGk~l-----------~  259 (567)
T 1qks_A          207 SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS----------------EARSIETSKMEGWEDKYA-----------I  259 (567)
T ss_dssp             TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS----------------EEEEEEECCSTTCTTTEE-----------E
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC----------------CCceeEEccccCCCCCEE-----------E
Confidence            58899999999999999995  666554433321                12268899    699987           2


Q ss_pred             cCCCCCceeeeceeeeccccccccccceeecc---cc-ccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEee
Q 015363          199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAH---AH-DYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~  272 (408)
                      ++...++.|.++| ....+..........-..   .| ...+..+..++++..++..  .+|.|.++|...... ..+..
T Consensus       260 v~n~~~~~v~ViD-~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-~~v~~  337 (567)
T 1qks_A          260 AGAYWPPQYVIMD-GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-LKTTE  337 (567)
T ss_dssp             EEEEETTEEEEEE-TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-EEEEE
T ss_pred             EEEccCCeEEEEE-CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-ceeee
Confidence            3344557888877 322211110000000000   12 2267788899988776665  789999999984432 22211


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEE-EEeCCCeEEEEEcCCCceeccccccccc-ccCCCCccccccccc-eeEEEEE
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEE-QEAPGTRSFFTEIIA-SISDIKF  349 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~-~i~~~~~  349 (408)
                           + ........+.|+|++ ++|+ +...++.|.++|+.+++..    ..+.. ..        ..|.+ .+. + +
T Consensus       338 -----i-~~~~~~~d~~~~pdg-r~~~va~~~sn~V~ViD~~t~kl~----~~i~vgg~--------~Phpg~g~~-~-~  396 (567)
T 1qks_A          338 -----I-SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLV----AIEDTGGQ--------TPHPGRGAN-F-V  396 (567)
T ss_dssp             -----E-ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEECSSS--------SBCCTTCEE-E-E
T ss_pred             -----e-eccccccCceECCCC-CEEEEEeCCCCeEEEEECCCCcEE----EEEeccCc--------CCCCcccee-e-E
Confidence                 1 123446788999999 5554 4556889999999998754    22221 11        11111 222 2 5


Q ss_pred             ccC-CCEEEEe--CCCeEEEEECCCC------CCceeeeeec
Q 015363          350 ARN-GRHILSR--DYMTLKLWDINMD------SGPVATFQVH  382 (408)
Q Consensus       350 spd-g~~l~s~--~d~~v~~wd~~~~------~~~~~~~~~~  382 (408)
                      +|+ +...+++  +++.|.++|.+..      .+.++++...
T Consensus       397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~  438 (567)
T 1qks_A          397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL  438 (567)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence            887 4455555  3589999999862      2456666553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.42  E-value=3.4e-11  Score=117.01  Aligned_cols=248  Identities=14%  Similarity=0.064  Sum_probs=146.1

Q ss_pred             eccceEEEEECCCCCeEEEeecC-----CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRG-----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      |...+..++|||||++||.++.+     ..|++||+.+++..                        ....+.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~------------------------~~~~~~--------  208 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL------------------------ADELKW--------  208 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE------------------------EEEEEE--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC------------------------CccCCC--------
Confidence            33478899999999999887654     36999999887531                        111111        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCe--------------EEEEEcCCCcE--EEEeccCCCCcccCCCCCeEeecC
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKT--------------IKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHV  172 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~--------------i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~  172 (408)
                          ..+..++|+|+   +.|+.++.|+.              |++|++.++..  ..+.....++      ..+.    
T Consensus       209 ----~~~~~~~wspD---~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~------~~~~----  271 (741)
T 1yr2_A          209 ----VKFSGLAWLGN---DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP------KRGH----  271 (741)
T ss_dssp             ----EESCCCEESTT---SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT------TCEE----
T ss_pred             ----ceeccEEEECC---CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC------eEEE----
Confidence                22467899654   57777765543              88999877652  2232222111      1122    


Q ss_pred             CceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-
Q 015363          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  251 (408)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-  251 (408)
                         .+.|+|||+.+......       .......|.+|| +.....    .+.+.+ ..+...+.... +|+++.|+.. 
T Consensus       272 ---~~~~SpDG~~l~~~~~~-------~~~~~~~l~~~d-~~~~~~----~~~~~l-~~~~~~~~~~~-~~dg~~l~~~s  334 (741)
T 1yr2_A          272 ---GASVSSDGRWVVITSSE-------GTDPVNTVHVAR-VTNGKI----GPVTAL-IPDLKAQWDFV-DGVGDQLWFVS  334 (741)
T ss_dssp             ---EEEECTTSCEEEEEEEC-------TTCSCCEEEEEE-EETTEE----CCCEEE-ECSSSSCEEEE-EEETTEEEEEE
T ss_pred             ---EEEECCCCCEEEEEEEc-------cCCCcceEEEEE-CCCCCC----cccEEe-cCCCCceEEEE-eccCCEEEEEE
Confidence               67899999987221100       001245788888 543210    101222 22333333433 4888877765 


Q ss_pred             c----CCeEEEEeCCCC-CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC-CCceeccccccc
Q 015363          252 D----DLRINLWNLEIS-NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSALCDTHSKLF  325 (408)
Q Consensus       252 ~----d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~  325 (408)
                      .    ++.|.+||+... .....+       +..+...+..++++ ++ .++++...|+..+||.+. .+...    +.+
T Consensus       335 ~~~~~~~~l~~~d~~~~~~~~~~l-------~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~----~~l  401 (741)
T 1yr2_A          335 GDGAPLKKIVRVDLSGSTPRFDTV-------VPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGKPA----GAV  401 (741)
T ss_dssp             CTTCTTCEEEEEECSSSSCEEEEE-------ECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSCEE----EEC
T ss_pred             CCCCCCCEEEEEeCCCCccccEEE-------ecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCce----eec
Confidence            3    456999998853 233333       23344456677887 44 788888889988777654 23222    233


Q ss_pred             ccccCCCCccccccccceeEEEEEccCCCEEE-Ee---C-CCeEEEEECCC
Q 015363          326 EEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SR---D-YMTLKLWDINM  371 (408)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~-s~---~-d~~v~~wd~~~  371 (408)
                      ..+.           .+.+..+.++|++..|+ +.   . .++|++||+.+
T Consensus       402 ~~~~-----------~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          402 SLPG-----------IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             BCSS-----------SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             cCCC-----------CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            3221           25688999999987555 22   2 28999999976

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.42  E-value=1.1e-10  Score=100.22  Aligned_cols=214  Identities=8%  Similarity=0.019  Sum_probs=137.4

Q ss_pred             cceeEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      ....+++|.|+  |. +++++..++.|..|+..++ . ..+...        .+.+.       .++++++|+.+     
T Consensus        28 ~~~eg~~~d~~--g~~l~~~~~~~~~i~~~~~~~~-~-~~~~~~--------~~~~~-------~l~~~~dg~l~-----   83 (296)
T 3e5z_A           28 TWTEGPVYVPA--RSAVIFSDVRQNRTWAWSDDGQ-L-SPEMHP--------SHHQN-------GHCLNKQGHLI-----   83 (296)
T ss_dssp             SSEEEEEEEGG--GTEEEEEEGGGTEEEEEETTSC-E-EEEESS--------CSSEE-------EEEECTTCCEE-----
T ss_pred             ccccCCeEeCC--CCEEEEEeCCCCEEEEEECCCC-e-EEEECC--------CCCcc-------eeeECCCCcEE-----
Confidence            44788999765  76 7778888999999999987 3 332221        11222       68899999875     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE----e-c-------------C
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----A-D-------------D  253 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~----~-~-------------d  253 (408)
                             ++...++.|.+|+ .........   ...........++.++++|+|+++++    | .             .
T Consensus        84 -------v~~~~~~~i~~~d-~~~g~~~~~---~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~  152 (296)
T 3e5z_A           84 -------ACSHGLRRLERQR-EPGGEWESI---ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG  152 (296)
T ss_dssp             -------EEETTTTEEEEEC-STTCCEEEE---ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred             -------EEecCCCeEEEEc-CCCCcEEEE---eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence                   6556667888888 422111100   00000111234678999999999887    3 1             2


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC-CCce-ecccccccccccCC
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSAL-CDTHSKLFEEQEAP  331 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~-~~~~~~~~~~~~~~  331 (408)
                      +.|..++..  +....        +..+......++|+|++ +++++.+.++.|.+|++. .+.. ...  ..+..+   
T Consensus       153 ~~l~~~~~~--g~~~~--------~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~--~~~~~~---  216 (296)
T 3e5z_A          153 RWVFRLAPD--GTLSA--------PIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQG--VHFTVE---  216 (296)
T ss_dssp             CEEEEECTT--SCEEE--------EECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEE--EEECCS---
T ss_pred             cEEEEECCC--CCEEE--------eecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCC--eEeeCC---
Confidence            355555544  32222        22344567899999999 777777778999999997 4432 100  122111   


Q ss_pred             CCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEE
Q 015363          332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVM  390 (408)
Q Consensus       332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  390 (408)
                               ...+..++++++|+++++. ++.|.+||.+  ++.+..+..+.. ...+.
T Consensus       217 ---------~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~~~~~  262 (296)
T 3e5z_A          217 ---------PGKTDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-TSNLC  262 (296)
T ss_dssp             ---------SSCCCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-CCEEE
T ss_pred             ---------CCCCCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-ceeEE
Confidence                     2456779999999988777 8899999985  688888887766 44443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.41  E-value=3.3e-10  Score=100.17  Aligned_cols=256  Identities=9%  Similarity=0.013  Sum_probs=143.8

Q ss_pred             EEEECCCCCeEEEee----------cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccC-Ccccccccc
Q 015363           40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH-EPEFDYLKS  108 (408)
Q Consensus        40 ~~~~s~~~~~l~sg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h-~~~~~~~~~  108 (408)
                      .++++|||++|+++.          .++.|.+||..+.+..                       ..+.-. ...+     
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~-----------------------~~i~~~~~~~~-----  121 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPRF-----  121 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE-----------------------EEEECCCcccc-----
Confidence            899999999988875          3678999998765431                       111100 0000     


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeC--CCeEEEEEcCCCcEEEE-eccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                       ........+.|+|+  |++|+++..  ++.|.++| .+++.... .....                   ++.+.|++..
T Consensus       122 -~~g~~p~~~~~spD--G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-------------------~~~~~~~~~~  178 (373)
T 2mad_H          122 -DVGPYSWMNANTPN--NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-------------------CYHIHPGAPS  178 (373)
T ss_pred             -ccCCCccceEECCC--CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-------------------eEEEEeCCCc
Confidence             00012457889654  889888864  58899999 98887655 43321                   1233344432


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE-EecCCeEEEEeCCCC
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SADDLRINLWNLEIS  264 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~iwd~~~~  264 (408)
                      .           +++...++.+..++ . .............+ .....-.....+.+++..++ ....+.+.+.|+...
T Consensus       179 ~-----------~~~~~~dg~~~~vd-~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~  244 (373)
T 2mad_H          179 T-----------FYLLCAQGGLAKTD-H-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             e-----------EEEEcCCCCEEEEE-C-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence            2           13344566666666 3 21111000000000 01111112344556655444 346788999998733


Q ss_pred             Cc-eeeEeecCCCc---ccCCcCCeEEEEEcCCCCceEEEEeC----------CCeEEEEEcCCCceecccccccccccC
Q 015363          265 NQ-SFNIVDVKPAN---MEDLTEVITSAEFHPTHCNMLAYSSS----------KGSIRLIDMRQSALCDTHSKLFEEQEA  330 (408)
Q Consensus       265 ~~-~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~  330 (408)
                      .. ....+++....   ..........+.++|++ ..+.++..          ++.|.++|+.+++.+    ..+...  
T Consensus       245 ~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv----~~i~~g--  317 (373)
T 2mad_H          245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS----SQISLG--  317 (373)
T ss_pred             cceEeeeeeecCCcccccceecCceEeEEECCCC-CEEEEEeccCCcccccCCCCeEEEEECCCCEEE----EEEECC--
Confidence            21 11211110000   00012224457899998 55444432          358999999998765    444332  


Q ss_pred             CCCccccccccceeEEEEEccCCC-EEEEeC--CCeEEEEECCCCCCceeee
Q 015363          331 PGTRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~spdg~-~l~s~~--d~~v~~wd~~~~~~~~~~~  379 (408)
                                 .....++|+|||+ .++++.  ++.|.++|+.+ ++.++++
T Consensus       318 -----------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t-~~vv~~i  357 (373)
T 2mad_H          318 -----------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA-GDQDQST  357 (373)
T ss_pred             -----------CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC-CCEEeee
Confidence                       3478899999999 777764  59999999998 6887773

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.39  E-value=1.2e-10  Score=101.89  Aligned_cols=263  Identities=11%  Similarity=0.103  Sum_probs=148.3

Q ss_pred             EEEECCCCCeEEEee----------cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        40 ~~~~s~~~~~l~sg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .++++|||++++++.          .++.|.+||..+.+..                       ..+.-..+.     ..
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~-----------------------~~I~v~~g~-----r~  133 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT-----------------------ADIELPDAP-----RF  133 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE-----------------------EEEEETTCC-----CC
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE-----------------------EEEECCCcc-----cc
Confidence            399999999887775          3678999998877531                       121100000     00


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeC--CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                      ........++|+  ++|++++++..  ++.|.++|+.+++....+......       .++..+ ...-+..++||+.+ 
T Consensus       134 ~~g~~P~~~a~s--pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~-------~~~P~g-~~~~~~~~~DG~~~-  202 (386)
T 3sjl_D          134 LVGTYPWMTSLT--PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY-------HIFPTA-PDTFFMHCRDGSLA-  202 (386)
T ss_dssp             CBSCCGGGEEEC--TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-------EEEEEE-TTEEEEEETTSCEE-
T ss_pred             ccCCCCceEEEc--CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcc-------eeecCC-CceeEEECCCCCEE-
Confidence            000125568896  45888888763  689999999999988776543210       011000 00012445555544 


Q ss_pred             cccccccCccccCCC-CCceeeeceeeeccccccccccceeeccccccce-EEEEe-CCCCCEEEEecCCeEEEEeCCCC
Q 015363          188 RNFGCASNDSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI-NSISN-NSDGETFISADDLRINLWNLEIS  264 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~i~~-~~~~~~l~~~~d~~i~iwd~~~~  264 (408)
                                 +... ..+.+.  + ..        .  ..+ ......+ ....| .++|++++...+++|.+.|....
T Consensus       203 -----------~v~~~~~g~v~--~-~~--------~--~~~-~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~  257 (386)
T 3sjl_D          203 -----------KVAFGTEGTPE--I-TH--------T--EVF-HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  257 (386)
T ss_dssp             -----------EEECCSSSCCE--E-EE--------C--CCC-SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             -----------EEECCCCCeEE--E-ee--------c--cee-ccccccccccceeEcCCCcEEEEeCCCEEEEEECCCC
Confidence                       2211 112221  0 00        0  000 0001111 11244 46787777667899999999743


Q ss_pred             Cc-eeeEeec-CCCc--ccCCcCCeEEEEEcCCCCceEEEEeC----------CCeEEEEEcCCCceecccccccccccC
Q 015363          265 NQ-SFNIVDV-KPAN--MEDLTEVITSAEFHPTHCNMLAYSSS----------KGSIRLIDMRQSALCDTHSKLFEEQEA  330 (408)
Q Consensus       265 ~~-~~~~~~~-~~~~--~~~~~~~v~~~~~~p~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~  330 (408)
                      .. ....+.+ ....  ..........++++|++ ..++....          ..+|.+.|+.+++.+    +.+...  
T Consensus       258 ~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~-~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~----~~i~vg--  330 (386)
T 3sjl_D          258 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL----AKFEMG--  330 (386)
T ss_dssp             SCEECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----EEEEEE--
T ss_pred             cceeecceeccccccccccccCCCcceeeECCCC-CeEEEEeccccccccCCCCCEEEEEECCCCeEE----EEEECC--
Confidence            32 2211110 0000  00011223357779998 55554432          257999999999775    444333  


Q ss_pred             CCCccccccccceeEEEEEccCCC-EEEEe-C-CCeEEEEECCCCCCceeeeeecccc
Q 015363          331 PGTRSFFTEIIASISDIKFARNGR-HILSR-D-YMTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~spdg~-~l~s~-~-d~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                                 ..+..++++||++ +|+++ . ++.|.++|..+ ++.++++......
T Consensus       331 -----------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t-~k~~~~i~~~~~p  376 (386)
T 3sjl_D          331 -----------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES-GEELRSVNQLGHG  376 (386)
T ss_dssp             -----------EEECEEEECSSSSCEEEEEETTTTEEEEEETTT-CCEEEEECCCCSS
T ss_pred             -----------CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC-CcEEEEecCCCCC
Confidence                       3578999999997 67665 3 69999999998 7999988765443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.39  E-value=1.9e-09  Score=92.36  Aligned_cols=239  Identities=8%  Similarity=-0.018  Sum_probs=152.9

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ...+.+++++++|.++++...++.|..|+.. +...                     .. .+....            ..
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~---------------------~~-~~~~~~------------~~  100 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIK---------------------EY-TLPNPD------------SA  100 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---------------------EE-ECSSTT------------CC
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEE---------------------EE-eCCCcC------------CC
Confidence            4578999999999988877768889999865 2110                     00 011111            44


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      +.++++.  ++|.++++...++.|..||. +++.........       ...+       ..+++.++|...        
T Consensus       101 ~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-------~~~~-------~~i~~~~~g~l~--------  155 (299)
T 2z2n_A          101 PYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYELPNK-------GSYP-------SFITLGSDNALW--------  155 (299)
T ss_dssp             EEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSST-------TCCE-------EEEEECTTSCEE--------
T ss_pred             ceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEecCCCC-------CCCC-------ceEEEcCCCCEE--------
Confidence            8889885  55777777777889999998 555443221100       1112       267888888764        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeec
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  273 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~  273 (408)
                          ++...++.|..|+ . ...      ............+.+++++++++++++. .++.|.+||. +.. ... +. 
T Consensus       156 ----v~~~~~~~i~~~~-~-~g~------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~~~-~~-  219 (299)
T 2z2n_A          156 ----FTENQNNAIGRIT-E-SGD------ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE-ITE-FK-  219 (299)
T ss_dssp             ----EEETTTTEEEEEC-T-TCC------EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-EEE-EE-
T ss_pred             ----EEeCCCCEEEEEc-C-CCc------EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc-EEE-EE-
Confidence                5555567788777 3 111      1111112334568899999999988777 6889999998 343 222 11 


Q ss_pred             CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC
Q 015363          274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  353 (408)
Q Consensus       274 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg  353 (408)
                          ...+...+.+++++++| +++++...++.|..||. .+..     ..+...          .+...+.++++ ++|
T Consensus       220 ----~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~-----~~~~~~----------~~~~~~~~i~~-~~g  277 (299)
T 2z2n_A          220 ----IPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTS-NNII-----EEYPIQ----------IKSAEPHGICF-DGE  277 (299)
T ss_dssp             ----CSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEET-TTEE-----EEEECS----------SSSCCEEEEEE-CSS
T ss_pred             ----CCCCCCCceeEEECCCC-CEEEeccCCceEEEECC-CCce-----EEEeCC----------CCCCccceEEe-cCC
Confidence                23345668999999999 77776667889999998 3432     122111          01246889999 999


Q ss_pred             CEEEEeCCCeEEEEECCC
Q 015363          354 RHILSRDYMTLKLWDINM  371 (408)
Q Consensus       354 ~~l~s~~d~~v~~wd~~~  371 (408)
                      ++.++...+.|..++.++
T Consensus       278 ~l~v~~~~~~l~~~~~~~  295 (299)
T 2z2n_A          278 TIWFAMECDKIGKLTLIK  295 (299)
T ss_dssp             CEEEEETTTEEEEEEEC-
T ss_pred             CEEEEecCCcEEEEEcCc
Confidence            888877667788888765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.38  E-value=3.2e-11  Score=105.88  Aligned_cols=213  Identities=11%  Similarity=0.093  Sum_probs=129.0

Q ss_pred             cCcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccc
Q 015363           12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR   91 (408)
Q Consensus        12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~   91 (408)
                      ...+.+|+...........+.-....++.+++++...++++|+.+ .+++|+++..+..      ....           
T Consensus        14 ted~~Fk~l~~~~~~~~~~~~l~~~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~------~~~~-----------   75 (388)
T 1xip_A           14 SEDFGFKFLGQKQILPSFNEKLPFASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDH------ITSD-----------   75 (388)
T ss_dssp             ESSCEEEEEEEEECSCCCTTCCCSSCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHH------HHSS-----------
T ss_pred             ccccceEECCccccccCccccCCcccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhh------hccc-----------
Confidence            456666666432111111111133479999999999999999988 5667997644310      0000           


Q ss_pred             eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeec
Q 015363           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (408)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (408)
                              ...+.......+.. |+.++|  +  +.+|+++ .++.|++||+.+........                  
T Consensus        76 --------~~~~~~~~~~~lp~-V~~l~f--d--~~~L~v~-~~~~l~v~dv~sl~~~~~~~------------------  123 (388)
T 1xip_A           76 --------STPLTFKWEKEIPD-VIFVCF--H--GDQVLVS-TRNALYSLDLEELSEFRTVT------------------  123 (388)
T ss_dssp             --------SCCCCCSEEEECTT-EEEEEE--E--TTEEEEE-ESSEEEEEESSSTTCEEEEE------------------
T ss_pred             --------cccccceEEeeCCC-eeEEEE--C--CCEEEEE-cCCcEEEEEchhhhccCccc------------------
Confidence                    00000001112225 999999  4  6788888 88999999998765222110                  


Q ss_pred             CCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe
Q 015363          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA  251 (408)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  251 (408)
                                                                                 .|...+.++.+.+..  ++++
T Consensus       124 -----------------------------------------------------------~~~~~v~~i~~~~p~--~av~  142 (388)
T 1xip_A          124 -----------------------------------------------------------SFEKPVFQLKNVNNT--LVIL  142 (388)
T ss_dssp             -----------------------------------------------------------ECSSCEEEEEECSSE--EEEE
T ss_pred             -----------------------------------------------------------eeecceeeEEecCCC--EEEE
Confidence                                                                       111223344444332  6666


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC
Q 015363          252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  330 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  330 (408)
                       .||.|.+||+.... ...           +...|++++|+|+|   ++.|..||.+++|+...+..-.  .+++...  
T Consensus       143 ~~dG~L~v~dl~~~~-~~~-----------~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~--k~~I~~P--  203 (388)
T 1xip_A          143 NSVNDLSALDLRTKS-TKQ-----------LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEK--QFEFSLP--  203 (388)
T ss_dssp             ETTSEEEEEETTTCC-EEE-----------EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEE--EEEECCC--
T ss_pred             ECCCCEEEEEccCCc-ccc-----------ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccc--cceecCC--
Confidence             99999999998443 322           24579999999999   5778899999999887764200  0222111  


Q ss_pred             CCCccccc---cccceeEEEEEccCCCEEEE
Q 015363          331 PGTRSFFT---EIIASISDIKFARNGRHILS  358 (408)
Q Consensus       331 ~~~~~~~~---~h~~~i~~~~~spdg~~l~s  358 (408)
                         . .+.   +|...|.++.|.+++.+|++
T Consensus       204 ---p-~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          204 ---S-ELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ---H-HHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ---c-ccccccCCCeeEEEEEEecCCeEEEE
Confidence               0 011   23478999999999999987

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.38  E-value=6.9e-09  Score=88.91  Aligned_cols=239  Identities=8%  Similarity=-0.032  Sum_probs=153.4

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ...+.+++++++|+++++...++.|.+|+.. ++..                     . ..+..+.            ..
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---------------------~-~~~~~~~------------~~   63 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---------------------E-FEVPTPD------------AK   63 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---------------------E-EECSSTT------------CC
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---------------------E-EECCCCC------------Cc
Confidence            4578899999999988777778899999976 3210                     0 0111111            44


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      +.++++.  ++|.++++...++.|..+|.. ++.... .....      ...+       ..+++.++|...        
T Consensus        64 ~~~i~~~--~~g~l~v~~~~~~~v~~~d~~-g~~~~~-~~~~~------~~~~-------~~i~~~~~g~l~--------  118 (300)
T 2qc5_A           64 VMCLIVS--SLGDIWFTENGANKIGKLSKK-GGFTEY-PLPQP------DSGP-------YGITEGLNGDIW--------  118 (300)
T ss_dssp             EEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEEEE-ECSST------TCCE-------EEEEECSTTCEE--------
T ss_pred             ceeEEEC--CCCCEEEEecCCCeEEEECCC-CCeEEe-cCCCC------CCCC-------ccceECCCCCEE--------
Confidence            7888884  557777776668899999988 554322 21100      0112       257777888764        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeec
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  273 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~  273 (408)
                          ++...++.|..++ ..       ..............+..++++++++++++. .++.|..||.. .. .... . 
T Consensus       119 ----v~~~~~~~i~~~~-~~-------g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~~~-~-  182 (300)
T 2qc5_A          119 ----FTQLNGDRIGKLT-AD-------GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GK-LEEY-P-  182 (300)
T ss_dssp             ----EEETTTTEEEEEC-TT-------SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC-EEEE-E-
T ss_pred             ----EEccCCCeEEEEC-CC-------CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-Cc-EEEe-e-
Confidence                5555566777766 22       111111112234568899999999977777 68899999984 33 2221 1 


Q ss_pred             CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC
Q 015363          274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  353 (408)
Q Consensus       274 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg  353 (408)
                          ...+...+..+++++++ .++++....+.|.+||. ++....   ..+...            ...+.+++++++|
T Consensus       183 ----~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~------------~~~~~~i~~d~~g  241 (300)
T 2qc5_A          183 ----LPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEISE---YDIPTP------------NARPHAITAGKNS  241 (300)
T ss_dssp             ----CSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEE---EECSST------------TCCEEEEEECSTT
T ss_pred             ----CCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcEEE---EECCCC------------CCCceEEEECCCC
Confidence                22334568899999999 77777666788999998 443321   111111            2457899999999


Q ss_pred             CEEEEeC-CCeEEEEECC
Q 015363          354 RHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       354 ~~l~s~~-d~~v~~wd~~  370 (408)
                      ++.++.. ++.|..||..
T Consensus       242 ~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          242 EIWFTEWGANQIGRITND  259 (300)
T ss_dssp             CEEEEETTTTEEEEECTT
T ss_pred             CEEEeccCCCeEEEECCC
Confidence            9777764 5899999983

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.37  E-value=4.3e-10  Score=100.91  Aligned_cols=261  Identities=9%  Similarity=-0.030  Sum_probs=149.8

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      -.....|+|+++++++++...++.|++||.+++..                        ..+....            ..
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~------------------------~~~~~~~------------~~  173 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV------------------------TTVHPGF------------KG  173 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE------------------------EEEEETC------------CB
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE------------------------EEeeccC------------CC
Confidence            34678999999999888877789999999876642                        1111111            22


Q ss_pred             eeEEEEeecCCCcEEEEEeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      .. ++|.|  ++..|+++..++  .|.+++..++.............    .       ..+..++++|++..+      
T Consensus       174 ~~-ia~~~--~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~----~-------~~p~~iav~p~~g~l------  233 (409)
T 3hrp_A          174 GK-PAVTK--DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTF----S-------GKIGAVALDETEEWL------  233 (409)
T ss_dssp             CB-CEECT--TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTS----C-------SCCCBCEECTTSSEE------
T ss_pred             Cc-eeEec--CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchh----c-------CCcEEEEEeCCCCeE------
Confidence            33 88854  477888887765  78888887665433320000000    0       111257888854444      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccce--EEEEeCCC-CCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI--NSISNNSD-GETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                            +.+..++.|..|+ ...........   ....++...-  ..++|+|+ +.++++- .++.|+.|+.. .. ..
T Consensus       234 ------yv~d~~~~I~~~d-~~~~~~~~~~~---~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~-g~-~~  301 (409)
T 3hrp_A          234 ------YFVDSNKNFGRFN-VKTQEVTLIKQ---LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD-GE-CE  301 (409)
T ss_dssp             ------EEECTTCEEEEEE-TTTCCEEEEEE---CCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT-CC-EE
T ss_pred             ------EEEECCCcEEEEE-CCCCCEEEEec---ccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC-CC-EE
Confidence                  3355677888887 33211100000   0011111111  28999996 5555555 78999999987 32 22


Q ss_pred             eEeecC-CCcc------cCCcCCeEEEEEcCCCCceEEEEe-CCCeEEEEEcCCCceecccccccccccC-CCCc--ccc
Q 015363          269 NIVDVK-PANM------EDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEA-PGTR--SFF  337 (408)
Q Consensus       269 ~~~~~~-~~~~------~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~--~~~  337 (408)
                      .+.... ....      ...-.....++++|+| +++++-. .+++|+.|++.++..     ..+.++.. ....  ...
T Consensus       302 ~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v-----~~~~g~~~~~g~~~g~~~  375 (409)
T 3hrp_A          302 WFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYV-----STVAGQVDVASQIDGTPL  375 (409)
T ss_dssp             EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEE-----EEEEECTTCBSCCCBSTT
T ss_pred             EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEE-----EEEeCCCCCCCcCCCChh
Confidence            221110 0000      0112347899999999 7888877 789999999877753     23333210 0000  000


Q ss_pred             ccccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363          338 TEIIASISDIKFARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       338 ~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~  369 (408)
                      .........++++|+|.++++-. .+.|+.+++
T Consensus       376 ~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          376 EATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             ceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            01124578999999987777765 488887765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.37  E-value=5.7e-10  Score=95.79  Aligned_cols=238  Identities=7%  Similarity=0.020  Sum_probs=140.2

Q ss_pred             eEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccccee
Q 015363           38 ISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (408)
Q Consensus        38 V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  116 (408)
                      -.+..|+++ +.++++...++.|..||..++..                        ..+. ..            ..+.
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------~~~~-~~------------~~~~   57 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------------------------QRVT-MD------------APVS   57 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------------------------EEEE-CS------------SCEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------------------------EEEe-CC------------CceE
Confidence            457889996 55667777789999999876542                        1111 11            4588


Q ss_pred             EEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCc
Q 015363          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND  196 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (408)
                      ++++.  ++|.++++ . ++.|.+||..+++............    ..       .+..+.+.|+|+....-.+.... 
T Consensus        58 ~i~~~--~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~----~~-------~~~di~~d~dG~l~~~~~~~~~~-  121 (297)
T 3g4e_A           58 SVALR--QSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKK----NN-------RFNDGKVDPAGRYFAGTMAEETA-  121 (297)
T ss_dssp             EEEEB--TTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCS----SE-------EEEEEEECTTSCEEEEEEECCSB-
T ss_pred             EEEEC--CCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCC----CC-------CCCCEEECCCCCEEEecCCcccc-
Confidence            99995  45775544 4 5689999999887655443321110    01       11257788888854111000000 


Q ss_pred             cccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCC-CCCcee--eEe
Q 015363          197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLE-ISNQSF--NIV  271 (408)
Q Consensus       197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~-~~~~~~--~~~  271 (408)
                        ........-.+|. +... .    .... . ..+....+.++|+|+++.|..+  .++.|.+||+. ..+...  +.+
T Consensus       122 --~~~~~~~~~~l~~-~d~~-g----~~~~-~-~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~  191 (297)
T 3g4e_A          122 --PAVLERHQGALYS-LFPD-H----HVKK-Y-FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV  191 (297)
T ss_dssp             --TTBCCTTCEEEEE-ECTT-S----CEEE-E-EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred             --cccccCCCcEEEE-EECC-C----CEEE-E-eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence              0000112223433 2211 1    1111 1 1222456789999999877655  58899999974 222221  111


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc-
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA-  350 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-  350 (408)
                          ..+..+......++++++| ++.++...++.|.+||..+++..    ..+..+            ...+++++|. 
T Consensus       192 ----~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~----~~i~~p------------~~~~t~~~f~g  250 (297)
T 3g4e_A          192 ----YKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRL----QTVKLP------------VDKTTSCCFGG  250 (297)
T ss_dssp             ----EECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEE----EEEECS------------SSBEEEEEEES
T ss_pred             ----EECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEE----EEEECC------------CCCceEEEEeC
Confidence                0123334567899999999 88888878889999999888654    344433            2468999998 


Q ss_pred             cCCCEEEEe
Q 015363          351 RNGRHILSR  359 (408)
Q Consensus       351 pdg~~l~s~  359 (408)
                      ||++.|+.+
T Consensus       251 ~d~~~L~vt  259 (297)
T 3g4e_A          251 KNYSEMYVT  259 (297)
T ss_dssp             GGGCEEEEE
T ss_pred             CCCCEEEEE
Confidence            888766543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.36  E-value=1.1e-10  Score=112.54  Aligned_cols=213  Identities=9%  Similarity=0.022  Sum_probs=124.5

Q ss_pred             cceeEEEEeecCCCcEEEEE-----eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          113 EKINKIRWCQSANSALYLLS-----TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~-----~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                      ..+..++|||  ||++||.+     +.+.+|++||+.+++....  ....      ....       ..++|+|||+.+ 
T Consensus       121 ~~~~~~~~SP--DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~------~~~~-------~~~~wspDg~~l-  182 (695)
T 2bkl_A          121 VSLGTWAVSW--DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIE------GGKY-------ATPKWTPDSKGF-  182 (695)
T ss_dssp             EEEEEEEECT--TSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBS------CCTT-------CCCEECTTSSEE-
T ss_pred             EEEEEEEECC--CCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cccC------cccc-------cceEEecCCCEE-
Confidence            4588999975  48888844     4457899999999875310  0100      0000       158999999987 


Q ss_pred             cccccccCccccCCCCCc-------------eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC
Q 015363          188 RNFGCASNDSSFPPGGVS-------------SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD  253 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~-------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  253 (408)
                                 +.++.+.             .|++|+ +......  ...+.. ...+...+..+.|+|||++|+.+ .+
T Consensus       183 -----------~~~~~d~~~~~~~~~~~~~~~v~~~~-l~t~~~~--~~lv~~-~~~~~~~~~~~~~SpDG~~l~~~~~~  247 (695)
T 2bkl_A          183 -----------YYEWLPTDPSIKVDERPGYTTIRYHT-LGTEPSK--DTVVHE-RTGDPTTFLQSDLSRDGKYLFVYILR  247 (695)
T ss_dssp             -----------EEEECCCCTTSCGGGGGGGCEEEEEE-TTSCGGG--CEEEEC-CCCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred             -----------EEEEecCCCCCccccCCCCCEEEEEE-CCCCchh--ceEEEe-cCCCCEEEEEEEECCCCCEEEEEEeC
Confidence                       4444433             388877 4321110  011111 12344578899999999988876 44


Q ss_pred             C----eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe---CCCeEEEEEcCCCceecccccccc
Q 015363          254 L----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFE  326 (408)
Q Consensus       254 ~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~  326 (408)
                      +    .|.+|+... +....        +..+...+....+ +++ .+++...   .++.|.+||+.++...  ....+.
T Consensus       248 ~~~~~~l~~~~~~~-~~~~~--------l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~  314 (695)
T 2bkl_A          248 GWSENDVYWKRPGE-KDFRL--------LVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARA--SWKEIV  314 (695)
T ss_dssp             TTTEEEEEEECTTC-SSCEE--------EEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGG--GCEEEE
T ss_pred             CCCceEEEEEcCCC-CceEE--------eecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCcc--CCeEEe
Confidence            4    666666542 22222        2233444555666 788 5444443   2589999999876420  012222


Q ss_pred             cccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363          327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       327 ~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      .+..          ...+..++|+ ++.++++.. |+..+||.++..++.++.+..+
T Consensus       315 ~~~~----------~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~  360 (695)
T 2bkl_A          315 PEDS----------SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLP  360 (695)
T ss_dssp             CCCS----------SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCS
T ss_pred             cCCC----------CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCC
Confidence            2210          2457888888 667777764 6888887665335656655544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.28  E-value=1.4e-09  Score=94.74  Aligned_cols=209  Identities=10%  Similarity=0.009  Sum_probs=128.4

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      .......++++++++++++...++.|.+||..+++.                       ...+......       ....
T Consensus        82 ~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-----------------------~~~i~~g~~~-------~~~~  131 (328)
T 3dsm_A           82 GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-----------------------TGYIECPDMD-------MESG  131 (328)
T ss_dssp             CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-----------------------EEEEECTTCC-------TTTC
T ss_pred             CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-----------------------EEEEEcCCcc-------ccCC
Confidence            346678899999986555544789999999887652                       1112111000       0001


Q ss_pred             ceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          114 KINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ....+++  . ++.++++.. .++.|.++|+.+++....+.....+                ..+.+.|+|+..      
T Consensus       132 ~p~~i~~--~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p----------------~~i~~~~dG~l~------  186 (328)
T 3dsm_A          132 STEQMVQ--Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP----------------TSLVMDKYNKMW------  186 (328)
T ss_dssp             BCCCEEE--E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB----------------CCCEECTTSEEE------
T ss_pred             CcceEEE--E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc----------------cceEEcCCCCEE------
Confidence            3556777  2 244444433 4899999999999877665443221                157778888765      


Q ss_pred             ccCccccCCCC----------CceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCC
Q 015363          193 ASNDSSFPPGG----------VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLE  262 (408)
Q Consensus       193 ~~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~  262 (408)
                            ++...          .+.|.++| ....      +..+.+..........++++|+++.|.++.. .|.+||..
T Consensus       187 ------v~~~~~~~~~~~~~~~~~v~~id-~~t~------~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~  252 (328)
T 3dsm_A          187 ------TITDGGYEGSPYGYEAPSLYRID-AETF------TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVE  252 (328)
T ss_dssp             ------EEBCCBCTTCSSCBCCCEEEEEE-TTTT------EEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETT
T ss_pred             ------EEECCCccCCccccCCceEEEEE-CCCC------eEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECC
Confidence                  33333          36788877 3221      1111221111236789999999999888733 89999998


Q ss_pred             CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEE----eCCCeEEEEEcCCCcee
Q 015363          263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS----SSKGSIRLIDMRQSALC  318 (408)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~----~~dg~i~iwd~~~~~~~  318 (408)
                      +... ...     ..+.........++++|++..++++.    ..++.|.+||.. ++.+
T Consensus       253 t~~~-~~~-----~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          253 ADRV-PVR-----PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             CSSC-CSS-----CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             CCce-eee-----eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            4432 110     00122245678999999553777776    678999999998 6554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.27  E-value=3.4e-09  Score=89.44  Aligned_cols=195  Identities=6%  Similarity=-0.053  Sum_probs=123.2

Q ss_pred             ceeEEEEeecCCCcEEE-EEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          114 KINKIRWCQSANSALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ...++++.  ++|.+++ +...++.|.+|+..+..........        .       ..+..+++.++|...      
T Consensus        25 ~p~~i~~~--~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~--------~-------~~p~~i~~~~~g~l~------   81 (270)
T 1rwi_B           25 SPSGVAVD--SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG--------L-------YQPQGLAVDGAGTVY------   81 (270)
T ss_dssp             CEEEEEEC--TTCCEEEEECSSSCEEEEECC-----EECCCCS--------C-------CSCCCEEECTTCCEE------
T ss_pred             CccceEEC--CCCCEEEEccCCCCcEEEecCCCcccceEeeCC--------c-------CCcceeEECCCCCEE------
Confidence            47889995  4577666 4477899999997665432211110        0       112267888888754      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                            ++.. ++.|..|+ .....       ...+.......+..++++++++++++. .++.|.+|+.........  
T Consensus        82 ------v~~~-~~~i~~~d-~~~~~-------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--  144 (270)
T 1rwi_B           82 ------VTDF-NNRVVTLA-AGSNN-------QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--  144 (270)
T ss_dssp             ------EEET-TTEEEEEC-TTCSC-------CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--
T ss_pred             ------EEcC-CCEEEEEe-CCCce-------EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--
Confidence                  4444 77888877 32211       111111222568899999999988877 788999997653222211  


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                            .......+..++++|++ +++++...++.|.+||.......    ......            ...+..+++++
T Consensus       145 ------~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~----~~~~~~------------~~~p~~i~~d~  201 (270)
T 1rwi_B          145 ------PFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQV----VLPFTD------------ITAPWGIAVDE  201 (270)
T ss_dssp             ------CCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEE----ECCCSS------------CCSEEEEEECT
T ss_pred             ------ccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceE----eecccC------------CCCceEEEECC
Confidence                  11223356789999999 77777777889999998876432    111111            14578899999


Q ss_pred             CCCEEEEeC-CCeEEEEECCC
Q 015363          352 NGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       352 dg~~l~s~~-d~~v~~wd~~~  371 (408)
                      +|.++++.. ++.|.+|+...
T Consensus       202 ~g~l~v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          202 AGTVYVTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             TCCEEEEETTTSCEEEECTTC
T ss_pred             CCCEEEEECCCCcEEEEcCCC
Confidence            997777764 58999999864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.26  E-value=1.7e-08  Score=86.45  Aligned_cols=236  Identities=8%  Similarity=0.030  Sum_probs=148.7

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      ..+.+++++++|+++++...++.|..||.. +...                      ...+....            ..+
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~----------------------~~~~~~~~------------~~~  106 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT----------------------EYPLPQPD------------SGP  106 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE----------------------EEECSSTT------------CCE
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE----------------------EecCCCCC------------CCC
Confidence            568899999999977776667889999866 3210                      00111111            347


Q ss_pred             eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363          116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (408)
                      .++++.  ++|.++++...++.|..++.. ++..... ....      ....       ..+++.++|+..         
T Consensus       107 ~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~~------~~~~-------~~i~~d~~g~l~---------  160 (300)
T 2qc5_A          107 YGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYD-LPNK------GSYP-------AFITLGSDNALW---------  160 (300)
T ss_dssp             EEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEE-CSST------TCCE-------EEEEECTTSSEE---------
T ss_pred             ccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEcc-CCCC------CCCc-------eeEEECCCCCEE---------
Confidence            888885  457777776678899999987 5544322 1100      1112       267788888754         


Q ss_pred             ccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecC
Q 015363          196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK  274 (408)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  274 (408)
                         ++...++.|..++ . ..      .........+...+..++++++++++++. ..+.|.+||.. .. .... .  
T Consensus       161 ---v~~~~~~~i~~~~-~-~g------~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~~~-~--  224 (300)
T 2qc5_A          161 ---FTENQNNSIGRIT-N-TG------KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GE-ISEY-D--  224 (300)
T ss_dssp             ---EEETTTTEEEEEC-T-TC------CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC-EEEE-E--
T ss_pred             ---EEecCCCeEEEEC-C-CC------cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-Cc-EEEE-E--
Confidence               4445566777776 3 11      11111112334568899999999888877 67889999984 32 2221 1  


Q ss_pred             CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363          275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       275 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                         ...+...+.+++++++| +++++...++.|..||. ++....   ..+...            ...+.+++++++|+
T Consensus       225 ---~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~------------~~~~~~i~~~~~g~  284 (300)
T 2qc5_A          225 ---IPTPNARPHAITAGKNS-EIWFTEWGANQIGRITN-DNTIQE---YQLQTE------------NAEPHGITFGKDGS  284 (300)
T ss_dssp             ---CSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECT-TSCEEE---EECCST------------TCCCCCEEECTTSC
T ss_pred             ---CCCCCCCceEEEECCCC-CEEEeccCCCeEEEECC-CCcEEE---EECCcc------------CCccceeEeCCCCC
Confidence               22345568899999999 77777666789999998 343210   111111            14578899999999


Q ss_pred             EEEEeCCCeEEEEEC
Q 015363          355 HILSRDYMTLKLWDI  369 (408)
Q Consensus       355 ~l~s~~d~~v~~wd~  369 (408)
                      +.++... .|..+|.
T Consensus       285 l~v~~~~-~i~~~~p  298 (300)
T 2qc5_A          285 VWFALKC-KIGKLNL  298 (300)
T ss_dssp             EEEECSS-EEEEEEE
T ss_pred             EEEEccC-ceEEeCC
Confidence            7777654 6766665

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.25  E-value=1.1e-09  Score=97.52  Aligned_cols=258  Identities=10%  Similarity=0.084  Sum_probs=145.7

Q ss_pred             EEEECCCCCeEEEee----------cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccC-Ccccccccc
Q 015363           40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH-EPEFDYLKS  108 (408)
Q Consensus        40 ~~~~s~~~~~l~sg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h-~~~~~~~~~  108 (408)
                      .++++|||++|+++.          .++.|.++|..+.+..                       ..+.-. ...+     
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv-----------------------~~I~v~g~~r~-----  173 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPRF-----  173 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE-----------------------EEEEETTCCCC-----
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE-----------------------EEEECCCcccc-----
Confidence            799999999888876          4678999998876531                       111100 0000     


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeC--CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                       ........+.|+  ++|++++++..  ++.|.+.|+.+.+....+......       .+. ......-+.++++|+.+
T Consensus       174 -~~g~~P~~~~~s--pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~-------~~~-p~g~~~~v~~~~dG~~~  242 (426)
T 3c75_H          174 -LVGTYQWMNALT--PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCY-------HIF-PASPTVFYMNCRDGSLA  242 (426)
T ss_dssp             -CBSCCGGGSEEC--TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-------EEE-EEETTEEEEEETTSSEE
T ss_pred             -ccCCCcceEEEc--CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCce-------eec-cCCCcEEEEEcCCCCEE
Confidence             000124567885  55888888764  689999999999887766542210       000 00001124455555544


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~  265 (408)
                                  +....++.+.. . ..           ..+..........+.+.+++..++.. ..+.|.+.|.....
T Consensus       243 ------------~V~~~~~~v~~-~-~~-----------~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~  297 (426)
T 3c75_H          243 ------------RVDFADGETKV-T-NT-----------EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG  297 (426)
T ss_dssp             ------------EEECCTTCCEE-E-EC-----------CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred             ------------EEECCCCcEEE-E-ee-----------eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence                        21112222221 0 00           00000000111134678888776665 77899999987332


Q ss_pred             ce-eeEeecCC-Cccc--CCcCCeEEEEEcCCCCceEEEEeC---------CCeEEEEEcCCCceecccccccccccCCC
Q 015363          266 QS-FNIVDVKP-ANME--DLTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDMRQSALCDTHSKLFEEQEAPG  332 (408)
Q Consensus       266 ~~-~~~~~~~~-~~~~--~~~~~v~~~~~~p~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  332 (408)
                      .. ...+.+.. ....  ........++++|++.+++++...         ++.|.+.|+.+.+.+    ..+...    
T Consensus       298 ~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv----~~I~vg----  369 (426)
T 3c75_H          298 ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI----NKIELG----  369 (426)
T ss_dssp             EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----EEEEEE----
T ss_pred             eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE----EEEECC----
Confidence            11 11111100 0000  011112237899998444444331         357999999999765    444433    


Q ss_pred             CccccccccceeEEEEEccCCC-EEEEeC--CCeEEEEECCCCCCceeee
Q 015363          333 TRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       333 ~~~~~~~h~~~i~~~~~spdg~-~l~s~~--d~~v~~wd~~~~~~~~~~~  379 (408)
                               .....+.|+|||+ +|+++.  ++.|.++|+.+ ++.++++
T Consensus       370 ---------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t-~kvv~tI  409 (426)
T 3c75_H          370 ---------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT-GEELRSV  409 (426)
T ss_dssp             ---------EEECEEEECCSSSCEEEEEETTTTEEEEEETTT-CCEEEEE
T ss_pred             ---------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC-CCEEEEe
Confidence                     3478899999999 888774  59999999998 7888887

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.22  E-value=2.4e-08  Score=86.78  Aligned_cols=227  Identities=11%  Similarity=-0.003  Sum_probs=135.4

Q ss_pred             eEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccccee
Q 015363           38 ISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (408)
Q Consensus        38 V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  116 (408)
                      ..++.|+|+ +.++++...++.|..|+..++..                        ..+. ..            ..+.
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------~~~~-~~------------~~v~   93 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRK------------------------TVHA-LP------------FMGS   93 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE------------------------EEEE-CS------------SCEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE------------------------EEEE-CC------------Ccce
Confidence            457889997 55667777788999999876532                        1111 11            4588


Q ss_pred             EEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCc
Q 015363          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND  196 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (408)
                      +++|.|+  |.++++ +.+ .|.+||..+++...........    +...+.       .+.+.|+|+..          
T Consensus        94 ~i~~~~d--g~l~v~-~~~-gl~~~d~~~g~~~~~~~~~~~~----~~~~~~-------~i~~d~~G~l~----------  148 (326)
T 2ghs_A           94 ALAKISD--SKQLIA-SDD-GLFLRDTATGVLTLHAELESDL----PGNRSN-------DGRMHPSGALW----------  148 (326)
T ss_dssp             EEEEEET--TEEEEE-ETT-EEEEEETTTCCEEEEECSSTTC----TTEEEE-------EEEECTTSCEE----------
T ss_pred             EEEEeCC--CeEEEE-ECC-CEEEEECCCCcEEEEeeCCCCC----CCCCCC-------CEEECCCCCEE----------
Confidence            9999765  766554 444 4999999888765543321100    011122       57888888754          


Q ss_pred             cccCCC----CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCC-CCC-ce-
Q 015363          197 SSFPPG----GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLE-ISN-QS-  267 (408)
Q Consensus       197 ~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~-~~~-~~-  267 (408)
                        ++..    ......+|. +.  +.    .. ..+ ..+....+.++|+|+++.++.+  .++.|.+||+. ..+ .. 
T Consensus       149 --v~~~~~~~~~~~~~l~~-~~--~g----~~-~~~-~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~  217 (326)
T 2ghs_A          149 --IGTMGRKAETGAGSIYH-VA--KG----KV-TKL-FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG  217 (326)
T ss_dssp             --EEEEETTCCTTCEEEEE-EE--TT----EE-EEE-EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS
T ss_pred             --EEeCCCcCCCCceEEEE-Ee--CC----cE-EEe-eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc
Confidence              2211    112334554 32  11    11 111 1222346789999999877655  57899999985 122 11 


Q ss_pred             -eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          268 -FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       268 -~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                       ...+.    .+......+..++++++| .++++...++.|.+||. +++..    ..+..+            ...+.+
T Consensus       218 ~~~~~~----~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~-~g~~~----~~i~~~------------~~~~~~  275 (326)
T 2ghs_A          218 KAEVFI----DSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-DGNHI----ARYEVP------------GKQTTC  275 (326)
T ss_dssp             CCEEEE----ECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECT-TCCEE----EEEECS------------CSBEEE
T ss_pred             CceEEE----ECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECC-CCCEE----EEEECC------------CCCcEE
Confidence             11110    122233456789999999 77777767789999998 45433    333333            246899


Q ss_pred             EEEc-cCCCEEEEe
Q 015363          347 IKFA-RNGRHILSR  359 (408)
Q Consensus       347 ~~~s-pdg~~l~s~  359 (408)
                      ++|+ |++..|+.+
T Consensus       276 ~af~g~d~~~L~vt  289 (326)
T 2ghs_A          276 PAFIGPDASRLLVT  289 (326)
T ss_dssp             EEEESTTSCEEEEE
T ss_pred             EEEecCCCCEEEEE
Confidence            9998 888766544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.22  E-value=1e-08  Score=88.29  Aligned_cols=250  Identities=9%  Similarity=-0.015  Sum_probs=139.0

Q ss_pred             eeccceEEEEECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..........|+|+|+ +++++..++.|..|+.. +..                        ..+..+.           
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~------------------------~~~~~~~-----------   85 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV------------------------DVLLDAT-----------   85 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE------------------------EEEEESC-----------
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE------------------------EEEeCCC-----------
Confidence            3455677899999998 67777788999999863 321                        1233233           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc-
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF-  190 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-  190 (408)
                       ..+..+++.  ++|.++++...++.|.+|+.. ++...........           ....+..+.+.++|....+-. 
T Consensus        86 -~~~~gl~~d--~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~-----------~~~~~~~i~~d~dG~l~~td~~  150 (305)
T 3dr2_A           86 -AFTNGNAVD--AQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGK-----------RLNSPNDLIVARDGAIWFTDPP  150 (305)
T ss_dssp             -SCEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEEEEECEETTE-----------ECSCCCCEEECTTSCEEEECCS
T ss_pred             -CccceeeEC--CCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCC-----------ccCCCCCEEECCCCCEEEeCcC
Confidence             448889995  558766665566899999986 5543332211100           001122577888887651100 


Q ss_pred             -cccc---CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC------CeEEEE
Q 015363          191 -GCAS---NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD------LRINLW  259 (408)
Q Consensus       191 -~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d------~~i~iw  259 (408)
                       +...   ..........+.|..++ ......       ..+ . .....+.++|+|+++.|+.+ ..      +.|.+|
T Consensus       151 ~g~~~~~~~~~~~~~~~~~~v~~~d-~~~g~~-------~~~-~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~  220 (305)
T 3dr2_A          151 FGLRKPSQGCPADPELAHHSVYRLP-PDGSPL-------QRM-A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF  220 (305)
T ss_dssp             GGGSCGGGSCCCCCSSSCEEEEEEC-SSSCCC-------EEE-E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred             CCccccccccccccccCCCeEEEEc-CCCCcE-------EEE-e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence             0000   00000001124455544 211111       111 1 22456789999999977776 43      789999


Q ss_pred             eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccc
Q 015363          260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE  339 (408)
Q Consensus       260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (408)
                      ++.... ......+    ..........++++++| ++.++ ..+ .|.+|+.. ++..    ..+..+           
T Consensus       221 ~~~~~~-l~~~~~~----~~~~~~~pdgi~~d~~G-~lwv~-~~~-gv~~~~~~-g~~~----~~~~~~-----------  276 (305)
T 3dr2_A          221 AWRDGA-LHDRRHF----ASVPDGLPDGFCVDRGG-WLWSS-SGT-GVCVFDSD-GQLL----GHIPTP-----------  276 (305)
T ss_dssp             EEETTE-EEEEEEE----ECCSSSCCCSEEECTTS-CEEEC-CSS-EEEEECTT-SCEE----EEEECS-----------
T ss_pred             EecCCC-ccCCeEE----EECCCCCCCeEEECCCC-CEEEe-cCC-cEEEECCC-CCEE----EEEECC-----------
Confidence            987432 1110000    11122334578999999 65444 344 59999984 4332    333333           


Q ss_pred             ccceeEEEEEccCCCEEEEeCCCeEEEEEC
Q 015363          340 IIASISDIKFARNGRHILSRDYMTLKLWDI  369 (408)
Q Consensus       340 h~~~i~~~~~spdg~~l~s~~d~~v~~wd~  369 (408)
                        ..+..++|+|+++.|+.++.+.+..+++
T Consensus       277 --~~~~~~~f~~d~~~L~it~~~~l~~~~~  304 (305)
T 3dr2_A          277 --GTASNCTFDQAQQRLFITGGPCLWMLPL  304 (305)
T ss_dssp             --SCCCEEEECTTSCEEEEEETTEEEEEEC
T ss_pred             --CceeEEEEeCCCCEEEEEcCCeEEEEEC
Confidence              2477899999998887775545544443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.20  E-value=4.3e-09  Score=102.24  Aligned_cols=221  Identities=11%  Similarity=0.039  Sum_probs=120.1

Q ss_pred             cceeEEEEeecCCCcEEEEEeCC-----CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          113 EKINKIRWCQSANSALYLLSTND-----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                      ..+..++|+|  ||++||.++.+     ..|++||+.+++.........                ....++|+|| +.+.
T Consensus       163 ~~~~~~~~SP--DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~----------------~~~~~~wspD-~~l~  223 (741)
T 1yr2_A          163 TALDAWAASD--DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWV----------------KFSGLAWLGN-DALL  223 (741)
T ss_dssp             EEEEEEEECT--TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEE----------------ESCCCEESTT-SEEE
T ss_pred             EEEEeEEECC--CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCc----------------eeccEEEECC-CEEE
Confidence            3588899975  48899887643     469999999998754311100                0015789999 7762


Q ss_pred             cccccccC--ccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC-----CeEEEE
Q 015363          188 RNFGCASN--DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-----LRINLW  259 (408)
Q Consensus       188 ~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-----~~i~iw  259 (408)
                      ........  ..+........|++|+ +.....  ....+.. ...+...+..+.|+|||++|+.. .+     ..|++|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~v~~~~-lgt~~~--~~~lv~~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~  299 (741)
T 1yr2_A          224 YSRFAEPKEGQAFQALNYNQTVWLHR-LGTPQS--ADQPVFA-TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVA  299 (741)
T ss_dssp             EEECCCC--------CCCCCEEEEEE-TTSCGG--GCEEEEC-CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEE
T ss_pred             EEEecCcccccccccCCCCCEEEEEE-CCCCch--hCEEEec-cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEE
Confidence            11100000  0000000123466666 321110  0011111 02233357899999999988875 43     389999


Q ss_pred             eCCCCCce-eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC----CCeEEEEEcCCCc-eecccccccccccCCCC
Q 015363          260 NLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRLIDMRQSA-LCDTHSKLFEEQEAPGT  333 (408)
Q Consensus       260 d~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~  333 (408)
                      |+.++... ...       +..+...+... ++|++ ..|+..+.    ++.|.+||+.++. ..   ...+..+     
T Consensus       300 d~~~~~~~~~~~-------l~~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~---~~l~~~~-----  362 (741)
T 1yr2_A          300 RVTNGKIGPVTA-------LIPDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRF---DTVVPES-----  362 (741)
T ss_dssp             EEETTEECCCEE-------EECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSSCEE---EEEECCC-----
T ss_pred             ECCCCCCcccEE-------ecCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCcccc---EEEecCC-----
Confidence            99844211 222       22233334444 34888 66666665    3569999988742 11   0222222     


Q ss_pred             ccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeee
Q 015363          334 RSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~  381 (408)
                             ...+..++|+ ++.++++.. ++..+||.++..+..++.+..
T Consensus       363 -------~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~  403 (741)
T 1yr2_A          363 -------KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL  403 (741)
T ss_dssp             -------SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC
T ss_pred             -------CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC
Confidence                   2456778887 556666664 677777765533565665554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.15  E-value=3.3e-08  Score=84.71  Aligned_cols=214  Identities=12%  Similarity=0.108  Sum_probs=129.4

Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      .-+..|+|. ++.++++...++.|..||..+++... ....         ..+.       .+++.++|+.+        
T Consensus        15 ~Egp~w~~~-~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~---------~~~~-------~i~~~~dG~l~--------   68 (297)
T 3g4e_A           15 GESPVWEEV-SNSLLFVDIPAKKVCRWDSFTKQVQR-VTMD---------APVS-------SVALRQSGGYV--------   68 (297)
T ss_dssp             EEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEE-EECS---------SCEE-------EEEEBTTSSEE--------
T ss_pred             ccCCeEECC-CCEEEEEECCCCEEEEEECCCCcEEE-EeCC---------CceE-------EEEECCCCCEE--------
Confidence            557889753 34566666788999999999876532 2221         1222       68889999854        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC---------CeEEEEeCCCC
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD---------LRINLWNLEIS  264 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d---------~~i~iwd~~~~  264 (408)
                          ++ . +..|.+|| ..........   ..........++.++++|+|+++++. ..         ..-.+|.+...
T Consensus        69 ----v~-~-~~~l~~~d-~~~g~~~~~~---~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~  138 (297)
T 3g4e_A           69 ----AT-I-GTKFCALN-WKEQSAVVLA---TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD  138 (297)
T ss_dssp             ----EE-E-TTEEEEEE-TTTTEEEEEE---ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT
T ss_pred             ----EE-E-CCeEEEEE-CCCCcEEEEE---ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC
Confidence                33 2 45677776 3221110000   00001123458899999999988765 32         23455555433


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc--CCCceec-ccccccccccCCCCcccccccc
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM--RQSALCD-THSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                      +.....        ..+......++|+|++..++++.+.++.|.+|++  .++.... +.+..+..            +.
T Consensus       139 g~~~~~--------~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~------------~~  198 (297)
T 3g4e_A          139 HHVKKY--------FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK------------EE  198 (297)
T ss_dssp             SCEEEE--------EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG------------GG
T ss_pred             CCEEEE--------eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC------------CC
Confidence            333222        1123446789999999334456666899999997  4443211 01111111            12


Q ss_pred             ceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc
Q 015363          342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                      ..+..++++++|++.++.. .+.|..||.++ ++.+..+..+...
T Consensus       199 ~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~  242 (297)
T 3g4e_A          199 QIPDGMCIDAEGKLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDK  242 (297)
T ss_dssp             CEEEEEEEBTTSCEEEEEETTTEEEEECTTT-CCEEEEEECSSSB
T ss_pred             CCCCeeEECCCCCEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCC
Confidence            4678899999998777774 58899999986 7888888776433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.15  E-value=4.8e-09  Score=100.99  Aligned_cols=244  Identities=11%  Similarity=0.102  Sum_probs=141.7

Q ss_pred             eccceEEEEECCCCCeEEEe-----ecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATG-----DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      |...|..++|||||++||.+     +....|++||+.+++..                      ...+.  .        
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~----------------------~~~~~--~--------  174 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL----------------------ETPLK--D--------  174 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE----------------------EEEEE--E--------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC----------------------ccccC--C--------
Confidence            55678999999999998853     33357999999887631                      00011  0        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCC-------------eEEEEEcCCCcE--EEEeccCC-CCcccCCCCCeEeecC
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDK-------------TIKLWKVQEKKV--KKVFDWNV-HPEKAAGNGPIFGSHV  172 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~-------------~i~vwd~~~~~~--~~~~~~~~-~~~~~~~~~~v~~~~~  172 (408)
                          .+...++|+ +  |+.|+.++.+.             .|++|++.+...  ..+..... ++      ....    
T Consensus       175 ----~k~~~~~Ws-D--g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~------~~~~----  237 (693)
T 3iuj_A          175 ----VKFSGISWL-G--NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH------HRYV----  237 (693)
T ss_dssp             ----EESCCCEEE-T--TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC------CSEE----
T ss_pred             ----ceeccEEEe-C--CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC------eEEE----
Confidence                113578896 4  77888887764             399999887643  33333322 11      1122    


Q ss_pred             CceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE-Ee
Q 015363          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA  251 (408)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~  251 (408)
                         .+.++|||+.+....        ..+.....|.+++ +...+.     ..+.+ ..+....... +++++..|+ .+
T Consensus       238 ---~~~~SpDg~~l~~~~--------~~~~~~~~i~~~d-~~~~~~-----~~~~l-~~~~~~~~~~-~~~~g~~l~~~t  298 (693)
T 3iuj_A          238 ---GATVTEDDRFLLISA--------ANSTSGNRLYVKD-LSQENA-----PLLTV-QGDLDADVSL-VDNKGSTLYLLT  298 (693)
T ss_dssp             ---EEEECTTSCEEEEEE--------ESSSSCCEEEEEE-TTSTTC-----CCEEE-ECSSSSCEEE-EEEETTEEEEEE
T ss_pred             ---EEEEcCCCCEEEEEE--------ccCCCCcEEEEEE-CCCCCC-----ceEEE-eCCCCceEEE-EeccCCEEEEEE
Confidence               578999999872100        1122345778777 432211     11222 3333334443 556665554 44


Q ss_pred             -c---CCeEEEEeCCCCCc-eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe-CCC--eEEEEEcCCCceeccccc
Q 015363          252 -D---DLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRLIDMRQSALCDTHSK  323 (408)
Q Consensus       252 -~---d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~  323 (408)
                       .   .+.|..+|+..... ..+.       +..|...+.  .|++++ ..|+... .++  .|++||+..+..     .
T Consensus       299 ~~~~~~~~l~~~d~~~~~~~~~~~-------l~~~~~~~~--~~s~~g-~~lv~~~~~~g~~~l~~~d~~g~~~-----~  363 (693)
T 3iuj_A          299 NRDAPNRRLVTVDAANPGPAHWRD-------LIPERQQVL--TVHSGS-GYLFAEYMVDATARVEQFDYEGKRV-----R  363 (693)
T ss_dssp             CTTCTTCEEEEEETTSCCGGGCEE-------EECCCSSCE--EEEEET-TEEEEEEEETTEEEEEEECTTSCEE-----E
T ss_pred             CCCCCCCEEEEEeCCCCCccccEE-------EecCCCCEE--EEEEEC-CEEEEEEEECCeeEEEEEECCCCee-----E
Confidence             3   36899999985432 1121       233444444  889998 5555554 454  688999875432     2


Q ss_pred             ccccccCCCCccccccccceeEEEEEccCCCEEEEe-CC----CeEEEEECCC
Q 015363          324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY----MTLKLWDINM  371 (408)
Q Consensus       324 ~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d----~~v~~wd~~~  371 (408)
                      .+....           .+.+..+.++|++..|+.. ++    ++|..||+.+
T Consensus       364 ~l~~p~-----------~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          364 EVALPG-----------LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             EECCSS-----------SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred             EeecCC-----------CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence            222111           2457778888888765543 22    8999999976

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.14  E-value=2.6e-08  Score=89.28  Aligned_cols=223  Identities=11%  Similarity=0.060  Sum_probs=131.2

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      .....|+|.  +++.++++...++.|++||..++...........                + .++++++++.+      
T Consensus       131 ~~P~~la~d--~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~----------------~-~ia~~~~g~~l------  185 (409)
T 3hrp_A          131 KYMWGIAAV--GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG----------------G-KPAVTKDKQRV------  185 (409)
T ss_dssp             CCEEEEEEC--STTEEEEEETTTTEEEEEETTTTEEEEEEETCCB----------------C-BCEECTTSSEE------
T ss_pred             CCceEEEEe--CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC----------------C-ceeEecCCCcE------
Confidence            357789995  4577777777789999999998877665443211                1 37888999876      


Q ss_pred             ccCccccCCCCCc--eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          193 ASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       193 ~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                            +.+..++  .|..++ ......   ..............+.+++++|++..|..+ .++.|+.||..... ...
T Consensus       186 ------~~~d~~~~~~I~~~d-~~~~~~---~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~~~  254 (409)
T 3hrp_A          186 ------YSIGWEGTHTVYVYM-KASGWA---PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-VTL  254 (409)
T ss_dssp             ------EEEBSSTTCEEEEEE-GGGTTC---EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-EEE
T ss_pred             ------EEEecCCCceEEEEE-cCCCce---eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-EEE
Confidence                  5555544  666666 221110   000000001133567889999954445446 78899999998443 211


Q ss_pred             EeecCCCcccCCcCCe-E-EEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccccc-CCCCcc--cccccccee
Q 015363          270 IVDVKPANMEDLTEVI-T-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTRS--FFTEIIASI  344 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v-~-~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~h~~~i  344 (408)
                      ....   ...++...- . .++|+|++..++++-..++.|+.|+.... .     ..+.++. ......  .........
T Consensus       255 ~~~~---~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~-----~~~~g~~~~~g~~dg~~~~~~~~~P  325 (409)
T 3hrp_A          255 IKQL---ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-C-----EWFCGSATQKTVQDGLREEALFAQP  325 (409)
T ss_dssp             EEEC---CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E-----EEEEECTTCCSCBCEEGGGCBCSSE
T ss_pred             Eecc---cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-E-----EEEEeCCCCCCcCCCcccccEeCCC
Confidence            1000   011112221 3 89999954277777777899999997643 1     2222221 000000  000011347


Q ss_pred             EEEEEccCCCEEEEeC-C-CeEEEEECCCCCCceeeeeec
Q 015363          345 SDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       345 ~~~~~spdg~~l~s~~-d-~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      ..++++|+|+++++-. . +.|+.|++.+ + .+.++.++
T Consensus       326 ~gia~d~dG~lyvad~~~~~~I~~~~~~~-G-~v~~~~g~  363 (409)
T 3hrp_A          326 NGMTVDEDGNFYIVDGFKGYCLRKLDILD-G-YVSTVAGQ  363 (409)
T ss_dssp             EEEEECTTCCEEEEETTTTCEEEEEETTT-T-EEEEEEEC
T ss_pred             eEEEEeCCCCEEEEeCCCCCEEEEEECCC-C-EEEEEeCC
Confidence            8999999999777765 4 8999999764 4 35666555

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.10  E-value=3.4e-08  Score=85.24  Aligned_cols=208  Identities=6%  Similarity=-0.001  Sum_probs=125.2

Q ss_pred             eccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeee-ccCCccccccccccc
Q 015363           34 EVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSLEI  111 (408)
Q Consensus        34 h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~~~~  111 (408)
                      +...+.+++++++ |+++++.. .+.|.+|+.+ ++..                        .+ ......       ..
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~------------------------~~~~~~~~~-------~~  115 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFE------------------------EIAKKDSEG-------RR  115 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEE------------------------ECCSBCTTS-------CB
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEE------------------------EEEeccCCC-------cc
Confidence            4567899999999 77555544 4478889976 4321                        11 000000       00


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCC---------------CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCcee
Q 015363          112 EEKINKIRWCQSANSALYLLSTND---------------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP  176 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d---------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (408)
                      ...+.++++.  ++|.++++...+               +.|..|+.. ++........                ..+..
T Consensus       116 ~~~~~~i~~d--~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~----------------~~~~~  176 (314)
T 1pjx_A          116 MQGCNDCAFD--YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF----------------QFPNG  176 (314)
T ss_dssp             CBCCCEEEEC--TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE----------------SSEEE
T ss_pred             ccCCcCEEEC--CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC----------------CCcce
Confidence            0347889995  558777766554               567777765 5443322111                11125


Q ss_pred             eEEc----cCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccc-cceEEEEeCCCCCEEEEe
Q 015363          177 KSYM----ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA  251 (408)
Q Consensus       177 ~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~  251 (408)
                      ++++    ++++.+           +++...++.|.+|+ ............... ...+. ..+..++++++|+++++.
T Consensus       177 i~~~~~~d~dg~~l-----------~v~~~~~~~i~~~~-~~~~g~~~~~~~~~~-~~~~~~~~p~~i~~d~~G~l~v~~  243 (314)
T 1pjx_A          177 IAVRHMNDGRPYQL-----------IVAETPTKKLWSYD-IKGPAKIENKKVWGH-IPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEECTTSCEEEE-----------EEEETTTTEEEEEE-EEETTEEEEEEEEEE-CCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             EEEecccCCCCCEE-----------EEEECCCCeEEEEE-CCCCCccccceEEEE-CCCCCCCCCCceEECCCCCEEEEE
Confidence            7788    888654           24445678899888 431111000011111 12333 557889999999988887


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCc-eEEEEeCCCeEEEEEcCCC
Q 015363          252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~  315 (408)
                       .++.|.+||.++.. ....       +..+...+.+++|+|++ + ++++...++.|..|++...
T Consensus       244 ~~~~~i~~~d~~~g~-~~~~-------~~~~~~~~~~i~~~~dg-~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          244 WGSSHIEVFGPDGGQ-PKMR-------IRCPFEKPSNLHFKPQT-KTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             ETTTEEEEECTTCBS-CSEE-------EECSSSCEEEEEECTTS-SEEEEEETTTTEEEEEECSSC
T ss_pred             cCCCEEEEEcCCCCc-EeEE-------EeCCCCCceeEEECCCC-CEEEEEeCCCCeEEEEeCCCC
Confidence             78999999987333 3332       22234678999999999 6 5555556789999998754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.10  E-value=1e-08  Score=89.71  Aligned_cols=78  Identities=6%  Similarity=0.037  Sum_probs=56.5

Q ss_pred             EEEcCCCCceEEEE-e---C-----CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC-EEE
Q 015363          288 AEFHPTHCNMLAYS-S---S-----KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HIL  357 (408)
Q Consensus       288 ~~~~p~~~~~l~s~-~---~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~-~l~  357 (408)
                      +.++|++ ..++.+ .   .     ++.+.++|+.+.+.+    ..+...             .....++|+|||+ .++
T Consensus       269 v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~vg-------------~~p~gi~~s~Dg~~l~v  330 (368)
T 1mda_H          269 VAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISNG-------------HDSDAIIAAQDGASDNY  330 (368)
T ss_dssp             EEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEEE-------------EEECEEEECCSSSCEEE
T ss_pred             eEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEECC-------------CCcceEEECCCCCEEEE
Confidence            6899999 555443 3   2     235669999998765    444433             3578899999998 445


Q ss_pred             EeC--CCeEEEEECCCCCCceeeeeeccc
Q 015363          358 SRD--YMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       358 s~~--d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      +..  ++.|.++|+.+ ++.++++.....
T Consensus       331 a~~~~~~~VsVID~~t-~kvv~~I~vg~~  358 (368)
T 1mda_H          331 ANSAGTEVLDIYDAAS-DQDQSSVELDKG  358 (368)
T ss_dssp             EEETTTTEEEEEESSS-CEEEEECCCCSC
T ss_pred             EccCCCCeEEEEECCC-CcEEEEEECCCC
Confidence            544  69999999998 788888876544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.09  E-value=3.4e-09  Score=93.01  Aligned_cols=170  Identities=8%  Similarity=0.021  Sum_probs=111.3

