Citrus Sinensis ID: 015366

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPSSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTATGALVAPQTSAVISASSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGILILFSFKFQYLQLQSNGHFILSDKKEKNWQFFFLFIVFFFLFTTGWKHSILLSGFFQAGVHFIHAVFWLAIYTNSVWINTNNLSFI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccHEEEEcccccEEEcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccc
Coil and Loop (DISEMBL)
MERQKAQLQERMAVVKDMLRNTEIAVRSFMmlrprflhpnagsassatapsqasgataapsstgqpasssvvpvfdfyrglpkkpsaFLQQTVARFEKYLGEFRQWIEELEQLIlldpdrnssshgsslLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAdqrrrgdgsdpfleADRRETARQEAAAKrvhptlhlpvnsqpsaqvggsltntatgalvapqtsavisassggglslfstpssapassmssslfatpatsaspsslfgsgvspqmsssslfaASTLslfgstvpsfgsttsagaslfstpfasGILILFSFKFQYLqlqsnghfilsdkkekNWQFFFLFIVFFFLFTTGWKHSILLSGFFQAGVHFIHAVFWLAIYTNSVwintnnlsfi
Flexible Loop (DISEMBL)
merqkaqlQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATaapsstgqpasSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAAAkrvhptlhlpvnsqPSAQVGGSLTNTATGALVAPQTSAVISASSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGILILFSFKFQYLQLQSNGHFILSDKKEKNWQFFFLFIVFFFLFTTGWKHSILLSGFFQAGVHFIHAVFWLAIYTNSVWINTNNLSFI
Low Complexity Region (SEG)
MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNagsassatapsqasgataapsstgqPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWieeleqlillDPDRNssshgssllqslPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTATGALVAPQtsavisassggglslfstpssapassmssslfatpatsaspsslfGsgvspqmsssslfaastlslfgsTVPSFGSTTSAGASLFSTPFASGILILFSFKFQYLQLQSNGHFILSDKKEKNWQffflfivffflfTTGWKHSILLSGFFQAGVHFIHAVFWLAIYTNSVWINTNNLSFI
Disordered region (IsUnstruct)
*************VVKDMLRNTEIAVRSFMMLRPRF**********************************VVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLD*************QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA****************************************************************************************************************************TLSLFGSTVPSFGSTTSAGASLFSTPFASGILILFSFKFQYLQLQSNGHFILSDKKEKNWQFFFLFIVFFFLFTTGWKHSILLSGFFQAGVHFIHAVFWLAIYTNSVWINTNNL***
Disordered Region (DISOPRED)
*********ERMAVVKDMLRNTEIAVRSFMMLRPR**********************************SVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQL*******************LPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDG************************************************************************************************************************************************************YLQLQSN**FILSDKKEKNWQFFFLFIVFFFLFTTGWKHSILLSGFFQAGVHFIHAVFWLAIYTNSVWINTNNLSFI
Disordered Region (DISEMBL)
*********ERMAVVKDMLRNTEIAVRSFMMLRPRFLHPN*****************************SVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPD**********LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEA**************VHPTLHLPVNSQPSAQVGGSLTNTATGALVAPQTSAVISASSGGGLSL***************************************SSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGILILFSFKFQYLQLQSNGHFILSDKKEKNWQFFFLFIVFFFLFTTGWKHSILLSGFFQAGVHFIHAVFWLAIYTNSVWINTNNLSFI
Disordered Region (DISPRO)
**RQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLH******************************SSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAA*KRVHPTLHLPVNSQPSAQVGGSLT***********************************************************************************SFGST*S*GASLFSTPFASGILILFSFKFQYLQLQSNGHFILSDKKEKNWQFFFLFIVFFFLFTTGWKHSILLSGFFQAGVHFIHAVFWLAIYTNSVWINTNNLSF*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERQxxxxxxxxxxxxxxxxxxxxxVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPSSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTATGALVAPQTSAVISASSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGILILFSFKFQYLQLQSNGHFILSDKKEKNWQFFFLFIVFFFLFTTGWKHSILLSGFFQAGVHFIHAVFWLAIYTNSVWINTNNLSFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
P70581	585	Nucleoporin p58/p45 OS=Ra	yes	no	0.259	0.181	0.342	3e-06
Q8R332	587	Nucleoporin p58/p45 OS=Mu	yes	no	0.259	0.180	0.350	3e-06
P84752	361	Peroxidase A (Fragments)	N/A	no	0.080	0.091	0.666	9e-06
Q9BVL2	599	Nucleoporin p58/p45 OS=Ho	yes	no	0.237	0.161	0.330	2e-05

>sp|P70581|NUPL1_RAT Nucleoporin p58/p45 OS=Rattus norvegicus GN=Nupl1 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 8/114 (7%)

Query: 85  PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144
           P+ + +  V +FE  L ++RQ IEELE  +    +   +SH +   Q L   +  ++  F
Sbjct: 328 PADYFRVLVQQFEVQLQQYRQQIEELENHLATQAN---NSHITP--QDLSMAMQKIYQTF 382

Query: 145 VHVAAKAESIHQYVETMKTAYLADQRR-RGDGSDPFLEADRRETARQEAAAKRV 197
           V +AA+ +SIH+ V+ +K  YL+ ++   GD  D F EA RR  A++   A RV
Sbjct: 383 VALAAQLQSIHENVKVLKEQYLSYRKMFLGDAGDVF-EA-RRTEAKKWQNAPRV 434

Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane.
Rattus norvegicus (taxid: 10116)

>sp|Q8R332|NUPL1_MOUSE Nucleoporin p58/p45 OS=Mus musculus GN=Nupl1 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 8/114 (7%)

Query: 85  PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144
           P+ + +  V +FE  L ++RQ IEELE  +     + S+SH +   Q L   +  ++  F
Sbjct: 330 PADYFRILVQQFEVQLQQYRQQIEELENHLAT---QASNSHITP--QDLSMAMQKIYQTF 384

Query: 145 VHVAAKAESIHQYVETMKTAYLADQRR-RGDGSDPFLEADRRETARQEAAAKRV 197
           V +AA+ +SIH+ V+ +K  YL  ++   GD  D F EA RR  A++   A RV
Sbjct: 385 VALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVF-EA-RRTEAKKWQNAPRV 436

Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane.

