Citrus Sinensis ID: 015372
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 408 | ||||||
| 449468285 | 413 | PREDICTED: maltose excess protein 1, chl | 0.973 | 0.961 | 0.646 | 1e-145 | |
| 225454603 | 405 | PREDICTED: maltose excess protein 1, chl | 0.862 | 0.869 | 0.723 | 1e-139 | |
| 109895092 | 425 | maltose transporter [Malus x domestica] | 0.909 | 0.872 | 0.728 | 1e-139 | |
| 312282879 | 415 | unnamed protein product [Thellungiella h | 0.848 | 0.833 | 0.710 | 1e-138 | |
| 356543074 | 411 | PREDICTED: maltose excess protein 1, chl | 0.825 | 0.819 | 0.714 | 1e-135 | |
| 297811901 | 413 | root cap 1 [Arabidopsis lyrata subsp. ly | 0.995 | 0.983 | 0.617 | 1e-133 | |
| 6137140 | 415 | root cap 1 [Arabidopsis thaliana] gi|215 | 0.995 | 0.978 | 0.614 | 1e-133 | |
| 18418329 | 415 | Maltose excess protein 1 [Arabidopsis th | 0.919 | 0.903 | 0.649 | 1e-133 | |
| 357168381 | 408 | PREDICTED: maltose excess protein 1-like | 0.818 | 0.818 | 0.658 | 1e-130 | |
| 242077056 | 401 | hypothetical protein SORBIDRAFT_06g02755 | 0.936 | 0.952 | 0.610 | 1e-122 |
| >gi|449468285|ref|XP_004151852.1| PREDICTED: maltose excess protein 1, chloroplastic-like [Cucumis sativus] gi|449484009|ref|XP_004156757.1| PREDICTED: maltose excess protein 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 261/404 (64%), Positives = 314/404 (77%), Gaps = 7/404 (1%)
Query: 12 AAKPSKEPFYRYPDCLSTSQSLPLKSLSVNKPAGKLN--NVLFISHY-----TLATLHRR 64
A+ + P R P ++ S+PLK +S++ P N N + L +RR
Sbjct: 10 ASNGATPPLRRNPLGFYSAASIPLKPISLSLPLNNKNPHNCFCLKQVLPYSSRLNLPNRR 69
Query: 65 LSPVSAGDSDVPHPFHQESANFRSNKAFEEWNSLTAKFSGAANIPFMLLQLPQIILNARN 124
+PV+A DSD PH HQ S R +K FEEWNSLTAKFS AANIPFMLLQLPQIILNARN
Sbjct: 70 FTPVAAVDSDAPHSHHQGSETLRDSKRFEEWNSLTAKFSAAANIPFMLLQLPQIILNARN 129
Query: 125 LLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVG 184
LLAGN ALLAVPWLGMLTGLLGNL+LLSYF KKREKEA+V+QTLG V+TY+V +QL++
Sbjct: 130 LLAGNTTALLAVPWLGMLTGLLGNLALLSYFAKKREKEAMVIQTLGAVTTYIVFAQLSIA 189
Query: 185 EAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVP 244
AMP+P+F A S VVA+GL++NF+N+FN+L + +FWED ITVGG + LPQV+WSTFVP
Sbjct: 190 GAMPLPYFAATSAVVASGLLINFMNFFNILPIQILKFWEDFITVGGFSILPQVMWSTFVP 249
Query: 245 TIPNSILPGTIAFVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNF 304
IPNSILPG A V + V +AR GKL ++GVKFV A+SGWTATLLFMWMPVSQMWTN+
Sbjct: 250 FIPNSILPGATALVTALLAVALARAGKLPEKGVKFVGALSGWTATLLFMWMPVSQMWTNY 309
Query: 305 LNPDNIKGLSASSMLLAMIGNGLLIPRALFIRDFMWFTGSSWATLFYGYGNLVCLYCSNV 364
LNP+NIKGLSA +MLLA+IGNGL++PRALFIRDFMWF GS WA LFYGY N++CLYC N
Sbjct: 310 LNPENIKGLSALTMLLALIGNGLVLPRALFIRDFMWFLGSGWAILFYGYANILCLYCCNG 369
Query: 365 ISKEFFLAATAGLVSWIGIALWRDTIAYGFNSPLRSLKELVYGQ 408
+S+EFF+AATAGL SWIG WRD++ YGFNSPL SLKEL++G
Sbjct: 370 VSREFFIAATAGLFSWIGFFFWRDSVVYGFNSPLTSLKELLFGS 413
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454603|ref|XP_002265122.1| PREDICTED: maltose excess protein 1, chloroplastic [Vitis vinifera] gi|297737222|emb|CBI26423.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|109895092|gb|ABG47411.1| maltose transporter [Malus x domestica] | Back alignment and taxonomy information |
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| >gi|312282879|dbj|BAJ34305.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