Q ss_pred             eeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccc-----ccccccceeeccccccceEEEEeCCCCCEEEE
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET-----NLVAGCRRIYAHAHDYHINSISNNSDGETFIS  250 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~  250 (408)
                      .+++++....+            ++++.++ +.+|+ ......     ....++..  ...+.. |+.++|  ++++|++
T Consensus        42 lLais~~~gll------------~a~~~~~-l~v~~-~~~l~~~~~~~~~~~~~~~--~~~lp~-V~~l~f--d~~~L~v  102 (388)
T 1xip_A           42 NLDISNSKSLF------------VAASGSK-AVVGE-LQLLRDHITSDSTPLTFKW--EKEIPD-VIFVCF--HGDQVLV  102 (388)
T ss_dssp             CEEEETTTTEE------------EEEETTE-EEEEE-HHHHHHHHHSSSCCCCCSE--EEECTT-EEEEEE--ETTEEEE
T ss_pred             EEEEcCCCCEE------------EEeCCCE-EEEEE-hhHhhhhhccccccccceE--EeeCCC-eeEEEE--CCCEEEE
Confidence            57888888886            7777764 44487 433220     00011111  123455 999999  9999999


Q ss_pred             ecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC
Q 015363          251 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  330 (408)
Q Consensus       251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  330 (408)
                      +.++.|++||++...+...        ...|...+.++.+.+.  + +++++.||.|.+||+..+...    .    +  
T Consensus       103 ~~~~~l~v~dv~sl~~~~~--------~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~----~----~--  161 (388)
T 1xip_A          103 STRNALYSLDLEELSEFRT--------VTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTK----Q----L--  161 (388)
T ss_dssp             EESSEEEEEESSSTTCEEE--------EEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEE----E----E--
T ss_pred             EcCCcEEEEEchhhhccCc--------cceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCccc----c----c--
Confidence            9889999999985553322        2335566777776644  3 888899999999999977542    1    1  


Q ss_pred             CCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCc--eeeee---------ecccccceEEecCCCee
Q 015363          331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP--VATFQ---------VHEHLRPKVMHSSKNYF  397 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~  397 (408)
                                ...|++++|||+| ..+.+.||.+++|+.+. +..  .+++.         +|......+..+.+..+
T Consensus       162 ----------~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~-~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~f  227 (388)
T 1xip_A          162 ----------AQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRN-GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDF  227 (388)
T ss_dssp             ----------EESEEEEEECSSE-EEEEETTSCEEEEEEET-TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEE
T ss_pred             ----------cCCceEEEEcCCc-eEEEEcCCcEEEEcCCC-ccccccceecCCcccccccCCCeeEEEEEEecCCeE
Confidence                      2579999999999 34444689999998875 343  44552         24444555554544443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.05  E-value=3.5e-08  Score=86.43  Aligned_cols=240  Identities=10%  Similarity=0.047  Sum_probs=137.5

Q ss_pred             eeccceEEEEECCCCCeEEEeec-----CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDR-----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      .|...+..++++++|+++++-..     ++.|.+||..+++.                       +..+.-....     
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~-----------------------~~~~~~~~~~-----  115 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQL-----------------------SRVIYLPPPI-----  115 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEE-----------------------EEEEECCTTT-----
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeE-----------------------EEEEECChhh-----
Confidence            46678999999999987666543     57899999886642                       1111111000     


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEe---CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLST---NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG  184 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  184 (408)
                       ......+..+++.|. ++..+++-.   .++.|.+||+.+++.......+....   +.           ...+.++|.
T Consensus       116 -~~~~~~~~~v~vd~~-~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~---~~-----------~~~~~~~g~  179 (343)
T 2qe8_A          116 -TLSNSFVNDLAVDLI-HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA---PE-----------DIDLVIDGV  179 (343)
T ss_dssp             -SCTTCCCCEEEEETT-TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS---CC-----------SCCCEETTE
T ss_pred             -cccccccceEEEecC-CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc---cc-----------ccceeECCE
Confidence             000134688999643 244445544   67899999999888766553321100   00           012233444


Q ss_pred             eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c-CCeEEEEeCC
Q 015363          185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLE  262 (408)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~iwd~~  262 (408)
                      .+            .+...++.++.|.                      ..++.|+|+|+++.|+.+ . ...+..++..
T Consensus       180 ~~------------~~~~~~g~~~~~~----------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~  225 (343)
T 2qe8_A          180 PV------------QIGQPDGTVIRPH----------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSA  225 (343)
T ss_dssp             EC------------BEECTTSCEECCC----------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred             EE------------EeccCCCceecee----------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence            33            3334445444443                      236789999999988877 4 4455555532


Q ss_pred             C--CCce--eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc
Q 015363          263 I--SNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT  338 (408)
Q Consensus       263 ~--~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (408)
                      .  ....  .+..  ......++......++++++| .++++...++.|.+||..+++..     .+....         
T Consensus       226 ~~~~~~~~~~~~~--~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~-----~~~~~~---------  288 (343)
T 2qe8_A          226 DLSNLQLTDAELG--SKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYK-----LLVTDE---------  288 (343)
T ss_dssp             HHTCTTCCHHHHH--TTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEE-----EEEECG---------
T ss_pred             HhcCCCCChhhhh--cceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEE-----EEEECC---------
Confidence            1  0000  0000  000011223345679999999 89998888999999998555421     111110         


Q ss_pred             cccceeEEEEEccCCCEEEEeCC-CeEEEEE
Q 015363          339 EIIASISDIKFARNGRHILSRDY-MTLKLWD  368 (408)
Q Consensus       339 ~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd  368 (408)
                       +...+.+++|.++|+++++.+. +.+.+|.
T Consensus       289 -~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          289 -KLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             -GGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             -ceecCCeeEECCCCcEEEEeCccccccccc
Confidence             1246889999999988887753 4444443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.00  E-value=1.2e-07  Score=81.63  Aligned_cols=212  Identities=13%  Similarity=0.073  Sum_probs=123.6

Q ss_pred             cceeEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      .......|.|+  |. ++++...++.|..|+. +++........         +.+       ..+++.++|+.+     
T Consensus        45 ~~~egp~~~~~--g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~---------~~~-------~gl~~d~dG~l~-----  100 (305)
T 3dr2_A           45 TWSEGPAWWEA--QRTLVWSDLVGRRVLGWRE-DGTVDVLLDAT---------AFT-------NGNAVDAQQRLV-----  100 (305)
T ss_dssp             SSEEEEEEEGG--GTEEEEEETTTTEEEEEET-TSCEEEEEESC---------SCE-------EEEEECTTSCEE-----
T ss_pred             cCccCCeEeCC--CCEEEEEECCCCEEEEEeC-CCCEEEEeCCC---------Ccc-------ceeeECCCCCEE-----
Confidence            33678899765  66 5666678899999998 45433222111         112       267889999865     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE----e-c-------------C
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----A-D-------------D  253 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~----~-~-------------d  253 (408)
                             ++...++.|..|+ ... ...   .............++.++++|+|+++++    | .             .
T Consensus       101 -------v~~~~~~~v~~~~-~~g-~~~---~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~  168 (305)
T 3dr2_A          101 -------HCEHGRRAITRSD-ADG-QAH---LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH  168 (305)
T ss_dssp             -------EEETTTTEEEEEC-TTS-CEE---EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred             -------EEECCCCEEEEEC-CCC-CEE---EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence                   4444556677766 211 100   0000000111134678999999998886    3 1             2


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC------CeEEEEEcCCCceeccccccccc
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEE  327 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~  327 (408)
                      +.|..||..++ ....+        . .......++|+|++ +.|+.+...      +.|.+|++..+....  ...+..
T Consensus       169 ~~v~~~d~~~g-~~~~~--------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~--~~~~~~  235 (305)
T 3dr2_A          169 HSVYRLPPDGS-PLQRM--------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHD--RRHFAS  235 (305)
T ss_dssp             EEEEEECSSSC-CCEEE--------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEE--EEEEEC
T ss_pred             CeEEEEcCCCC-cEEEE--------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccC--CeEEEE
Confidence            45677776532 22221        1 23345789999999 766666554      789999987653110  011110


Q ss_pred             ccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccc
Q 015363          328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRP  387 (408)
Q Consensus       328 ~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~  387 (408)
                      ..           ...+..++++++|++.++. .+.|.+|+.+  ++.+..+..+.....
T Consensus       236 ~~-----------~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~~~~  281 (305)
T 3dr2_A          236 VP-----------DGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGTASN  281 (305)
T ss_dssp             CS-----------SSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSCCCE
T ss_pred             CC-----------CCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCceeE
Confidence            00           1234568899999955555 4459999983  688888876654333

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.92  E-value=8.8e-08  Score=92.23  Aligned_cols=218  Identities=7%  Similarity=0.019  Sum_probs=119.1

Q ss_pred             cceeEEEEeecCCCcEEEEEe-----CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          113 EKINKIRWCQSANSALYLLST-----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                      ..+..++|+|  ||+++|.+.     .+..|++||+.+++.........                ....++|+ ||+.+.
T Consensus       129 ~~l~~~~~Sp--Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~----------------k~~~~~Ws-Dg~~l~  189 (693)
T 3iuj_A          129 TALDQLSFSR--DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV----------------KFSGISWL-GNEGFF  189 (693)
T ss_dssp             CEEEEEEECT--TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE----------------ESCCCEEE-TTTEEE
T ss_pred             EEEEEEEECC--CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc----------------eeccEEEe-CCCEEE
Confidence            4588889965  488888643     33589999999998654311100                00147888 888762


Q ss_pred             cccccccC-ccccCCCCCceeeeceeeeccccccccccceeeccc-cccceEEEEeCCCCCEEEEe-----cCCeEEEEe
Q 015363          188 RNFGCASN-DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-----DDLRINLWN  260 (408)
Q Consensus       188 ~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~-----~d~~i~iwd  260 (408)
                      ........ .-+........|++|+ +.....  ....+... .. |...+..+.|+|||++|+..     .+..|+++|
T Consensus       190 y~~~~~~~~~~~~~~~~~~~v~~~~-lgt~~~--~~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  265 (693)
T 3iuj_A          190 YSSYDKPDGSELSARTDQHKVYFHR-LGTAQE--DDRLVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD  265 (693)
T ss_dssp             EEESSCCC-------CCCCEEEEEE-TTSCGG--GCEEEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred             EEEecCcccccccccCCCcEEEEEE-CCCCcc--cceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence            11100000 0000001224477666 322110  00111111 22 34457789999999988653     235899999


Q ss_pred             CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCCceecccccccccccCCCCcccc
Q 015363          261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF  337 (408)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (408)
                      +.........       +..+....... +++++..+++....+   +.|..+|+.++..  ...+.+..+.        
T Consensus       266 ~~~~~~~~~~-------l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~--------  327 (693)
T 3iuj_A          266 LSQENAPLLT-------VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP--AHWRDLIPER--------  327 (693)
T ss_dssp             TTSTTCCCEE-------EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCC--------
T ss_pred             CCCCCCceEE-------EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc--cccEEEecCC--------
Confidence            9855433322       23334444444 667773555555443   6899999987642  1112333332        


Q ss_pred             ccccceeEEEEEccCCCEEEEe--CCC--eEEEEECCCCCCceeee
Q 015363          338 TEIIASISDIKFARNGRHILSR--DYM--TLKLWDINMDSGPVATF  379 (408)
Q Consensus       338 ~~h~~~i~~~~~spdg~~l~s~--~d~--~v~~wd~~~~~~~~~~~  379 (408)
                          ..+.  .|++++++|+..  .++  .|++|+++.  ...+.+
T Consensus       328 ----~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g--~~~~~l  365 (693)
T 3iuj_A          328 ----QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG--KRVREV  365 (693)
T ss_dssp             ----SSCE--EEEEETTEEEEEEEETTEEEEEEECTTS--CEEEEE
T ss_pred             ----CCEE--EEEEECCEEEEEEEECCeeEEEEEECCC--CeeEEe
Confidence                2343  899999988866  243  788998863  444444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.91  E-value=1.1e-06  Score=77.61  Aligned_cols=218  Identities=7%  Similarity=0.047  Sum_probs=114.7

Q ss_pred             eeEEEEeecCCCcEEEEEeCC------CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          115 INKIRWCQSANSALYLLSTND------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      -..+..+  ++| +++++..+      +.|.+.|..+.+.+........+     .+.-+       .++|+|+++.+.+
T Consensus       140 Ph~~~~~--pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~-----~~~~Y-------d~~~~p~~~~mvs  204 (462)
T 2ece_A          140 LHTVHCG--PDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGD-----QYLAY-------DFWWNLPNEVLVS  204 (462)
T ss_dssp             EEEEEEC--SSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTT-----CCCCC-------CEEEETTTTEEEE
T ss_pred             ccceeEC--CCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCC-----ccccc-------eEEECCCCCEEEE
Confidence            3445564  447 66666544      78999999999988877643222     11111       4788999987622


Q ss_pred             cc-c--------cccCccccCCCCCceeeeceeeeccccccccccceeeccc-cccceEEEEe--CCCCCEEEEe-c---
Q 015363          189 NF-G--------CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISN--NSDGETFISA-D---  252 (408)
Q Consensus       189 ~~-~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~--~~~~~~l~~~-~---  252 (408)
                      .. +        ........  .....|.+|| +...      +..+.+..+ .......+.|  +|+++++.++ .   
T Consensus       205 S~wg~p~~~~~g~~~~~~~~--~~~d~V~v~D-~~~~------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~  275 (462)
T 2ece_A          205 SEWAVPNTIEDGLKLEHLKD--RYGNRIHFWD-LRKR------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL  275 (462)
T ss_dssp             CBCCCHHHHTTCCCTTTHHH--HSCCEEEEEE-TTTT------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET
T ss_pred             ccCcCccccccccchhhhhh--ccCCEEEEEE-CCCC------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeec
Confidence            21 0        00000000  3478899999 4331      112222121 1233445555  9999887765 4   


Q ss_pred             ---CCeEEEEeCCCCCc--eeeEeecCCCcccC-----------CcCCeEEEEEcCCCCceEEEEe-CCCeEEEEEcCCC
Q 015363          253 ---DLRINLWNLEISNQ--SFNIVDVKPANMED-----------LTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQS  315 (408)
Q Consensus       253 ---d~~i~iwd~~~~~~--~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~  315 (408)
                         +++|.+|..+. +.  ..+.+++......+           -......|.++||| ++|.++. ..+.|.+||+...
T Consensus       276 ~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG-rfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          276 KDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD-KFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             TTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS-CEEEEEETTTTEEEEEECSST
T ss_pred             cCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC-CEEEEEeCCCCEEEEEEecCC
Confidence               45887777653 32  12222222111110           02346789999999 6555554 4789999998633


Q ss_pred             ceecccccccccccC-CCCcccccc--ccceeEEEEEccCCCEEEEeC
Q 015363          316 ALCDTHSKLFEEQEA-PGTRSFFTE--IIASISDIKFARNGRHILSRD  360 (408)
Q Consensus       316 ~~~~~~~~~~~~~~~-~~~~~~~~~--h~~~i~~~~~spdg~~l~s~~  360 (408)
                      ... +.+..+..... ..... ..+  -.+....+.++|||++|+++.
T Consensus       354 ~~~-~lv~~I~tGG~~~~~~~-~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          354 FKP-VLTGKVKLGGIFHRADH-PAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSC-EEEEEEECBTTTTCBCC-TTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCc-EEEEEEEeCCeeccccc-cccccCCCCCCEEEEcCCCCEEEEEc
Confidence            111 00111111000 00000 000  011357789999999998876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.90  E-value=1.1e-06  Score=76.21  Aligned_cols=208  Identities=9%  Similarity=0.032  Sum_probs=122.6

Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      ..+..|+|+ .+.++++...++.|..||..+++.... ...         ..+.       .+.+.++|+.+        
T Consensus        51 ~egp~~~~~-~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~---------~~v~-------~i~~~~dg~l~--------  104 (326)
T 2ghs_A           51 GEGPTFDPA-SGTAWWFNILERELHELHLASGRKTVH-ALP---------FMGS-------ALAKISDSKQL--------  104 (326)
T ss_dssp             EEEEEEETT-TTEEEEEEGGGTEEEEEETTTTEEEEE-ECS---------SCEE-------EEEEEETTEEE--------
T ss_pred             CcCCeEeCC-CCEEEEEECCCCEEEEEECCCCcEEEE-ECC---------Ccce-------EEEEeCCCeEE--------
Confidence            457789754 244666666789999999988765432 221         1222       67888998865        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeecc-ccccceEEEEeCCCCCEEEEe-cC------CeEEEEeCCCCCc
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAH-AHDYHINSISNNSDGETFISA-DD------LRINLWNLEISNQ  266 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~-~d------~~i~iwd~~~~~~  266 (408)
                          ++. .+ .|.+|| .........    ..... .....++.++++|+|+++++. .+      +.|..++   .+.
T Consensus       105 ----v~~-~~-gl~~~d-~~~g~~~~~----~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~---~g~  170 (326)
T 2ghs_A          105 ----IAS-DD-GLFLRD-TATGVLTLH----AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA---KGK  170 (326)
T ss_dssp             ----EEE-TT-EEEEEE-TTTCCEEEE----ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE---TTE
T ss_pred             ----EEE-CC-CEEEEE-CCCCcEEEE----eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe---CCc
Confidence                332 33 377766 322111100    00000 112468899999999987765 32      4455555   233


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCceE-EEEeCCCeEEEEEcC--CC-ceecccccccccccCCCCccccccccc
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMR--QS-ALCDTHSKLFEEQEAPGTRSFFTEIIA  342 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~  342 (408)
                      ...+        ..+......++|+|++ +.| ++.+.++.|.+||+.  ++ .....  ..+...         .....
T Consensus       171 ~~~~--------~~~~~~~~~i~~s~dg-~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~--~~~~~~---------~~~~~  230 (326)
T 2ghs_A          171 VTKL--------FADISIPNSICFSPDG-TTGYFVDTKVNRLMRVPLDARTGLPTGKA--EVFIDS---------TGIKG  230 (326)
T ss_dssp             EEEE--------EEEESSEEEEEECTTS-CEEEEEETTTCEEEEEEBCTTTCCBSSCC--EEEEEC---------TTSSS
T ss_pred             EEEe--------eCCCcccCCeEEcCCC-CEEEEEECCCCEEEEEEcccccCCcccCc--eEEEEC---------CCCCC
Confidence            3221        1123346789999999 655 454557899999986  44 32100  111100         00124


Q ss_pred             eeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeeccc
Q 015363          343 SISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       343 ~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      .+..++++++|.+.++. .++.|..||..  ++.+..+..+..
T Consensus       231 ~p~gi~~d~~G~lwva~~~~~~v~~~d~~--g~~~~~i~~~~~  271 (326)
T 2ghs_A          231 GMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGK  271 (326)
T ss_dssp             EEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECSCS
T ss_pred             CCCeeEECCCCCEEEEEeCCCEEEEECCC--CCEEEEEECCCC
Confidence            56789999999877776 45899999983  677777765543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.88  E-value=9.8e-06  Score=71.52  Aligned_cols=260  Identities=6%  Similarity=-0.061  Sum_probs=140.0

Q ss_pred             EECCCCCeEEEeec--CC---eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccccee
Q 015363           42 EFDKSGDHLATGDR--GG---RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (408)
Q Consensus        42 ~~s~~~~~l~sg~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  116 (408)
                      ...|+++++++...  ..   +|.++|..+++.                       +..+....            . - 
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~-----------------------~~~i~~g~------------~-p-   69 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-----------------------LGHVNGGF------------L-P-   69 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeE-----------------------EEEecCCC------------C-C-
Confidence            34477887776653  22   789999877652                       22222221            2 2 


Q ss_pred             EEEEeecCCCcEEEEEe----------CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                      .++++|+  |++++++.          .++.|.+||..+.+.............        .....+-.+.++|+|+.+
T Consensus        70 ~i~~spD--g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~--------~~g~~p~~~~~spDG~~l  139 (373)
T 2mad_H           70 NPVAAHS--GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF--------DVGPYSWMNANTPNNADL  139 (373)
T ss_pred             CeEECCC--CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc--------ccCCCccceEECCCCCEE
Confidence            7889655  88888875          367899999998877665544210000        000112258999999998


Q ss_pred             ecccccccCccccCCCC--Cceeeeceeeecccccccccccee-eccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeC
Q 015363          187 ERNFGCASNDSSFPPGG--VSSLRLPVVVTSQETNLVAGCRRI-YAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNL  261 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~  261 (408)
                                  +.+..  ++.|.++| -..       +.... + .. .   .++.+.|++. .+++. .||.+.++|.
T Consensus       140 ------------~v~n~~~~~~v~viD-~t~-------~~~~~~i-~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          140 ------------LFFQFAAGPAVGLVV-QGG-------SSDDQLL-SS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             ------------EEEecCCCCeEEEEE-CCC-------CEEeEEc-CC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC
Confidence                        54432  46677755 211       11111 1 11 0   1244556653 33444 7899999999


Q ss_pred             CCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363          262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                       +.+.... ....+. +.+.........+.+++ ..++..+..+.+.+.|+.......  +..+.........  ..-..
T Consensus       195 -~g~~~~~-~~~~~~-~~~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~~--~~~~p  266 (373)
T 2mad_H          195 -AGGAAGA-GLVGAM-LTAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGRKA--DTWRP  266 (373)
T ss_pred             -CCcEEEE-Eecccc-ccCCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCcccc--cceec
Confidence             4543311 111000 11111112345677776 444444478899999997653210  0111100000000  00001


Q ss_pred             ceeEEEEEccCCCEEEEeC-----------CCeEEEEECCCCCCceeeeeec
Q 015363          342 ASISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~s~~-----------d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      .....+.++||++.|+.+.           .+.|.++|+.+ ++.++++...
T Consensus       267 ~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g  317 (373)
T 2mad_H          267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLG  317 (373)
T ss_pred             CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECC
Confidence            2344578999998877652           15799999998 6888887653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.87  E-value=1.3e-07  Score=86.36  Aligned_cols=124  Identities=10%  Similarity=0.079  Sum_probs=79.0

Q ss_pred             ceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCcee--------eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC
Q 015363          235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSF--------NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK  304 (408)
Q Consensus       235 ~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  304 (408)
                      ...++.++|||++++++  .+.+|.++|+.+....+        .+.    .+.. -......++|+|+| ..+++.--|
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~----~~v~-vG~gP~h~aF~~dG-~aY~t~~ld  351 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV----AEPE-LGLGPLHTAFDGRG-NAYTSLFLD  351 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE----ECCB-CCSCEEEEEECTTS-EEEEEETTT
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE----EEcC-CCCCcceEEECCCC-eEEEEEecC
Confidence            45678999999988876  79999999998432100        000    0111 23457899999999 877788889


Q ss_pred             CeEEEEEcCCCc------eecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe---CCCeE-----------
Q 015363          305 GSIRLIDMRQSA------LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DYMTL-----------  364 (408)
Q Consensus       305 g~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~---~d~~v-----------  364 (408)
                      ++|..||+.+..      .....+..+..|-.       .+|...-..+.++|||++|+++   +-..+           
T Consensus       352 sqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq-------pGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~  424 (595)
T 1fwx_A          352 SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-------PGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPEND  424 (595)
T ss_dssp             TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-------EEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEE
T ss_pred             CcEEEEEhhHhhhhhcccccceeEEEeecccc-------cccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcc
Confidence            999999998621      11111233333310       1232222334668999999987   31345           


Q ss_pred             EEEECCC
Q 015363          365 KLWDINM  371 (408)
Q Consensus       365 ~~wd~~~  371 (408)
                      .++|+..
T Consensus       425 ql~dis~  431 (595)
T 1fwx_A          425 QLIDISG  431 (595)
T ss_dssp             EEEECSS
T ss_pred             eEEEcCC
Confidence            8999964

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.86  E-value=2.1e-06  Score=75.03  Aligned_cols=79  Identities=10%  Similarity=0.031  Sum_probs=46.8

Q ss_pred             CeEEEEEcCCCCceEEEEeCCC-eEEEEEcCC---Cceecc-cccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363          284 VITSAEFHPTHCNMLAYSSSKG-SIRLIDMRQ---SALCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  358 (408)
Q Consensus       284 ~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s  358 (408)
                      .+..|+|+|++ +.|+++..++ .|..++...   +..... ....+..          .++......++++++|.++++
T Consensus       196 ~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~g~pdgia~d~~G~l~va  264 (343)
T 2qe8_A          196 GVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER----------YSEKPICDGISIDKDHNIYVG  264 (343)
T ss_dssp             CEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE----------EEECCSCSCEEECTTCCEEEE
T ss_pred             ccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe----------cccCCCCceEEECCCCCEEEE
Confidence            36789999999 7777776655 555554321   110000 0000000          011234567899999998888


Q ss_pred             eC-CCeEEEEECCCCCC
Q 015363          359 RD-YMTLKLWDINMDSG  374 (408)
Q Consensus       359 ~~-d~~v~~wd~~~~~~  374 (408)
                      .. .+.|.+||..+ ++
T Consensus       265 ~~~~~~V~~~d~~~-G~  280 (343)
T 2qe8_A          265 DLAHSAIGVITSAD-RA  280 (343)
T ss_dssp             EGGGTEEEEEETTT-TE
T ss_pred             ccCCCeEEEEECCC-CC
Confidence            75 59999999844 44

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.84  E-value=5e-09  Score=92.70  Aligned_cols=186  Identities=11%  Similarity=0.015  Sum_probs=95.6

Q ss_pred             CCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCC
Q 015363          125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV  204 (408)
Q Consensus       125 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  204 (408)
                      ++..+++++.|+.|+.||..+++.+..... . .        +.       ......++..+            ++++.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-~--------~~-------s~p~~~~g~~~------------v~~s~d   58 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-P--------VL-------QVPTHVEEPAF------------LPDPND   58 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-C--------SC-------CCC-----CCE------------EECTTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C-C--------ce-------ecceEcCCCEE------------EEeCCC
Confidence            356899999999999999999998876655 1 1        10       12223344443            666789


Q ss_pred             ceeeeceeeeccccccccccceeeccccc-cceE-EEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCC
Q 015363          205 SSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHIN-SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL  281 (408)
Q Consensus       205 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~-~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  281 (408)
                      +.|..|| ....+..      ... ..+. ..+. +..+. .+..++++ .++.|+.||.++++.....        ..+
T Consensus        59 g~l~a~d-~~tG~~~------w~~-~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~--------~~~  121 (369)
T 2hz6_A           59 GSLYTLG-SKNNEGL------TKL-PFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL--------SSA  121 (369)
T ss_dssp             CCEEEC------CCS------EEC-SCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------
T ss_pred             CEEEEEE-CCCCcee------eee-eccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe--------cCC
Confidence            9999998 4332221      111 1110 0110 00111 34456666 8899999999965544332        222


Q ss_pred             cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC----CCEEE
Q 015363          282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN----GRHIL  357 (408)
Q Consensus       282 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd----g~~l~  357 (408)
                      .    ...++|++ ..+++++.|+.|+.||.++++.+    ..+...              ......++++    +.+++
T Consensus       122 ~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~~----W~~~~~--------------~~~~~~~~~~~~~~~~v~~  178 (369)
T 2hz6_A          122 F----ADSLSPST-SLLYLGRTEYTITMYDTKTRELR----WNATYF--------------DYAASLPEDDVDYKMSHFV  178 (369)
T ss_dssp             ----------------EEEEEEEEEEECCCSSSSSCC----CEEEEE--------------EECCBCCCCCTTCCCCEEE
T ss_pred             C----cccccccC-CEEEEEecCCEEEEEECCCCCEE----EeEecc--------------cccCccccCCccccceEEE
Confidence            1    23456777 78888899999999999998654    222211              1112223332    45555


Q ss_pred             EeCCCeEEEEECCCCCCceeeee
Q 015363          358 SRDYMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       358 s~~d~~v~~wd~~~~~~~~~~~~  380 (408)
                      ++.++.|..||.++ |+.+-.+.
T Consensus       179 ~~~dg~v~a~d~~t-G~~~W~~~  200 (369)
T 2hz6_A          179 SNGDGLVVTVDSES-GDVLWIQN  200 (369)
T ss_dssp             EETSCEEEEECTTT-CCEEEEEE
T ss_pred             ECCCCEEEEEECCC-CcEEEEec
Confidence            45679999999997 67766665

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.81  E-value=1.5e-05  Score=66.83  Aligned_cols=207  Identities=10%  Similarity=0.093  Sum_probs=119.4

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..+..++|.|. ++.++++-..++.|..+++.++..........               ..+..+++.+++..+      
T Consensus        36 ~~~~gi~~d~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~---------------~~p~~ia~d~~~~~l------   93 (267)
T 1npe_A           36 KVIIGLAFDCV-DKVVYWTDISEPSIGRASLHGGEPTTIIRQDL---------------GSPEGIALDHLGRTI------   93 (267)
T ss_dssp             EEEEEEEEETT-TTEEEEEETTTTEEEEEESSSCCCEEEECTTC---------------CCEEEEEEETTTTEE------
T ss_pred             CcEEEEEEecC-CCEEEEEECCCCEEEEEecCCCCcEEEEECCC---------------CCccEEEEEecCCeE------
Confidence            34778999653 23444455567899999998765433322110               112267888876655      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--c--CCeEEEEeCCCCCcee
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--DLRINLWNLEISNQSF  268 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~  268 (408)
                           +++....+.|.+++ .....       ...+..........++++|++..|..+  .  .+.|..++++ +....
T Consensus        94 -----yv~d~~~~~I~~~~-~~g~~-------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~  159 (267)
T 1npe_A           94 -----FWTDSQLDRIEVAK-MDGTQ-------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRR  159 (267)
T ss_dssp             -----EEEETTTTEEEEEE-TTSCS-------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCE
T ss_pred             -----EEEECCCCEEEEEE-cCCCC-------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcE
Confidence                 24444556777766 32211       111111122456899999976555444  3  4788888887 32221


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      .+.       .........++++|++..++++-...+.|.++|+......    ..+...             .....++
T Consensus       160 ~~~-------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~----~~~~~~-------------~~P~gi~  215 (267)
T 1npe_A          160 ILA-------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR----KVLEGL-------------QYPFAVT  215 (267)
T ss_dssp             EEE-------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE----EEEECC-------------CSEEEEE
T ss_pred             EEE-------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE----EEecCC-------------CCceEEE
Confidence            111       1122456899999987355566666789999999754321    111111             1234555


Q ss_pred             EccCCCEEEEe-C-CCeEEEEECCCCCCceeeeeec
Q 015363          349 FARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       349 ~spdg~~l~s~-~-d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      ..  +..|+.+ . .+.|..+|..+ ++.++++...
T Consensus       216 ~d--~~~lyva~~~~~~v~~~d~~~-g~~~~~i~~g  248 (267)
T 1npe_A          216 SY--GKNLYYTDWKTNSVIAMDLAI-SKEMDTFHPH  248 (267)
T ss_dssp             EE--TTEEEEEETTTTEEEEEETTT-TEEEEEECCS
T ss_pred             Ee--CCEEEEEECCCCeEEEEeCCC-CCceEEEccc
Confidence            54  4455544 3 48999999987 6777777543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.81  E-value=2.4e-06  Score=74.75  Aligned_cols=260  Identities=8%  Similarity=0.024  Sum_probs=142.8

Q ss_pred             EEECCCCCeEEEeec-----CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           41 IEFDKSGDHLATGDR-----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        41 ~~~s~~~~~l~sg~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      ....|+++.+++...     ++.|.+.|..+.+.                       +..+....            .+ 
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-----------------------~~~I~vG~------------~P-   81 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-----------------------IGMIDGGF------------LP-   81 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-----------------------EEEEEECS------------SC-
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-----------------------EEEEECCC------------CC-
Confidence            455789988877765     67999999887653                       23333222            22 


Q ss_pred             eEEEEeecCCCcEEEEEe----------CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          116 NKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                       .++++|  +|++++++.          .++.|.+||..+.+....+......        -......+..+.++|||+.
T Consensus        82 -~va~sp--DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~--------r~~~g~~P~~~a~spDGk~  150 (386)
T 3sjl_D           82 -NPVVAD--DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP--------RFLVGTYPWMTSLTPDGKT  150 (386)
T ss_dssp             -EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC--------CCCBSCCGGGEEECTTSSE
T ss_pred             -cEEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc--------ccccCCCCceEEEcCCCCE
Confidence             388865  487777765          3678999999999887766543200        0000112236899999998


Q ss_pred             eecccccccCccccCCC--CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCC
Q 015363          186 GERNFGCASNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE  262 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~  262 (408)
                      +            +.+.  .++.|.++| +...+      ....+ ....  . ...+....+.+++. .||++.+.++.
T Consensus       151 l------------yVan~~~~~~VsVID-~~t~~------vv~tI-~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~  207 (386)
T 3sjl_D          151 L------------LFYQFSPAPAVGVVD-LEGKA------FKRML-DVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFG  207 (386)
T ss_dssp             E------------EEEECSSSCEEEEEE-TTTTE------EEEEE-ECCS--E-EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             E------------EEEEcCCCCeEEEEE-CCCCc------EEEEE-ECCC--c-ceeecCCCceeEEECCCCCEEEEECC
Confidence            7            5443  368899988 33221      11111 1000  0 11121122344443 67777777776


Q ss_pred             CCCceeeEeecCCCcccCCcCCeE-EEEEc-CCCCceEEEEeCCCeEEEEEcCCCce-eccccccccc--ccCCCCcccc
Q 015363          263 ISNQSFNIVDVKPANMEDLTEVIT-SAEFH-PTHCNMLAYSSSKGSIRLIDMRQSAL-CDTHSKLFEE--QEAPGTRSFF  337 (408)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~--~~~~~~~~~~  337 (408)
                      ..++......   ..+......+. ...|. ++| +++. .+.+|+|.+.|+.+... +..++..+..  -..       
T Consensus       208 ~~g~v~~~~~---~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~-------  275 (386)
T 3sjl_D          208 TEGTPEITHT---EVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD-------  275 (386)
T ss_dssp             SSSCCEEEEC---CCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHT-------
T ss_pred             CCCeEEEeec---ceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccccc-------
Confidence            4233221110   01111112221 24664 677 5444 56689999999976642 1111111110  000       


Q ss_pred             ccccceeEEEEEccCCCEEEEeC-----------CCeEEEEECCCCCCceeeeeecc
Q 015363          338 TEIIASISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       338 ~~h~~~i~~~~~spdg~~l~s~~-----------d~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                      .-.......++++|+++.|+...           .+.|.+.|+.+ ++.++.+..-.
T Consensus       276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~  331 (386)
T 3sjl_D          276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGH  331 (386)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEE
T ss_pred             cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCC
Confidence            00012333477799998887752           15799999998 78888876543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.74  E-value=4.2e-07  Score=79.57  Aligned_cols=71  Identities=3%  Similarity=-0.072  Sum_probs=51.9

Q ss_pred             EEeCCCCCEEEEe-c-C--------CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe-CCCeE
Q 015363          239 ISNNSDGETFISA-D-D--------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSI  307 (408)
Q Consensus       239 i~~~~~~~~l~~~-~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i  307 (408)
                      ++++|+++.+..+ . .        +.+.++|+.+.+ .+..+       .. ......++|+|++..++++.. .++.|
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~-vv~~i-------~v-g~~p~gi~~s~Dg~~l~va~~~~~~~V  339 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-TSGPI-------SN-GHDSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-EEECC-------EE-EEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe-EEEEE-------EC-CCCcceEEECCCCCEEEEEccCCCCeE
Confidence            6899999888765 4 3        367799999544 33332       21 124688999999944677777 59999


Q ss_pred             EEEEcCCCcee
Q 015363          308 RLIDMRQSALC  318 (408)
Q Consensus       308 ~iwd~~~~~~~  318 (408)
                      .++|+.+++.+
T Consensus       340 sVID~~t~kvv  350 (368)
T 1mda_H          340 DIYDAASDQDQ  350 (368)
T ss_dssp             EEEESSSCEEE
T ss_pred             EEEECCCCcEE
Confidence            99999999765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.73  E-value=6.2e-06  Score=68.21  Aligned_cols=207  Identities=8%  Similarity=0.002  Sum_probs=127.5

Q ss_pred             eeecc--ceEEEEECCCCCeEEEeec--CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec--cCCccccc
Q 015363           32 VQEVD--IISAIEFDKSGDHLATGDR--GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ--SHEPEFDY  105 (408)
Q Consensus        32 ~~h~~--~V~~~~~s~~~~~l~sg~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~h~~~~~~  105 (408)
                      +.|..  ....++|++++.++++.+.  ++.|.+.|..+++..                       ..+.  .+.     
T Consensus        15 ~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~-----------------------~~i~l~~~~-----   66 (266)
T 2iwa_A           15 FPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE-----------------------NIHKMDDSY-----   66 (266)
T ss_dssp             EECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE-----------------------EEEECCTTC-----
T ss_pred             EECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE-----------------------EEEecCCCc-----
Confidence            44543  3578999998765555443  579999999887631                       2211  111     


Q ss_pred             ccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                              ....+++  . ++.++++.-.++.+.++|..+.+.+..+... .+     .           ....+++|+.
T Consensus        67 --------fgeGi~~--~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~-----~-----------g~glt~Dg~~  118 (266)
T 2iwa_A           67 --------FGEGLTL--L-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK-----D-----------GWGLATDGKI  118 (266)
T ss_dssp             --------CEEEEEE--E-TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS-----S-----------CCEEEECSSS
T ss_pred             --------ceEEEEE--e-CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC-----C-----------eEEEEECCCE
Confidence                    1234555  3 2345555568899999999999887776543 11     1           2345567776


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeecc-cc---ccceEEEEeCCCCCEEEEe-cCCeEEEEe
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAH-AH---DYHINSISNNSDGETFISA-DDLRINLWN  260 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~v~~i~~~~~~~~l~~~-~d~~i~iwd  260 (408)
                      +            +.+..++.|.++| ....+      ..+.+.. ..   -..++.+.|. ++..++.. .++.|.+.|
T Consensus       119 l------------~vs~gs~~l~viD-~~t~~------v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID  178 (266)
T 2iwa_A          119 L------------YGSDGTSILYEID-PHTFK------LIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS  178 (266)
T ss_dssp             E------------EEECSSSEEEEEC-TTTCC------EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             E------------EEECCCCeEEEEE-CCCCc------EEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence            6            5445678888877 32211      1111111 11   1236677777 67666666 789999999


Q ss_pred             CCCCCceeeEeecCCC------cccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          261 LEISNQSFNIVDVKPA------NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       261 ~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                      .. ..+....+++...      .-.........|+|+|++.++++++...+.|...++...
T Consensus       179 ~~-tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          179 AK-DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TT-TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CC-CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            99 4555555543210      000112356899999998678888888899999888754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.68  E-value=3.1e-08  Score=87.65  Aligned_cols=186  Identities=7%  Similarity=0.038  Sum_probs=93.8

Q ss_pred             CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCC
Q 015363           46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN  125 (408)
Q Consensus        46 ~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~  125 (408)
                      ++..+++++.||.|..||..+++..                       -.+.. .             .+.+..+.  .+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~-----------------------W~~~~-~-------------~~~s~p~~--~~   48 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIK-----------------------WTLKE-D-------------PVLQVPTH--VE   48 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEE-----------------------EEEEC-C-------------CSCCCC------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEE-----------------------EEecC-C-------------CceecceE--cC
Confidence            5778999999999999999887642                       11221 1             12232332  23


Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (408)
                      +..+++++.|+.|+.||..+++.+.....+....       +.    .  ..... .+..            +++++.++
T Consensus        49 g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~-------~~----~--sp~~~-~~~~------------v~~g~~dg  102 (369)
T 2hz6_A           49 EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL-------VQ----A--SPCRS-SDGI------------LYMGKKQD  102 (369)
T ss_dssp             -CCEEECTTTCCEEEC-----CCSEECSCCHHHH-------HT----T--CSCC------------------CCCCEEEE
T ss_pred             CCEEEEeCCCCEEEEEECCCCceeeeeeccCccc-------cc----c--CceEe-cCCE------------EEEEeCCC
Confidence            5577777899999999998887655443321100       00    0  00011 1222            37788889


Q ss_pred             eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCC
Q 015363          206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV  284 (408)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  284 (408)
                      .+..|| ....      +.+..+ ..+.    ...++|++..++++ .|+.|+.||.++++.....-      ...    
T Consensus       103 ~v~a~D-~~tG------~~~w~~-~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~------~~~----  160 (369)
T 2hz6_A          103 IWYVID-LLTG------EKQQTL-SSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT------YFD----  160 (369)
T ss_dssp             EEEEEC-CC---------------------------------EEEEEEEEEEECCCSSSSSCCCEEE------EEE----
T ss_pred             EEEEEE-CCCC------cEEEEe-cCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe------ccc----
Confidence            999988 4332      222221 1111    23456677888887 89999999998665444321      111    


Q ss_pred             eEEEEEcCCC--CceEEEEeCCCeEEEEEcCCCcee
Q 015363          285 ITSAEFHPTH--CNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       285 v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      .....+.++.  ...+++++.||.|+.||.++++..
T Consensus       161 ~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          161 YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence            1122333321  034666888999999999998754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.67  E-value=4.7e-06  Score=74.21  Aligned_cols=258  Identities=6%  Similarity=0.004  Sum_probs=138.5

Q ss_pred             CCCCeEEEeecC-----CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEE
Q 015363           45 KSGDHLATGDRG-----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (408)
Q Consensus        45 ~~~~~l~sg~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~  119 (408)
                      ++++.+++....     +.|.++|..+.+.                       +..+..-.            .+  .+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v-----------------------v~~I~vG~------------~P--gia  124 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI-----------------------LGMTDGGF------------LP--HPV  124 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEE-----------------------EEEEEECS------------SC--EEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEE-----------------------EEEEECCC------------CC--ceE
Confidence            467766665542     6999999887753                       23333222            33  788


Q ss_pred             EeecCCCcEEEEEe----------CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          120 WCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       120 ~~p~~~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ++|  +|++++++.          .++.|.++|..+.+....+.......        ......+..+.++|||+.+   
T Consensus       125 ~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r--------~~~g~~P~~~~~spDGk~l---  191 (426)
T 3c75_H          125 AAE--DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR--------FLVGTYQWMNALTPDNKNL---  191 (426)
T ss_dssp             ECT--TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC--------CCBSCCGGGSEECTTSSEE---
T ss_pred             ECC--CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc--------cccCCCcceEEEcCCCCEE---
Confidence            965  477777765          47799999999998877665420000        0001122268999999987   


Q ss_pred             cccccCccccCCC--CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCC
Q 015363          190 FGCASNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISN  265 (408)
Q Consensus       190 ~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~  265 (408)
                               +.+.  .++.|.+.| ....+      ....+....     +....|++ +.+++. .||.+.+.+.. ..
T Consensus       192 ---------yV~n~~~~~~VsVID-~~t~k------vv~~I~v~g-----~~~~~p~g~~~~v~~~~dG~~~~V~~~-~~  249 (426)
T 3c75_H          192 ---------LFYQFSPAPAVGVVD-LEGKT------FDRMLDVPD-----CYHIFPASPTVFYMNCRDGSLARVDFA-DG  249 (426)
T ss_dssp             ---------EEEECSSSCEEEEEE-TTTTE------EEEEEECCS-----EEEEEEEETTEEEEEETTSSEEEEECC-TT
T ss_pred             ---------EEEecCCCCeEEEEE-CCCCe------EEEEEEcCC-----ceeeccCCCcEEEEEcCCCCEEEEECC-CC
Confidence                     5543  257788877 32221      111111110     01223333 333333 66677666763 33


Q ss_pred             ceeeEeecCCCcccCCcCCe-EEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          266 QSFNIVDVKPANMEDLTEVI-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      +......   ..+.....++ ..+.+.+++ ..++..+..+.|.+.|+.......  +..+.........  ........
T Consensus       250 ~v~~~~~---~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v--~~~~~~~~~~~i~--~g~~p~g~  321 (426)
T 3c75_H          250 ETKVTNT---EVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATF--RAPIEALTEAERA--DDWRPGGW  321 (426)
T ss_dssp             CCEEEEC---CCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEE--CCCEESSCTTTGG--GTEEECSS
T ss_pred             cEEEEee---eeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEE--eeeeeeccccccc--cccccCCc
Confidence            3221100   0011111111 235788998 566666778999999997654210  0111000000000  00000112


Q ss_pred             EEEEEccCCCEEEEeC-----------CCeEEEEECCCCCCceeeeeecc
Q 015363          345 SDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       345 ~~~~~spdg~~l~s~~-----------d~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                      ..++++||++.|+...           .+.|.+.|+.+ .+.++++....
T Consensus       322 ~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~  370 (426)
T 3c75_H          322 QQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGH  370 (426)
T ss_dssp             SCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEE
T ss_pred             eeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCC
Confidence            2368999988777652           24799999998 78888886543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.67  E-value=1.1e-05  Score=77.41  Aligned_cols=64  Identities=5%  Similarity=-0.029  Sum_probs=44.5

Q ss_pred             CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363          304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      +|.|+.||+.+++..    -.+..+             ..+....++..+.+|+.++ |+.|+.||.++ |+.+..++..
T Consensus       454 ~g~l~A~D~~tG~~~----W~~~~~-------------~~~~~g~~~tagglvf~gt~dg~l~a~D~~t-G~~lw~~~~~  515 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAA----WEVPYV-------------TIFNGGTLSTAGNLVFEGSADGRVIAYAADT-GEKLWEQPAA  515 (689)
T ss_dssp             EEEEEEEETTTTEEE----EEEEES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             ceeEEEEECCCCCeE----eEccCC-------------CCccCccceECCCEEEEECCCCcEEEEECCC-CccceeeeCC
Confidence            377999999998754    222222             1222234556777888885 79999999998 8998888765


Q ss_pred             ccc
Q 015363          383 EHL  385 (408)
Q Consensus       383 ~~~  385 (408)
                      .+.
T Consensus       516 ~~~  518 (689)
T 1yiq_A          516 SGV  518 (689)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.66  E-value=1.4e-05  Score=76.51  Aligned_cols=62  Identities=8%  Similarity=-0.014  Sum_probs=44.0

Q ss_pred             CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecc
Q 015363          305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                      +.|..||+.+++..    -.+...             ..+....++.++.+++.++ |+.+++||+++ ++.+..+....
T Consensus       457 g~l~A~D~~tG~~~----W~~~~~-------------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~  518 (677)
T 1kb0_A          457 GRLLAWDPVAQKAA----WSVEHV-------------SPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTGT  518 (677)
T ss_dssp             EEEEEEETTTTEEE----EEEEES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSS
T ss_pred             cEEEEEeCCCCcEE----eecCCC-------------CCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCCC
Confidence            78999999998754    222211             1233345666777888875 79999999998 89998887654


Q ss_pred             c
Q 015363          384 H  384 (408)
Q Consensus       384 ~  384 (408)
                      .
T Consensus       519 ~  519 (677)
T 1kb0_A          519 G  519 (677)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.63  E-value=1.6e-05  Score=65.04  Aligned_cols=189  Identities=13%  Similarity=0.168  Sum_probs=112.4

Q ss_pred             eEEEEECCCCCeEEEeecCC--eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           38 ISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      ...|.|+ ++.++.+.+.+|  .|+++|+++++..                       ....-.             ...
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~-----------------------~~~~l~-------------~~~   87 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL-----------------------QQIELG-------------KRY   87 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE-----------------------EEEECC-------------TTC
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE-----------------------EEEecC-------------Ccc
Confidence            4778898 677777777766  8999999887631                       111111             112


Q ss_pred             eE--EEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          116 NK--IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       116 ~~--v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      ..  ++.  .. +.++++.-.++.+.++|..+.+.+..+.....                  .....++++.+       
T Consensus        88 FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e------------------G~glt~dg~~L-------  139 (262)
T 3nol_A           88 FGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE------------------GWGLTHNDQYL-------  139 (262)
T ss_dssp             CEEEEEE--ET-TEEEEEESSSSEEEEEETTTCCEEEEEECSSC------------------CCCEEECSSCE-------
T ss_pred             ceeEEEE--eC-CEEEEEEeeCCEEEEEECccCcEEEEEECCCC------------------ceEEecCCCEE-------
Confidence            22  343  32 34455555789999999999998887766432                  12334566665       


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccc-cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                           +.....+.|.++| ....+..   ..+.....+.. ..++.+.|. +|.+++.. .+..|.+.|.+ .++....+
T Consensus       140 -----~~SdGs~~i~~iD-p~T~~v~---~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~-tG~V~~~I  208 (262)
T 3nol_A          140 -----IMSDGTPVLRFLD-PESLTPV---RTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE-TGKVTGII  208 (262)
T ss_dssp             -----EECCSSSEEEEEC-TTTCSEE---EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT-TCBEEEEE
T ss_pred             -----EEECCCCeEEEEc-CCCCeEE---EEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC-CCcEEEEE
Confidence                 4445567788877 3221111   10111001111 335567776 67766666 78899999998 56666666


Q ss_pred             ecCCCc-----ccCCcCCeEEEEEcCCCCceEEEEe
Q 015363          272 DVKPAN-----MEDLTEVITSAEFHPTHCNMLAYSS  302 (408)
Q Consensus       272 ~~~~~~-----~~~~~~~v~~~~~~p~~~~~l~s~~  302 (408)
                      ++....     ........+.|+|+|++.+++++|-
T Consensus       209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          209 DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            653211     0111245689999999856666664

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.60  E-value=1.9e-05  Score=69.94  Aligned_cols=219  Identities=8%  Similarity=0.035  Sum_probs=113.8

Q ss_pred             cEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCce
Q 015363          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS  206 (408)
Q Consensus       127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  206 (408)
                      ..+++++.++.|..+|..+++..................          ..... ++ .+            +.+..++.
T Consensus       144 ~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~----------~~~~~-~~-~v------------~~g~~~g~  199 (376)
T 3q7m_A          144 GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES----------APTTA-FG-AA------------VVGGDNGR  199 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC----------CCEEE-TT-EE------------EECCTTTE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC----------CcEEE-CC-EE------------EEEcCCCE
Confidence            478888899999999999998777665432110000000          00111 22 22            55666777


Q ss_pred             eeeceeeeccccccccccceeeccccc------cceEEEEeCC--CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCc
Q 015363          207 LRLPVVVTSQETNLVAGCRRIYAHAHD------YHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN  277 (408)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~i~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  277 (408)
                      +..+| ....+.      +........      ..+..+...|  .+..+..+ .++.+..+|.++++.....       
T Consensus       200 l~~~d-~~tG~~------~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~-------  265 (376)
T 3q7m_A          200 VSAVL-MEQGQM------IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR-------  265 (376)
T ss_dssp             EEEEE-TTTCCE------EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE-------
T ss_pred             EEEEE-CCCCcE------EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec-------
Confidence            77776 322111      111100000      0000011111  23455555 7899999999865544332       


Q ss_pred             ccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEE
Q 015363          278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL  357 (408)
Q Consensus       278 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~  357 (408)
                       .  ......+...  + ..+..++.++.|..+|..+++...    .......           ..+.....  .+..|+
T Consensus       266 -~--~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~~~w----~~~~~~~-----------~~~~~~~~--~~~~l~  322 (376)
T 3q7m_A          266 -E--LGSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGVTLW----TQSDLLH-----------RLLTSPVL--YNGNLV  322 (376)
T ss_dssp             -C--CCCEEEEEEE--T-TEEEEEETTCCEEEEETTTCCEEE----EECTTTT-----------SCCCCCEE--ETTEEE
T ss_pred             -c--CCCCCCceEE--C-CEEEEEcCCCeEEEEECCCCcEEE----eecccCC-----------CcccCCEE--ECCEEE
Confidence             1  1223344443  4 467777889999999999987542    1110000           11111222  234566


Q ss_pred             Ee-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeeceeeec
Q 015363          358 SR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTLY  407 (408)
Q Consensus       358 s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  407 (408)
                      .+ .++.|.++|..+ ++.+..+...............+.++..++...||
T Consensus       323 v~~~~g~l~~~d~~t-G~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~  372 (376)
T 3q7m_A          323 VGDSEGYLHWINVED-GRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVY  372 (376)
T ss_dssp             EECTTSEEEEEETTT-CCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEE
T ss_pred             EEeCCCeEEEEECCC-CcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEE
Confidence            66 469999999998 78877776533332222223456666666655554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.52  E-value=8.6e-05  Score=62.17  Aligned_cols=201  Identities=12%  Similarity=0.037  Sum_probs=115.2

Q ss_pred             cceEEEEECCCCCeEE-EeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           36 DIISAIEFDKSGDHLA-TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~-sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ..+..++|++++..|+ +-..++.|..++.++....                       .......            ..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-----------------------~~~~~~~------------~~   80 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-----------------------TIIRQDL------------GS   80 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-----------------------EEECTTC------------CC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-----------------------EEEECCC------------CC
Confidence            4578999999765554 4445679999998654310                       1111111            34


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      ...+++.|. ++.++++-...+.|.++++.............               ..+..+++.|++..+        
T Consensus        81 p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~---------------~~P~~i~vd~~~g~l--------  136 (267)
T 1npe_A           81 PEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL---------------VNPRGIVTDPVRGNL--------  136 (267)
T ss_dssp             EEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------------SSEEEEEEETTTTEE--------
T ss_pred             ccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCC---------------CCccEEEEeeCCCEE--------
Confidence            778898643 23444455567899999987544332222110               122367888866554        


Q ss_pred             CccccCCCC---CceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceee
Q 015363          195 NDSSFPPGG---VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       195 ~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~  269 (408)
                          +.+..   .+.|..++ +...       ....+..........++++|++..|..+  ..+.|.++|... .....
T Consensus       137 ----yv~~~~~~~~~I~~~~-~dg~-------~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~  203 (267)
T 1npe_A          137 ----YWTDWNRDNPKIETSH-MDGT-------NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRK  203 (267)
T ss_dssp             ----EEEECCSSSCEEEEEE-TTSC-------CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEE
T ss_pred             ----EEEECCCCCcEEEEEe-cCCC-------CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEE
Confidence                22221   35565554 2211       1111111222457889999987766665  678999999973 32222


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      +.       .. ......++.. .+ .++++....+.|..+|..+++..
T Consensus       204 ~~-------~~-~~~P~gi~~d-~~-~lyva~~~~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          204 VL-------EG-LQYPFAVTSY-GK-NLYYTDWKTNSVIAMDLAISKEM  242 (267)
T ss_dssp             EE-------EC-CCSEEEEEEE-TT-EEEEEETTTTEEEEEETTTTEEE
T ss_pred             Ee-------cC-CCCceEEEEe-CC-EEEEEECCCCeEEEEeCCCCCce
Confidence            21       11 2234566665 34 56666656789999999988654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.51  E-value=2.5e-05  Score=69.03  Aligned_cols=215  Identities=14%  Similarity=0.154  Sum_probs=113.1

Q ss_pred             CCcEEEE-EeCCCeEEEEEcCCC----cEEEEeccC-CCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363          125 NSALYLL-STNDKTIKLWKVQEK----KVKKVFDWN-VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (408)
Q Consensus       125 ~~~~l~~-~~~d~~i~vwd~~~~----~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (408)
                      ++++|++ +..+++|.++|+.+.    +...+.+.. ... .   .+     ...+..+...|+| .+.+..+.      
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~-~---~g-----~s~Ph~~~~~pdG-i~Vs~~g~------  157 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKK-V---SG-----YSRLHTVHCGPDA-IYISALGN------  157 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHH-H---HC-----EEEEEEEEECSSC-EEEEEEEE------
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccc-c---cC-----CCcccceeECCCe-EEEEcCCC------
Confidence            3555544 568899999999755    444444200 000 0   00     0011245666777 33111111      


Q ss_pred             cCCCCCceeeeceeeeccccccccccceeec-ccc-ccceEEEEeCCCCCEEEEec--------------------CCeE
Q 015363          199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAH-DYHINSISNNSDGETFISAD--------------------DLRI  256 (408)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~i~~~~~~~~l~~~~--------------------d~~i  256 (408)
                      ..+...+.|.++| ....+.      +..+. ... ...-..+.|+|+++.+++++                    ..+|
T Consensus       158 ~~g~~~g~v~vlD-~~T~~v------~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V  230 (462)
T 2ece_A          158 EEGEGPGGILMLD-HYSFEP------LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRI  230 (462)
T ss_dssp             TTSCSCCEEEEEC-TTTCCE------EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred             cCCCCCCeEEEEE-CCCCeE------EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEE
Confidence            1233446777766 322111      11111 111 11233577899999888873                    7899


Q ss_pred             EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEE--cCCCCceEEEEe------CCCeEEEEEcCCCceeccccccc--c
Q 015363          257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAYSS------SKGSIRLIDMRQSALCDTHSKLF--E  326 (408)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~--~  326 (408)
                      .+||+.+ .+....+++     .........+.|  +|++ +++.+++      .+++|.+|....+....  .+.+  .
T Consensus       231 ~v~D~~~-~k~~~tI~v-----g~~g~~P~~i~f~~~Pdg-~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~--~~vIdi~  301 (462)
T 2ece_A          231 HFWDLRK-RKRIHSLTL-----GEENRMALELRPLHDPTK-LMGFINMVVSLKDLSSSIWLWFYEDGKWNA--EKVIEIP  301 (462)
T ss_dssp             EEEETTT-TEEEEEEES-----CTTEEEEEEEEECSSTTC-CEEEEEEEEETTTCCEEEEEEEEETTEEEE--EEEEEEC
T ss_pred             EEEECCC-CcEeeEEec-----CCCCCccceeEeeECCCC-CEEEEEEeeeccCCCceEEEEEecCCceeE--EEEEeCC
Confidence            9999994 455555432     111223455655  9999 5555554      56788887766543211  1111  1


Q ss_pred             cccC----CCCccccccccceeEEEEEccCCCEEEEeC--CCeEEEEECCC
Q 015363          327 EQEA----PGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINM  371 (408)
Q Consensus       327 ~~~~----~~~~~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~  371 (408)
                      ....    +.....+.+-......+.+||||++|+++.  .+.|.+||+..
T Consensus       302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            0000    000000111113478899999999999873  48999999964

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.45  E-value=0.00013  Score=64.48  Aligned_cols=190  Identities=9%  Similarity=0.046  Sum_probs=98.8

Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (408)
                      +..+++++.++.|..+|..+++............     .          .... .++ .+            +.++.++
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~-----~----------~p~~-~~~-~v------------~v~~~~g  153 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL-----S----------RPVV-SDG-LV------------LIHTSNG  153 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC-----S----------CCEE-ETT-EE------------EEECTTS
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE-----c----------CCEE-ECC-EE------------EEEcCCC
Confidence            4578888999999999999998876655432110     0          0011 122 22            5556677


Q ss_pred             eeeeceeeeccccccccccceeeccccccce------EEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcc
Q 015363          206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHI------NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM  278 (408)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  278 (408)
                      .|..+| ....+.      +... ... ..+      ......  +..++.+ .++.|..+|..+++..... .......
T Consensus       154 ~l~~~d-~~tG~~------~W~~-~~~-~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~-~~~~~~~  221 (376)
T 3q7m_A          154 QLQALN-EADGAV------KWTV-NLD-MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQ-RISQATG  221 (376)
T ss_dssp             EEEEEE-TTTCCE------EEEE-ECC-C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEE-ECCC---
T ss_pred             eEEEEE-CCCCcE------EEEE-eCC-CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEE-ecccCCC
Confidence            777776 322111      1111 000 000      111111  3456666 7899999999855544432 1100000


Q ss_pred             cCCcCC---e-EEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363          279 EDLTEV---I-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       279 ~~~~~~---v-~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                      ......   + .....  .+ ..+..++.++.+..+|.++++...    ....              .....+..  ++.
T Consensus       222 ~~~~~~~~~~~~~p~~--~~-~~v~~~~~~g~l~~~d~~tG~~~w----~~~~--------------~~~~~~~~--~~~  278 (376)
T 3q7m_A          222 STEIDRLSDVDTTPVV--VN-GVVFALAYNGNLTALDLRSGQIMW----KREL--------------GSVNDFIV--DGN  278 (376)
T ss_dssp             --------CCCCCCEE--ET-TEEEEECTTSCEEEEETTTCCEEE----EECC--------------CCEEEEEE--ETT
T ss_pred             CcccccccccCCCcEE--EC-CEEEEEecCcEEEEEECCCCcEEe----eccC--------------CCCCCceE--ECC
Confidence            000000   0 01111  13 466777789999999999986541    1111              12233333  244


Q ss_pred             EEEEe-CCCeEEEEECCCCCCceeeee
Q 015363          355 HILSR-DYMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       355 ~l~s~-~d~~v~~wd~~~~~~~~~~~~  380 (408)
                      .|+.+ .++.|..+|..+ ++.+....
T Consensus       279 ~l~~~~~~g~l~~~d~~t-G~~~w~~~  304 (376)
T 3q7m_A          279 RIYLVDQNDRVMALTIDG-GVTLWTQS  304 (376)
T ss_dssp             EEEEEETTCCEEEEETTT-CCEEEEEC
T ss_pred             EEEEEcCCCeEEEEECCC-CcEEEeec
Confidence            55554 568999999987 67665554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.44  E-value=0.00019  Score=59.00  Aligned_cols=219  Identities=9%  Similarity=0.133  Sum_probs=118.7

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..+..++|.|+ ++.++++...++.|...|+. ++...........       ..-       .+++.+++.+.      
T Consensus        27 ~~lSGla~~~~-~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~-------D~E-------GIa~~~~g~~~------   84 (255)
T 3qqz_A           27 NNISSLTWSAQ-SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVK-------DLE-------TIEYIGDNQFV------   84 (255)
T ss_dssp             SCEEEEEEETT-TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCS-------SEE-------EEEECSTTEEE------
T ss_pred             cCcceeEEeCC-CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCC-------ChH-------HeEEeCCCEEE------
Confidence            45999999865 34566667889999999998 7766665442110       011       46667777654      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccce-ee-ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC--CCce
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRR-IY-AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQS  267 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~--~~~~  267 (408)
                            ++...++.+.+++ +............. .+ ....+..+..++++|.++.|.++ ......+|.++.  ....
T Consensus        85 ------vs~E~~~~l~~~~-v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~  157 (255)
T 3qqz_A           85 ------ISDERDYAIYVIS-LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE  157 (255)
T ss_dssp             ------EEETTTTEEEEEE-ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred             ------EEECCCCcEEEEE-cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence                  4434445566655 32211100000000 00 12334567899999998777666 433334444431  1112


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccc-cccCCCCccccccccceeEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE-EQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~i~~  346 (408)
                      +.+.......-..+...+..++++|....+++.......|..+|.... ...  ...+. +..      -+..-......
T Consensus       158 l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~--~~~L~~g~~------~l~~~~~qpEG  228 (255)
T 3qqz_A          158 LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIG--EMSLTKGSR------GLSHNIKQAEG  228 (255)
T ss_dssp             CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEE--EEECSTTGG------GCSSCCCSEEE
T ss_pred             eeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEE--EEEcCCccC------CcccccCCCCe
Confidence            222211000001122346889999987577777777889999997644 321  11121 110      00000124578


Q ss_pred             EEEccCCCEEEEeCCCeEEEEEC
Q 015363          347 IKFARNGRHILSRDYMTLKLWDI  369 (408)
Q Consensus       347 ~~~spdg~~l~s~~d~~v~~wd~  369 (408)
                      |+|.++|++.+++..+.++.|.-
T Consensus       229 ia~d~~G~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          229 VAMDASGNIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEECTTCCEEEEETTTEEEEEEC
T ss_pred             eEECCCCCEEEEcCCceEEEEEe
Confidence            99999999777765466655543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.42  E-value=3.7e-05  Score=62.86  Aligned_cols=188  Identities=9%  Similarity=0.107  Sum_probs=114.5

Q ss_pred             eEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeee-eccCCccccccccccccccee
Q 015363           38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE-FQSHEPEFDYLKSLEIEEKIN  116 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~h~~~~~~~~~~~~~~~v~  116 (408)
                      ...+.|+ ++.++.+.+.+|.|+++|+++++..                       .. +....             ---
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~-----------------------~~~l~~~~-------------Fge   99 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV-----------------------WMERLGNI-------------FAE   99 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS-----------------------EEEECTTC-------------CEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE-----------------------eEECCCCc-------------cee
Confidence            4678887 4667777788889999999988742                       11 11110             012


Q ss_pred             EEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCc
Q 015363          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND  196 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (408)
                      .+++  . ++.++++.-.++.+.++|..+.+.+..+.....                  .....++++.+          
T Consensus       100 Git~--~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e------------------GwGLt~Dg~~L----------  148 (268)
T 3nok_A          100 GLAS--D-GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE------------------GWGLCYWNGKL----------  148 (268)
T ss_dssp             EEEE--C-SSCEEEEESSSCEEEEEETTTTEEEEEEECSSC------------------CCCEEEETTEE----------
T ss_pred             EEEE--e-CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc------------------eeEEecCCCEE----------
Confidence            2444  3 235566666899999999999998887766321                  12333566665          


Q ss_pred             cccCCCCCceeeeceeeeccccccccccceeeccccc---cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD---YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                        +.+..++.|.++| ....+..   ..+..  ..+.   ..++.+.|. +|.+++.. .+..|.+.|.+ .++....++
T Consensus       149 --~vSdGs~~l~~iD-p~T~~v~---~~I~V--~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~-TG~V~~~Id  218 (268)
T 3nok_A          149 --VRSDGGTMLTFHE-PDGFALV---GAVQV--KLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA-TGTVVGVID  218 (268)
T ss_dssp             --EEECSSSEEEEEC-TTTCCEE---EEEEC--EETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT-TCBEEEEEE
T ss_pred             --EEECCCCEEEEEc-CCCCeEE---EEEEe--CCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC-CCcEEEEEE
Confidence              5555677888877 3322111   11111  1111   235667776 77766666 78899999998 566666665


Q ss_pred             cCCCc------ccCCcCCeEEEEEcCCCCceEEEEeC
Q 015363          273 VKPAN------MEDLTEVITSAEFHPTHCNMLAYSSS  303 (408)
Q Consensus       273 ~~~~~------~~~~~~~v~~~~~~p~~~~~l~s~~~  303 (408)
                      +....      ........+.|+++|++.+++++|-.
T Consensus       219 l~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          219 ASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             CHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             CCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            43100      11122456899999988677777643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.40  E-value=0.00025  Score=57.48  Aligned_cols=189  Identities=11%  Similarity=0.113  Sum_probs=112.0

Q ss_pred             ceEEEEECCCCCeEEEeecC--CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           37 IISAIEFDKSGDHLATGDRG--GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      -...+.|++ +.++.+.+..  ..|+.+|+.+++..                       ....-.             ..
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~-----------------------~~~~l~-------------~~   64 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRIL-----------------------QRAEVP-------------PP   64 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEE-----------------------EEEECC-------------TT
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEE-----------------------EEEeCC-------------CC
Confidence            366889986 5666666665  48999999888631                       111111             11


Q ss_pred             ee--EEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          115 IN--KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       115 v~--~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..  .+++  . ++.++...-.++.+.++|..+.+.+..+.....                  .....++++.+      
T Consensus        65 ~fgeGi~~--~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~------------------Gwglt~dg~~L------  117 (243)
T 3mbr_X           65 YFGAGIVA--W-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE------------------GWALTSDDSHL------  117 (243)
T ss_dssp             CCEEEEEE--E-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSC------------------CCEEEECSSCE------
T ss_pred             cceeEEEE--e-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC------------------ceEEeeCCCEE------
Confidence            22  2333  3 234555566899999999999998887766432                  12334566655      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccc---cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD---YHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                            +.+..++.|.++| ....+..   ..+..  ..+.   ..++.+.+. +|++++.. .+..|.+.|.+ .++..
T Consensus       118 ------~vSdgs~~l~~iD-p~t~~~~---~~I~V--~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~-tG~V~  183 (243)
T 3mbr_X          118 ------YMSDGTAVIRKLD-PDTLQQV---GSIKV--TAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPA-SGKVV  183 (243)
T ss_dssp             ------EEECSSSEEEEEC-TTTCCEE---EEEEC--EETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTT-TCBEE
T ss_pred             ------EEECCCCeEEEEe-CCCCeEE---EEEEE--ccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECC-CCCEE
Confidence                  4445577888877 3222111   10110  1111   234556655 67666666 78899999999 56666


Q ss_pred             eEeecCCCc--c----cCCcCCeEEEEEcCCCCceEEEEeC
Q 015363          269 NIVDVKPAN--M----EDLTEVITSAEFHPTHCNMLAYSSS  303 (408)
Q Consensus       269 ~~~~~~~~~--~----~~~~~~v~~~~~~p~~~~~l~s~~~  303 (408)
                      ..+++....  .    .......+.|+++|++.+++++|-.
T Consensus       184 ~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          184 AWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            666643210  0    1122456899999988567777643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.39  E-value=9.3e-05  Score=61.21  Aligned_cols=209  Identities=9%  Similarity=-0.005  Sum_probs=119.3

Q ss_pred             eeEEEEeecCCCcEEEEEeC--CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          115 INKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ...+.|+|+  +.++++.+.  ++.|++.|+.+++...........        .        ...+..++..+      
T Consensus        23 ~~Gl~~~~d--g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~--------f--------geGi~~~g~~l------   78 (266)
T 2iwa_A           23 TQGLVYAEN--DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY--------F--------GEGLTLLNEKL------   78 (266)
T ss_dssp             EEEEEECST--TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC--------C--------EEEEEEETTEE------
T ss_pred             cccEEEeCC--CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc--------c--------eEEEEEeCCEE------
Confidence            578999643  655555543  689999999999988776543221        0        11222234443      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                           .++.-.++.+.++| ...      .+....+..+ ...  ...+++|+..++++ .++.|.++|..+.+ ....+
T Consensus        79 -----yv~t~~~~~v~viD-~~t------~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~-v~~~I  142 (266)
T 2iwa_A           79 -----YQVVWLKNIGFIYD-RRT------LSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFK-LIKKH  142 (266)
T ss_dssp             -----EEEETTCSEEEEEE-TTT------TEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCC-EEEEE
T ss_pred             -----EEEEecCCEEEEEE-CCC------CcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCc-EEEEE
Confidence                 24455678888888 322      1222222111 011  12355678777777 78899999998543 43333


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC-CCCccccccccceeEEEEEc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA-PGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~i~~~~~s  350 (408)
                      .+..  -...-..+..+.|. ++ .+++....++.|.+.|..+++..    ..+..... +.....-..-....+.++|+
T Consensus       143 ~Vg~--~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~----~~I~~~g~~~~~~~~~~~~~~v~nGIa~~  214 (266)
T 2iwa_A          143 NVKY--NGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLL----GWILLPNLRKKLIDEGFRDIDVLNGIAWD  214 (266)
T ss_dssp             ECEE--TTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEE----EEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred             EECC--CCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEE----EEEECCCcccccccccccccCceEEEEEc
Confidence            2210  00011236678888 77 77777667899999999999765    22221100 00000000001356899999


Q ss_pred             cCCCEEE-EeCC-CeEEEEECCC
Q 015363          351 RNGRHIL-SRDY-MTLKLWDINM  371 (408)
Q Consensus       351 pdg~~l~-s~~d-~~v~~wd~~~  371 (408)
                      |+++.|+ ++.. +.|...++..
T Consensus       215 ~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          215 QENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCCCEEEEECCCCCeEEEEEEec
Confidence            9987555 5544 8998888875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.37  E-value=0.00017  Score=62.18  Aligned_cols=266  Identities=9%  Similarity=0.014  Sum_probs=133.3

Q ss_pred             ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccc-----c---ccc
Q 015363           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD-----Y---LKS  108 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~-----~---~~~  108 (408)
                      ...+++|+++|+++.++..++.|..|+..++...                        .+........     -   ...
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~g~~~~~~   75 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV------------------------DFAYASPYWNKAFCENSTDAEK   75 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE------------------------EEEESCTTCCHHHHTTCCCGGG
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE------------------------EEecccccccccccccccchhc
Confidence            3467889999998888888999999987654321                        1110000000     0   000


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc-CCCeee
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGE  187 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~  187 (408)
                      ......+..+++.+. ++ .|.++...+.|..+|..+++...........           ....+..++..+ +|....
T Consensus        76 ~~~~~~p~gi~~~~~-~g-~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~-----------~~~~p~~i~~d~~~G~l~v  142 (322)
T 2fp8_A           76 RPLCGRTYDISYNLQ-NN-QLYIVDCYYHLSVVGSEGGHATQLATSVDGV-----------PFKWLYAVTVDQRTGIVYF  142 (322)
T ss_dssp             HHHHCCEEEEEEETT-TT-EEEEEETTTEEEEECTTCEECEEEESEETTE-----------ECSCEEEEEECTTTCCEEE
T ss_pred             cccCCCCceEEEcCC-CC-cEEEEECCCCEEEEeCCCCEEEEecccCCCC-----------cccccceEEEecCCCEEEE
Confidence            001134788888531 35 4555555556888887765433322110000           001122466777 665431