Mus musculus (taxid: 10090)

>sp|P84752|PERA_ALOVR Peroxidase A (Fragments) OS=Aloe vera PE=1 SV=1

 Score = 52.0 bits (123), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 28/33 (84%)

Query: 135 QVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167
           +V+SNVH FFVHVAAK ESIHQY+E+M+   L+
Sbjct: 79  RVMSNVHDFFVHVAAKVESIHQYIESMRYGSLS 111

Aloe vera (taxid: 34199)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9BVL2|NUPL1_HUMAN Nucleoporin p58/p45 OS=Homo sapiens GN=NUPL1 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 12/109 (11%)

Query: 85  PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144
           P+ + +  V +FE  L ++RQ IEELE  +    +   +SH +   Q L   +  ++  F
Sbjct: 342 PADYFRILVQQFEVQLQQYRQQIEELENHLATQAN---NSHITP--QDLSMAMQKIYQTF 396

Query: 145 VHVAAKAESIHQYVETMKTAYLADQRR-RGDGSDPFLEADRRETARQEA 192
           V +AA+ +SIH+ V+ +K  YL  ++   GD  D F      ET R EA
Sbjct: 397 VALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVF------ETRRAEA 439

Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
449448356	507	PREDICTED: uncharacterized protein LOC10	0.786	0.633	0.655	1e-109
449520531	502	PREDICTED: uncharacterized LOC101220360	0.774	0.629	0.662	1e-109
449448358	504	PREDICTED: uncharacterized protein LOC10	0.774	0.626	0.662	1e-108
356496828	470	PREDICTED: uncharacterized protein LOC10	0.764	0.663	0.709	3e-98
357483099	489	Peroxidase A [Medicago truncatula] gi|35	0.762	0.635	0.653	4e-97
356537726	485	PREDICTED: uncharacterized protein LOC10	0.767	0.645	0.697	2e-94
224096852	486	predicted protein [Populus trichocarpa]	0.767	0.644	0.695	4e-93
4006864	595	nucleoporin-like protein [Arabidopsis th	0.732	0.502	0.612	7e-93
30690871	513	hydroxyproline-rich glycoprotein family	0.732	0.582	0.612	1e-92
297798186	503	hydroxyproline-rich glycoprotein family	0.732	0.594	0.606	8e-92

>gi|449448356|ref|XP_004141932.1| PREDICTED: uncharacterized protein LOC101220360 isoform 1 [Cucumis sativus]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/334 (65%), Positives = 258/334 (77%), Gaps = 13/334 (3%)

Query: 2   ERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPS 61
           E QK  LQE MA  K+ML NTE+A+RSFMM+RPRFLH +AG AS+ TAPSQ  GAT    
Sbjct: 154 EHQKVMLQELMAAAKEMLWNTEVAIRSFMMIRPRFLHQSAGGASNPTAPSQVPGATTPLG 213

Query: 62  STGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRN 121
           S+GQP S+S+ PVFDFY GLP+KPS FLQQTV+RFEKYL E RQWIE+LEQL++LD +R+
Sbjct: 214 SSGQPTSTSIAPVFDFYSGLPRKPSPFLQQTVSRFEKYLAECRQWIEDLEQLLVLDSNRS 273

Query: 122 SSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLE 181
           +S+  SSL QSLP+++SNVH FFVHVA+K ESIHQY+E+MK+AYLADQRRRGDG++PFLE
Sbjct: 274 ASNSSSSLFQSLPKIMSNVHEFFVHVASKVESIHQYIESMKSAYLADQRRRGDGNNPFLE 333

Query: 182 ADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTAT-GALVAPQTSAVIS-ASSG 239
           ADRRETARQEAAAKR HPTLHLP NSQPS Q  G L N+   GA    Q+S V + ASSG
Sbjct: 334 ADRRETARQEAAAKRAHPTLHLPTNSQPSTQATGLLANSGNHGASTVQQSSTVATPASSG 393

Query: 240 GGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSL---- 295
           GGLSLFSTP SAP S+ +SSLF TP  S   SSLFGS  S   + S+LF +S+  L    
Sbjct: 394 GGLSLFSTP-SAP-STTTSSLFMTPTASVQTSSLFGS--SSVAAPSTLFGSSSAPLFSSA 449

Query: 296 ---FGSTVPSFGSTTSAGASLFSTPFASGILILF 326
              FGST PSFG + SAG+SLFSTPFASG  + F
Sbjct: 450 STPFGSTAPSFGQSASAGSSLFSTPFASGSFLTF 483

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520531|ref|XP_004167287.1| PREDICTED: uncharacterized LOC101220360 [Cucumis sativus]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/329 (66%), Positives = 256/329 (77%), Gaps = 13/329 (3%)

Query: 2   ERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPS 61
           E QK  LQE MA  K+ML NTE+A+RSFMM+RPRFLH +AG AS+ TAPSQ  GAT    
Sbjct: 152 EHQKVMLQELMAAAKEMLWNTEVAIRSFMMIRPRFLHQSAGGASNPTAPSQVPGATTPLG 211

Query: 62  STGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRN 121
           S+GQP S+S+ PVFDFY GLP+KPS FLQQTV+RFEKYL E RQWIE+LEQL++LD +R+
Sbjct: 212 SSGQPTSTSIAPVFDFYSGLPRKPSPFLQQTVSRFEKYLAECRQWIEDLEQLLVLDSNRS 271

Query: 122 SSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLE 181
           +S+  SSL QSLP+++SNVH FFVHVA+K ESIHQY+E+MK+AYLADQRRRGDG++PFLE
Sbjct: 272 ASNSSSSLFQSLPKIMSNVHEFFVHVASKVESIHQYIESMKSAYLADQRRRGDGNNPFLE 331

Query: 182 ADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTAT-GALVAPQTSAVIS-ASSG 239
           ADRRETARQEAAAKR HPTLHLP NSQPS Q  G L N+   GA    Q+S V + ASSG
Sbjct: 332 ADRRETARQEAAAKRAHPTLHLPTNSQPSTQAAGLLANSGNHGASTVQQSSTVATPASSG 391

Query: 240 GGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSL---- 295
           GGLSLFSTP SAP S+ +SSLF TP  S   SSLFGS  S   + S+LF +S+  L    
Sbjct: 392 GGLSLFSTP-SAP-STTTSSLFMTPTASVQTSSLFGS--SSVAAPSTLFGSSSAPLFSSA 447

Query: 296 ---FGSTVPSFGSTTSAGASLFSTPFASG 321
              FGST PSFG + SAG+SLFSTPFASG
Sbjct: 448 STPFGSTAPSFGQSASAGSSLFSTPFASG 476

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448358|ref|XP_004141933.1| PREDICTED: uncharacterized protein LOC101220360 isoform 2 [Cucumis sativus]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/329 (66%), Positives = 256/329 (77%), Gaps = 13/329 (3%)

Query: 2   ERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPS 61
           E QK  LQE MA  K+ML NTE+A+RSFMM+RPRFLH +AG AS+ TAPSQ  GAT    
Sbjct: 154 EHQKVMLQELMAAAKEMLWNTEVAIRSFMMIRPRFLHQSAGGASNPTAPSQVPGATTPLG 213

Query: 62  STGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRN 121
           S+GQP S+S+ PVFDFY GLP+KPS FLQQTV+RFEKYL E RQWIE+LEQL++LD +R+
Sbjct: 214 SSGQPTSTSIAPVFDFYSGLPRKPSPFLQQTVSRFEKYLAECRQWIEDLEQLLVLDSNRS 273

