Citrus Sinensis ID: 015372


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MAAKAFVVHFSAAKPSKEPFYRYPDCLSTSQSLPLKSLSVNKPAGKLNNVLFISHYTLATLHRRLSPVSAGDSDVPHPFHQESANFRSNKAFEEWNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSILPGTIAFVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIPRALFIRDFMWFTGSSWATLFYGYGNLVCLYCSNVISKEFFLAATAGLVSWIGIALWRDTIAYGFNSPLRSLKELVYGQ
ccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHcccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcc
cccEEEEEEEccccccccccEcccccccccccccccEccccccccccccccccccccccHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccc
MAAKAFVVHfsaakpskepfyrypdclstsqslplkslsvnkpagklnnvLFISHYTLATLHrrlspvsagdsdvphpfhqesanfrsnkAFEEWNSLTakfsgaanipfmllQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLavgeampmpHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVitvggltalpqviwstfvptipnsilpgtIAFVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMwtnflnpdnikglSASSMLLAMIGNGLLIPRALFIRdfmwftgssWATLFYGYGNLVCLYCSNVISKEFFLAATAGLVSWIGIALWRDTiaygfnsplrslkelvygq
MAAKAFVVhfsaakpskepfyRYPDCLSTSQSLPLKSLSVNKPAGKLNNVLFISHYTLATLHRRLSPVSAGDSDVPHPFHQESANFRSNKAFEEWNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSILPGTIAFVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIPRALFIRDFMWFTGSSWATLFYGYGNLVCLYCSNVISKEFFLAATAGLVSWIGIALWRDTIAYgfnsplrslkelvygq
MAAKAFVVHFSAAKPSKEPFYRYPDCLSTSQSLPLKSLSVNKPAGKLNNVLFISHYTLATLHRRLSPVSAGDSDVPHPFHQESANFRSNKAFEEWNSLTAKFSGAANIPFMLLQLPQIIlnarnllagnkaallaVPWlgmltgllgnlsllSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSILPGTIAFVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIPRALFIRDFMWFTGSSWATLFYGYGNLVCLYCSNVISKEFFLAATAGLVSWIGIALWRDTIAYGFNSPLRSLKELVYGQ
*****FVVHF*********FYRYPDCLS***********VNKPAGKLNNVLFISHYTLATLHRRL*************************AFEEWNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSILPGTIAFVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIPRALFIRDFMWFTGSSWATLFYGYGNLVCLYCSNVISKEFFLAATAGLVSWIGIALWRDTIAYGFNSPLRSLKEL****
****A****FSAAKPS**PFYR**DCLS*SQSLPLKSLSVNKPAGKLNNVLFISHYTLATLHRRL****************************EWNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSILPGTIAFVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIPRALFIRDFMWFTGSSWATLFYGYGNLVCLYCSNVISKEFFLAATAGLVSWIGIALWRDTIAYGFNSPLRSLKELVYGQ
MAAKAFVVHFSAAKPSKEPFYRYPDCLSTSQSLPLKSLSVNKPAGKLNNVLFISHYTLATLHRRLSPVSAGDSDVPHPFHQESANFRSNKAFEEWNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSILPGTIAFVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIPRALFIRDFMWFTGSSWATLFYGYGNLVCLYCSNVISKEFFLAATAGLVSWIGIALWRDTIAYGFNSPLRSLKELVYGQ
**AKAFVVHFSAAKPSKEPFYRYPDCLSTSQSLPLKSLSVNKPAGKLNNVLFISHYTLATLHRRLSPVSAGDSDVPHPFHQESANFRSNKAFEEWNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSILPGTIAFVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIPRALFIRDFMWFTGSSWATLFYGYGNLVCLYCSNVISKEFFLAATAGLVSWIGIALWRDTIAYGFNSPLRSLKELVYGQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
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MAAKAFVVHFSAAKPSKEPFYRYPDCLSTSQSLPLKSLSVNKPAGKLNNVLFISHYTLATLHRRLSPVSAGDSDVPHPFHQESANFRSNKAFEEWNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSILPGTIAFVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIPRALFIRDFMWFTGSSWATLFYGYGNLVCLYCSNVISKEFFLAATAGLVSWIGIALWRDTIAYGFNSPLRSLKELVYGQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query408 2.2.26 [Sep-21-2011]
Q9LF50415 Maltose excess protein 1, yes no 0.919 0.903 0.649 1e-135
Q7XTQ5399 Maltose excess protein 1- yes no 0.875 0.894 0.640 1e-121
>sp|Q9LF50|MEX1_ARATH Maltose excess protein 1, chloroplastic OS=Arabidopsis thaliana GN=MEX1 PE=1 SV=2 Back     alignment and function desciption
 Score =  481 bits (1238), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 248/382 (64%), Positives = 300/382 (78%), Gaps = 7/382 (1%)