Q ss_pred             cccc--cccCc---cccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEe
Q 015363          188 RNFG--CASND---SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN  260 (408)
Q Consensus       188 ~~~~--~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd  260 (408)
                      .-.+  +....   .++.+...+.|..++ .....       ...+ .......+.++++|+++.|..+  ..+.|..|+
T Consensus       143 ~d~~~~~~~~~~~~~~~~~~~~g~v~~~d-~~~~~-------~~~~-~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~  213 (322)
T 2fp8_A          143 TDVSTLYDDRGVQQIMDTSDKTGRLIKYD-PSTKE-------TTLL-LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYW  213 (322)
T ss_dssp             EESCSSCCTTCHHHHHHHTCCCEEEEEEE-TTTTE-------EEEE-EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             ECCcccccccccceehcccCCCceEEEEe-CCCCE-------EEEe-ccCCccCcceEECCCCCEEEEEeCCCCeEEEEE
Confidence            1000  00000   001122345566655 21111       0110 0111335678999999866655  578999999


Q ss_pred             CCCCCc-eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC----------CCeEEEEEcCCCceeccccccccccc
Q 015363          261 LEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----------KGSIRLIDMRQSALCDTHSKLFEEQE  329 (408)
Q Consensus       261 ~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~  329 (408)
                      +..... ....+.    .+   .+ ...++++++| +++++...          .+.|..+|.. ++..    ..+....
T Consensus       214 ~~~~~~~~~~~~~----~~---~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~----~~~~~~~  279 (322)
T 2fp8_A          214 LEGPKKGTAEVLV----KI---PN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNIL----EVIPLPP  279 (322)
T ss_dssp             SSSTTTTCEEEEE----EC---SS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEE----EEEECCT
T ss_pred             CCCCcCCccceEE----eC---CC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCC-CCEE----EEEECCC
Confidence            873211 111111    01   22 6789999999 76666544          4678888864 4332    2222221


Q ss_pred             CCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363          330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       330 ~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~  371 (408)
                      ..        ....+..+++ .++++.++.. .+.|..+++..
T Consensus       280 g~--------~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          280 PF--------AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TT--------TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             CC--------ccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            00        0123555666 4666555553 58999999864

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.35  E-value=4.9e-05  Score=65.70  Aligned_cols=186  Identities=10%  Similarity=0.017  Sum_probs=106.3

Q ss_pred             cEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCce
Q 015363          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS  206 (408)
Q Consensus       127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  206 (408)
                      ..+.+++.++.|..+|.. ++...........        +.       .+...+++..             +.++.++.
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~--------~~-------~~~~~~~g~l-------------~vgt~~~~  158 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GTEKWRFKTKKAI--------YA-------TPIVSEDGTI-------------YVGSNDNY  158 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SCEEEEEECSSCC--------CS-------CCEECTTSCE-------------EEECTTSE
T ss_pred             CEEEEEecCCEEEEEcCC-CCEEEEEcCCCce--------ee-------eeEEcCCCEE-------------EEEcCCCE
Confidence            367788889999999988 6655444332110        11       2344445553             44566677


Q ss_pred             eeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE
Q 015363          207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT  286 (408)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  286 (408)
                      |..++ ..       +.....+ ......+.++...+++.+++..  +.|..+| .++......        ......+.
T Consensus       159 l~~~d-~~-------g~~~~~~-~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~--------~~~~~~~~  218 (330)
T 3hxj_A          159 LYAIN-PD-------GTEKWRF-KTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNF--------YAGYWTVT  218 (330)
T ss_dssp             EEEEC-TT-------SCEEEEE-ECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEE--------CCSSCCCS
T ss_pred             EEEEC-CC-------CCEeEEE-ecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEE--------ccCCccee
Confidence            77776 22       1111111 2223445667777788766665  8899999 534433332        22234567


Q ss_pred             EEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEE
Q 015363          287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL  366 (408)
Q Consensus       287 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~  366 (408)
                      ++...+++ . +..++.++.|..+|. ++...    ..+....            ..+..+.+.+++.+.++..++.|..
T Consensus       219 ~~~~~~~g-~-l~v~t~~~gl~~~~~-~g~~~----~~~~~~~------------~~~~~~~~~~~g~l~v~t~~ggl~~  279 (330)
T 3hxj_A          219 RPAISEDG-T-IYVTSLDGHLYAINP-DGTEK----WRFKTGK------------RIESSPVIGNTDTIYFGSYDGHLYA  279 (330)
T ss_dssp             CCEECTTS-C-EEEEETTTEEEEECT-TSCEE----EEEECSS------------CCCSCCEECTTSCEEEECTTCEEEE
T ss_pred             ceEECCCC-e-EEEEcCCCeEEEECC-CCCEe----EEeeCCC------------CccccceEcCCCeEEEecCCCCEEE
Confidence            78888887 4 455667788888874 34332    2222111            1223345566776665556788999


Q ss_pred             EECCCCCCceeeeeec
Q 015363          367 WDINMDSGPVATFQVH  382 (408)
Q Consensus       367 wd~~~~~~~~~~~~~~  382 (408)
                      +|. + ++.+..+...
T Consensus       280 ~d~-~-g~~~~~~~~~  293 (330)
T 3hxj_A          280 INP-D-GTEKWNFETG  293 (330)
T ss_dssp             ECT-T-SCEEEEEECS
T ss_pred             ECC-C-CcEEEEEEcC
Confidence            996 3 5666665543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.32  E-value=0.0015  Score=57.90  Aligned_cols=207  Identities=9%  Similarity=-0.013  Sum_probs=116.5

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..+..++|.+. ++.++.+-...+.|..+++..+....+......               .+..+++.+.+..|      
T Consensus       116 ~~~~gl~~d~~-~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~---------------~p~glavd~~~g~l------  173 (386)
T 3v65_B          116 ENAIALDFHHR-RELVFWSDVTLDRILRANLNGSNVEEVVSTGLE---------------SPGGLAVDWVHDKL------  173 (386)
T ss_dssp             SCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCCEEEEECSSCS---------------CCCCEEEETTTTEE------
T ss_pred             CccEEEEEecC-CCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC---------------CccEEEEEeCCCeE------
Confidence            34788999643 344444545778999999987765444332111               11146666655444      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC-CeEEEEeCCCCCceee
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD-LRINLWNLEISNQSFN  269 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~  269 (408)
                           +++-...+.|.+.+ +..       .....+........+.++++|.+..|..+  .. +.|..++.+ +.....
T Consensus       174 -----Y~~d~~~~~I~~~~-~dg-------~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~  239 (386)
T 3v65_B          174 -----YWTDSGTSRIEVAN-LDG-------AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRI  239 (386)
T ss_dssp             -----EEEETTTTEEEECB-TTS-------CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEE
T ss_pred             -----EEEcCCCCeEEEEe-CCC-------CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcEE
Confidence                 23334455666555 221       11111122233557899999977766655  44 788888887 332222


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      +       ....-.....|+++|++..++++-+..+.|..+|+.....     ..+....           ......+++
T Consensus       240 ~-------~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-----~~~~~~~-----------~~~P~giav  296 (386)
T 3v65_B          240 I-------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-----KAVISQG-----------LPHPFAITV  296 (386)
T ss_dssp             E-------ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-----EEEECSS-----------CSSEEEEEE
T ss_pred             E-------EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-----EEEEECC-----------CCCceEEEE
Confidence            2       1222345689999987635555556678899999875422     1111110           124567777


Q ss_pred             ccCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363          350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                      . .+.++++-. .+.|..++..+ ++.++.+.
T Consensus       297 ~-~~~ly~td~~~~~V~~~~~~~-G~~~~~i~  326 (386)
T 3v65_B          297 F-EDSLYWTDWHTKSINSANKFT-GKNQEIIR  326 (386)
T ss_dssp             E-TTEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred             E-CCEEEEeeCCCCeEEEEECCC-CcceEEEc
Confidence            3 444444543 48898888554 55555554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.32  E-value=9.1e-05  Score=60.58  Aligned_cols=198  Identities=8%  Similarity=0.026  Sum_probs=111.6

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      .-...+.|+   ++.++.+++.+|  .|+++|+.+++...........         +       .....+++..+    
T Consensus        43 ~ftqGL~~~---~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~---------F-------geGit~~g~~l----   99 (262)
T 3nol_A           43 AFTEGFFYR---NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY---------F-------GEGISDWKDKI----   99 (262)
T ss_dssp             CEEEEEEEE---TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC---------C-------EEEEEEETTEE----
T ss_pred             cccceEEEE---CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc---------c-------eeEEEEeCCEE----
Confidence            335788885   366777777776  9999999999988776653221         1       12223334444    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                             ....-.++.+.+|| ...      .+.+..+....    ....+++++..|+.+ .++.|.++|..+.+ ...
T Consensus       100 -------y~ltw~~~~v~v~D-~~t------~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~-v~~  160 (262)
T 3nol_A          100 -------VGLTWKNGLGFVWN-IRN------LRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLT-PVR  160 (262)
T ss_dssp             -------EEEESSSSEEEEEE-TTT------CCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCS-EEE
T ss_pred             -------EEEEeeCCEEEEEE-Ccc------CcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCe-EEE
Confidence                   23345677888888 322      12222221111    112333567777777 67889999998544 444


Q ss_pred             EeecCCCcccCCc-CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          270 IVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       270 ~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      .+.+.   ..+.. ..+..+.|. +| .+++..-.+..|.+.|.++++..    ..+...........-..-....+.|+
T Consensus       161 ~I~V~---~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~----~~Id~~~L~~~~~~~~~~~~vlNGIA  231 (262)
T 3nol_A          161 TITVT---AHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVT----GIIDLNGILAEAGPLPSPIDVLNGIA  231 (262)
T ss_dssp             EEECE---ETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEE----EEEECTTGGGGSCSCCSSCCCEEEEE
T ss_pred             EEEec---cCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEE----EEEECCcCccccccccCcCCceEEEE
Confidence            33321   11111 334567776 67 77776667889999999999765    22221100000000000013568999


Q ss_pred             EccCCCEE-EEeCC
Q 015363          349 FARNGRHI-LSRDY  361 (408)
Q Consensus       349 ~spdg~~l-~s~~d  361 (408)
                      |+|+++.| ++|-.
T Consensus       232 ~dp~~~~lfVTGK~  245 (262)
T 3nol_A          232 WDKEHHRLFVTGKL  245 (262)
T ss_dssp             EETTTTEEEEEETT
T ss_pred             EcCCCCEEEEECCC
Confidence            99976655 55643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.31  E-value=0.00031  Score=60.13  Aligned_cols=232  Identities=11%  Similarity=0.076  Sum_probs=123.0

Q ss_pred             cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      .....++|+++|+++++-..++.|..|+.++...                        ..+.. .            ..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~------------------------~~~~~-~------------~~p   74 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ------------------------IHATV-E------------GKV   74 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE------------------------EEEEC-S------------SEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE------------------------EEEeC-C------------CCc
Confidence            4567899999999777766788998888654311                        11111 1            347


Q ss_pred             eEEEEeecCCCcEEEEEeC-CC-eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          116 NKIRWCQSANSALYLLSTN-DK-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~~-d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      ..+++.  ++|.++++... ++ .|..++..+++...........       ...       .++..+++..+       
T Consensus        75 ~gia~~--~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~-------~~~-------g~~~~~~~~~~-------  131 (306)
T 2p4o_A           75 SGLAFT--SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAI-------FLN-------GITPLSDTQYL-------  131 (306)
T ss_dssp             EEEEEC--TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCS-------CEE-------EEEESSSSEEE-------
T ss_pred             eeEEEc--CCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcc-------ccC-------cccccCCCcEE-------
Confidence            888985  55776555433 22 4666777777765443321100       000       12222222221       


Q ss_pred             cCccccCCCCCceeeeceeeecccccc---ccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCce-
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNL---VAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS-  267 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~-  267 (408)
                           ++....+.|..+| ........   ............-...+.+  +|+++.|..+  ..++|..|++...+.. 
T Consensus       132 -----v~d~~~g~i~~~d-~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~  203 (306)
T 2p4o_A          132 -----TADSYRGAIWLID-VVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG  203 (306)
T ss_dssp             -----EEETTTTEEEEEE-TTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC
T ss_pred             -----EEECCCCeEEEEe-CCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC
Confidence                 3333455555555 21100000   0000000001111234555  7888777665  6889999998742221 


Q ss_pred             -eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363          268 -FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       268 -~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                       ...+       .. ......++++++| +++++....+.|.++|.. ++...  +..+...            .....+
T Consensus       204 ~~~~~-------~~-~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~-G~~~~--~~~~~~~------------~~~p~~  259 (306)
T 2p4o_A          204 EPEIF-------VE-QTNIDDFAFDVEG-NLYGATHIYNSVVRIAPD-RSTTI--IAQAEQG------------VIGSTA  259 (306)
T ss_dssp             CCEEE-------EE-SCCCSSEEEBTTC-CEEEECBTTCCEEEECTT-CCEEE--EECGGGT------------CTTEEE
T ss_pred             ccEEE-------ec-cCCCCCeEECCCC-CEEEEeCCCCeEEEECCC-CCEEE--Eeecccc------------cCCceE
Confidence             1111       00 1234568999999 877777778899999975 43310  0111111            135789


Q ss_pred             EEEc---cCCCEEEEe
Q 015363          347 IKFA---RNGRHILSR  359 (408)
Q Consensus       347 ~~~s---pdg~~l~s~  359 (408)
                      ++|.   ||+..|+.+
T Consensus       260 ~a~~g~~~d~~~LyVt  275 (306)
T 2p4o_A          260 VAFGQTEGDCTAIYVV  275 (306)
T ss_dssp             EEECCSTTTTTEEEEE
T ss_pred             EEEecccCCCCEEEEE
Confidence            9998   887776654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.27  E-value=0.00012  Score=63.21  Aligned_cols=186  Identities=12%  Similarity=0.041  Sum_probs=104.0

Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      +.++..  ++++ .+..++.++.|..+|.. ++...........        +.       .+...+++..         
T Consensus       139 ~~~~~~--~~~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~--------~~-------~~~~d~~g~l---------  190 (330)
T 3hxj_A          139 YATPIV--SEDG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAI--------TS-------AASIGKDGTI---------  190 (330)
T ss_dssp             CSCCEE--CTTS-CEEEECTTSEEEEECTT-SCEEEEEECSSCC--------CS-------CCEECTTCCE---------
T ss_pred             eeeeEE--cCCC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCc--------ee-------eeEEcCCCEE---------
Confidence            444444  3345 46677888999999998 7665544432111        11       2334444543         


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecC
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK  274 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~  274 (408)
                          +.++  +.+..++ ..       +...... ......+.++...+++.+++...++.|..+|.. +..... +.  
T Consensus       191 ----~v~t--~~l~~~d-~~-------g~~~~~~-~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~-g~~~~~-~~--  251 (330)
T 3hxj_A          191 ----YFGS--DKVYAIN-PD-------GTEKWNF-YAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD-GTEKWR-FK--  251 (330)
T ss_dssp             ----EEES--SSEEEEC-TT-------SCEEEEE-CCSSCCCSCCEECTTSCEEEEETTTEEEEECTT-SCEEEE-EE--
T ss_pred             ----EEEe--CEEEEEC-CC-------CcEEEEE-ccCCcceeceEECCCCeEEEEcCCCeEEEECCC-CCEeEE-ee--
Confidence                2222  4455544 11       1111111 222345677788888877776677888888754 333322 21  


Q ss_pred             CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363          275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       275 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                           .....+..+.+.+++  .|..++.++.|..+|. +++..    ..+...            ...+.++...++|+
T Consensus       252 -----~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~g~~~----~~~~~~------------~~~~~~~~~d~~g~  307 (330)
T 3hxj_A          252 -----TGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-DGTEK----WNFETG------------SWIIATPVIDENGT  307 (330)
T ss_dssp             -----CSSCCCSCCEECTTS--CEEEECTTCEEEEECT-TSCEE----EEEECS------------SCCCSCCEECTTCC
T ss_pred             -----CCCCccccceEcCCC--eEEEecCCCCEEEECC-CCcEE----EEEEcC------------CccccceEEcCCCE
Confidence                 112223345566666  4666778889999996 55433    222211            13456677778888


Q ss_pred             EEEEeCCCeEEEEECCC
Q 015363          355 HILSRDYMTLKLWDINM  371 (408)
Q Consensus       355 ~l~s~~d~~v~~wd~~~  371 (408)
                      +.+.+.+|.+++.....
T Consensus       308 l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          308 IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             EEEECTTSCEEEEEC--
T ss_pred             EEEEcCCCeEEEEeccc
Confidence            87777789999988764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.25  E-value=0.0019  Score=56.30  Aligned_cols=207  Identities=9%  Similarity=-0.014  Sum_probs=115.2

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..+..++|.+. ++.++.+-...+.|..+++..+....+......               .+..+++.+.+..+      
T Consensus        73 ~~~~~l~~d~~-~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~---------------~p~glavd~~~g~l------  130 (349)
T 3v64_C           73 ENAIALDFHHR-RELVFWSDVTLDRILRANLNGSNVEEVVSTGLE---------------SPGGLAVDWVHDKL------  130 (349)
T ss_dssp             SCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCS---------------CCCEEEEETTTTEE------
T ss_pred             CceEEEEEecc-ccEEEEEeccCCceEEEecCCCCceEEEeCCCC---------------CccEEEEecCCCeE------
Confidence            34788999643 333444445778899999887654443322111               11146666655444      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC-CeEEEEeCCCCCceee
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD-LRINLWNLEISNQSFN  269 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~  269 (408)
                           +++-...+.|.+.+ +...       ....+........+.++++|.+..|..+  .. +.|..++++ +.....
T Consensus       131 -----y~~d~~~~~I~~~~-~dG~-------~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~  196 (349)
T 3v64_C          131 -----YWTDSGTSRIEVAN-LDGA-------HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRI  196 (349)
T ss_dssp             -----EEEETTTTEEEEEE-TTSC-------SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEE
T ss_pred             -----EEEcCCCCeEEEEc-CCCC-------ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC-CCCcEE
Confidence                 24444456666655 2211       1112122233457899999976666555  44 788888887 322222


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      +       ....-.....++++|++..++++-...+.|..+|+.....     ..+....           ......+++
T Consensus       197 ~-------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-----~~~~~~~-----------~~~P~giav  253 (349)
T 3v64_C          197 I-------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-----KAVISQG-----------LPHPFAITV  253 (349)
T ss_dssp             S-------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSS-----------CSSEEEEEE
T ss_pred             E-------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-----EEEEeCC-----------CCCceEEEE
Confidence            1       1222345689999987735555555678999999875432     1111110           123566777


Q ss_pred             ccCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363          350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                      . .+.+.++-. .+.|..++..+ ++.+..+.
T Consensus       254 ~-~~~ly~td~~~~~V~~~~~~~-G~~~~~i~  283 (349)
T 3v64_C          254 F-EDSLYWTDWHTKSINSANKFT-GKNQEIIR  283 (349)
T ss_dssp             E-TTEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred             E-CCEEEEecCCCCeEEEEEccC-CCccEEec
Confidence            3 444444443 48888888554 45555443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.25  E-value=0.0045  Score=60.58  Aligned_cols=271  Identities=11%  Similarity=0.087  Sum_probs=148.0

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ...|.++...++|. |-.|+.++-|..|+..++...                        .+......-.  ..+ ....
T Consensus       356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~------------------------~~~~~~~~~~--~~l-~~~~  407 (795)
T 4a2l_A          356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT------------------------SYTLQEDESA--RGI-GSNN  407 (795)
T ss_dssp             CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE------------------------EECCC--------CC-SCSC
T ss_pred             CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE------------------------EEecCCCCcc--cCC-CCcc
Confidence            45699999998887 555777777888887654321                        1110000000  000 0044


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      |.++..  +.+|.+|..|+.++-|..+|..+++........  +.  .+...+.       ++...++|...        
T Consensus       408 v~~i~~--d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~--~~--l~~~~v~-------~i~~d~~g~lw--------  466 (795)
T 4a2l_A          408 IKAVYV--DEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN--SQ--LVNENVY-------AILPDGEGNLW--------  466 (795)
T ss_dssp             EEEEEE--ETTTTEEEEEETTTEEEEEETTTCCEEEECTTT--SC--CSCSCEE-------EEEECSSSCEE--------
T ss_pred             EEEEEE--cCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC--CC--cCCCeeE-------EEEECCCCCEE--------
Confidence            888877  455764777888778999999888765543211  00  1122343       45556666643        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecC
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK  274 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~  274 (408)
                           .++. +-+..|+ ............ .....-....|.++...++|.+.+... +.|..||..+ ... .. ...
T Consensus       467 -----igt~-~Gl~~~~-~~~~~~~~~~~~-~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~-~~~-~~-~~~  534 (795)
T 4a2l_A          467 -----LGTL-SALVRFN-PEQRSFTTIEKE-KDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEG-LDI-QK-ASI  534 (795)
T ss_dssp             -----EEES-SCEEEEE-TTTTEEEECCBC-TTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEET-TEE-EE-CCC
T ss_pred             -----EEec-CceeEEe-CCCCeEEEcccc-ccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCC-CeE-EE-ecC
Confidence                 2333 3355555 211100000000 000011235689999999998777666 5688888873 332 21 100


Q ss_pred             CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363          275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       275 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                      ..........|.++...++| .+.++ +.. -|..||..+++..     .+.....      +.  ...|.++...++|.
T Consensus       535 ~~~~~l~~~~i~~i~~d~~g-~lWig-T~~-Gl~~~d~~~~~~~-----~~~~~~g------l~--~~~i~~i~~d~~g~  598 (795)
T 4a2l_A          535 LPVSNVTKLFTNCIYEASNG-IIWVG-TRE-GFYCFNEKDKQIK-----RYNTTNG------LP--NNVVYGILEDSFGR  598 (795)
T ss_dssp             SCSCGGGGSCEEEEEECTTS-CEEEE-ESS-CEEEEETTTTEEE-----EECGGGT------CS--CSCEEEEEECTTSC
T ss_pred             CCCCCCCCCeeEEEEECCCC-CEEEE-eCC-CceeECCCCCcEE-----EeCCCCC------Cc--hhheEEEEECCCCC
Confidence            00011234578999999998 65544 444 5788898766431     1111100      00  24588899999998


Q ss_pred             EEEEeCCCeEEEEECCCCCCceeeeeecccc
Q 015363          355 HILSRDYMTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       355 ~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                      +.+++. +.|..||..+  ..++.+....+.
T Consensus       599 lWi~t~-~Gl~~~~~~~--~~~~~~~~~dGl  626 (795)
T 4a2l_A          599 LWLSTN-RGISCFNPET--EKFRNFTESDGL  626 (795)
T ss_dssp             EEEEET-TEEEEEETTT--TEEEEECGGGTC
T ss_pred             EEEEcC-CceEEEcCCC--CcEEEcCCcCCC
Confidence            777775 4677888864  445566555544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.25  E-value=0.00018  Score=68.80  Aligned_cols=55  Identities=7%  Similarity=0.168  Sum_probs=38.3

Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      +.|..||+.+++...+. +        +...+....+...+ .+++.++.|+.+++||.++++.+
T Consensus       457 g~l~A~D~~tG~~~W~~-~--------~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSV-E--------HVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             EEEEEEETTTTEEEEEE-E--------ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             cEEEEEeCCCCcEEeec-C--------CCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCcee
Confidence            67999999865544432 1        12223334455666 67888899999999999999765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.22  E-value=5.9e-05  Score=69.16  Aligned_cols=86  Identities=12%  Similarity=0.094  Sum_probs=56.7

Q ss_pred             CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee-----c---ccccccccccCCCCccccccccceeEEEEEccCCCE
Q 015363          284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC-----D---THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH  355 (408)
Q Consensus       284 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~  355 (408)
                      ...++.++|||..+++++..+.+|.++|+.+.+..     .   ......+.             ......++|+|+| +
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-------------G~gP~h~aF~~dG-~  343 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-------------GLGPLHTAFDGRG-N  343 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-------------CSCEEEEEECTTS-E
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-------------CCCcceEEECCCC-e
Confidence            34679999999445555556899999999865210     0   00011111             1457899999999 6


Q ss_pred             EEEe-C-CCeEEEEECCCC---------CCceeeeeecc
Q 015363          356 ILSR-D-YMTLKLWDINMD---------SGPVATFQVHE  383 (408)
Q Consensus       356 l~s~-~-d~~v~~wd~~~~---------~~~~~~~~~~~  383 (408)
                      +++. . |+.|..||+++.         .+.+.++..|.
T Consensus       344 aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y  382 (595)
T 1fwx_A          344 AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY  382 (595)
T ss_dssp             EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS
T ss_pred             EEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc
Confidence            6665 3 699999999751         35666666653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.17  E-value=0.00075  Score=54.66  Aligned_cols=198  Identities=10%  Similarity=0.035  Sum_probs=110.9

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      .-...+.|.+   +.++.+.+.+|  .|+.+|+.+++...........         +       .......+..+    
T Consensus        21 ~ftqGL~~~~---~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~---------f-------geGi~~~~~~l----   77 (243)
T 3mbr_X           21 AFTEGLFYLR---GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY---------F-------GAGIVAWRDRL----   77 (243)
T ss_dssp             CCEEEEEEET---TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC---------C-------EEEEEEETTEE----
T ss_pred             cccccEEEEC---CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc---------c-------eeEEEEeCCEE----
Confidence            5577899952   55666767654  9999999999988877654321         1       11222233333    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                             ....-.++.+.+|| ...      .+.+..+...  ..-..+  .+++..|+.+ .++.|.++|..+.. ...
T Consensus        78 -------y~ltw~~~~v~v~D-~~t------l~~~~ti~~~--~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~-~~~  138 (243)
T 3mbr_X           78 -------IQLTWRNHEGFVYD-LAT------LTPRARFRYP--GEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQ-QVG  138 (243)
T ss_dssp             -------EEEESSSSEEEEEE-TTT------TEEEEEEECS--SCCCEE--EECSSCEEEECSSSEEEEECTTTCC-EEE
T ss_pred             -------EEEEeeCCEEEEEE-CCc------CcEEEEEeCC--CCceEE--eeCCCEEEEECCCCeEEEEeCCCCe-EEE
Confidence                   23345678888888 322      2222222111  111233  3567777777 78899999998543 444


Q ss_pred             EeecCCCcccCC-cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC-CCCccccccccceeEEE
Q 015363          270 IVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA-PGTRSFFTEIIASISDI  347 (408)
Q Consensus       270 ~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~i~~~  347 (408)
                      .+.+..   .+. -..++.+.|. +| .+++..-.+..|.+.|.++++..    ..+..... +.....-..-....+.|
T Consensus       139 ~I~V~~---~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V~----~~idl~~l~~~~~~~~~~~~~vlNGI  209 (243)
T 3mbr_X          139 SIKVTA---GGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGKVV----AWIDLQALVPDADALTDSTNDVLNGI  209 (243)
T ss_dssp             EEECEE---TTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCBEE----EEEECGGGSTTTTSCCCTTSSCEEEE
T ss_pred             EEEEcc---CCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCCEE----EEEECCcCccccccccCCcCCceEEE
Confidence            433211   110 1335567766 66 67766656889999999999765    22221100 00000000012457899


Q ss_pred             EEccCCC-EEEEeCC
Q 015363          348 KFARNGR-HILSRDY  361 (408)
Q Consensus       348 ~~spdg~-~l~s~~d  361 (408)
                      +++|+++ ++++|-.
T Consensus       210 A~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          210 AFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEETTTTEEEEEETT
T ss_pred             EEcCCCCEEEEECCC
Confidence            9999755 5556644

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.16  E-value=0.00027  Score=67.77  Aligned_cols=80  Identities=6%  Similarity=0.166  Sum_probs=48.9

Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCC
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT  333 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  333 (408)
                      +.|..||+.+++...+. +       .+ .....-.+...+ .++++++.|+.++.||.++++.+    ..++....   
T Consensus       455 g~l~A~D~~tG~~~W~~-~-------~~-~~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~l----w~~~~~~~---  517 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEV-P-------YV-TIFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKL----WEQPAASG---  517 (689)
T ss_dssp             EEEEEEETTTTEEEEEE-E-------ES-SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEE----EEEECSSC---
T ss_pred             eeEEEEECCCCCeEeEc-c-------CC-CCccCccceECC-CEEEEECCCCcEEEEECCCCccc----eeeeCCCC---
Confidence            77889999865544442 1       11 112222444556 68888999999999999999765    33333210   


Q ss_pred             ccccccccceeEEEEEccCCCEEEE
Q 015363          334 RSFFTEIIASISDIKFARNGRHILS  358 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg~~l~s  358 (408)
                              ..-.-+.|..+|+..++
T Consensus       518 --------~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          518 --------VMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             --------CCSCCEEEEETTEEEEE
T ss_pred             --------cccCceEEEECCEEEEE
Confidence                    11123667788875543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.13  E-value=0.0082  Score=58.73  Aligned_cols=271  Identities=10%  Similarity=0.065  Sum_probs=145.9

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ...|.++...++|. |-.|+.++-|..|+..+....                        .+......    ..+ ....
T Consensus       309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~------------------------~~~~~~~~----~~l-~~~~  358 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK------------------------NIRNIPYK----NSL-SDNV  358 (795)
T ss_dssp             SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE------------------------EECCCTTS----SSC-SCSS
T ss_pred             CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce------------------------EEcCCCCC----CCC-CCCe
Confidence            35799999999888 556777777888886544310                        01000000    000 0144


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      |.++..  +.+|. |-.|+.++-|..|+..+++..........+........|.       ++...++|..+        
T Consensus       359 V~~i~~--d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-------~i~~d~~g~~l--------  420 (795)
T 4a2l_A          359 VSCIVE--DKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK-------AVYVDEKKSLV--------  420 (795)
T ss_dssp             EEEEEE--CTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE-------EEEEETTTTEE--------
T ss_pred             eEEEEE--CCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE-------EEEEcCCCCEE--------
Confidence            888877  55664 5567888789999988876554432110000001122343       45666667623        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecC
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK  274 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~  274 (408)
                          ..|+.++-|..++ ............ .  .......|.++...+++++.+... +.+.+||..+ +.... +...
T Consensus       421 ----Wigt~~~Gl~~~d-~~~~~~~~~~~~-~--~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~-~~~~~-~~~~  489 (795)
T 4a2l_A          421 ----YIGTHAGGLSILH-RNSGQVENFNQR-N--SQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQ-RSFTT-IEKE  489 (795)
T ss_dssp             ----EEEETTTEEEEEE-TTTCCEEEECTT-T--SCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTT-TEEEE-CCBC
T ss_pred             ----EEEeCcCceeEEe-CCCCcEEEeecC-C--CCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCC-CeEEE-cccc
Confidence                5555555566666 221110000000 0  002235689999999888777666 4588899873 32222 1100


Q ss_pred             CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363          275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       275 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                      ...-.-....|.++...++| .+.+. +. +-|..||..++..  . .......        -......|.++...++|.
T Consensus       490 ~~~~~~~~~~i~~i~~d~~g-~lWig-t~-~Gl~~~~~~~~~~--~-~~~~~~~--------~~l~~~~i~~i~~d~~g~  555 (795)
T 4a2l_A          490 KDGTPVVSKQITTLFRDSHK-RLWIG-GE-EGLSVFKQEGLDI--Q-KASILPV--------SNVTKLFTNCIYEASNGI  555 (795)
T ss_dssp             TTCCBCCCCCEEEEEECTTC-CEEEE-ES-SCEEEEEEETTEE--E-ECCCSCS--------CGGGGSCEEEEEECTTSC
T ss_pred             ccccccCCceEEEEEECCCC-CEEEE-eC-CceEEEeCCCCeE--E-EecCCCC--------CCCCCCeeEEEEECCCCC
Confidence            00001123568999999998 65554 44 4588888876532  0 0000000        001135789999999998


Q ss_pred             EEEEeCCCeEEEEECCCCCCceeeeee
Q 015363          355 HILSRDYMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       355 ~l~s~~d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      +.++... .|..||..+  ..+..+..
T Consensus       556 lWigT~~-Gl~~~d~~~--~~~~~~~~  579 (795)
T 4a2l_A          556 IWVGTRE-GFYCFNEKD--KQIKRYNT  579 (795)
T ss_dssp             EEEEESS-CEEEEETTT--TEEEEECG
T ss_pred             EEEEeCC-CceeECCCC--CcEEEeCC
Confidence            7766654 688888865  34444443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.03  E-value=0.0027  Score=56.15  Aligned_cols=184  Identities=9%  Similarity=0.051  Sum_probs=105.4

Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCcee
Q 015363          128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL  207 (408)
Q Consensus       128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  207 (408)
                      +|+.+ ....|+..++.............                .+..++|.+.+..+           +++-...+.|
T Consensus        89 ~l~~~-~~~~I~~i~~~~~~~~~~~~~~~----------------~~~gl~~d~~~~~l-----------y~~D~~~~~I  140 (386)
T 3v65_B           89 VLLFA-NRIDIRQVLPHRSEYTLLLNNLE----------------NAIALDFHHRRELV-----------FWSDVTLDRI  140 (386)
T ss_dssp             EEEEE-CBSCEEEECTTSCCCEEEECSCS----------------CEEEEEEETTTTEE-----------EEEETTTTEE
T ss_pred             eeEee-cCccceeeccCCCcEEEEecCCC----------------ccEEEEEecCCCeE-----------EEEeCCCCcE
Confidence            44444 34568888887765544433211                12267888766555           2444455667


Q ss_pred             eeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCe
Q 015363          208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI  285 (408)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  285 (408)
                      ..++ .....       ...+..........+++++.+..|..+  ..+.|.+.+++ +.....+       +.......
T Consensus       141 ~r~~-~~g~~-------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~~~~l-------~~~~l~~P  204 (386)
T 3v65_B          141 LRAN-LNGSN-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKP  204 (386)
T ss_dssp             EEEE-TTSCC-------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT-SCSCEEE-------ECSSCSCE
T ss_pred             EEEe-cCCCC-------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCceEEe-------ecCCCCCC
Confidence            6666 22211       111111122345678888766555544  67889888887 3322222       12223456


Q ss_pred             EEEEEcCCCCceEEEEeCC-CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-C-CC
Q 015363          286 TSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YM  362 (408)
Q Consensus       286 ~~~~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~-d~  362 (408)
                      ..++++|.+..++.+-... +.|..+++.....     ..+....           ......|+|+|++..|+.+ . .+
T Consensus       205 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~-----------~~~PnGlavd~~~~~lY~aD~~~~  268 (386)
T 3v65_B          205 RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-----RIIADTH-----------LFWPNGLTIDYAGRRMYWVDAKHH  268 (386)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EEEECSS-----------CSCEEEEEEEGGGTEEEEEETTTT
T ss_pred             cEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-----EEEEECC-----------CCCeeeEEEeCCCCEEEEEECCCC
Confidence            8999999773555554445 7888888875432     1111110           1356899999987777766 3 38


Q ss_pred             eEEEEECCC
Q 015363          363 TLKLWDINM  371 (408)
Q Consensus       363 ~v~~wd~~~  371 (408)
                      .|..+|++.
T Consensus       269 ~I~~~d~dG  277 (386)
T 3v65_B          269 VIERANLDG  277 (386)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEeCCC
Confidence            899999863

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=0.0058  Score=59.65  Aligned_cols=264  Identities=10%  Similarity=0.080  Sum_probs=140.9

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ...|.++...++|. |-.|+.++-|..++.......                        .+...... .....+ ....
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~------------------------~~~~~~~~-~~~~~l-~~~~  364 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFH------------------------TWSYSPTQ-MNESSL-SNKV  364 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCE------------------------EEC----C-CCSSCC-SSSC
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcce------------------------eeccCccc-cccCCC-CCcc
Confidence            46799999998887 556676677888886544321                        11000000 000000 0144


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      |.++..  +.+|. |-.|+.++-|..++..++.......    + ...+...|.       ++...++|..         
T Consensus       365 v~~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~----~-~~~~~~~v~-------~i~~d~~g~l---------  420 (781)
T 3v9f_A          365 VSSVCD--DGQGK-LWIGTDGGGINVFENGKRVAIYNKE----N-RELLSNSVL-------CSLKDSEGNL---------  420 (781)
T ss_dssp             EEEEEE--CTTSC-EEEEEBSSCEEEEETTEEEEECC----------CCCSBEE-------EEEECTTSCE---------
T ss_pred             eEEEEE--cCCCC-EEEEeCCCcEEEEECCCCeEEEccC----C-CCCCCcceE-------EEEECCCCCE---------
Confidence            888877  45564 5567766778888887654332210    0 011122343       4555555554         


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeec--cccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEee
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA--HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~  272 (408)
                          ..++.++-+..++ .....       .+.+.  ......|.++...+++.+.+... +.|..||..+. .......
T Consensus       421 ----Wigt~~~Gl~~~~-~~~~~-------~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~-~~~~~~~  486 (781)
T 3v9f_A          421 ----WFGTYLGNISYYN-TRLKK-------FQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASK-KVIHHYD  486 (781)
T ss_dssp             ----EEEETTEEEEEEC-SSSCE-------EEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSS-SCCEEEC
T ss_pred             ----EEEeccCCEEEEc-CCCCc-------EEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCC-eEEeccc
Confidence                4445545566555 21110       01110  11235688999888887666556 56888998733 2222211


Q ss_pred             cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363          273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN  352 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd  352 (408)
                      ...  .......|.++...++| .+.+ |+.++-|..||..+++..     .+.....      +  ....|.++...++
T Consensus       487 ~~~--~~~~~~~i~~i~~d~~g-~lWi-gt~~~Gl~~~~~~~~~~~-----~~~~~~~------l--~~~~i~~i~~d~~  549 (781)
T 3v9f_A          487 TSN--SQLLENFVRSIAQDSEG-RFWI-GTFGGGVGIYTPDMQLVR-----KFNQYEG------F--CSNTINQIYRSSK  549 (781)
T ss_dssp             TTT--SSCSCSCEEEEEECTTC-CEEE-EESSSCEEEECTTCCEEE-----EECTTTT------C--SCSCEEEEEECTT
T ss_pred             Ccc--cccccceeEEEEEcCCC-CEEE-EEcCCCEEEEeCCCCeEE-----EccCCCC------C--CCCeeEEEEECCC
Confidence            100  01124668999999998 5544 444344777888765431     1211100      0  0246899999999


Q ss_pred             CCEEEEeCCCeEEEEECCCCCCceeeeeec
Q 015363          353 GRHILSRDYMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       353 g~~l~s~~d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      |.+.++...|-|..||..+  ..+..+...
T Consensus       550 g~lWi~T~~Glv~~~d~~~--~~~~~~~~~  577 (781)
T 3v9f_A          550 GQMWLATGEGLVCFPSARN--FDYQVFQRK  577 (781)
T ss_dssp             SCEEEEETTEEEEESCTTT--CCCEEECGG
T ss_pred             CCEEEEECCCceEEECCCC--CcEEEcccc
Confidence            9877766655548888865  234444433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=0.0047  Score=55.46  Aligned_cols=254  Identities=10%  Similarity=0.064  Sum_probs=126.3

Q ss_pred             cceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           36 DIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        36 ~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      .....|+++| ++..|+.+...+.|+.+|.+++..                        ..+....            ..
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v------------------------~~~~~~~------------~~  180 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV------------------------STVYSGL------------SK  180 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE------------------------EEEECCC------------SC
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE------------------------EEEecCC------------CC
Confidence            3457889998 455566665557888888776532                        1221111            44


Q ss_pred             eeEEEEeecCCCcEEEEEeC-CC----eEEEEEcCCCcEE--EEeccCCCCcccCCCCCeEeecCCceeeEEcc-CCCee
Q 015363          115 INKIRWCQSANSALYLLSTN-DK----TIKLWKVQEKKVK--KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCG  186 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~-d~----~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l  186 (408)
                      ...|+|.  ++|.+|+++.. ++    .+.+.+.. +...  ..+..                ...+..+++.| +|...
T Consensus       181 P~~ia~d--~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~----------------~~~p~giavdp~~g~ly  241 (430)
T 3tc9_A          181 VRTICWT--HEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK----------------GQNCNGAETHPINGELY  241 (430)
T ss_dssp             EEEEEEC--TTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE----------------CSSCCCEEECTTTCCEE
T ss_pred             cceEEEe--CCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc----------------CCCceEEEEeCCCCEEE
Confidence            7889995  45775655543 21    23333332 2211  11111                11122577888 55543


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEIS  264 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~  264 (408)
                                  ++-...+.|..++ .......      ...........+.++|+|++++|..+  ..+.|..++.+..
T Consensus       242 ------------v~d~~~~~V~~~~-~~~~~~~------~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~  302 (430)
T 3tc9_A          242 ------------FNSWNAGQVFRYD-FTTQETT------PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWK  302 (430)
T ss_dssp             ------------EEETTTTEEEEEE-TTTTEEE------EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ------------EEECCCCEEEEEE-CCCCcEE------EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcc
Confidence                        4444566777766 3211110      11111122456789999999955554  6889999887632


Q ss_pred             Ccee----eEeec-CCCccc------CCcCCeE-EEEEc--------CCCCceEEEEeCCCeEEEEEcCCCceecccccc
Q 015363          265 NQSF----NIVDV-KPANME------DLTEVIT-SAEFH--------PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL  324 (408)
Q Consensus       265 ~~~~----~~~~~-~~~~~~------~~~~~v~-~~~~~--------p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  324 (408)
                      ...+    .+... ....+.      ..-.... .+...        +++ .++++=...+.|+.++. .+..     ..
T Consensus       303 ~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~-~G~v-----~~  375 (430)
T 3tc9_A          303 TKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTP-QGRV-----TT  375 (430)
T ss_dssp             TTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECT-TSEE-----EE
T ss_pred             cccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECC-CCcE-----EE
Confidence            1111    11100 000000      0111223 45553        345 56666566788888883 3432     22


Q ss_pred             cccccC---CCC-c--cccccccceeEEEEEccC-CCEEEEeC-CCeEEEEECC
Q 015363          325 FEEQEA---PGT-R--SFFTEIIASISDIKFARN-GRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       325 ~~~~~~---~~~-~--~~~~~h~~~i~~~~~spd-g~~l~s~~-d~~v~~wd~~  370 (408)
                      +.+...   ... .  ......-.....++++|+ +.++++-. .+.|+.++++
T Consensus       376 ~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          376 FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            221100   000 0  000001135789999995 54444433 3788887763

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.01  E-value=0.0013  Score=53.92  Aligned_cols=198  Identities=10%  Similarity=0.004  Sum_probs=111.8

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      .-...+.|.   ++.++.+.+.+|.|+++|+++++..... ....         .+       .....+++..+      
T Consensus        55 ~ftqGL~~~---~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~---------~F-------geGit~~g~~L------  108 (268)
T 3nok_A           55 AFTQGLVFH---QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN---------IF-------AEGLASDGERL------  108 (268)
T ss_dssp             CCEEEEEEE---TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT---------CC-------EEEEEECSSCE------
T ss_pred             cccceEEEE---CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC---------cc-------eeEEEEeCCEE------
Confidence            335678884   3567788889999999999999887766 3221         11       11123334433      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                           ....-.++.+.+|| ...      .+.+..+...  ..-..+  .+++..|+.+ .++.|.++|..+. +....+
T Consensus       109 -----y~ltw~~~~v~V~D-~~T------l~~~~ti~~~--~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I  171 (268)
T 3nok_A          109 -----YQLTWTEGLLFTWS-GMP------PQRERTTRYS--GEGWGL--CYWNGKLVRSDGGTMLTFHEPDGF-ALVGAV  171 (268)
T ss_dssp             -----EEEESSSCEEEEEE-TTT------TEEEEEEECS--SCCCCE--EEETTEEEEECSSSEEEEECTTTC-CEEEEE
T ss_pred             -----EEEEccCCEEEEEE-CCc------CcEEEEEeCC--CceeEE--ecCCCEEEEECCCCEEEEEcCCCC-eEEEEE
Confidence                 23345678888888 322      2222222111  111233  3567888887 7899999999854 444443


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC-CCCccccccccceeEEEEEc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA-PGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~i~~~~~s  350 (408)
                      .+...  ...-..++.+.|. +| .+++..-.+..|.+.|.++++...    .+..... +........-....+.|+|+
T Consensus       172 ~V~~~--g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V~~----~Idl~~L~~~~~~~~~~~~~vlNGIA~d  243 (268)
T 3nok_A          172 QVKLR--GQPVELINELECA-NG-VIYANIWHSSDVLEIDPATGTVVG----VIDASALTRAVAGQVTNPEAVLNGIAVE  243 (268)
T ss_dssp             ECEET--TEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCBEEE----EEECHHHHHHHTTTCCCTTCCEEEEEEC
T ss_pred             EeCCC--CcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCcEEE----EEECCCCcccccccccCcCCceEEEEEc
Confidence            32110  0011235677777 77 777766678899999999997652    2211100 00000000002357899999


Q ss_pred             cCC-CEEEEeCC
Q 015363          351 RNG-RHILSRDY  361 (408)
Q Consensus       351 pdg-~~l~s~~d  361 (408)
                      |++ +++++|-.
T Consensus       244 p~~~rlfVTGK~  255 (268)
T 3nok_A          244 PGSGRIFMTGKL  255 (268)
T ss_dssp             TTTCCEEEEETT
T ss_pred             CCCCEEEEeCCC
Confidence            965 56667743

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.00  E-value=0.0081  Score=58.65  Aligned_cols=261  Identities=13%  Similarity=0.104  Sum_probs=141.4

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ...|.++...++|. |-.|+.++-|..|+..++...                        .+.... .       .....
T Consensus       362 ~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~------------------------~~~~~~-~-------~~~~~  408 (781)
T 3v9f_A          362 NKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI------------------------YNKENR-E-------LLSNS  408 (781)
T ss_dssp             SSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE------------------------CC-------------CCCSB
T ss_pred             CcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE------------------------EccCCC-C-------CCCcc
Confidence            35689999988887 556666666888886543210                        000000 0       00145


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      |.++..  +.+|. |..|+.++-+..++..+++.......      ..+...+.       ++...++|..         
T Consensus       409 v~~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~------~~~~~~v~-------~i~~d~~g~l---------  463 (781)
T 3v9f_A          409 VLCSLK--DSEGN-LWFGTYLGNISYYNTRLKKFQIIELE------KNELLDVR-------VFYEDKNKKI---------  463 (781)
T ss_dssp             EEEEEE--CTTSC-EEEEETTEEEEEECSSSCEEEECCST------TTCCCCEE-------EEEECTTSEE---------
T ss_pred             eEEEEE--CCCCC-EEEEeccCCEEEEcCCCCcEEEeccC------CCCCCeEE-------EEEECCCCCE---------
Confidence            888876  45564 55577777788899887765443211      01122333       4555555554         


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecC
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK  274 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~  274 (408)
                          ..++. +-+..++ ............ .. .......|.++...++|.+.+...++-|..||.+. +. +..+.. 
T Consensus       464 ----wigt~-~Gl~~~~-~~~~~~~~~~~~-~~-~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~-  532 (781)
T 3v9f_A          464 ----WIGTH-AGVFVID-LASKKVIHHYDT-SN-SQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDM-QL-VRKFNQ-  532 (781)
T ss_dssp             ----EEEET-TEEEEEE-SSSSSCCEEECT-TT-SSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTC-CE-EEEECT-
T ss_pred             ----EEEEC-CceEEEe-CCCCeEEecccC-cc-cccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCC-Ce-EEEccC-
Confidence                33333 3455555 221111000000 00 00113568999999999888777534477788763 32 222211 


Q ss_pred             CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363          275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR  354 (408)
Q Consensus       275 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~  354 (408)
                      ...+  ....|.++...++| .+.+ |+.+|.|..||..+++.     ..+.....      +.  ...|.++...++|.
T Consensus       533 ~~~l--~~~~i~~i~~d~~g-~lWi-~T~~Glv~~~d~~~~~~-----~~~~~~~g------l~--~~~i~~i~~d~~g~  595 (781)
T 3v9f_A          533 YEGF--CSNTINQIYRSSKG-QMWL-ATGEGLVCFPSARNFDY-----QVFQRKEG------LP--NTHIRAISEDKNGN  595 (781)
T ss_dssp             TTTC--SCSCEEEEEECTTS-CEEE-EETTEEEEESCTTTCCC-----EEECGGGT------CS--CCCCCEEEECSSSC
T ss_pred             CCCC--CCCeeEEEEECCCC-CEEE-EECCCceEEECCCCCcE-----EEccccCC------CC--CceEEEEEECCCCC
Confidence            0111  24568999999998 6544 44567658888876643     22211110      00  13577888888998


Q ss_pred             EEEEeCCCeEEEEECCCCCCceeeeeeccc
Q 015363          355 HILSRDYMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       355 ~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      +.+++..| |..|+..+  ..+..+....+
T Consensus       596 lW~~t~~G-l~~~~~~~--~~~~~~~~~dG  622 (781)
T 3v9f_A          596 IWASTNTG-ISCYITSK--KCFYTYDHSNN  622 (781)
T ss_dssp             EEEECSSC-EEEEETTT--TEEEEECGGGT
T ss_pred             EEEEcCCc-eEEEECCC--CceEEecccCC
Confidence            77776554 77778764  44555554444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.97  E-value=0.0017  Score=53.28  Aligned_cols=203  Identities=9%  Similarity=0.087  Sum_probs=111.4

Q ss_pred             eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL  254 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~  254 (408)
                      .+++.|++..+           +++...++.|...| ..       ++..+.+........-.|++.+++.++++. .++
T Consensus        31 Gla~~~~~~~L-----------~aV~d~~~~I~~ld-~~-------g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~   91 (255)
T 3qqz_A           31 SLTWSAQSNTL-----------FSTINKPAAIVEMT-TN-------GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDY   91 (255)
T ss_dssp             EEEEETTTTEE-----------EEEEETTEEEEEEE-TT-------CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTT
T ss_pred             eeEEeCCCCEE-----------EEEECCCCeEEEEe-CC-------CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCC
Confidence            68888887765           23355566666655 21       122222111222457788999988877777 788


Q ss_pred             eEEEEeCCCCCc--eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363          255 RINLWNLEISNQ--SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG  332 (408)
Q Consensus       255 ~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  332 (408)
                      .+.++++.....  ....+.+. ..........-.++|+|.+ +.|.++.......||.++ +..-...+..+.....  
T Consensus        92 ~l~~~~v~~~~~i~~~~~~~~~-~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~-g~~~~~~l~i~~~~~~--  166 (255)
T 3qqz_A           92 AIYVISLTPNSEVKILKKIKIP-LQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVN-GLLSSNELHISKDKAL--  166 (255)
T ss_dssp             EEEEEEECTTCCEEEEEEEECC-CSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEE-STTCSSCCEEEECHHH--
T ss_pred             cEEEEEcCCCCeeeeeeeeccc-cccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEc-ccccCCceeeecchhh--
Confidence            999999875543  12222211 0012234557899999998 555555555445555554 1100000111110000  


Q ss_pred             CccccccccceeEEEEEccCCC-EEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeeceeeec
Q 015363          333 TRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTLY  407 (408)
Q Consensus       333 ~~~~~~~h~~~i~~~~~spdg~-~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  407 (408)
                       .  -..+...+.+++++|... +++.++ ...|..+|.+  ++.+..+.-..+.-.....+-+.+=|++|.-.+||
T Consensus       167 -~--~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly  238 (255)
T 3qqz_A          167 -Q--RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY  238 (255)
T ss_dssp             -H--HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE
T ss_pred             -c--cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE
Confidence             0  000123568899999654 444454 4899999985  56777665544322211224466677888877777

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.97  E-value=0.0021  Score=62.36  Aligned_cols=199  Identities=8%  Similarity=-0.009  Sum_probs=103.7

Q ss_pred             ceEEEEEC-CCCCeEEEeec-C----CeEEEEEeCCC-CCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           37 IISAIEFD-KSGDHLATGDR-G----GRVVLFERTDT-RDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        37 ~V~~~~~s-~~~~~l~sg~~-d----g~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      .+...+|| |||++||.+.. +    .+|+++|+.++ +..                      ...+.            
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l----------------------~~~~~------------  220 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI----------------------ADKVS------------  220 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----------------------CCCEE------------
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----------------------Ccccc------------
Confidence            67889999 99998886543 2    25999999877 421                      00000            


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCC-----CeEEEEEcCCCcE--EEEeccCCCCcccCCCCCeEeecCCceeeEEccC
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTND-----KTIKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN  182 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d-----~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  182 (408)
                         .....++|+|+  |+.|+....|     ..|.++++.++..  ..++.....       ...       ..+.|+||
T Consensus       221 ---~~~~~~~WspD--g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~-------~~~-------~~~~~SpD  281 (751)
T 2xe4_A          221 ---GTNGEIVWGPD--HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNP-------LFS-------AFMYKAAD  281 (751)
T ss_dssp             ---EECSCCEECSS--TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCT-------TCE-------EEEEECTT
T ss_pred             ---CceeeEEEecC--CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCC-------ceE-------EEEEECCC
Confidence               12456889755  7777777654     3577788876542  222221110       111       15789999


Q ss_pred             CCeeecccccccCccccCCCCCceeeeceeeecccccccccc-ceeeccccccceEEEEeCCCCCEEEEe-cC----CeE
Q 015363          183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGC-RRIYAHAHDYHINSISNNSDGETFISA-DD----LRI  256 (408)
Q Consensus       183 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d----~~i  256 (408)
                      |+.|.....         ......|.++| +.....    .. .+.+.........++.|+..+.+++.+ .+    ..|
T Consensus       282 g~~l~~~~~---------~~~~~~l~~~d-~~~~~~----~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L  347 (751)
T 2xe4_A          282 TNTLCIGSQ---------SPETAEVHLLD-LRKGNA----HNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKL  347 (751)
T ss_dssp             SSEEEEEEE---------CSSCEEEEEEE-SSSCTT----CCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEE
T ss_pred             CCEEEEEec---------CCCCceEEEEE-CCCCCC----CceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEE
Confidence            998732111         11345566666 332110    11 012223333445556655444455555 33    356


Q ss_pred             EEEeCCCCCceee-EeecCCCcccCCcC--CeEEEEEcCCCCceEEEEeCCCeEE--EEEc
Q 015363          257 NLWNLEISNQSFN-IVDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIR--LIDM  312 (408)
Q Consensus       257 ~iwd~~~~~~~~~-~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~--iwd~  312 (408)
                      ..+|+........ ++       . +..  .+..+.+.  +..++++...++..+  ++++
T Consensus       348 ~~~d~~~~~~~~~~li-------~-~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          348 LIAPRGQPSDWSHVLV-------D-HSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEETTSTTCCCCEEE-------C-CCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEcCCCcccceeeEE-------C-CCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence            6667653222122 21       1 222  34455554  436677777787644  4554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.96  E-value=0.0027  Score=60.57  Aligned_cols=63  Identities=6%  Similarity=0.060  Sum_probs=42.4

Q ss_pred             CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363          304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      +|.|..||+.+++..-    .....             .......+...+.+|+.++ |+.|+.||.++ ++.+..++..
T Consensus       437 ~g~l~A~D~~tG~~~W----~~~~~-------------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t-G~~l~~~~~~  498 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAW----KVPYP-------------THWNGGTLSTAGNLVFQGTAAGQMHAYSADK-GEALWQFEAQ  498 (668)
T ss_dssp             EEEEEEEETTTTEEEE----EEEES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             cceEEEEeCCCCcEEE----EccCC-------------CCCcCceeEeCCCEEEEECCcccchhhhhhc-ChhheEecCC
Confidence            3789999999987542    22211             1122233445677788775 69999999998 7888888765


Q ss_pred             cc
Q 015363          383 EH  384 (408)
Q Consensus       383 ~~  384 (408)
                      ..
T Consensus       499 ~~  500 (668)
T 1kv9_A          499 SG  500 (668)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.95  E-value=0.008  Score=52.29  Aligned_cols=184  Identities=9%  Similarity=0.054  Sum_probs=105.9

Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCcee
Q 015363          128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL  207 (408)
Q Consensus       128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  207 (408)
                      +|+.+. ...|+..++.............                .+..++|.+....+           +++-...+.|
T Consensus        46 ~ll~~~-~~~I~~i~~~g~~~~~~~~~~~----------------~~~~l~~d~~~~~l-----------y~~D~~~~~I   97 (349)
T 3v64_C           46 VLLFAN-RIDIRQVLPHRSEYTLLLNNLE----------------NAIALDFHHRRELV-----------FWSDVTLDRI   97 (349)
T ss_dssp             EEEEEC-BSCEEEECTTSCCEEEEECSCS----------------CEEEEEEETTTTEE-----------EEEETTTTEE
T ss_pred             eeEeec-ccceEEEeCCCCeeEEeecCCC----------------ceEEEEEeccccEE-----------EEEeccCCce
Confidence            444433 3457777887665544433211                11267888766655           2444455667


Q ss_pred             eeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCe
Q 015363          208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI  285 (408)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  285 (408)
                      ..++ .....       ...+..........+++++.+..|..+  ..+.|.+.+++ +.....+       +.......
T Consensus        98 ~r~~-~~g~~-------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-------~~~~l~~P  161 (349)
T 3v64_C           98 LRAN-LNGSN-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKP  161 (349)
T ss_dssp             EEEE-TTSCS-------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECTTCSCE
T ss_pred             EEEe-cCCCC-------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceEEE-------EeCCCCCc
Confidence            6665 32211       111111122345678898866555544  67899999988 3322222       12223456


Q ss_pred             EEEEEcCCCCceEEEEeCC-CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC--CC
Q 015363          286 TSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YM  362 (408)
Q Consensus       286 ~~~~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~--d~  362 (408)
                      ..++++|.+..++.+-... +.|..+++.....     ..+....           ......++|+|++..|+.++  .+
T Consensus       162 ~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~-----------~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          162 RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-----RIIADTH-----------LFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EESCCSS-----------CSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-----EEEEECC-----------CCCcceEEEeCCCCEEEEEECCCC
Confidence            8999999663555555555 7899988875432     1111111           13578999999887777763  38


Q ss_pred             eEEEEECCC
Q 015363          363 TLKLWDINM  371 (408)
Q Consensus       363 ~v~~wd~~~  371 (408)
                      .|..+|++.
T Consensus       226 ~I~~~~~dG  234 (349)
T 3v64_C          226 VIERANLDG  234 (349)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEEeCCC
Confidence            999999863

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.94  E-value=0.0075  Score=51.66  Aligned_cols=187  Identities=5%  Similarity=-0.039  Sum_probs=105.5

Q ss_pred             EEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceee
Q 015363          129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR  208 (408)
Q Consensus       129 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  208 (408)
                      |+.+.. ..|+..|+.+.+...+.....                .+..+.|.+.+..+           +++-...+.|.
T Consensus         4 ll~~~~-~~I~~i~~~~~~~~~~~~~~~----------------~p~g~~~d~~~~~l-----------y~~D~~~~~I~   55 (316)
T 1ijq_A            4 LFFTNR-HEVRKMTLDRSEYTSLIPNLR----------------NVVALDTEVASNRI-----------YWSDLSQRMIC   55 (316)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEEECSCS----------------SEEEEEEETTTTEE-----------EEEETTTTEEE
T ss_pred             EEEECC-CeEEEEECCCcceEehhcCCC----------------ceEEEEEEeCCCEE-----------EEEECCCCcEE
Confidence            444333 468888988776554433211                12267888766555           24445567777


Q ss_pred             eceeeeccccccccccceeeccccccceEEEEeCCCCCEEE-Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE
Q 015363          209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT  286 (408)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  286 (408)
                      .++ +....   .......+..........+++++.+..|. +- ..+.|.+++.. +.....++       ........
T Consensus        56 ~~~-~~g~~---~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~  123 (316)
T 1ijq_A           56 STQ-LDRAH---GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPR  123 (316)
T ss_dssp             EEE-C-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEE
T ss_pred             EEE-CCCCC---CCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEEE-------ECCCCCcc
Confidence            766 33210   00011111122223457888987555554 44 68899999987 33332221       11234568


Q ss_pred             EEEEcCCCCceEEEEeCC-CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-C-Ce
Q 015363          287 SAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MT  363 (408)
Q Consensus       287 ~~~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d-~~  363 (408)
                      .++++|.+..++.+.... +.|...++.....     ..+....           ......++++|++..|+.++ . +.
T Consensus       124 ~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-----~~~~~~~-----------~~~P~gla~d~~~~~lY~~D~~~~~  187 (316)
T 1ijq_A          124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKLHS  187 (316)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCCE-----EEEECSS-----------CSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             eEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-----EEEEECC-----------CCCceEEEEeccCCEEEEEECCCCe
Confidence            999999662555554333 7888888764322     1121111           13578999999888777763 3 89


Q ss_pred             EEEEECCC
Q 015363          364 LKLWDINM  371 (408)
Q Consensus       364 v~~wd~~~  371 (408)
                      |..+|++.
T Consensus       188 I~~~d~dg  195 (316)
T 1ijq_A          188 ISSIDVNG  195 (316)
T ss_dssp             EEEEETTS
T ss_pred             EEEEecCC
Confidence            99999963

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.88  E-value=0.0029  Score=60.37  Aligned_cols=78  Identities=13%  Similarity=0.048  Sum_probs=48.5

Q ss_pred             EEEECC-CCCeEEEeecCC-----------eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeecc-CCcccccc
Q 015363           40 AIEFDK-SGDHLATGDRGG-----------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYL  106 (408)
Q Consensus        40 ~~~~s~-~~~~l~sg~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~  106 (408)
                      ++++.+ ++++++.|+.+.           .+.+||..+++..                     .+..+.. +.      
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~---------------------~~~~~~~~~~------  242 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS---------------------DRTVTVTKHD------  242 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC---------------------CCEEEECSCC------
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE---------------------eCcccCCCCC------
Confidence            456666 888888887543           5778888776532                     1111111 11      


Q ss_pred             cccccccceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCCCcEEEEe
Q 015363          107 KSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVF  152 (408)
Q Consensus       107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~  152 (408)
                            ....++++.  .++.++++|+ .+..+.+||..+++.....
T Consensus       243 ------~~~~~~~~~--~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~  281 (656)
T 1k3i_A          243 ------MFCPGISMD--GNGQIVVTGGNDAKKTSLYDSSSDSWIPGP  281 (656)
T ss_dssp             ------CSSCEEEEC--TTSCEEEECSSSTTCEEEEEGGGTEEEECC
T ss_pred             ------CccccccCC--CCCCEEEeCCCCCCceEEecCcCCceeECC
Confidence                  112335553  4588888888 4568999999988776653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.84  E-value=0.0056  Score=55.00  Aligned_cols=219  Identities=10%  Similarity=0.044  Sum_probs=113.3

Q ss_pred             ceeEEEEeec-CCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          114 KINKIRWCQS-ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       114 ~v~~v~~~p~-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ....|+|.|+ .++ .|..+...+.|+.++..+++.........                .+..+++.++|...      
T Consensus       140 ~P~gvavd~~s~~g-~Lyv~D~~~~I~~id~~~g~v~~~~~~~~----------------~P~giavd~dG~ly------  196 (433)
T 4hw6_A          140 NIWRMMFDPNSNYD-DLYWVGQRDAFRHVDFVNQYVDIKTTNIG----------------QCADVNFTLNGDMV------  196 (433)
T ss_dssp             CCCEEEECTTTTTC-EEEEECBTSCEEEEETTTTEEEEECCCCS----------------CEEEEEECTTCCEE------
T ss_pred             CCceEEEccccCCC-EEEEEeCCCCEEEEECCCCEEEEeecCCC----------------CccEEEECCCCCEE------
Confidence            3668899652 234 45555444899999998887665443111                12268889998833      


Q ss_pred             ccCccccCCCCC----ceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-cCCeEEEEeCCCCCc
Q 015363          193 ASNDSSFPPGGV----SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       193 ~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                            ++....    ..+...+   ........   ..+  ........++++| ++.++++- .++.|+.+|..+...
T Consensus       197 ------Vad~~~~~~~~gv~~~~---~~~~~~~~---~~~--~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~  262 (433)
T 4hw6_A          197 ------VVDDQSSDTNTGIYLFT---RASGFTER---LSL--CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL  262 (433)
T ss_dssp             ------EEECCSCTTSEEEEEEC---GGGTTCCE---EEE--EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred             ------EEcCCCCcccceEEEEE---CCCCeecc---ccc--cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence                  221111    1121111   10000000   011  1123456788999 67766666 788999999873332


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEcCCCCc-eEEEEeCCCeEEEEEcCC--Cceecccccccccc-cCCCCcc--ccccc
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQ-EAPGTRS--FFTEI  340 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~-~~~~~~~--~~~~h  340 (408)
                      ...+...     . .......++|+|++ + ++++-...+.|+.+++..  +...  ....+.+. .......  .....
T Consensus       263 ~~~~~~~-----~-~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~  333 (433)
T 4hw6_A          263 TEEEVMM-----D-TKGSNFHIVWHPTG-DWAYIIYNGKHCIYRVDYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGAR  333 (433)
T ss_dssp             EEEEEEC-----S-CCSSCEEEEECTTS-SEEEEEETTTTEEEEEEBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSB
T ss_pred             EEEEecc-----C-CCCCcccEEEeCCC-CEEEEEeCCCCEEEEEeCCCCCcccC--cEEEEEecCCCCccCCCcccceE
Confidence            1222211     1 12223579999999 6 555556678999988753  2110  00112111 0000000  00001


Q ss_pred             cceeEEEEE---------ccCCCEEEEeC-CCeEEEEECCCCCCceeeeee
Q 015363          341 IASISDIKF---------ARNGRHILSRD-YMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       341 ~~~i~~~~~---------spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      ......+++         .++|.+.++-. .+.|+.++.  .+ .+.++-+
T Consensus       334 ~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~--~G-~v~t~~G  381 (433)
T 4hw6_A          334 LWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP--EG-RVTTYAG  381 (433)
T ss_dssp             CSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT--TS-EEEEEEC
T ss_pred             EcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC--CC-CEEEEEe
Confidence            134677899         66776666654 488999885  24 3444443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.81  E-value=0.0085  Score=53.80  Aligned_cols=157  Identities=10%  Similarity=0.108  Sum_probs=89.9

Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      ....|++.|. ++..|.++...+.|+.+|+.++.........                ..+..+++.++|+.+       
T Consensus       138 ~P~~lavdp~-~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~----------------~~P~~ia~d~~G~~l-------  193 (430)
T 3tc9_A          138 GAVWLSFDPK-NHNHLYLVGEQHPTRLIDFEKEYVSTVYSGL----------------SKVRTICWTHEADSM-------  193 (430)
T ss_dssp             CCCEEEEETT-EEEEEEEEEBTEEEEEEETTTTEEEEEECCC----------------SCEEEEEECTTSSEE-------
T ss_pred             CCCEEEECCC-CCCeEEEEeCCCcEEEEECCCCEEEEEecCC----------------CCcceEEEeCCCCEE-------
Confidence            4578888641 1235555555588999999887765544321                112268899999855       


Q ss_pred             cCccccCCCCCc----eeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          194 SNDSSFPPGGVS----SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       194 ~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                          +++....+    .+...+  ..... ...   ..+ . .......++++| ++.++++- .++.|..++... ...
T Consensus       194 ----yvad~~~~~~~~~v~~~~--~~g~~-~~~---~~l-~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~  260 (430)
T 3tc9_A          194 ----IITNDQNNNDRPNNYILT--RESGF-KVI---TEL-T-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT-QET  260 (430)
T ss_dssp             ----EEEECCSCTTSEEEEEEE--GGGTS-CSE---EEE-E-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT-TEE
T ss_pred             ----EEEeCCCCcccceEEEEe--CCCce-eee---eee-c-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcE
Confidence                12222111    122222  11110 000   111 1 123456788999 67766666 788999999883 332


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCc-eEEEEeCCCeEEEEEcCC
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ  314 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~  314 (408)
                      ..+..     ... ......++|+|++ + ++++-...+.|..++...
T Consensus       261 ~~~~~-----~~~-~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          261 TPLFT-----IQD-SGWEFHIQFHPSG-NYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEEE-----CSS-SSCCEEEEECTTS-SEEEEEETTTTEEEEEEEET
T ss_pred             EEEEE-----cCC-CCcceeEEEcCCC-CEEEEEECCCCEEEEEeCCc
Confidence            22211     111 2346789999999 6 556656678999988764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.78  E-value=0.019  Score=51.54  Aligned_cols=128  Identities=5%  Similarity=-0.008  Sum_probs=69.0

Q ss_pred             eEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCce----eeEeec-CCCcc------cCCcCCeEEEEE---------cCC
Q 015363          236 INSISNNSDGETFISA--DDLRINLWNLEISNQS----FNIVDV-KPANM------EDLTEVITSAEF---------HPT  293 (408)
Q Consensus       236 v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~----~~~~~~-~~~~~------~~~~~~v~~~~~---------~p~  293 (408)
                      -..++|+|+++.|..+  ..+.|..++.......    ..+... ....+      ...-.....+++         .++
T Consensus       275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~  354 (433)
T 4hw6_A          275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE  354 (433)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC
T ss_pred             cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC
Confidence            3469999999966555  6789999887632111    111110 00000      001234577999         777


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceecccccccccccC---CCCc---cccccccceeEEEEEc-cCCCEEEEeC-CCeEE
Q 015363          294 HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA---PGTR---SFFTEIIASISDIKFA-RNGRHILSRD-YMTLK  365 (408)
Q Consensus       294 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~h~~~i~~~~~s-pdg~~l~s~~-d~~v~  365 (408)
                      + .++++-...+.|+.++. .+..     .++.+...   ....   ............|+++ ++|.++++-. .+.|+
T Consensus       355 g-~lyvaD~~n~~I~~~~~-~G~v-----~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr  427 (433)
T 4hw6_A          355 Y-DFYFCDRDSHTVRVLTP-EGRV-----TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVR  427 (433)
T ss_dssp             E-EEEEEETTTTEEEEECT-TSEE-----EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred             C-cEEEEECCCCEEEEECC-CCCE-----EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence            7 77777667789999985 4432     22222110   0000   0000012347889999 5665555543 47888


Q ss_pred             EEECC
Q 015363          366 LWDIN  370 (408)
Q Consensus       366 ~wd~~  370 (408)
                      .++++
T Consensus       428 ~i~~e  432 (433)
T 4hw6_A          428 KIAPE  432 (433)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            87763

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.78  E-value=0.0045  Score=53.19  Aligned_cols=157  Identities=8%  Similarity=0.043  Sum_probs=88.0

Q ss_pred             eeEEEEeecC-CCcEEEEEeC-----------------CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCcee
Q 015363          115 INKIRWCQSA-NSALYLLSTN-----------------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP  176 (408)
Q Consensus       115 v~~v~~~p~~-~~~~l~~~~~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (408)
                      .+.+++.  + +|.++++-..                 ++.|..+|..+++........                ..+..
T Consensus       128 p~~i~~d--~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~----------------~~p~g  189 (322)
T 2fp8_A          128 LYAVTVD--QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL----------------HVPGG  189 (322)
T ss_dssp             EEEEEEC--TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEE----------------SCCCE
T ss_pred             cceEEEe--cCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCC----------------ccCcc
Confidence            6778884  5 5766655422                 367888888777654332211                11225


Q ss_pred             eEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c---
Q 015363          177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---  252 (408)
Q Consensus       177 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~---  252 (408)
                      ++++++|+.+           +++-...+.|..|+ +.....   .. ...+.. ... ...++++++|+++++. .   
T Consensus       190 ia~~~dg~~l-----------yv~d~~~~~I~~~~-~~~~~~---~~-~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~  251 (322)
T 2fp8_A          190 AEVSADSSFV-----------LVAEFLSHQIVKYW-LEGPKK---GT-AEVLVK-IPN-PGNIKRNADGHFWVSSSEELD  251 (322)
T ss_dssp             EEECTTSSEE-----------EEEEGGGTEEEEEE-SSSTTT---TC-EEEEEE-CSS-EEEEEECTTSCEEEEEEEETT
T ss_pred             eEECCCCCEE-----------EEEeCCCCeEEEEE-CCCCcC---Cc-cceEEe-CCC-CCCeEECCCCCEEEEecCccc
Confidence            8899998865           13334557787777 432110   11 111111 112 6788999999977776 4   


Q ss_pred             -------CCeEEEEeCCCCCceeeEeecCCCcccCC-cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          253 -------DLRINLWNLEISNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       253 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                             .+.|..+|..  ++....+...    .+. ...++.+.+ .++ +++++...++.|..+++...
T Consensus       252 ~~~~~~~~~~v~~~d~~--G~~~~~~~~~----~g~~~~~~~~~~~-~~g-~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          252 GNMHGRVDPKGIKFDEF--GNILEVIPLP----PPFAGEHFEQIQE-HDG-LLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             SSTTSCEEEEEEEECTT--SCEEEEEECC----TTTTTSCCCEEEE-ETT-EEEEECSSCSEEEEEEC---
T ss_pred             ccccCCCccEEEEECCC--CCEEEEEECC----CCCccccceEEEE-eCC-EEEEeecCCCceEEEecccc
Confidence                   3667788765  3444433221    111 233556666 356 67776667888999987643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.77  E-value=0.0049  Score=58.81  Aligned_cols=79  Identities=11%  Similarity=0.186  Sum_probs=49.7

Q ss_pred             ceEEEEECCCCCeEEEeec-CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363           37 IISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI  115 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  115 (408)
                      ...++++..++++++.|+. +..+.+||..+....                     .+..+....            . -
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~---------------------~~~~~~~~R------------~-~  289 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI---------------------PGPDMQVAR------------G-Y  289 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE---------------------ECCCCSSCC------------S-S
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCcee---------------------ECCCCCccc------------c-c
Confidence            3445778889999999984 458999998766431                     011111100            1 1