Query: 122 SSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLE 181
           +S+  SSL QSLP+++SNVH FFVHVA+K ESIHQY+E+MK+AYLADQRRRGDG++PFLE
Sbjct: 274 ASNSSSSLFQSLPKIMSNVHEFFVHVASKVESIHQYIESMKSAYLADQRRRGDGNNPFLE 333

Query: 182 ADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTAT-GALVAPQTSAVIS-ASSG 239
           ADRRETARQEAAAKR HPTLHLP NSQPS Q  G L N+   GA    Q+S V + ASSG
Sbjct: 334 ADRRETARQEAAAKRAHPTLHLPTNSQPSTQATGLLANSGNHGASTVQQSSTVATPASSG 393

Query: 240 GGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSL---- 295
           GGLSLFSTP SAP S+ +SSLF TP  S   SSLFGS  S   + S+LF +S+  L    
Sbjct: 394 GGLSLFSTP-SAP-STTTSSLFMTPTASVQTSSLFGS--SSVAAPSTLFGSSSAPLFSSA 449

Query: 296 ---FGSTVPSFGSTTSAGASLFSTPFASG 321
              FGST PSFG + SAG+SLFSTPFASG
Sbjct: 450 STPFGSTAPSFGQSASAGSSLFSTPFASG 478

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496828|ref|XP_003517267.1| PREDICTED: uncharacterized protein LOC100776992 [Glycine max]

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 230/324 (70%), Positives = 263/324 (81%), Gaps = 12/324 (3%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAP 60
           MERQK  LQE M+ VKDMLRNTE+AVRSFMMLRPRFLHP+ G+ SSATAPSQ  GAT AP
Sbjct: 131 MERQKTLLQELMSTVKDMLRNTEVAVRSFMMLRPRFLHPSGGT-SSATAPSQTPGATIAP 189

Query: 61  SSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDR 120
           SS+ QP ++S+VPVFDFY GLPKKPS FLQQTV RFEKYLGE  QWIEELEQL+LLD +R
Sbjct: 190 SSSSQPTTASIVPVFDFYSGLPKKPSPFLQQTVLRFEKYLGECHQWIEELEQLLLLDSER 249

Query: 121 NSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFL 180
           N+S++GSSLLQSLP+V++NVH FFVHVAAK ESIHQY+E+MK+AYLADQRRRG+ +DPFL
Sbjct: 250 NASANGSSLLQSLPKVMTNVHDFFVHVAAKVESIHQYIESMKSAYLADQRRRGEVNDPFL 309

Query: 181 EADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTAT-GALVAPQ-TSAVISASS 238
           EADRRETARQEAA+KRVHPTLHLP NSQPS QV G  +++ T  AL APQ ++A  S SS
Sbjct: 310 EADRRETARQEAASKRVHPTLHLPANSQPSTQVAGLFSSSGTQAALTAPQTSAATSSLSS 369

Query: 239 GGGLSLFSTPSSAPASSMSSSLFATPATSASP-SSLFGSGVSPQMSSSSLFAASTLSLFG 297
           G G SLFSTPSSAP+SSM SSLF TP  +  P +SLFGS   P        +AST SLFG
Sbjct: 370 GSGFSLFSTPSSAPSSSMLSSLFTTPTPAPGPQTSLFGSTSVPG-------SASTPSLFG 422

Query: 298 STVPSFGSTTSAGASLFSTPFASG 321
           +T P F STT A  SLFS+PF SG
Sbjct: 423 NTTPLF-STTPATNSLFSSPFVSG 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483099|ref|XP_003611836.1| Peroxidase A [Medicago truncatula] gi|355513171|gb|AES94794.1| Peroxidase A [Medicago truncatula]

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 219/335 (65%), Positives = 257/335 (76%), Gaps = 24/335 (7%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAP 60
           MERQK  LQE  + VKDMLRNTE+AVRSFM+LRPRF +P+ G ASSATAPSQ  GAT  P
Sbjct: 142 MERQKTLLQELTSAVKDMLRNTEVAVRSFMILRPRFHYPSGG-ASSATAPSQTPGATT-P 199

Query: 61  SSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDR 120
           S   QP ++S+VPVFDFY GLPKKPS FLQQT+ RFEKY+GE  QWI+ELEQL+LL+ ++
Sbjct: 200 SLNSQPPATSMVPVFDFYSGLPKKPSPFLQQTILRFEKYIGECHQWIQELEQLLLLESEK 259

Query: 121 NSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFL 180
           N+SS+GSSLLQSLP+V++NVH FFVHVAAK ESIHQY+E+MKTAYLADQRRRG+ +DPFL
Sbjct: 260 NASSNGSSLLQSLPKVMTNVHDFFVHVAAKVESIHQYMESMKTAYLADQRRRGEVNDPFL 319

Query: 181 EADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTAT-GALVAPQTSAVI-SASS 238
           EADRRETARQEAA+KRVHPTLHLP NSQPS QV G  +++ T GALV+ QT+A   S S 
Sbjct: 320 EADRRETARQEAASKRVHPTLHLPANSQPSTQVAGLFSSSGTQGALVSQQTAATTPSLSI 379

Query: 239 GGGLSLFSTPSSAPASSMSSSLFATPATSA------SPS------SLFGSGVSPQMSSSS 286
           G G SLF+TPSSAP  S + SLF TP T A      +PS      SLFGS      SSS 
Sbjct: 380 GSGSSLFNTPSSAP--STTPSLFGTPTTPAQGASWPAPSSSTPQGSLFGSA-----SSSL 432

Query: 287 LFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASG 321
             A ST SLFG++ P F S T AG S+F +P+ SG
Sbjct: 433 PGATSTPSLFGNSTPLFNS-TPAGTSVFPSPYVSG 466

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537726|ref|XP_003537376.1| PREDICTED: uncharacterized protein LOC100805204 [Glycine max]

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 226/324 (69%), Positives = 261/324 (80%), Gaps = 11/324 (3%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAP 60
           MERQK  L E M+ VKDMLRNTE+AVRSFMMLRPRFLHP+ G+ SSATAPSQ  GAT AP
Sbjct: 145 MERQKTLLHELMSTVKDMLRNTEVAVRSFMMLRPRFLHPSGGT-SSATAPSQTPGATIAP 203

Query: 61  SSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDR 120
           SS+ QP ++S+VPVFDFY GLP+KPS FLQQTV RFEKYLGE  QWIEELEQL+LL+ +R
Sbjct: 204 SSSSQPTTASIVPVFDFYSGLPRKPSPFLQQTVLRFEKYLGECHQWIEELEQLLLLESER 263