Query: 32  SLPLKSLSVNKPAGKLNNVLFISHYTLATLHRRLSPV------SAGDSDVPHPFHQESAN 85
           SLPLK  S+   A   + V  ++ +      RRL PV      S  DSD PH   Q +  
Sbjct: 34  SLPLKRASIGG-AVSCSGVNGLTRWNSIVSTRRLVPVRSINSESDSDSDFPHENQQGNPG 92

Query: 86  FRSNKAFEEWNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGL 145
               K ++EW+S TAKFSG ANIPF++LQLPQIILN +NLLAGN  AL AVPWLGMLTGL
Sbjct: 93  LGKFKEYQEWDSWTAKFSGGANIPFLMLQLPQIILNTQNLLAGNNTALSAVPWLGMLTGL 152

Query: 146 LGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVL 205
           LGNLSLLSYF KKREKEA VVQTLGVVST++V++QL + EAMP+ +F+A S VV  GL++
Sbjct: 153 LGNLSLLSYFAKKREKEAAVVQTLGVVSTHIVLAQLTMAEAMPIQYFVATSAVVTIGLIV 212

Query: 206 NFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSILPGTIAFVVGVATVV 265
           N L YF  L+  +W+ WEDVIT+GGL+ LPQ++WSTFVP +PNSILPGT AF + VA ++
Sbjct: 213 NCLYYFGKLSKTVWQLWEDVITIGGLSVLPQIMWSTFVPLVPNSILPGTTAFGIAVAAII 272

Query: 266 MARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGN 325
           MAR GKLS++GV+FV ++SGWTATL+FMWMPVSQMWTNFLNPDNIKGLS+ +MLL+M+GN
Sbjct: 273 MARTGKLSEKGVRFVGSLSGWTATLMFMWMPVSQMWTNFLNPDNIKGLSSITMLLSMMGN 332

Query: 326 GLLIPRALFIRDFMWFTGSSWATLFYGYGNLVCLYCSNVISKEFFLAATAGLVSWIGIAL 385
           GL+IPRALFIRD MW TGS WATLFYGYGN++CLY  N  S+ FF+AAT GL+SWIG+AL
Sbjct: 333 GLMIPRALFIRDLMWLTGSLWATLFYGYGNILCLYLVNCTSQSFFVAATIGLISWIGLAL 392

Query: 386 WRDTIAYGFNSPLRSLKELVYG 407
           WRD +AYG NSP RSLKELV+G
Sbjct: 393 WRDAVAYGHNSPFRSLKELVFG 414




Probable maltose transporter. Essential for the conversion of starch to sucrose in leaves at night, probably via the export of maltose from the chloroplast. Required for root cap cells formation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7XTQ5|MEX1_ORYSJ Maltose excess protein 1-like, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0602400 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
449468285413 PREDICTED: maltose excess protein 1, chl 0.973 0.961 0.646 1e-145
225454603405 PREDICTED: maltose excess protein 1, chl 0.862 0.869 0.723 1e-139
109895092425 maltose transporter [Malus x domestica] 0.909 0.872 0.728 1e-139
312282879415 unnamed protein product [Thellungiella h 0.848 0.833 0.710 1e-138
356543074411 PREDICTED: maltose excess protein 1, chl 0.825 0.819 0.714 1e-135
297811901413 root cap 1 [Arabidopsis lyrata subsp. ly 0.995 0.983 0.617 1e-133
6137140415 root cap 1 [Arabidopsis thaliana] gi|215 0.995 0.978 0.614 1e-133
18418329415 Maltose excess protein 1 [Arabidopsis th 0.919 0.903 0.649 1e-133
357168381408 PREDICTED: maltose excess protein 1-like 0.818 0.818 0.658 1e-130
242077056401 hypothetical protein SORBIDRAFT_06g02755 0.936 0.952 0.610 1e-122
>gi|449468285|ref|XP_004151852.1| PREDICTED: maltose excess protein 1, chloroplastic-like [Cucumis sativus] gi|449484009|ref|XP_004156757.1| PREDICTED: maltose excess protein 1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 261/404 (64%), Positives = 314/404 (77%), Gaps = 7/404 (1%)