Q ss_pred             eEEEEeecCCCcEEEEEe-CC-----CeEEEEEcCCCcEEEE
Q 015363          116 NKIRWCQSANSALYLLST-ND-----KTIKLWKVQEKKVKKV  151 (408)
Q Consensus       116 ~~v~~~p~~~~~~l~~~~-~d-----~~i~vwd~~~~~~~~~  151 (408)
                      .+++..  ++|++++.|+ .+     ..+.+||..+++....
T Consensus       290 ~s~~~~--~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          290 QSSATM--SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             CEEEEC--TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             cceEEe--cCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence            223332  3588888888 44     5799999998876654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.72  E-value=0.0085  Score=55.98  Aligned_cols=63  Identities=16%  Similarity=0.027  Sum_probs=39.1

Q ss_pred             CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363          304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      ++.|..||+.+++..-    .+...             ..+....+...+..++.++ |+.|+.||.++ ++.+..++..
T Consensus       443 ~g~l~a~D~~tG~~~W----~~~~~-------------~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t-G~~lw~~~~~  504 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKW----TKWEK-------------FAAWGGTLYTKGGLVWYATLDGYLKALDNKD-GKELWNFKMP  504 (571)
T ss_dssp             CEEEEEECTTTCCEEE----EEEES-------------SCCCSBCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             CCeEEEEECCCCCEEE----EecCC-------------CCccceeEEECCCEEEEEcCCCeEEEEECCC-CCEEEEEeCC
Confidence            4788999998886542    22111             1111112223455566664 79999999998 7888888765


Q ss_pred             cc
Q 015363          383 EH  384 (408)
Q Consensus       383 ~~  384 (408)
                      ..
T Consensus       505 ~~  506 (571)
T 2ad6_A          505 SG  506 (571)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.72  E-value=0.016  Score=49.26  Aligned_cols=205  Identities=12%  Similarity=0.079  Sum_probs=105.7

Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      ....++|.|  +|.++++-..++.|..||..... ........                .+..+++.++|+.+       
T Consensus        33 ~pegia~~~--~g~lyv~d~~~~~I~~~d~~g~~-~~~~~~~~----------------~p~gia~~~dG~l~-------   86 (306)
T 2p4o_A           33 FLENLASAP--DGTIFVTNHEVGEIVSITPDGNQ-QIHATVEG----------------KVSGLAFTSNGDLV-------   86 (306)
T ss_dssp             CEEEEEECT--TSCEEEEETTTTEEEEECTTCCE-EEEEECSS----------------EEEEEEECTTSCEE-------
T ss_pred             CcceEEECC--CCCEEEEeCCCCeEEEECCCCce-EEEEeCCC----------------CceeEEEcCCCcEE-------
Confidence            367889954  57766666688999999887643 33222211                12267888888754       


Q ss_pred             cCccccCCCCC-c-eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          194 SNDSSFPPGGV-S-SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       194 ~~~~~~~~~~~-~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                           ++.... + .|..++ ......      ..............++..+++..+++- .++.|.++|..........
T Consensus        87 -----vad~~~~~~~v~~~d-~~~g~~------~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~  154 (306)
T 2p4o_A           87 -----ATGWNADSIPVVSLV-KSDGTV------ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWL  154 (306)
T ss_dssp             -----EEEECTTSCEEEEEE-CTTSCE------EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             -----EEeccCCcceEEEEc-CCCCeE------EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEE
Confidence                 322211 1 233333 111110      000000111223445555555555555 5888999887632111111


Q ss_pred             ee--cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC-CceecccccccccccCCCCccccccccceeEEE
Q 015363          271 VD--VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       271 ~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      ..  +..............+  +|++..++++-...++|..+++.. +...  ....+...             .....+
T Consensus       155 ~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~~~-------------~~P~gi  217 (306)
T 2p4o_A          155 EHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG--EPEIFVEQ-------------TNIDDF  217 (306)
T ss_dssp             ECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC--CCEEEEES-------------CCCSSE
T ss_pred             ECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC--ccEEEecc-------------CCCCCe
Confidence            00  0000011111234555  788734555556678999999875 3211  00111100             234668


Q ss_pred             EEccCCCEEEEeC-CCeEEEEECCCCCCc
Q 015363          348 KFARNGRHILSRD-YMTLKLWDINMDSGP  375 (408)
Q Consensus       348 ~~spdg~~l~s~~-d~~v~~wd~~~~~~~  375 (408)
                      +++++|++.++.. .+.|.++|..  ++.
T Consensus       218 ~vd~dG~l~va~~~~~~V~~~~~~--G~~  244 (306)
T 2p4o_A          218 AFDVEGNLYGATHIYNSVVRIAPD--RST  244 (306)
T ss_dssp             EEBTTCCEEEECBTTCCEEEECTT--CCE
T ss_pred             EECCCCCEEEEeCCCCeEEEECCC--CCE
Confidence            9999998766664 4899999874  454

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.72  E-value=0.018  Score=49.36  Aligned_cols=206  Identities=6%  Similarity=0.016  Sum_probs=112.4

Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE-EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      .+..+.|.+. ++.++.+-...+.|..+++..+.. ..+.....               ..+..+++.+.+..+      
T Consensus        36 ~~~~ld~d~~-~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l---------------~~p~glavd~~~g~l------   93 (318)
T 3sov_A           36 DAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL---------------LSPDGLACDWLGEKL------   93 (318)
T ss_dssp             EEEEEEEEGG-GTEEEEEETTTTEEEEEETTSSSCCCEEEEECC---------------SCCCEEEEETTTTEE------
T ss_pred             ccEEEEEEeC-CCEEEEEECCCCcEEEEEccCCCceEEEEcCCC---------------CCccEEEEEcCCCeE------
Confidence            3678899753 234444545778888888876532 11111100               111246666544443      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe---cCCeEEEEeCCCCCceee
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~  269 (408)
                           +++-...+.|.+++ +..       .....+..........++++|.+..|..+   ..+.|...+++ +.....
T Consensus        94 -----y~~d~~~~~I~~~~-~dG-------~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~  159 (318)
T 3sov_A           94 -----YWTDSETNRIEVSN-LDG-------SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFI  159 (318)
T ss_dssp             -----EEEETTTTEEEEEE-TTS-------CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEE
T ss_pred             -----EEEECCCCEEEEEE-CCC-------CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEE
Confidence                 24444556677665 222       11111112333557899999876666555   25788888887 332222


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      ++       ...-.....++++|++..++.+=+..+.|..+|+.....     +.+....           ......+++
T Consensus       160 ~~-------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-----~~~~~~~-----------~~~P~glav  216 (318)
T 3sov_A          160 II-------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-----QAVVKGS-----------LPHPFALTL  216 (318)
T ss_dssp             EE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSC-----------CSCEEEEEE
T ss_pred             EE-------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-----EEEecCC-----------CCCceEEEE
Confidence            21       122344689999997735555555678999999875332     1111100           133566777


Q ss_pred             ccCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363          350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                      .. +.++.+-. .+.|..++..+ ++..+.+.
T Consensus       217 ~~-~~lywtd~~~~~V~~~~~~~-G~~~~~i~  246 (318)
T 3sov_A          217 FE-DILYWTDWSTHSILACNKYT-GEGLREIH  246 (318)
T ss_dssp             ET-TEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred             eC-CEEEEEecCCCeEEEEECCC-CCceEEEe
Confidence            53 33344443 48999999876 45544443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.71  E-value=0.03  Score=53.42  Aligned_cols=74  Identities=14%  Similarity=0.162  Sum_probs=48.8

Q ss_pred             EEEeCCCCCEEEEe-cCC-------------------eEEEEeCCCCCceeeEeecCCCcccCCc-------CCeEEEEE
Q 015363          238 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDLT-------EVITSAEF  290 (408)
Q Consensus       238 ~i~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~  290 (408)
                      .++++|+...++.+ .++                   .|..+|.++++..... +     ...|.       .++....+
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~-~-----~~~~~~wd~~~~~~~~~~d~  307 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY-Q-----VTPGDSWDFTATQQITLAEL  307 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-E-----SSTTCCSCCCCCSCEEEEEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe-e-----cCCCccccccCCCCcEEEEe
Confidence            46788888887776 554                   4899999866655443 2     11121       22222233


Q ss_pred             cCCCCc---eEEEEeCCCeEEEEEcCCCcee
Q 015363          291 HPTHCN---MLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       291 ~p~~~~---~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      ..+| .   .++.++.+|.++++|..+++.+
T Consensus       308 ~~~G-~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          308 NIDG-KPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EETT-EEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             ccCC-cEEEEEEEECCCCEEEEEECCCCCEe
Confidence            3456 4   6888999999999999999765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.61  E-value=0.026  Score=48.29  Aligned_cols=209  Identities=9%  Similarity=0.007  Sum_probs=111.8

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCC----CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQE----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      ..+..++|.+. ++.++.+-...+.|..+++.+    ...........               ..+..+++.+.+..+  
T Consensus        30 ~~p~g~~~d~~-~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~---------------~~p~glavd~~~~~l--   91 (316)
T 1ijq_A           30 RNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---------------QAPDGLAVDWIHSNI--   91 (316)
T ss_dssp             SSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEECSSC---------------SCCCEEEEETTTTEE--
T ss_pred             CceEEEEEEeC-CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC---------------CCcCEEEEeecCCeE--
Confidence            34778999643 234445555678999999876    22222221110               111256666544443  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC-CeEEEEeCCCCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD-LRINLWNLEISN  265 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d-~~i~iwd~~~~~  265 (408)
                               +++-...+.|.+.+ ...       ...+.+..........++++|.+..|..+  .. +.|..++++ +.
T Consensus        92 ---------y~~d~~~~~I~~~~-~~g-------~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~  153 (316)
T 1ijq_A           92 ---------YWTDSVLGTVSVAD-TKG-------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GV  153 (316)
T ss_dssp             ---------EEEETTTTEEEEEE-TTS-------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred             ---------EEEECCCCEEEEEe-CCC-------CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CC
Confidence                     13434556777665 221       11111212223467899999976655554  33 788888887 33


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      ....+.       ...-.....++++|++..++++-+..+.|..+|+.....     +.+....         +......
T Consensus       154 ~~~~~~-------~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-----~~~~~~~---------~~~~~P~  212 (316)
T 1ijq_A          154 DIYSLV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-----KTILEDE---------KRLAHPF  212 (316)
T ss_dssp             CEEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEECT---------TTTSSEE
T ss_pred             CeEEEE-------ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-----EEEeecC---------CccCCcE
Confidence            222221       112345689999998735555555678999999875322     2221110         0012346


Q ss_pred             EEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363          346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       346 ~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                      .+++. .+.++++-. .+.|..++..+ ++.+..+.
T Consensus       213 giav~-~~~ly~~d~~~~~V~~~~~~~-g~~~~~i~  246 (316)
T 1ijq_A          213 SLAVF-EDKVFWTDIINEAIFSANRLT-GSDVNLLA  246 (316)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEETTT-CCCCEEEE
T ss_pred             EEEEE-CCEEEEEECCCCeEEEEeCCC-CcceEEEe
Confidence            67774 344444443 48999998765 45555543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.59  E-value=0.00096  Score=64.72  Aligned_cols=114  Identities=13%  Similarity=0.142  Sum_probs=71.8

Q ss_pred             ceEEEEeC-CCCCEEEEe-c-C----CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---
Q 015363          235 HINSISNN-SDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---  304 (408)
Q Consensus       235 ~v~~i~~~-~~~~~l~~~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---  304 (408)
                      .+...+|+ |||++||.+ + +    ..|+++|+.++...+.      ..+.   .....++|+||+ +.|+....|   
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~------~~~~---~~~~~~~WspDg-~~l~y~~~d~~~  244 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA------DKVS---GTNGEIVWGPDH-TSLFYVTKDETL  244 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC------CCEE---EECSCCEECSST-TEEEEEEECTTC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC------cccc---CceeeEEEecCC-CEEEEEEECCCC
Confidence            57788999 999998865 2 2    2599999985512110      0011   113468999999 666666654   


Q ss_pred             --CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe--C--CCeEEEEECCC
Q 015363          305 --GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D--YMTLKLWDINM  371 (408)
Q Consensus       305 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~--d~~v~~wd~~~  371 (408)
                        ..|+++++.++.....  ..+....           ......+.|||||++|+..  +  ...|.++|+.+
T Consensus       245 ~~~~v~~~~lgt~~~~~~--lv~~~~~-----------~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSEDV--CLYEEHN-----------PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CEEEEEEEETTSCGGGCE--EEEECCC-----------TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             CCCEEEEEECCCCchhcE--EEEecCC-----------CceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence              3688888876532110  1121111           1235678999999988854  2  26788899976

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.59  E-value=0.035  Score=49.24  Aligned_cols=209  Identities=8%  Similarity=0.003  Sum_probs=110.4

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc----EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      ..+..|+|.+. ++.++.+-...+.|+.+++....    ...+.....               ..+..+++.+.+..|  
T Consensus       112 ~~~~~l~~d~~-~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~---------------~~p~glavD~~~~~l--  173 (400)
T 3p5b_L          112 RNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---------------QAPDGLAVDWIHSNI--  173 (400)
T ss_dssp             SCEEEEEEETT-TTEEEEEETTTTEEEEEEC------CCCEEEECSSC---------------SCEEEEEEETTTTEE--
T ss_pred             CcceEEeeeec-cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC---------------CCcccEEEEecCCce--
Confidence            44788999653 23344444567888888886522    222221111               112246666644443  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--c-CCeEEEEeCCCCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISN  265 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~iwd~~~~~  265 (408)
                               +++-...+.|.+.+ +..       .....+........+.|+++|.+..|..+  . .+.|...+++ +.
T Consensus       174 ---------Y~~d~~~~~I~~~~-~~g-------~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~  235 (400)
T 3p5b_L          174 ---------YWTDSVLGTVSVAD-TKG-------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GV  235 (400)
T ss_dssp             ---------EEEETTTTEEEEEC-TTT-------CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SC
T ss_pred             ---------EEEECCCCeEEEEe-CCC-------CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CC
Confidence                     24444556666655 221       11122222233457899999976666655  2 4788888887 33


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      ....+       ....-.....|+++|++..++++=...+.|..+|+.....     ..+....         +......
T Consensus       236 ~~~~~-------~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-----~~~~~~~---------~~l~~P~  294 (400)
T 3p5b_L          236 DIYSL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-----KTILEDE---------KRLAHPF  294 (400)
T ss_dssp             SCEEE-------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-----EEEEECS---------STTSSEE
T ss_pred             ccEEE-------EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-----EEEEeCC---------CCCCCCE
Confidence            32222       1222345789999988734445545578999999875432     1221110         0012345


Q ss_pred             EEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363          346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       346 ~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                      .+++. .+.++++-. .+.|..+|..+ ++.+..+.
T Consensus       295 gl~v~-~~~lywtd~~~~~V~~~~~~~-G~~~~~i~  328 (400)
T 3p5b_L          295 SLAVF-EDKVFWTDIINEAIFSANRLT-GSDVNLLA  328 (400)
T ss_dssp             EEEEE-TTEEEEEESSSCSEEEEESSS-CCCCEEEE
T ss_pred             EEEEe-CCEEEEecCCCCeEEEEEcCC-CCceEEEe
Confidence            66663 333444444 48898888665 55555544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.58  E-value=0.05  Score=52.73  Aligned_cols=114  Identities=8%  Similarity=-0.015  Sum_probs=74.2

Q ss_pred             cceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC-CeEEEE
Q 015363          234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLI  310 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g~i~iw  310 (408)
                      .....|++++.++.|..+  ..+.|.+.++. +.....++       .........|+++|.+..++.+-... +.|...
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l~-------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~  542 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  542 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEEE-------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence            456688999887666655  68899999998 43333221       22234478999999862444443333 789888


Q ss_pred             EcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC--CCeEEEEECCC
Q 015363          311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINM  371 (408)
Q Consensus       311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~  371 (408)
                      ++.....     ..+....           ......|++++.+..|+.++  .+.|...+++.
T Consensus       543 ~~dG~~~-----~~lv~~~-----------l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          543 GLNGVDI-----YSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             ETTSCCE-----EEEECSS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ecCCCce-----EEEEeCC-----------CCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence            8875432     1221111           14578999998877777763  37899999863

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.55  E-value=0.033  Score=47.86  Aligned_cols=117  Identities=7%  Similarity=0.092  Sum_probs=68.5

Q ss_pred             ccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363          233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  312 (408)
Q Consensus       233 ~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  312 (408)
                      ...+..+++.+++.+++.+.+|.+++.+.+ .+.....+..  ..+ .....+..+.+.+++ .+++++ .++.| ++..
T Consensus       204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D-~G~tW~~~~~--~~~-~~~~~~~~v~~~~~~-~~~~~g-~~g~i-~~S~  276 (327)
T 2xbg_A          204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPD-NSENWGELLS--PLR-RNSVGFLDLAYRTPN-EVWLAG-GAGAL-LCSQ  276 (327)
T ss_dssp             SSCEEEEEECTTSCEEEEETTTEEEEEETT-EEEEECCCBC--TTS-SCCSCEEEEEESSSS-CEEEEE-STTCE-EEES
T ss_pred             CCccceeEECCCCCEEEEeCCceEEEecCC-CCCeeEeccC--Ccc-cCCcceEEEEecCCC-EEEEEe-CCCeE-EEeC
Confidence            456788999999988877778888776433 2332222110  001 122357899999887 666665 46766 3444


Q ss_pred             CCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEEC
Q 015363          313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI  369 (408)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~  369 (408)
                      ..++.-    ..+....         .+...+.++.|.+++++++.|.+|.|.-++-
T Consensus       277 DgG~tW----~~~~~~~---------~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          277 DGGQTW----QQDVDVK---------KVPSNFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             STTSSC----EECGGGT---------TSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             CCCccc----EEcCccC---------CCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence            444221    1111110         0013567888887777777888888776654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.54  E-value=0.042  Score=48.75  Aligned_cols=188  Identities=5%  Similarity=-0.032  Sum_probs=107.4

Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCcee
Q 015363          128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL  207 (408)
Q Consensus       128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  207 (408)
                      +|+.+ ....|+..++.......+.....         .+       ..++|.+....+           +++-...+.|
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~---------~~-------~~l~~d~~~~~l-----------ywsD~~~~~I  136 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIPNLR---------NV-------VALDTEVASNRI-----------YWSDLSQRMI  136 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEECSCS---------CE-------EEEEEETTTTEE-----------EEEETTTTEE
T ss_pred             eeEEe-ccceeEEEccCCcceeEeccccC---------cc-------eEEeeeeccCce-----------EEEecCCCeE
Confidence            44444 34688888888766554433211         12       268888766655           2444455667


Q ss_pred             eeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCe
Q 015363          208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI  285 (408)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  285 (408)
                      ..++ +.....   ......+..........+++++.+..|..+  ..+.|.+.+++ +.....++       .......
T Consensus       137 ~~~~-~~g~~~---~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~-g~~~~~l~-------~~~~~~P  204 (400)
T 3p5b_L          137 CSTQ-LDRAHG---VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKP  204 (400)
T ss_dssp             EEEE-C---------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT-TCSEEEEE-------ECSSCCE
T ss_pred             EEEE-cccCCC---CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC-CCceEEEE-------eCCCCCc
Confidence            6666 322110   000111112233457789999855555544  68899999988 33333221       2223446


Q ss_pred             EEEEEcCCCCceEEEEeC-CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC--CC
Q 015363          286 TSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YM  362 (408)
Q Consensus       286 ~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~--d~  362 (408)
                      ..|+++|.+..++.+-.. .+.|...++.....     ..+....           ......|+++|++..|+.++  .+
T Consensus       205 ~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-----~~~~~~~-----------l~~P~glavd~~~~~lY~aD~~~~  268 (400)
T 3p5b_L          205 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKLH  268 (400)
T ss_dssp             EEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-----EEEECSS-----------CSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-----EEEEECC-----------CCceEEEEEEeCCCEEEEEECCCC
Confidence            899999976244444323 37888888875432     1111110           14578999999888888773  38


Q ss_pred             eEEEEECCC
Q 015363          363 TLKLWDINM  371 (408)
Q Consensus       363 ~v~~wd~~~  371 (408)
                      .|..+|++.
T Consensus       269 ~I~~~d~dG  277 (400)
T 3p5b_L          269 SISSIDVNG  277 (400)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEEeCCC
Confidence            999999863

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.42  E-value=0.1  Score=50.55  Aligned_cols=208  Identities=8%  Similarity=0.010  Sum_probs=112.7

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc----EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      ..+..|+|.+. ++.++++-...+.|+.+++....    ...++....               ..+..+++.+.++.|  
T Consensus       424 ~~~~gl~~d~~-~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l---------------~~P~GLAvD~~~~~L--  485 (791)
T 3m0c_C          424 RNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---------------QAPDGLAVDWIHSNI--  485 (791)
T ss_dssp             SSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEECSSC---------------SCCCEEEEETTTTEE--
T ss_pred             CceEEEeeccc-CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC---------------CCcceeeeeecCCcE--
Confidence            34778888643 34445555567788888887531    122222111               112256777666554  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--c-CCeEEEEeCCCCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISN  265 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~iwd~~~~~  265 (408)
                               +++-...+.|.+.+ +..       ...+.+........+.|+++|.+..|..+  . .+.|...++. +.
T Consensus       486 ---------Y~tD~~~~~I~v~~-ldG-------~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~  547 (791)
T 3m0c_C          486 ---------YWTDSVLGTVSVAD-TKG-------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GV  547 (791)
T ss_dssp             ---------EEEETTTTEEEEEE-TTS-------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred             ---------EEEecCCCeEEEEe-CCC-------CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CC
Confidence                     24445566777666 322       11222222333457899999986666655  3 3788888887 33


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      ....++       ...-.....|++++.+.+++++=.....|...++......    ..+.....          .....
T Consensus       548 ~~~~lv-------~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~----~v~~~~~~----------l~~P~  606 (791)
T 3m0c_C          548 DIYSLV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK----TILEDEKR----------LAHPF  606 (791)
T ss_dssp             CEEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----EEEECTTT----------TSSEE
T ss_pred             ceEEEE-------eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE----EEecCCCc----------cCCCC
Confidence            333321       2223567899999877355555455678999998754321    11111100          11234


Q ss_pred             EEEEccCCCEEEEe-CC-CeEEEEECCCCCCceeeee
Q 015363          346 DIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       346 ~~~~spdg~~l~s~-~d-~~v~~wd~~~~~~~~~~~~  380 (408)
                      .|++.  +.+|+.+ .. +.|...|..+ ++.+..+.
T Consensus       607 glav~--~~~lYwtD~~~~~I~~~dk~t-G~~~~~l~  640 (791)
T 3m0c_C          607 SLAVF--EDKVFWTDIINEAIFSANRLT-GSDVNLLA  640 (791)
T ss_dssp             EEEEE--TTEEEEEETTTTEEEEEETTT-CCCCEEEE
T ss_pred             EEEEe--CCEEEEEECCCCEEEEEeCCC-CcceEEee
Confidence            56664  3455555 33 8888888765 55555543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.38  E-value=0.083  Score=49.46  Aligned_cols=32  Identities=16%  Similarity=0.135  Sum_probs=24.3

Q ss_pred             CCCEEEEeC-CCeEEEEECCCCCCceeeeeeccc
Q 015363          352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       352 dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      .+.+|+.++ |+.++.||.++ |+.+-.++....
T Consensus       483 agg~vf~gt~dg~l~A~D~~t-G~~lW~~~l~~g  515 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDT-GDLLWKFKIPSG  515 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSC
T ss_pred             cCCEEEEECCCCeEEEEECCC-CCEEEEeeCCCC
Confidence            455666664 79999999998 788888765544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.37  E-value=0.078  Score=48.02  Aligned_cols=165  Identities=10%  Similarity=0.060  Sum_probs=88.7

Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEE-------ccCCCee
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY-------MANGGCG  186 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~l  186 (408)
                      ....|+|.|..++.++++....+.|++.|+.++.+..........     .       ..+..+++       .++|..+
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~-----~-------~~p~~ia~~~~~~~~d~~G~~l  207 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP-----T-------NRIRSIAFNKKIEGYADEAEYM  207 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS-----C-------SBEEEEEECCCBTTTBCTTCEE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc-----c-------CCCcEEEEeecccccCCCCCEE
Confidence            356788865222445555455578999999988877665432100     0       12226888       8888855


Q ss_pred             ecccccccCccccCCCCCc-----e--eeeceeeecccccccc-ccceeeccccccceEEEEeCCCC-CEEEEe-cCCeE
Q 015363          187 ERNFGCASNDSSFPPGGVS-----S--LRLPVVVTSQETNLVA-GCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRI  256 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~-----~--i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i  256 (408)
                                  +.+...+     .  |.+.+  ...+..... ...+.+ .. ......++++|++ .++++- .++.|
T Consensus       208 ------------yvad~~~~~~~~~~~V~~i~--r~~~G~~~~~~~~~~v-~~-~~~p~giavdp~~g~LYvtd~~~g~V  271 (496)
T 3kya_A          208 ------------IVAIDYDGKGDESPSVYIIK--RNADGTFDDRSDIQLI-AA-YKQCNGATIHPINGELYFNSYEKGQV  271 (496)
T ss_dssp             ------------EEEECCCTTGGGEEEEEEEE--CCTTSCCSTTSCEEEE-EE-ESCCCCEEECTTTCCEEEEETTTTEE
T ss_pred             ------------EEEeCCCCCcccCceEEEEe--cCCCCceeecccceee-cc-CCCceEEEEcCCCCeEEEEECCCCEE
Confidence                        3322221     2  33322  111111110 000111 11 1334577899955 555555 78899


Q ss_pred             EEEeCC-------CCCc-----------eeeEeecCCCcccCCcCCeEEEEEcCCCCc-eEEEEeCCCeEEEEEcC
Q 015363          257 NLWNLE-------ISNQ-----------SFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       257 ~iwd~~-------~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~  313 (408)
                      ..+|+.       +...           .-.++.     . ......+.|+|+|++ . ++++-+...+|+.++..
T Consensus       272 ~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~-----~-~~~~~p~~ia~~p~G-~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          272 FRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT-----I-ADPSWEFQIFIHPTG-KYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             EEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE-----C-SSSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEE
T ss_pred             EEEecccccccccCceeecccccccccccceeEe-----c-CCCCCceEEEEcCCC-CEEEEEeCCCCEEEEEecC
Confidence            999987       3322           001111     1 123445799999999 6 45555567899996654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.35  E-value=0.0021  Score=61.58  Aligned_cols=207  Identities=9%  Similarity=-0.026  Sum_probs=104.7

Q ss_pred             ceeEEEEeecCCCcEEEEE-eCCCeEEEEEcCCC----cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          114 KINKIRWCQSANSALYLLS-TNDKTIKLWKVQEK----KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~-~~d~~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      .+..|+|.+.  +..|+.+ ...+.|+.+++.+.    ....+....               ...+..+++.+.+..|  
T Consensus       407 ~p~gla~d~~--~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~---------------~~~P~glavD~~~g~L--  467 (699)
T 1n7d_A          407 NVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------------IQAPDGLAVDWIHSNI--  467 (699)
T ss_dssp             TCCCCEEETT--TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC---------------C--CCCEECCCSSSBC--
T ss_pred             ceEEEccccc--cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC---------------CCCcceEEEEeeCCcE--
Confidence            4677888643  3345444 45678888887751    111111000               0111245555443333  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--c-CCeEEEEeCCCCC
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISN  265 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~iwd~~~~~  265 (408)
                               +++-...+.|.+.+ +...       ....+........+.|+++|.+..|+.+  . .+.|..+++.. .
T Consensus       468 ---------Y~tD~~~~~I~v~d-~dg~-------~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~  529 (699)
T 1n7d_A          468 ---------YWTDSVLGTVSVAD-TKGV-------KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-V  529 (699)
T ss_dssp             ---------EECCTTTSCEEEEB-SSSC-------CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-C
T ss_pred             ---------EEEeccCCeEEEEe-cCCC-------ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-C
Confidence                     24444556677665 2221       1111112222345788999976555554  3 37888887762 2


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      ....+       ....-.....|+|+|++..++++-...+.|..+++.....     +.+.....         ......
T Consensus       530 ~~~~l-------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-----~~~~~~~~---------~~~~P~  588 (699)
T 1n7d_A          530 DIYSL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-----KTILEDEK---------RLAHPF  588 (699)
T ss_dssp             CCCEE-------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-----EEECCCSS---------SCSSCC
T ss_pred             CeeEE-------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-----EEEEecCC---------cCCCce
Confidence            22111       1112234568999998746666666678999999875322     11111000         001233


Q ss_pred             EEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363          346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       346 ~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                      .|++..+ .++++.. .+.|..++..+ ++.++.+.
T Consensus       589 glavd~~-~lywtd~~~~~V~~~d~~~-G~~~~~i~  622 (699)
T 1n7d_A          589 SLAVFED-KVFWTDIINEAIFSANRLT-GSDVNLLA  622 (699)
T ss_dssp             CCEEETT-EEEEECSTTTCEEEEETTT-EEEEECCC
T ss_pred             EeEEECC-EEEEEeCCCCeEEEEEccC-CCceEEee
Confidence            4555443 3333433 48999998765 55555543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.32  E-value=0.059  Score=46.62  Aligned_cols=73  Identities=10%  Similarity=0.102  Sum_probs=44.5

Q ss_pred             CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc-CCCEEEEeC-
Q 015363          283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-  360 (408)
Q Consensus       283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-dg~~l~s~~-  360 (408)
                      ...+.++|+||+..++++-+..++|..|++.....+ ...+.+..             .+..-.+++.+ +|++.+++. 
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l-~~~~~~~~-------------~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL-TPLRVLSF-------------DTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE-EEEEEEEC-------------SSEEEEEEECTTTCCEEEEEES
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE-ecCEEEeC-------------CCCCceEEEeCCCCcEEEEecC
Confidence            345889999999344444456789999998743211 11122211             14567889999 599877663 


Q ss_pred             C-CeEEEEEC
Q 015363          361 Y-MTLKLWDI  369 (408)
Q Consensus       361 d-~~v~~wd~  369 (408)
                      + +.|..|+-
T Consensus       287 ~g~~v~~~~P  296 (355)
T 3sre_A          287 NGMRIFFYDA  296 (355)
T ss_dssp             CHHHHHSCCT
T ss_pred             CceEEEEECC
Confidence            4 44444443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.30  E-value=0.099  Score=48.89  Aligned_cols=64  Identities=17%  Similarity=0.163  Sum_probs=40.1

Q ss_pred             CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363          304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      +|.|..||+.+++..-    ......             .+..-.....+.+++.++ |+.++.||.++ |+.+-.++..
T Consensus       465 ~G~l~A~D~~tG~~~W----~~~~~~-------------~~~~g~~~tagglvf~g~~dg~l~A~D~~t-G~~lW~~~~~  526 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVW----EHKEHL-------------PLWAGVLATAGNLVFTGTGDGYFKAFDAKS-GKELWKFQTG  526 (582)
T ss_dssp             SEEEEEECTTTCCEEE----EEEESS-------------CCCSCCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             cceEEEEECCCCCEEE----EecCCC-------------CCcccceEeCCCEEEEECCCCcEEEEECCC-CCEEEEecCC
Confidence            5789999999987542    111110             111111112355666675 79999999998 7988888775


Q ss_pred             ccc
Q 015363          383 EHL  385 (408)
Q Consensus       383 ~~~  385 (408)
                      ...
T Consensus       527 ~g~  529 (582)
T 1flg_A          527 SGI  529 (582)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.28  E-value=0.07  Score=45.59  Aligned_cols=203  Identities=13%  Similarity=0.027  Sum_probs=113.6

Q ss_pred             ccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           35 VDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        35 ~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      ...+.+++|++. +.++.+-...+.|..++.++....                      ...+...-            .
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~----------------------~~~~~~~l------------~   79 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------------------QNVVVSGL------------L   79 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC----------------------CEEEEECC------------S
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce----------------------EEEEcCCC------------C
Confidence            345678999986 444455456678888887655210                      00111111            2


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      ....+++.+. ++.++++-...+.|.+.++.............               ..+..++..|.+..+       
T Consensus        80 ~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~---------------~~P~giavdp~~g~l-------  136 (318)
T 3sov_A           80 SPDGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------------DQPRAIALDPSSGFM-------  136 (318)
T ss_dssp             CCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------------SSEEEEEEEGGGTEE-------
T ss_pred             CccEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCC---------------CCccEEEEeCCCCEE-------
Confidence            2556777432 34455555567889999987654333322111               112257777765554       


Q ss_pred             cCccccCCC--CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceee
Q 015363          194 SNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       194 ~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~  269 (408)
                           +...  ..+.|...+ ...       .....+....-...+.++++|++..|..+  ..+.|..+|++ +.....
T Consensus       137 -----y~td~~~~~~I~r~~-~dG-------~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~  202 (318)
T 3sov_A          137 -----YWTDWGEVPKIERAG-MDG-------SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQA  202 (318)
T ss_dssp             -----EEEECSSSCEEEEEE-TTS-------CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEE
T ss_pred             -----EEEecCCCCEEEEEE-cCC-------CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC-CCceEE
Confidence                 2222  234555544 211       11111112222456899999987777766  67899999987 332222


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCce
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL  317 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  317 (408)
                      ++       .........+++..+  .++.+-...+.|..++..+++.
T Consensus       203 ~~-------~~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          203 VV-------KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EE-------CSCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCCS
T ss_pred             Ee-------cCCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCCc
Confidence            21       222344567777643  5666766778999999877754

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.25  E-value=0.0064  Score=58.29  Aligned_cols=209  Identities=9%  Similarity=-0.010  Sum_probs=108.3

Q ss_pred             cceEEEEECCCCCeEEEee-cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           36 DIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        36 ~~V~~~~~s~~~~~l~sg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ..+..|+|++.+..|+... ..+.|+.+++.+.... ..                  ....+....            ..
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~-~~------------------~~~~i~~~~------------~~  454 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SS------------------YDTVISRDI------------QA  454 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC--CC------------------CCCBCCSCC--------------
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCC-cc------------------eEEEEeCCC------------CC
Confidence            4566888988766555543 4578888887652100 00                  000010000            12


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      ...|++.+. .+.++++-...+.|.+.++.......+......               .+..+++.|.+..|        
T Consensus       455 P~glavD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~---------------~P~giavDp~~g~l--------  510 (699)
T 1n7d_A          455 PDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGS---------------KPRAIVVDPVHGFM--------  510 (699)
T ss_dssp             CCCEECCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSC---------------CCCCEECCSSSSCC--------
T ss_pred             cceEEEEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCC---------------CcceEEEccCCCcE--------
Confidence            445666322 244555545678899999886654444322111               11256777765554        


Q ss_pred             CccccCCCC-CceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEe
Q 015363          195 NDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       195 ~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~  271 (408)
                         +++-.. .+.|..++ +....       .+.+....-...+.|+|+|++..|..+  ..+.|..+++. +.....++
T Consensus       511 ---y~td~~~~~~I~~~~-~dG~~-------~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d-G~~~~~~~  578 (699)
T 1n7d_A          511 ---YWTDWGTPAKIKKGG-LNGVD-------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTIL  578 (699)
T ss_dssp             ---EECCCSSSCCEEBCC-SSSCC-------CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS-SSCCEEEC
T ss_pred             ---EEcccCCCCeEEEEe-CCCCC-------eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC-CCceEEEE
Confidence               122212 25565544 22111       111111122446789999987666655  67899999997 33322221


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      .     ..........|++..+  .++++....+.|..++..+++..
T Consensus       579 ~-----~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~  618 (699)
T 1n7d_A          579 E-----DEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDV  618 (699)
T ss_dssp             C-----CSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEE
T ss_pred             e-----cCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCce
Confidence            1     1111122345566544  56666667789999998777544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.24  E-value=0.11  Score=47.04  Aligned_cols=178  Identities=9%  Similarity=0.012  Sum_probs=92.1

Q ss_pred             eeeEEccCCCeeecccccccCccccCCCCCceeeeceeee-------cccc-cc--ccc--cc-eeeccccccceEEEEe
Q 015363          175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVT-------SQET-NL--VAG--CR-RIYAHAHDYHINSISN  241 (408)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~-~~--~~~--~~-~~~~~~~~~~v~~i~~  241 (408)
                      ..++.+|++..|           +++-..++.|..+| +.       .... ..  ...  .. ..+........+.|+|
T Consensus       250 ~giavdp~~g~L-----------Yvtd~~~g~V~r~d-~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~  317 (496)
T 3kya_A          250 NGATIHPINGEL-----------YFNSYEKGQVFRLD-LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFI  317 (496)
T ss_dssp             CCEEECTTTCCE-----------EEEETTTTEEEEEC-HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEE
T ss_pred             eEEEEcCCCCeE-----------EEEECCCCEEEEEe-cccccccccCceeecccccccccccceeEecCCCCCceEEEE
Confidence            367788855554           25566777788888 43       1111 00  000  00 1111222345678999


Q ss_pred             CCCCCEEEEe--cCCeEEEEeCCCCCcee----eEeec-CCCcc------cCCcCCeE-EEEEc-------CCCCceEEE
Q 015363          242 NSDGETFISA--DDLRINLWNLEISNQSF----NIVDV-KPANM------EDLTEVIT-SAEFH-------PTHCNMLAY  300 (408)
Q Consensus       242 ~~~~~~l~~~--~d~~i~iwd~~~~~~~~----~~~~~-~~~~~------~~~~~~v~-~~~~~-------p~~~~~l~s  300 (408)
                      +|+++.|..+  ....|+.++.......+    .+... ....+      ...-.... .+...       +++ .++++
T Consensus       318 ~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVa  396 (496)
T 3kya_A          318 HPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFV  396 (496)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEE
T ss_pred             cCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEE
Confidence            9999966655  67889987765222111    11110 00000      00112234 45554       456 67777


Q ss_pred             EeCCCeEEEEEcCCCceecccccccccccCC---------CCc---cccccccceeEEEEEccC-CCEEEEeC-CCeEEE
Q 015363          301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAP---------GTR---SFFTEIIASISDIKFARN-GRHILSRD-YMTLKL  366 (408)
Q Consensus       301 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~h~~~i~~~~~spd-g~~l~s~~-d~~v~~  366 (408)
                      =....+|+.++ ..+..     .++.+....         ...   ......-.....|+++++ |.+.++=. ...|+.
T Consensus       397 D~~N~rIr~i~-~~G~v-----~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrk  470 (496)
T 3kya_A          397 DRLNFCVRKVT-PEGIV-----STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRT  470 (496)
T ss_dssp             EGGGTEEEEEC-TTCBE-----EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ECCCCEEEEEe-CCCCE-----EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence            67788999998 44532     333322100         000   000111235788999997 65555544 489999


Q ss_pred             EECCC
Q 015363          367 WDINM  371 (408)
Q Consensus       367 wd~~~  371 (408)
                      +++..
T Consensus       471 i~~~~  475 (496)
T 3kya_A          471 ISMEQ  475 (496)
T ss_dssp             EEECC
T ss_pred             EECCC
Confidence            99975

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.19  E-value=0.097  Score=45.50  Aligned_cols=65  Identities=12%  Similarity=0.174  Sum_probs=39.7

Q ss_pred             CCeEEEEEc-------CCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCE
Q 015363          283 EVITSAEFH-------PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH  355 (408)
Q Consensus       283 ~~v~~~~~~-------p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~  355 (408)
                      .....+.|.       .+| .++++.-..+.|...++............+.+.            ...+.++++.|||.+
T Consensus       259 ~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~------------~~rp~~v~~~pDG~l  325 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV------------FGRLRDVVIDDDGGI  325 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTTT------------SCCEEEEEECTTSCE
T ss_pred             cCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccCC------------CCCeeEEEECCCCcE
Confidence            346788883       566 777776667888888887532110000111111            246899999999987


Q ss_pred             EEEeC
Q 015363          356 ILSRD  360 (408)
Q Consensus       356 l~s~~  360 (408)
                      .++..
T Consensus       326 yv~~~  330 (354)
T 3a9g_A          326 LISTS  330 (354)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            76653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.13  E-value=0.28  Score=49.75  Aligned_cols=33  Identities=6%  Similarity=-0.006  Sum_probs=27.4

Q ss_pred             ccceEEEEECCC------CCeEEEeec-CCeEEEEEeCCC
Q 015363           35 VDIISAIEFDKS------GDHLATGDR-GGRVVLFERTDT   67 (408)
Q Consensus        35 ~~~V~~~~~s~~------~~~l~sg~~-dg~i~iw~~~~~   67 (408)
                      .+.|.|+++.|.      ++++|.|.. |++|+|+++.+.
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l  592 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF  592 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence            467999999863      469999996 999999998754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.05  E-value=0.13  Score=44.58  Aligned_cols=73  Identities=8%  Similarity=0.202  Sum_probs=43.1

Q ss_pred             CCeEEEEEcC-------CCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCE
Q 015363          283 EVITSAEFHP-------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH  355 (408)
Q Consensus       283 ~~v~~~~~~p-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~  355 (408)
                      ..+..+.|.+       ++ .++++.-..+.|...++..++.... ...+.            .....+..+++.|||.+
T Consensus       271 ~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~-~~~~~------------~~~~rp~~v~~~pdG~l  336 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTED-GRILT------------DRGQRIRDVRTGPDGYL  336 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEE-EEESG------------GGCCCEEEEEECTTSCE
T ss_pred             cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeee-EEccc------------CCCCceeEEEECCCCcE
Confidence            3467788764       45 6777766778888888775432210 01111            11247899999999997


Q ss_pred             EEEeCCCeEEEEEC
Q 015363          356 ILSRDYMTLKLWDI  369 (408)
Q Consensus       356 l~s~~d~~v~~wd~  369 (408)
                      .++.+...=+||.+
T Consensus       337 yv~td~~~g~I~ri  350 (353)
T 2g8s_A          337 YVLTDESSGELLKV  350 (353)
T ss_dssp             EEEECSTTEEEEEE
T ss_pred             EEEEeCCCCEEEEE
Confidence            76654222244444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.92  E-value=0.16  Score=43.49  Aligned_cols=151  Identities=11%  Similarity=0.046  Sum_probs=82.6

Q ss_pred             ccceEEEEeCCCCCEEEEecCCeEEE-EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 015363          233 DYHINSISNNSDGETFISADDLRINL-WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  311 (408)
Q Consensus       233 ~~~v~~i~~~~~~~~l~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  311 (408)
                      ...+..+++.+++.+++.+.++.+.. .|-  .+...+.+.      ......+..+.+.+++ .+++ ++.+|.+++.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~------~~~~~~~~~~~~~~~g-~~~~-~~~~G~~~~s~  231 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN------RTTSRRLHNMGFTPDG-RLWM-IVNGGKIAFSD  231 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE------CCSSSCEEEEEECTTS-CEEE-EETTTEEEEEE
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC------CCCCCccceeEECCCC-CEEE-EeCCceEEEec
Confidence            35688899999999888885555433 332  122222221      1234567889999998 6554 45678887764


Q ss_pred             cCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeec---ccccce
Q 015363          312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVH---EHLRPK  388 (408)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~---~~~~~~  388 (408)
                      ...++.-    ..+.....        .+...+.++.+.+++.+++++.++.| ++..+. ++....+...   ......
T Consensus       232 ~D~G~tW----~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~Dg-G~tW~~~~~~~~~~~~~~~  297 (327)
T 2xbg_A          232 PDNSENW----GELLSPLR--------RNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDG-GQTWQQDVDVKKVPSNFYK  297 (327)
T ss_dssp             TTEEEEE----CCCBCTTS--------SCCSCEEEEEESSSSCEEEEESTTCE-EEESST-TSSCEECGGGTTSSSCCCE
T ss_pred             CCCCCee----EeccCCcc--------cCCcceEEEEecCCCEEEEEeCCCeE-EEeCCC-CcccEEcCccCCCCCCeEE
Confidence            3323211    11110000        00135788999998998888888777 444543 5555554422   112223


Q ss_pred             EEecCCCeeeeeeceeeec
Q 015363          389 VMHSSKNYFMGLDNIHTLY  407 (408)
Q Consensus       389 ~~~~~~~~~~~~d~~~~~~  407 (408)
                      +...-.+.++++....++|
T Consensus       298 v~~~~~~~~~~~G~~G~i~  316 (327)
T 2xbg_A          298 ILFFSPDQGFILGQKGILL  316 (327)
T ss_dssp             EEEEETTEEEEECSTTEEE
T ss_pred             EEEECCCceEEEcCCceEE
Confidence            3222344455554444443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.88  E-value=0.31  Score=45.98  Aligned_cols=185  Identities=10%  Similarity=0.029  Sum_probs=107.0

Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCcee
Q 015363          128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL  207 (408)
Q Consensus       128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  207 (408)
                      +|+.+ ....|+..++.+...........-              ..+..+++.+....+           +++-..++.|
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~--------------~~~~~l~~d~~~~~l-----------ywtD~~~~~I   61 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGV--------------KEASALDFDVTDNRI-----------YWTDISLKTI   61 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSC--------------SCEEEEEEETTTTEE-----------EEEETTTTEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCC--------------CceEEEEEECCCCEE-----------EEEECCCCeE
Confidence            44444 566888889887654333222110              112267888876665           2444456666


Q ss_pred             eeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCe
Q 015363          208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI  285 (408)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  285 (408)
                      ..++ +....       ...+..........+++++.+..|..+  ..+.|.+.+++ +.....++       ...-...
T Consensus        62 ~r~~-~~g~~-------~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~~~~l~-------~~~l~~P  125 (628)
T 4a0p_A           62 SRAF-MNGSA-------LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQHRQVLV-------WKDLDSP  125 (628)
T ss_dssp             EEEE-TTSCS-------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-STTCEEEE-------CSSCCCE
T ss_pred             EEEE-CCCCC-------cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC-CCcEEEEE-------eCCCCCc
Confidence            6655 22211       111112122346688888776666555  67899999997 33222221       1223446


Q ss_pred             EEEEEcCCCCceEEEE-eCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC--CC
Q 015363          286 TSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YM  362 (408)
Q Consensus       286 ~~~~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~--d~  362 (408)
                      ..|+++|....++.+- +..+.|...++.....     ..+...            ......+++++++..|+.++  .+
T Consensus       126 ~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-----~~l~~~------------~~~P~GlalD~~~~~LY~aD~~~~  188 (628)
T 4a0p_A          126 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-----TTLVPN------------VGRANGLTIDYAKRRLYWTDLDTN  188 (628)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EEEECS------------CSSEEEEEEETTTTEEEEEETTTT
T ss_pred             ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-----EEEECC------------CCCcceEEEccccCEEEEEECCCC
Confidence            8999999652444443 2256888888765432     111111            14578999999888888773  38


Q ss_pred             eEEEEECCC
Q 015363          363 TLKLWDINM  371 (408)
Q Consensus       363 ~v~~wd~~~  371 (408)
                      .|...|++.
T Consensus       189 ~I~~~d~dG  197 (628)
T 4a0p_A          189 LIESSNMLG  197 (628)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEEcCCC
Confidence            999999964

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.86  E-value=0.2  Score=43.46  Aligned_cols=62  Identities=3%  Similarity=-0.019  Sum_probs=36.6

Q ss_pred             CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceec--ccccccccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363          284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD--THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  359 (408)
Q Consensus       284 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~  359 (408)
                      ....++| .+| .++++.-..+.|...++.......  .....+...            ...+.++++.|||.+.++.
T Consensus       269 ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~------------~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          269 PPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG------------FGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             CEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES------------SCCEEEEEECTTSCEEEEE
T ss_pred             CCcceEE-ECC-EEEEEECCCCEEEEEEECCCCcceeecchheeccc------------CCCeeEEEECCCCcEEEEE
Confidence            4567777 466 676666667778877776432100  000111111            2468999999999877765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.84  E-value=0.13  Score=44.44  Aligned_cols=145  Identities=8%  Similarity=0.145  Sum_probs=80.0

Q ss_pred             CCCceeeeceeeeccccccccccceee---ccccccceEEEEeCC--CCC--EEEEe-c--CCeEEEEeCCCCCceeeEe
Q 015363          202 GGVSSLRLPVVVTSQETNLVAGCRRIY---AHAHDYHINSISNNS--DGE--TFISA-D--DLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       202 ~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~~~--~~~--~l~~~-~--d~~i~iwd~~~~~~~~~~~  271 (408)
                      ..+|.|.++| ........  ..+...   ..........+.+.+  ++.  ++++- .  +.+|.+|+++........+
T Consensus        80 ~~~G~I~~~d-~~~~~~~~--~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~  156 (355)
T 3sre_A           80 DKSGKILLMD-LNEKEPAV--SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHL  156 (355)
T ss_dssp             --CCEEEEEE-TTSSSCCE--EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEE
T ss_pred             CCCCeEEEEe-cCCCCCce--EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEE
Confidence            3678888888 43211111  111110   011234566777655  453  44443 3  6789999887544433332


Q ss_pred             ecCCCcccC-CcCCeEEEEEcCCCCceEEEEeC-----------------CCeEEEEEcCCCceecccccccccccCCCC
Q 015363          272 DVKPANMED-LTEVITSAEFHPTHCNMLAYSSS-----------------KGSIRLIDMRQSALCDTHSKLFEEQEAPGT  333 (408)
Q Consensus       272 ~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  333 (408)
                      .    ++.+ .-...+.+.+.++| .++++...                 .|.|..+|.  ++ +    ..+...     
T Consensus       157 ~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~----~~~~~~-----  219 (355)
T 3sre_A          157 K----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-V----RVVAEG-----  219 (355)
T ss_dssp             E----EECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-C----EEEEEE-----
T ss_pred             e----ccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-E----EEeecC-----
Confidence            1    1221 12457899999999 77766541                 244554544  21 1    111111     


Q ss_pred             ccccccccceeEEEEEccCCCEEEEeC--CCeEEEEECCCCC
Q 015363          334 RSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDS  373 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~~~  373 (408)
                             ....+.++||||++.|+.++  .+.|..|+++.++
T Consensus       220 -------l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g  254 (355)
T 3sre_A          220 -------FDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  254 (355)
T ss_dssp             -------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             -------CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC
Confidence                   13568999999999888873  3899999997533

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.83  E-value=0.19  Score=42.71  Aligned_cols=182  Identities=10%  Similarity=0.089  Sum_probs=96.9

Q ss_pred             eeEEEEeecCCCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEE---ccCCCeeeccc
Q 015363          115 INKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY---MANGGCGERNF  190 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~l~~~~  190 (408)
                      --+++|.+. ++ .|..++ ..++|..|+...+....+ ....-.  ...+.....     ..+.+   .|+++.+....
T Consensus        15 PE~~~wd~~-~g-~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s--~~g~~~~~~-----sGl~~~~~D~~grL~vv~~   84 (334)
T 2p9w_A           15 PEDTIYDRT-RQ-VFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS--SNGDGEQQM-----SGLSLLTHDNSKRLFAVMK   84 (334)
T ss_dssp             CSCEEEETT-TT-EEEEEETTTTEEEEECTTTCCEEEE-CCTTTC--CSSCCSEEE-----EEEEESSSSSCCEEEEEEE
T ss_pred             CcCccCcCC-CC-EEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc--ccCCCccee-----eEEEEeccCCCCcEEEEEc
Confidence            457889643 34 555555 799999999986655444 221100  000111111     15677   46766653211


Q ss_pred             ccccCccccCC---CCCceeeeceeee---ccccccccccceeeccc-------cccceEEEEeCCCCCEEEEe-cC-Ce
Q 015363          191 GCASNDSSFPP---GGVSSLRLPVVVT---SQETNLVAGCRRIYAHA-------HDYHINSISNNSDGETFISA-DD-LR  255 (408)
Q Consensus       191 ~~~~~~~~~~~---~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~-~d-~~  255 (408)
                        ....+-..+   +.+..|..|| +.   ..+....... .....+       -......++..++|+..+++ .. +.
T Consensus        85 --~~~af~~~g~~~~g~~~v~~~D-l~~~~tg~~~~~~dL-~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~  160 (334)
T 2p9w_A           85 --NAKSFNFADQSSHGASSFHSFN-LPLSENSKPVWSVNF-EKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA  160 (334)
T ss_dssp             --ETTTTCTTSCCSSSCCEEEEEE-SSCCTTCCCSEEEES-HHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE
T ss_pred             --ccccccccccccCCCCEEEEEc-CCcCCCCCEEEEecC-ccccccccccccccccCCceeEECCCCCEEEeCCCCCCe
Confidence              000111111   2356677777 44   1111100000 000000       11358899999999999987 66 77


Q ss_pred             EEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 015363          256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  314 (408)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  314 (408)
                      |...+.. +. .......... ........+.|+++|++ ++|++...++.|..+|++.
T Consensus       161 I~rV~pd-G~-~~~~~~~~~~-~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          161 IARVSAD-GK-TVSTFAWESG-NGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEECTT-SC-CEEEEEECCC-CSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSS
T ss_pred             EEEEeCC-CC-EEeeeeecCC-CcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCC
Confidence            7777766 33 2222111110 11123346789999999 7777776699999999984

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.75  E-value=0.11  Score=48.53  Aligned_cols=57  Identities=7%  Similarity=0.017  Sum_probs=36.2

Q ss_pred             cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      .++.|..||+.+++...+.- ..   .......   +..  .+ .+++.++.|+.++.||.++++.+
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~-~~---~~~~~g~---~~t--ag-glvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHK-EH---LPLWAGV---LAT--AG-NLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEE-ES---SCCCSCC---EEE--TT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             CcceEEEEECCCCCEEEEec-CC---CCCcccc---eEe--CC-CEEEEECCCCcEEEEECCCCCEE
Confidence            36889999998666554431 10   1111111   111  24 56777999999999999999765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.74  E-value=0.041  Score=48.25  Aligned_cols=125  Identities=11%  Similarity=0.182  Sum_probs=78.1

Q ss_pred             ceEEEEeCCCCCEEEEecCCeEEEEeCCCCCc-----------eeeEeecCCCcccCCcCCeEEEEEcCCCC--ceEEEE
Q 015363          235 HINSISNNSDGETFISADDLRINLWNLEISNQ-----------SFNIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYS  301 (408)
Q Consensus       235 ~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~s~  301 (408)
                      .+..+..+|+|++||...+..|.|-.+..+..           ....+.+.+.+ ......|..+.|+|-+.  ..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence            46678999999999998778999988873211           11223332211 11357799999999763  378888


Q ss_pred             eCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE--eCC-CeEEE
Q 015363          302 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS--RDY-MTLKL  366 (408)
Q Consensus       302 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s--~~d-~~v~~  366 (408)
                      ..|+.|++||+.....  .|. .+....   ...-+......|.+++|.+++-.|..  .++ |.|+-
T Consensus       146 tsD~~Ir~yDl~~s~~--~P~-~L~k~~---~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          146 KEDDTITMFDILNSQE--KPI-VLNKPN---NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             ETTSCEEEEETTCTTS--CCE-EESCCC---SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             ecCCEEEEEEcccCCC--CCc-chhccc---cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            9999999999987321  222 222110   00011122356889999998765555  333 66654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.62  E-value=0.28  Score=42.01  Aligned_cols=109  Identities=13%  Similarity=0.132  Sum_probs=66.3

Q ss_pred             ccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC----ceeeEee
Q 015363          198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN----QSFNIVD  272 (408)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~----~~~~~~~  272 (408)
                      ++....++.+..|++..........+.++.+..  ...+..+...+....|..+ ++..|..++.+...    ..+..+.
T Consensus       146 afV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~  223 (355)
T 3amr_A          146 AMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD  223 (355)
T ss_dssp             EEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS
T ss_pred             EEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec
Confidence            377788899999994333344344555555522  3467788889888888888 77667666754221    1222210


Q ss_pred             cCCCcccCCcCCeEEEEE--cCCCC-ceEEEEeCCCeEEEEEcC
Q 015363          273 VKPANMEDLTEVITSAEF--HPTHC-NMLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~--~p~~~-~~l~s~~~dg~i~iwd~~  313 (408)
                           ...-...+..|++  .+++. .+|+++-.+.+..+||..
T Consensus       224 -----~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          224 -----GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             -----SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             -----CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence                 1112235777777  55553 344444467899999997

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.56  E-value=0.12  Score=43.91  Aligned_cols=123  Identities=11%  Similarity=0.131  Sum_probs=78.5

Q ss_pred             ceEEEEe---CCCCCEEEEec--------------CCeEEEEeCC---CCCceeeEeecCCCcccC-------CcCCeEE
Q 015363          235 HINSISN---NSDGETFISAD--------------DLRINLWNLE---ISNQSFNIVDVKPANMED-------LTEVITS  287 (408)
Q Consensus       235 ~v~~i~~---~~~~~~l~~~~--------------d~~i~iwd~~---~~~~~~~~~~~~~~~~~~-------~~~~v~~  287 (408)
                      .+..|.|   .|+++++++..              +..|..||+.   +++.... +++... ..+       .......
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~-~dL~~~-~~~~~~~~g~~~~~~nD  141 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWS-VNFEKV-QDEFEKKAGKRPFGVVQ  141 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE-EESHHH-HHHHHHHHSSCCEEEEE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEE-ecCccc-cccccccccccccCCce
Confidence            4578999   68888887542              5779999988   4444332 221100 000       1124789


Q ss_pred             EEEcCCCCceEEEEeCC-CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEE
Q 015363          288 AEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLK  365 (408)
Q Consensus       288 ~~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~  365 (408)
                      ++..++| +..++++.. +.|...+......     ..+.... +     ........+.|+++|+|+.|++.. .+.+.
T Consensus       142 vavD~~G-naYVt~s~~~~~I~rV~pdG~~~-----~~~~~~~-~-----~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~  209 (334)
T 2p9w_A          142 SAQDRDG-NSYVAFALGMPAIARVSADGKTV-----STFAWES-G-----NGGQRPGYSGITFDPHSNKLIAFGGPRALT  209 (334)
T ss_dssp             EEECTTS-CEEEEEEESSCEEEEECTTSCCE-----EEEEECC-C-----CSSSCCSCSEEEEETTTTEEEEESSSSSEE
T ss_pred             eEECCCC-CEEEeCCCCCCeEEEEeCCCCEE-----eeeeecC-C-----CcccccCcceEEEeCCCCEEEEEcCCCeEE
Confidence            9999999 888888888 8887777664322     1111110 0     000013467899999999888874 69999


Q ss_pred             EEECCC
Q 015363          366 LWDINM  371 (408)
Q Consensus       366 ~wd~~~  371 (408)
                      -+|++.
T Consensus       210 ~fD~~~  215 (334)
T 2p9w_A          210 AFDVSK  215 (334)
T ss_dssp             EEECSS
T ss_pred             EEcCCC
Confidence            999874

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.50  E-value=0.35  Score=41.63  Aligned_cols=33  Identities=9%  Similarity=0.083  Sum_probs=24.9

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCC
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDT   67 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~   67 (408)
                      -...+.|+|.|+|+++++-...|.|++++..++
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g   63 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG   63 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence            345689999999997766654899998875443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.40  E-value=0.66  Score=43.70  Aligned_cols=203  Identities=8%  Similarity=0.036  Sum_probs=107.6

Q ss_pred             cceeEEEEeecCCCcEEEEE-eCCCeEEEEEcCCCcE-EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          113 EKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~-~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      ..+..|+|.+.  +..|..+ ...+.|..+++..... ..+.....               ..+..+++.+.+..+    
T Consensus        40 ~~~~~ld~~~~--~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~---------------~~P~GlAvD~~~~~l----   98 (619)
T 3s94_A           40 EDAAAVDFVFS--HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL---------------LSPDGLACDWLGEKL----   98 (619)
T ss_dssp             SCEEEEEEETT--TTEEEEEETTTTEEEEEEC-----CEEEECSSC---------------SCEEEEEEETTTTEE----
T ss_pred             CceEEEEEEeC--CCEEEEEECCCCeEEEEEccCCCceEEEEeCCC---------------CCcCeEEEEecCCEE----
Confidence            34778899653  3345444 4567888888875532 22221110               112257777765554    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe---cCCeEEEEeCCCCCce
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQS  267 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~d~~i~iwd~~~~~~~  267 (408)
                             +++-...+.|.+.+ +..       ...+.+....-...+.|+++|.+..|..+   ..+.|...+++ +...
T Consensus        99 -------y~~d~~~~~I~v~~-~dG-------~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~  162 (619)
T 3s94_A           99 -------YWTDSETNRIEVSN-LDG-------SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSR  162 (619)
T ss_dssp             -------EEEETTTTEEEEEE-TTS-------CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSC
T ss_pred             -------EEEeCCCCEEEEEE-CCC-------CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCce
Confidence                   24445567777666 222       11112222233456789999976555544   25677777776 3333


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      ..++       ...-.....|++++++.+++++=...+.|...|+......    ....+.            ......+
T Consensus       163 ~~l~-------~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~----~~~~~~------------~~~P~gi  219 (619)
T 3s94_A          163 FIII-------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ----AVVKGS------------LPHPFAL  219 (619)
T ss_dssp             EEEE-------CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------------------CCCE
T ss_pred             EEEE-------eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE----EEEeCC------------CCCceEE
Confidence            2221       1223456899999976355555556788999998754321    111111            0123456


Q ss_pred             EEccCCCEEEEeC--CCeEEEEECCCCCCceee
Q 015363          348 KFARNGRHILSRD--YMTLKLWDINMDSGPVAT  378 (408)
Q Consensus       348 ~~spdg~~l~s~~--d~~v~~wd~~~~~~~~~~  378 (408)
                      ++..+  .|+.++  .+.|...|..+ ++....
T Consensus       220 ~~~~~--~ly~td~~~~~V~~~d~~t-g~~~~~  249 (619)
T 3s94_A          220 TLFED--ILYWTDWSTHSILACNKYT-GEGLRE  249 (619)
T ss_dssp             EESSS--EEEEECTTTCSEEEEESSS-CCCCEE
T ss_pred             EEeCC--EEEEecCCCCEEEEEECCC-CcccEE
Confidence            66654  555553  48898888876 444333

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.34  E-value=0.19  Score=43.54  Aligned_cols=114  Identities=14%  Similarity=0.104  Sum_probs=63.3

Q ss_pred             cceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC---CCceEEEEeCC-----C
Q 015363          234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSK-----G  305 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~~d-----g  305 (408)
                      .....++|.|+|+++++-.++.|.+++ . .. ...+..+.  ...........|+++|+   +..++++-..+     .
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~-~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR-E-GR-LSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE-T-TE-EEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE-C-CC-ccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            346789999999977776669999998 3 22 21121111  12222456789999998   42555554433     6


Q ss_pred             eEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363          306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  359 (408)
Q Consensus       306 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~  359 (408)
                      .|..++...+... .....+......    .-..|  ....++|.|||.+.++-
T Consensus       106 ~v~r~~~~~~~~~-~~~~l~~~~p~~----~~~~h--~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          106 QVVRLRHLGERGV-LDRVVLDGIPAR----PHGLH--SGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEEECSSCEE-EEEEEEEEECCC----TTCCC--CCCCEEECTTSCEEEEC
T ss_pred             EEEEEEeCCCCcC-ceEEEEEeCCCC----CCCCc--CCceEEECCCCCEEEEE
Confidence            7888887643211 000111111000    00112  23579999999876664

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.33  E-value=0.73  Score=43.47  Aligned_cols=204  Identities=7%  Similarity=0.025  Sum_probs=114.8

Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      .+..|+|.+. ++..+.+-..++.|..+++.......+......               .+..+++.+.+..|       
T Consensus        38 ~~~~l~~d~~-~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~---------------~P~GlAvD~~~~~L-------   94 (628)
T 4a0p_A           38 EASALDFDVT-DNRIYWTDISLKTISRAFMNGSALEHVVEFGLD---------------YPEGMAVDWLGKNL-------   94 (628)
T ss_dssp             CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCS---------------CCCEEEEETTTTEE-------
T ss_pred             ceEEEEEECC-CCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC---------------CcceEEEEeCCCEE-------
Confidence            4778999653 234444555788999998876654444332111               11246666555544       


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe---cCCeEEEEeCCCCCceeeE
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~  270 (408)
                          +++-...+.|.+.+ +...       ..+.+....-...+.|+++|....|..+   ..+.|...+++ +.....+
T Consensus        95 ----Y~tD~~~~~I~v~~-~dG~-------~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d-G~~~~~l  161 (628)
T 4a0p_A           95 ----YWADTGTNRIEVSK-LDGQ-------HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-GSERTTL  161 (628)
T ss_dssp             ----EEEETTTTEEEEEE-TTST-------TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEE
T ss_pred             ----EEEECCCCEEEEEe-cCCC-------cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC-CCceEEE
Confidence                24444456666655 2221       1112212233457899999965555554   26788888887 3332222


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                      +       . .-.....|++++++.+++.+=...+.|..+|+.....     +.+...            ......+++.
T Consensus       162 ~-------~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-----~v~~~~------------l~~P~glav~  216 (628)
T 4a0p_A          162 V-------P-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-----EVIADD------------LPHPFGLTQY  216 (628)
T ss_dssp             E-------C-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEEC------------CSCEEEEEEE
T ss_pred             E-------C-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-----EEeecc------------CCCceEEEEE
Confidence            1       1 2345789999998735555555678999999876432     122111            1234567776


Q ss_pred             cCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363          351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                      . +.+.++-. .+.|...|..+ ++....+.
T Consensus       217 ~-~~ly~tD~~~~~I~~~dk~t-g~~~~~l~  245 (628)
T 4a0p_A          217 Q-DYIYWTDWSRRSIERANKTS-GQNRTIIQ  245 (628)
T ss_dssp             T-TEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred             C-CEEEEecCCCCEEEEEECCC-CCceEEEe
Confidence            4 33334443 48999998766 45444443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.29  E-value=0.76  Score=43.25  Aligned_cols=202  Identities=13%  Similarity=0.042  Sum_probs=106.2

Q ss_pred             ccceEEEEECCCCCeEEEee-cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      ...+..|+|++.+..|+.+. ..+.|..+++++....                      ...+....            .
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~----------------------~~v~~~~~------------~   84 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------------------QNVVVSGL------------L   84 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C----------------------EEEECSSC------------S
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce----------------------EEEEeCCC------------C
Confidence            44577899998766555544 4577888887654210                      01111111            3


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      ....+++.+. ++.++.+-...+.|.+.++.............               ..+..+++.|.+..+       
T Consensus        85 ~P~GlAvD~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l---------------~~P~~Iavdp~~g~l-------  141 (619)
T 3s94_A           85 SPDGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------------DQPRAIALDPSSGFM-------  141 (619)
T ss_dssp             CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------------SCCCCEEEETTTTEE-------
T ss_pred             CcCeEEEEec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC---------------CCCceEEEecCCCeE-------
Confidence            3677888432 34455555677899999998765444332211               112257777765554       


Q ss_pred             cCccccCCC--CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceee
Q 015363          194 SNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       194 ~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~  269 (408)
                           +...  ..+.|...+ +   ++    .....+....-...+.|++++++..|..+  ..+.|..+|++ +.....
T Consensus       142 -----y~tD~g~~~~I~r~~-~---dG----~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G~~~~~  207 (619)
T 3s94_A          142 -----YWTDWGEVPKIERAG-M---DG----SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQA  207 (619)
T ss_dssp             -----EEEECSSSCEEEEEE-T---TS----CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-CCEEC-
T ss_pred             -----EEeccCCCCEEEEEE-C---CC----CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-CCccEE
Confidence                 2222  123343322 1   11    11111112223567899999987777766  57889999887 333222


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA  316 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  316 (408)
                      +.       .+.......|++..+  .++.+-...+.|...|..+++
T Consensus       208 ~~-------~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          208 VV-------KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             ---------------CCCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred             EE-------eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence            21       111112245666544  455555556788888877664

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.28  E-value=0.73  Score=42.94  Aligned_cols=29  Identities=3%  Similarity=0.016  Sum_probs=24.1

Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEecc
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDW  154 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  154 (408)
                      +..+++++.|+.+..+|..+++.......
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~  143 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEV  143 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecC
Confidence            34788888999999999999988776654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.22  E-value=0.5  Score=40.50  Aligned_cols=209  Identities=9%  Similarity=0.117  Sum_probs=109.5

Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc----CCCeeecccccccCcc-ccC
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA----NGGCGERNFGCASNDS-SFP  200 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~-~~~  200 (408)
                      .++++....++-+.+||+ +++.+..+...          .+.       .+..-|    .|+.+         ++ +++
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g----------~~n-------nVD~r~~~~l~g~~~---------dla~as   92 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNTG----------KLN-------NVDIRYDFPLNGKKV---------DIAAAS   92 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECCS----------CEE-------EEEEEEEEEETTEEE---------EEEEEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccCC----------Ccc-------cEEEecccccCCceE---------eEEEEe
Confidence            457777778889999999 66666655321          111       122222    22211         11 233


Q ss_pred             CCC--Cceeeeceeeeccc--cccccccceeeccccccceEEEEe--CCC-CC-EEEEe-cCCeEEEEeCCCC--C-cee
Q 015363          201 PGG--VSSLRLPVVVTSQE--TNLVAGCRRIYAHAHDYHINSISN--NSD-GE-TFISA-DDLRINLWNLEIS--N-QSF  268 (408)
Q Consensus       201 ~~~--~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~--~~~-~~-~l~~~-~d~~i~iwd~~~~--~-~~~  268 (408)
                      ...  ++.|.+|+ +....  ........... ......+..+++  +|. +. ++++. .+|.+..|++...  + ...
T Consensus        93 ~R~~~~n~l~vf~-iDp~~~~l~~i~~~~~pv-~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~  170 (355)
T 3amr_A           93 NRSEGKNTIEIYA-IDGKNGTLQSMTDPDHPI-ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISG  170 (355)
T ss_dssp             ECSTTCCEEEEEE-ECTTTCCEEECSCTTSCE-ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEE
T ss_pred             CCCCCCCeEEEEE-ECCCCCceeeccccccCc-CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccc
Confidence            334  57888887 42211  11111100000 011144566777  775 44 34445 7899999988421  1 111


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee-cccccccc-cccCCCCccccccccceeEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC-DTHSKLFE-EQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~h~~~i~~  346 (408)
                      +.+.    ++. ..+.+-.+...+.. ..|+.+-++.-|..++.+..... .+.+..+. ++           ....+..
T Consensus       171 ~lVR----~f~-lgsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~-----------l~aDvEG  233 (355)
T 3amr_A          171 KKVR----AFK-MNSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH-----------LTRDIEG  233 (355)
T ss_dssp             EEEE----EEE-CSSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS-----------BCSCEEE
T ss_pred             eEEE----Eec-CCCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCc-----------cccCcce
Confidence            1111    122 13467888999887 78888888876777775522100 00011111 11           1235777


Q ss_pred             EEE--ccCCC-EEEEe--CCCeEEEEECCCCCCceeeee
Q 015363          347 IKF--ARNGR-HILSR--DYMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       347 ~~~--spdg~-~l~s~--~d~~v~~wd~~~~~~~~~~~~  380 (408)
                      |++  .++++ +|+++  .++++.+||.....+.+..|.
T Consensus       234 Lai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          234 LTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            877  45555 55554  358999999973356777775

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.98  E-value=0.26  Score=42.72  Aligned_cols=113  Identities=12%  Similarity=0.068  Sum_probs=62.6

Q ss_pred             cceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC---CCceEEEEeC---C---
Q 015363          234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS---K---  304 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~~---d---  304 (408)
                      .....++|.|+|+++++-.++.|+++|.. + . ..+..+.  ...........|+++|+   +..++++-+.   +   
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G-~-~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-G-K-KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECSS-C-E-EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-C-c-eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            45678999999987777666999999743 3 2 2221111  11222355789999997   3155555442   3   


Q ss_pred             -CeEEEEEcCCCc-eecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363          305 -GSIRLIDMRQSA-LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  359 (408)
Q Consensus       305 -g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~  359 (408)
                       ..|..|+..... ........+.....      -..|  ....++|.|||.+.++-
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~------~~~h--~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPG------AYIH--NGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEEC------CSSC--CCCCEEECTTSCEEEEC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCC------CCCc--CCceEEECCCCcEEEEE
Confidence             577778776441 00000001111000      0112  24678999999877764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.93  E-value=0.33  Score=42.69  Aligned_cols=118  Identities=12%  Similarity=0.135  Sum_probs=74.0

Q ss_pred             EeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccC--CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCce
Q 015363          240 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL  317 (408)
Q Consensus       240 ~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  317 (408)
                      ....++.-++.+.++.||.-++.. +..++.+..     +.  ....+..+..+|+| .+||..+ +..|.|-.+..+..
T Consensus        27 ~~~~n~t~i~~a~~n~iR~~~i~~-~~~Yk~L~~-----~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~   98 (452)
T 3pbp_A           27 FSSQNGTRIVFIQDNIIRWYNVLT-DSLYHSLNF-----SRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYS   98 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEETTT-CSSCEEEEC-----TTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCS
T ss_pred             EEEcCCCEEEEEECCEEEEEECCC-CCcceEEec-----CcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccc
Confidence            345677788888779999988873 334554432     21  12246789999999 8888775 66899988884421