Query: 121 NSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFL 180
           N+SS+GSSLLQSLP+V++NVH FFVHVAAK ESIHQY+E+MK+AYLADQR RG+ +DPFL
Sbjct: 264 NASSNGSSLLQSLPKVMTNVHDFFVHVAAKVESIHQYIESMKSAYLADQRHRGEVNDPFL 323

Query: 181 EADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTAT-GALVAPQ-TSAVISASS 238
           EADRRETARQEAA+KRVHPTLHLP NSQPS QV G  +++ T  AL APQ  ++  S SS
Sbjct: 324 EADRRETARQEAASKRVHPTLHLPANSQPSTQVAGLFSSSGTQAALPAPQTAASTSSLSS 383

Query: 239 GGGLSLFSTPSSAPASSMSSSLFATPATSASP-SSLFGSGVSPQMSSSSLFAASTLSLFG 297
           G GLSLFSTPSSAP+SSM SSLFATP  +  P +SLFGS      ++      ST SLFG
Sbjct: 384 GSGLSLFSTPSSAPSSSMLSSLFATPTPAPGPQTSLFGS------TTPVPGPVSTPSLFG 437

Query: 298 STVPSFGSTTSAGASLFSTPFASG 321
           +T P F STT A  SLFS+PF SG
Sbjct: 438 NTTPLF-STTPATNSLFSSPFVSG 460

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096852|ref|XP_002310761.1| predicted protein [Populus trichocarpa] gi|222853664|gb|EEE91211.1| predicted protein [Populus trichocarpa]

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 231/332 (69%), Positives = 255/332 (76%), Gaps = 19/332 (5%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGS-ASSATAPSQASGATAA 59
           MERQKA LQE M  VKDMLRNTE+AVRSFMML PRFLH NAG  AS+ATAPSQ  G T  
Sbjct: 157 MERQKALLQELMTNVKDMLRNTEMAVRSFMMLHPRFLHSNAGGGASNATAPSQPPGTTGI 216

Query: 60  PSSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPD 119
           P ST QPASSS+VPVFDFY GLPKKPS FLQQTVARFEKYLGE  QWIEELEQL+LLD +
Sbjct: 217 PGSTSQPASSSIVPVFDFYSGLPKKPSPFLQQTVARFEKYLGECSQWIEELEQLLLLDSE 276

Query: 120 RNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPF 179
           RNSS  GSSLLQSLP+V+SNVH FFVHVAAK ESIHQY+E+MKTAYL DQRRRGDG+DPF
Sbjct: 277 RNSSHPGSSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLVDQRRRGDGNDPF 336

Query: 180 LEADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSL-TNTATGALVAPQ---TSAVIS 235
           LEADRRE AR+EAAAKR HPTLHLP NSQPS Q  G   ++  + A  APQ    +A   
Sbjct: 337 LEADRRERARKEAAAKRAHPTLHLPANSQPSTQGAGLFASSATSSASTAPQASTATAPAP 396

Query: 236 ASSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQM------------S 283
           ASSG   SLF+T  S P+SSMSSSLFATP TSA  S+LFGS  +P +            S
Sbjct: 397 ASSGNAFSLFNT-PSVPSSSMSSSLFATPTTSAPVSTLFGSAATPSLFGSATQAFGASSS 455

Query: 284 SSSLFAASTLSLFGSTVPSFGSTTSAGASLFS 315
           + +L +AST SLFGST P+FG T SAG SLFS
Sbjct: 456 APALGSASTPSLFGSTTPAFG-TISAGGSLFS 486

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4006864|emb|CAB16782.1| nucleoporin-like protein [Arabidopsis thaliana] gi|7270662|emb|CAB80379.1| nucleoporin-like protein [Arabidopsis thaliana]

 Score =  347 bits (889), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 193/315 (61%), Positives = 228/315 (72%), Gaps = 16/315 (5%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLH--PNAGSASSATAPSQASGATA 58
           M+RQKA L E M V KDMLRN EIAVRSFMML+PRF H     G  S  + PSQ  G   
Sbjct: 171 MDRQKAVLHELMIVAKDMLRNAEIAVRSFMMLQPRFPHWKQGGGVVSVGSQPSQGQGTNP 230

Query: 59  APSSTGQP-ASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117
           AP+S+GQ  A ++ V V DFYRG+PKKP+AFL QTV RFEKYL E RQW+EELEQL+ LD
Sbjct: 231 APASSGQQQAVTTTVQVSDFYRGIPKKPTAFLLQTVVRFEKYLNECRQWVEELEQLLALD 290

Query: 118 PDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSD 177
            D+ S    +SLL+SLP+V+SNVH FFVHVAAK ESIHQY+E+M+T+YLADQRRRG+  D
Sbjct: 291 SDKYS--RHASLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHD 348

Query: 178 PFLEADRRETARQEAAAKRVHPTLHLP---VNSQPSAQVGGSLTNTAT-GALVAPQTSAV 233
           PFLEADRRETA+QEAAAKRVHPTLHLP    ++QPS QV G + ++AT G    PQTS  
Sbjct: 349 PFLEADRRETAKQEAAAKRVHPTLHLPASTTSTQPSTQVAGLIASSATPGGSNPPQTSVP 408

Query: 234 IS-ASSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAAST 292
            S  SSG G S  +TP+S P    SSSLFATP+++A  SSLFG   SP  + + LF +S 
Sbjct: 409 TSNPSSGAGFSFLNTPASGP----SSSLFATPSSTAPTSSLFGP--SPTPTQTPLFGSSP 462

Query: 293 LSLFGSTVPSFGSTT 307
            S FGST   FG TT
Sbjct: 463 ASTFGSTQSLFGQTT 477

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690871|ref|NP_195430.2| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] gi|20260346|gb|AAM13071.1| unknown protein [Arabidopsis thaliana] gi|31711924|gb|AAP68318.1| At4g37130 [Arabidopsis thaliana] gi|332661357|gb|AEE86757.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/315 (61%), Positives = 228/315 (72%), Gaps = 16/315 (5%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLH--PNAGSASSATAPSQASGATA 58
           M+RQKA L E M V KDMLRN EIAVRSFMML+PRF H     G  S  + PSQ  G   
Sbjct: 171 MDRQKAVLHELMIVAKDMLRNAEIAVRSFMMLQPRFPHWKQGGGVVSVGSQPSQGQGTNP 230

Query: 59  APSSTGQP-ASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117
           AP+S+GQ  A ++ V V DFYRG+PKKP+AFL QTV RFEKYL E RQW+EELEQL+ LD
Sbjct: 231 APASSGQQQAVTTTVQVSDFYRGIPKKPTAFLLQTVVRFEKYLNECRQWVEELEQLLALD 290

Query: 118 PDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSD 177
            D+ S    +SLL+SLP+V+SNVH FFVHVAAK ESIHQY+E+M+T+YLADQRRRG+  D
Sbjct: 291 SDKYS--RHASLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHD 348