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| >gi|356543074|ref|XP_003539988.1| PREDICTED: maltose excess protein 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297811901|ref|XP_002873834.1| root cap 1 [Arabidopsis lyrata subsp. lyrata] gi|297319671|gb|EFH50093.1| root cap 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|6137140|gb|AAF04351.1|AF168391_1 root cap 1 [Arabidopsis thaliana] gi|21536538|gb|AAM60870.1| root cap 1 (RCP1) [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|18418329|ref|NP_568349.1| Maltose excess protein 1 [Arabidopsis thaliana] gi|41688594|sp|Q9LF50.2|MEX1_ARATH RecName: Full=Maltose excess protein 1, chloroplastic; AltName: Full=Root cap protein 1; Flags: Precursor gi|6137138|gb|AAF04350.1|AF168390_1 root cap 1 [Arabidopsis thaliana] gi|15810297|gb|AAL07036.1| putative root cap protein RCP1 [Arabidopsis thaliana] gi|20466029|gb|AAM20349.1| putative root cap protein RCP1 [Arabidopsis thaliana] gi|332005053|gb|AED92436.1| Maltose excess protein 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|357168381|ref|XP_003581619.1| PREDICTED: maltose excess protein 1-like, chloroplastic-like [Brachypodium distachyon] | Back alignment and taxonomy information |
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| >gi|242077056|ref|XP_002448464.1| hypothetical protein SORBIDRAFT_06g027550 [Sorghum bicolor] gi|241939647|gb|EES12792.1| hypothetical protein SORBIDRAFT_06g027550 [Sorghum bicolor] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 408 | ||||||
| TAIR|locus:2157492 | 415 | RCP1 "ROOT CAP 1" [Arabidopsis | 0.928 | 0.913 | 0.580 | 1.6e-118 |
| TAIR|locus:2157492 RCP1 "ROOT CAP 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
Identities = 224/386 (58%), Positives = 275/386 (71%)
Query: 28 STSQSLPLKSLSVNKPAGKLNNVLFISHYTLATLHRRLSPV------SAGDSDVPHPFHQ 81
S SLPLK S+ A + V ++ + RRL PV S DSD PH Q
Sbjct: 30 SRLSSLPLKRASIGG-AVSCSGVNGLTRWNSIVSTRRLVPVRSINSESDSDSDFPHENQQ 88
Query: 82 ESANFRSNKAFEEWNSLTAKFSGAANIPFMLLQLPQIIXXXXXXXXXXXXXXXXVPWXXX 141
+ K ++EW+S TAKFSG ANIPF++LQLPQII VPW
Sbjct: 89 GNPGLGKFKEYQEWDSWTAKFSGGANIPFLMLQLPQIILNTQNLLAGNNTALSAVPWLGM 148
Query: 142 XXXXXXXXXXXSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVAT 201
SYF KKREKEA VVQTLGVVST++V++QL + EAMP+ +F+A S VV
Sbjct: 149 LTGLLGNLSLLSYFAKKREKEAAVVQTLGVVSTHIVLAQLTMAEAMPIQYFVATSAVVTI 208
Query: 202 GLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSILPGTIAFVVGV 261
GL++N L YF L+ +W+ WEDVIT+GGL+ LPQ++WSTFVP +PNSILPGT AF + V
Sbjct: 209 GLIVNCLYYFGKLSKTVWQLWEDVITIGGLSVLPQIMWSTFVPLVPNSILPGTTAFGIAV 268
Query: 262 ATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLA 321
A ++MAR GKLS++GV+FV ++SGWTATL+FMWMPVSQMWTNFLNPDNIKGLS+ +MLL+
Sbjct: 269 AAIIMARTGKLSEKGVRFVGSLSGWTATLMFMWMPVSQMWTNFLNPDNIKGLSSITMLLS 328
Query: 322 MIGNGLLIPRALFIRDFMWFTGSSWATLFYGYGNLVCLYCSNVISKEFFLAATAGLVSWI 381
M+GNGL+IPRALFIRD MW TGS WATLFYGYGN++CLY N S+ FF+AAT GL+SWI
Sbjct: 329 MMGNGLMIPRALFIRDLMWLTGSLWATLFYGYGNILCLYLVNCTSQSFFVAATIGLISWI 388
Query: 382 GIALWRDTIAYGFNSPLRSLKELVYG 407
G+ALWRD +AYG NSP RSLKELV+G
Sbjct: 389 GLALWRDAVAYGHNSPFRSLKELVFG 414
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.136 0.428 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 408 378 0.00089 117 3 11 22 0.46 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 627 (67 KB)
Total size of DFA: 257 KB (2134 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.42u 0.16s 28.58t Elapsed: 00:00:02
Total cpu time: 28.43u 0.16s 28.59t Elapsed: 00:00:02