Q ss_pred             ecc------ccc--ccccccCCCCccccccccceeEEEEEccC---CCEEEEe-CCCeEEEEECCC
Q 015363          318 CDT------HSK--LFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSR-DYMTLKLWDINM  371 (408)
Q Consensus       318 ~~~------~~~--~~~~~~~~~~~~~~~~h~~~i~~~~~spd---g~~l~s~-~d~~v~~wd~~~  371 (408)
                      ...      +++  .+.-...      -.....+|..+.|+|-   +..|++- +|+.|++||+..
T Consensus        99 ~~~~~~~~~~~q~~ty~l~~~------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A           99 NVEDVSIQDAFQIFHYSIDEE------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             CCCCHHHHHTTEEEEEEGGGC------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cCcccccccccceeEEEcCCc------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            100      001  1111100      0002367999999993   4456654 789999999985

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.52  E-value=0.69  Score=36.65  Aligned_cols=65  Identities=9%  Similarity=0.017  Sum_probs=36.3

Q ss_pred             cceEEEEeCCCCCEEEEecCCeEEEEeCCCCCce-----eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEE
Q 015363          234 YHINSISNNSDGETFISADDLRINLWNLEISNQS-----FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR  308 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  308 (408)
                      ..+..|.+.|+|.+.+.. |+.+.-.........     ...+      -...-...+.+.|.|++ .++++.  ++.+.
T Consensus       135 ~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~------g~~g~~~yr~l~f~~~G-~l~~v~--~g~~Y  204 (236)
T 1tl2_A          135 SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKI------GQGGWDTFKFLFFSSVG-TLFGVQ--GGKFY  204 (236)
T ss_dssp             GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEE------ESSSGGGEEEEEECTTS-CEEEEE--TTEEE
T ss_pred             CceEEEEECCCceEEEEe-CCcEEecCCCCCCCccccccccee------ccCCcceEEEEEECCCC-cEEEEe--CCeEE
Confidence            457889999999999888 777543222211100     0000      11222334567799998 666554  77443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.37  E-value=0.86  Score=39.46  Aligned_cols=79  Identities=11%  Similarity=0.097  Sum_probs=45.7

Q ss_pred             cceEEEEeCCCCC-EEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC---CCceEEEEeC------
Q 015363          234 YHINSISNNSDGE-TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS------  303 (408)
Q Consensus       234 ~~v~~i~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~~------  303 (408)
                      .....|+|.|+|+ ++++-..+.|++++.. +.....+..+ +............|+++|+   +..++++-+.      
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~-~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGV-PDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSC-CCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCC-cccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            4567899999999 7766677999999854 2211111111 0011122345789999995   3155555433      


Q ss_pred             -CCeEEEEEcCC
Q 015363          304 -KGSIRLIDMRQ  314 (408)
Q Consensus       304 -dg~i~iwd~~~  314 (408)
                       ...|..|++..
T Consensus        96 ~~~~v~r~~~~~  107 (353)
T 2g8s_A           96 AGTAVGYGRLSD  107 (353)
T ss_dssp             EEEEEEEEEECT
T ss_pred             ceeEEEEEEECC
Confidence             23566676653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.89  E-value=0.76  Score=41.37  Aligned_cols=117  Identities=11%  Similarity=0.098  Sum_probs=63.4

Q ss_pred             cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcc--cCCcCCeEEEEEcCC---CCceEEEEeC----
Q 015363          234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM--EDLTEVITSAEFHPT---HCNMLAYSSS----  303 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~---~~~~l~s~~~----  303 (408)
                      .....++|.|+|+++++- ..+.|++++... +....+..+.. .+  ......+..|+|+|+   +..+.++-+.    
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~-~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPE-IVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTT-CCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcEeEEecCCc-cccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            456799999999988887 445788887652 22222222211 11  113456789999995   3155554432    


Q ss_pred             --------CCeEEEEEcCCCc-eecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC
Q 015363          304 --------KGSIRLIDMRQSA-LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD  360 (408)
Q Consensus       304 --------dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~  360 (408)
                              ...|..++..... .+......+.....      -..|  ....|+|.|||.+.++..
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------~~~H--~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------SKDH--QSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------CSSC--CEEEEEECTTSCEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------CCCC--CCCeEeECCCCeEEEEEC
Confidence                    2356666654321 11000011111100      0112  468899999998777643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.87  E-value=0.2  Score=39.73  Aligned_cols=115  Identities=12%  Similarity=0.031  Sum_probs=64.1

Q ss_pred             ceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcc--cCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363          235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  312 (408)
Q Consensus       235 ~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  312 (408)
                      .+..++|+|+|.+.++ .+|.+.-.+..+.... .-+.. ...+  .+-.. ...+.|.|+| .+.++  .||.|+-++-
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~-~W~~s-~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND-NWMGR-AKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-CHHHH-CEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEESC
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCcc-ccccc-ccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeCC
Confidence            5679999999998777 7787666665421110 00000 0000  01111 3678999999 66666  5799988875


Q ss_pred             CCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEE
Q 015363          313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL  366 (408)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~  366 (408)
                      .+...     ..+....    ..+-.+--..+..|.|.|+|.+-+.. |+.++-
T Consensus       115 P~~~~-----~~Wl~~a----~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr  158 (236)
T 1tl2_A          115 PQSDT-----DNWIARA----TEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK  158 (236)
T ss_dssp             CCSTT-----CCHHHHS----EEEECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred             CcCCC-----Cceeccc----cEeccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence            33211     1110000    00000001357999999999988888 877543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.82  E-value=1.7  Score=37.31  Aligned_cols=115  Identities=13%  Similarity=0.121  Sum_probs=64.8

Q ss_pred             cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC----CCceEEEEe--CCCe
Q 015363          234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT----HCNMLAYSS--SKGS  306 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~~--~dg~  306 (408)
                      .....|+|.|+|+++++- ..|.|++++.... ....+..+ +............|+++|+    + .++++-+  .+..
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g-~~~~v~~~-~~v~~~g~~GllGia~~Pdf~~~g-~lYv~yt~~~~~~  108 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTG-RKTELGEV-PGVSPSGEGGLLGIALSPDYASDH-MVYAYFTSASDNR  108 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEEC-TTCCCBTTBSEEEEEECTTHHHHC-EEEEEEECSSSEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCC-cEeeeccc-CceeecCCCCceeeEeccccccCC-EEEEEEecCCCCE
Confidence            457799999999988888 5999999986532 22222111 1112233566889999995    4 4444322  3556


Q ss_pred             EEEEEcCCCc----eecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363          307 IRLIDMRQSA----LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  359 (408)
Q Consensus       307 i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~  359 (408)
                      |.-|.+..+.    ........+.....      -..|  .-..|.|.|||.+.++.
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~------~~~H--~g~~l~fgpDG~Lyvt~  157 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPK------GVIH--NGGRIAFGPDKMLYAGT  157 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECC------CSSC--CCCCEEECTTSCEEEEC
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCC------CCCc--cCccccCCCCCCEEEEE
Confidence            6667665421    11000011111100      0122  24578999999877763

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.76  E-value=1.8  Score=38.95  Aligned_cols=119  Identities=13%  Similarity=0.105  Sum_probs=62.1

Q ss_pred             cceEEEEeCCCCC--EEEEecCCeEEEEeCCCCCceeeEeecCCCccc----CCcCCeEEEEEcCC----CCceEEEEeC
Q 015363          234 YHINSISNNSDGE--TFISADDLRINLWNLEISNQSFNIVDVKPANME----DLTEVITSAEFHPT----HCNMLAYSSS  303 (408)
Q Consensus       234 ~~v~~i~~~~~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~p~----~~~~l~s~~~  303 (408)
                      .....|+|.|++.  +|++-..|.|++++.........+..+......    .....+..|+|+|+    + .++++-+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEEeC
Confidence            4467899999985  666668899999976422111111122111111    12456889999997    4 44444332


Q ss_pred             C------------CeEEEEEcCCC--ceec--ccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCC
Q 015363          304 K------------GSIRLIDMRQS--ALCD--THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY  361 (408)
Q Consensus       304 d------------g~i~iwd~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d  361 (408)
                      +            ..|.-|.+..+  ...+  .....+....      ....|  .-..|+|.|||.+.++..|
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~------~~~~H--~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE------LHRKH--LGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE------SSSSS--CEEEEEECTTSCEEEEECC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC------CCCcc--cCCcEeECCCCcEEEEeCC
Confidence            1            14555665432  1100  0001111110      01234  3578999999987776544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=93.48  E-value=5  Score=37.54  Aligned_cols=78  Identities=12%  Similarity=0.190  Sum_probs=45.0

Q ss_pred             EEeCCCCCEEEEe-cC----------------CeEEEEeCCCCCceeeEeecCCCc---ccCCcCCeEEEEEc-CCCC--
Q 015363          239 ISNNSDGETFISA-DD----------------LRINLWNLEISNQSFNIVDVKPAN---MEDLTEVITSAEFH-PTHC--  295 (408)
Q Consensus       239 i~~~~~~~~l~~~-~d----------------~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~-p~~~--  295 (408)
                      +++.+...++..+ .+                +.|..+|.++++..... +..+..   +.....++. +... .+|.  
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~-q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY-QKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE-ESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe-ecCCCccccccCCCccEE-EeccccCCcEE
Confidence            4555666677666 43                47889999866554432 211100   001112221 2222 4552  


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcee
Q 015363          296 NMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       296 ~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      .+++.++.+|.+.++|.++++.+
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEEEECCCcEEEEEECCCCCEe
Confidence            35777889999999999999765

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.25  E-value=3.3  Score=34.81  Aligned_cols=106  Identities=10%  Similarity=0.097  Sum_probs=58.9

Q ss_pred             EEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC--CeEEEEEcCC
Q 015363          239 ISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQ  314 (408)
Q Consensus       239 i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--g~i~iwd~~~  314 (408)
                      .+++++++.|.-.  ....|...++. +.....+       +.   +... ..+.|++ .+|+-...+  ..|..-++..
T Consensus       150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~-g~~~~~l-------~~---~~~~-~~~~P~g-~~iy~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          150 FTCNTSDRYFYYNNPKNGQLYRYDTA-SQSEALF-------YD---CNCY-KPVVLDD-TNVYYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             CCSEEETTEEEEECTTTCCEEEEETT-TTEEEEE-------EC---SCEE-EEEEEET-TEEEEEEGGGTTEEEEECSSS
T ss_pred             eEeeEECCEEEEEeCCCceEEEEECC-CCCEEEE-------eC---CCcc-ceeeecC-CEEEEEEcCCCcEEEEEECCC
Confidence            4567888888765  36778888877 3333222       11   1122 3456888 666655443  3566666665


Q ss_pred             CceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCC---CeEEEEECCCCCCceeeee
Q 015363          315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d---~~v~~wd~~~~~~~~~~~~  380 (408)
                      ...     ..+...              .+  ..|+|++.+|+-+++   ..|..-++  +|...+.+.
T Consensus       217 ~~~-----~~Lt~~--------------~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~--DG~~r~~l~  262 (302)
T 3s25_A          217 PNP-----VVLTEA--------------NI--EHYNVYGSLIFYQRGGDNPALCVVKN--DGTGFKELA  262 (302)
T ss_dssp             CCC-----EECSCS--------------CE--EEEEEETTEEEEEECSSSCEEEEEET--TSCCCEEEE
T ss_pred             CCe-----EEEeCC--------------Cc--ceEEECCCEEEEEECCCCcEEEEEEC--CCCccEEee
Confidence            532     222211              23  348889999886632   45555555  455545544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.99  E-value=13  Score=38.55  Aligned_cols=227  Identities=9%  Similarity=0.138  Sum_probs=117.4

Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (408)
                      ...+|.- ...++.|+|+++.........+..-       ..|        -|.+++.--               --.+.
T Consensus        77 ~~iiALr-ag~~lQiFnl~~k~klks~~~~e~V-------vfW--------kWis~~~l~---------------lVT~~  125 (1630)
T 1xi4_A           77 SKVIALK-AGKTLQIFNIEMKSKMKAHTMTDDV-------TFW--------KWISLNTVA---------------LVTDN  125 (1630)
T ss_pred             cceEEEe-cCCeEEEeehHHhhhhcccccCCCc-------eEE--------EecCCCeeE---------------EEcCC
Confidence            3344443 3789999999988776665554321       011        122232221               13456


Q ss_pred             eeeeceeeeccccccccccceeecccc----ccceEEEEeCCCCCEEEE-e-------cCCeEEEEeCCCCCceeeEeec
Q 015363          206 SLRLPVVVTSQETNLVAGCRRIYAHAH----DYHINSISNNSDGETFIS-A-------DDLRINLWNLEISNQSFNIVDV  273 (408)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~-~-------~d~~i~iwd~~~~~~~~~~~~~  273 (408)
                      .|..|+ +.+     ...+.+.+ ..|    ...|..-..+++.++++. |       -.|.+.+|+.+...  .+    
T Consensus       126 aVyHW~-~~~-----~s~P~k~f-dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--sQ----  192 (1630)
T 1xi4_A          126 AVYHWS-MEG-----ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQ----  192 (1630)
T ss_pred             eEEEec-cCC-----CCccHHHH-hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc--ch----
Confidence            788888 533     11222222 222    356777788899988774 3       24778888887322  22    


Q ss_pred             CCCcccCCcCCeEEEEEc--CCCCceEEEEeC---CCeEEEEEcCCCceecccccccccccCCCCccccc--cccceeEE
Q 015363          274 KPANMEDLTEVITSAEFH--PTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT--EIIASISD  346 (408)
Q Consensus       274 ~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~  346 (408)
                         .+.+|......+...  +....+++.+..   .+.++|-++.....- .  ..+....   ...+|.  ....-..+
T Consensus       193 ---~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~-~--~~f~kk~---~~~~~~~~~~~Dfpv~  263 (1630)
T 1xi4_A          193 ---PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG-N--QPFPKKA---VDVFFPPEAQNDFPVA  263 (1630)
T ss_pred             ---hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccC-C--CCCcccc---ccccCCcccccCcceE
Confidence               256666554444432  222234444433   268999888543000 0  0110000   000010  11233456


Q ss_pred             EEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEe-cCCCeeeeeeceeee
Q 015363          347 IKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMH-SSKNYFMGLDNIHTL  406 (408)
Q Consensus       347 ~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~  406 (408)
                      +..|+.-..+..- ..|.|.++|+.+ +.++..-+-........+. ...+.++++.|.+.+
T Consensus       264 ~~vs~k~g~iy~itk~G~~~~~d~~t-~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~v  324 (1630)
T 1xi4_A          264 MQISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  324 (1630)
T ss_pred             EEeccccCEEEEEecCceEEEEeccc-chhhhhccccCCceEEeccCCCCCceEEEcCCceE
Confidence            7778765555554 459999999998 6776655544443333332 123446666655443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=91.83  E-value=4.8  Score=33.82  Aligned_cols=63  Identities=8%  Similarity=0.111  Sum_probs=35.3

Q ss_pred             EeCCCCCEEEEec---C--CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CCeEEEEEcC
Q 015363          240 SNNSDGETFISAD---D--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR  313 (408)
Q Consensus       240 ~~~~~~~~l~~~~---d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~  313 (408)
                      .|+++++.|+-..   +  ..|...++. +.....+        ..+..    .+++|++ +.|+-.+. ...|..-++.
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~l--------t~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~  175 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKI--------KNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTA  175 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEE--------ESSCC----CCSEEET-TEEEEECTTTCCEEEEETT
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEE--------eCCCc----eEeeEEC-CEEEEEeCCCceEEEEECC
Confidence            5677888777542   3  345555555 2222222        22221    4577888 55555444 6788888877


Q ss_pred             CCc
Q 015363          314 QSA  316 (408)
Q Consensus       314 ~~~  316 (408)
                      .+.
T Consensus       176 g~~  178 (302)
T 3s25_A          176 SQS  178 (302)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.94  E-value=2.3  Score=38.94  Aligned_cols=79  Identities=16%  Similarity=0.166  Sum_probs=52.7

Q ss_pred             ceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceee--EeecC---CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeE
Q 015363          235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFN--IVDVK---PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  307 (408)
Q Consensus       235 ~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~--~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  307 (408)
                      ....+.++|||++++.+  -+.++.++|++.-...+.  +++.+   ..... -.......+|.++| ....+---|..|
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSqv  401 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQV  401 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecceE
Confidence            34568899999999886  699999999984211100  00000   00111 23446789999999 777777789999


Q ss_pred             EEEEcCCC
Q 015363          308 RLIDMRQS  315 (408)
Q Consensus       308 ~iwd~~~~  315 (408)
                      .-|++...
T Consensus       402 vkWni~~a  409 (638)
T 3sbq_A          402 VKWNMEEA  409 (638)
T ss_dssp             EEEEHHHH
T ss_pred             EEEeccHH
Confidence            99998753

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.47  E-value=11  Score=33.68  Aligned_cols=36  Identities=22%  Similarity=0.372  Sum_probs=23.0

Q ss_pred             ceeEEEEeecCCCcEEEEEeCC-CeEEEEEcCCCcEEEEe
Q 015363          114 KINKIRWCQSANSALYLLSTND-KTIKLWKVQEKKVKKVF  152 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d-~~i~vwd~~~~~~~~~~  152 (408)
                      ....|+|.  ++|.++++ ... +.|++++..+++...+.
T Consensus        28 ~P~~~a~~--pdG~l~V~-e~~gg~I~~~~~~~g~~~~~~   64 (454)
T 1cru_A           28 KPHALLWG--PDNQIWLT-ERATGKILRVNPESGSVKTVF   64 (454)
T ss_dssp             SEEEEEEC--TTSCEEEE-ETTTCEEEEECTTTCCEEEEE
T ss_pred             CceEEEEc--CCCcEEEE-EcCCCEEEEEECCCCcEeEEe
Confidence            46799995  45865555 555 47888876656544433

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=88.60  E-value=13  Score=33.08  Aligned_cols=227  Identities=9%  Similarity=0.112  Sum_probs=126.6

Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (408)
                      ...+|.-. ..++.++|+++............-       ..|        -|.+++.--+               -.+.
T Consensus        77 ~~iiALra-g~~lQiFnle~K~klks~~~~e~V-------vfW--------kWis~~~l~l---------------VT~t  125 (494)
T 1bpo_A           77 SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDV-------TFW--------KWISLNTVAL---------------VTDN  125 (494)
T ss_dssp             SSCEEEEE-TTEEEEEETTTTEEEEEEECSSCC-------CEE--------EEEETTEEEE---------------ECSS
T ss_pred             CcEEEEec-CCeEEEEchHHhhhhcceecCCCc-------eEE--------EecCCCeEEE---------------EcCC
Confidence            34555544 789999999999888877765432       111        1223322211               2456


Q ss_pred             eeeeceeeeccccccccccceeecccc----ccceEEEEeCCCCCEEEE-e---c----CCeEEEEeCCCCCceeeEeec
Q 015363          206 SLRLPVVVTSQETNLVAGCRRIYAHAH----DYHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDV  273 (408)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~  273 (408)
                      .|..|+ +.+     ...+.+.+ ..|    ...|.....+++.++++. |   .    .|.+.+|+.+. + ..+.   
T Consensus       126 aVyHWs-i~~-----~s~P~kvF-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~-~sQ~---  193 (494)
T 1bpo_A          126 AVYHWS-MEG-----ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-K-VSQP---  193 (494)
T ss_dssp             EEEEEE-SSS-----SCCCEEEE-ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-C-CEEE---
T ss_pred             eeEEec-ccC-----CCCchhhe-ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-c-ccch---
Confidence            777787 433     11232332 221    356778888999998874 3   2    36778999883 2 2222   


Q ss_pred             CCCcccCCcCCeEEEEEcCC--CCceEEEEeCC---CeEEEEEcCCCceecccc--cccccccCCCCccccccccceeEE
Q 015363          274 KPANMEDLTEVITSAEFHPT--HCNMLAYSSSK---GSIRLIDMRQSALCDTHS--KLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       274 ~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                          +++|......+...-+  ...+|+.+...   +.++|-++.....-..+.  +...-..++      .....-..+
T Consensus       194 ----ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp------e~~~DFPva  263 (494)
T 1bpo_A          194 ----IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------EAQNDFPVA  263 (494)
T ss_dssp             ----ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT------TSTTCCEEE
T ss_pred             ----heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc------ccccCceeE
Confidence                5777665544444321  11355555543   789999985431000000  000000000      111244567


Q ss_pred             EEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEe-cCCCeeeeeeceeee
Q 015363          347 IKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMH-SSKNYFMGLDNIHTL  406 (408)
Q Consensus       347 ~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~  406 (408)
                      +..|+.-..++.- ..|.|.+||+.+ +.++..-+-........+. ...+.++++.|.+.+
T Consensus       264 mqvs~kygviyviTK~G~i~lyDleT-gt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV  324 (494)
T 1bpo_A          264 MQISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  324 (494)
T ss_dssp             EEEETTTTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred             EEecccCCEEEEEecCceEEEEeccc-ceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence            8888876666655 469999999998 7887776665555444332 334557777766554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=87.71  E-value=11  Score=31.35  Aligned_cols=27  Identities=4%  Similarity=0.092  Sum_probs=19.9

Q ss_pred             CcEEEEEeCC------CeEEEEEcCCCcEEEEe
Q 015363          126 SALYLLSTND------KTIKLWKVQEKKVKKVF  152 (408)
Q Consensus       126 ~~~l~~~~~d------~~i~vwd~~~~~~~~~~  152 (408)
                      +.+++.|+.+      ..+.+||..+.+.....
T Consensus       102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~  134 (306)
T 3ii7_A          102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKP  134 (306)
T ss_dssp             TEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence            5677777755      46889999988776653

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=87.37  E-value=9.1  Score=33.26  Aligned_cols=111  Identities=13%  Similarity=0.112  Sum_probs=61.1

Q ss_pred             eEEEEeCCCCC-ceeeEeecCCCcccCCcCCeEEEEEc---CC---CCceE-EEEeCCCeEEEEEcCCCceecccccccc
Q 015363          255 RINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFH---PT---HCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFE  326 (408)
Q Consensus       255 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~---p~---~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~  326 (408)
                      .|.+||+.+.. +.++.+.+...... ....+..+++.   |.   +..++ ++=+...-|.++|+.+++..    +.+.
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw----Rv~~  198 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW----NVTH  198 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE----EEEC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE----EEcc
Confidence            56678888431 56666665433233 24567888887   32   11233 33334678999999998653    2221


Q ss_pred             cccCCC--Cccccccc----cceeEEEEEccC----CCEEEEeCCCeEEEEECC
Q 015363          327 EQEAPG--TRSFFTEI----IASISDIKFARN----GRHILSRDYMTLKLWDIN  370 (408)
Q Consensus       327 ~~~~~~--~~~~~~~h----~~~i~~~~~spd----g~~l~s~~d~~v~~wd~~  370 (408)
                      .+..+.  ......+.    ...|..++++|+    ++.|+-..-..-++|.+.
T Consensus       199 ~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~  252 (381)
T 3q6k_A          199 PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVN  252 (381)
T ss_dssp             GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEE
T ss_pred             CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEE
Confidence            111111  11111222    247889999998    788876643334455554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=86.68  E-value=17  Score=32.35  Aligned_cols=210  Identities=16%  Similarity=0.197  Sum_probs=115.0

Q ss_pred             EEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEE
Q 015363           41 IEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW  120 (408)
Q Consensus        41 ~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~  120 (408)
                      .-.+|..+.||.=. ..++.|+|+++...                          +..|.          ..+.|.--.|
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~k--------------------------lks~~----------~~e~VvfWkW  113 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSK--------------------------MKAHT----------MTDDVTFWKW  113 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEE--------------------------EEEEE----------CSSCCCEEEE
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhh--------------------------hccee----------cCCCceEEEe
Confidence            44667766666654 56788888776542                          33332          1256778888


Q ss_pred             eecCCCcEEEEEeCCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCcccc
Q 015363          121 CQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSF  199 (408)
Q Consensus       121 ~p~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  199 (408)
                      ...   +.|+..+ +..|.-|++.. ....+++..+..-.    +..+.       ....+++.+.+....-...     
T Consensus       114 is~---~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~----~~QII-------nY~~d~~~kW~~l~GI~~~-----  173 (494)
T 1bpo_A          114 ISL---NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA----GCQII-------NYRTDAKQKWLLLTGISAQ-----  173 (494)
T ss_dssp             EET---TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT----TCEEE-------EEEECTTSSEEEEEEEEEE-----
T ss_pred             cCC---CeEEEEc-CCeeEEecccCCCCchhheecchhcc----cceEE-------EEEECCCCCeEEEEeeccc-----
Confidence            622   3565544 45899999974 34455555443221    12222       3444555555421100000     


Q ss_pred             CCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC---CEEEEe----cCCeEEEEeCCCC---Ccee-
Q 015363          200 PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG---ETFISA----DDLRINLWNLEIS---NQSF-  268 (408)
Q Consensus       200 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~~~----~d~~i~iwd~~~~---~~~~-  268 (408)
                      .+.-.|.+.+|. +.+       +..+. +.+|......+.+..+.   .+|..+    ..+.++|.++...   ...+ 
T Consensus       174 ~~~v~G~mQLYS-~er-------~~sQ~-ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~  244 (494)
T 1bpo_A          174 QNRVVGAMQLYS-VDR-------KVSQP-IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP  244 (494)
T ss_dssp             TTEEEEEEEEEE-STT-------CCEEE-ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC
T ss_pred             CCcccceEEEee-ccc-------cccch-heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc
Confidence            012246677776 222       11122 47887777666554322   233334    2489999998643   1111 


Q ss_pred             -eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          269 -NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       269 -~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                       +.+++.-. -..-.+-..++..++.. .++..-+.-|.|.+||+.++..+
T Consensus       245 kk~vdv~fp-pe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i  293 (494)
T 1bpo_A          245 KKAVDVFFP-PEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCI  293 (494)
T ss_dssp             CEEEECCCC-TTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEE
T ss_pred             ceeeeeeCC-cccccCceeEEEecccC-CEEEEEecCceEEEEecccceee
Confidence             11221100 11223445688999888 78888889999999999999643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=86.03  E-value=5.2  Score=34.17  Aligned_cols=29  Identities=0%  Similarity=-0.002  Sum_probs=25.3

Q ss_pred             cEEEEEeCCCeEEEEEcCCCcEEEEeccC
Q 015363          127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWN  155 (408)
Q Consensus       127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  155 (408)
                      .++++++.||.|.-.|..+|+.+..+...
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~   39 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE   39 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence            48899999999999999999988877664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=85.02  E-value=15  Score=30.36  Aligned_cols=28  Identities=11%  Similarity=0.172  Sum_probs=19.6

Q ss_pred             CcEEEEEeCC-----CeEEEEEcCCCcEEEEec
Q 015363          126 SALYLLSTND-----KTIKLWKVQEKKVKKVFD  153 (408)
Q Consensus       126 ~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~  153 (408)
                      +.+++.|+.+     ..+.++|+.+.+......
T Consensus       113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~  145 (301)
T 2vpj_A          113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD  145 (301)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEcccCCCcccceEEEEcCCCCeEEECCC
Confidence            5677777643     368889998887766543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=84.71  E-value=16  Score=30.34  Aligned_cols=28  Identities=14%  Similarity=0.328  Sum_probs=20.6

Q ss_pred             CcEEEEEeCC----CeEEEEEcCCCcEEEEec
Q 015363          126 SALYLLSTND----KTIKLWKVQEKKVKKVFD  153 (408)
Q Consensus       126 ~~~l~~~~~d----~~i~vwd~~~~~~~~~~~  153 (408)
                      +.+++.|+.+    ..+.++|..+++......
T Consensus        56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             TEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            5677777755    678899999887766544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=83.87  E-value=45  Score=34.83  Aligned_cols=173  Identities=17%  Similarity=0.198  Sum_probs=87.4

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      .+|.--.|. +  .+.|+..+ +..|.-|++... ....++..+..-    .+..|.       ....+++.+.+....-
T Consensus       106 e~VvfWkWi-s--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L----~~~QIi-------nY~~d~~~kW~~l~gi  170 (1630)
T 1xi4_A          106 DDVTFWKWI-S--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL----AGCQII-------NYRTDAKQKWLLLTGI  170 (1630)
T ss_pred             CCceEEEec-C--CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhc----ccCeeE-------EeeeCCCCCeEEEEee
Confidence            667777885 2  23555544 457999999742 222333222111    011222       3344455554411100


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeC--CCC-CEEEEe----cCCeEEEEeCCCC
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN--SDG-ETFISA----DDLRINLWNLEIS  264 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~-~~l~~~----~d~~i~iwd~~~~  264 (408)
                      ..     -.+.-.|.+.+|. +.+...       +. +.+|......+...  +.. .++..+    ..+.++|-++...
T Consensus       171 ~~-----~~~~v~G~mQLyS-~er~~s-------Q~-iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~  236 (1630)
T 1xi4_A          171 SA-----QQNRVVGAMQLYS-VDRKVS-------QP-IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP  236 (1630)
T ss_pred             cc-----CCCcccceeeeee-cccccc-------hh-hhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCC
Confidence            00     0123457777777 332111       11 36666655544443  222 233333    2378999988643


Q ss_pred             ---Cceee--EeecCCCccc--CCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          265 ---NQSFN--IVDVKPANME--DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       265 ---~~~~~--~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                         ...+.  .+++   .++  .-.+-..++..++.. .++..-+.-|.|.+||+.++..+
T Consensus       237 ~~~~~~f~kk~~~~---~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          237 PTGNQPFPKKAVDV---FFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             ccCCCCCccccccc---cCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhh
Confidence               11111  1111   011  123334578888887 67778889999999999999643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=80.42  E-value=23  Score=29.22  Aligned_cols=65  Identities=8%  Similarity=0.098  Sum_probs=35.1

Q ss_pred             CCCEEEEe-cC-----CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC-----eEEEEEc
Q 015363          244 DGETFISA-DD-----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-----SIRLIDM  312 (408)
Q Consensus       244 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-----~i~iwd~  312 (408)
                      ++.+++.| .+     ..+.+||..+ ..-..+ ..    +.........+.+  ++ .+++.|+.++     .+.+||.
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~-~~----~~~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTT-NAWRQV-AD----MNMCRRNAGVCAV--NG-LLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTT-TEEEEE-CC----CSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCC-CCEeeC-CC----CCCccccCeEEEE--CC-EEEEECCcCCCcccccEEEEcC
Confidence            56666665 32     4688999873 332222 11    1111111122222  55 7888887653     4889998


Q ss_pred             CCCce
Q 015363          313 RQSAL  317 (408)
Q Consensus       313 ~~~~~  317 (408)
                      .+.+-
T Consensus       275 ~~~~W  279 (302)
T 2xn4_A          275 TTDKW  279 (302)
T ss_dssp             TTTEE
T ss_pred             CCCeE
Confidence            87643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	408
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.003
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-05

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 38/310 (12%), Positives = 92/310 (29%), Gaps = 37/310 (11%)

Query: 102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA 161
           + +  KSL+    +  +++        YL +  +KT ++++V +  +      +    K 
Sbjct: 52  DVELHKSLDHTSVVCCVKFSNDGE---YLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 108

Query: 162 AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVV-------- 213
             N     S  S +    +     G+     A +         +   + ++         
Sbjct: 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168

Query: 214 -----------------TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR 255
                            T +  +L  G   +     D       +  DG+   +   D  
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228

Query: 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315
           + +W+ E +      +D +  +     + + S  F       +   S   S++L +++ +
Sbjct: 229 VRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNA 286

Query: 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSG 374
                                +      +  +   +N  +ILS      +  WD      
Sbjct: 287 NNKSDSKTPNSGT----CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK-SGN 341

Query: 375 PVATFQVHEH 384
           P+   Q H +
Sbjct: 342 PLLMLQGHRN 351

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 33/285 (11%), Positives = 76/285 (26%), Gaps = 29/285 (10%)

Query: 38  ISAIEFDKSGDHLATG-----DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92
           I ++ F   G  LATG      R   +   +         Q         S  +      
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183

Query: 93  KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF 152
               +  +            E           +       + D+ +++W  +   + +  
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243

Query: 153 DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV 212
           D                 H  ++        G   ++    S D S     + +      
Sbjct: 244 DSENES---------GTGHKDSVYSVVFTRDG---QSVVSGSLDRSVKLWNLQNANNKSD 291

Query: 213 VTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271
             +  +        +    H   + S++   + E  +S   D  +  W+ +    S N +
Sbjct: 292 SKTPNSG----TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK----SGNPL 343

Query: 272 DVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314
            +   +   +  V     +   P + N+ A  S     R+   ++
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEY-NVFATGSGDCKARIWKYKK 387

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 38/283 (13%), Positives = 86/283 (30%), Gaps = 19/283 (6%)

Query: 112 EEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170
              + ++ +    +    ++S + D TIK+W  +    ++    +    +          
Sbjct: 17  RSPVTRVIFHPVFS---VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73

Query: 171 HVSAIPKSYMANGGCGERNFGC---ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI 227
             S      +                 + +      + +    V  +  +T  +   +  
Sbjct: 74  LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133

Query: 228 YA----HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 282
           Y       H   +  +  N DG    S  +D  + +W +     +         +   + 
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVE 189

Query: 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342
            +  + E   +  +    S +K S +      S   D   K+++        +       
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DN 248

Query: 343 SISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEH 384
            +  + F   G+ ILS  D  TL++WD       + T   HEH
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEH 290

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.79
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.79
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.7
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.6
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.52
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.51
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.5
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.28
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.15
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.09
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.07
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.05
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.04
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.03
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.02
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.01
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.0
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.91
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.89
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.76
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.71
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.69
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.66
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.64
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.53
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.36
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.3
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.25
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.16
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.84
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.54
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.75
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.43
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.2
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.69
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.01
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.85
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.72
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.66
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.31
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.16
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	92.93
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	91.71
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	91.42
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.91
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.29
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.0
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	86.88
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	85.28
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	84.33
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	83.99
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	83.36

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.2e-36  Score=266.60  Aligned_cols=297  Identities=15%  Similarity=0.231  Sum_probs=203.8

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      .+|.+.|+||+|+|||++||+|+ |+.|+|||+.+++..    ..+..... ....+.........+|.           
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~-----------  121 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV----ARLSDDSA-ANKDPENLNTSSSPSSD-----------  121 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE----EEECC------------------CCC-----------
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceE----eeeccccc-ccccccccccccccCCC-----------
Confidence            46999999999999999999997 889999999876531    10000000 00000111111223333           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       ..|++++|+|+  +++|++|+.||.|++|+...++.......+..        .+.       .+.+++++..+     
T Consensus       122 -~~V~~l~~s~~--~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~--------~v~-------~~~~~~~~~~~-----  178 (388)
T d1erja_         122 -LYIRSVCFSPD--GKFLATGAEDRLIRIWDIENRKIVMILQGHEQ--------DIY-------SLDYFPSGDKL-----  178 (388)
T ss_dssp             -CBEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEEEECCCSS--------CEE-------EEEECTTSSEE-----
T ss_pred             -CCEEEEEECCC--CCcceecccccccccccccccccccccccccc--------ccc-------ccccccccccc-----
Confidence             77999999754  88999999999999999999988777665432        344       67889998887     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             ++++.++.+++|| ....      ..... ...+...+....+.+++++|+++ .|+.|++||.++.. ....
T Consensus       179 -------~~~~~~~~i~~~d-~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~  242 (388)
T d1erja_         179 -------VSGSGDRTVRIWD-LRTG------QCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVER  242 (388)
T ss_dssp             -------EEEETTSEEEEEE-TTTT------EEEEE-EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEE
T ss_pred             -------cccccceeeeeee-cccc------ccccc-cccccccccccccCCCCCeEEEEcCCCeEEEeecccCc-ccee
Confidence                   8899999999999 4321      11121 13333444444445578999998 89999999999544 3333


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                      +........+|...|++++|+|++ .+|++++.|+.|++||++++...    .................|...|.+++|+
T Consensus       243 ~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s  317 (388)
T d1erja_         243 LDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNK----SDSKTPNSGTCEVTYIGHKDFVLSVATT  317 (388)
T ss_dssp             EC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC-------------------CEEEEEECCSSCEEEEEEC
T ss_pred             eccccccccCCCCCEEEEEECCCC-CEEEEEECCCcEEEEeccCCccc----cccccccccceeeecccccceEEEEEEC
Confidence            332223356789999999999999 99999999999999999887543    2222222222233455677899999999


Q ss_pred             cCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEE
Q 015363          351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVM  390 (408)
Q Consensus       351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  390 (408)
                      |++++|++|+ ||.|++||+++ ++++.++++|......+.
T Consensus       318 ~~~~~l~sg~~dg~i~vwd~~~-~~~~~~l~~H~~~V~~~~  357 (388)
T d1erja_         318 QNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVISVA  357 (388)
T ss_dssp             GGGCEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEECCC-CcEEEEEeCCCCCEEEEE
Confidence            9999999985 79999999998 799999999988766554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.9e-36  Score=258.16  Aligned_cols=265  Identities=14%  Similarity=0.177  Sum_probs=206.1

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..+.+.+.+++++|+|+.||.+. ++.|.+|++.+...                       ...+.+|.           
T Consensus        14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~-----------------------~~~~~~H~-----------   58 (311)
T d1nr0a1          14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-----------------------TEIYTEHS-----------   58 (311)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC-----------------------CEEECCCS-----------
T ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCce-----------------------eEEEcCCC-----------
Confidence            45566778899999999999985 56899999987653                       35678888           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       ..|++++|+|+  |++|++|+.||+|++||+.++..........+      .+.+.       +++|+|+++.+     
T Consensus        59 -~~v~~~~~sp~--g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~-------~v~~s~d~~~l-----  117 (311)
T d1nr0a1          59 -HQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQTTHILKTTIPVF------SGPVK-------DISWDSESKRI-----  117 (311)
T ss_dssp             -SCEEEEEECTT--SSEEEEEETTSEEEEEESSSTTCCEEEEEECS------SSCEE-------EEEECTTSCEE-----
T ss_pred             -CCEEEEEEeCC--CCeEeccccCceEeeeeeeccccccccccccc------cCccc-------ccccccccccc-----
Confidence             77999999755  88999999999999999998764332222111      22344       78999999987     


Q ss_pred             cccCccccCCCC--CceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCE-EEEe-cCCeEEEEeCCCCCce
Q 015363          192 CASNDSSFPPGG--VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       192 ~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~  267 (408)
                             ++++.  +..+++|+ ...      .+.... +.+|...|++++|+|++++ |++| .|+.|++||+++ .+.
T Consensus       118 -------~~~~~~~~~~~~v~~-~~~------~~~~~~-l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-~~~  181 (311)
T d1nr0a1         118 -------AAVGEGRERFGHVFL-FDT------GTSNGN-LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKF  181 (311)
T ss_dssp             -------EEEECCSSCSEEEEE-TTT------CCBCBC-CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEE
T ss_pred             -------ccccccccccccccc-ccc------cccccc-ccccccccccccccccceeeecccccccccccccccc-ccc
Confidence                   55543  56688888 322      222333 3788899999999999985 6777 899999999994 444


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      ...       +..|...|+++.|+|++ ++|++++.|+.|++||++++...    ..++..     .....+|...|.++
T Consensus       182 ~~~-------~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~----~~~~~~-----~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         182 KST-------FGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKT----GVFEDD-----SLKNVAHSGSVFGL  244 (311)
T ss_dssp             EEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EECBCT-----TSSSCSSSSCEEEE
T ss_pred             ccc-------cccccccccccccCccc-ccccccccccccccccccccccc----cccccc-----cccccccccccccc
Confidence            333       56789999999999999 99999999999999999988654    333322     12245678899999


Q ss_pred             EEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeeccccc
Q 015363          348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR  386 (408)
Q Consensus       348 ~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~  386 (408)
                      +|+|++++|++|+ |+.|+|||+++ +++++++..|....
T Consensus       245 ~~s~~~~~l~tgs~Dg~v~iwd~~t-~~~~~~l~~~~~~~  283 (311)
T d1nr0a1         245 TWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIE  283 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGG
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCC-CcEEEEEECCCCcc
Confidence            9999999999985 79999999998 79999998887653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=258.75  Aligned_cols=281  Identities=14%  Similarity=0.225  Sum_probs=211.3

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...|.+.|+|++|+|+|++||+|+ ||.|+|||+......                  .........+|.          
T Consensus        47 ~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~------------------~~~~~~~~~~h~----------   97 (337)
T d1gxra_          47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------SPVSQLDCLNRD----------   97 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------SCSEEEECSCTT----------
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc------------------ceeEEeeecCCC----------
Confidence            347999999999999999999998 789999998866431                  111122345666          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE--EEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK--KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                        ..|.+++|+|+  +.+|++++.|++|++||+......  ..+..+.        ..+.       .+.++|++..+  
T Consensus        98 --~~I~~v~~s~d--g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~-------~~~~~~~~~~l--  156 (337)
T d1gxra_          98 --NYIRSCKLLPD--GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA--------PACY-------ALAISPDSKVC--  156 (337)
T ss_dssp             --SBEEEEEECTT--SSEEEEEESSSEEEEEECCCC--EEEEEEECSS--------SCEE-------EEEECTTSSEE--
T ss_pred             --CcEEEEEEcCC--CCEEEEeeccccccccccccccccccccccccc--------cccc-------ccccccccccc--
Confidence              77999999754  889999999999999999865433  3333222        1233       57899999887  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                                ++++.++.|++|+ +..      ..+... ...|...+++++|++++..++++ .|+.|++||+++. +.
T Consensus       157 ----------~s~~~d~~i~~~~-~~~------~~~~~~-~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~-~~  217 (337)
T d1gxra_         157 ----------FSCCSDGNIAVWD-LHN------QTLVRQ-FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-RQ  217 (337)
T ss_dssp             ----------EEEETTSCEEEEE-TTT------TEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EE
T ss_pred             ----------ccccccccccccc-ccc------cccccc-ccccccccccccccccccccccccccccccccccccc-ee
Confidence                      8999999999999 433      223333 36788999999999999999999 8999999999844 44


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      +..        ..|...|.+++|+|++ .+|++++.|+.|++||++++...     ....|            ...|.++
T Consensus       218 ~~~--------~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~------------~~~i~~v  271 (337)
T d1gxra_         218 LQQ--------HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKY-----QLHLH------------ESCVLSL  271 (337)
T ss_dssp             EEE--------EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCEE-----EECCC------------SSCEEEE
T ss_pred             ecc--------cccccceEEEEEcccc-cccceeccccccccccccccccc-----ccccc------------ccccceE
Confidence            433        2367889999999999 99999999999999999987542     22333            4789999


Q ss_pred             EEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee---eeceeeecC
Q 015363          348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG---LDNIHTLYE  408 (408)
Q Consensus       348 ~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~  408 (408)
                      +|+|++++|++++ |+.|++||+.+ ++++..+. |......+....++..++   .|+.-++|+
T Consensus       272 ~~s~~g~~l~s~s~Dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         272 KFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTT-CCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCC-CCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            9999999999985 79999999997 68887765 444444444333444432   355556653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.7e-36  Score=258.68  Aligned_cols=254  Identities=13%  Similarity=0.126  Sum_probs=196.8

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|++++|+|+|++||+|+.||+|+|||+.+....                     ....+.+|.          
T Consensus        54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~---------------------~~~~~~~~~----------  102 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---------------------LKTTIPVFS----------  102 (311)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---------------------EEEEEECSS----------
T ss_pred             EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc---------------------ccccccccc----------
Confidence            3579999999999999999999999999999998876532                     334577787          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeC--CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          111 IEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                        .+|.+++|+|+  +.+|++++.  ++.+++|++++++....+..+.        ..+.       .++|+|+++.+  
T Consensus       103 --~~v~~v~~s~d--~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~--------~~v~-------~v~~~~~~~~~--  161 (311)
T d1nr0a1         103 --GPVKDISWDSE--SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA--------RAMN-------SVDFKPSRPFR--  161 (311)
T ss_dssp             --SCEEEEEECTT--SCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS--------SCEE-------EEEECSSSSCE--
T ss_pred             --Ccccccccccc--ccccccccccccccccccccccccccccccccc--------cccc-------cccccccceee--
Confidence              77999999754  788988875  5679999999887665544432        2344       68899999864  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                               +++++.|+.|++|| +..      .++... ...|...|++++|+|++++++++ .|+.|++||.... ..
T Consensus       162 ---------l~sgs~d~~i~i~d-~~~------~~~~~~-~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~-~~  223 (311)
T d1nr0a1         162 ---------IISGSDDNTVAIFE-GPP------FKFKST-FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TK  223 (311)
T ss_dssp             ---------EEEEETTSCEEEEE-TTT------BEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CE
T ss_pred             ---------eccccccccccccc-ccc------cccccc-cccccccccccccCccccccccccccccccccccccc-cc
Confidence                     37889999999999 433      223333 37888999999999999999999 8999999999844 44


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      ...++.......+|...|++++|+|++ ++|++|+.||.|+|||+++++..    +++..+..         +...+.++
T Consensus       224 ~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~~~----~~l~~~~~---------~~~~~~~~  289 (311)
T d1nr0a1         224 TGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVE----KTIPVGTR---------IEDQQLGI  289 (311)
T ss_dssp             EEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEECCSS---------GGGCEEEE
T ss_pred             cccccccccccccccccccccccCCCC-CEEEEEeCCCeEEEEECCCCcEE----EEEECCCC---------ccceEEEE
Confidence            444444444567799999999999999 99999999999999999998654    55554421         12345555


Q ss_pred             EEccCCCEEEEe-CCCeEEEEECC
Q 015363          348 KFARNGRHILSR-DYMTLKLWDIN  370 (408)
Q Consensus       348 ~~spdg~~l~s~-~d~~v~~wd~~  370 (408)
                      .|+  +.+|+++ .||.|++||.+
T Consensus       290 ~~~--~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         290 IWT--KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEC--SSCEEEEETTCCEEEEETT
T ss_pred             Eec--CCEEEEEECCCEEEEEeCC
Confidence            555  5567776 58999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-35  Score=263.82  Aligned_cols=256  Identities=11%  Similarity=0.127  Sum_probs=199.8

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      .++|+|++|+|+|++||+|+.||.|+||+..+++.                     .....+++|.            ..
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~---------------------~~~~~l~gH~------------~~   53 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------VQVHELKEHN------------GQ   53 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------------EEEEEEECCS------------SC
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE---------------------EEEEEecCCC------------CC
Confidence            47899999999999999999999999999876642                     2456788998            77


Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      |++++|+|+  +++|++++.|++|++||+.++..........+      ...+.       ++.|+|+++.+        
T Consensus        54 V~~l~fsp~--~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~------~~~v~-------~i~~~p~~~~l--------  110 (371)
T d1k8kc_          54 VTGVDWAPD--SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI------NRAAR-------CVRWAPNEKKF--------  110 (371)
T ss_dssp             EEEEEEETT--TTEEEEEETTSCEEEEEEETTEEEEEEECCCC------SSCEE-------EEEECTTSSEE--------
T ss_pred             EEEEEECCC--CCEEEEEECCCeEEEEeecccccccccccccc------ccccc-------ccccccccccc--------
Confidence            999999765  78999999999999999998876665544322      22344       78999999987        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee-
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD-  272 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~-  272 (408)
                          ++++.++.+++|+ +.......   ........|...|.+++|+|++++|++| .|+.|++||............ 
T Consensus       111 ----~~~s~d~~i~i~~-~~~~~~~~---~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~  182 (371)
T d1k8kc_         111 ----AVGSGSRVISICY-FEQENDWW---VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT  182 (371)
T ss_dssp             ----EEEETTSSEEEEE-EETTTTEE---EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred             ----eeecccCcceeee-eecccccc---cccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccc
Confidence                9999999999998 54322211   1112236788899999999999999999 999999999864321110000 


Q ss_pred             ---c------CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363          273 ---V------KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS  343 (408)
Q Consensus       273 ---~------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  343 (408)
                         .      .......|...|.+++|+|++ ++|++++.|+.|++||+.++..+    ..+..|            ..+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~------------~~~  245 (371)
T d1k8kc_         183 PWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAV----ATLASE------------TLP  245 (371)
T ss_dssp             TTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEE----EEEECS------------SCC
T ss_pred             cccccccceeeeeeccCccCcEEEEEeeccc-ccccccccCCcceEEeeecccce----eeeecc------------ccc
Confidence               0      001246788899999999999 89999999999999999988654    555555            468


Q ss_pred             eEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363          344 ISDIKFARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       344 i~~~~~spdg~~l~s~~d~~v~~wd~~~  371 (408)
                      |.+++|+||+++|++|.|+.+++|..+.
T Consensus       246 v~s~~fs~d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         246 LLAVTFITESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             EEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             ceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence            9999999999999999887777776654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-34  Score=253.47  Aligned_cols=270  Identities=14%  Similarity=0.181  Sum_probs=194.4

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.++|++|+|+|++++||||+.||+|+|||+.+++                       .+..+..|.          
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~-----------------------~~~~~~~~~----------   97 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----------------------KVHAIPLRS----------   97 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-----------------------EEEEEECSC----------
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce-----------------------eEEEEeccc----------
Confidence            45799999999999999999999999999999988765                       345677887          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc----EEEEeccCCCCc---ccCCCCCeEeec-CCceeeEEcc-
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPE---KAAGNGPIFGSH-VSAIPKSYMA-  181 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~---~~~~~~~v~~~~-~~~~~~~~~~-  181 (408)
                        ..|.+++|+|+  +.++++++.|+.+++|+.....    ....+..+....   .......+.... +......... 
T Consensus        98 --~~v~~v~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (340)
T d1tbga_          98 --SWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET  173 (340)
T ss_dssp             --SCEEEEEECTT--SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTT
T ss_pred             --ccEEeeEeecc--ceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccccccccccccc
Confidence              77999999754  8899999999999999987542    222222221110   000000011000 0000001000 


Q ss_pred             ---------CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-
Q 015363          182 ---------NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  251 (408)
Q Consensus       182 ---------~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-  251 (408)
                               ....+..........+++++..++.|++|| +..      ..+...+ .+|...|++++|+|++++|+++ 
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d-~~~------~~~~~~~-~~h~~~i~~v~~~p~~~~l~s~s  245 (340)
T d1tbga_         174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD-VRE------GMCRQTF-TGHESDINAICFFPNGNAFATGS  245 (340)
T ss_dssp             TEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEE-TTT------TEEEEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccceeEeeeccccccceeEEeecCceEEEEE-CCC------CcEEEEE-eCCCCCeEEEEECCCCCEEEEEe
Confidence                     111111112222334468899999999999 433      3344444 7899999999999999999999 


Q ss_pred             cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363          252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP  331 (408)
Q Consensus       252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  331 (408)
                      .|+.|++||++... ....+     ....+...+.+++|+|++ .+|++|+.||.|++||+.+++.+    ..+.+|   
T Consensus       246 ~d~~i~~~~~~~~~-~~~~~-----~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~~----~~~~~H---  311 (340)
T d1tbga_         246 DDATCRLFDLRADQ-ELMTY-----SHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRA----GVLAGH---  311 (340)
T ss_dssp             TTSCEEEEETTTTE-EEEEE-----CCTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCCEE----EEECCC---
T ss_pred             CCCeEEEEeecccc-ccccc-----ccccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCcEE----EEEcCC---
Confidence            99999999999443 33332     245567789999999999 99999999999999999988654    566666   


Q ss_pred             CCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEE
Q 015363          332 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWD  368 (408)
Q Consensus       332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd  368 (408)
                               .+.|.+++|+|++++|++|+ ||.|++||
T Consensus       312 ---------~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         312 ---------DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ---------SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ---------CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                     57899999999999999985 79999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.3e-34  Score=245.83  Aligned_cols=282  Identities=17%  Similarity=0.293  Sum_probs=227.0

Q ss_pred             cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ...+|.++|++|+|+|++++||||+.||+|+|||+.+++.                       +..+.+|.         
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~-----------------------~~~~~~h~---------   59 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------ERTLKGHT---------   59 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------CEEECCCS---------
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE-----------------------EEEEeCCC---------
Confidence            3467999999999999999999999999999999987653                       46788888         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|.+++|+|+  +.+++++..++.+.+|+....+.......+..        .+.       .+.+++++..+   
T Consensus        60 ---~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-------~~~~~~~~~~~---  116 (317)
T d1vyhc1          60 ---DSVQDISFDHS--GKLLASCSADMTIKLWDFQGFECIRTMHGHDH--------NVS-------SVSIMPNGDHI---  116 (317)
T ss_dssp             ---SCEEEEEECTT--SSEEEEEETTSCCCEEETTSSCEEECCCCCSS--------CEE-------EEEECSSSSEE---
T ss_pred             ---CcEEEEeeecc--cccccccccccccccccccccccccccccccc--------cce-------eeeccCCCceE---
Confidence               77999999654  88999999999999999988876665544322        222       57889999887   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                               ++++.|+.+++|+ +..      ......+ ..|...+.+++|+|++.+|+++ .|+.|++|++.......
T Consensus       117 ---------~~~~~d~~~~~~~-~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~  179 (317)
T d1vyhc1         117 ---------VSASRDKTIKMWE-VQT------GYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA  179 (317)
T ss_dssp             ---------EEEETTSEEEEEE-TTT------CCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ---------EeeccCcceeEee-ccc------ceeeeEE-ccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeE
Confidence                     9999999999999 433      2233333 7788899999999999999999 99999999999544333


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCC-------------------ceEEEEeCCCeEEEEEcCCCceeccccccccccc
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHC-------------------NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE  329 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~-------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  329 (408)
                      .        +..|...+.+++|+|++.                   .++++++.|+.|++||+++++.+    ..+.+| 
T Consensus       180 ~--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~----~~~~~~-  246 (317)
T d1vyhc1         180 E--------LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL----MTLVGH-  246 (317)
T ss_dssp             E--------ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE----EEEECC-
T ss_pred             E--------EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE----EEEeCC-
Confidence            2        466788888999887641                   36899999999999999988654    556665 


Q ss_pred             CCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeee-e--eeceee
Q 015363          330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM-G--LDNIHT  405 (408)
Q Consensus       330 ~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~d~~~~  405 (408)
                                 ...|.+++|+|++++|++|+ |+.|++||+.+ +++++++.+|......+....++..+ .  .|...+
T Consensus       247 -----------~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~  314 (317)
T d1vyhc1         247 -----------DNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK  314 (317)
T ss_dssp             -----------SSCEEEEEECSSSSCEEEEETTTEEEEECCTT-SCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             -----------CCCEEEEEECCCCCEEEEEECCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Confidence                       47899999999999999985 79999999997 79999999999887777654444443 2  366666


Q ss_pred             ecC
Q 015363          406 LYE  408 (408)
Q Consensus       406 ~~~  408 (408)
                      |||
T Consensus       315 iWd  317 (317)
T d1vyhc1         315 VWE  317 (317)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            665

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-34  Score=250.43  Aligned_cols=258  Identities=11%  Similarity=0.150  Sum_probs=204.1

Q ss_pred             cccceeeecccCc--CcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccc
Q 015363           14 PLEWKFSQVFGER--TAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR   91 (408)
Q Consensus        14 ~~~w~~~~~~~~~--~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~   91 (408)
                      -..|++.......  .......|.+.|.+++|+|++++|++|+.||.|++||+.....                     +
T Consensus        74 V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~---------------------~  132 (337)
T d1gxra_          74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP---------------------R  132 (337)
T ss_dssp             EEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------------------E
T ss_pred             EEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc---------------------c
Confidence            4568766432111  1123357899999999999999999999999999999875532                     2


Q ss_pred             eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeec
Q 015363           92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH  171 (408)
Q Consensus        92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (408)
                      ....+..|.            ..|.+++|+|  ++.++++++.|+.|++|++.+++.......+..        .+.   
T Consensus       133 ~~~~~~~~~------------~~v~~~~~~~--~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~--------~v~---  187 (337)
T d1gxra_         133 IKAELTSSA------------PACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD--------GAS---  187 (337)
T ss_dssp             EEEEEECSS------------SCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--------CEE---
T ss_pred             ccccccccc------------cccccccccc--ccccccccccccccccccccccccccccccccc--------ccc---
Confidence            445677777            6699999965  478999999999999999999987766555432        243   


Q ss_pred             CCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe
Q 015363          172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA  251 (408)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  251 (408)
                          ++++++++..+            ++++.++.+++|| +..      .+..+.  ..|...|.+++|+|+++.|+++
T Consensus       188 ----~l~~s~~~~~~------------~~~~~d~~v~i~d-~~~------~~~~~~--~~~~~~i~~l~~~~~~~~l~~~  242 (337)
T d1gxra_         188 ----CIDISNDGTKL------------WTGGLDNTVRSWD-LRE------GRQLQQ--HDFTSQIFSLGYCPTGEWLAVG  242 (337)
T ss_dssp             ----EEEECTTSSEE------------EEEETTSEEEEEE-TTT------TEEEEE--EECSSCEEEEEECTTSSEEEEE
T ss_pred             ----ccccccccccc------------ccccccccccccc-ccc------ceeecc--cccccceEEEEEccccccccee
Confidence                68899999987            8899999999999 433      222222  3577889999999999999998


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC
Q 015363          252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA  330 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  330 (408)
                       .|+.+++||++... ...        ...|...|++++|+|++ ++|++++.|+.|++||+.+++.+    ..+. |  
T Consensus       243 ~~d~~i~i~d~~~~~-~~~--------~~~~~~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~~~~~----~~~~-~--  305 (337)
T d1gxra_         243 MESSNVEVLHVNKPD-KYQ--------LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASI----FQSK-E--  305 (337)
T ss_dssp             ETTSCEEEEETTSSC-EEE--------ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEE-C--
T ss_pred             ccccccccccccccc-ccc--------ccccccccceEEECCCC-CEEEEEeCCCeEEEEECCCCCEE----EEcc-C--
Confidence             99999999999544 332        35688999999999999 99999999999999999988654    3322 2  


Q ss_pred             CCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363          331 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       331 ~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~  369 (408)
                                ...|.+++|+|++++|++|+ |++|+|||+
T Consensus       306 ----------~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         306 ----------SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ----------SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ----------CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                      36899999999999999985 799999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.5e-33  Score=240.03  Aligned_cols=246  Identities=12%  Similarity=0.140  Sum_probs=181.6

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeee-ccCCccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSL  109 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~~  109 (408)
                      ..+|.++|++|+|+|++++||||+.||+|+|||+.+++.                       ...+ .+|.         
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~-----------------------~~~~~~~h~---------   55 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS-----------------------NRVFPDVHA---------   55 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EECSSCSCS---------
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-----------------------EEEEcCCCC---------
Confidence            457999999999999999999999999999999987653                       2233 4566         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         ..|++++|+|+  +. +++++.|+.+++|+...........            ...........++++++++.+   
T Consensus        56 ---~~v~~v~~~~~--g~-~~~~~~d~~v~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~s~~g~~~---  114 (299)
T d1nr0a2          56 ---TMITGIKTTSK--GD-LFTVSWDDHLKVVPAGGSGVDSSKA------------VANKLSSQPLGLAVSADGDIA---  114 (299)
T ss_dssp             ---SCEEEEEECTT--SC-EEEEETTTEEEEECSSSSSSCTTSC------------CEEECSSCEEEEEECTTSSCE---
T ss_pred             ---CcEEEEEeecc--ce-eecccceeeEEEeccCCcccccccc------------ccccccccccccccccccccc---
Confidence               77999999754  64 6677889999999987543211000            000011122268889998864   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                                +++.++.+.+|+ ...         ...  ......+.+++|+|++++|+++ .|+.|++||++. ....
T Consensus       115 ----------~~~~~~~i~~~~-~~~---------~~~--~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~-~~~~  171 (299)
T d1nr0a2         115 ----------VAACYKHIAIYS-HGK---------LTE--VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG-ASVS  171 (299)
T ss_dssp             ----------EEEESSEEEEEE-TTE---------EEE--EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-TEEE
T ss_pred             ----------cccccccccccc-ccc---------ccc--ccccccccccccccccccccccccccccccccccc-cccc
Confidence                      344566888887 211         111  1223457889999999999999 999999999984 3333


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      ...      ...|...|++++|+|++ .+|++++.|+.|++||+.++... .....+            .+|...|.+++
T Consensus       172 ~~~------~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~------------~~h~~~v~~l~  231 (299)
T d1nr0a2         172 EVK------TIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFEL-AHTNSW------------TFHTAKVACVS  231 (299)
T ss_dssp             EEE------EEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEE-SCCCCC------------CCCSSCEEEEE
T ss_pred             ccc------ccccccccccccccccc-ccccccccccccccccccccccc-cccccc------------ccccccccccc
Confidence            221      34578899999999999 99999999999999999887543 112233            34568899999


Q ss_pred             EccCCCEEEEeC-CCeEEEEECCCC
Q 015363          349 FARNGRHILSRD-YMTLKLWDINMD  372 (408)
Q Consensus       349 ~spdg~~l~s~~-d~~v~~wd~~~~  372 (408)
                      |+|++++|++|+ |+.|++||+++.
T Consensus       232 ~s~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         232 WSPDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             ccccccceEEEcCCCEEEEEECCCC
Confidence            999999999985 799999999873

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-32  Score=244.85  Aligned_cols=256  Identities=13%  Similarity=0.186  Sum_probs=190.9

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|...|++++|+|++++|++|+.||.|++|+...++                       ....+.+|.           
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~-----------------------~~~~~~~h~-----------  163 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-----------------------IVMILQGHE-----------  163 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS-----------
T ss_pred             cCCCCCEEEEEECCCCCcceecccccccccccccccc-----------------------ccccccccc-----------
Confidence            3578889999999999999999999999999987664                       345677787           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeE-EccCCCeeeccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS-YMANGGCGERNF  190 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~l~~~~  190 (408)
                       ..|.++.|++  ++..+++++.++.+++||..+.........+...        +        .+. +.+++..+    
T Consensus       164 -~~v~~~~~~~--~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------~--------~~~~~~~~~~~l----  220 (388)
T d1erja_         164 -QDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV--------T--------TVAVSPGDGKYI----  220 (388)
T ss_dssp             -SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE--------E--------EEEECSTTCCEE----
T ss_pred             -cccccccccc--ccccccccccceeeeeeecccccccccccccccc--------c--------cccccCCCCCeE----
Confidence             7799999965  4779999999999999999988776655443221        1        233 34567766    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  269 (408)
                              ++++.|+.|++|+ ..................+|...|++++|+|++++|+++ .|+.|++||++.......
T Consensus       221 --------~~~~~d~~i~i~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  291 (388)
T d1erja_         221 --------AAGSLDRAVRVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD  291 (388)
T ss_dssp             --------EEEETTSCEEEEE-TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred             --------EEEcCCCeEEEee-cccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccc
Confidence                    8899999999999 543322221111122235788999999999999999999 999999999985433221


Q ss_pred             EeecC----CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363          270 IVDVK----PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS  345 (408)
Q Consensus       270 ~~~~~----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  345 (408)
                      .....    ......|...|++++|+|++ ++|++|+.||.|++||+++++.+    ..+.+|            .+.|.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~----~~l~~H------------~~~V~  354 (388)
T d1erja_         292 SKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPL----LMLQGH------------RNSVI  354 (388)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEE----EEEECC------------SSCEE
T ss_pred             cccccccceeeecccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEE----EEEeCC------------CCCEE
Confidence            10000    01245678899999999999 99999999999999999998664    666666            47788


Q ss_pred             EEE------EccCCCEEEEeC-CCeEEEEECC
Q 015363          346 DIK------FARNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       346 ~~~------~spdg~~l~s~~-d~~v~~wd~~  370 (408)
                      +++      |+|++.+|++|+ ||+|++|+++
T Consensus       355 ~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         355 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            886      467899999985 7999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-32  Score=235.40  Aligned_cols=275  Identities=14%  Similarity=0.174  Sum_probs=192.5

Q ss_pred             ccceEEEEECCCCCeEEEeecCCe-EEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGR-VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      ...+++++|+|+++.||.++.+.. |+.|+.....                     ......+.+|..           .
T Consensus        17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~gh~~-----------~   64 (325)
T d1pgua1          17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK---------------------VPPVVQFTGHGS-----------S   64 (325)
T ss_dssp             TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCS---------------------SCSEEEECTTTT-----------S
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC---------------------ccceEEEeCCCC-----------C
Confidence            345789999999999998875532 4445433222                     223455677742           5


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      .|++++|+|..++.+|++|+.||+|++||+..++.......+.........+.+.       .++|+++++.+..     
T Consensus        65 ~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~-------~v~~s~~~~~l~~-----  132 (325)
T d1pgua1          65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-------DISWDFEGRRLCV-----  132 (325)
T ss_dssp             CEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-------EEEECTTSSEEEE-----
T ss_pred             CEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEE-------EEEECCCCCccce-----
Confidence            6999999998888999999999999999997654322221111110111133444       7899999998721     


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCE-EEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                           ++.+.++.+.+|+ ..      ...+...+ .+|...|++++|+|++.. ++++ .|+.|++||....+..... 
T Consensus       133 -----~~~~~~~~~~~~~-~~------~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~-  198 (325)
T d1pgua1         133 -----VGEGRDNFGVFIS-WD------SGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-  198 (325)
T ss_dssp             -----EECCSSCSEEEEE-TT------TCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-
T ss_pred             -----eeccccceEEEEe-ec------ccccceee-eecccccccccccccccceEEEeecccccccccccccccceec-
Confidence                 2334567778777 22      13344443 789999999999999875 5566 8999999999844333322 


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                          .....|...|++++|+|++..+|++++.|+.|++||+++++.+    ..+.+|..        .+.+.+.++.| |
T Consensus       199 ----~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~----~~l~~~~~--------~v~~~~~s~~~-~  261 (325)
T d1pgua1         199 ----RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL----KYIEDDQE--------PVQGGIFALSW-L  261 (325)
T ss_dssp             ----CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE----EECCBTTB--------CCCSCEEEEEE-S
T ss_pred             ----ccccCCCCccEEeeeccccceeccccccccceeeeeecccccc----cccccccc--------ccccceeeeec-c
Confidence                2356788889999999985589999999999999999998654    66666631        12233444444 5


Q ss_pred             CCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc
Q 015363          352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       352 dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                      ||++|++++ |+.|+|||+++ +++++.+..|...
T Consensus       262 dg~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~~  295 (325)
T d1pgua1         262 DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQ  295 (325)
T ss_dssp             SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTC
T ss_pred             CCCEEEEEeCCCeEEEEECCC-CCEEEEEEecCCc
Confidence            889999885 79999999997 7999998887665

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-31  Score=238.49  Aligned_cols=303  Identities=10%  Similarity=0.101  Sum_probs=189.2

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      .+|.+.|.++++++  ++|+||+.|++|+|||..+.....                | .........|....      .+
T Consensus        11 ~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~----------------~-~~~~~~~~~~~~~~------~~   65 (393)
T d1sq9a_          11 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN----------------P-KDKSYSHFVHKSGL------HH   65 (393)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC----------------G-GGGEEEEECCTTCE------EE
T ss_pred             CcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc----------------c-cceeEeeeeccCCc------eE
Confidence            57999999999864  689999999999999977654210                0 00111122222100      00


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEE---EeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK---VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      ......+... ..++.++++++.||.|++|++.......   ........ .......++       .+.+.+++...  
T Consensus        66 ~~~~~~~~~~-~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~--  134 (393)
T d1sq9a_          66 VDVLQAIERD-AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD-SDMKKHSFW-------ALKWGASNDRL--  134 (393)
T ss_dssp             EEEEEEEETT-TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC-TTGGGSCEE-------EEEEECCC-----
T ss_pred             eeeEeeeccC-CCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceee-eccCCCceE-------EEEEecCCCcc--
Confidence            0111112211 1123467889999999999986432211   11111000 001112222       34555443211  


Q ss_pred             ccccccCccccCCCCCceeeeceeeecccccc------------ccccceeeccccccceEEEEeCCCCCEEEEe-cCCe
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNL------------VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR  255 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~  255 (408)
                           ...++++++.|+.+++|+ +.......            ....... ...+...+++++|+|++ +||+| .|++
T Consensus       135 -----~~~~~~~~~~dg~i~vw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~s~dg-~lasgs~Dg~  206 (393)
T d1sq9a_         135 -----LSHRLVATDVKGTTYIWK-FHPFADESNSLTLNWSPTLELQGTVES-PMTPSQFATSVDISERG-LIATGFNNGT  206 (393)
T ss_dssp             ------CEEEEEEETTSCEEEEE-EESSSSHHHHTTTCCCCEEEEEEEECC-SSSSCCCCCEEEECTTS-EEEEECTTSE
T ss_pred             -----cccEEEEEcCCCcEEEEE-eecCCcccceeeeeeccceecccceec-ccCCCCcEEEEEECCCC-EEEEEeCCCc
Confidence                 112247889999999999 53211100            0000111 13455668899999998 88888 9999


Q ss_pred             EEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEEEEcCCCceeccccccccccc-CC
Q 015363          256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQE-AP  331 (408)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~-~~  331 (408)
                      |++||+++.+ ....++.. ..+.+|...|++++|+|++ ++|++|+.|+   .|++||+++++..    ..+.... ..
T Consensus       207 i~iwd~~~~~-~~~~~~~~-~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~----~~l~~~~~~~  279 (393)
T d1sq9a_         207 VQISELSTLR-PLYNFESQ-HSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERI----GSLSVPTHSS  279 (393)
T ss_dssp             EEEEETTTTE-EEEEEECC-C---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEE----EEECBC----
T ss_pred             EEEEeecccc-cccccccc-cccccccceEEEccccccc-ceeeeecCCCCcceeeecccccceee----eeeccccccc
Confidence            9999999544 33332211 2467899999999999999 9999999887   5999999998654    3443221 12


Q ss_pred             CCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeeccccc
Q 015363          332 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR  386 (408)
Q Consensus       332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~  386 (408)
                      .....+.+|...|++++|+||+++|++|+ |++|++||+++ +++++++++|....
T Consensus       280 ~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~-g~~~~~l~gH~~~v  334 (393)
T d1sq9a_         280 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDI  334 (393)
T ss_dssp             ----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGC
T ss_pred             cceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC-CCEEEEECCcCCcc
Confidence            23344678899999999999999999996 79999999998 89999999998754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.8e-30  Score=224.99  Aligned_cols=295  Identities=13%  Similarity=0.208  Sum_probs=197.1

Q ss_pred             ceeeccce-EEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363           31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL  109 (408)
Q Consensus        31 ~~~h~~~V-~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  109 (408)
                      ..+|.+.| +|++|  ++++||||+.||+|+|||+.+++                       .+..+.+|.         
T Consensus         8 L~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~-----------------------~~~~l~~H~---------   53 (355)
T d1nexb2           8 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD---------   53 (355)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE-----------------------EEEEEECCS---------
T ss_pred             ECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEECCC---------
Confidence            45798875 67766  67899999999999999988665                       457789998         


Q ss_pred             ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc-----ccCCCCCeEee--cCCceeeEEccC
Q 015363          110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE-----KAAGNGPIFGS--HVSAIPKSYMAN  182 (408)
Q Consensus       110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~--~~~~~~~~~~~~  182 (408)
                         +.|++++|+|+   .+|++++.|++|++|+....+............     ...+++.....  .+..+.++..+.
T Consensus        54 ---~~V~~l~~s~~---~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~  127 (355)
T d1nexb2          54 ---GGVWALKYAHG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK  127 (355)
T ss_dssp             ---SCEEEEEEETT---TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC
T ss_pred             ---CCEEEEEEcCC---CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccC
Confidence               78999999752   489999999999999999887766554443321     01111111111  122222222222


Q ss_pred             CCeeecc-------------------------------cccccCccccCCCCCceeeeceeeeccccccccccceeeccc
Q 015363          183 GGCGERN-------------------------------FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA  231 (408)
Q Consensus       183 ~~~l~~~-------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  231 (408)
                      +..+...                               .......+++.+..++.+++|| +..      .+..... .+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d-~~~------~~~~~~~-~~  199 (355)
T d1nexb2         128 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWD-VAQ------MKCLYIL-SG  199 (355)
T ss_dssp             -----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEE-TTT------TEEEEEE-CC
T ss_pred             Cceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeee-ccc------ccceeee-ec
Confidence            1111000                               0001123455666677777777 322      1222222 56


Q ss_pred             cccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEE
Q 015363          232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  310 (408)
Q Consensus       232 ~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  310 (408)
                      +...+.++.++|++..++++ .|+.|++||+++.. ....       +.+|...|.++++++   ++|++|+.||.|++|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~-------~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iw  268 (355)
T d1nexb2         200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-LMYT-------LQGHTALVGLLRLSD---KFLVSAAADGSIRGW  268 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC-EEEE-------ECCCSSCCCEEEECS---SEEEEECTTSEEEEE
T ss_pred             cccccccccccccceeeecccccceEEeeeccccc-cccc-------ccccccccccccccc---ceeeeeecccccccc
Confidence            67788899999999999998 99999999999544 3332       578999999999863   589999999999999