Query: 178 PFLEADRRETARQEAAAKRVHPTLHLP---VNSQPSAQVGGSLTNTAT-GALVAPQTSAV 233
           PFLEADRRETA+QEAAAKRVHPTLHLP    ++QPS QV G + ++AT G    PQTS  
Sbjct: 349 PFLEADRRETAKQEAAAKRVHPTLHLPASTTSTQPSTQVAGLIASSATPGGSNPPQTSVP 408

Query: 234 IS-ASSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAAST 292
            S  SSG G S  +TP+S P    SSSLFATP+++A  SSLFG   SP  + + LF +S 
Sbjct: 409 TSNPSSGAGFSFLNTPASGP----SSSLFATPSSTAPTSSLFGP--SPTPTQTPLFGSSP 462

Query: 293 LSLFGSTVPSFGSTT 307
            S FGST   FG TT
Sbjct: 463 ASTFGSTQSLFGQTT 477

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798186|ref|XP_002866977.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata] gi|297312813|gb|EFH43236.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  343 bits (881), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 191/315 (60%), Positives = 228/315 (72%), Gaps = 16/315 (5%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLH--PNAGSASSATAPSQASGATA 58
           M+RQKA L E M V KDMLRN EIAVRSFMML+PRF H     G  S  + PSQ  G   
Sbjct: 161 MDRQKAVLHELMIVAKDMLRNAEIAVRSFMMLQPRFPHWKQGGGVVSVGSQPSQGQGTNP 220

Query: 59  APSSTGQP-ASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117
           AP+S+GQ  A ++ V V DFYRG+PKKP+AFL QTV RFEKYL E RQW+EELEQL+ LD
Sbjct: 221 APASSGQQQAVTTTVQVSDFYRGIPKKPTAFLLQTVGRFEKYLNECRQWVEELEQLLALD 280

Query: 118 PDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSD 177
            D+ +    +SLL+SLP+V+SNVH FFVHVAAK ESIHQY+E+M+T+YLADQRRRG+  D
Sbjct: 281 SDKYN--RHASLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHD 338

Query: 178 PFLEADRRETARQEAAAKRVHPTLHLP---VNSQPSAQVGGSLTNTAT-GALVAPQTSAV 233
           PFLEADRRETA+QEAAAKRVHPTLHLP    ++QPS QV G + ++AT GA   PQTS  
Sbjct: 339 PFLEADRRETAKQEAAAKRVHPTLHLPASTTSTQPSTQVTGLIASSATPGASNPPQTSVP 398

Query: 234 IS-ASSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAAST 292
            S  SSG G S  +TP+S P    SSS+FATP+++A  SSLFG   SP  + + LF +S 
Sbjct: 399 TSNPSSGAGFSFLNTPASGP----SSSIFATPSSTAPTSSLFGP--SPTATQTPLFGSSP 452

Query: 293 LSLFGSTVPSFGSTT 307
            S FGS    FG TT
Sbjct: 453 ASTFGSAQSLFGQTT 467

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2115055	513	AT4G37130 [Arabidopsis thalian	0.556	0.442	0.546	9.9e-60

TAIR|locus:2115055 AT4G37130 [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
 Identities = 129/236 (54%), Positives = 149/236 (63%)

Query:     1 MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLH---PNXXXXXXXXXXXXXXXXX 57
             M+RQKA L E M V KDMLRN EIAVRSFMML+PRF H                      
Sbjct:   171 MDRQKAVLHELMIVAKDMLRNAEIAVRSFMMLQPRFPHWKQGGGVVSVGSQPSQGQGTNP 230

Query:    58 XXXXXXXXPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWXXXXXXXXXXD 117
                      A ++ V V DFYRG+PKKP+AFL QTV RFEKYL E RQW          D
Sbjct:   231 APASSGQQQAVTTTVQVSDFYRGIPKKPTAFLLQTVVRFEKYLNECRQWVEELEQLLALD 290

Query:   118 PDRNXXXXXXXXXXXXPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSD 177
              D+             P+V+SNVH FFVHVAAK ESIHQY+E+M+T+YLADQRRRG+  D
Sbjct:   291 SDK--YSRHASLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHD 348

Query:   178 PFLEADRRETARQEAAAKRVHPTLHLPVNS---QPSAQVGGSLTNTAT-GALVAPQ 229
             PFLEADRRETA+QEAAAKRVHPTLHLP ++   QPS QV G + ++AT G    PQ
Sbjct:   349 PFLEADRRETAKQEAAAKRVHPTLHLPASTTSTQPSTQVAGLIASSATPGGSNPPQ 404

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00004031001 SubName- Full=Chromosome undetermined scaffold_585, whole genome shotgun sequence; (558 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
PRK08392	215	PRK08392, PRK08392, hypothetical protein; Provisio	0.001

>gnl|CDD|169423 PRK08392, PRK08392, hypothetical protein; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 92  TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHG----SSLLQSLPQVISNVHIFFVHV 147
           T ++F  Y+ E RQW EE E ++L   + N + +G        + L  VI++VH +F   
Sbjct: 41  TPSKFNAYINEIRQWGEESEIVVLAGIEANITPNGVDITDDFAKKLDYVIASVHEWF--- 97

Query: 148 AAKAESIHQYVETMKTAYLAD 168
                  H+Y+E +K A + +
Sbjct: 98  --GRPEHHEYIELVKLALMDE 116

Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
KOG0774	334	consensus Transcription factor PBX and related HOX	94.85
PF13634	113	Nucleoporin_FG: Nucleoporin FG repeat region	93.74
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	93.44
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	93.05
PF06013	86	WXG100: Proteins of 100 residues with WXG; InterPr	92.46
PF13634	113	Nucleoporin_FG: Nucleoporin FG repeat region	92.25
PF14644	208	DUF4456: Domain of unknown function (DUF4456)	89.93
PF00435	105	Spectrin: Spectrin repeat; InterPro: IPR002017 Spe	89.51
PF14644	208	DUF4456: Domain of unknown function (DUF4456)	86.27
smart00150	101	SPEC Spectrin repeats.	84.95
PF03961	451	DUF342: Protein of unknown function (DUF342); Inte	84.77
PF10392	132	COG5: Golgi transport complex subunit 5; InterPro:	82.84
PRK04406	75	hypothetical protein; Provisional	82.39
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	82.32
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	81.65

>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]

Probab=94.85  E-value=0.39  Score=48.34  Aligned_cols=75  Identities=15%  Similarity=0.283  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Q 015366           94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAE-SIHQYVETMKTAYLADQRRR  172 (408)
Q Consensus        94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla-~LHE~Ve~lKE~YL~~rRr~  172 (408)
                      +..|++=+.|+.+.+-++.+|+-.+.  -.++.   ++++...+..+|.-|.++.-+|. +.-|+|=.+|..||..||++
T Consensus       118 ~ElekyeqaCneftthV~nlL~eQsr--~RPi~---~ke~e~m~~~i~~kF~~iq~~lkqstce~vmiLr~r~ldarRKR  192 (334)
T KOG0774|consen  118 NELEKYEQACNEFTTHVMNLLREQSR--TRPIM---PKEIERMVQIISKKFSHIQMQLKQSTCEAVMILRSRFLDARRKR  192 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34555556778888899999987654  34454   99999999999999999966663 45567889999999999954