Query: 12  AAKPSKEPFYRYPDCLSTSQSLPLKSLSVNKPAGKLN--NVLFISHY-----TLATLHRR 64
           A+  +  P  R P    ++ S+PLK +S++ P    N  N   +         L   +RR
Sbjct: 10  ASNGATPPLRRNPLGFYSAASIPLKPISLSLPLNNKNPHNCFCLKQVLPYSSRLNLPNRR 69

Query: 65  LSPVSAGDSDVPHPFHQESANFRSNKAFEEWNSLTAKFSGAANIPFMLLQLPQIILNARN 124
            +PV+A DSD PH  HQ S   R +K FEEWNSLTAKFS AANIPFMLLQLPQIILNARN
Sbjct: 70  FTPVAAVDSDAPHSHHQGSETLRDSKRFEEWNSLTAKFSAAANIPFMLLQLPQIILNARN 129

Query: 125 LLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVG 184
           LLAGN  ALLAVPWLGMLTGLLGNL+LLSYF KKREKEA+V+QTLG V+TY+V +QL++ 
Sbjct: 130 LLAGNTTALLAVPWLGMLTGLLGNLALLSYFAKKREKEAMVIQTLGAVTTYIVFAQLSIA 189

Query: 185 EAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVP 244
            AMP+P+F A S VVA+GL++NF+N+FN+L   + +FWED ITVGG + LPQV+WSTFVP
Sbjct: 190 GAMPLPYFAATSAVVASGLLINFMNFFNILPIQILKFWEDFITVGGFSILPQVMWSTFVP 249

Query: 245 TIPNSILPGTIAFVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNF 304
            IPNSILPG  A V  +  V +AR GKL ++GVKFV A+SGWTATLLFMWMPVSQMWTN+
Sbjct: 250 FIPNSILPGATALVTALLAVALARAGKLPEKGVKFVGALSGWTATLLFMWMPVSQMWTNY 309

Query: 305 LNPDNIKGLSASSMLLAMIGNGLLIPRALFIRDFMWFTGSSWATLFYGYGNLVCLYCSNV 364
           LNP+NIKGLSA +MLLA+IGNGL++PRALFIRDFMWF GS WA LFYGY N++CLYC N 
Sbjct: 310 LNPENIKGLSALTMLLALIGNGLVLPRALFIRDFMWFLGSGWAILFYGYANILCLYCCNG 369

Query: 365 ISKEFFLAATAGLVSWIGIALWRDTIAYGFNSPLRSLKELVYGQ 408
           +S+EFF+AATAGL SWIG   WRD++ YGFNSPL SLKEL++G 
Sbjct: 370 VSREFFIAATAGLFSWIGFFFWRDSVVYGFNSPLTSLKELLFGS 413




Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454603|ref|XP_002265122.1| PREDICTED: maltose excess protein 1, chloroplastic [Vitis vinifera] gi|297737222|emb|CBI26423.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|109895092|gb|ABG47411.1| maltose transporter [Malus x domestica] Back     alignment and taxonomy information
>gi|312282879|dbj|BAJ34305.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|356543074|ref|XP_003539988.1| PREDICTED: maltose excess protein 1, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|297811901|ref|XP_002873834.1| root cap 1 [Arabidopsis lyrata subsp. lyrata] gi|297319671|gb|EFH50093.1| root cap 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|6137140|gb|AAF04351.1|AF168391_1 root cap 1 [Arabidopsis thaliana] gi|21536538|gb|AAM60870.1| root cap 1 (RCP1) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18418329|ref|NP_568349.1| Maltose excess protein 1 [Arabidopsis thaliana] gi|41688594|sp|Q9LF50.2|MEX1_ARATH RecName: Full=Maltose excess protein 1, chloroplastic; AltName: Full=Root cap protein 1; Flags: Precursor gi|6137138|gb|AAF04350.1|AF168390_1 root cap 1 [Arabidopsis thaliana] gi|15810297|gb|AAL07036.1| putative root cap protein RCP1 [Arabidopsis thaliana] gi|20466029|gb|AAM20349.1| putative root cap protein RCP1 [Arabidopsis thaliana] gi|332005053|gb|AED92436.1| Maltose excess protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357168381|ref|XP_003581619.1| PREDICTED: maltose excess protein 1-like, chloroplastic-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242077056|ref|XP_002448464.1| hypothetical protein SORBIDRAFT_06g027550 [Sorghum bicolor] gi|241939647|gb|EES12792.1| hypothetical protein SORBIDRAFT_06g027550 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
TAIR|locus:2157492415 RCP1 "ROOT CAP 1" [Arabidopsis 0.928 0.913 0.580 1.6e-118
TAIR|locus:2157492 RCP1 "ROOT CAP 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
 Identities = 224/386 (58%), Positives = 275/386 (71%)