Start: Fri May 10 21:21:09 2013 End: Fri May 10 21:21:11 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00013883001 | SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (405 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
| GSVIVG00019399001 | • | • | 0.410 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 408 | |||
| KOG2913 | 260 | consensus Predicted membrane protein [Function unk | 93.58 | |
| PF04193 | 61 | PQ-loop: PQ loop repeat | 89.65 |
| >KOG2913 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
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Probab=93.58 E-value=1.1 Score=43.86 Aligned_cols=213 Identities=23% Similarity=0.283 Sum_probs=114.8
Q ss_pred hhhHHhhhhcccchhhhhhhhhHHHHHHHHhhcCCcchhhhhchhHHHhhhhhhhhhHHHHhh-ccccceeEEeeeh-hh
Q 015372 95 WNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIK-KREKEAIVVQTLG-VV 172 (408)
Q Consensus 95 Wds~T~~l~~~a~iPFL~LqlPQIi~Na~nl~aGn~~AL~av~W~g~ltGLLGNLsLLSYFA~-KrE~~A~vVQ~vG-Vv 172 (408)
|+.+---++..+++=-.....|||++|++.=.+.--..++.+.|+. |...-+.|+-- ..+- ...+|++= .+
T Consensus 5 ~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wli------gdi~nl~g~~l~~~~~-~~~~~~~yy~~ 77 (260)
T KOG2913|consen 5 NDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLI------GDIFNLVGFFLQPLGS-TLKVQAVYYTL 77 (260)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHH------ccHHHHHHHHhcccch-hHHHHHHHHHH
Confidence 3444444444455445567789999999999999899999999973 33333333321 1111 12222221 12
Q ss_pred hhHHHHHHHHhhCCC-C-hhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhhhhhhHHHHhhhccCCCCCC
Q 015372 173 STYVVISQLAVGEAM-P-MPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSI 250 (408)
Q Consensus 173 St~iVL~QLa~Ag~M-P-l~~F~~ts~~Va~GlvLn~l~y~g~l~~~lW~lWe~~i~igGlavlPQVmwsTf~P~iP~si 250 (408)
+..++++|..--+.. | -|.+...+ ...-.+|.-+++|---.-|-|. .+-
T Consensus 78 ~d~~l~~q~~yy~~~~~~~pll~~~s---------------------------~~s~~~~~~~~~~~~~~~~~~~--~~~ 128 (260)
T KOG2913|consen 78 ADSVLFVQCLYYGNIYPREPLLPVPS---------------------------FRSLLGGLEALLILSIKLFSPR--FVK 128 (260)
T ss_pred HHHHHHHHHHhcchhcccCccccccc---------------------------hhhhhcchHHHHHHHhhccCcc--hhh
Confidence 223333444332222 1 11111000 0001122334444333333332 233
Q ss_pred chhHH-HHHHHHHHHHHHHhcCCchhH------hhHHhhcchhhHHHHHHHhhHHHHHhhcCCCCCccchhHHHHHHHHH
Q 015372 251 LPGTI-AFVVGVATVVMARMGKLSKQG------VKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMI 323 (408)
Q Consensus 251 LPg~i-~~~~~~~~Vvmar~gkL~~k~------~~f~~~lSgWTATLLFMwmPVaQmwtN~lnP~nl~GLS~~T~LLAmi 323 (408)
.|-.. ++...+.....+...+++.+. ..-.+...||...++.|+.+++|+.-|+. =.+-+|+|.+--+++++
T Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~-~~s~eGls~~~F~~~~~ 207 (260)
T KOG2913|consen 129 WPVVALGFLAIVFLICGAAYESLLRAVRVNGLEIDSLGAILGSLSALLYLGARIPQIILNHL-RKSTEGLSLLAFAFNSL 207 (260)
T ss_pred ccchhhhhHHHHHHHHHHHhhccccccccchhhhcchHHHHHHHHHHHHcccccchhhhhhc-cCccchhHHHHHHHHHc
Confidence 33333 333333333343333333322 34578889999999999999999999984 57889999999999999
Q ss_pred hccccchhhhhhhhhhhhccc
Q 015372 324 GNGLLIPRALFIRDFMWFTGS 344 (408)
Q Consensus 324 GNgLMlPRALFiRD~mW~tGS 344 (408)
||.--++-.--.+..=|.-|+
T Consensus 208 ~n~~y~~s~~~~~n~~w~~~~ 228 (260)
T KOG2913|consen 208 GNTTYILSSYLVTNLPWLVDS 228 (260)
T ss_pred cccccccccccccCCcccccC
Confidence 998866653333334444433
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| >PF04193 PQ-loop: PQ loop repeat | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00