Q ss_pred             C
Q 015366          173 G  173 (408)
Q Consensus       173 G  173 (408)
                      .
T Consensus       193 R  193 (334)
T KOG0774|consen  193 R  193 (334)
T ss_pred             c
Confidence            3

>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region

Probab=93.74  E-value=0.28  Score=42.24  Aligned_cols=8  Identities=38%  Similarity=0.700  Sum_probs=4.2

Q ss_pred             ccCCCCCC
Q 015366          292 TLSLFGST  299 (408)
Q Consensus       292 t~~~FGs~  299 (408)
                      ..++||..
T Consensus        86 ~~~lFG~~   93 (113)
T PF13634_consen   86 SGGLFGQS   93 (113)
T ss_pred             CCcccCCC
Confidence            44556653

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.44  E-value=0.23  Score=52.99  Aligned_cols=19  Identities=32%  Similarity=0.712  Sum_probs=10.4

Q ss_pred             ccccc-cCCCCCCCCCCCCC
Q 015366          258 SSLFA-TPATSASPSSLFGS  276 (408)
Q Consensus       258 ~slF~-tp~t~~~~~~lfgs  276 (408)
                      +++|| +|+|.+.++.+||.
T Consensus        36 g~~fgs~p~~~taTt~~fG~   55 (508)
T KOG3091|consen   36 GGAFGSQPTTGTATTGLFGA   55 (508)
T ss_pred             ccccccCCCCCCcccccccc
Confidence            35555 44555556666663

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.05  E-value=0.32  Score=52.02  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=16.6

Q ss_pred             cccccCCCCCCCCCCCCCCCCCC
Q 015366          259 SLFATPATSASPSSLFGSGVSPQ  281 (408)
Q Consensus       259 slF~tp~t~~~~~~lfgs~~s~~  281 (408)
                      +.||+-.+++..+.+||+...-+
T Consensus        74 s~~~~s~~t~~g~g~fgs~~g~~   96 (508)
T KOG3091|consen   74 SGFGTSTATGAGGGFFGSQSGQQ   96 (508)
T ss_pred             cccccCCccCCccCcccccccee
Confidence            57888778888888888754433

>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis

Probab=92.46  E-value=1.8  Score=32.58  Aligned_cols=78  Identities=12%  Similarity=0.121  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366           87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL  166 (408)
Q Consensus        87 pFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL  166 (408)
                      +=+.+++..++.....++..+++|+..+....+. =.+   .+-+.....+.++++.|-.+...|..+.+.+...++.|.
T Consensus         7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~-W~G---~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~~   82 (86)
T PF06013_consen    7 EQLRAAAQQLQAQADELQSQLQQLESSIDSLQAS-WQG---EAADAFQDKFEEWNQAFRQLNEALEELSQALRQAAQNYE   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-BTS---STSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467778888888888888888888888655321 112   235677888999999999999999999999999999987


Q ss_pred             HH
Q 015366          167 AD  168 (408)
Q Consensus       167 ~~  168 (408)
                      +.
T Consensus        83 ~~   84 (86)
T PF06013_consen   83 QA   84 (86)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....

>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region

Probab=92.25  E-value=0.72  Score=39.74  Aligned_cols=52  Identities=33%  Similarity=0.487  Sum_probs=27.0

Q ss_pred             ccccccCCC---CCCCCCCCCCCCCCCCCCCcccCCcccCCCCCCCCCCCCCCCCCcccccCC
Q 015366          258 SSLFATPAT---SASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTP  317 (408)
Q Consensus       258 ~slF~tp~t---~~~~~~lfgs~~s~~~stp~~g~~st~~~FGs~tpsf~st~~~g~slFstp  317 (408)
                      .+|||...+   ...+++|||.....      --.+++.++||.....=.  ...+++||..+
T Consensus        39 ~~LFG~~~~~~~~~~~~~LFG~~~~~------~~~~~~~~lFG~~~~~~~--~~~~~~lFG~~   93 (113)
T PF13634_consen   39 GSLFGSTSTQTQATTTGGLFGSSNNT------QQQPSSGSLFGSTTATQQ--ATPSGGLFGQS   93 (113)
T ss_pred             CccCCCCCCCCCCCCCCcccCCCCCC------CCCCCCCcccCCCCCCCC--cCCCCcccCCC
Confidence            477775554   35677777763321      123455567776443212  22245666543

>PF14644 DUF4456: Domain of unknown function (DUF4456)

Probab=89.93  E-value=2.3  Score=39.95  Aligned_cols=84  Identities=19%  Similarity=0.232  Sum_probs=49.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366           86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQS-LPQVISNVHIFFVHVAAKAESIHQYVETMKTA  164 (408)
Q Consensus        86 SpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~-L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~  164 (408)
                      ..|..+.-+-+++-+++||.|++++|..+.....        -...+ +.....++...--.+.++.+...+..+++|+.
T Consensus        39 ~~~~~qa~~y~~~~~~elR~qv~~l~~~l~~v~~--------lv~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~k~~  110 (208)
T PF14644_consen   39 QSYQEQADEYHNSCLQELRNQVERLEELLPKVPE--------LVFESLLKRHWQKLCEAMKAIQEEFEQQQKQWEQQKDQ  110 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555556667778889999988853311        00111 11233444444445666666677777788888


Q ss_pred             HHHHHh-hcCCCCC
Q 015366          165 YLADQR-RRGDGSD  177 (408)
Q Consensus       165 YL~~rR-r~GD~~D  177 (408)
                      +.+..| .+|+..|
T Consensus       111 h~~~LrP~LghP~~  124 (208)
T PF14644_consen  111 HEQQLRPNLGHPDN  124 (208)
T ss_pred             HHHhCCCcCCCCCC
Confidence            888877 5775543

>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure

Probab=89.51  E-value=7.8  Score=29.56  Aligned_cols=66  Identities=17%  Similarity=0.270  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366           92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD  168 (408)
Q Consensus        92 lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~  168 (408)
                      ...+|+..+..+..||.+.|..|.....  +     ..+.++...+.+    +-.+-..+...+++|+.+.+.--.+
T Consensus         2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~--~-----~~~~~~~~~~~~----~~~~~~ei~~~~~~l~~l~~~~~~L   67 (105)
T PF00435_consen    2 QLQQFQQEADELLDWLQETEAKLSSSEP--G-----SDLEELEEQLKK----HKELQEEIESRQERLESLNEQAQQL   67 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCTH--S-----SSHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCC--C-----CCHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999943321  1     124444444443    3333445555666666666555555

These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....