Query:    28 STSQSLPLKSLSVNKPAGKLNNVLFISHYTLATLHRRLSPV------SAGDSDVPHPFHQ 81
             S   SLPLK  S+   A   + V  ++ +      RRL PV      S  DSD PH   Q
Sbjct:    30 SRLSSLPLKRASIGG-AVSCSGVNGLTRWNSIVSTRRLVPVRSINSESDSDSDFPHENQQ 88

Query:    82 ESANFRSNKAFEEWNSLTAKFSGAANIPFMLLQLPQIIXXXXXXXXXXXXXXXXVPWXXX 141
              +      K ++EW+S TAKFSG ANIPF++LQLPQII                VPW   
Sbjct:    89 GNPGLGKFKEYQEWDSWTAKFSGGANIPFLMLQLPQIILNTQNLLAGNNTALSAVPWLGM 148

Query:   142 XXXXXXXXXXXSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVAT 201
                        SYF KKREKEA VVQTLGVVST++V++QL + EAMP+ +F+A S VV  
Sbjct:   149 LTGLLGNLSLLSYFAKKREKEAAVVQTLGVVSTHIVLAQLTMAEAMPIQYFVATSAVVTI 208

Query:   202 GLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSILPGTIAFVVGV 261
             GL++N L YF  L+  +W+ WEDVIT+GGL+ LPQ++WSTFVP +PNSILPGT AF + V
Sbjct:   209 GLIVNCLYYFGKLSKTVWQLWEDVITIGGLSVLPQIMWSTFVPLVPNSILPGTTAFGIAV 268

Query:   262 ATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLA 321
             A ++MAR GKLS++GV+FV ++SGWTATL+FMWMPVSQMWTNFLNPDNIKGLS+ +MLL+
Sbjct:   269 AAIIMARTGKLSEKGVRFVGSLSGWTATLMFMWMPVSQMWTNFLNPDNIKGLSSITMLLS 328

Query:   322 MIGNGLLIPRALFIRDFMWFTGSSWATLFYGYGNLVCLYCSNVISKEFFLAATAGLVSWI 381
             M+GNGL+IPRALFIRD MW TGS WATLFYGYGN++CLY  N  S+ FF+AAT GL+SWI
Sbjct:   329 MMGNGLMIPRALFIRDLMWLTGSLWATLFYGYGNILCLYLVNCTSQSFFVAATIGLISWI 388

Query:   382 GIALWRDTIAYGFNSPLRSLKELVYG 407
             G+ALWRD +AYG NSP RSLKELV+G
Sbjct:   389 GLALWRDAVAYGHNSPFRSLKELVFG 414


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      408       378   0.00089  117 3  11 22  0.46    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  627 (67 KB)
  Total size of DFA:  257 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.42u 0.16s 28.58t   Elapsed:  00:00:02
  Total cpu time:  28.43u 0.16s 28.59t   Elapsed:  00:00:02
  Start:  Fri May 10 21:21:09 2013   End:  Fri May 10 21:21:11 2013


GO:0009507 "chloroplast" evidence=ISM
GO:0007154 "cell communication" evidence=IMP
GO:0007275 "multicellular organismal development" evidence=IMP
GO:0009629 "response to gravity" evidence=IMP
GO:0009706 "chloroplast inner membrane" evidence=IDA;TAS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA;IMP
GO:0005363 "maltose transmembrane transporter activity" evidence=IDA;TAS
GO:0005983 "starch catabolic process" evidence=IMP;TAS
GO:0009624 "response to nematode" evidence=IEP
GO:0005975 "carbohydrate metabolic process" evidence=IMP
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019760 "glucosinolate metabolic process" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XTQ5MEX1_ORYSJNo assigned EC number0.64020.8750.8947yesno
Q9LF50MEX1_ARATHNo assigned EC number0.64920.91910.9036yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00013883001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (405 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019399001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (585 aa)
      0.410