Q ss_pred             EcCCCceecccccccccccCCCCccccccccceeEE-EEEccCCCEEEEeCCCeEEEEECCCCCCcee-eeeecccccce
Q 015363          311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHILSRDYMTLKLWDINMDSGPVA-TFQVHEHLRPK  388 (408)
Q Consensus       311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~-~~~~~~~~~~~  388 (408)
                      |+++...      .+..|.            ..+.. ..+++++++|++|+|+.|++||+++ +++++ .+.+|......
T Consensus       269 d~~~~~~------~~~~~~------------~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~t-g~~~~~~~~~~~~~V~~  329 (355)
T d1nexb2         269 DANDYSR------KFSYHH------------TNLSAITTFYVSDNILVSGSENQFNIYNLRS-GKLVHANILKDADQIWS  329 (355)
T ss_dssp             ETTTCCE------EEEEEC------------TTCCCCCEEEECSSEEEEEETTEEEEEETTT-CCBCCSCTTTTCSEEEE
T ss_pred             cccccce------eccccc------------CCceEEEEEcCCCCEEEEEeCCEEEEEECCC-CCEEEEEecCCCCCEEE
Confidence            9987753      333442            33333 4577899999999999999999998 67775 56777776655


Q ss_pred             EEecCCCeee-eeecee
Q 015363          389 VMHSSKNYFM-GLDNIH  404 (408)
Q Consensus       389 ~~~~~~~~~~-~~d~~~  404 (408)
                      +.. ..+.++ +..+..
T Consensus       330 v~~-~~~~~~~~~s~dg  345 (355)
T d1nexb2         330 VNF-KGKTLVAAVEKDG  345 (355)
T ss_dssp             EEE-ETTEEEEEEESSS
T ss_pred             EEE-cCCeEEEEEECCC
Confidence            543 334443 334433

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-29  Score=218.69  Aligned_cols=255  Identities=16%  Similarity=0.281  Sum_probs=201.2

Q ss_pred             cccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcccee
Q 015363           14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK   93 (408)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~   93 (408)
                      -..|++...  + .......|.+.|.+++|+|++.+++++..++.+.+|+......                       .
T Consensus        41 i~iWd~~~~--~-~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~   94 (317)
T d1vyhc1          41 IKVWDYETG--D-FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC-----------------------I   94 (317)
T ss_dssp             EEEEETTTC--C-CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE-----------------------E
T ss_pred             EEEEECCCC--C-EEEEEeCCCCcEEEEeeeccccccccccccccccccccccccc-----------------------c
Confidence            345665531  1 1223456999999999999999999999999999999765542                       3


Q ss_pred             eeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCC
Q 015363           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS  173 (408)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  173 (408)
                      ..+.+|.            ..+.++.|+|+  +..+++++.|+.+++||+++++....+..+..        .+.     
T Consensus        95 ~~~~~~~------------~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--------~~~-----  147 (317)
T d1vyhc1          95 RTMHGHD------------HNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--------WVR-----  147 (317)
T ss_dssp             ECCCCCS------------SCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSS--------CEE-----
T ss_pred             ccccccc------------ccceeeeccCC--CceEEeeccCcceeEeecccceeeeEEccCCC--------cce-----
Confidence            4456666            66999999755  77999999999999999999988777665432        232     


Q ss_pred             ceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC--------
Q 015363          174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--------  245 (408)
Q Consensus       174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--------  245 (408)
                        .+++++++..+            ++++.|+.|++|+ +..      ......+ ..|...+.+++++|++        
T Consensus       148 --~~~~~~~~~~l------------~~~~~d~~v~~~~-~~~------~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~  205 (317)
T d1vyhc1         148 --MVRPNQDGTLI------------ASCSNDQTVRVWV-VAT------KECKAEL-REHRHVVECISWAPESSYSSISEA  205 (317)
T ss_dssp             --EEEECTTSSEE------------EEEETTSCEEEEE-TTT------CCEEEEE-CCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             --eeecccCCCEE------------EEEeCCCeEEEEe-ecc------ceeeEEE-ecCCCCceEEEEeeccccceeecc
Confidence              68899999987            9999999999999 433      2222332 6677788888887753        


Q ss_pred             ------------CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363          246 ------------ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM  312 (408)
Q Consensus       246 ------------~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  312 (408)
                                  ..++++ .|+.|++||+++ ...+..       +.+|...|.+++|+|++ ++|++|+.||.|++||+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~-------~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~  276 (317)
T d1vyhc1         206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMT-------LVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDY  276 (317)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTT-TEEEEE-------EECCSSCEEEEEECSSS-SCEEEEETTTEEEEECC
T ss_pred             ccceeeeeccCCceeEeccCCCEEEEEECCC-CcEEEE-------EeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEEC
Confidence                        467777 899999999994 444433       56789999999999999 99999999999999999


Q ss_pred             CCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEE
Q 015363          313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWD  368 (408)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd  368 (408)
                      ++++.+    ..+.+|            ...|++++|+|++++|++|+ |++|++||
T Consensus       277 ~~~~~~----~~~~~h------------~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         277 KNKRCM----KTLNAH------------EHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             TTSCCC----EEEECC------------SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCcEE----EEEcCC------------CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            988654    566666            47899999999999999985 79999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.7e-30  Score=222.00  Aligned_cols=256  Identities=17%  Similarity=0.227  Sum_probs=178.6

Q ss_pred             eee-ccceEEEEECC--CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           32 VQE-VDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        32 ~~h-~~~V~~~~~s~--~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      .+| ...|++++|+|  ++++||+|+.||+|+|||+..+...    ..           ........+..|.        
T Consensus        59 ~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~----~~-----------~~~~~~~~~~~~~--------  115 (325)
T d1pgua1          59 TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES----NS-----------VEVNVKSEFQVLA--------  115 (325)
T ss_dssp             CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG----TE-----------EEEEEEEEEECCS--------
T ss_pred             eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcce----ee-----------eeccccccccccc--------
Confidence            345 56899999998  5789999999999999998765431    00           0111122345565        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEe--CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          109 LEIEEKINKIRWCQSANSALYLLST--NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                          .+|.+++|+|  +++++++++  .++.+++|+.++++....+..+..        .+.       ++.|+|++..+
T Consensus       116 ----~~v~~v~~s~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--------~v~-------~~~~~~~~~~~  174 (325)
T d1pgua1         116 ----GPISDISWDF--EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ--------RIN-------ACHLKQSRPMR  174 (325)
T ss_dssp             ----SCEEEEEECT--TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS--------CEE-------EEEECSSSSCE
T ss_pred             ----CcEEEEEECC--CCCccceeeccccceEEEEeecccccceeeeeccc--------ccc-------cccccccccce
Confidence                7799999965  488888775  577899999999887777655432        343       68899998764


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCC
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEIS  264 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~  264 (408)
                                 +++++.|+.+++|+ ....+..   ..... ...|...|++++|+|+ +.+|+++ .|+.|++||+++.
T Consensus       175 -----------~~~~~~d~~v~~~d-~~~~~~~---~~~~~-~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~  238 (325)
T d1pgua1         175 -----------SMTVGDDGSVVFYQ-GPPFKFS---ASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG  238 (325)
T ss_dssp             -----------EEEEETTTEEEEEE-TTTBEEE---EEECS-SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred             -----------EEEeeccccccccc-ccccccc---eeccc-ccCCCCccEEeeeccccceeccccccccceeeeeeccc
Confidence                       37789999999999 4322111   11111 2577788999999997 5788888 9999999999844


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEc---CCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFH---PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII  341 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  341 (408)
                       +....       +.+|...+..+.|+   |++ ++|++++.|+.|+|||+++++.+    +.+..+...        ..
T Consensus       239 -~~~~~-------l~~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~~~~~----~~~~~~~~~--------~~  297 (325)
T d1pgua1         239 -EFLKY-------IEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKCV----QKWTLDKQQ--------LG  297 (325)
T ss_dssp             -CEEEE-------CCBTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTTTEEE----EEEECCTTC--------GG
T ss_pred             -ccccc-------ccccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCCCCEE----EEEEecCCc--------cc
Confidence             44433       45566555544444   677 89999999999999999998654    444444211        01


Q ss_pred             ceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363          342 ASISDIKFARNGRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       342 ~~i~~~~~spdg~~l~s~~-d~~v~~wd~  369 (408)
                      ....++.|.+++ +|++++ |+.|++||+
T Consensus       298 ~~~~~~~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         298 NQQVGVVATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred             CeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence            223344555544 667765 799999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=8.1e-30  Score=225.75  Aligned_cols=249  Identities=12%  Similarity=0.105  Sum_probs=185.1

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ++|+|++|+|  +|++||+|+.|+.|++||+.+++.........+      .+.|.       +++|+|+++++      
T Consensus         8 ~pIt~~~~s~--dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH------~~~V~-------~l~fsp~~~~l------   66 (371)
T d1k8kc_           8 EPISCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH------NGQVT-------GVDWAPDSNRI------   66 (371)
T ss_dssp             SCCCEEEECT--TSSEEEEECSSSEEEEEEEETTEEEEEEEEECC------SSCEE-------EEEEETTTTEE------
T ss_pred             CCeEEEEECC--CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCC------CCCEE-------EEEECCCCCEE------
Confidence            6799999965  488999999999999999988765444333222      23455       78999999998      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                            ++++.|+.|++|+ +.....    .+... ...|...|++++|+|+++.|+++ .|+.|++|+++.........
T Consensus        67 ------~s~s~D~~i~vWd-~~~~~~----~~~~~-~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~  134 (371)
T d1k8kc_          67 ------VTCGTDRNAYVWT-LKGRTW----KPTLV-ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK  134 (371)
T ss_dssp             ------EEEETTSCEEEEE-EETTEE----EEEEE-CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred             ------EEEECCCeEEEEe-eccccc----ccccc-cccccccccccccccccccceeecccCcceeeeeeccccccccc
Confidence                  9999999999999 543221    11222 36788899999999999999999 89999999988554432221


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC--CCCccccccccceeEEEEE
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA--PGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~~~  349 (408)
                      .    ....|...|.+++|+|++ .+|++|+.|++|++||+..................  ........+|...|.+++|
T Consensus       135 ~----~~~~~~~~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  209 (371)
T d1k8kc_         135 H----IKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF  209 (371)
T ss_dssp             E----ECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred             c----cccccccccccccccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe
Confidence            1    256788999999999999 99999999999999998765432111111001100  1112234567889999999


Q ss_pred             ccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeee
Q 015363          350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGL  400 (408)
Q Consensus       350 spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (408)
                      +|+|++|++++ |+.|++||+.+ ++.+..+..|......+....++.+++.
T Consensus       210 s~~g~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~s~~fs~d~~~la~  260 (371)
T d1k8kc_         210 SANGSRVAWVSHDSTVCLADADK-KMAVATLASETLPLLAVTFITESSLVAA  260 (371)
T ss_dssp             CSSSSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred             ecccccccccccCCcceEEeeec-ccceeeeecccccceeeeecCCCCEEEE
Confidence            99999999985 79999999997 7999999999887666655555665544

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.9e-29  Score=219.73  Aligned_cols=285  Identities=11%  Similarity=0.076  Sum_probs=191.6

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      +.+|.+.|++|+|+|++++||+|+.||+|+|||+.+....                   . .+....+|.          
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~-------------------~-~~~~~~~h~----------   56 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-------------------V-DLLQSLRYK----------   56 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-------------------E-EEEEEEECS----------
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc-------------------e-EEEEecCCC----------
Confidence            3579999999999999999999999999999999765421                   1 112233576          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        .+|.+++|+|+ ++.+|++|+.|+.|++|++................       ..       ...+.++...+    
T Consensus        57 --~~V~~v~f~~~-~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~-------~~-------~~~~~~~~~~~----  115 (342)
T d1yfqa_          57 --HPLLCCNFIDN-TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL-------GI-------CRICKYGDDKL----  115 (342)
T ss_dssp             --SCEEEEEEEES-SSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCS-------CE-------EEEEEETTTEE----
T ss_pred             --CCEEEEEEeCC-CCCEEEEcccccceeeeeccccccccccccccccc-------cc-------ccccccccccc----
Confidence              77999999875 34589999999999999999876655544432221       11       34455566665    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceee-ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF  268 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  268 (408)
                              ++++.++.+++|| +.........  .... ..........+.+.+.+..++++ .|+.|++||+.......
T Consensus       116 --------~~~~~~~~~~~wd-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  184 (342)
T d1yfqa_         116 --------IAASWDGLIEVID-PRNYGDGVIA--VKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN  184 (342)
T ss_dssp             --------EEEETTSEEEEEC-HHHHTTBCEE--EEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC
T ss_pred             --------cccccccccceee-ccccccceee--ecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc
Confidence                    8889999999999 5432211110  0000 01112234456677788889998 99999999998554433


Q ss_pred             eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363          269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  348 (408)
                      ....     ...+...+.+..+.|.....+++++.||.+.+|+................ ..........+|...|++++
T Consensus       185 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~  258 (342)
T d1yfqa_         185 GTIE-----ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF-RCHRLNLKDTNLAYPVNSIE  258 (342)
T ss_dssp             CEEE-----ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE-ECCCCCTTCCSSCCCEEEEE
T ss_pred             eeee-----ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee-eeeeeccCCCcccccceeEE
Confidence            2211     22334456666666654488999999999999998765332110000000 00111122345667899999


Q ss_pred             EccCCCEEEEeC-CCeEEEEECCCCCCceeeeeeccc
Q 015363          349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       349 ~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                      |+|++++|++|+ ||.|++||+++ ++.++++..+..
T Consensus       259 ~sp~~~~lasg~~Dg~v~vWD~~~-~~~l~~~~~~~~  294 (342)
T d1yfqa_         259 FSPRHKFLYTAGSDGIISCWNLQT-RKKIKNFAKFNE  294 (342)
T ss_dssp             ECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSS
T ss_pred             ecCCccEEEEECCCCEEEEEECCC-CcEEEEecCCCC
Confidence            999999999985 79999999998 688888865443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.8e-28  Score=213.84  Aligned_cols=253  Identities=18%  Similarity=0.298  Sum_probs=191.1

Q ss_pred             ccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeE
Q 015363           89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF  168 (408)
Q Consensus        89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  168 (408)
                      ..+....++||.            +.|++++|+|+  +.+|++|+.||+|++||+.+++....+..+..        .+.
T Consensus        44 ~~~~~~tL~GH~------------~~I~~l~~s~~--~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~--------~v~  101 (340)
T d1tbga_          44 QMRTRRTLRGHL------------AKIYAMHWGTD--SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS--------WVM  101 (340)
T ss_dssp             CCCEEEEECCCS------------SCEEEEEECTT--SSEEEEEETTTEEEEEETTTTEEEEEEECSCS--------CEE
T ss_pred             ceeeeEEECCCC------------CCEEEEEECCC--CCEEEEEECCCceeeeecccceeEEEEecccc--------cEE
Confidence            445667899999            78999999754  88999999999999999999988887766532        344


Q ss_pred             eecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccccc----------------------------
Q 015363          169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL----------------------------  220 (408)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------------  220 (408)
                             +++|+|++..+            ++++.++.+.+|+ ........                            
T Consensus       102 -------~v~~~~~~~~l------------~~~~~d~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (340)
T d1tbga_         102 -------TCAYAPSGNYV------------ACGGLDNICSIYN-LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS  161 (340)
T ss_dssp             -------EEEECTTSSEE------------EEEETTCCEEEEE-SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEE
T ss_pred             -------eeEeeccceee------------eeecccceeeccc-ccccccccccceeccccccccccccccccccccccc
Confidence                   68999999987            8888888888887 32211000                            


Q ss_pred             ----------ccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEE
Q 015363          221 ----------VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE  289 (408)
Q Consensus       221 ----------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  289 (408)
                                ...........+...+....+.+.+.+++++ .|+.|++||+++ ......       +.+|...|++++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~-~~~~~~-------~~~h~~~i~~v~  233 (340)
T d1tbga_         162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQT-------FTGHESDINAIC  233 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEE-------ECCCSSCEEEEE
T ss_pred             ccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCC-CcEEEE-------EeCCCCCeEEEE
Confidence                      0000001113345567788889999999999 999999999984 444433       577999999999


Q ss_pred             EcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEE
Q 015363          290 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWD  368 (408)
Q Consensus       290 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd  368 (408)
                      |+|++ .+|++|+.|+.|++||++.....    ..+...          .+...|.+++|+|++++|++|+ |+.|++||
T Consensus       234 ~~p~~-~~l~s~s~d~~i~~~~~~~~~~~----~~~~~~----------~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd  298 (340)
T d1tbga_         234 FFPNG-NAFATGSDDATCRLFDLRADQEL----MTYSHD----------NIICGITSVSFSKSGRLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             ECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECCT----------TCCSCEEEEEECSSSCEEEEEETTSCEEEEE
T ss_pred             ECCCC-CEEEEEeCCCeEEEEeecccccc----cccccc----------cccCceEEEEECCCCCEEEEEECCCEEEEEE
Confidence            99999 99999999999999999987543    222211          1236799999999999999985 69999999


Q ss_pred             CCCCCCceeeeeecccccceEEecCCCeeee---eeceeeec
Q 015363          369 INMDSGPVATFQVHEHLRPKVMHSSKNYFMG---LDNIHTLY  407 (408)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~  407 (408)
                      +.+ ++++.++.+|......+....++..++   .|...+||
T Consensus       299 ~~~-~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         299 ALK-ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             TTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CCC-CcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            997 799999999998877776544554432   35555554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9e-30  Score=217.23  Aligned_cols=256  Identities=14%  Similarity=0.119  Sum_probs=170.9

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.++|++++|+|    |+||+.||+|++||+.+.                            .++|.          
T Consensus         9 l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~----------------------------~~~h~----------   46 (287)
T d1pgua2           9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM----------------------------HQDHS----------   46 (287)
T ss_dssp             ECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE----------------------------ECCCC----------
T ss_pred             ECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC----------------------------CCCCC----------
Confidence            457999999999987    999999999999996533                            34666          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE---EEEeccCCCCcccCCCCCeE-eecCCceeeEEccCCCee
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDWNVHPEKAAGNGPIF-GSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~l  186 (408)
                        ..|.++.|++   +..+++++.|+++++|++...+.   .......       +++... ........+....++..+
T Consensus        47 --~~V~~~~~~~---~~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  114 (287)
T d1pgua2          47 --NLIVSLDNSK---AQEYSSISWDDTLKVNGITKHEFGSQPKVASAN-------NDGFTAVLTNDDDLLILQSFTGDII  114 (287)
T ss_dssp             --SCEEEEECCS---TTCCEEEETTTEEEETTEEEEECSSCEEEEEEC-------SSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             --CCEEEEEecC---CCeEEEEeeccccccccccccccccceeeeeec-------cCCceEEEeecccceeeeccceeee
Confidence              6689999853   34688899999999998764321   1111111       111111 111222223333333333


Q ss_pred             ecccccc-------cCccccCC-CCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEE
Q 015363          187 ERNFGCA-------SNDSSFPP-GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRIN  257 (408)
Q Consensus       187 ~~~~~~~-------~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~  257 (408)
                      ..+....       ....++.+ ..++.+++|+ +....      ........|...+++++|+|++.+|++| .|+.|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~-~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~  187 (287)
T d1pgua2         115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFK-LSDLE------VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKIL  187 (287)
T ss_dssp             EEEECSSCEEEEEECSSEEEEEETTTSCEEEEE-TTEEE------EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeccccceeeeeeccCcceeeeccccceeeeee-ccccc------eeeeeeeccCCceeEEEeccCcccccccccccccc
Confidence            3221110       11222444 4456799998 43221      1112224567789999999999999999 999999


Q ss_pred             EEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC---------CceEEEEeCCCeEEEEEcCCCceecccccccccc
Q 015363          258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH---------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ  328 (408)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  328 (408)
                      +||+.+......       .+..|...|.+++|+|.+         ..+|++|+.|+.|++||+++....   +..+.+|
T Consensus       188 i~d~~~~~~~~~-------~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~---~~~~~~h  257 (287)
T d1pgua2         188 LYDLQSREVKTS-------RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI---IKALNAH  257 (287)
T ss_dssp             EEETTTTEEEEC-------CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC---EEETTSS
T ss_pred             ceeecccccccc-------cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE---EEEeCCC
Confidence            999985443322       267899999999998854         258999999999999999875322   2444444


Q ss_pred             cCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEEC
Q 015363          329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI  369 (408)
Q Consensus       329 ~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~  369 (408)
                                  ...|++++|+|++.++.++.|+.|++|++
T Consensus       258 ------------~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         258 ------------KDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             ------------TTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             ------------CCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence                        57899999999986554557899999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-27  Score=208.88  Aligned_cols=292  Identities=12%  Similarity=0.231  Sum_probs=192.9

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ..+|.+.|.+ +++++|++||||+.||+|+|||+.+++                       ++..+.+|.          
T Consensus        12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~-----------------------~~~~~~~h~----------   57 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-----------------------CLRTLVGHT----------   57 (342)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-----------------------EEEECCCCS----------
T ss_pred             ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-----------------------EEEEEeCCC----------
Confidence            4589999865 355679999999999999999988765                       456788998          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcc---cCCCCCeEeecCCceeeEEccCCCeee
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEK---AAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                        ..|.+++|+|    .+|++++.|+.+++|+..................   ...........+....+.....++...
T Consensus        58 --~~V~~v~~~~----~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  131 (342)
T d2ovrb2          58 --GGVWSSQMRD----NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH  131 (342)
T ss_dssp             --SCEEEEEEET----TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEE
T ss_pred             --CCEEEEEeCC----CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeeccccccee
Confidence              7799999963    2999999999999999988766554443332210   000000111112222222222222222


Q ss_pred             cccc--------cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEE
Q 015363          188 RNFG--------CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINL  258 (408)
Q Consensus       188 ~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~i  258 (408)
                      .+..        ......++.++.++.+++|+ ...      ..+...+ .+|...+..+.  +++..++++ .|+.|++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d-~~~------~~~~~~~-~~~~~~~~~~~--~~~~~l~s~~~dg~i~~  201 (342)
T d2ovrb2         132 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD-PET------ETCLHTL-QGHTNRVYSLQ--FDGIHVVSGSLDTSIRV  201 (342)
T ss_dssp             EEECCSSCEEEEEECSSCEEEEETTSCEEEEE-GGG------TEEEEEE-CCCSSCEEEEE--ECSSEEEEEETTSCEEE
T ss_pred             eeecccccceeeccccceeeeecCCCeEEEee-ccc------ceeeEEE-cCccccccccc--CCCCEEEEEeCCCeEEE
Confidence            1111        11223457788999999999 432      2233333 56666655544  467899998 9999999


Q ss_pred             EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc
Q 015363          259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT  338 (408)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (408)
                      ||++.. .....       +..|...+.+++++  + ++|++++.|+.|++||+...+..    ..+..+         .
T Consensus       202 ~d~~~~-~~~~~-------~~~~~~~v~~~~~~--~-~~l~s~s~d~~i~iwd~~~~~~~----~~~~~~---------~  257 (342)
T d2ovrb2         202 WDVETG-NCIHT-------LTGHQSLTSGMELK--D-NILVSGNADSTVKIWDIKTGQCL----QTLQGP---------N  257 (342)
T ss_dssp             EETTTC-CEEEE-------ECCCCSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEE----EEECST---------T
T ss_pred             eecccc-eeeeE-------ecccccceeEEecC--C-CEEEEEcCCCEEEEEeccccccc----cccccc---------c
Confidence            999944 44433       56788888888776  4 58999999999999999987543    333333         2


Q ss_pred             cccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeee-----cccccceEEecCCCeeee
Q 015363          339 EIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQV-----HEHLRPKVMHSSKNYFMG  399 (408)
Q Consensus       339 ~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  399 (408)
                      .|...+.++.++  +.++++|+ ||+|++||+++ +++++.+..     |......+....++.+++
T Consensus       258 ~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~t-g~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la  321 (342)
T d2ovrb2         258 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTKLVCA  321 (342)
T ss_dssp             SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred             eeeeceeecccC--CCeeEEEcCCCEEEEEECCC-CCEEEEEecccCCCCCCCEEEEEECCCCCEEE
Confidence            234667777665  56888885 79999999998 788888753     444455554434444443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=4e-28  Score=208.15  Aligned_cols=245  Identities=11%  Similarity=0.114  Sum_probs=174.4

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|.+.|++++|+|++++ ++++.|+.+++|+.......                    ........+.           
T Consensus        52 ~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~--------------------~~~~~~~~~~-----------   99 (299)
T d1nr0a2          52 DVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVD--------------------SSKAVANKLS-----------   99 (299)
T ss_dssp             CSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSC--------------------TTSCCEEECS-----------
T ss_pred             CCCCCcEEEEEeecccee-ecccceeeEEEeccCCcccc--------------------cccccccccc-----------
Confidence            368999999999999985 55667899999997654321                    0011122333           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       ..+.+++|+|  ++.+++ ++.++.+++|+....  .......          ..       ..++++|+++.+     
T Consensus       100 -~~~~~~~~s~--~g~~~~-~~~~~~i~~~~~~~~--~~~~~~~----------~~-------~~~~~s~~~~~l-----  151 (299)
T d1nr0a2         100 -SQPLGLAVSA--DGDIAV-AACYKHIAIYSHGKL--TEVPISY----------NS-------SCVALSNDKQFV-----  151 (299)
T ss_dssp             -SCEEEEEECT--TSSCEE-EEESSEEEEEETTEE--EEEECSS----------CE-------EEEEECTTSCEE-----
T ss_pred             -cccccccccc--cccccc-ccccccccccccccc--ccccccc----------cc-------cccccccccccc-----
Confidence             5688999965  476554 455678999985432  2221111          11       167899999987     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             ++++.++.|++|| +.....      .......|...|++++|+|++++|+++ .|+.|++||+.+.......
T Consensus       152 -------~~g~~dg~i~~~d-~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  217 (299)
T d1nr0a2         152 -------AVGGQDSKVHVYK-LSGASV------SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT  217 (299)
T ss_dssp             -------EEEETTSEEEEEE-EETTEE------EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred             -------ccccccccccccc-cccccc------ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                   8999999999999 544221      112235778899999999999999999 8999999999854433222


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                           ..+..|...|++++|+|++ .+|++|+.|+.|++||++++...  +......+           +...|..+.| 
T Consensus       218 -----~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~~--~~~~~~~~-----------~~~~v~~~~~-  277 (299)
T d1nr0a2         218 -----NSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDH--PIIIKGAH-----------AMSSVNSVIW-  277 (299)
T ss_dssp             -----CCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSC--CEEETTSS-----------TTSCEEEEEE-
T ss_pred             -----ccccccccccccccccccc-cceEEEcCCCEEEEEECCCCCcc--eEEEecCC-----------CCCcEEEEEE-
Confidence                 2367789999999999999 99999999999999999876532  11111222           2345776665 


Q ss_pred             cCCCEEEEeC-CCeEEEEECC
Q 015363          351 RNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       351 pdg~~l~s~~-d~~v~~wd~~  370 (408)
                      +++.+|++|+ |+.|++||+.
T Consensus       278 ~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         278 LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EETTEEEEEETTSCEEEEECC
T ss_pred             CCCCEEEEEeCCCEEEEEecc
Confidence            5567888874 7999999984

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.7e-28  Score=206.29  Aligned_cols=266  Identities=14%  Similarity=0.244  Sum_probs=175.9

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      ..|...|+|++|  +|++||||+.||+|+|||+.+++                       .+..+.+|.           
T Consensus        12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~-----------------------~~~~l~~H~-----------   55 (293)
T d1p22a2          12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----------------------CKRILTGHT-----------   55 (293)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----------------------EEEEECCCS-----------
T ss_pred             CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEecCC-----------
Confidence            357889999875  78999999999999999988665                       457788998           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc--ccCCCCCeEeec-CCceeeEEccCCCee--
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE--KAAGNGPIFGSH-VSAIPKSYMANGGCG--  186 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~-~~~~~~~~~~~~~~l--  186 (408)
                       ..|++++|  +  +++|++|+.|+.|++|++..+.............  .......+.... .....+.........  
T Consensus        56 -~~V~~v~~--~--~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (293)
T d1p22a2          56 -GSVLCLQY--D--ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL  130 (293)
T ss_dssp             -SCEEEEEC--C--SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEE
T ss_pred             -CCEeeeec--c--cceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccc
Confidence             77999988  3  5699999999999999999887666555443331  111111111111 111112111111100  


Q ss_pred             -ecccc--------cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeE
Q 015363          187 -ERNFG--------CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRI  256 (408)
Q Consensus       187 -~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i  256 (408)
                       ..+..        ......+++++.|+.+++|+ +..      .++...+ .++...+..+.++  +..++++ .|+.|
T Consensus       131 ~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d-~~~------~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i  200 (293)
T d1p22a2         131 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN-TST------CEFVRTL-NGHKRGIACLQYR--DRLVVSGSSDNTI  200 (293)
T ss_dssp             EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE-TTT------CCEEEEE-ECCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred             cccccccccccccceecccccccccCCCceeeec-CCC------CcEEEEE-cccccccccccCC--CCeEEEecCCCEE
Confidence             00000        11223356788899999999 433      2233333 6677778777765  5688888 99999


Q ss_pred             EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccc
Q 015363          257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF  336 (408)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  336 (408)
                      ++||+++.. ....       ..++...+..  +++++ .+|++|+.||.|++||+......    ..   .........
T Consensus       201 ~i~d~~~~~-~~~~-------~~~~~~~v~~--~~~~~-~~l~sg~~dg~i~iwd~~~~~~~----~~---~~~~~~~~~  262 (293)
T d1p22a2         201 RLWDIECGA-CLRV-------LEGHEELVRC--IRFDN-KRIVSGAYDGKIKVWDLVAALDP----RA---PAGTLCLRT  262 (293)
T ss_dssp             EEEETTTCC-EEEE-------ECCCSSCEEE--EECCS-SEEEEEETTSCEEEEEHHHHTST----TS---CTTTTEEEE
T ss_pred             EEEecccce-eeee-------ecccceeeee--ccccc-eEEEEEcCCCEEEEEECCCCccc----cc---cCCceeeEE
Confidence            999999544 3333       4556666654  55667 88999999999999998765321    10   111112233


Q ss_pred             cccccceeEEEEEccCCCEEEEeC-CCeEEEEE
Q 015363          337 FTEIIASISDIKFARNGRHILSRD-YMTLKLWD  368 (408)
Q Consensus       337 ~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd  368 (408)
                      +.+|.+.|.+++|+  +.+|++|+ |++|++||
T Consensus       263 ~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         263 LVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             ecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            55677899999984  57899986 79999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.8e-25  Score=189.75  Aligned_cols=289  Identities=11%  Similarity=0.122  Sum_probs=181.5

Q ss_pred             cccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccc--
Q 015363           14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR--   91 (408)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--   91 (408)
                      -..|+...  ++ ......+|.+.|.+++|+|+  +|++|+.|+.+++|+.................. .....+...  
T Consensus        39 i~vWd~~~--~~-~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  112 (342)
T d2ovrb2          39 LKVWSAVT--GK-CLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVR-CMHLHEKRVVS  112 (342)
T ss_dssp             EEEEETTT--CC-EEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTEEEE
T ss_pred             EEEEECCC--CC-EEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEe-eeecccccccc
Confidence            44576643  11 11234579999999999875  899999999999999876542100000000000 000000000  


Q ss_pred             -----eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCC
Q 015363           92 -----YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP  166 (408)
Q Consensus        92 -----~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  166 (408)
                           .+..+.......  ...+.. .......+.+.  ...+++++.|+.|++||....+....+..+...        
T Consensus       113 ~~~d~~i~~~~~~~~~~--~~~~~~-~~~~~~~~~~~--~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------  179 (342)
T d2ovrb2         113 GSRDATLRVWDIETGQC--LHVLMG-HVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR--------  179 (342)
T ss_dssp             EETTSEEEEEESSSCCE--EEEEEC-CSSCEEEEEEC--SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC--------
T ss_pred             cccceeEEEeecccccc--eeeeec-ccccceeeccc--cceeeeecCCCeEEEeecccceeeEEEcCcccc--------
Confidence                 000000000000  000000 00111222222  457888889999999999888777666554332        


Q ss_pred             eEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC
Q 015363          167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE  246 (408)
Q Consensus       167 v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  246 (408)
                               ...+.+++..+            ++++.|+.|++|| +..      ..+...+ ..|...+.++++++  +
T Consensus       180 ---------~~~~~~~~~~l------------~s~~~dg~i~~~d-~~~------~~~~~~~-~~~~~~v~~~~~~~--~  228 (342)
T d2ovrb2         180 ---------VYSLQFDGIHV------------VSGSLDTSIRVWD-VET------GNCIHTL-TGHQSLTSGMELKD--N  228 (342)
T ss_dssp             ---------EEEEEECSSEE------------EEEETTSCEEEEE-TTT------CCEEEEE-CCCCSCEEEEEEET--T
T ss_pred             ---------cccccCCCCEE------------EEEeCCCeEEEee-ccc------ceeeeEe-cccccceeEEecCC--C
Confidence                     34566677776            9999999999999 433      2333443 77888888887764  6


Q ss_pred             EEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccc
Q 015363          247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF  325 (408)
Q Consensus       247 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  325 (408)
                      +|+++ .|+.|++||+.........     .....|...+.++.++  + .++++|+.||.|++||+++++.+    +.+
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~-~~~~s~s~Dg~i~iwd~~tg~~i----~~~  296 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQTL-----QGPNKHQSAVTCLQFN--K-NFVITSSDDGTVKLWDLKTGEFI----RNL  296 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEE-----CSTTSCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCCEE----EEE
T ss_pred             EEEEEcCCCEEEEEecccccccccc-----cccceeeeceeecccC--C-CeeEEEcCCCEEEEEECCCCCEE----EEE
Confidence            89998 9999999999855443332     1244567777777775  4 57999999999999999998765    333


Q ss_pred             ccccCCCCccccccccceeEEEEEccCCCEEEEeC-CC----eEEEEECCC
Q 015363          326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM----TLKLWDINM  371 (408)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~----~v~~wd~~~  371 (408)
                      ....       ..+|...|++++|+|++.+|++|+ ||    .|++||++.
T Consensus       297 ~~~~-------~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         297 VTLE-------SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EECT-------TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             eccc-------CCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            3221       234567899999999999999985 56    499999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.3e-25  Score=200.09  Aligned_cols=246  Identities=12%  Similarity=0.113  Sum_probs=160.9

Q ss_pred             CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCC-
Q 015363           47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN-  125 (408)
Q Consensus        47 ~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~-  125 (408)
                      +.++++++.||.|++|++..........                  ......       +.....+..+..++|.+..+ 
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~------------------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  133 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVI------------------FEKLDL-------LDSDMKKHSFWALKWGASNDR  133 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEE------------------EEEECC-------SCTTGGGSCEEEEEEECCC--
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeee------------------ccccce-------eeeccCCCceEEEEEecCCCc
Confidence            4578899999999999987554310000                  000000       01111224577888876532 


Q ss_pred             --CcEEEEEeCCCeEEEEEcCCCcE------------EEE-eccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          126 --SALYLLSTNDKTIKLWKVQEKKV------------KKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       126 --~~~l~~~~~d~~i~vwd~~~~~~------------~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                        +.++++++.||++++|++.....            ... .....   .......+       .+++++|++ .+    
T Consensus       134 ~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~v~~s~dg-~l----  198 (393)
T d1sq9a_         134 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES---PMTPSQFA-------TSVDISERG-LI----  198 (393)
T ss_dssp             --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECC---SSSSCCCC-------CEEEECTTS-EE----
T ss_pred             ccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceec---ccCCCCcE-------EEEEECCCC-EE----
Confidence              46889999999999999853210            000 00000   00011112       268889987 44    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC---eEEEEeCCCCCc
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL---RINLWNLEISNQ  266 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~---~i~iwd~~~~~~  266 (408)
                              ++++.|+.|++|| +...+.......... +.+|...|++++|+|++++|++| .|+   .|++||++++. 
T Consensus       199 --------asgs~Dg~i~iwd-~~~~~~~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~-  267 (393)
T d1sq9a_         199 --------ATGFNNGTVQISE-LSTLRPLYNFESQHS-MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-  267 (393)
T ss_dssp             --------EEECTTSEEEEEE-TTTTEEEEEEECCC----CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-
T ss_pred             --------EEEeCCCcEEEEe-ecccccccccccccc-cccccceEEEcccccccceeeeecCCCCcceeeecccccce-
Confidence                    8999999999999 544333222233333 36899999999999999999998 665   59999999544 


Q ss_pred             eeeEeecC------CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          267 SFNIVDVK------PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       267 ~~~~~~~~------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      ....+...      ...+.+|...|++++|+|++ ++|++|+.|++|++||+++++.+    .++.+|.           
T Consensus       268 ~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~vWd~~~g~~~----~~l~gH~-----------  331 (393)
T d1sq9a_         268 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERI----TTLNMHC-----------  331 (393)
T ss_dssp             EEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEE----EEEECCG-----------
T ss_pred             eeeeeccccccccceeeeecccCceeeeccCCCC-CeeEEECCCCEEEEEECCCCCEE----EEECCcC-----------
Confidence            33332211      12346899999999999999 99999999999999999999665    7777774           


Q ss_pred             cceeE----EEEEccCCCEEEEeC
Q 015363          341 IASIS----DIKFARNGRHILSRD  360 (408)
Q Consensus       341 ~~~i~----~~~~spdg~~l~s~~  360 (408)
                       ..|.    .++|+|++..+++++
T Consensus       332 -~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         332 -DDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             -GGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             -CcccCCccEEEECCCCCEEEEcc
Confidence             3343    467888888776554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=2.7e-25  Score=195.27  Aligned_cols=267  Identities=7%  Similarity=-0.006  Sum_probs=183.3

Q ss_pred             ceeeccceEEEEECCCCCeEEEeecCC--eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           31 EVQEVDIISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      .+.|...|.+++|+|||++|++++.+.  .|++||..+++.                        ..+..|.        
T Consensus        38 ~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~------------------------~~~~~~~--------   85 (360)
T d1k32a3          38 KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA------------------------EKFEENL--------   85 (360)
T ss_dssp             ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE------------------------EECCCCC--------
T ss_pred             EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE------------------------EEeeCCC--------
Confidence            457999999999999999998877554  799999987753                        3566677        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                          ..|.+++|+|+  |++|++++.++.+++|++.+++.......+...        +.       .++|+|+|+.+..
T Consensus        86 ----~~v~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-------~~~~spdg~~la~  144 (360)
T d1k32a3          86 ----GNVFAMGVDRN--GKFAVVANDRFEIMTVDLETGKPTVIERSREAM--------IT-------DFTISDNSRFIAY  144 (360)
T ss_dssp             ----CSEEEEEECTT--SSEEEEEETTSEEEEEETTTCCEEEEEECSSSC--------CC-------CEEECTTSCEEEE
T ss_pred             ----ceEEeeeeccc--ccccceeccccccccccccccceeeeeeccccc--------cc-------chhhccceeeeee
Confidence                77999999654  889999999999999999999887776654322        21       5889999998732


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS  267 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  267 (408)
                      .  .........+..++.+++|+ +...      .. .. ...+...+..++|+|+|+.|+++ .++.+.+||.......
T Consensus       145 ~--~~~~~~~~~~~~~~~~~v~d-~~~~------~~-~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~  213 (360)
T d1k32a3         145 G--FPLKHGETDGYVMQAIHVYD-MEGR------KI-FA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS  213 (360)
T ss_dssp             E--EEECSSTTCSCCEEEEEEEE-TTTT------EE-EE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred             e--ccccccceeeccccceeeec-cccC------ce-ee-ecccccccccccccCCCCEEEEEeCCCceEccccccccee
Confidence            2  11222235677788899999 4321      11 11 24556778889999999999998 8999999987532211


Q ss_pred             ------eeEeecCCC-----------------------------cccCCcCCeEEEEEcCCC----------C--ceEEE
Q 015363          268 ------FNIVDVKPA-----------------------------NMEDLTEVITSAEFHPTH----------C--NMLAY  300 (408)
Q Consensus       268 ------~~~~~~~~~-----------------------------~~~~~~~~v~~~~~~p~~----------~--~~l~s  300 (408)
                            ...+.....                             .+.........+...+++          +  .++++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (360)
T d1k32a3         214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG  293 (360)
T ss_dssp             CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHC
T ss_pred             eccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEe
Confidence                  111110000                             000011122333333322          0  23455


Q ss_pred             EeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeee
Q 015363          301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF  379 (408)
Q Consensus       301 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~  379 (408)
                      ++.++.|++||+.+++.     ..   +            .+.|.+++|||||++|++++ ||.|++||+++ +...+++
T Consensus       294 ~~~~~~i~~~d~~~~~~-----~~---~------------~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~-~~~~~~~  352 (360)
T d1k32a3         294 APEKGVLLKYDVKTRKV-----TE---V------------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK-PEDERTV  352 (360)
T ss_dssp             CCCCEEEEEEETTTCCE-----EE---E------------EEEEEEEEECTTSCEEEEEETTSCEEEEESSC-TTSCEEC
T ss_pred             cCCCCEEEEEECCCCeE-----EE---e------------cCCcCEEEECCCCCEEEEEECCCeEEEEECCC-CCcceEE
Confidence            66788999999987643     11   2            35689999999999999985 79999999997 5666666


Q ss_pred             eec
Q 015363          380 QVH  382 (408)
Q Consensus       380 ~~~  382 (408)
                      ..+
T Consensus       353 ~~d  355 (360)
T d1k32a3         353 ETD  355 (360)
T ss_dssp             CCC
T ss_pred             Eec
Confidence            544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.6e-23  Score=180.71  Aligned_cols=255  Identities=12%  Similarity=0.132  Sum_probs=167.5

Q ss_pred             eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE  113 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  113 (408)
                      +...+....+++++.++++++.|+.|++|++.+................................|.            .
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~  162 (355)
T d1nexb2          95 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM------------A  162 (355)
T ss_dssp             SCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS------------S
T ss_pred             ccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc------------c
Confidence            3444567778899999999999999999998876432100000000000000111112222333333            3


Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      .+.....  +  +.+++++..|+.|++||+.+++...........        +.       .+.+++++..+       
T Consensus       163 ~v~~~~~--~--~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------~~-------~~~~~~~~~~~-------  216 (355)
T d1nexb2         163 SVRTVSG--H--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR--------IY-------STIYDHERKRC-------  216 (355)
T ss_dssp             CEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSC--------EE-------EEEEETTTTEE-------
T ss_pred             ccccccc--c--cceeeeecccceeeeeecccccceeeeeccccc--------cc-------cccccccceee-------
Confidence            3443333  4  669999999999999999998877665544321        22       57889999887       


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                           ++++.|+.|++|+ +..      ..+...+ .+|...|.++++++  ++|+++ .||.|++||+++..+.+    
T Consensus       217 -----~~~~~d~~i~i~d-~~~------~~~~~~~-~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~----  277 (355)
T d1nexb2         217 -----ISASMDTTIRIWD-LEN------GELMYTL-QGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF----  277 (355)
T ss_dssp             -----EEEETTSCEEEEE-TTT------CCEEEEE-CCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE----
T ss_pred             -----ecccccceEEeee-ccc------ccccccc-cccccccccccccc--ceeeeeecccccccccccccceec----
Confidence                 8999999999999 432      2333443 78999999999874  689998 99999999998554433    


Q ss_pred             cCCCcccCCcCCeEEE-EEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          273 VKPANMEDLTEVITSA-EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       273 ~~~~~~~~~~~~v~~~-~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                            ..|...+.++ .+++++ +++++| .|+.|++||+++++.+.   ..+.+|            ...|.+++|+|
T Consensus       278 ------~~~~~~~~~~~~~~~~~-~~l~~g-~d~~i~vwd~~tg~~~~---~~~~~~------------~~~V~~v~~~~  334 (355)
T d1nexb2         278 ------SYHHTNLSAITTFYVSD-NILVSG-SENQFNIYNLRSGKLVH---ANILKD------------ADQIWSVNFKG  334 (355)
T ss_dssp             ------EEECTTCCCCCEEEECS-SEEEEE-ETTEEEEEETTTCCBCC---SCTTTT------------CSEEEEEEEET
T ss_pred             ------ccccCCceEEEEEcCCC-CEEEEE-eCCEEEEEECCCCCEEE---EEecCC------------CCCEEEEEEcC
Confidence                  2344445554 456666 766665 58999999999986541   223344            57899999998


Q ss_pred             CCCEEEEe-CCCeEEEEEC
Q 015363          352 NGRHILSR-DYMTLKLWDI  369 (408)
Q Consensus       352 dg~~l~s~-~d~~v~~wd~  369 (408)
                      + .+|+++ .||+++||.+
T Consensus       335 ~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         335 K-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             T-EEEEEEESSSCEEEEEE
T ss_pred             C-eEEEEEECCCcEEEEEE
Confidence            7 466666 4788777654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.4e-24  Score=182.29  Aligned_cols=238  Identities=10%  Similarity=0.113  Sum_probs=159.8

Q ss_pred             ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEee
Q 015363           91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS  170 (408)
Q Consensus        91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  170 (408)
                      ++++.+++|.            .+|++++|+|      |++|+.||+|++||+.++..     .+        ...|.  
T Consensus         4 ~~i~~l~gH~------------~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~~~-----~h--------~~~V~--   50 (287)
T d1pgua2           4 EVLKTISGHN------------KGITALTVNP------LISGSYDGRIMEWSSSSMHQ-----DH--------SNLIV--   50 (287)
T ss_dssp             EEEEEECCCS------------SCEEEEETTT------TEEEETTSCEEETTTTEEEC-----CC--------CSCEE--
T ss_pred             ceeEEECCCC------------CceEEEEECc------EEEEeCCCeEEEEECCCCCC-----CC--------CCCEE--
Confidence            4677899999            8899999943      89999999999999876431     11        11233  


Q ss_pred             cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccc----------------------------ccc
Q 015363          171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN----------------------------LVA  222 (408)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------------------------~~~  222 (408)
                           ++.+.+++. +            ++++.|+++++|+ +...+..                            ...
T Consensus        51 -----~~~~~~~~~-~------------~s~s~D~~v~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (287)
T d1pgua2          51 -----SLDNSKAQE-Y------------SSISWDDTLKVNG-ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG  111 (287)
T ss_dssp             -----EEECCSTTC-C------------EEEETTTEEEETT-EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTC
T ss_pred             -----EEEecCCCe-E------------EEEeecccccccc-ccccccccceeeeeeccCCceEEEeecccceeeeccce
Confidence                 345554433 2            5666667777776 3221100                            000


Q ss_pred             ccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEE
Q 015363          223 GCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY  300 (408)
Q Consensus       223 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  300 (408)
                      .....+  .+...  ..++++++..++++  +++.+++|++.........       ...|...+++++|+|++ .+|++
T Consensus       112 ~~~~~~--~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~-~~l~~  179 (287)
T d1pgua2         112 DIIKSV--RLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL-------KTPLRAKPSYISISPSE-TYIAA  179 (287)
T ss_dssp             CEEEEE--ECSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC-------SSCCSSCEEEEEECTTS-SEEEE
T ss_pred             eeeeec--cccce--eeeeeccCcceeeeccccceeeeeeccccceeeee-------eeccCCceeEEEeccCc-ccccc
Confidence            111111  11122  34566777777776  4568999998743333321       34577889999999999 99999


Q ss_pred             EeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC----------CCEEEEeC-CCeEEEEEC
Q 015363          301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN----------GRHILSRD-YMTLKLWDI  369 (408)
Q Consensus       301 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd----------g~~l~s~~-d~~v~~wd~  369 (408)
                      |+.||.|++||+.++....   ..+            .+|...|.+++|+|+          +.+|++|+ |++|++||+
T Consensus       180 g~~dg~i~i~d~~~~~~~~---~~~------------~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~  244 (287)
T d1pgua2         180 GDVMGKILLYDLQSREVKT---SRW------------AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV  244 (287)
T ss_dssp             EETTSCEEEEETTTTEEEE---CCS------------CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred             ccccccccceeeccccccc---ccc------------cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEEC
Confidence            9999999999999875431   223            344678999999874          56899985 799999999


Q ss_pred             CCCCCceeeeeecccccceEEecCCCeeeee--eceeeec
Q 015363          370 NMDSGPVATFQVHEHLRPKVMHSSKNYFMGL--DNIHTLY  407 (408)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~  407 (408)
                      ++.++.++.+.+|......+....++.++..  |...++|
T Consensus       245 ~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW  284 (287)
T d1pgua2         245 KRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRW  284 (287)
T ss_dssp             SCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             CCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEE
Confidence            8877888888999988777764445555544  4444444

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.3e-23  Score=178.96  Aligned_cols=277  Identities=13%  Similarity=0.052  Sum_probs=173.7

Q ss_pred             cccceeeecccCcCcccceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363           14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY   92 (408)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   92 (408)
                      -..|++.............+|.++|++++|+|+ +.+|++|+.||.|++|+.......                      
T Consensus        35 v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~----------------------   92 (342)
T d1yfqa_          35 LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF----------------------   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE----------------------
T ss_pred             EEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccc----------------------
Confidence            345776542111111233479999999999986 568999999999999998766531                      


Q ss_pred             eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecC
Q 015363           93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (408)
Q Consensus        93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  172 (408)
                       .....+..           .......+.+.  ...+++++.|+++++||++.................  .       .
T Consensus        93 -~~~~~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~--~-------~  149 (342)
T d1yfqa_          93 -QALTNNEA-----------NLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT--K-------V  149 (342)
T ss_dssp             -EECBSCCC-----------CSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS--S-------S
T ss_pred             -cccccccc-----------ccccccccccc--cccccccccccccceeeccccccceeeecccccccc--c-------c
Confidence             12222221           22333344333  568999999999999998754322221111110000  0       0


Q ss_pred             CceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeC-CCCCEEEEe
Q 015363          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA  251 (408)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~  251 (408)
                      ......+.+.+..+            ++++.++.|++|+ +.........   .. ...+...+.+..+. .++..++++
T Consensus       150 ~~~~~~~~~~~~~~------------~~~~~d~~i~~~~-~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~  212 (342)
T d1yfqa_         150 KNKIFTMDTNSSRL------------IVGMNNSQVQWFR-LPLCEDDNGT---IE-ESGLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             CCCEEEEEECSSEE------------EEEESTTEEEEEE-SSCCTTCCCE---EE-ECSCSSCEEEEEECSGGGCEEEEE
T ss_pred             eeeeeeeeccCCce------------eeecCCCcEEEEe-cccCccccee---ee-ecccccceeeeEeecCCCCEEEee
Confidence            00134556666665            8899999999999 5432221111   11 12333445555554 456788888


Q ss_pred             -cCCeEEEEeCCCCCceeeE-----ee--cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccc
Q 015363          252 -DDLRINLWNLEISNQSFNI-----VD--VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK  323 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~-----~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  323 (408)
                       .||.+.+|+..........     ..  ........|...+++++|+|++ .+||+|+.||.|++||+++++.+    .
T Consensus       213 s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~~~~l----~  287 (342)
T d1yfqa_         213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKI----K  287 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEE----E
T ss_pred             cCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCCCcEE----E
Confidence             8999999998743221110     00  0012235677789999999999 89999999999999999998654    4


Q ss_pred             ccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECC
Q 015363          324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDIN  370 (408)
Q Consensus       324 ~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~  370 (408)
                      .+..+             ..+..++|+|++++|+++ +|+.+++|..-
T Consensus       288 ~~~~~-------------~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         288 NFAKF-------------NEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ECCCC-------------SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             EecCC-------------CCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            44433             234567889999999987 57788888654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=6.3e-23  Score=184.45  Aligned_cols=284  Identities=9%  Similarity=-0.015  Sum_probs=180.2

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .+...+..++|||||++|++++.|++|++||+.+++..                  ....+....+|.            
T Consensus        59 ~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~------------------~~~~i~~~~~~~------------  108 (426)
T d1hzua2          59 DTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT------------------KVAEIKIGIEAR------------  108 (426)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE------------------EEEEEECCSEEE------------
T ss_pred             eCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee------------------EEEEEeCCCCCc------------
Confidence            34457899999999999999999999999999887631                  000011122333            


Q ss_pred             cceeEEEEeecCCCcEEEEE-eCCCeEEEEEcCCCcEEEEeccCCCCc---ccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          113 EKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPE---KAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      ..+.+++|+|  ||++++++ ..++.+++||..+++.......+....   .+.+.+..       ..+..++++..+  
T Consensus       109 ~~~~s~~~sp--DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~s~d~~~~--  177 (426)
T d1hzua2         109 SVESSKFKGY--EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV-------AAIIASHEHPEF--  177 (426)
T ss_dssp             EEEECCSTTC--TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE-------EEEEECSSSSEE--
T ss_pred             ceEEeeeecC--CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCce-------eEEEECCCCCEE--
Confidence            4466777754  48877554 589999999999998887776544321   11112222       245666666654  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCc
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQ  266 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~  266 (408)
                               +++....+.+.+++ .....      ........+...+..++++|++++++++  .+..+.+++..+.. 
T Consensus       178 ---------~~~~~~~~~i~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~-  240 (426)
T d1hzua2         178 ---------IVNVKETGKVLLVN-YKDID------NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR-  240 (426)
T ss_dssp             ---------EEEETTTTEEEEEE-CSSSS------SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE-
T ss_pred             ---------EEecCCCCeEEEEE-ecccc------ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc-
Confidence                     22333344444433 11111      1111123556778899999999988876  67778888876322 


Q ss_pred             eeeEeec------------------------------------CC-----------CcccCCcCCeEEEEEcCCCCceEE
Q 015363          267 SFNIVDV------------------------------------KP-----------ANMEDLTEVITSAEFHPTHCNMLA  299 (408)
Q Consensus       267 ~~~~~~~------------------------------------~~-----------~~~~~~~~~v~~~~~~p~~~~~l~  299 (408)
                      .......                                    ..           ..+.+|...+..++|+|++ ++|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg-~~l~  319 (426)
T d1hzua2         241 LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLY  319 (426)
T ss_dssp             EEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC-SEEE
T ss_pred             EEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCC-ceEE
Confidence            2111100                                    00           1245677888999999999 8887


Q ss_pred             E-------EeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEE-Ee----C-CCeEEE
Q 015363          300 Y-------SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SR----D-YMTLKL  366 (408)
Q Consensus       300 s-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~-s~----~-d~~v~~  366 (408)
                      +       ++.|++|+|||+.+++..    .++..+..   ...+..|...|.+++|||||++|+ ++    + ++.|+|
T Consensus       320 v~~~~~~s~~~~~tv~vwd~~t~~~~----~~~~~~~~---~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v  392 (426)
T d1hzua2         320 VDTTFNPDARISQSVAVFDLKNLDAK----YQVLPIAE---WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV  392 (426)
T ss_dssp             ECCTTCSSHHHHTCEEEEETTCTTSC----CEEECHHH---HHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEE
T ss_pred             EeecCCCCcccCCEEEEEECCCCCcC----eEEeccch---hcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEE
Confidence            4       456789999999988654    22211100   000123346799999999999774 32    2 489999


Q ss_pred             EECCCCCCceeeeeecc
Q 015363          367 WDINMDSGPVATFQVHE  383 (408)
Q Consensus       367 wd~~~~~~~~~~~~~~~  383 (408)
                      ||.++ .+..+.++++.
T Consensus       393 ~D~~T-~k~~~~i~~~~  408 (426)
T d1hzua2         393 VDDKT-LKLKAVVKDPR  408 (426)
T ss_dssp             EETTT-TEEEEEECCTT
T ss_pred             EECCC-CeEEEEECCCC
Confidence            99998 78888887765

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=5.1e-21  Score=171.63  Aligned_cols=288  Identities=10%  Similarity=-0.064  Sum_probs=181.4

Q ss_pred             ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363           35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK  114 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  114 (408)
                      ...+..++|||||++|++++.||.|++||+.+++..                  ....+....+|.            ..
T Consensus        61 g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~------------------~~~~i~~~~~~~------------~~  110 (432)
T d1qksa2          61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT------------------TVAEIKIGSEAR------------SI  110 (432)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC------------------EEEEEECCSEEE------------EE
T ss_pred             CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce------------------EEEEEecCCCCC------------Ce
Confidence            356999999999999999999999999999876531                  000011122233            44


Q ss_pred             eeEEEEeecCCCcEE-EEEeCCCeEEEEEcCCCcEEEEeccCCCCc---ccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          115 INKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPE---KAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       115 v~~v~~~p~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      +.+..|+  +||+++ +++..+++|++||..+++.......+....   ...+.+...       .+.++|+|..+    
T Consensus       111 ~~s~~~S--pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~s~dg~~~----  177 (432)
T d1qksa2         111 ETSKMEG--WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA-------AILASHYRPEF----  177 (432)
T ss_dssp             EECCSTT--CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE-------EEEECSSSSEE----
T ss_pred             EEecccC--CCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCcee-------EEEECCCCCEE----
Confidence            5566664  458876 667889999999999999888776543321   122222332       57788888765    


Q ss_pred             ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCcee
Q 015363          191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSF  268 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~  268 (408)
                             +++...++.|.+|+ ....+.      .+...-.+...+..++|+|+|++++++  .+..+.++|... ....
T Consensus       178 -------~vs~~~~~~i~~~d-~~~~~~------~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~-~~~~  242 (432)
T d1qksa2         178 -------IVNVKETGKILLVD-YTDLNN------LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKLV  242 (432)
T ss_dssp             -------EEEETTTTEEEEEE-TTCSSE------EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEEE
T ss_pred             -------EEEEccCCeEEEEE-ccCCCc------ceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc-ceEE
Confidence                   46667788999888 332211      111112344568899999999988776  688899999873 3222


Q ss_pred             eEeec-------------------------------------CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 015363          269 NIVDV-------------------------------------KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  311 (408)
Q Consensus       269 ~~~~~-------------------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  311 (408)
                      ..+..                                     .+.....|...+....++|++ ..+++++.+...++|+
T Consensus       243 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~s~p~~~~lw~  321 (432)
T d1qksa2         243 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYV  321 (432)
T ss_dssp             EEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEE
T ss_pred             EEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCC-CeEEEEecCCccceee
Confidence            22111                                     001122344456777788887 7778888888888887


Q ss_pred             cCCCceec---ccccccccccC-----CCCc--------cccccccceeEEEEEccCCCEEEEe-----C-CCeEEEEEC
Q 015363          312 MRQSALCD---THSKLFEEQEA-----PGTR--------SFFTEIIASISDIKFARNGRHILSR-----D-YMTLKLWDI  369 (408)
Q Consensus       312 ~~~~~~~~---~~~~~~~~~~~-----~~~~--------~~~~~h~~~i~~~~~spdg~~l~s~-----~-d~~v~~wd~  369 (408)
                      ..+.....   ..+....+...     ....        ..+.+|...|.+++|||||++|+.+     . ++.|+|||.
T Consensus       322 ~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         322 DATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             ECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             cccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence            55432100   00010111100     0000        1123556789999999999988543     2 489999999


Q ss_pred             CCCCCceeeeeec
Q 015363          370 NMDSGPVATFQVH  382 (408)
Q Consensus       370 ~~~~~~~~~~~~~  382 (408)
                      ++ .++.+.+++.
T Consensus       402 ~T-~k~~~~i~~~  413 (432)
T d1qksa2         402 KT-LELKHVIKDE  413 (432)
T ss_dssp             TT-TEEEEEECCT
T ss_pred             CC-ceEEeEecCC
Confidence            98 6777777664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=7.4e-20  Score=155.92  Aligned_cols=248  Identities=10%  Similarity=0.125  Sum_probs=174.9

Q ss_pred             eeeccceEEEEECCCCCeE-EEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l-~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      +...+.+..++|+|||++| ++++.++.|++||+.+++.                       +..+..+.          
T Consensus        28 i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-----------------------~~~~~~~~----------   74 (301)
T d1l0qa2          28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----------------------IATVPAGS----------   74 (301)
T ss_dssp             EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----------------------EEEEECSS----------
T ss_pred             EECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-----------------------eeeeeccc----------
Confidence            3444667899999999977 5667889999999987653                       34444443          


Q ss_pred             cccceeEEEEeecCCCcEE-EEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          111 IEEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                         .+..+.|+++  +..+ +++..++.+.+|+..+++..........+                ..+.++|++..+   
T Consensus        75 ---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~dg~~~---  130 (301)
T d1l0qa2          75 ---SPQGVAVSPD--GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP----------------LGLALSPDGKKL---  130 (301)
T ss_dssp             ---SEEEEEECTT--SSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE----------------EEEEECTTSSEE---
T ss_pred             ---cccccccccc--cccccccccccceeeecccccceeeeeccccccc----------------eEEEeecCCCee---
Confidence               3678899654  6555 45567889999999999877766554321                167899999876   


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCce
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS  267 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~  267 (408)
                              ++++..+..+.+|+ ...      ......  ..+...+..++++|++..++++  .++.+.+|+.. ....
T Consensus       131 --------~~~~~~~~~~~~~~-~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  192 (301)
T d1l0qa2         131 --------YVTNNGDKTVSVIN-TVT------KAVINT--VSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV-TNSV  192 (301)
T ss_dssp             --------EEEETTTTEEEEEE-TTT------TEEEEE--EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEE
T ss_pred             --------eeeeccccceeeee-ccc------cceeee--cccCCCceEEEeeccccceeeeccccccccccccc-ceee
Confidence                    35666778888888 322      112222  2233557889999999988876  56778888877 4444


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe---CCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      ....       . ....+..++|++++ ..++.+.   .++.|++||+.+++..    ..+..+             ..+
T Consensus       193 ~~~~-------~-~~~~~~~~~~~~~g-~~~~v~~~~~~~~~v~v~D~~t~~~~----~~~~~~-------------~~~  246 (301)
T d1l0qa2         193 IDTV-------K-VEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKIT----ARIPVG-------------PDP  246 (301)
T ss_dssp             EEEE-------E-CSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEE----EEEECC-------------SSE
T ss_pred             eecc-------c-ccCCcceeeccccc-cccccccccceeeeeeeeecCCCeEE----EEEcCC-------------CCE
Confidence            4332       1 23456789999999 5554443   3478999999998654    344333             357


Q ss_pred             EEEEEccCCCEE-EEeC-CCeEEEEECCCCCCceeeeee
Q 015363          345 SDIKFARNGRHI-LSRD-YMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       345 ~~~~~spdg~~l-~s~~-d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      .+++|+|||++| ++++ ++.|++||+++ ++.++++..
T Consensus       247 ~~va~spdg~~l~va~~~~~~i~v~D~~t-~~~~~~~~v  284 (301)
T d1l0qa2         247 AGIAVTPDGKKVYVALSFCNTVSVIDTAT-NTITATMAV  284 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEECCC-CeEEEEEeC
Confidence            899999999987 4665 69999999998 788888764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=1.1e-20  Score=165.41  Aligned_cols=191  Identities=14%  Similarity=0.129  Sum_probs=145.5

Q ss_pred             EEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeE
Q 015363           39 SAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK  117 (408)
Q Consensus        39 ~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  117 (408)
                      .+-.||| ||+++|+++. |.|.+|+..++..                        ..+ +|.            ..|.+
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~------------------------~~~-~~~------------~~v~~   47 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYV------------------------LKV-PEP------------LRIRY   47 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSBE------------------------EEC-SCC------------SCEEE
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCcE------------------------EEc-cCC------------CCEEE
Confidence            3567999 9999999874 6999999877653                        122 466            67999


Q ss_pred             EEEeecCCCcEEEEEeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363          118 IRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN  195 (408)
Q Consensus       118 v~~~p~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (408)
                      ++|+|+  |++|++++.+.  .|++||+.+++.......         .+.+.       .++|+|+|+.+         
T Consensus        48 ~~~spD--g~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~---------~~~v~-------~~~~spdg~~l---------  100 (360)
T d1k32a3          48 VRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEEN---------LGNVF-------AMGVDRNGKFA---------  100 (360)
T ss_dssp             EEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCC---------CCSEE-------EEEECTTSSEE---------
T ss_pred             EEECCC--CCEEEEEEcCCCCEEEEEECCCCcEEEeeCC---------CceEE-------eeeeccccccc---------
Confidence            999765  88888776543  799999999886654332         22344       78999999998         


Q ss_pred             ccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-----------cCCeEEEEeCCCC
Q 015363          196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-----------DDLRINLWNLEIS  264 (408)
Q Consensus       196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-----------~d~~i~iwd~~~~  264 (408)
                         ++++.++.+++|+ +..      ..+... ...|...+.+++|+|+|++|+.+           .++.+++||... 
T Consensus       101 ---~~~~~~~~~~~~~-~~~------~~~~~~-~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~-  168 (360)
T d1k32a3         101 ---VVANDRFEIMTVD-LET------GKPTVI-ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-  168 (360)
T ss_dssp             ---EEEETTSEEEEEE-TTT------CCEEEE-EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-
T ss_pred             ---ceecccccccccc-ccc------cceeee-eecccccccchhhccceeeeeeeccccccceeeccccceeeecccc-
Confidence               9999999999999 432      222233 36777888999999999999853           245689999984 


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                      ++...        +..+...+..+.|+|+| +.|++++.++.+.+||....
T Consensus       169 ~~~~~--------~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         169 RKIFA--------ATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             TEEEE--------CSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSS
T ss_pred             Cceee--------ecccccccccccccCCC-CEEEEEeCCCceEccccccc
Confidence            43333        34567778899999999 99999999999999997654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.7e-19  Score=156.06  Aligned_cols=259  Identities=8%  Similarity=0.043  Sum_probs=165.5

Q ss_pred             CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCc
Q 015363           48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA  127 (408)
Q Consensus        48 ~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~  127 (408)
                      ++|++++.|++|.|||+.+.+.                       +..+..+...          ..+.+++|+|  ||+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~-----------------------~~~i~~~~~~----------~~~~~i~~sp--Dg~   46 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAV-----------------------DKVITIADAG----------PTPMVPMVAP--GGR   46 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-----------------------EEEEECTTCT----------TCCCCEEECT--TSS
T ss_pred             eEEEEEcCCCEEEEEECCCCeE-----------------------EEEEECCCCC----------CCccEEEECC--CCC
Confidence            5899999999999999987753                       3344332211          4478999965  487


Q ss_pred             EE-EEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCce
Q 015363          128 LY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS  206 (408)
Q Consensus       128 ~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  206 (408)
                      ++ ++++.++.|.+||+.+++............          .......++++|+++.+.................+..
T Consensus        47 ~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~----------~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~  116 (337)
T d1pbyb_          47 IAYATVNKSESLVKIDLVTGETLGRIDLSTPEE----------RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR  116 (337)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECCBTTE----------EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             EEEEEECCCCeEEEEECCCCcEEEEEecCCCcc----------cccceeeEEEcCCCcEEEEeecCCcceeeeccccccc
Confidence            77 456789999999999998877665543211          0011225789999998733322222222223334556


Q ss_pred             eeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCC-----------
Q 015363          207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP-----------  275 (408)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------  275 (408)
                      +.+|| ...      ......+  .+...+..++|+|++++++++. +.+.+||..+.. ....+....           
T Consensus       117 ~~~~d-~~~------~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~-~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~  185 (337)
T d1pbyb_         117 VALYD-AET------LSRRKAF--EAPRQITMLAWARDGSKLYGLG-RDLHVMDPEAGT-LVEDKPIQSWEAETYAQPDV  185 (337)
T ss_dssp             EEEEE-TTT------TEEEEEE--ECCSSCCCEEECTTSSCEEEES-SSEEEEETTTTE-EEEEECSTTTTTTTBCCCBC
T ss_pred             eeecc-ccC------CeEEEec--cccCCceEEEEcCCCCEEEEEc-CCcceeeeecCc-EEEEeecCCccccceecCCc
Confidence            66666 221      2222222  2335577899999999998872 235678876322 221111100           


Q ss_pred             ------------------------------------------------CcccCCcCCeEEEEEcCCCCceEEEEeCCCeE
Q 015363          276 ------------------------------------------------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  307 (408)
Q Consensus       276 ------------------------------------------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  307 (408)
                                                                      ..+..+...+..+.++|++ .+++.+  ++.|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i  262 (337)
T d1pbyb_         186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVL  262 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEE
T ss_pred             ceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccE
Confidence                                                            0011233445667778887 666554  5899


Q ss_pred             EEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecc
Q 015363          308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                      ++||+.+++.+    ..+...             ..+.+++|+|||++|++++ ++.|++||+.+ ++.+.+++...
T Consensus       263 ~v~d~~~~~~~----~~~~~~-------------~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t-~~~v~~i~~~g  321 (337)
T d1pbyb_         263 ESFDLEKNASI----KRVPLP-------------HSYYSVNVSTDGSTVWLGGALGDLAAYDAET-LEKKGQVDLPG  321 (337)
T ss_dssp             EEEETTTTEEE----EEEECS-------------SCCCEEEECTTSCEEEEESBSSEEEEEETTT-CCEEEEEECGG
T ss_pred             EEEECCCCcEE----EEEcCC-------------CCEEEEEECCCCCEEEEEeCCCcEEEEECCC-CcEEEEEECCC
Confidence            99999998765    333222             4578999999999999885 79999999998 78888886543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=1.2e-19  Score=157.68  Aligned_cols=269  Identities=9%  Similarity=-0.011  Sum_probs=159.0

Q ss_pred             EEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec-cCCcccccccccccccceeEEE
Q 015363           41 IEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEEKINKIR  119 (408)
Q Consensus        41 ~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~~~~~~~~v~~v~  119 (408)
                      ++|++++++|++++.+++|.+||+.+++.                       +..++ .|.            ..+.+++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~-----------------------~~t~~~~~~------------~~p~~l~   46 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTV-----------------------YKSCVMPDK------------FGPGTAM   46 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSSC------------CSSCEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCE-----------------------EEEEEcCCC------------CCcceEE
Confidence            46899999999999999999999987753                       34443 233            4478999


Q ss_pred             EeecCCCcEEE-EEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363          120 WCQSANSALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (408)
Q Consensus       120 ~~p~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (408)
                      |+|  ||++++ ++..++.|.+||+.+++............         .....+..++++|||+.+............
T Consensus        47 ~sp--DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~---------~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~  115 (346)
T d1jmxb_          47 MAP--DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG---------EVGRSMYSFAISPDGKEVYATVNPTQRLND  115 (346)
T ss_dssp             ECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT---------EEEECSSCEEECTTSSEEEEEEEEEEECSS
T ss_pred             ECC--CCCEEEEEECCCCcEEEEeCccCeeeeeeccccccc---------ccCCceEEEEEecCCCEEEEEecCCcceee
Confidence            965  587764 45688999999999998877665433221         001122257788888776433221111111


Q ss_pred             cCCCCCceeeeceeeeccccc-----------------------------------cccccceeeccccccceEEEEeCC
Q 015363          199 FPPGGVSSLRLPVVVTSQETN-----------------------------------LVAGCRRIYAHAHDYHINSISNNS  243 (408)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~v~~i~~~~  243 (408)
                      .....+..+.+|+ .......                                   ........+ .. ......+.++|
T Consensus       116 ~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~  192 (346)
T d1jmxb_         116 HYVVKPPRLEVFS-TADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVAL-PL-RNWNRKGYSAP  192 (346)
T ss_dssp             CEEECCCEEEEEE-GGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEE-CS-TTCCCTTBCCC
T ss_pred             eeccCcceEEEEe-cccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEE-ec-CCCccceEEec
Confidence            2222334444443 1110000                                   000000000 00 01111222333


Q ss_pred             CCCEEE--------------------------Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCc
Q 015363          244 DGETFI--------------------------SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN  296 (408)
Q Consensus       244 ~~~~l~--------------------------~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  296 (408)
                      ++..+.                          ++ .+..+.+||..+.......       ...+...+..+.+++++ .
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~  264 (346)
T d1jmxb_         193 DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE-------FADLTELYFTGLRSPKD-P  264 (346)
T ss_dssp             BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE-------EEECSSCEEEEEECSSC-T
T ss_pred             cccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEE-------eecccceeEEEEEeCCC-C
Confidence            332221                          11 2233445555432222211       34466678888999998 6


Q ss_pred             eEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCc
Q 015363          297 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP  375 (408)
Q Consensus       297 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~  375 (408)
                      .+++.. ++.|.+||..+++.+    ..+...             ..+.+++|+|||++|++++ |+.|++||+++ ++.
T Consensus       265 ~~~~~~-~~~v~v~d~~~~~~~----~~~~~~-------------~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t-~~~  325 (346)
T d1jmxb_         265 NQIYGV-LNRLAKYDLKQRKLI----KAANLD-------------HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT-LEK  325 (346)
T ss_dssp             TEEEEE-ESEEEEEETTTTEEE----EEEECS-------------SCCCEEEECSSSSCEEEESBSSEEEEEETTT-TEE
T ss_pred             EEEEec-CCeEEEEECCCCcEE----EEEcCC-------------CCEEEEEEcCCCCEEEEEeCCCcEEEEECcc-CCE
Confidence            666654 468999999998654    333222             3588999999999999985 79999999998 799


Q ss_pred             eeeeeecccc
Q 015363          376 VATFQVHEHL  385 (408)
Q Consensus       376 ~~~~~~~~~~  385 (408)
                      +.+++.+.+.
T Consensus       326 i~~i~~p~g~  335 (346)
T d1jmxb_         326 VKNIKLPGGD  335 (346)
T ss_dssp             EEEEECSSSC
T ss_pred             EEEEECCCCC
Confidence            9998866554

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-18  Score=147.51  Aligned_cols=206  Identities=14%  Similarity=0.232  Sum_probs=147.5