>PF14644 DUF4456: Domain of unknown function (DUF4456)

Probab=86.27  E-value=5.9  Score=37.31  Aligned_cols=72  Identities=14%  Similarity=0.203  Sum_probs=45.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCcchhhhHHHHHHHHHhhccCCccccCCCCC
Q 015366          130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR-RRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVNS  207 (408)
Q Consensus       130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR-r~GD~~DPFaEAdRrE~Arkraaa~RV~Pt~~lPAp~  207 (408)
                      .+.+..-|+.+.+..-.|.+-|      ++.+++.|...-. ++.+..+.|..-.++-...+.++...++|++.-|...
T Consensus        53 ~~elR~qv~~l~~~l~~v~~lv------~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~k~~h~~~LrP~LghP~~~  125 (208)
T PF14644_consen   53 LQELRNQVERLEELLPKVPELV------FESLLKRHWQKLCEAMKAIQEEFEQQQKQWEQQKDQHEQQLRPNLGHPDNR  125 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCCCH
Confidence            4555555555555444443322      4455566655544 4666667776666667777888888999999987653

>smart00150 SPEC Spectrin repeats

Probab=84.95  E-value=15  Score=27.97  Aligned_cols=66  Identities=18%  Similarity=0.207  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366           95 RFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR  171 (408)
Q Consensus        95 ~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr  171 (408)
                      +|++.+.....||++.|..+....-  +     ..+..+...+    +.+-.+-..++..+++|+.+.+..-.+.+.
T Consensus         2 ~f~~~~~~l~~Wl~~~e~~l~~~~~--~-----~d~~~~~~~~----~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~   67 (101)
T smart00150        2 QFLRDADELEAWLSEKEALLASEDL--G-----KDLESVEALL----KKHEALEAELEAHEERVEALNELGEQLIEE   67 (101)
T ss_pred             chHHHHHHHHHHHHHHHHHHhCCCC--C-----CCHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence            6899999999999999987753311  1     1133333333    334444445566666677766665555444

>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function

Probab=84.77  E-value=7.9  Score=40.05  Aligned_cols=78  Identities=10%  Similarity=0.150  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366           87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPD-RNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAY  165 (408)
Q Consensus        87 pFF~elV~~FEerL~~yRQqIEELEr~L~s~s~-~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~Y  165 (408)
                      +.+.+..++.++++.+++.+++++++.+..... +...    ..+.+....++++.+.+..+-.+++.+.++++++++..
T Consensus       330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~----~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l  405 (451)
T PF03961_consen  330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQG----KLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL  405 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999999999999999999855432 1111    23567788888899999999999999999988888776


Q ss_pred             HHH
Q 015366          166 LAD  168 (408)
Q Consensus       166 L~~  168 (408)
                      .+.
T Consensus       406 ~~~  408 (451)
T PF03961_consen  406 ERS  408 (451)
T ss_pred             Hhh
Confidence            655

The proteins are in the region of 500-600 amino acid residues in length.

>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking

Probab=82.84  E-value=13  Score=32.68  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=27.6

Q ss_pred             ccHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhcC
Q 015366           85 PSAFLQQTVA----------RFEKYLGEFRQWIEELEQLILLD  117 (408)
Q Consensus        85 PSpFF~elV~----------~FEerL~~yRQqIEELEr~L~s~  117 (408)
                      |..|-.+++.          +.+..+......|+|++++|...
T Consensus        10 ~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~   52 (132)
T PF10392_consen   10 PVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQ   52 (132)
T ss_pred             HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777777          78999999999999999999644

Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].

>PRK04406 hypothetical protein; Provisional

Probab=82.39  E-value=3.6  Score=33.72  Aligned_cols=54  Identities=13%  Similarity=0.289  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366           98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVET  160 (408)
Q Consensus        98 erL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~  160 (408)
                      +.+....+.|++||-.+....         ...++|..+|-.+++-.-.|-.++..|.+++++
T Consensus         4 ~~~~~le~Ri~~LE~~lAfQE---------~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~   57 (75)
T PRK04406          4 KTIEQLEERINDLECQLAFQE---------QTIEELNDALSQQQLLITKMQDQMKYVVGKVKN   57 (75)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444556667777665442         235666777777777666666666666666554

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=82.32  E-value=1.1e+02  Score=35.80  Aligned_cols=29  Identities=21%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHhhhhcc
Q 015366            5 KAQLQERMAVVKDMLRNTEIAVRSFMMLR   33 (408)
Q Consensus         5 k~~lqeL~~~V~~mlrntE~AvRsf~~lR   33 (408)
                      .+-+.|||.+..+.=-+-+.|-..|.+|-
T Consensus       364 e~Dl~el~~rledir~emDd~~~~f~lL~  392 (1102)
T KOG1924|consen  364 EDDLEELSGRLEDIRAEMDDANEVFELLA  392 (1102)
T ss_pred             hhhHHHHHhHHHhhhhhhccHHHHHHHHH
Confidence            36788888776666666666777777664

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.65  E-value=3.7  Score=40.98  Aligned_cols=61  Identities=20%  Similarity=0.177  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366           99 YLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD  168 (408)
Q Consensus        99 rL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~  168 (408)
                      .+++..++|++||+-+.-..+         ..+||...++.+.+..=.+.+.|+..|+.|+..++.--..
T Consensus       174 ~ieeR~q~I~~lE~dI~dvN~---------IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA  234 (269)
T KOG0811|consen  174 LIEEREQAIEQLEADIIDVNE---------IFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKA  234 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445588899999999965432         4899999999999999999999999999999887654433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	408
3t98_B	93	Nucleoporin NUP58/NUP45; NUP62 complex, nuclear im	2e-12
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-04

>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A Length = 93

 Score = 61.9 bits (150), Expect = 2e-12
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 80  GLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISN 139
           G    P+ + +  V +FE  L ++RQ IEELE  +    + +  +      Q L   +  
Sbjct: 1   GSHMAPADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHIT-----PQDLSMAMQK 55

Query: 140 VHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGS 176
           ++  FV +AA+ +SIH+ V+ +K  YL+ ++     +
Sbjct: 56  IYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGDA 92

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 209  PSAQVGGSLTNTATGALVAPQTSAVISASSGGGLSLFSTPSS------APASSMSSSLFA 262
            P  Q G           +    S      S G  S FS+  S      +P+ S SS  ++
Sbjct: 1507 PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYS 1566

Query: 263  TPATSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFS 315
            T + +  PSS   S  SP  S +S   + T   +  T PS+ S TS   S  S
Sbjct: 1567 T-SPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SATSPSYSPTS 1617

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
3t98_B	93	Nucleoporin NUP58/NUP45; NUP62 complex, nuclear im	99.94
3uul_A	118	Utrophin; spectrin repeat, structural protein, cyt	82.4
3fav_B	94	ESAT-6, 6 kDa early secretory antigenic target; co	81.12