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 408
KOG2913260 consensus Predicted membrane protein [Function unk 93.58
PF0419361 PQ-loop: PQ loop repeat 89.65
>KOG2913 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
Probab=93.58  E-value=1.1  Score=43.86  Aligned_cols=213  Identities=23%  Similarity=0.283  Sum_probs=114.8

Q ss_pred             hhhHHhhhhcccchhhhhhhhhHHHHHHHHhhcCCcchhhhhchhHHHhhhhhhhhhHHHHhh-ccccceeEEeeeh-hh
Q 015372           95 WNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIK-KREKEAIVVQTLG-VV  172 (408)
Q Consensus        95 Wds~T~~l~~~a~iPFL~LqlPQIi~Na~nl~aGn~~AL~av~W~g~ltGLLGNLsLLSYFA~-KrE~~A~vVQ~vG-Vv  172 (408)
                      |+.+---++..+++=-.....|||++|++.=.+.--..++.+.|+.      |...-+.|+-- ..+- ...+|++= .+
T Consensus         5 ~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wli------gdi~nl~g~~l~~~~~-~~~~~~~yy~~   77 (260)
T KOG2913|consen    5 NDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLI------GDIFNLVGFFLQPLGS-TLKVQAVYYTL   77 (260)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHH------ccHHHHHHHHhcccch-hHHHHHHHHHH
Confidence            3444444444455445567789999999999999899999999973      33333333321 1111 12222221 12


Q ss_pred             hhHHHHHHHHhhCCC-C-hhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhhhhhhHHHHhhhccCCCCCC
Q 015372          173 STYVVISQLAVGEAM-P-MPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSI  250 (408)
Q Consensus       173 St~iVL~QLa~Ag~M-P-l~~F~~ts~~Va~GlvLn~l~y~g~l~~~lW~lWe~~i~igGlavlPQVmwsTf~P~iP~si  250 (408)
                      +..++++|..--+.. | -|.+...+                           ...-.+|.-+++|---.-|-|.  .+-
T Consensus        78 ~d~~l~~q~~yy~~~~~~~pll~~~s---------------------------~~s~~~~~~~~~~~~~~~~~~~--~~~  128 (260)
T KOG2913|consen   78 ADSVLFVQCLYYGNIYPREPLLPVPS---------------------------FRSLLGGLEALLILSIKLFSPR--FVK  128 (260)
T ss_pred             HHHHHHHHHHhcchhcccCccccccc---------------------------hhhhhcchHHHHHHHhhccCcc--hhh
Confidence            223333444332222 1 11111000                           0001122334444333333332  233


Q ss_pred             chhHH-HHHHHHHHHHHHHhcCCchhH------hhHHhhcchhhHHHHHHHhhHHHHHhhcCCCCCccchhHHHHHHHHH
Q 015372          251 LPGTI-AFVVGVATVVMARMGKLSKQG------VKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMI  323 (408)
Q Consensus       251 LPg~i-~~~~~~~~Vvmar~gkL~~k~------~~f~~~lSgWTATLLFMwmPVaQmwtN~lnP~nl~GLS~~T~LLAmi  323 (408)
                      .|-.. ++...+.....+...+++.+.      ..-.+...||...++.|+.+++|+.-|+. =.+-+|+|.+--+++++
T Consensus       129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~-~~s~eGls~~~F~~~~~  207 (260)
T KOG2913|consen  129 WPVVALGFLAIVFLICGAAYESLLRAVRVNGLEIDSLGAILGSLSALLYLGARIPQIILNHL-RKSTEGLSLLAFAFNSL  207 (260)
T ss_pred             ccchhhhhHHHHHHHHHHHhhccccccccchhhhcchHHHHHHHHHHHHcccccchhhhhhc-cCccchhHHHHHHHHHc
Confidence            33333 333333333343333333322      34578889999999999999999999984 57889999999999999


Q ss_pred             hccccchhhhhhhhhhhhccc
Q 015372          324 GNGLLIPRALFIRDFMWFTGS  344 (408)
Q Consensus       324 GNgLMlPRALFiRD~mW~tGS  344 (408)
                      ||.--++-.--.+..=|.-|+
T Consensus       208 ~n~~y~~s~~~~~n~~w~~~~  228 (260)
T KOG2913|consen  208 GNTTYILSSYLVTNLPWLVDS  228 (260)
T ss_pred             cccccccccccccCCcccccC
Confidence            998866653333334444433



>PF04193 PQ-loop: PQ loop repeat Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00