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ..|+|+.|  +  |++||+|+.||+|++||+.++++...+..+..        .|.       ++  .++++.+      
T Consensus        16 ~~V~c~~~--d--~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~--------~V~-------~v--~~~~~~l------   68 (293)
T d1p22a2          16 KGVYCLQY--D--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTG--------SVL-------CL--QYDERVI------   68 (293)
T ss_dssp             CCEEEEEC--C--SSEEEEEESSSCEEEEESSSCCEEEEECCCSS--------CEE-------EE--ECCSSEE------
T ss_pred             CCEEEEEE--c--CCEEEEEeCCCeEEEEECCCCcEEEEEecCCC--------CEe-------ee--eccccee------
Confidence            67998776  4  77999999999999999999999888876643        233       34  4467776      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                            ++++.|+.|++|+ +......      ... ..+..  ....+.+....++++ .++.+.+||...........
T Consensus        69 ------~s~s~D~~i~~~~-~~~~~~~------~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (293)
T d1p22a2          69 ------ITGSSDSTVRVWD-VNTGEML------NTL-IHHCE--AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR  132 (293)
T ss_dssp             ------EEEETTSCEEEEE-SSSCCEE------EEE-CCCCS--CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred             ------ecccccccccccc-ccccccc------ccc-ccccc--ccccccccccceeecccccceeEeeccccccccccc
Confidence                  9999999999999 4332211      111 11112  223344556677777 99999999998554433322


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                           .+..|...+..+.+.+.   .+++++.|+.|++||+++++..    ..+.++            ...|..+.++ 
T Consensus       133 -----~~~~~~~~v~~~~~~~~---~~~~~s~d~~i~~~d~~~~~~~----~~~~~~------------~~~v~~~~~~-  187 (293)
T d1p22a2         133 -----VLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEFV----RTLNGH------------KRGIACLQYR-  187 (293)
T ss_dssp             -----EECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTTCCEE----EEEECC------------SSCEEEEEEE-
T ss_pred             -----cccccccccccceeccc---ccccccCCCceeeecCCCCcEE----EEEccc------------ccccccccCC-
Confidence                 24667888888777654   5788889999999999988654    555555            3567776665 


Q ss_pred             CCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccce
Q 015363          352 NGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPK  388 (408)
Q Consensus       352 dg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~  388 (408)
                       +.+|+++ .|+.|++||+++ ...+..+.+|......
T Consensus       188 -~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~  223 (293)
T d1p22a2         188 -DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRC  223 (293)
T ss_dssp             -TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEE
T ss_pred             -CCeEEEecCCCEEEEEeccc-ceeeeeecccceeeee
Confidence             5678887 589999999998 6888888887765443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=2.4e-19  Score=160.84  Aligned_cols=270  Identities=10%  Similarity=0.052  Sum_probs=170.5

Q ss_pred             ECCC--CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEE
Q 015363           43 FDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW  120 (408)
Q Consensus        43 ~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~  120 (408)
                      ++.|  +.++++++.||+|+|||..+++                       .+..+..|.             .+..++|
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~-----------------------~~~~l~~g~-------------~~~~vaf   69 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKK-----------------------IVKVIDTGY-------------AVHISRM   69 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCS-----------------------EEEEEECCS-------------SEEEEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCc-----------------------EEEEEeCCC-------------CeeEEEE
Confidence            4454  3356788899999999998876                       345666653             3889999


Q ss_pred             eecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccC
Q 015363          121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFP  200 (408)
Q Consensus       121 ~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  200 (408)
                      +|  ||+++++++.|++|++||+.+++............   +.+.+.       ++.|+|||+.+           +++
T Consensus        70 SP--DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~---~~~~~~-------s~~~spDG~~l-----------~v~  126 (426)
T d1hzua2          70 SA--SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE---ARSVES-------SKFKGYEDRYT-----------IAG  126 (426)
T ss_dssp             CT--TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE---EEEEEE-------CCSTTCTTTEE-----------EEE
T ss_pred             CC--CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCC---CcceEE-------eeeecCCCCEE-----------EEe
Confidence            65  59999999999999999999887655443221110   011112       56788999986           355


Q ss_pred             CCCCceeeeceeeeccccccccc----cceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecC
Q 015363          201 PGGVSSLRLPVVVTSQETNLVAG----CRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVK  274 (408)
Q Consensus       201 ~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~  274 (408)
                      +..++.+.+|| ...........    ........+......+.+++++..++..  ..+.+.+++..........    
T Consensus       127 ~~~~~~v~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~----  201 (426)
T d1hzua2         127 AYWPPQFAIMD-GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT----  201 (426)
T ss_dssp             EEESSEEEEEE-TTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEE----
T ss_pred             ecCCCeEEEEc-CCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeE----
Confidence            56789999998 43322111100    0000012233455667788888777765  5677777777643322211    


Q ss_pred             CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccc-----------ccc-----------------
Q 015363          275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK-----------LFE-----------------  326 (408)
Q Consensus       275 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------~~~-----------------  326 (408)
                         ...+...+..+.|+|++..++++...+..+.+++..+++.......           ...                 
T Consensus       202 ---~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  278 (426)
T d1hzua2         202 ---SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI  278 (426)
T ss_dssp             ---EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEE
T ss_pred             ---EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceE
Confidence               2345677899999999944444445677899999887754310000           000                 


Q ss_pred             ---ccc-------CCCCccccccccceeEEEEEccCCCEEEE-------eC-CCeEEEEECCCCCCceeeee
Q 015363          327 ---EQE-------APGTRSFFTEIIASISDIKFARNGRHILS-------RD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       327 ---~~~-------~~~~~~~~~~h~~~i~~~~~spdg~~l~s-------~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                         +..       .......+.+|...+..++|+||+++|++       ++ +++|++||+++ ++..+++.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t-~~~~~~~~  349 (426)
T d1hzua2         279 SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVL  349 (426)
T ss_dssp             EEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEE
T ss_pred             EEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCC-CCcCeEEe
Confidence               000       00112235678888999999999999995       33 48999999997 56665553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=5e-17  Score=140.27  Aligned_cols=282  Identities=10%  Similarity=0.121  Sum_probs=171.9

Q ss_pred             ccceeeecccCcCcccceeeccceEEEEECCCCCeEEEee-cCCeEEEEEeCCCCCCCCcccccccccccccCCCcccee
Q 015363           15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK   93 (408)
Q Consensus        15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~   93 (408)
                      ..|++... +.........|.+.|..|+|+|||++|++++ .|+.|++|++......                   .+..
T Consensus        17 ~v~~~~~~-~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~-------------------~~~~   76 (333)
T d1ri6a_          17 HVWNLNHE-GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-------------------LTFA   76 (333)
T ss_dssp             EEEEECTT-SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-------------------EEEE
T ss_pred             EEEEEcCC-CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc-------------------EEEe
Confidence            45776541 2222234467889999999999999885554 5899999999765421                   0011


Q ss_pred             eeeccCCcccccccccccccceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecC
Q 015363           94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV  172 (408)
Q Consensus        94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  172 (408)
                      .. ..+.            ..+..++|+|  +|+++++++ .++.+.+|+................             .
T Consensus        77 ~~-~~~~------------~~p~~l~~sp--Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------------~  128 (333)
T d1ri6a_          77 AE-SALP------------GSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-------------D  128 (333)
T ss_dssp             EE-EECS------------SCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-------------T
T ss_pred             ee-cccC------------CCceEEEEcC--CCCEEeecccCCCceeeeccccccceecccccCCC-------------c
Confidence            11 1111            3477899964  488888887 5779999998876654443322111             0


Q ss_pred             CceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-
Q 015363          173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-  251 (408)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-  251 (408)
                      .+..+.++|+++.+           +.....+..+.+|+ ............... ..........++|++++..++.. 
T Consensus       129 ~~~~v~~s~d~~~~-----------~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~-~~~~g~~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         129 GCHSANISPDNRTL-----------WVPALKQDRICLFT-VSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             TBCCCEECTTSSEE-----------EEEEGGGTEEEEEE-ECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             cceEEEeeecceee-----------eccccccceeeEEE-eccCCcceeeeceee-eeecCCCccEEEEeccceeEEeec
Confidence            11157889999876           23333455677777 433222111111111 12334557889999999888765 


Q ss_pred             -cCCeEEEEeCCCCCceeeE---eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccc
Q 015363          252 -DDLRINLWNLEISNQSFNI---VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE  327 (408)
Q Consensus       252 -~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  327 (408)
                       ..+...+|+..........   +...+.. .........+++++++..+++++..++.+.+|++......    .....
T Consensus       196 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  270 (333)
T d1ri6a_         196 ELNSSVDVWELKDPHGNIECVQTLDMMPEN-FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV----LSKEG  270 (333)
T ss_dssp             TTTTEEEEEESSCTTSCCEEEEEEECSCTT-CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC----EEEEE
T ss_pred             cccCceEEEeecccccceeeeeeeeeeecC-CCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCE----EEEEE
Confidence             6778888887643332211   1111111 1234456788999999555666667889999998765432    11111


Q ss_pred             ccCCCCccccccccceeEEEEEccCCCEEEEe-CC-CeEEEEECCC
Q 015363          328 QEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY-MTLKLWDINM  371 (408)
Q Consensus       328 ~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d-~~v~~wd~~~  371 (408)
                      +.         .+...+.+++|+|||++|+++ .+ +.|++|+++.
T Consensus       271 ~~---------~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         271 FQ---------PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EE---------ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             Ee---------CCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            10         112456789999999998776 44 8999997654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.79  E-value=1.3e-16  Score=140.17  Aligned_cols=291  Identities=6%  Similarity=-0.069  Sum_probs=170.1

Q ss_pred             eeeccceEEEEECCCCCeEEEe-----ecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATG-----DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL  106 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  106 (408)
                      -.+..++.+++++|||+.++..     +..+.|.+||..+++.                       +..+..+.      
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~-----------------------~~~~~~~~------   67 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-----------------------LGHVNGGF------   67 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCE-----------------------EEEEeCCC------
Confidence            3577889999999999988764     2345788999877653                       34455544      


Q ss_pred             cccccccceeEEEEeecCCCcEEEEEe----------CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCcee
Q 015363          107 KSLEIEEKINKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP  176 (408)
Q Consensus       107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (408)
                              ...++|+|+  |++|+++.          .++.|.+||+.+++.......+....        ......+..
T Consensus        68 --------~~~~a~SpD--G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~--------~~~~~~~~~  129 (373)
T d2madh_          68 --------LPNPVAAHS--GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR--------FDVGPYSWM  129 (373)
T ss_pred             --------CccEEEcCC--CCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcce--------eEeccCCCc
Confidence                    346899755  88988874          46789999999998876665443321        000011111


Q ss_pred             eEEccCCCeeecccc----------------------------cc-cCccccCCCCCceeeeceeeecccccccccccee
Q 015363          177 KSYMANGGCGERNFG----------------------------CA-SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI  227 (408)
Q Consensus       177 ~~~~~~~~~l~~~~~----------------------------~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  227 (408)
                      +.++++++.+.....                            .. ....+++...++.+.+|+ ............. .
T Consensus       130 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~-~~~~~~~~~~~~~-~  207 (373)
T d2madh_         130 NANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTD-HAGGAAGAGLVGA-M  207 (373)
T ss_pred             EEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEE-cCCceeeEEEeee-c
Confidence            222333222111000                            00 011245677888999888 4332221111100 0


Q ss_pred             eccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCC--c---ccCCcCCeEEEEEcCCCC-------
Q 015363          228 YAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA--N---MEDLTEVITSAEFHPTHC-------  295 (408)
Q Consensus       228 ~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~---~~~~~~~v~~~~~~p~~~-------  295 (408)
                      ...........+.+++++..++.+.++.+.+|+..... ..........  .   ..........++++|++.       
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  286 (373)
T d2madh_         208 LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG-ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS  286 (373)
T ss_pred             cccCccceeeeEEECCCceEEEecCCceEEEEEcCCCe-EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecC
Confidence            00122233455667777766666688999999988433 2221111000  0   000112233456666652       


Q ss_pred             --ceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCE--EEEeC-CCeEEEEECC
Q 015363          296 --NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH--ILSRD-YMTLKLWDIN  370 (408)
Q Consensus       296 --~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~--l~s~~-d~~v~~wd~~  370 (408)
                        ..+++...++.+.+||..+++..    ..+...             ..+..++|+|||+.  +++++ |+.|++||+.
T Consensus       287 ~~~~~~~~~~~~~v~~~d~~t~~~~----~~~~~~-------------~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         287 EQSAWKLHAAAKEVTSVTGLVGQTS----SQISLG-------------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CCceEEeecCCCeEEEEECCCCcEE----EEecCC-------------CCeeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence              23344556778999999998654    333322             46889999999984  34554 6999999999


Q ss_pred             CCCCceeeeeecccccceEE
Q 015363          371 MDSGPVATFQVHEHLRPKVM  390 (408)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~  390 (408)
                      + ++.++++..+......+.
T Consensus       350 t-g~~~~~~~~~g~~P~~l~  368 (373)
T d2madh_         350 A-GDQDQSTVELGSGPQVLS  368 (373)
T ss_pred             C-CCEEEEECCCCCCCcEEE
Confidence            8 899999987765554443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.79  E-value=2.1e-16  Score=134.17  Aligned_cols=234  Identities=12%  Similarity=0.093  Sum_probs=161.8

Q ss_pred             EEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEE
Q 015363           50 LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALY  129 (408)
Q Consensus        50 l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l  129 (408)
                      .++++.|++|.+||+++++.                       +..+...             ..+..++|+|  +|+++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~-----------------------~~~i~~g-------------~~p~~va~sp--dG~~l   46 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKV-----------------------TATIPVG-------------SNPMGAVISP--DGTKV   46 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEE-----------------------EEEEECS-------------SSEEEEEECT--TSSEE
T ss_pred             EEEECCCCEEEEEECCCCeE-----------------------EEEEECC-------------CCceEEEEeC--CCCEE
Confidence            35677899999999987753                       2333322             3378899965  48877


Q ss_pred             E-EEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceee
Q 015363          130 L-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR  208 (408)
Q Consensus       130 ~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  208 (408)
                      + +++.++.|++||+.+++....+.....+                ..+.+++++..+           ++++..++.+.
T Consensus        47 ~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~~~   99 (301)
T d1l0qa2          47 YVANAHSNDVSIIDTATNNVIATVPAGSSP----------------QGVAVSPDGKQV-----------YVTNMASSTLS   99 (301)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECSSSE----------------EEEEECTTSSEE-----------EEEETTTTEEE
T ss_pred             EEEECCCCEEEEEECCCCceeeeeeccccc----------------cccccccccccc-----------cccccccceee
Confidence            4 5668999999999999887766554322                167889998876           35667778888


Q ss_pred             eceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE
Q 015363          209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT  286 (408)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  286 (408)
                      +|+ ...      ......+  .+.....+++++|++..++.+  .++.+.+|+..+. .....+       . +...+.
T Consensus       100 ~~~-~~~------~~~~~~~--~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~-~~~~~~  161 (301)
T d1l0qa2         100 VID-TTS------NTVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTV-------S-VGRSPK  161 (301)
T ss_dssp             EEE-TTT------TEEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE-------E-CCSSEE
T ss_pred             ecc-ccc------ceeeeec--cccccceEEEeecCCCeeeeeeccccceeeeecccc-ceeeec-------c-cCCCce
Confidence            888 322      1222222  333567889999999987665  6899999999844 333321       2 234578


Q ss_pred             EEEEcCCCCceEEEEeC-CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe---C-C
Q 015363          287 SAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---D-Y  361 (408)
Q Consensus       287 ~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~---~-d  361 (408)
                      .+.++|++ ..+++++. ++.+.+|+.......    .....+             ..+..++|++++..++.+   . +
T Consensus       162 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------~~~~~~~~~~~g~~~~v~~~~~~~  223 (301)
T d1l0qa2         162 GIAVTPDG-TKVYVANFDSMSISVIDTVTNSVI----DTVKVE-------------AAPSGIAVNPEGTKAYVTNVDKYF  223 (301)
T ss_dssp             EEEECTTS-SEEEEEETTTTEEEEEETTTTEEE----EEEECS-------------SEEEEEEECTTSSEEEEEEECSSC
T ss_pred             EEEeeccc-cceeeecccccccccccccceeee----eccccc-------------CCcceeecccccccccccccccee
Confidence            89999999 55555554 577888887766443    233222             457789999999987654   2 3


Q ss_pred             CeEEEEECCCCCCceeeeeecccc
Q 015363          362 MTLKLWDINMDSGPVATFQVHEHL  385 (408)
Q Consensus       362 ~~v~~wd~~~~~~~~~~~~~~~~~  385 (408)
                      +.|++||+.+ ++.+..+..+...
T Consensus       224 ~~v~v~D~~t-~~~~~~~~~~~~~  246 (301)
T d1l0qa2         224 NTVSMIDTGT-NKITARIPVGPDP  246 (301)
T ss_dssp             CEEEEEETTT-TEEEEEEECCSSE
T ss_pred             eeeeeeecCC-CeEEEEEcCCCCE
Confidence            7899999998 6888877765543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=1.3e-16  Score=142.57  Aligned_cols=205  Identities=11%  Similarity=0.087  Sum_probs=135.7

Q ss_pred             CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCC
Q 015363           46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN  125 (408)
Q Consensus        46 ~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~  125 (408)
                      +.-++++.+.+|+|.|||..+++.                       +..+..+.             .+..++|+|+  
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v-----------------------~~~~~~g~-------------~~~~v~fSpD--   72 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEI-----------------------KTVLDTGY-------------AVHISRLSAS--   72 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCE-----------------------EEEEECSS-------------CEEEEEECTT--
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcE-----------------------EEEEeCCC-------------CeeEEEECCC--
Confidence            344568999999999999988763                       45565553             3899999754  


Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (408)
                      |+++++++.|++|++||+.+++............   +.+.+.       ...|+|||+.+           ++++..++
T Consensus        73 G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~---~~~~~~-------s~~~SpDG~~l-----------~vs~~~~~  131 (432)
T d1qksa2          73 GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---ARSIET-------SKMEGWEDKYA-----------IAGAYWPP  131 (432)
T ss_dssp             SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---EEEEEE-------CCSTTCTTTEE-----------EEEEEETT
T ss_pred             CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC---CCCeEE-------ecccCCCCCEE-----------EEEcCCCC
Confidence            9999999999999999998876433332211100   011122       45678899976           36778899


Q ss_pred             eeeeceeeecccccccccc----ceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCccc
Q 015363          206 SLRLPVVVTSQETNLVAGC----RRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANME  279 (408)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~  279 (408)
                      .|++|| ....+.......    .......+......+.++|++..++.+  .++.|.+||...... ..+..     + 
T Consensus       132 ~v~i~d-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~-~~~~~-----i-  203 (432)
T d1qksa2         132 QYVIMD-GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-LKTTE-----I-  203 (432)
T ss_dssp             EEEEEE-TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-EEEEE-----E-
T ss_pred             eEEEEe-CccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc-ceEEE-----E-
Confidence            999999 443222111000    000012344567788999999887665  789999999984432 22211     1 


Q ss_pred             CCcCCeEEEEEcCCCCceEEEEe-CCCeEEEEEcCCCcee
Q 015363          280 DLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALC  318 (408)
Q Consensus       280 ~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~  318 (408)
                      .+...+..++|+|+| +++++++ .+..+.++|..+++..
T Consensus       204 ~~g~~~~~~~~spdg-~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         204 SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             cccCccccceECCCC-CEEEEeccccceEEEeecccceEE
Confidence            234567899999999 6555554 5678999999877543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=2.6e-16  Score=137.10  Aligned_cols=284  Identities=9%  Similarity=0.017  Sum_probs=159.2

Q ss_pred             eEEEEECCCCCeEEEee-----cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           38 ISAIEFDKSGDHLATGD-----RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      +...+.+|||+.+++..     .++.|.+||..+++.                       +..+..+.            
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~-----------------------~~~~~~g~------------   48 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-----------------------IGMIDGGF------------   48 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-----------------------EEEEEECS------------
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcE-----------------------EEEEECCC------------
Confidence            33446689999887653     456799999887753                       33444443            


Q ss_pred             cceeEEEEeecCCCcEEEEE----------eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccC
Q 015363          113 EKINKIRWCQSANSALYLLS----------TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN  182 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~----------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  182 (408)
                        +..++|+|+  |++|+++          ..|+.|++||+.+++..............        ....+..+.|+++
T Consensus        49 --~~~~a~SpD--g~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~d  116 (355)
T d2bbkh_          49 --LPNPVVADD--GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL--------VGTYPWMTSLTPD  116 (355)
T ss_dssp             --SCEEEECTT--SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC--------BSCCGGGEEECTT
T ss_pred             --CCceEEcCC--CCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceee--------cCCCCceEEEecC
Confidence              457899755  8777764          35789999999999888776554332111        1122224667777


Q ss_pred             CCeeecccccccCcc-----------------------------ccCCCCCceeeeceeeeccccccccccceeeccccc
Q 015363          183 GGCGERNFGCASNDS-----------------------------SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD  233 (408)
Q Consensus       183 ~~~l~~~~~~~~~~~-----------------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (408)
                      ++.+...........                             .+..+.|+....+. ......... .........+.
T Consensus       117 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~-~~~~~~~~~-~~~~~~~~~~~  194 (355)
T d2bbkh_         117 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVA-FGTEGTPEI-THTEVFHPEDE  194 (355)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEE-CCSSSCCEE-EECCCCSCTTS
T ss_pred             CCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEE-ecCCCeEEE-Eecccccceec
Confidence            766532111100000                             00111122211111 000000000 00000011222


Q ss_pred             cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee-eEeecCCC---cccCCcCCeEEEEEcCCCCceEEEEeCC----
Q 015363          234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSF-NIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSK----  304 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~-~~~~~~~~---~~~~~~~~v~~~~~~p~~~~~l~s~~~d----  304 (408)
                      ..+....+.+++..++.+ .++.+++|++....... ........   ...........++++|++ ..++....+    
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~  273 (355)
T d2bbkh_         195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEW  273 (355)
T ss_dssp             CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTT
T ss_pred             ceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCce
Confidence            334445667777777777 89999999998543221 11110000   000011223458899999 555554432    


Q ss_pred             ------CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC--EEEEeC-CCeEEEEECCCCCCc
Q 015363          305 ------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILSRD-YMTLKLWDINMDSGP  375 (408)
Q Consensus       305 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~--~l~s~~-d~~v~~wd~~~~~~~  375 (408)
                            ..|.+||..+++.+    ..+...             ..+.+++|+|||+  +++++. |+.|.+||+.+ ++.
T Consensus       274 ~~~~~~~~v~v~d~~t~~~~----~~~~~~-------------~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t-g~~  335 (355)
T d2bbkh_         274 RHKTASRFVVVLDAKTGERL----AKFEMG-------------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES-GEE  335 (355)
T ss_dssp             CTTSCEEEEEEEETTTCCEE----EEEEEE-------------EEECEEEECCSSSCEEEEEETTTTEEEEEETTT-CCE
T ss_pred             eecCCCCeEEEEeCCCCcEE----EEecCC-------------CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC-CCE
Confidence                  37999999998664    344333             4688999999998  345554 69999999998 799


Q ss_pred             eeeeeecccccceE
Q 015363          376 VATFQVHEHLRPKV  389 (408)
Q Consensus       376 ~~~~~~~~~~~~~~  389 (408)
                      ++++.++......+
T Consensus       336 ~~~i~~~G~~p~~i  349 (355)
T d2bbkh_         336 LRSVNQLGHGPQVI  349 (355)
T ss_dssp             EEEECCCCSSCCEE
T ss_pred             EEEEeCcCCCccEE
Confidence            99998764443333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=2.8e-15  Score=129.16  Aligned_cols=235  Identities=12%  Similarity=0.001  Sum_probs=134.7

Q ss_pred             eccceEEEEECCCCCeE-EEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           34 EVDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l-~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      +...+.+++|+|||+++ ++++.++.|.+||+.+++.                       +..+..+...       ...
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-----------------------~~~~~~~~~~-------~~~   81 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-----------------------LGRIDLSTPE-------ERV   81 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-----------------------EEEEECCBTT-------EEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-----------------------EEEEecCCCc-------ccc
Confidence            34557899999999987 5677899999999988763                       2233332211       001


Q ss_pred             cceeEEEEeecCCCcEEEEEe------------CCCeEEEEEcCCCcEEEEeccCCCCc--ccCCCCCeEeecCCceeeE
Q 015363          113 EKINKIRWCQSANSALYLLST------------NDKTIKLWKVQEKKVKKVFDWNVHPE--KAAGNGPIFGSHVSAIPKS  178 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~------------~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~  178 (408)
                      ..+..++|+|+  +.+++++.            .+..+.+||..+++............  .+.+++...........+.
T Consensus        82 ~~~~~v~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  159 (337)
T d1pbyb_          82 KSLFGAALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVM  159 (337)
T ss_dssp             ECTTCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEE
T ss_pred             cceeeEEEcCC--CcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCccee
Confidence            34667899654  77887765            46788999999998877766543321  2222222221111111111


Q ss_pred             EccCCCeeeccccccc----------CccccCCCCCc-----------------------eeeeceeeeccccccccccc
Q 015363          179 YMANGGCGERNFGCAS----------NDSSFPPGGVS-----------------------SLRLPVVVTSQETNLVAGCR  225 (408)
Q Consensus       179 ~~~~~~~l~~~~~~~~----------~~~~~~~~~~~-----------------------~i~~~~~~~~~~~~~~~~~~  225 (408)
                      -...++....+.....          ..+.......+                       .+.+|+ ..      .....
T Consensus       160 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~  232 (337)
T d1pbyb_         160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD-LE------TGEMA  232 (337)
T ss_dssp             ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE-TT------TCCEE
T ss_pred             eeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE-cC------CCcEE
Confidence            1111111111100000          00001111111                       122222 10      11111


Q ss_pred             eeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC
Q 015363          226 RIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG  305 (408)
Q Consensus       226 ~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  305 (408)
                      ......+...+..++++|++.+++.+ ++.|++||+.+ .+....+        .+...+.+++|+|+| ++|++++.|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~-~~~~~~~--------~~~~~~~~~~~s~dG-~~l~v~~~~~  301 (337)
T d1pbyb_         233 MREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRV--------PLPHSYYSVNVSTDG-STVWLGGALG  301 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEE--------ECSSCCCEEEECTTS-CEEEEESBSS
T ss_pred             EEEecCCCcceEEEEecccceEEEEc-cccEEEEECCC-CcEEEEE--------cCCCCEEEEEECCCC-CEEEEEeCCC
Confidence            11124455667788899998887655 57899999994 4444432        134567899999999 8999999999


Q ss_pred             eEEEEEcCCCcee
Q 015363          306 SIRLIDMRQSALC  318 (408)
Q Consensus       306 ~i~iwd~~~~~~~  318 (408)
                      .|++||..+++.+
T Consensus       302 ~i~v~D~~t~~~v  314 (337)
T d1pbyb_         302 DLAAYDAETLEKK  314 (337)
T ss_dssp             EEEEEETTTCCEE
T ss_pred             cEEEEECCCCcEE
Confidence            9999999998765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=8.6e-14  Score=119.56  Aligned_cols=254  Identities=9%  Similarity=0.037  Sum_probs=152.8

Q ss_pred             eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcE
Q 015363           49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL  128 (408)
Q Consensus        49 ~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~  128 (408)
                      .+++++.|++|++|+++....                    .+.++. ..|.            ..|..|+|+|+  |++
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~--------------------l~~~~~-~~~~------------~~v~~la~spD--G~~   50 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA--------------------LTLTQV-VDVP------------GQVQPMVVSPD--KRY   50 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC--------------------EEEEEE-EECS------------SCCCCEEECTT--SSE
T ss_pred             EEEECCCCCcEEEEEEcCCCC--------------------eEEEEE-EcCC------------CCEeEEEEeCC--CCE
Confidence            357778999999999875431                    111121 2343            66999999755  888


Q ss_pred             EEEEe-CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCC-CCce
Q 015363          129 YLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-GVSS  206 (408)
Q Consensus       129 l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~  206 (408)
                      |++++ .|+.|++|++...........+..            ....+..++++|||+.+            ++++ .++.
T Consensus        51 L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~------------~~~~p~~l~~spDg~~l------------~v~~~~~~~  106 (333)
T d1ri6a_          51 LYVGVRPEFRVLAYRIAPDDGALTFAAESA------------LPGSLTHISTDHQGQFV------------FVGSYNAGN  106 (333)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEEEEEEEE------------CSSCCSEEEECTTSSEE------------EEEETTTTE
T ss_pred             EEEEECCCCeEEEEEEeCCCCcEEEeeecc------------cCCCceEEEEcCCCCEE------------eecccCCCc
Confidence            86555 689999999986543222111100            01122268999999987            5544 5778


Q ss_pred             eeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCC
Q 015363          207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV  284 (408)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  284 (408)
                      +.+|+ .........    .. ...+...+.++.++|++++++.+  .+..|.+|+..............  ........
T Consensus       107 v~~~~-~~~~~~~~~----~~-~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~g~~  178 (333)
T d1ri6a_         107 VSVTR-LEDGLPVGV----VD-VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE--VTTVEGAG  178 (333)
T ss_dssp             EEEEE-EETTEEEEE----EE-EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--EECSTTCC
T ss_pred             eeeec-cccccceec----cc-ccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee--eeeecCCC
Confidence            88887 333221111    11 13445667889999999988876  67889999987544433221100  01223455


Q ss_pred             eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-C-CC
Q 015363          285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YM  362 (408)
Q Consensus       285 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~-d~  362 (408)
                      ...++|++++...+.+....+...+|+...................      ..........+++++|+++++.. . ++
T Consensus       179 p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~s~d~~~~~~~~~~~~  252 (333)
T d1ri6a_         179 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE------NFSDTRWAADIHITPDGRHLYACDRTAS  252 (333)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT------TCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred             ccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeec------CCCccccceeEEEecccCceeeecccCC
Confidence            6889999999334444556678888887654321111111110000      00112456778999999988765 3 58


Q ss_pred             eEEEEECCCCCCc
Q 015363          363 TLKLWDINMDSGP  375 (408)
Q Consensus       363 ~v~~wd~~~~~~~  375 (408)
                      .+.+|++...+..
T Consensus       253 ~~~~~~~~~~~~~  265 (333)
T d1ri6a_         253 LITVFSVSEDGSV  265 (333)
T ss_dssp             EEEEEEECTTSCC
T ss_pred             eEEEEEEcCCCCE
Confidence            9999999874333

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.60  E-value=3e-14  Score=123.03  Aligned_cols=79  Identities=8%  Similarity=0.018  Sum_probs=63.2

Q ss_pred             cccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEE
Q 015363          230 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL  309 (408)
Q Consensus       230 ~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  309 (408)
                      ..+...+..+.+++++..++...++.|.+||..+ .+....+.        +...+.+++|+||| ++|++++.|+.|++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~--------~~~~~~~va~s~DG-~~l~v~~~d~~v~v  317 (346)
T d1jmxb_         248 ADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ-RKLIKAAN--------LDHTYYCVAFDKKG-DKLYLGGTFNDLAV  317 (346)
T ss_dssp             EECSSCEEEEEECSSCTTEEEEEESEEEEEETTT-TEEEEEEE--------CSSCCCEEEECSSS-SCEEEESBSSEEEE
T ss_pred             ecccceeEEEEEeCCCCEEEEecCCeEEEEECCC-CcEEEEEc--------CCCCEEEEEEcCCC-CEEEEEeCCCcEEE
Confidence            4566778889999999888887667899999984 44444321        23458899999999 89999999999999


Q ss_pred             EEcCCCcee
Q 015363          310 IDMRQSALC  318 (408)
Q Consensus       310 wd~~~~~~~  318 (408)
                      ||+++++.+
T Consensus       318 ~D~~t~~~i  326 (346)
T d1jmxb_         318 FNPDTLEKV  326 (346)
T ss_dssp             EETTTTEEE
T ss_pred             EECccCCEE
Confidence            999998765

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=8.5e-14  Score=121.66  Aligned_cols=265  Identities=9%  Similarity=0.035  Sum_probs=147.5

Q ss_pred             eEEEEECCCCCeEEEee----------cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           38 ISAIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      ...++|+|||++|++.+          .|+.|++||..+++..                       ..+..+....    
T Consensus        67 ~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~-----------------------~~i~~p~~~~----  119 (368)
T d1mdah_          67 LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPR----  119 (368)
T ss_dssp             TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-----------------------EEEEETTSCS----
T ss_pred             CCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEe-----------------------eeecCCccce----
Confidence            34689999999888754          4778999998877531                       2222111000    


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                       .........++|+|  ||++++++. .++.+.+||+.+++.......+....                   ..+.+...
T Consensus       120 -~~~g~~p~~~a~Sp--DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~  177 (368)
T d1mdah_         120 -FSVGPRVHIIGNCA--SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH-------------------IHPGAAAT  177 (368)
T ss_dssp             -CCBSCCTTSEEECT--TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC-------------------CEEEETTE
T ss_pred             -ecccCCccceEECC--CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce-------------------EccCCCce
Confidence             00002234689965  488888775 67999999999998887766543221                   11111111


Q ss_pred             ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCc
Q 015363          187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ  266 (408)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~  266 (408)
                                 ++..+.|+.+..++ +.............. ...+...+..+.+.+++..+.+ ..+.+.+++......
T Consensus       178 -----------~v~~~~Dg~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~  243 (368)
T d1mdah_         178 -----------HYLGSCPASLAASD-LAAAPAAAGIVGAQC-TGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGA  243 (368)
T ss_dssp             -----------EECCCCTTSCEEEE-CCSSCCCCEECCCCS-CTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCC
T ss_pred             -----------EEEEcCCCCEEEEE-ecCCceeeeeeeccc-ccccccceeecccccCcEEEEe-cCCCEEEEeecCCce
Confidence                       13344455554444 221111100000011 1233344556677777654443 345566666653222


Q ss_pred             eeeEeecCCCc-----ccCCcCCeEEEEEcCCCCceEEEEeCC--------CeEEEEEcCCCceecccccccccccCCCC
Q 015363          267 SFNIVDVKPAN-----MEDLTEVITSAEFHPTHCNMLAYSSSK--------GSIRLIDMRQSALCDTHSKLFEEQEAPGT  333 (408)
Q Consensus       267 ~~~~~~~~~~~-----~~~~~~~v~~~~~~p~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  333 (408)
                       ..........     ..........++++|++..+++....+        ..|.+||..+++.+    ..+...     
T Consensus       244 -~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~----~~~~~~-----  313 (368)
T d1mdah_         244 -TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISNG-----  313 (368)
T ss_dssp             -EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEEE-----
T ss_pred             -EEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe----EEecCC-----
Confidence             1111000000     000111223578899983333333222        36999999998754    444333     


Q ss_pred             ccccccccceeEEEEEccCCC-EE-EEeC-CCeEEEEECCCCCCceeeeeeccc
Q 015363          334 RSFFTEIIASISDIKFARNGR-HI-LSRD-YMTLKLWDINMDSGPVATFQVHEH  384 (408)
Q Consensus       334 ~~~~~~h~~~i~~~~~spdg~-~l-~s~~-d~~v~~wd~~~~~~~~~~~~~~~~  384 (408)
                              ..+.+++|+|||+ +| +++. ++.|++||..+ ++.+++++....
T Consensus       314 --------~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t-gk~~~~i~~g~~  358 (368)
T d1mdah_         314 --------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKG  358 (368)
T ss_dssp             --------EEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSC
T ss_pred             --------CceeEEEECCCCCEEEEEEeCCCCeEEEEECCC-CCEEEEEECCCC
Confidence                    4688899999997 34 4444 69999999998 799998876544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.52  E-value=4.2e-13  Score=121.24  Aligned_cols=119  Identities=5%  Similarity=-0.065  Sum_probs=79.2

Q ss_pred             eeeccceEEEEECCCCCeEEEeec---------CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDR---------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE  102 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  102 (408)
                      ..|...|.++.|||||++||.++.         ++.+.|||+.+++.                        ..+..+.  
T Consensus        58 ~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~------------------------~~l~~~~--  111 (470)
T d2bgra1          58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL------------------------ITEERIP--  111 (470)
T ss_dssp             TTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE------------------------CCSSCCC--
T ss_pred             hhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc------------------------cccccCC--
Confidence            346678999999999999998753         56788999988753                        2455555  


Q ss_pred             cccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccC-CCCCeEe--ecCCceeeEE
Q 015363          103 FDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA-GNGPIFG--SHVSAIPKSY  179 (408)
Q Consensus       103 ~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~--~~~~~~~~~~  179 (408)
                                ..+..+.|+|+  |+.+|.. .++.+.+|+..+++..+............ ....++.  .......++|
T Consensus       112 ----------~~~~~~~~SPD--G~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w  178 (470)
T d2bgra1         112 ----------NNTQWVTWSPV--GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW  178 (470)
T ss_dssp             ----------TTEEEEEECSS--TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred             ----------ccccccccccC--cceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEE
Confidence                      66899999765  8888885 57789999999887665543322111000 0000000  0012235789


Q ss_pred             ccCCCeeecc
Q 015363          180 MANGGCGERN  189 (408)
Q Consensus       180 ~~~~~~l~~~  189 (408)
                      +|||+.+...
T Consensus       179 SPDGk~ia~~  188 (470)
T d2bgra1         179 SPNGTFLAYA  188 (470)
T ss_dssp             CTTSSEEEEE
T ss_pred             CCCCCcccee
Confidence            9999988765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.51  E-value=5.5e-12  Score=110.02  Aligned_cols=254  Identities=8%  Similarity=-0.017  Sum_probs=134.6

Q ss_pred             eEEEEECCCCCeEEEee----------cCCeEEEEEeCCCCCCCCcccc------cccccccccCCCccceeeee--ccC
Q 015363           38 ISAIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRD------LEMMDYSMSRHPEFRYKTEF--QSH   99 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~----------~dg~i~iw~~~~~~~~~~~~~~------~~~~~~~~~~~p~~~~~~~~--~~h   99 (408)
                      ...++|+|||++|++++          .++.|.+||..+++........      .......+.+.|+.+.+...  ...
T Consensus        68 ~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  147 (373)
T d2madh_          68 LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC
Confidence            34799999999998875          4578999999887642110000      00001123344444433222  111


Q ss_pred             C-cccccc---cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCce
Q 015363          100 E-PEFDYL---KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI  175 (408)
Q Consensus       100 ~-~~~~~~---~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  175 (408)
                      . ..+...   +...+.....++.++|+.. ..+++.+.|+.+.+|+...++..............    ...     ..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~  217 (373)
T d2madh_         148 PAVGLVVQGGSSDDQLLSSPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQ----NLL-----TQ  217 (373)
T ss_pred             CceEEeeccCCeEEEEeccceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCc----cce-----ee
Confidence            1 000000   1112334466788876532 35577889999999999988776655433221100    000     01


Q ss_pred             eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccc----cc-eeeccccccceEEEEeCCCCCEEE-
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG----CR-RIYAHAHDYHINSISNNSDGETFI-  249 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~v~~i~~~~~~~~l~-  249 (408)
                      ...+.+++..             +..+.++.+.+|+ ...........    .. .............+++++++..++ 
T Consensus       218 ~~~~~~~~~~-------------~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  283 (373)
T d2madh_         218 PAQANKSGRI-------------VWPVYSGKILQAD-ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL  283 (373)
T ss_pred             eEEECCCceE-------------EEecCCceEEEEE-cCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEE
Confidence            2334444443             3334455555555 22211100000    00 000001112233455555554433 


Q ss_pred             ---------Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCc-eEEEEeCCCeEEEEEcCCCcee
Q 015363          250 ---------SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       250 ---------~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                               .. .++.+.+||..+.+.. ..+        .+...+..++|+|||.. ++++++.|+.|++||+.+++.+
T Consensus       284 ~~~~~~~~~~~~~~~~v~~~d~~t~~~~-~~~--------~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         284 LTSEQSAWKLHAAAKEVTSVTGLVGQTS-SQI--------SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             ecCCCceEEeecCCCeEEEEECCCCcEE-EEe--------cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence                     34 5678999999855433 321        24566889999999933 4568889999999999999765


Q ss_pred             cccccccccc
Q 015363          319 DTHSKLFEEQ  328 (408)
Q Consensus       319 ~~~~~~~~~~  328 (408)
                          +.+..+
T Consensus       355 ----~~~~~~  360 (373)
T d2madh_         355 ----QSTVEL  360 (373)
T ss_pred             ----EEECCC
Confidence                555544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=7.4e-13  Score=114.76  Aligned_cols=242  Identities=8%  Similarity=0.047  Sum_probs=135.7

Q ss_pred             ccceEEEEECCCCCeEEEe----------ecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccc
Q 015363           35 VDIISAIEFDKSGDHLATG----------DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD  104 (408)
Q Consensus        35 ~~~V~~~~~s~~~~~l~sg----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  104 (408)
                      .+.+..++|||||++|++.          +.++.|++||..+++..                       ..+..+...  
T Consensus        46 ~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~-----------------------~~~~~~~~~--  100 (355)
T d2bbkh_          46 GGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT-----------------------ADIELPDAP--  100 (355)
T ss_dssp             ECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE-----------------------EEEEETTCC--
T ss_pred             CCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEE-----------------------EEEecCCcc--
Confidence            3445579999999988764          45789999999877531                       222211100  


Q ss_pred             cccccccccceeEEEEeecCCCcEEEEEe--CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccC
Q 015363          105 YLKSLEIEEKINKIRWCQSANSALYLLST--NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN  182 (408)
Q Consensus       105 ~~~~~~~~~~v~~v~~~p~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  182 (408)
                         ..........++|+|+  +.+++++.  .+..+.+|+..+++.............        ........+.++++
T Consensus       101 ---~~~~~~~~~~~~~s~d--g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~d  167 (355)
T d2bbkh_         101 ---RFLVGTYPWMTSLTPD--GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI--------FPTAPDTFFMHCRD  167 (355)
T ss_dssp             ---CCCBSCCGGGEEECTT--SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE--------EEEETTEEEEEETT
T ss_pred             ---eeecCCCCceEEEecC--CCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE--------eecCCcceEEEcCC
Confidence               0001123456889654  77777664  567899999999887766554322110        00011112334444


Q ss_pred             CCeeeccc--------------------------ccccCccccCCCCCceeeeceeeeccccccccc----cceee-ccc
Q 015363          183 GGCGERNF--------------------------GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG----CRRIY-AHA  231 (408)
Q Consensus       183 ~~~l~~~~--------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~-~~~  231 (408)
                      ++.+....                          .......++..+.++.+.+|+ +..........    ..... ...
T Consensus       168 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~  246 (355)
T d2bbkh_         168 GSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID-LSSGDAKFLPAVEALTEAERADGW  246 (355)
T ss_dssp             SCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE-CTTSSCEECCCEESSCHHHHHTTE
T ss_pred             CCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEe-cCCCcEEEEeccCCcccceEeeee
Confidence            43322110                          000111234556788888888 44322111000    00000 000


Q ss_pred             cccceEEEEeCCCCCEEEEe-cC----------CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCc-eEE
Q 015363          232 HDYHINSISNNSDGETFISA-DD----------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLA  299 (408)
Q Consensus       232 ~~~~v~~i~~~~~~~~l~~~-~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~  299 (408)
                      .......+++++++..++.. .+          ..|.+||..+.+ ....+       . +...+.+++|+|+|.. +++
T Consensus       247 ~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~-~~~~~-------~-~~~~~~~~a~spDG~~~l~v  317 (355)
T d2bbkh_         247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE-RLAKF-------E-MGHEIDSINVSQDEKPLLYA  317 (355)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEE-------E-EEEEECEEEECCSSSCEEEE
T ss_pred             eccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc-EEEEe-------c-CCCCEEEEEEcCCCCeEEEE
Confidence            11223457889999887764 22          479999999544 33322       1 2345789999999933 456


Q ss_pred             EEeCCCeEEEEEcCCCceecccccccccc
Q 015363          300 YSSSKGSIRLIDMRQSALCDTHSKLFEEQ  328 (408)
Q Consensus       300 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  328 (408)
                      +++.|+.|++||+++++.+    +++.++
T Consensus       318 ~~~~d~~i~v~D~~tg~~~----~~i~~~  342 (355)
T d2bbkh_         318 LSTGDKTLYIHDAESGEEL----RSVNQL  342 (355)
T ss_dssp             EETTTTEEEEEETTTCCEE----EEECCC
T ss_pred             EECCCCEEEEEECCCCCEE----EEEeCc
Confidence            7777999999999999765    555443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.28  E-value=2.9e-11  Score=105.14  Aligned_cols=257  Identities=9%  Similarity=0.005  Sum_probs=144.3

Q ss_pred             eeccceEEEEECCCCCeEEEe-ecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec-cCCcccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATG-DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLE  110 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~~~~  110 (408)
                      .|.-.+....++|||++|++. ..+++|.++|+++.+..                       ..+. .+.          
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~-----------------------~ii~iP~g----------  115 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTD-----------------------KITHIPNV----------  115 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEE-----------------------EEEECTTC----------
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEe-----------------------eEEecCCC----------
Confidence            355567777788999988665 46789999999887531                       1111 112          


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCC-----------------eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCC
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDK-----------------TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS  173 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~-----------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  173 (408)
                        ..+..++|+|+++-.+++..+.+.                 .+..+|..+.+..........+               
T Consensus       116 --~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p---------------  178 (441)
T d1qnia2         116 --QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNL---------------  178 (441)
T ss_dssp             --CCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCC---------------
T ss_pred             --CCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCc---------------
Confidence              458889997764433555444432                 2344666666555443332222               


Q ss_pred             ceeeEEccCCCeeecccccccC------------------------------ccccCCCCCceeeeceeeeccccccccc
Q 015363          174 AIPKSYMANGGCGERNFGCASN------------------------------DSSFPPGGVSSLRLPVVVTSQETNLVAG  223 (408)
Q Consensus       174 ~~~~~~~~~~~~l~~~~~~~~~------------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~  223 (408)
                       ..+.++|+|+.+......+..                              .+... +.++.+.+++ ..      ...
T Consensus       179 -~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v-~~~~v~vvd~-~~------~~~  249 (441)
T d1qnia2         179 -DNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI-GDSKVPVVDG-RG------ESE  249 (441)
T ss_dssp             -CCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC-TTCCCCEEEC-SS------SCS
T ss_pred             -cceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEe-CCCCcEEEEc-cc------CCc
Confidence             146677777765322111110                              11111 2233333332 11      111


Q ss_pred             cceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCC-Cc---ccCCcCCeEEEEEcCCCCce
Q 015363          224 CRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP-AN---MEDLTEVITSAEFHPTHCNM  297 (408)
Q Consensus       224 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~-~~---~~~~~~~v~~~~~~p~~~~~  297 (408)
                      ..+.+ ... .....+.++|||++++++  .+++|.+||+++..+.+.-. ++. ..   .....-.....+|+++| +.
T Consensus       250 v~~~I-Pvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~-~~~~~~~~~~~~~glgplh~~fd~~g-~~  325 (441)
T d1qnia2         250 FTRYI-PVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK-IELRDTIVAEPELGLGPLHTTFDGRG-NA  325 (441)
T ss_dssp             SEEEE-CCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS-SCGGGGEEECCBCCSCEEEEEECSSS-EE
T ss_pred             eEEEE-eCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc-CCcceEEEeecccccCcccceecCCc-eE
Confidence            11222 222 335678999999988765  79999999987422211000 000 00   01112234567899999 88


Q ss_pred             EEEEeCCCeEEEEEcCCCc------eecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363          298 LAYSSSKGSIRLIDMRQSA------LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  359 (408)
Q Consensus       298 l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~  359 (408)
                      +.+...|.+|..|++....      .....+..+..|       ...+|...+.+.+++|||+||+++
T Consensus       326 yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~-------y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         326 YTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ-------YQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-------SCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             EEcccccceEEEeccchhhhhhccCCCceeEeccccc-------cCCCCCccccccccCCCCcEEEec
Confidence            8888899999999985221      010001112222       124677888889999999999998

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=1.5e-08  Score=84.00  Aligned_cols=262  Identities=13%  Similarity=0.159  Sum_probs=149.0

Q ss_pred             eeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeecc
Q 015363           19 FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS   98 (408)
Q Consensus        19 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~   98 (408)
                      |.+.||....+  .++-.....|+++++|+++++-..+..|++||.++.                        ++..+..
T Consensus         8 ~~~~~G~~G~~--~g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~------------------------~~~~~~~   61 (279)
T d1q7fa_           8 YHCKFGEFGVM--EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR------------------------FKFQFGE   61 (279)
T ss_dssp             EEEEECCBSSS--TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC------------------------EEEEECC
T ss_pred             EEeecCCCcCC--CCeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCC------------------------EEEEecc
Confidence            45556654322  223345689999999998877777889999986532                        1112211


Q ss_pred             CCcccccccccccccceeEEEEeecCCCcEEEE-EeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceee
Q 015363           99 HEPEFDYLKSLEIEEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK  177 (408)
Q Consensus        99 h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  177 (408)
                      ....      .........+++.++. +..+++ .+.++.|..++.. ++....+.....              ..+..+
T Consensus        62 ~~~~------~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~--------------~~p~~~  119 (279)
T d1q7fa_          62 CGKR------DSQLLYPNRVAVVRNS-GDIIVTERSPTHQIQIYNQY-GQFVRKFGATIL--------------QHPRGV  119 (279)
T ss_dssp             BSSS------TTCBSSEEEEEEETTT-TEEEEEECGGGCEEEEECTT-SCEEEEECTTTC--------------SCEEEE
T ss_pred             cCCC------cccccccccccccccc-cccceeccCCcccccccccc-ccceeecCCCcc--------------ccccee
Confidence            0000      0000123445554332 333433 3455677777654 333333322110              011246


Q ss_pred             EEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceee-ccccccceEEEEeCCCCCEEEEe-cCCe
Q 015363          178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFISA-DDLR  255 (408)
Q Consensus       178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~-~d~~  255 (408)
                      +..++|..+            ++....+.+.+++ .   +    .+....+ ...+......+++.++++++++. ..+.
T Consensus       120 avd~~G~i~------------v~~~~~~~~~~~~-~---~----g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         120 TVDNKGRII------------VVECKVMRVIIFD-Q---N----GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             EECTTSCEE------------EEETTTTEEEEEC-T---T----SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             ccccCCcEE------------EEeeccceeeEec-c---C----CceeecccccccccccceeeeccceeEEeeeccccc
Confidence            666677654            4444445555544 1   1    1111111 13344667889999999888887 8899


Q ss_pred             EEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CCeEEEEEcCCCceecccccccccccCCCCc
Q 015363          256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTR  334 (408)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  334 (408)
                      |++||.. +. .+..+.     ..+.......|+++|+| +++++-.. ++.|.+|+. .++.+    ..+.....    
T Consensus       180 V~~~d~~-G~-~~~~~g-----~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~-~G~~~----~~~~~~~~----  242 (279)
T d1q7fa_         180 VKVFNYE-GQ-YLRQIG-----GEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQ-DGQLI----SALESKVK----  242 (279)
T ss_dssp             EEEEETT-CC-EEEEES-----CTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECT-TSCEE----EEEEESSC----
T ss_pred             eeeeecC-Cc-eeeeec-----ccccccCCcccccccCC-eEEEEECCCCcEEEEECC-CCCEE----EEEeCCCC----
Confidence            9999987 43 332221     23344557899999999 77776543 457999985 45433    33332211    


Q ss_pred             cccccccceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363          335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM  371 (408)
Q Consensus       335 ~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~  371 (408)
                            ......|++.|||.++++..++.|++|....
T Consensus       243 ------~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         243 ------HAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             ------CSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             ------CCCEeEEEEeCCCcEEEEeCCCeEEEEEeee
Confidence                  1346889999999877766678999999865

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.15  E-value=5.7e-09  Score=90.10  Aligned_cols=170  Identities=9%  Similarity=0.019  Sum_probs=97.5

Q ss_pred             eeEEccCCCeeecccccccCccccCC-CCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--c
Q 015363          176 PKSYMANGGCGERNFGCASNDSSFPP-GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D  252 (408)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~  252 (408)
                      .+.++|+|+.+            +++ .....|.+|+ ............  ..........+.++|+|+++++.+.  .
T Consensus       149 ~v~~sPdG~~l------------~v~d~g~d~v~~~~-~~~~g~~~~~~~--~~~~~~g~gPr~i~f~pdg~~~yv~~e~  213 (365)
T d1jofa_         149 GMVFDPTETYL------------YSADLTANKLWTHR-KLASGEVELVGS--VDAPDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             EEEECTTSSEE------------EEEETTTTEEEEEE-ECTTSCEEEEEE--EECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             EEEECCCCCEE------------EEeeCCCCEEEEEE-ccCCCceeeccc--eeecCCCCceEEEEECCCCceEEEeccC
Confidence            68999999987            443 3445677766 332111111111  1112334568899999999988765  6


Q ss_pred             CCeEEEEeCCCCCce-e---eEeecCCCc-------ccCCcCCeEEEEEcCCCCceEEEEeC-C-----CeEEEEEcCCC
Q 015363          253 DLRINLWNLEISNQS-F---NIVDVKPAN-------MEDLTEVITSAEFHPTHCNMLAYSSS-K-----GSIRLIDMRQS  315 (408)
Q Consensus       253 d~~i~iwd~~~~~~~-~---~~~~~~~~~-------~~~~~~~v~~~~~~p~~~~~l~s~~~-d-----g~i~iwd~~~~  315 (408)
                      +++|.+|++...... .   ...++.+..       ...+......+.++|+| ++|+++.. +     ..|..|++...
T Consensus       214 ~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~  292 (365)
T d1jofa_         214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDC  292 (365)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred             CCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCC
Confidence            899999999743321 1   111111100       11223345678999999 76666532 2     24777777654


Q ss_pred             ceecccccccccccCCCCccccccccceeEEEEEcc-CCCEEEEeC--CCeEEEEECCC
Q 015363          316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD--YMTLKLWDINM  371 (408)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-dg~~l~s~~--d~~v~~wd~~~  371 (408)
                      ..+.+........          .......+++++| +|++|+++.  ++.|.+|+++.
T Consensus       293 g~~~~~~~~~~~~----------~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         293 GSIEKQLFLSPTP----------TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             SCEEEEEEEEECS----------SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CceeeEeEeeEEE----------cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            3221100000000          0012456789998 899888773  49999999875

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.09  E-value=2.8e-09  Score=92.37  Aligned_cols=270  Identities=9%  Similarity=-0.072  Sum_probs=142.7

Q ss_pred             eccceEEEEECCCCCeE---EEeecCCe--EEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           34 EVDIISAIEFDKSGDHL---ATGDRGGR--VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        34 h~~~V~~~~~s~~~~~l---~sg~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      +.++...++..++++..   +....+|.  |.+||..+++                       .+.....+.        
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~-----------------------~~~~~~~~~--------   66 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGV-----------------------TLGHSLGAF--------   66 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTE-----------------------EEEEEEECT--------
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCc-----------------------EEEEEeCCC--------
Confidence            44555556677887743   23445555  5555766554                       233444444        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEe----------CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeE
Q 015363          109 LEIEEKINKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS  178 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (408)
                            ...++|+|+  |+.+++++          .|++|++||..+++.......+....        ......+..++
T Consensus        67 ------~~~~a~spD--g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~--------~~~g~~p~~~a  130 (368)
T d1mdah_          67 ------LSLAVAGHS--GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR--------FSVGPRVHIIG  130 (368)
T ss_dssp             ------TCEEEECTT--SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--------CCBSCCTTSEE
T ss_pred             ------CCcceECCC--CCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce--------ecccCCccceE
Confidence                  335788654  88777754          47889999999998887766543321        11112223589


Q ss_pred             EccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe-cCCeE
Q 015363          179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRI  256 (408)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i  256 (408)
                      |+|||+.+           +++...++.+.+|| +...+.      ...+ ..+...    .+.|. ...++.. .||.+
T Consensus       131 ~SpDGk~l-----------~va~~~~~~v~~~d-~~~~~~------~~~~-~~~~~~----~~~~~~~~~~v~~~~Dg~~  187 (368)
T d1mdah_         131 NCASSACL-----------LFFLFGSSAAAGLS-VPGASD------DQLT-KSASCF----HIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             ECTTSSCE-----------EEEECSSSCEEEEE-ETTTEE------EEEE-ECSSCC----CCEEEETTEEECCCCTTSC
T ss_pred             ECCCCCEE-----------EEEeCCCCeEEEEE-CCCCcE------eEEe-eccCcc----eEccCCCceEEEEcCCCCE
Confidence            99999987           23334678999999 433221      1111 111111    01111 2233333 56666


Q ss_pred             EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccc
Q 015363          257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF  336 (408)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  336 (408)
                      .++++............  .....+...+..+.+.+++ ..+.+  ..+.+.+++...+.....  ............  
T Consensus       188 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g-~~~~~--~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~--  258 (368)
T d1mdah_         188 AASDLAAAPAAAGIVGA--QCTGAQNCSSQAAQANYPG-MLVWA--VASSILQGDIPAAGATMK--AAIDGNESGRKA--  258 (368)
T ss_dssp             EEEECCSSCCCCEECCC--CSCTTSCBCSCCEEETTTT-EEEEC--BSSCCEEEECCSSCCEEE--CCCCSSCTHHHH--
T ss_pred             EEEEecCCceeeeeeec--ccccccccceeecccccCc-EEEEe--cCCCEEEEeecCCceEEE--eecccccceeee--
Confidence            66666543332221110  1123344455667888887 55544  356677777665543210  111111000000  


Q ss_pred             cccccceeEEEEEccCCCEEEEeC--C--------CeEEEEECCCCCCceeeeeecc
Q 015363          337 FTEIIASISDIKFARNGRHILSRD--Y--------MTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       337 ~~~h~~~i~~~~~spdg~~l~s~~--d--------~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                      ..........++++|++..++...  +        ..|.+||..+ ++.+..+....
T Consensus       259 ~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~~~  314 (368)
T d1mdah_         259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGH  314 (368)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEE
T ss_pred             eeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecCCC
Confidence            000012234578899988776531  1        3599999998 68888776543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.07  E-value=1.1e-09  Score=98.40  Aligned_cols=122  Identities=15%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             cccccceEEEEeCCCCCEEEEe-c---------CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEE
Q 015363          230 HAHDYHINSISNNSDGETFISA-D---------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA  299 (408)
Q Consensus       230 ~~~~~~v~~i~~~~~~~~l~~~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  299 (408)
                      ..|...|.++.|+|||++|+.+ +         ++.+.+||+.+ ++..        .+..+...+..+.||||| +.+|
T Consensus        58 ~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~-~~~~--------~l~~~~~~~~~~~~SPDG-~~ia  127 (470)
T d2bgra1          58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-RQLI--------TEERIPNNTQWVTWSPVG-HKLA  127 (470)
T ss_dssp             TTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEEC--------CSSCCCTTEEEEEECSST-TCEE
T ss_pred             hhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC-Cccc--------ccccCCccccccccccCc-ceee
Confidence            3444668889999999988875 2         36788999994 4332        256778889999999999 8888


Q ss_pred             EEeCCCeEEEEEcCCCceecccccccccccCCCCcccc---------ccccceeEEEEEccCCCEEEEeC-C-CeEEEEE
Q 015363          300 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF---------TEIIASISDIKFARNGRHILSRD-Y-MTLKLWD  368 (408)
Q Consensus       300 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~h~~~i~~~~~spdg~~l~s~~-d-~~v~~wd  368 (408)
                      .. .++.+++|+..++...    +.......   ...+         ....+....+.|||||++|+... | ..+..|.
T Consensus       128 ~~-~~~~l~~~~~~~g~~~----~~t~~~~~---~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         128 YV-WNNDIYVKIEPNLPSY----RITWTGKE---DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             EE-ETTEEEEESSTTSCCE----ECCSCCBT---TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             Ee-ecccceEEECCCCcee----eeeeccCC---CcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence            85 5778999999988643    11111110   0001         11223456688999999999873 3 4454444


Q ss_pred             C
Q 015363          369 I  369 (408)
Q Consensus       369 ~  369 (408)
                      +
T Consensus       200 ~  200 (470)
T d2bgra1         200 Y  200 (470)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.05  E-value=2.7e-08  Score=86.21  Aligned_cols=217  Identities=9%  Similarity=-0.024  Sum_probs=114.4

Q ss_pred             eeEEEEeecCCCcEEEEE-eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          115 INKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      .....+.|+  |+++++. ..+++|.++|+.+.+...+.......              .+..+.++|+|+.+..+....
T Consensus        74 ~s~t~gtpD--Gr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~--------------gphgi~~spdg~t~YV~~~~~  137 (441)
T d1qnia2          74 ISMTDGRYD--GKYLFINDKANTRVARIRLDIMKTDKITHIPNVQ--------------AIHGLRLQKVPKTNYVFCNAE  137 (441)
T ss_dssp             EEEETTEEE--EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCC--------------CEEEEEECCSSBCCEEEEEEC
T ss_pred             cceecccCC--CCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCC--------------CccceEEeccCCEEEEEeccC
Confidence            444555544  8888666 47889999999999988876653211              112578888888654332222


Q ss_pred             cCcccc----CCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC---------------
Q 015363          194 SNDSSF----PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD---------------  253 (408)
Q Consensus       194 ~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d---------------  253 (408)
                      ....+.    ....+.....+. .......   .....+ . -......++++|+|++++++ .+               
T Consensus       138 ~~v~~~~dg~~~~~~~~~~~~~-~iD~~t~---~v~~qI-~-v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~  211 (441)
T d1qnia2         138 FVIPQPNDGTDFSLDNSYTMFT-AIDAETM---DVAWQV-I-VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR  211 (441)
T ss_dssp             SCEESSCSSSCCCGGGEEEEEE-EEETTTC---SEEEEE-E-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSB
T ss_pred             CcccccCcccccccccccceEE-eecCccc---eeeEEE-e-cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceE
Confidence            111000    001111111111 1111111   111111 1 11346678899999887765 22               


Q ss_pred             --------------------------CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeE
Q 015363          254 --------------------------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI  307 (408)
Q Consensus       254 --------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  307 (408)
                                                +.+.+++.. .......       +.... ....+.++|||..+++++..+++|
T Consensus       212 d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~-~~~v~~~-------IPvgk-sPhGv~vSPDGkyl~~~~~~~~tv  282 (441)
T d1qnia2         212 DWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG-ESEFTRY-------IPVPK-NPHGLNTSPDGKYFIANGKLSPTV  282 (441)
T ss_dssp             CEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS-SCSSEEE-------ECCBS-SCCCEEECTTSCEEEEECTTSSBE
T ss_pred             EEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc-CCceEEE-------EeCCC-CccCceECCCCCEEEEeCCcCCcE
Confidence                                      222222222 1122222       22222 246799999994455667779999


Q ss_pred             EEEEcCCCceecccccccccccCCCCcccccc---ccceeEEEEEccCCCEEEEeC-CCeEEEEECC
Q 015363          308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE---IIASISDIKFARNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~  370 (408)
                      .+||+.+...      .+.++-.  .+..+.+   ..-.....+|+++|..+.+.. |..|..|++.
T Consensus       283 sv~d~~k~~~------~~~~~~~--~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         283 SVIAIDKLDD------LFEDKIE--LRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EEEEGGGHHH------HTTTSSC--GGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             EEEEeehhhh------HhhccCC--cceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            9999976421      1111110  0000000   011345568999998777765 7999999985

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.04  E-value=2.5e-08  Score=83.66  Aligned_cols=233  Identities=10%  Similarity=0.047  Sum_probs=133.1

Q ss_pred             ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccccee
Q 015363           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  116 (408)
                      .+..++++|||+++++...+++|..|+..+..                         ..+....            ..+.
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-------------------------~~~~~~~------------~~~~   71 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-------------------------QIHATVE------------GKVS   71 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-------------------------EEEEECS------------SEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-------------------------EEEEcCC------------CCcc
Confidence            57789999999999999989988888754332                         1222222            5589


Q ss_pred             EEEEeecCCCcEEEEEeCCCeEEEEEcCCC--cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          117 KIRWCQSANSALYLLSTNDKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      +++|.  ++|.++++...++.+..|+....  ...........       .       .+..+.+.+++...        
T Consensus        72 gla~~--~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-------~~n~i~~~~~g~~~--------  127 (302)
T d2p4oa1          72 GLAFT--SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDA-------I-------FLNGITPLSDTQYL--------  127 (302)
T ss_dssp             EEEEC--TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTC-------S-------CEEEEEESSSSEEE--------
T ss_pred             eEEEc--CCCCeEEEecCCceEEEEEecccccceeeccccCCc-------c-------ccceeEEccCCCEE--------
Confidence            99995  55888888888888888876543  22222222110       1       11256777777664        


Q ss_pred             CccccCCCCCceeeeceeeecccccc---ccccceeeccccccceEEEEeCCCCCEEEE-e-cCCeEEEEeCCCCCceee
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNL---VAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~  269 (408)
                          ++...++.+..++ ........   ..................+.++.  ..+.. . ..+.|..++.........
T Consensus       128 ----v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~  200 (302)
T d2p4oa1         128 ----TADSYRGAIWLID-VVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGE  200 (302)
T ss_dssp             ----EEETTTTEEEEEE-TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCC
T ss_pred             ----eeccccccceeee-ccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCCCeEEeccccccccccc
Confidence                4444555554444 21111000   00000000112223455666653  34444 3 788998888874332211


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF  349 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  349 (408)
                      ..      ..........++++++| +++++...+++|..++.......   +......            ....++++|
T Consensus       201 ~~------~~~~~~~pdgia~d~dG-~l~va~~~~~~V~~i~p~G~~~~---~~~~~~~------------~~~pt~vaf  258 (302)
T d2p4oa1         201 PE------IFVEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTI---IAQAEQG------------VIGSTAVAF  258 (302)
T ss_dssp             CE------EEEESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCEEE---EECGGGT------------CTTEEEEEE
T ss_pred             cc------cccCCCCCcceEECCCC-CEEEEEcCCCcEEEECCCCCEEE---EEecCCC------------CCCceEEEE
Confidence            10      11112334579999999 88888878899999987644211   1111211            135789999


Q ss_pred             ---ccCCCEEEEe
Q 015363          350 ---ARNGRHILSR  359 (408)
Q Consensus       350 ---spdg~~l~s~  359 (408)
                         ++|++.|+.+
T Consensus       259 g~~~~D~~~Lyvt  271 (302)
T d2p4oa1         259 GQTEGDCTAIYVV  271 (302)
T ss_dssp             CCSTTTTTEEEEE
T ss_pred             cCCCCCCCEEEEE
Confidence               6788877654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1.8e-07  Score=76.64  Aligned_cols=222  Identities=10%  Similarity=0.118  Sum_probs=119.3

Q ss_pred             eeeccceEEEEECCCCCeEEEeecCC---eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363           32 VQEVDIISAIEFDKSGDHLATGDRGG---RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS  108 (408)
Q Consensus        32 ~~h~~~V~~~~~s~~~~~l~sg~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  108 (408)
                      ..+...+.+.+|||||+.||......   .+.+.+..++..                        ..+..+.        
T Consensus        35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~--------   82 (269)
T d2hqsa1          35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------------------------RQVASFP--------   82 (269)
T ss_dssp             EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------------------------EEEECCS--------
T ss_pred             ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce------------------------eEEeeee--------
Confidence            45677788999999999998765432   354555444431                        2233333        


Q ss_pred             cccccceeEEEEeecCCCcEEEEEe-CCCeEEEE--EcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363          109 LEIEEKINKIRWCQSANSALYLLST-NDKTIKLW--KVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC  185 (408)
Q Consensus       109 ~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  185 (408)
                          .......|+|+  |+.++... .++...++  ................         ..       ...+++++..
T Consensus        83 ----~~~~~~~~spd--g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-------~~~~~~~~~~  140 (269)
T d2hqsa1          83 ----RHNGAPAFSPD--GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN---------NT-------EPTWFPDSQN  140 (269)
T ss_dssp             ----SCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSC---------EE-------EEEECTTSSE
T ss_pred             ----cccccceecCC--CCeeeEeeecCCccceeecccccccceeeeecccc---------cc-------cccccccccc
Confidence                55778889655  77777655 33333333  2222222222211111         00       2345555544


Q ss_pred             eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCC
Q 015363          186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI  263 (408)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~  263 (408)
                      +           +++...++...+|. ... ..    ..... ............|+|+++.++..  ..+...+|....
T Consensus       141 ~-----------~~~~~~~g~~~i~~-~~~-~~----~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~  202 (269)
T d2hqsa1         141 L-----------AFTSDQAGRPQVYK-VNI-NG----GAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  202 (269)
T ss_dssp             E-----------EEEECTTSSCEEEE-EET-TS----SCCEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             c-----------eecccccCCceEee-eec-cc----cccee-eecccccccccccccccceeEEEeecCCceeeeEeec
Confidence            3           23333344333333 111 11    11111 13344566778999999988875  455555554442


Q ss_pred             CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC---CCeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      .....+.        ..+........|+||| +.|+..+.   ...|.++++..+..     ..+...            
T Consensus       203 ~~~~~~~--------~~~~~~~~~p~~SPDG-~~i~f~s~~~~~~~l~~~~~dg~~~-----~~lt~~------------  256 (269)
T d2hqsa1         203 ATGGVQV--------LSSTFLDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTDGRFK-----ARLPAT------------  256 (269)
T ss_dssp             TTCCEEE--------CCCSSSCEEEEECTTS-SEEEEEEEETTEEEEEEEETTSCCE-----EECCCS------------
T ss_pred             ccccceE--------eecCccccceEECCCC-CEEEEEEcCCCCcEEEEEECCCCCE-----EEEeCC------------
Confidence            2323332        2234456788999999 76665543   34788999987653     222222            


Q ss_pred             cceeEEEEEcc
Q 015363          341 IASISDIKFAR  351 (408)
Q Consensus       341 ~~~i~~~~~sp  351 (408)
                      .+.+...+|||
T Consensus       257 ~g~~~~p~WSP  267 (269)
T d2hqsa1         257 DGQVKFPAWSP  267 (269)
T ss_dssp             SSEEEEEEECC
T ss_pred             CCcEEeEEeCC
Confidence            25678889998

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=4.2e-07  Score=74.40  Aligned_cols=205  Identities=12%  Similarity=0.113  Sum_probs=110.3

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCC---eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN  189 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  189 (408)
                      ..+...+|||+  |+.||......   .+.+.+...+..........         ...       ...|+|+|+.+.  
T Consensus        39 ~~~~sP~wSPD--Gk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-------~~~~spdg~~i~--   98 (269)
T d2hqsa1          39 QPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---------HNG-------APAFSPDGSKLA--   98 (269)
T ss_dssp             SCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS---------CEE-------EEEECTTSSEEE--
T ss_pred             CceeeeEECCC--CCEEEEEEeeccCcceeeeecccCceeEEeeeec---------ccc-------cceecCCCCeee--
Confidence            45788999755  99998875333   46666777766555443322         122       578999998872  


Q ss_pred             cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE-e-cCC--eEEEEeCCCCC
Q 015363          190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDL--RINLWNLEISN  265 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~--~i~iwd~~~~~  265 (408)
                               +.....+...++. ........     .. ............+++++..+.. . .++  .|.+.++....
T Consensus        99 ---------~~~~~~~~~~~~~-~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~  162 (269)
T d2hqsa1          99 ---------FALSKTGSLNLYV-MDLASGQI-----RQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  162 (269)
T ss_dssp             ---------EEECTTSSCEEEE-EETTTCCE-----EE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             ---------EeeecCCccceee-cccccccc-----ee-eeeccccccccccccccccceecccccCCceEeeeeccccc
Confidence                     2222222222222 11111100     00 1222233345567777765554 3 455  45555555332


Q ss_pred             ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CCeEEEE--EcCCCceecccccccccccCCCCccccccccc
Q 015363          266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLI--DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA  342 (408)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  342 (408)
                      .. .        +...........|+|++ ..++..+. .+...+|  +...+..     .....             ..
T Consensus       163 ~~-~--------~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~-------------~~  214 (269)
T d2hqsa1         163 PQ-R--------ITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----QVLSS-------------TF  214 (269)
T ss_dssp             CE-E--------CCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCE-----EECCC-------------SS
T ss_pred             ce-e--------eeccccccccccccccc-ceeEEEeecCCceeeeEeecccccc-----eEeec-------------Cc
Confidence            22 1        33345667788999999 66665544 4444444  4444322     11111             13


Q ss_pred             eeEEEEEccCCCEEEEe---CC-CeEEEEECCCCCCceeeeeecc
Q 015363          343 SISDIKFARNGRHILSR---DY-MTLKLWDINMDSGPVATFQVHE  383 (408)
Q Consensus       343 ~i~~~~~spdg~~l~s~---~d-~~v~~wd~~~~~~~~~~~~~~~  383 (408)
                      ......|||||+.|+-.   .. ..|.+++++.  .....+....
T Consensus       215 ~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg--~~~~~lt~~~  257 (269)
T d2hqsa1         215 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATD  257 (269)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS--CCEEECCCSS
T ss_pred             cccceEECCCCCEEEEEEcCCCCcEEEEEECCC--CCEEEEeCCC
Confidence            45678999999998753   22 6788999974  3444444443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.01  E-value=1.5e-07  Score=76.83  Aligned_cols=240  Identities=10%  Similarity=0.051  Sum_probs=133.3