>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A

Probab=99.94  E-value=3.6e-27  Score=195.29  Aligned_cols=88  Identities=32%  Similarity=0.483  Sum_probs=78.7

Q ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366           83 KKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK  162 (408)
Q Consensus        83 ~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lK  162 (408)
                      ..|++||+++|++||+||++||+||||||+||.+.+.  +++.   +||+|+.+|+++|++||+||+||+.||++|+.+|
T Consensus         4 ~~P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~--~~~~---Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~K   78 (93)
T 3t98_B            4 MAPADYFRVLVQQFEVQLQQYRQQIEELENHLATQAN--NSHI---TPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLK   78 (93)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--HTTS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999987642  4444   4999999999999999999999999999999999


Q ss_pred             HHHHHHHhh-cCCC
Q 015366          163 TAYLADQRR-RGDG  175 (408)
Q Consensus       163 E~YL~~rRr-~GD~  175 (408)
                      ++||++||+ +||.
T Consensus        79 e~Yl~~rr~~~~d~   92 (93)
T 3t98_B           79 EQYLSYRKMFLGDA   92 (93)
T ss_dssp             HHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHhccC
Confidence            999999995 8875

>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A

Probab=82.40  E-value=11  Score=29.18  Aligned_cols=25  Identities=16%  Similarity=0.300  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366           93 VARFEKYLGEFRQWIEELEQLILLD  117 (408)
Q Consensus        93 V~~FEerL~~yRQqIEELEr~L~s~  117 (408)
                      +.+|+..|..+..||.+.|..|...
T Consensus         4 L~~f~~~l~el~~WL~e~e~~l~~~   28 (118)
T 3uul_A            4 LDSYQIALEEVLTWLLSAEDTFQEQ   28 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999754

>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B

Probab=81.12  E-value=8.8  Score=29.29  Aligned_cols=78  Identities=6%  Similarity=0.032  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366           89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD  168 (408)
Q Consensus        89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~  168 (408)
                      +...+.++.....+++..+++|+..+......=. +   .+-+.-...+.+.++.+..|-.-|+.|.+.|.+..+.|-+.
T Consensus        10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~-G---~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~y~~~   85 (94)
T 3fav_B           10 IEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWG-G---SGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMAST   85 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGT-C---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999966542111 1   23466677888888888888888888888888888877665


Q ss_pred             Hh
Q 015366          169 QR  170 (408)
Q Consensus       169 rR  170 (408)
                      -+
T Consensus        86 d~   87 (94)
T 3fav_B           86 EG   87 (94)
T ss_dssp             --
T ss_pred             HH
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d1s35a2	105	Spectrin beta chain {Human (Homo sapiens) [TaxId:	89.68
d1quua2	124	alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}	88.81
d1quua1	124	alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}	86.93
d1s35a1	106	Spectrin beta chain {Human (Homo sapiens) [TaxId:	84.15
d1u5pa1	110	Spectrin alpha chain {Chicken (Gallus gallus) [Tax	82.43

>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=1.6  Score=31.98  Aligned_cols=25  Identities=12%  Similarity=0.049  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366           93 VARFEKYLGEFRQWIEELEQLILLD  117 (408)
Q Consensus        93 V~~FEerL~~yRQqIEELEr~L~s~  117 (408)
                      ..+|..++.....||.+.|..|...
T Consensus         2 ~q~F~~d~~~~~~Wi~~~e~~l~~~   26 (105)
T d1s35a2           2 FQEFQKDAKQAEAILSNQEYTLAHL   26 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4678999999999999999998644

>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.81  E-value=2.6  Score=31.76  Aligned_cols=71  Identities=13%  Similarity=0.122  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366           89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD  168 (408)
Q Consensus        89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~  168 (408)
                      ..++..+|.+.+..+..||++.|..|....  .+.     .+.++. .+.+-|+.|.   ..|..-..+|+.+.+..-.+
T Consensus         3 ~~q~~~~F~~~a~~l~~Wl~~~e~~l~~~~--~g~-----dl~~v~-~ll~kh~~fe---~el~~~~~~v~~l~~~~~~L   71 (124)
T d1quua2           3 IDQLHLEFAKRAAPFNNWMEGAMEDLQDMF--IVH-----SIEEIQ-SLITAHEQFK---ATLPEADGERQSIMAIQNEV   71 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTTCCC--CCC-----STTTHH-HHHHHHHHHH---THHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cCC-----CHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999997432  222     245543 4444455554   23555555666666665555


Q ss_pred             Hh
Q 015366          169 QR  170 (408)
Q Consensus       169 rR  170 (408)
                      .+
T Consensus        72 ~~   73 (124)
T d1quua2          72 EK   73 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.93  E-value=0.78  Score=34.70  Aligned_cols=29  Identities=21%  Similarity=0.429  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366           89 LQQTVARFEKYLGEFRQWIEELEQLILLD  117 (408)
Q Consensus        89 F~elV~~FEerL~~yRQqIEELEr~L~s~  117 (408)
                      +.+++.+|+..+..+..||.+.|..|...
T Consensus        12 l~~~~q~F~~~~~~l~~Wl~~~e~~l~~~   40 (124)
T d1quua1          12 LEHLAEKFRQKASTHETWAYGKEQILLQK   40 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            45667899999999999999999998644

>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.15  E-value=5.7  Score=28.57  Aligned_cols=23  Identities=17%  Similarity=0.510  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC
Q 015366           95 RFEKYLGEFRQWIEELEQLILLD  117 (408)
Q Consensus        95 ~FEerL~~yRQqIEELEr~L~s~  117 (408)
                      +|...+..+..||+++|..|...
T Consensus         3 ~F~~~~~~l~~Wl~~~e~~l~~~   25 (106)
T d1s35a1           3 AFLQDLDDFQAWLSITQKAVASE   25 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCC
Confidence            68899999999999999998754

>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=82.43  E-value=7.1  Score=28.33  Aligned_cols=67  Identities=15%  Similarity=0.277  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366           93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR  170 (408)
Q Consensus        93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR  170 (408)
                      ..+|+..+..+..||++.|..+....  .+.     .+..+...+++ |+.|.   ..++..+++|+.+++.--.+-.
T Consensus         4 ~q~F~~~~~el~~Wl~e~e~~l~~~~--~g~-----d~~~~~~~~~~-h~~~~---~ei~~~~~~i~~l~~~~~~L~~   70 (110)
T d1u5pa1           4 QQNFNTGIKDFDFWLSEVEALLASED--YGK-----DLASVNNLLKK-HQLLE---ADISAHEDRLKDLNSQADSLMT   70 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCC--CCS-----SHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC--CCC-----CHHHHHHHHHH-HHHHH---HHHHHhhHHHHHHHHHHHHHHh
Confidence            47899999999999999999886432  121     13333333322 44443   5667777777777665544443