Q ss_pred             eeccceEEEEECCCCCeEEEe-ecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATG-DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      .+.-.-..|+++++|++.++. +..+.+..++..+...                      ....+.+.            
T Consensus        11 ~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~------------   56 (260)
T d1rwia_          11 DFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT----------------------TVLPFNGL------------   56 (260)
T ss_dssp             CSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CE----------------------EECCCCSC------------
T ss_pred             CCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE----------------------EEeccCCc------------
Confidence            344455799999999966554 4557777766543321                      01111111            


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       .....+++.  ++|.++++....+.+++++..+..........                ..+..+++.+++...     
T Consensus        57 -~~p~gvav~--~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~----------------~~p~~iavd~~g~i~-----  112 (260)
T d1rwia_          57 -YQPQGLAVD--GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGL----------------NYPEGLAVDTQGAVY-----  112 (260)
T ss_dssp             -CSCCCEEEC--TTCCEEEEETTTEEEEECTTCSCCEECCCCSC----------------CSEEEEEECTTCCEE-----
T ss_pred             -cCceEEEEc--CCCCEEEeeeeeceeeeeeeccceeeeeeeee----------------eecccccccccceeE-----
Confidence             225678884  45777666666666666554444322111110                112256777777654     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  270 (408)
                             ++-.....+..++ ....       ...............++++++++++++. .++.|..+|.+...... .
T Consensus       113 -------v~d~~~~~~~~~~-~~~~-------~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~-~  176 (260)
T d1rwia_         113 -------VADRGNNRVVKLA-AGSK-------TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-L  176 (260)
T ss_dssp             -------EEEGGGTEEEEEC-TTCS-------SCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-C
T ss_pred             -------eeccccccccccc-cccc-------eeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeee-e
Confidence                   2222222333322 1000       0000001112345688999999988877 78899999987433221 1


Q ss_pred             eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                             ..........|+++++| +++++....+.|..++......     ..+....           ......|+++
T Consensus       177 -------~~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~~~~-----~~~~~~~-----------~~~P~~i~~d  232 (260)
T d1rwia_         177 -------PFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS-----TVLPFTG-----------LNTPLAVAVD  232 (260)
T ss_dssp             -------CCSSCCSEEEEEECTTC-CEEEEETTTTEEEEECTTCSCC-----EECCCCS-----------CCCEEEEEEC
T ss_pred             -------eccccCCCccceeeeee-eeeeeecCCCEEEEEeCCCCeE-----EEEccCC-----------CCCeEEEEEe
Confidence                   12234556899999999 8888887788898887654422     1111110           1346789999


Q ss_pred             cCCCEEEEeC-CCeEEEEECC
Q 015363          351 RNGRHILSRD-YMTLKLWDIN  370 (408)
Q Consensus       351 pdg~~l~s~~-d~~v~~wd~~  370 (408)
                      ++|.++++-. +++|+.++..
T Consensus       233 ~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         233 SDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECCC
T ss_pred             CCCCEEEEECCCCEEEEEeCC
Confidence            9998777754 4777766553

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.00  E-value=3.9e-07  Score=76.41  Aligned_cols=265  Identities=8%  Similarity=0.027  Sum_probs=141.1

Q ss_pred             eEEEEECCCCCeEEEeec-------CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363           38 ISAIEFDKSGDHLATGDR-------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE  110 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  110 (408)
                      ...++|.++|+++++...       +|+|..||..++...                        .+......       .
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~------------------------~~~~~~~~-------~   68 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT------------------------VICKPEVN-------G   68 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE------------------------EEECCEET-------T
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEE------------------------EEECCccc-------c
Confidence            456789999997766332       467877887665421                        11100000       0


Q ss_pred             cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363          111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF  190 (408)
Q Consensus       111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  190 (408)
                      .......++|.  +++..++++...+.|...+...+.... ..........          ..+..+.+.++|....+-.
T Consensus        69 ~~g~P~Gl~~~--~dg~~l~vad~~~~i~~~~~~g~~~~~-~~~~~~g~~~----------~~pndl~~d~~G~lyvtd~  135 (314)
T d1pjxa_          69 YGGIPAGCQCD--RDANQLFVADMRLGLLVVQTDGTFEEI-AKKDSEGRRM----------QGCNDCAFDYEGNLWITAP  135 (314)
T ss_dssp             EECCEEEEEEC--SSSSEEEEEETTTEEEEEETTSCEEEC-CSBCTTSCBC----------BCCCEEEECTTSCEEEEEC
T ss_pred             CCCcceeEEEe--CCCCEEEEEECCCeEEEEeCCCcEEEE-Eecccccccc----------CCCcEEEECCCCCEEEecC
Confidence            00235678895  457778888777778888877654322 2111110000          0112456667765431100


Q ss_pred             cccc-C--ccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC----EEEEe--cCCeEEEEeC
Q 015363          191 GCAS-N--DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE----TFISA--DDLRINLWNL  261 (408)
Q Consensus       191 ~~~~-~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~----~l~~~--~d~~i~iwd~  261 (408)
                      .... .  .........+.|..++   . +.    +....  ...-...+.++|+|++.    .|..+  ..+.|..||+
T Consensus       136 ~~~~~~~~~~~~~~~~~G~v~~~~---~-dg----~~~~~--~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~  205 (314)
T d1pjxa_         136 AGEVAPADYTRSMQEKFGSIYCFT---T-DG----QMIQV--DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDI  205 (314)
T ss_dssp             BCBCTTSCCCBTTSSSCEEEEEEC---T-TS----CEEEE--EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEE
T ss_pred             ccCcccccccceeccCCceEEEEe---e-cC----ceeEe--eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeec
Confidence            0000 0  0000011223333322   1 11    11110  11123356789988764    45444  6889999988


Q ss_pred             CCCCceeeEeecCCCcccC-CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363          262 EISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI  340 (408)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  340 (408)
                      ............  ..+.. .......+++..+| +++++....+.|.+||...+...    ..+..+            
T Consensus       206 ~~~g~~~~~~~~--~~~~~~~~~~pdGiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~----~~i~~p------------  266 (314)
T d1pjxa_         206 KGPAKIENKKVW--GHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPK----MRIRCP------------  266 (314)
T ss_dssp             EETTEEEEEEEE--EECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCS----EEEECS------------
T ss_pred             cCccccceeeEE--EEccccccccceeeEEecCC-cEEEEEcCCCEEEEEeCCCCEEE----EEEECC------------
Confidence            744433211000  00111 12335689999999 88888778899999998876432    233332            


Q ss_pred             cceeEEEEEccCCCEE-EEeC-CCeEEEEECCCCCCc
Q 015363          341 IASISDIKFARNGRHI-LSRD-YMTLKLWDINMDSGP  375 (408)
Q Consensus       341 ~~~i~~~~~spdg~~l-~s~~-d~~v~~wd~~~~~~~  375 (408)
                      ...+.+++|.||++.| ++.+ .+.|...++...|+.
T Consensus       267 ~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~~  303 (314)
T d1pjxa_         267 FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKK  303 (314)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBCC
T ss_pred             CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCChh
Confidence            1457899999999755 4444 489999888766543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.91  E-value=1.6e-06  Score=74.27  Aligned_cols=138  Identities=10%  Similarity=0.017  Sum_probs=82.7

Q ss_pred             cceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 015363          234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID  311 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  311 (408)
                      ..+.++.|+|+|++++++  ....|.+|+..........-..   .........+.++|+|+++.+.++...+++|.+|+
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~---~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~  221 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV---DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE---ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce---eecCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence            457899999999988877  4678889887644433222111   01223456789999999944445555689999999


Q ss_pred             cCCCceec-ccccccc--cccCCCCccccccccceeEEEEEccCCCEEEEe--CC-----CeEEEEECCCCCC
Q 015363          312 MRQSALCD-THSKLFE--EQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DY-----MTLKLWDINMDSG  374 (408)
Q Consensus       312 ~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~d-----~~v~~wd~~~~~~  374 (408)
                      +..++... .......  ....+........+......+.++|||++|+++  .+     ..|..|++...+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~  294 (365)
T d1jofa_         222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc
Confidence            97664321 0000000  000000011112223456788999999999876  22     3488888876443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.89  E-value=2.8e-06  Score=71.32  Aligned_cols=239  Identities=10%  Similarity=0.061  Sum_probs=131.0

Q ss_pred             ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccccee
Q 015363           37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  116 (408)
                      .+..++|.++|++.++-...++|..|+.++...                       ...+....            ....
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~-----------------------~~~~~~~~------------~~p~   85 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-----------------------KRPFVSHK------------ANPA   85 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----------------------EEEEECSS------------SSEE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeE-----------------------EEEEeCCC------------CCee
Confidence            356899999999777777888888888665532                       11122222            4477


Q ss_pred             EEEEeecCCCcEEEEEeC----CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          117 KIRWCQSANSALYLLSTN----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      .+++.  ++|.++++...    .+.+...+................             ..+..+.+.++|...      
T Consensus        86 gla~~--~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------~~~nd~~~d~~G~l~------  144 (319)
T d2dg1a1          86 AIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA-------------YCIDDMVFDSKGGFY------  144 (319)
T ss_dssp             EEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC-------------CCEEEEEECTTSCEE------
T ss_pred             EEEEC--CCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcc-------------cCCcceeEEecccee------
Confidence            89995  55877766533    233444455555444333221110             011246677777643      


Q ss_pred             ccCccccCCC------CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCC
Q 015363          193 ASNDSSFPPG------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEIS  264 (408)
Q Consensus       193 ~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~  264 (408)
                            ++..      ..+.+..++   . +    ....... ...-...+.++|+|+++.|..+  ..+.|..|++...
T Consensus       145 ------vtd~~~~~~~~~g~v~~~~---~-d----g~~~~~~-~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~  209 (319)
T d2dg1a1         145 ------FTDFRGYSTNPLGGVYYVS---P-D----FRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD  209 (319)
T ss_dssp             ------EEECCCBTTBCCEEEEEEC---T-T----SCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             ------ecccccccccCcceeEEEe---c-c----cceeEEE-eeccceeeeeeeccccceEEEecccCCceEEEEEcCC
Confidence                  2111      112222222   0 1    1111111 1112345789999999877665  6889999998744


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      .......................|++.++| ++.++....+.|.+||- .++.+    ..+..+..      -.++...+
T Consensus       210 g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~p-~G~~l----~~i~~P~~------~~~~~~~~  277 (319)
T d2dg1a1         210 GVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNK-RGYPI----GQILIPGR------DEGHMLRS  277 (319)
T ss_dssp             SSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECT-TSCEE----EEEECTTG------GGTCSCBC
T ss_pred             CceeccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEEEEECC-CCcEE----EEEeCCCc------CCCcCcee
Confidence            332221110000011112235689999999 88888888999999996 56544    22222110      01223457


Q ss_pred             EEEEEccCCCEEEE
Q 015363          345 SDIKFARNGRHILS  358 (408)
Q Consensus       345 ~~~~~spdg~~l~s  358 (408)
                      .+++|.|++..++.
T Consensus       278 ~~~~~~~~~~~~~~  291 (319)
T d2dg1a1         278 THPQFIPGTNQLII  291 (319)
T ss_dssp             CEEEECTTSCEEEE
T ss_pred             eeEEEeCCCCEEEE
Confidence            89999998766654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.76  E-value=2e-06  Score=72.00  Aligned_cols=208  Identities=8%  Similarity=0.039  Sum_probs=117.6

Q ss_pred             eEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeE
Q 015363           38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK  117 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  117 (408)
                      -..++|.+++.+|+++...+.|...+.++....     .               ......+...           ...++
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~-----~---------------~~~~~~g~~~-----------~~pnd  121 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEE-----I---------------AKKDSEGRRM-----------QGCND  121 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEE-----C---------------CSBCTTSCBC-----------BCCCE
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEE-----E---------------Eecccccccc-----------CCCcE
Confidence            467999999998888877777888887654321     0               0000011100           22577


Q ss_pred             EEEeecCCCcEEEEEeC---------------CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccC
Q 015363          118 IRWCQSANSALYLLSTN---------------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN  182 (408)
Q Consensus       118 v~~~p~~~~~~l~~~~~---------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  182 (408)
                      +++.  ++|.+.++-..               +|.|..++.. ++.......                -..+..++|+++
T Consensus       122 l~~d--~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~----------------~~~pNGi~~~~d  182 (314)
T d1pjxa_         122 CAFD--YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA----------------FQFPNGIAVRHM  182 (314)
T ss_dssp             EEEC--TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE----------------ESSEEEEEEEEC
T ss_pred             EEEC--CCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCC----------------cceeeeeEECCC
Confidence            8884  55776665321               2233333322 222221111                012225677776


Q ss_pred             CC----eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEE
Q 015363          183 GG----CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRIN  257 (408)
Q Consensus       183 ~~----~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~  257 (408)
                      +.    .+           +++-+..+.|..|+ +.........+....+..........+++..+|+++++. ..+.|.
T Consensus       183 ~d~~~~~l-----------yv~d~~~~~i~~~d-~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         183 NDGRPYQL-----------IVAETPTKKLWSYD-IKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             TTSCEEEE-----------EEEETTTTEEEEEE-EEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             CCcceeEE-----------EEEeecccceEEee-ccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence            54    22           24556677788777 432211111111111111222345689999999988887 889999


Q ss_pred             EEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363          258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  315 (408)
                      +||.+. +.....+       ......+++++|.|++..++++.+.+++|...++...
T Consensus       251 ~~dp~~-g~~~~~i-------~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         251 VFGPDG-GQPKMRI-------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EECTTC-BSCSEEE-------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEeCCC-CEEEEEE-------ECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            999873 3333322       2234567899999998447777778899988887643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.71  E-value=8.2e-06  Score=66.17  Aligned_cols=195  Identities=6%  Similarity=-0.002  Sum_probs=115.1

Q ss_pred             ceeEEEEeecCCCcEEEEE-eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363          114 KINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC  192 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~  192 (408)
                      ...+|++  +++|..+++. +..+.+..++..............               ..+..+++.++|...      
T Consensus        15 ~P~~vav--d~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------~~p~gvav~~~g~i~------   71 (260)
T d1rwia_          15 SPSGVAV--DSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL---------------YQPQGLAVDGAGTVY------   71 (260)
T ss_dssp             CEEEEEE--CTTCCEEEEECSSSCEEEEEC----CEEECCCCSC---------------CSCCCEEECTTCCEE------
T ss_pred             CCCEEEE--cCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc---------------cCceEEEEcCCCCEE------
Confidence            3578899  4568766654 455777776665443222211100               112257777888754      


Q ss_pred             ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363          193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  271 (408)
                            ++....+.+++++ -..  .    .  ............+++++++++++++- .+..+..++.......... 
T Consensus        72 ------v~d~~~~~i~~~~-~~~--~----~--~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~-  135 (260)
T d1rwia_          72 ------VTDFNNRVVTLAA-GSN--N----Q--TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-  135 (260)
T ss_dssp             ------EEETTTEEEEECT-TCS--C----C--EECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC-
T ss_pred             ------Eeeeeeceeeeee-ecc--c----e--eeeeeeeeeecccccccccceeEeeccccccccccccccceeeeee-
Confidence                  5555555555543 111  0    0  01111222457899999999988876 6777878777633222110 


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR  351 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  351 (408)
                            ..+ ......++++|++ +++++...++.|..+|.......     .+....           ......|++++
T Consensus       136 ------~~~-~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~~~~~~-----~~~~~~-----------~~~p~gi~~d~  191 (260)
T d1rwia_         136 ------FTG-LNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQV-----VLPFTD-----------ITAPWGIAVDE  191 (260)
T ss_dssp             ------CCS-CCSCCEEEECTTC-CEEEEEGGGTEEEEECTTTCCEE-----ECCCSS-----------CCSEEEEEECT
T ss_pred             ------ecc-cCCcceeeecCCC-CEeeeccccccccccccccceee-----eeeccc-----------cCCCccceeee
Confidence                  111 2334689999999 88888888899999998765432     111110           13468899999


Q ss_pred             CCCEEEEeC-CCeEEEEECCC
Q 015363          352 NGRHILSRD-YMTLKLWDINM  371 (408)
Q Consensus       352 dg~~l~s~~-d~~v~~wd~~~  371 (408)
                      +|+++++.. .+.|..++...
T Consensus       192 ~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         192 AGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             TCCEEEEETTTTEEEEECTTC
T ss_pred             eeeeeeeecCCCEEEEEeCCC
Confidence            999888875 48888887754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.69  E-value=1.7e-05  Score=65.01  Aligned_cols=236  Identities=8%  Similarity=0.110  Sum_probs=137.6

Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      ...|++.  ++|+++++-.....|++||.+ ++.+..+......     .+..    ..+..+++.++....        
T Consensus        25 P~gvavd--~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~-----~~~~----~~p~~~~~~~~~~~~--------   84 (279)
T d1q7fa_          25 PSGVAVN--AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-----DSQL----LYPNRVAVVRNSGDI--------   84 (279)
T ss_dssp             EEEEEEC--TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-----TTCB----SSEEEEEEETTTTEE--------
T ss_pred             ccEEEEc--CCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC-----cccc----ccccccccccccccc--------
Confidence            6788995  557777776778899999976 4444444221111     0000    011123333332221        


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeec
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV  273 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~  273 (408)
                        ++...+.++.|..++ .       .+.....+..........+++.+++.++++. ..+.+.+++.. + .....+. 
T Consensus        85 --~~~~~~~~~~i~~~~-~-------~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g-~~~~~~g-  151 (279)
T d1q7fa_          85 --IVTERSPTHQIQIYN-Q-------YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-G-NVLHKFG-  151 (279)
T ss_dssp             --EEEECGGGCEEEEEC-T-------TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEEEEE-
T ss_pred             --ceeccCCcccccccc-c-------cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-C-ceeeccc-
Confidence              012223334444443 1       1111222222334557789999999988887 77888888876 3 3333321 


Q ss_pred             CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC
Q 015363          274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG  353 (408)
Q Consensus       274 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg  353 (408)
                          ...+......+++.+++ +++++....+.|++||.... ..    ..+...          +.......|++.++|
T Consensus       152 ----~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G~-~~----~~~g~~----------g~~~~P~giavD~~G  211 (279)
T d1q7fa_         152 ----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ-YL----RQIGGE----------GITNYPIGVGINSNG  211 (279)
T ss_dssp             ----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC-EE----EEESCT----------TTSCSEEEEEECTTC
T ss_pred             ----ccccccccceeeeccce-eEEeeeccccceeeeecCCc-ee----eeeccc----------ccccCCcccccccCC
Confidence                23455667899999999 88888888999999997643 22    233211          112456889999999


Q ss_pred             CEEEEeC--CCeEEEEECCCCCCceeeeeecccc--cceEEecCCCeeeeeeceee
Q 015363          354 RHILSRD--YMTLKLWDINMDSGPVATFQVHEHL--RPKVMHSSKNYFMGLDNIHT  405 (408)
Q Consensus       354 ~~l~s~~--d~~v~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~  405 (408)
                      +++++-.  ++.|.+|+.  .|+.+.++......  ...++.-.++.++..|..++
T Consensus       212 ~i~Vad~~~~~~v~~f~~--~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~  265 (279)
T d1q7fa_         212 EILIADNHNNFNLTIFTQ--DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYR  265 (279)
T ss_dssp             CEEEEECSSSCEEEEECT--TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTE
T ss_pred             eEEEEECCCCcEEEEECC--CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCe
Confidence            9887753  367999986  37888777654332  23333334556655555544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.66  E-value=3.4e-06  Score=70.21  Aligned_cols=213  Identities=11%  Similarity=0.095  Sum_probs=128.4

Q ss_pred             ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363          114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA  193 (408)
Q Consensus       114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (408)
                      .+..+++.  +||+++++...+++|..|+.... ........         +.+       ..+++.++|..+       
T Consensus        29 ~~e~iAv~--pdG~l~vt~~~~~~I~~i~p~g~-~~~~~~~~---------~~~-------~gla~~~dG~l~-------   82 (302)
T d2p4oa1          29 FLENLASA--PDGTIFVTNHEVGEIVSITPDGN-QQIHATVE---------GKV-------SGLAFTSNGDLV-------   82 (302)
T ss_dssp             CEEEEEEC--TTSCEEEEETTTTEEEEECTTCC-EEEEEECS---------SEE-------EEEEECTTSCEE-------
T ss_pred             CcCCEEEC--CCCCEEEEeCCCCEEEEEeCCCC-EEEEEcCC---------CCc-------ceEEEcCCCCeE-------
Confidence            37788995  55989888888999988886644 33322221         112       278999999876       


Q ss_pred             cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363          194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD  272 (408)
Q Consensus       194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  272 (408)
                           ++...++.+..++ ........    ............+.+++.++++++++. .++.+..+|............
T Consensus        83 -----v~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~  152 (302)
T d2p4oa1          83 -----ATGWNADSIPVVS-LVKSDGTV----ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH  152 (302)
T ss_dssp             -----EEEECTTSCEEEE-EECTTSCE----EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             -----EEecCCceEEEEE-ecccccce----eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecC
Confidence                 6666667777666 33322111    111112334567899999999988887 788888888874332222111


Q ss_pred             c--CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363          273 V--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA  350 (408)
Q Consensus       273 ~--~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  350 (408)
                      -  ..............+.++.+  .++++.+..+.|..+++....... ....+..             ......++|+
T Consensus       153 ~~~~~~~~~~~~~~~ngi~~~~~--~l~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~-------------~~~pdgia~d  216 (302)
T d2p4oa1         153 PMLARSNSESVFPAANGLKRFGN--FLYVSNTEKMLLLRIPVDSTDKPG-EPEIFVE-------------QTNIDDFAFD  216 (302)
T ss_dssp             GGGSCSSTTCCSCSEEEEEEETT--EEEEEETTTTEEEEEEBCTTSCBC-CCEEEEE-------------SCCCSSEEEB
T ss_pred             CccceeeccCcccccccccccCC--ceeeecCCCCeEEecccccccccc-ccccccC-------------CCCCcceEEC
Confidence            0  11111222334566777643  577777788999999887653321 0011111             1235679999


Q ss_pred             cCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363          351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQ  380 (408)
Q Consensus       351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~  380 (408)
                      ++|++.++.. ++.|..++..  ++......
T Consensus       217 ~dG~l~va~~~~~~V~~i~p~--G~~~~~~~  245 (302)
T d2p4oa1         217 VEGNLYGATHIYNSVVRIAPD--RSTTIIAQ  245 (302)
T ss_dssp             TTCCEEEECBTTCCEEEECTT--CCEEEEEC
T ss_pred             CCCCEEEEEcCCCcEEEECCC--CCEEEEEe
Confidence            9999777764 5888888774  44433333

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.7e-05  Score=68.75  Aligned_cols=190  Identities=9%  Similarity=-0.006  Sum_probs=98.7

Q ss_pred             ceEEEEECCCCCeEEEee---------cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363           37 IISAIEFDKSGDHLATGD---------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK  107 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  107 (408)
                      .+....||||+++++...         ..+.+.|+|+.++...                     .+.......       
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~---------------------~l~~~~~~~-------  113 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ---------------------SLDPPEVSN-------  113 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE---------------------ECCCTTCCS-------
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee---------------------eccCccCCc-------
Confidence            567788999999887763         3578889998877531                     111111111       


Q ss_pred             ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccC-CCCCeEee--cCCceeeEEccCCC
Q 015363          108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA-GNGPIFGS--HVSAIPKSYMANGG  184 (408)
Q Consensus       108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~--~~~~~~~~~~~~~~  184 (408)
                           ..+....|+|+  |+.+|... ++.|.+.+..++...+............ ....++.-  ......++|+|||+
T Consensus       114 -----~~l~~~~wSPD--G~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk  185 (465)
T d1xfda1         114 -----AKLQYAGWGPK--GQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT  185 (465)
T ss_dssp             -----CCCSBCCBCSS--TTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS
T ss_pred             -----cccceeeeccC--CceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCC
Confidence                 34666889765  88888765 6678888887776555443221110000 00000000  01123688999999


Q ss_pred             eeecccccccC--------------------ccccCCCCCc--eeeeceeeeccccccccccceeeccccccceEEEEeC
Q 015363          185 CGERNFGCASN--------------------DSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN  242 (408)
Q Consensus       185 ~l~~~~~~~~~--------------------~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  242 (408)
                      .|.........                    .+-..|....  .+.++| +..........+... .......+..+.|+
T Consensus       186 ~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d-~~~~~~~~~~~~~~~-~~~~~~y~~~~~W~  263 (465)
T d1xfda1         186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG-LNGPTHDLEMMPPDD-PRMREYYITMVKWA  263 (465)
T ss_dssp             EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE-SSSSCCCEECCCCCC-GGGSSEEEEEEEES
T ss_pred             eEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEe-cCCCcEEEEEeccCc-CccccceeeeeEEc
Confidence            98765321110                    0011222222  234444 322111111111011 12233457789999


Q ss_pred             CCCCEEEEe-c----CCeEEEEeCCCC
Q 015363          243 SDGETFISA-D----DLRINLWNLEIS  264 (408)
Q Consensus       243 ~~~~~l~~~-~----d~~i~iwd~~~~  264 (408)
                      |++++++.. .    ...|.++|..++
T Consensus       264 ~d~~~~~~~~nR~q~~~~i~~~d~~tg  290 (465)
T d1xfda1         264 TSTKVAVTWLNRAQNVSILTLCDATTG  290 (465)
T ss_dssp             SSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             CCCeEEEEEEccccccceEEEEcCCCC
Confidence            999877664 1    235777888743

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.53  E-value=7.7e-07  Score=73.19  Aligned_cols=97  Identities=9%  Similarity=0.109  Sum_probs=59.4

Q ss_pred             EECCC--CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEE
Q 015363           42 EFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (408)
Q Consensus        42 ~~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~  119 (408)
                      ..+||  |+.+|-.+ +|.|.+.|+.+++.                        ..+..+.            ..+...+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~------------------------~~Lt~~~------------~~~~~p~   47 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST------------------------RKIVSNL------------GVINNAR   47 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE------------------------EEEECSS------------SEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE------------------------EEEecCC------------CcccCEE
Confidence            35688  99887664 56788889887753                        2344444            5578899


Q ss_pred             EeecCCCcEEEEEeC-C-----CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363          120 WCQSANSALYLLSTN-D-----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG  186 (408)
Q Consensus       120 ~~p~~~~~~l~~~~~-d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  186 (408)
                      |+|+  |+.||.... +     ..|.+++..+++..++.......         ...........|+|+|+.+
T Consensus        48 ~SPD--G~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~---------~~~~~~~~~~~~spdg~~l  109 (281)
T d1k32a2          48 FFPD--GRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKS---------TGRRMFTDVAGFDPDGNLI  109 (281)
T ss_dssp             ECTT--SSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEE---------ETTEECSEEEEECTTCCEE
T ss_pred             ECCC--CCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCc---------cCccccccccccCCCCCEE
Confidence            9755  888887642 2     24777777788766543221110         0000111256899999887

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.36  E-value=0.00014  Score=60.67  Aligned_cols=218  Identities=9%  Similarity=0.045  Sum_probs=119.9

Q ss_pred             eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363          115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS  194 (408)
Q Consensus       115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (408)
                      +..++|  +++|+++++-...+.|..|+..+++.........               ..+..+++.++|+.+.+.     
T Consensus        42 lEG~~~--D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~---------------~~p~gla~~~dG~l~va~-----   99 (319)
T d2dg1a1          42 LEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK---------------ANPAAIKIHKDGRLFVCY-----   99 (319)
T ss_dssp             EEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS---------------SSEEEEEECTTSCEEEEE-----
T ss_pred             cEeCEE--CCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC---------------CCeeEEEECCCCCEEEEe-----
Confidence            467889  5668877777788899989888776544332211               112268888998865211     


Q ss_pred             CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c------CCeEEEEeCCCCCce
Q 015363          195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D------DLRINLWNLEISNQS  267 (408)
Q Consensus       195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~------d~~i~iwd~~~~~~~  267 (408)
                           .+.......++. +..... .......  ........+.+++.++|++.++. .      .+.+..++.. .+..
T Consensus       100 -----~~~~~~~~~i~~-~~~~~~-~~~~~~~--~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~  169 (319)
T d2dg1a1         100 -----LGDFKSTGGIFA-ATENGD-NLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTV  169 (319)
T ss_dssp             -----CTTSSSCCEEEE-ECTTSC-SCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCE
T ss_pred             -----cCCCccceeEEE-EcCCCc-eeeeecc--CCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-ccee
Confidence                 111112222222 111100 0000000  01112457789999999988874 2      2335555544 2222


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      ..+        ...-...+.++|+|++..++++-+..++|..|++.................       +.+ ......+
T Consensus       170 ~~~--------~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~-------~~~-~~~PdGl  233 (319)
T d2dg1a1         170 TPI--------IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY-------FTG-HEGPDSC  233 (319)
T ss_dssp             EEE--------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE-------CCS-SSEEEEE
T ss_pred             EEE--------eeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeec-------cCC-ccceeee
Confidence            221        112234578999999933556666789999999865422111001000000       000 1235679


Q ss_pred             EEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeec
Q 015363          348 KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       348 ~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      ++.++|++.++. ..+.|.+||-  .|+.+..+...
T Consensus       234 ~vD~~G~l~Va~~~~g~V~~~~p--~G~~l~~i~~P  267 (319)
T d2dg1a1         234 CIDSDDNLYVAMYGQGRVLVFNK--RGYPIGQILIP  267 (319)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECT--TSCEEEEEECT
T ss_pred             eEcCCCCEEEEEcCCCEEEEECC--CCcEEEEEeCC
Confidence            999999977776 4699999996  37888887654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=3.1e-05  Score=68.29  Aligned_cols=237  Identities=11%  Similarity=0.131  Sum_probs=121.1

Q ss_pred             EEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCcc
Q 015363          118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS  197 (408)
Q Consensus       118 v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (408)
                      ..|.++  +.++ .-..+|.|.+||+.+++....+....-..     -.+       ....++||++.+...... ..  
T Consensus        22 ~~W~~~--~~~~-~~~~~g~i~~~~~~~~~~~~l~~~~~~~~-----~~~-------~~~~~SpD~~~vl~~~~~-~~--   83 (465)
T d1xfda1          22 AKWISD--TEFI-YREQKGTVRLWNVETNTSTVLIEGKKIES-----LRA-------IRYEISPDREYALFSYNV-EP--   83 (465)
T ss_dssp             CCBSSS--SCBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTT-----TTC-------SEEEECTTSSEEEEEESC-CC--
T ss_pred             CEEeCC--CcEE-EEeCCCcEEEEECCCCCEEEEEcCccccc-----ccc-------ceeEECCCCCeEEEEEcc-cc--
Confidence            467543  5443 45678899999999887655444322110     011       146789999876221110 00  


Q ss_pred             ccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEee-cCCC
Q 015363          198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD-VKPA  276 (408)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~~~  276 (408)
                      .+--+..+.+.++| +..........     .......+....|+|||+.+|-..++.|.+.+.... ...++.. -...
T Consensus        84 ~~r~s~~~~~~i~d-~~~~~~~~l~~-----~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~-~~~~lt~~g~~~  156 (465)
T d1xfda1          84 IYQHSYTGYYVLSK-IPHGDPQSLDP-----PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK-QAIRVVSTGKEG  156 (465)
T ss_dssp             CSSSCCCSEEEEEE-SSSCCCEECCC-----TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSS-CCEEEECCCBTT
T ss_pred             eeEeeccccEEEEE-ccCCceeeccC-----ccCCccccceeeeccCCceEEEEecceEEEEecCCC-ceEEEecccCcc
Confidence            12224567788888 44332211111     122234455678999999999887788998888743 3333211 0000


Q ss_pred             -cccCCc---------CCeEEEEEcCCCCceEEEEeC-CCeEEEEEcCCCc-eeccccccc----ccccCCC--------
Q 015363          277 -NMEDLT---------EVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSA-LCDTHSKLF----EEQEAPG--------  332 (408)
Q Consensus       277 -~~~~~~---------~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~-~~~~~~~~~----~~~~~~~--------  332 (408)
                       .+.+..         ..-..+.||||| +.||.... +..|..+.+.... ........+    .+...+.        
T Consensus       157 ~i~nG~~d~vyeee~~~~~~a~~WSPDg-k~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~  235 (465)
T d1xfda1         157 VIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (465)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             eeeccccchhhhhhhccccceEEECCCC-CeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEec
Confidence             000000         112467899999 77777653 3444444332110 000000000    0000000        


Q ss_pred             ----------CccccccccceeEEEEEccCCCEEEEe----CC-CeEEEEECCCCCCceeeeee
Q 015363          333 ----------TRSFFTEIIASISDIKFARNGRHILSR----DY-MTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       333 ----------~~~~~~~h~~~i~~~~~spdg~~l~s~----~d-~~v~~wd~~~~~~~~~~~~~  381 (408)
                                +..........+..+.|+|++++++..    .+ ..|.++|..+ +++...+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~t-g~~~~~~~e  298 (465)
T d1xfda1         236 NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHED  298 (465)
T ss_dssp             SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEE
T ss_pred             CCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCC-CcEEEEEEE
Confidence                      000011112347789999999877764    12 5688889987 565555443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.25  E-value=0.00057  Score=56.01  Aligned_cols=226  Identities=12%  Similarity=0.035  Sum_probs=125.7

Q ss_pred             EEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEE
Q 015363           40 AIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI  118 (408)
Q Consensus        40 ~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v  118 (408)
                      ...|++. +.+..+=-..+.|.-||.+++..                        ..+.- .            ..+.++
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~------------------------~~~~~-~------------~~~~~i   64 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK------------------------TVHAL-P------------FMGSAL   64 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE------------------------EEEEC-S------------SCEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE------------------------EEEEC-C------------CCcEEE
Confidence            4568774 55555544677888898777642                        11111 1            447888


Q ss_pred             EEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363          119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (408)
Q Consensus       119 ~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (408)
                      ++.+  +|.+++ ++.+ .+.++|..+++............    ..       ....+...|+|.........      
T Consensus        65 ~~~~--dg~l~v-a~~~-gl~~~d~~tg~~~~l~~~~~~~~----~~-------~~nd~~vd~~G~iw~~~~~~------  123 (295)
T d2ghsa1          65 AKIS--DSKQLI-ASDD-GLFLRDTATGVLTLHAELESDLP----GN-------RSNDGRMHPSGALWIGTMGR------  123 (295)
T ss_dssp             EEEE--TTEEEE-EETT-EEEEEETTTCCEEEEECSSTTCT----TE-------EEEEEEECTTSCEEEEEEET------
T ss_pred             EEec--CCCEEE-EEeC-ccEEeecccceeeEEeeeecCCC----cc-------cceeeEECCCCCEEEEeccc------
Confidence            8854  465554 4554 58889999988766554322110    00       11145566666643110000      


Q ss_pred             cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCce-----eeEe
Q 015363          199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS-----FNIV  271 (408)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~-----~~~~  271 (408)
                        ....+.-.+|. +...      .....  ...-...+.++|+++++.+..+  ..+.|..|++......     ...+
T Consensus       124 --~~~~~~g~l~~-~~~g------~~~~~--~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~  192 (295)
T d2ghsa1         124 --KAETGAGSIYH-VAKG------KVTKL--FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI  192 (295)
T ss_dssp             --TCCTTCEEEEE-EETT------EEEEE--EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE
T ss_pred             --cccccceeEee-ecCC------cEEEE--eeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEe
Confidence              00111222333 2111      11111  1112345789999999877766  5788999987532211     1111


Q ss_pred             ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc-
Q 015363          272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA-  350 (408)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-  350 (408)
                      .     ..+.......+++..+| ++.++.-..+.|..||- .++.+    ..+..+            ...+++++|- 
T Consensus       193 ~-----~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp-~G~~~----~~i~lP------------~~~~T~~~FGG  249 (295)
T d2ghsa1         193 D-----STGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-DGNHI----ARYEVP------------GKQTTCPAFIG  249 (295)
T ss_dssp             E-----CTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECT-TCCEE----EEEECS------------CSBEEEEEEES
T ss_pred             c-----cCcccccccceEEcCCC-CEEeeeeCCCceEEecC-CCcEe----eEecCC------------CCceEEEEEeC
Confidence            1     23334557889999999 88877777889999996 45443    333333            1358999996 


Q ss_pred             cCCCEEE
Q 015363          351 RNGRHIL  357 (408)
Q Consensus       351 pdg~~l~  357 (408)
                      ||.+.|+
T Consensus       250 ~d~~~Ly  256 (295)
T d2ghsa1         250 PDASRLL  256 (295)
T ss_dssp             TTSCEEE
T ss_pred             CCCCEEE
Confidence            6765554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.16  E-value=0.00069  Score=55.48  Aligned_cols=199  Identities=15%  Similarity=0.156  Sum_probs=117.1

Q ss_pred             eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE  112 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  112 (408)
                      .....+.++++.++|.++++ +.+ .+.++|..+++..                     .+........          .
T Consensus        56 ~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~---------------------~l~~~~~~~~----------~  102 (295)
T d2ghsa1          56 ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLT---------------------LHAELESDLP----------G  102 (295)
T ss_dssp             ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEE---------------------EEECSSTTCT----------T
T ss_pred             ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceee---------------------EEeeeecCCC----------c
Confidence            34567889999999986665 444 5888998776521                     1111111111          1


Q ss_pred             cceeEEEEeecCCCcEEEEEeC----CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363          113 EKINKIRWCQSANSALYLLSTN----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER  188 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  188 (408)
                      ..++++.+  +++|.+.++...    .+.-.+|.+..++........                ..+..+.++++++.+  
T Consensus       103 ~~~nd~~v--d~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----------------~~~Ng~~~s~d~~~l--  162 (295)
T d2ghsa1         103 NRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----------------SIPNSICFSPDGTTG--  162 (295)
T ss_dssp             EEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----------------SSEEEEEECTTSCEE--
T ss_pred             ccceeeEE--CCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----------------CCcceeeecCCCceE--
Confidence            45788888  566876655432    234456666666554433221                122267889998865  


Q ss_pred             ccccccCccccCCCCCceeeeceeeeccccccccccc-eeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363          189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCR-RIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ  266 (408)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~  266 (408)
                               +++.+..+.|..++ +............ .............+++..+|++.++. ..+.|..||-+ + +
T Consensus       163 ---------~~~dt~~~~I~~~~-~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G-~  230 (295)
T d2ghsa1         163 ---------YFVDTKVNRLMRVP-LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G-N  230 (295)
T ss_dssp             ---------EEEETTTCEEEEEE-BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C-C
T ss_pred             ---------EEeecccceeeEee-ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-C-c
Confidence                     35566677788777 4322221111111 11112334567889999999988887 78999999976 4 4


Q ss_pred             eeeEeecCCCcccCCcCCeEEEEEc-CCCCceEEEEeC
Q 015363          267 SFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSS  303 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~  303 (408)
                      .+..+.+     +  ...+++++|- |+...++++...
T Consensus       231 ~~~~i~l-----P--~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         231 HIARYEV-----P--GKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEEEEC-----S--CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EeeEecC-----C--CCceEEEEEeCCCCCEEEEEECC
Confidence            4444432     2  2458999996 676456666543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.84  E-value=0.0031  Score=50.63  Aligned_cols=71  Identities=14%  Similarity=0.105  Sum_probs=40.5

Q ss_pred             eEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363          236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR  313 (408)
Q Consensus       236 v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  313 (408)
                      .....++++...+...  ....|.++|++.. ....        +..+.. .....|+|+| +.|+.. .++.|+++|+.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~--------lt~~~~-~~~~~~SpDG-~~I~f~-~~~~l~~~d~~  261 (281)
T d1k32a2         194 VSSPVIVGHRIYFITDIDGFGQIYSTDLDGK-DLRK--------HTSFTD-YYPRHLNTDG-RRILFS-KGGSIYIFNPD  261 (281)
T ss_dssp             CEEEEEETTEEEEEECTTSSCEEEEEETTSC-SCEE--------CCCCCS-SCEEEEEESS-SCEEEE-ETTEEEEECTT
T ss_pred             cceeeeeccccceecccccccceEEEeCCCC-ceEE--------eecCCC-cccccCcCCC-CEEEEE-eCCEEEEEECC
Confidence            3444555553333332  3456777788733 3322        122221 1234689999 666653 47889999999


Q ss_pred             CCcee
Q 015363          314 QSALC  318 (408)
Q Consensus       314 ~~~~~  318 (408)
                      +++..
T Consensus       262 ~g~~~  266 (281)
T d1k32a2         262 TEKIE  266 (281)
T ss_dssp             TCCEE
T ss_pred             CCCEE
Confidence            88653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.54  E-value=0.004  Score=52.35  Aligned_cols=78  Identities=9%  Similarity=0.034  Sum_probs=50.6

Q ss_pred             eEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceee-EeecCC--CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEE
Q 015363          236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFN-IVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI  310 (408)
Q Consensus       236 v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~-~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  310 (408)
                      ...+.++|||++++++  -+.++.++|++.-...+. ..+.+.  .......-....-+|+..| ....+---|.+|.-|
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw  355 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKW  355 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEE
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEEE
Confidence            4578999999999886  699999999973222110 000000  0011223345678999888 666666679999999


Q ss_pred             EcCC
Q 015363          311 DMRQ  314 (408)
Q Consensus       311 d~~~  314 (408)
                      ++..
T Consensus       356 ~~~~  359 (459)
T d1fwxa2         356 NIED  359 (459)
T ss_dssp             EHHH
T ss_pred             ecch
Confidence            9863

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.75  E-value=0.12  Score=43.19  Aligned_cols=79  Identities=11%  Similarity=0.160  Sum_probs=49.2

Q ss_pred             eEEEEECCCCCeEEEeecC-CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccccee
Q 015363           38 ISAIEFDKSGDHLATGDRG-GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN  116 (408)
Q Consensus        38 V~~~~~s~~~~~l~sg~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  116 (408)
                      ..+.++.++|++++.|+.+ ..+.+||..+....                     ....+....            . -.
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~---------------------~~~~~~~~r------------~-~~  123 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI---------------------PGPDMQVAR------------G-YQ  123 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE---------------------ECCCCSSCC------------S-SC
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCccc---------------------ccccccccc------------c-cc
Confidence            3466788999999998755 58999998776531                     001111100            1 12


Q ss_pred             EEEEeecCCCcEEEEEeCC------CeEEEEEcCCCcEEEEe
Q 015363          117 KIRWCQSANSALYLLSTND------KTIKLWKVQEKKVKKVF  152 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~  152 (408)
                      ..+..  .||++++.++.+      ..+.+||..+.+....-
T Consensus       124 ~~~~~--~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3         124 SSATM--SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             EEEEC--TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred             ceeee--cCCceeeeccccccccccceeeeecCCCCceeecC
Confidence            23332  568888887643      36899999998776543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.43  E-value=0.12  Score=42.49  Aligned_cols=62  Identities=13%  Similarity=0.161  Sum_probs=39.2

Q ss_pred             cceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEE
Q 015363          234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS  301 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  301 (408)
                      ...+.|+++|++++|+.+  ..++|+.|++...+.. .....     ..-....-.+.+.+.+..+.+++
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l-~~~~~-----~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL-TPLRV-----LSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE-EEEEE-----EECSSEEEEEEECTTTCCEEEEE
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCccc-ceEEE-----ecCCCCCCccEEecCCCEEEEEE
Confidence            557899999999988877  6899999999844332 22111     11234456788876431444443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.2  Score=39.42  Aligned_cols=205  Identities=9%  Similarity=0.082  Sum_probs=111.2

Q ss_pred             cceeEEEEeecCCCcEEEEE-eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          113 EKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                      ..+..++|.+.  .+.+..+ ..++.|+..++..+....+......               .+..+++..-+..+     
T Consensus        36 ~~~~~ld~D~~--~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~---------------~p~~iAvD~~~~~l-----   93 (263)
T d1npea_          36 KVIIGLAFDCV--DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG---------------SPEGIALDHLGRTI-----   93 (263)
T ss_dssp             EEEEEEEEETT--TTEEEEEETTTTEEEEEESSSCCCEEEECTTCC---------------CEEEEEEETTTTEE-----
T ss_pred             CcEEEEEEEeC--CCEEEEEECCCCeEEEEEcccCCcEEEEEeccc---------------cccEEEEeccCCeE-----
Confidence            34777888543  4455544 4677888888876655444432211               11145555544444     


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--c--CCeEEEEeCCCCCce
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--DLRINLWNLEISNQS  267 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~  267 (408)
                            .++-...+.|.+.+ +....       .+.+.......+..++++|...++...  .  ...|.--++. +...
T Consensus        94 ------Y~~d~~~~~I~~~~-~dg~~-------~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d-G~~~  158 (263)
T d1npea_          94 ------FWTDSQLDRIEVAK-MDGTQ-------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNR  158 (263)
T ss_dssp             ------EEEETTTTEEEEEE-TTSCS-------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCC
T ss_pred             ------EEeccCCCEEEEEe-cCCce-------EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC-CCCc
Confidence                  13334455666655 22211       111222233567899999988777754  2  2234444555 2222


Q ss_pred             eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363          268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  347 (408)
                      ..+.       ...-.....+++++.+.+++.+-...+.|...++......    ..+.+.             ....+|
T Consensus       159 ~~i~-------~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~----~v~~~~-------------~~P~~l  214 (263)
T d1npea_         159 RILA-------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR----KVLEGL-------------QYPFAV  214 (263)
T ss_dssp             EEEE-------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE----EEEECC-------------CSEEEE
T ss_pred             eeee-------eecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE----EEECCC-------------CCcEEE
Confidence            2221       1223456799999887344455456789999998765331    122221             123467


Q ss_pred             EEccCCCEEEEe--CCCeEEEEECCCCCCceeeeee
Q 015363          348 KFARNGRHILSR--DYMTLKLWDINMDSGPVATFQV  381 (408)
Q Consensus       348 ~~spdg~~l~s~--~d~~v~~wd~~~~~~~~~~~~~  381 (408)
                      ++.  +.+|+-.  ..+.|...|..+ ++.+..+..
T Consensus       215 av~--~~~lYwtd~~~~~I~~~~~~~-g~~~~~~~~  247 (263)
T d1npea_         215 TSY--GKNLYYTDWKTNSVIAMDLAI-SKEMDTFHP  247 (263)
T ss_dssp             EEE--TTEEEEEETTTTEEEEEETTT-TEEEEEECC
T ss_pred             EEE--CCEEEEEECCCCEEEEEECCC-CccceEECC
Confidence            765  4455544  348888888876 566665543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.69  E-value=0.45  Score=39.41  Aligned_cols=34  Identities=18%  Similarity=0.120  Sum_probs=24.3

Q ss_pred             EEEEeecCCCcEEEEEeCC-CeEEEEEcCCCcEEEEe
Q 015363          117 KIRWCQSANSALYLLSTND-KTIKLWKVQEKKVKKVF  152 (408)
Q Consensus       117 ~v~~~p~~~~~~l~~~~~d-~~i~vwd~~~~~~~~~~  152 (408)
                      ..++.  .+|.+++.|+.+ ..+.+||..+......-
T Consensus        80 ~~~~~--~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~  114 (387)
T d1k3ia3          80 GISMD--GNGQIVVTGGNDAKKTSLYDSSSDSWIPGP  114 (387)
T ss_dssp             EEEEC--TTSCEEEECSSSTTCEEEEEGGGTEEEECC
T ss_pred             EEEEe--cCCcEEEeecCCCcceeEecCccCcccccc
Confidence            34553  568888887654 68999999998776543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.58  Score=36.61  Aligned_cols=114  Identities=7%  Similarity=-0.022  Sum_probs=71.6

Q ss_pred             cceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe-CCCeEEEE
Q 015363          234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLI  310 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iw  310 (408)
                      ..+..+++.+.+..|..+  ..++|.+.++. +......       ..........++++|....++.+-. ..+.|...
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~-g~~~~~~-------~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~  148 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  148 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE-------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecC-CceEEEE-------EcCCCCCcceEEEEcccCeEEEeccCCCcceeEe
Confidence            456678888777666665  67899999998 3333222       2223455789999986524444432 34567777


Q ss_pred             EcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-C-CCeEEEEECCC
Q 015363          311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDINM  371 (408)
Q Consensus       311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~-d~~v~~wd~~~  371 (408)
                      ++.....     ..+....           ......+++.+.+..|+-+ . .+.|...+++.
T Consensus       149 ~~dGs~~-----~~l~~~~-----------~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         149 GLNGVDI-----YSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             ETTSCCE-----EEEECSS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ccCCCce-----ecccccc-----------cceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence            7754432     2221111           1356889999988877776 3 48898889864

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.85  E-value=0.68  Score=36.56  Aligned_cols=210  Identities=15%  Similarity=0.198  Sum_probs=116.8

Q ss_pred             EEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEE
Q 015363           40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR  119 (408)
Q Consensus        40 ~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~  119 (408)
                      +.-.+|..+.||.=+ ..++.|+|+++.+.                          ++.|.          ..++|.--.
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~k--------------------------lks~~----------~~e~VvfWk  109 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSK--------------------------MKAHT----------MTDDVTFWK  109 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEE--------------------------EEEEE----------CSSCCCEEE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhh--------------------------hceEE----------cCCCcEEEE
Confidence            445778888777765 55899999987652                          33332          126688888


Q ss_pred             EeecCCCcEEEEEeCCCeEEEEEcCCC-cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363          120 WCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS  198 (408)
Q Consensus       120 ~~p~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (408)
                      |.  . .+.|+..+ +..|.-|+++.. ...+.+..+..-    .+..+.       ....+++.+.+....-....   
T Consensus       110 Wi--s-~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L----~~~QII-------nY~~d~~~kW~~l~GI~~~~---  171 (327)
T d1utca2         110 WI--S-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL----AGCQII-------NYRTDAKQKWLLLTGISAQQ---  171 (327)
T ss_dssp             ES--S-SSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGG----TTCEEE-------EEEECTTSCEEEEEEEEEET---
T ss_pred             ec--C-CCEEEEEc-CCceEEEcccCCCCchhhhhhcccc----cCceEE-------EEEECCCCCEEEEEeEecCC---
Confidence            84  2 34666655 457999999642 344444443321    122333       34445555554211000000   


Q ss_pred             cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC---CEEEEe----cCCeEEEEeCCCCC---cee
Q 015363          199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG---ETFISA----DDLRINLWNLEISN---QSF  268 (408)
Q Consensus       199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~~~----~d~~i~iwd~~~~~---~~~  268 (408)
                        +.-.|.+.+|. +.+       +..+. +.+|......+.+..+.   .+|+-+    ..+++++.++....   ..+
T Consensus       172 --~~i~G~mQLYS-~er-------~~sQ~-ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f  240 (327)
T d1utca2         172 --NRVVGAMQLYS-VDR-------KVSQP-IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF  240 (327)
T ss_dssp             --TEEEEEEEEEE-TTT-------TEEEE-ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC
T ss_pred             --CceeEEEEEEE-ecc-------CcCcc-ccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC
Confidence              11236667766 221       11222 47887777666554322   234333    34789999987532   111


Q ss_pred             --eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCce
Q 015363          269 --NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL  317 (408)
Q Consensus       269 --~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  317 (408)
                        +..++.-. -..-.+-.-++..++.. .++..-+.-|.|.+||+.++..
T Consensus       241 ~kk~vdi~fp-pea~~DFPvamqvs~ky-giiyviTK~G~i~lyDleTgt~  289 (327)
T d1utca2         241 PKKAVDVFFP-PEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTC  289 (327)
T ss_dssp             CCEEEECCCC-TTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCE
T ss_pred             cceeEEEECC-ccccCCcEEEEEeeccC-CEEEEEecCcEEEEEEcccccE
Confidence              11221100 11123445688888887 7888888999999999999864

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.72  E-value=0.86  Score=37.16  Aligned_cols=112  Identities=12%  Similarity=0.126  Sum_probs=65.9

Q ss_pred             ccCCCCCceeeeceeeec-cccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc-eeeEe-ec
Q 015363          198 SFPPGGVSSLRLPVVVTS-QETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-SFNIV-DV  273 (408)
Q Consensus       198 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~-~~  273 (408)
                      ++....++.+..|. +.. .+.......++.+  .-...+..+.+++....|..+ .+..|..++.+.... ...++ ..
T Consensus       146 afv~~k~G~v~q~~-l~~~~~g~v~~~lvr~f--~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~  222 (353)
T d1h6la_         146 AMVTGKEGEFEQYE-LNADKNGYISGKKVRAF--KMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRA  222 (353)
T ss_dssp             EEEECSSSEEEEEE-EEECTTSSEEEEEEEEE--ECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEEC
T ss_pred             EEEEcCCceEEEEE-EEcCCCCceeeEeeecc--CCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecc
Confidence            37777889999888 433 3333334444444  223568888999998888888 777776666652211 11111 11


Q ss_pred             CCCcccCCcCCeEEEEEc--CCCC-ceEEEEeCCCeEEEEEcCCC
Q 015363          274 KPANMEDLTEVITSAEFH--PTHC-NMLAYSSSKGSIRLIDMRQS  315 (408)
Q Consensus       274 ~~~~~~~~~~~v~~~~~~--p~~~-~~l~s~~~dg~i~iwd~~~~  315 (408)
                      ..   ......+-.|+.-  +++. .++++.-.+++..+||..+.
T Consensus       223 ~g---~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         223 DG---RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             SS---SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             cC---ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            11   1123455666543  2222 55566556899999998764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.66  E-value=0.48  Score=40.45  Aligned_cols=59  Identities=17%  Similarity=0.170  Sum_probs=40.5

Q ss_pred             cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCC-cccCCcCCeEEEEEcCC
Q 015363          234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-NMEDLTEVITSAEFHPT  293 (408)
Q Consensus       234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~  293 (408)
                      ...++|+|.|++++|++- ..|.|++++... +....+..+... ....-......|+++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~-g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCC-CcEeecccCCccccccCCCCceeeEEeCCC
Confidence            467799999999999998 689999998773 333333332211 11222456889999996

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.31  E-value=0.54  Score=39.85  Aligned_cols=102  Identities=12%  Similarity=0.147  Sum_probs=60.9

Q ss_pred             ceEEEEeCCCCCEEEEe-c-----CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC----
Q 015363          235 HINSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----  304 (408)
Q Consensus       235 ~v~~i~~~~~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----  304 (408)
                      .+..++++|++++++.+ +     ...|+++|+.++...-..       +..  .....+.|.+++ ..|+....+    
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-------i~~--~~~~~~~W~~D~-~~~~Y~~~~~~~~  195 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-------LER--VKFSCMAWTHDG-KGMFYNAYPQQDG  195 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-------EEE--ECSCCEEECTTS-SEEEEEECCCCSS
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-------ccc--ccccceEEcCCC-CEEEEEEeccccC
Confidence            34566889999999865 2     347899999954432221       111  112468999999 655544322    


Q ss_pred             ------------CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363          305 ------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  358 (408)
Q Consensus       305 ------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s  358 (408)
                                  ..|.++.+.+....+.  ..+.....          ...+..+..++++++|+.
T Consensus       196 ~~~~~~~~~~~~~~v~~h~lgt~~~~d~--~v~~e~d~----------~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         196 KSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEFPDE----------PKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECCTTC----------TTCEEEEEECTTSCEEEE
T ss_pred             cccccccccCCcceEEEEECCCCccccc--cccccccC----------CceEEeeeccCCcceeeE
Confidence                        2577777776543211  12222211          135677888999998874

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.16  E-value=0.25  Score=41.32  Aligned_cols=93  Identities=10%  Similarity=0.094  Sum_probs=57.2

Q ss_pred             CCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCC-ceEEEEeCC---------------
Q 015363          243 SDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSK---------------  304 (408)
Q Consensus       243 ~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~d---------------  304 (408)
                      +||++++..  .+.+|.+.|++. .+..+++.+     + ....+..++..+++. .+++.++.+               
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~-fkt~kIi~i-----P-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~  169 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDV-MKCDAILEI-----P-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA  169 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTT-TEEEEEEEC-----S-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred             cceeEEEEEcCCCceEEEEECcc-eeeeEEEec-----C-CCCCCceeecccCCCeEEEEccCccccccCCCCccccchh
Confidence            478999887  799999999994 445555433     1 233456666654331 455555542               


Q ss_pred             ---CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363          305 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR  359 (408)
Q Consensus       305 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~  359 (408)
                         +.+..+|..+.+...    .....             +....+.++|||+++++.
T Consensus       170 ~y~~~~t~ID~~tm~V~~----QV~V~-------------g~ld~~~~s~dGK~af~T  210 (459)
T d1fwxa2         170 NYVNVFTAVDADKWEVAW----QVLVS-------------GNLDNCDADYEGKWAFST  210 (459)
T ss_dssp             -EEEEEEEEETTTTEEEE----EEEES-------------SCCCCEEECSSSSEEEEE
T ss_pred             hcceEEEEEecCCceEEE----EeeeC-------------CChhccccCCCCCEEEEE
Confidence               235677887765431    11111             235578999999998875

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.93  E-value=1.7  Score=34.29  Aligned_cols=228  Identities=9%  Similarity=0.145  Sum_probs=128.6

Q ss_pred             CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363          126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS  205 (408)
Q Consensus       126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (408)
                      ...+|.-+ ..++.++|+++.+..+....+..-        ++        -.|..+...              .--.+.
T Consensus        74 ~~IiALra-g~~LQiFnletK~klks~~~~e~V--------vf--------WkWis~~~L--------------~lVT~t  122 (327)
T d1utca2          74 SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDV--------TF--------WKWISLNTV--------------ALVTDN  122 (327)
T ss_dssp             SSEEEEEE-TTEEEEEETTTTEEEEEEECSSCC--------CE--------EEESSSSEE--------------EEECSS
T ss_pred             CcEEEEec-CCeEEEEehhHhhhhceEEcCCCc--------EE--------EEecCCCEE--------------EEEcCC
Confidence            44565544 568999999999988887776532        11        123332221              112345


Q ss_pred             eeeeceeeeccccccccccceeecccc----ccceEEEEeCCCCCEEEE-e---c----CCeEEEEeCCCCCceeeEeec
Q 015363          206 SLRLPVVVTSQETNLVAGCRRIYAHAH----DYHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDV  273 (408)
Q Consensus       206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~  273 (408)
                      .|..|+ +.+.     ..+.+.+ ..|    ...|-.-..+++.++++. |   .    .|.+.+|..+ .+ ..+.   
T Consensus       123 aVYHW~-~~g~-----s~P~k~f-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-r~-~sQ~---  190 (327)
T d1utca2         123 AVYHWS-MEGE-----SQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RK-VSQP---  190 (327)
T ss_dssp             EEEEEE-SSSS-----CCCEEEE-ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TT-EEEE---
T ss_pred             ceEEEc-ccCC-----CCchhhh-hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec-cC-cCcc---
Confidence            677788 4321     1233332 222    356778888999998874 3   2    3677899988 22 2232   


Q ss_pred             CCCcccCCcCCeEEEEEc--CCCCceEEEEeC---CCeEEEEEcCCCceecccc--cccccccCCCCccccccccceeEE
Q 015363          274 KPANMEDLTEVITSAEFH--PTHCNMLAYSSS---KGSIRLIDMRQSALCDTHS--KLFEEQEAPGTRSFFTEIIASISD  346 (408)
Q Consensus       274 ~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~i~~  346 (408)
                          +++|......+.+.  +....+|+.+..   .+++.|-++.....-..+.  +...-.-++      ..-.+-..+
T Consensus       191 ----ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fpp------ea~~DFPva  260 (327)
T d1utca2         191 ----IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------EAQNDFPVA  260 (327)
T ss_dssp             ----ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCT------TCTTCCEEE
T ss_pred             ----ccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCc------cccCCcEEE
Confidence                57776555444443  111134444432   3688888887642110110  000000000      011244567


Q ss_pred             EEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEE-ecCCCeeeeeeceeeec
Q 015363          347 IKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVM-HSSKNYFMGLDNIHTLY  407 (408)
Q Consensus       347 ~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~  407 (408)
                      +..|+.-..++.- ..|.|.+||+.+ +.++..-+--.+.....+ ....+.++++.|.+.++
T Consensus       261 mqvs~kygiiyviTK~G~i~lyDleT-gt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         261 MQISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEETTTTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEeeccCCEEEEEecCcEEEEEEccc-ccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            8888866666655 469999999998 788877776666555333 23335688888877654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=2.3  Score=33.04  Aligned_cols=209  Identities=8%  Similarity=-0.001  Sum_probs=108.2

Q ss_pred             cceeEEEEeecCCCcEEEEE-eCCCeEEEEEcCCCcE----EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363          113 EKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKV----KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE  187 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~-~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  187 (408)
                      ..+..+.|.+.  .+.+.-+ ..++.|.-.++.....    ..+.....               ..+..+++.+.+..+ 
T Consensus        30 ~~~~~id~d~~--~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~---------------~~p~glAvD~~~~~l-   91 (266)
T d1ijqa1          30 RNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---------------QAPDGLAVDWIHSNI-   91 (266)
T ss_dssp             SSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSC---------------SCCCEEEEETTTTEE-
T ss_pred             CceEEEEEEeC--CCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCC---------------CCcceEEEeeccceE-
Confidence            34678888543  4455554 3566666666543211    11111110               111145665555544 


Q ss_pred             cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe---cCCeEEEEeCCCC
Q 015363          188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEIS  264 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~d~~i~iwd~~~~  264 (408)
                                .++-...+.|.+.+ +....       ..............++++|...+|...   ..+.|.-.++. +
T Consensus        92 ----------Y~~d~~~~~I~v~~-~~g~~-------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d-G  152 (266)
T d1ijqa1          92 ----------YWTDSVLGTVSVAD-TKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-G  152 (266)
T ss_dssp             ----------EEEETTTTEEEEEE-TTSSS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-S
T ss_pred             ----------EEEecCCCEEEeEe-cCCce-------EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC-C
Confidence                      23334556677655 32211       112123334567889999876666544   35567777776 3


Q ss_pred             CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363          265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI  344 (408)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  344 (408)
                      .....++       ...-.....+++++.+.+++.+-...+.|...++......    ........          ....
T Consensus       153 s~~~~l~-------~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~----~~~~~~~~----------~~~p  211 (266)
T d1ijqa1         153 VDIYSLV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK----TILEDEKR----------LAHP  211 (266)
T ss_dssp             CCEEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----EEEECTTT----------TSSE
T ss_pred             Cceeccc-------ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE----EEEeCCCc----------cccc
Confidence            3333321       2223456889999987345555566789999998754321    11111100          1234


Q ss_pred             EEEEEccCCCEEEEe--CCCeEEEEECCCCCCceeeeeec
Q 015363          345 SDIKFARNGRHILSR--DYMTLKLWDINMDSGPVATFQVH  382 (408)
Q Consensus       345 ~~~~~spdg~~l~s~--~d~~v~~wd~~~~~~~~~~~~~~  382 (408)
                      .++++.  +.+|.-+  ..+.|.-.+..+ +.....+...
T Consensus       212 ~~lav~--~~~ly~td~~~~~I~~~~~~~-g~~~~~~~~~  248 (266)
T d1ijqa1         212 FSLAVF--EDKVFWTDIINEAIFSANRLT-GSDVNLLAEN  248 (266)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEEEETTT-CCCCEEEECS
T ss_pred             EEEEEE--CCEEEEEECCCCeEEEEECCC-CcceEEEEcC
Confidence            567766  3445544  348888888776 5655555543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.42  E-value=2.4  Score=32.81  Aligned_cols=207  Identities=12%  Similarity=0.035  Sum_probs=113.9

Q ss_pred             eeccceEEEEECCCCCeEEEee-cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363           33 QEVDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI  111 (408)
Q Consensus        33 ~h~~~V~~~~~s~~~~~l~sg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  111 (408)
                      .+...+.+|+|.+..+.|.-.. .++.|+..++++....                       ..+....           
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~-----------------------~v~~~~~-----------   78 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-----------------------TIIRQDL-----------   78 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-----------------------EEECTTC-----------
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE-----------------------EEEEecc-----------
Confidence            3445678899998877666554 5567887787655321                       1111111           


Q ss_pred             ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363          112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG  191 (408)
Q Consensus       112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  191 (408)
                       ..+.++++... .+.+..+-...+.|.+.++.......+......               .+..++..|....+.    
T Consensus        79 -~~p~~iAvD~~-~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~---------------~p~~l~vdp~~g~ly----  137 (263)
T d1npea_          79 -GSPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV---------------NPRGIVTDPVRGNLY----  137 (263)
T ss_dssp             -CCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCS---------------SEEEEEEETTTTEEE----
T ss_pred             -ccccEEEEecc-CCeEEEeccCCCEEEEEecCCceEEEEeccccc---------------CCcEEEEecccCcEE----
Confidence             33677777322 333444555677999999887654443332211               122567777766651    


Q ss_pred             cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceee
Q 015363          192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN  269 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~  269 (408)
                             .+-...+..+++. .. .+.    .....+....-.....+++++.++.|..+  ..+.|...|++ +.....
T Consensus       138 -------~t~~~~~~~~I~r-~~-~dG----~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~-g~~~~~  203 (263)
T d1npea_         138 -------WTDWNRDNPKIET-SH-MDG----TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA-QPGRRK  203 (263)
T ss_dssp             -------EEECCSSSCEEEE-EE-TTS----CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-EEEEEE
T ss_pred             -------EeecCCCCcEEEE-ec-CCC----CCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECC-CCCeEE
Confidence                   1211111222332 11 111    11111112223456789999888777665  57889999987 333322


Q ss_pred             EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      ++       .+.. ...+|++. .+ .++.+-...+.|...|..+++..
T Consensus       204 v~-------~~~~-~P~~lav~-~~-~lYwtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         204 VL-------EGLQ-YPFAVTSY-GK-NLYYTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             EE-------ECCC-SEEEEEEE-TT-EEEEEETTTTEEEEEETTTTEEE
T ss_pred             EE-------CCCC-CcEEEEEE-CC-EEEEEECCCCEEEEEECCCCccc
Confidence            22       2212 23577776 34 56666556788999999887643

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.91  E-value=2.4  Score=34.35  Aligned_cols=111  Identities=13%  Similarity=0.132  Sum_probs=61.1

Q ss_pred             EEEEeCCCCCEEEEe-c------------CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEE--cCCCCceEEEE
Q 015363          237 NSISNNSDGETFISA-D------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAYS  301 (408)
Q Consensus       237 ~~i~~~~~~~~l~~~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~s~  301 (408)
                      -.|+..|+|..++++ .            .|.|.++|+.........+.+.........-....+..  .+++..+|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            356777887666554 1            38899999985554443332221111111112234443  45663355554


Q ss_pred             e---CCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363          302 S---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  358 (408)
Q Consensus       302 ~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s  358 (408)
                      .   ...+|.+|++.........+.++....           ....+++++..+|.+++|
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~-----------~~~pNDv~~~~~g~fy~T  166 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-----------LPSVNDIVAVGPEHFYAT  166 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTT-----------CSSEEEEEEEETTEEEEE
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCcc-----------ccCccceEEecCCCEEEe
Confidence            3   356788888865432222223333332           245788999999988888

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.29  E-value=3.8  Score=33.18  Aligned_cols=73  Identities=3%  Similarity=0.079  Sum_probs=44.9

Q ss_pred             eEEEEE--cCCCCc-eEEEEeCCCeEEEEEcCC---CceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363          285 ITSAEF--HPTHCN-MLAYSSSKGSIRLIDMRQ---SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS  358 (408)
Q Consensus       285 v~~~~~--~p~~~~-~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s  358 (408)
                      +..+++  +|.... ++++...+|.+..|.+..   +....+.++.+...             ..+..|.+.+....|+.
T Consensus       130 vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-------------~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         130 VYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-------------SQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-------------SCEEEEEEETTTTEEEE
T ss_pred             ceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-------------CccceEEEeCCCCcEEE
Confidence            555665  665423 456666789998887643   22222333444433             46888999998888888


Q ss_pred             eC-CCeEEEEECC
Q 015363          359 RD-YMTLKLWDIN  370 (408)
Q Consensus       359 ~~-d~~v~~wd~~  370 (408)
                      +. +..|..++++
T Consensus       197 sEE~~Giw~~~a~  209 (353)
T d1h6la_         197 AEEDEAIWKFSAE  209 (353)
T ss_dssp             EETTTEEEEEESS
T ss_pred             ecCccceEEEEec
Confidence            85 4555555554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=88.00  E-value=1.9  Score=38.01  Aligned_cols=55  Identities=9%  Similarity=0.114  Sum_probs=33.7

Q ss_pred             CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      |.+.-||+.+++...+...-    ... .+.  .++  -.+ .++++|+.|+.++.+|.++|+.+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~----~p~-~gg--~ls--tag-glVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV----SPW-NGG--TLT--TAG-NVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES----SSC-CCC--EEE--ETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeCCCCCceEeeecCC----CCC-CCc--eEE--EcC-CEEEEECCCCeEEEEECCCCcEe
Confidence            46777777755544443110    000 111  122  245 57778999999999999999865

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.88  E-value=7.5  Score=32.35  Aligned_cols=33  Identities=12%  Similarity=0.256  Sum_probs=23.9

Q ss_pred             ceEEEEECCCCCeEEEee-c----CCeEEEEEeCCCCC
Q 015363           37 IISAIEFDKSGDHLATGD-R----GGRVVLFERTDTRD   69 (408)
Q Consensus        37 ~V~~~~~s~~~~~l~sg~-~----dg~i~iw~~~~~~~   69 (408)
                      .+...++||+++++|.+- .    .-.|+++|+.+++.
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~  163 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE  163 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCccee
Confidence            345678899999888542 2    33789999998863

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.28  E-value=8.5  Score=31.43  Aligned_cols=103  Identities=10%  Similarity=0.092  Sum_probs=63.9

Q ss_pred             ceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 015363          235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ  314 (408)
Q Consensus       235 ~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  314 (408)
                      .|..++|+.+  .|+...++.+..++..........        ..-..++..+.++|..   ++....++.+.++++..
T Consensus        88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~--------~~~~~~~~~~~~~p~~---~~l~~~~~~~~~~~l~~  154 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTV--------TSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRT  154 (381)
T ss_dssp             TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEE--------EECSSCEEEEEECSSE---EEEEETTSEEEEEETTT
T ss_pred             CeEEEEeeCC--EEEEEeCCCEEEEEeecccccccc--------ccccccccceecCCce---eEEEecCCCEEEEEecc
Confidence            5778888644  566666677888888754433322        1124557888888764   45556789999999988


Q ss_pred             CceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCC
Q 015363          315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY  361 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d  361 (408)
                      ++..    ....+...      +.- .+.+.+++|++.|+.+++++.
T Consensus       155 ~~~~----~~~~~v~~------~~~-~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         155 KSTK----QLAQNVTS------FDV-TNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             CCEE----EEEESEEE------EEE-CSSEEEEEETTSCEEEEEEET
T ss_pred             Cccc----cccCCcce------EEe-cCCceEEEEeCCcEEEEEeCC
Confidence            7532    11100000      000 145788899988888888743

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.33  E-value=12  Score=32.48  Aligned_cols=56  Identities=9%  Similarity=0.191  Sum_probs=35.0

Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      .|.|.-+|+.+++...+...    ......+.+   .  -.+ .++++|+.|+.++.+|.++++.+
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~----~~~~~~g~l---~--Tag-glVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWE----KFAAWGGTL---Y--TKG-GLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEE----SSCCCSBCE---E--ETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccEEEeccCCCceeeEcCC----CCCCCccee---E--ecC-CEEEEECCCCeEEEEECCCCcEE
Confidence            35788888886665554321    011111221   1  124 46778999999999999999865

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.99  E-value=13  Score=32.43  Aligned_cols=56  Identities=5%  Similarity=0.052  Sum_probs=35.6

Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363          253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC  318 (408)
Q Consensus       253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  318 (408)
                      .|.|.-+|+.+++...+...-    .....+ +    .+-.+ .++++|+.||.++.+|.++|+.+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~----~p~~~g-~----lstag-glVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH----LPLWAG-V----LATAG-NLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES----SCCCSC-C----EEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCeEEEEcCCCCcEEeecCCC----CCCccc-e----eEEcC-CeEEEeCCCCeEEEEECCCCcEe
Confidence            467888888866555543210    111111 1    22345 57778999999999999999876

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.36  E-value=12  Score=31.46  Aligned_cols=40  Identities=20%  Similarity=0.322  Sum_probs=29.0

Q ss_pred             cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEecc
Q 015363          113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW  154 (408)
Q Consensus       113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  154 (408)
                      ....+|+|.|  +|++|++--..|.|++++..+++...+...
T Consensus        27 ~~P~~la~~p--dg~llVter~~G~i~~v~~~~g~~~~i~~~   66 (450)
T d1crua_          27 NKPHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQV   66 (450)
T ss_dssp             SSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEEC
T ss_pred             CCceEEEEeC--CCeEEEEEecCCEEEEEECCCCcEeecccC
Confidence            3477999965  487666654579999999888876665544