Citrus Sinensis ID: 015376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGSYRRNPDFSRQNRNGYRGRNRQNEERDSIDDESELLSSRNGPILSLSNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKRESESEPELETEPEASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEcccccccccccccccEEEEccEEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccHHHHHHHHHHccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccccccccccccccccccEEEEcccccccccccEEEEEEccEEEccccEEEEEEcccccccccccccHHccccccccccccccccccccccccHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccHHHHHHHHHHcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccEEccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccHHHccHHHHHHHHHHcccccccHccHHHHHHHHccccc
Coil and Loop (DISEMBL)
msqavhltaksppgygpsegrclpcmgvsgrAVAVSscssrgdfrilSQVKIGavkysskgasfacrassgsyrrnpdfsrqnrngyrgrnrqneerdsiddesellssrngpilslsnspkfqatstpgpreKEIVELFRKVQVQLRERAAARedkktesmqgqrkesETVDSLLKLLRKHSveqgkrksssgssndfsleqdepngshiedkstsffdsssrartesrepnvssftrpasnfrrrspvtqfkyqpvysseetensisrldssgkgkkssleihtdpkresesepeletepeasfadgevydeasdvesnvitdgslydevlenepniiddsvyrvseegessdndedenkqeeiengdlsalklPELRALAKSRGVKGFSKMKKAVLLELLAGSSV
Flexible Loop (DISEMBL)
msqavhltaksppgygpsEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIgavkysskgasfacrassgsyrrnpdfsrqnrngyrgrnrqneerdsiDDESELLSsrngpilslsnspkfqatstpgprekEIVELFRKVQVQLRERaaaredkktesmqgqrkesetvDSLLKLLRKhsveqgkrksssgssndfsleqdepngshiedkstsffdsssrartesrepnvssftrpasnfrrrspvtqfkyqpvysseetensisrldssgkgkkssleihtdpkresesepeletepeasfadgevYDEASDVESNVITdgslydevlenepniiddsvyrVSEEgessdndedenkqeeiengdlsalklpELRALAksrgvkgfskmKKAVLLellagssv
Low Complexity Region (SEG)
MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGSYRRNPDFSrqnrngyrgrnrqneerdsiddesellssrNGPILSLSNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDssgkgkkssLEIHTDPKResesepeletepeASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVseegessdndedenkqeeienGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV
Disordered region (IsUnstruct)
*********************CLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK******************************************************************************LF*************************************************************************************************************************************************************************************VITDGSLYDEVLE***NII********************************************************AVLL********
Disordered Region (DISOPRED)
******L*AKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASF*************************************************************************************************************************************************************************************************************************************************************************************************************************ELRALAKSRGVKGFSKMKKAVLLELLAG***
Disordered Region (DISEMBL)
**********SPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGSYRRNPDFSRQNRNGYRGR*****************SSRNGPILSLSNSP**********REKEIVELFRKVQVQLRE**********************VDSLLKLLRK****************************HIEDKSTSF*********************PASNFRRRSPVTQFKYQP***********************************************SFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRV******************IENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV
Disordered Region (DISPRO)
*SQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRAS************************************************************GPREKEIVELFRKVQVQLRERAAA*******************DS*****RKH**********************************************************************FK*********************************************************************************************************************SALKLPELRALAKSRGVKGFSKMKKAVLLELLAGS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGSYRRNPDFSRQNRNGYRGRNRQNEERDSIDDESELLSSRNGPILSLSNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKRESESEPELETEPEASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q94K75	401	Rho-N domain-containing p	yes	no	0.943	0.960	0.476	1e-70
Q8L4E7	375	SAP-like protein BP-73 OS	yes	no	0.875	0.952	0.370	9e-45

>sp|Q94K75|RHON1_ARATH Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=RHON1 PE=1 SV=1

 Score =  267 bits (682), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 200/420 (47%), Positives = 254/420 (60%), Gaps = 35/420 (8%)

Query: 1   MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK 60
           MS   HLT+   PGY  S+ RC     VS R +A+  CSS  D       K G +K    
Sbjct: 3   MSGTFHLTSDYVPGYTLSDSRCFFNSAVSRRTLAILPCSSCLDH------KNGRLKSVPN 56

Query: 61  GASFACRASSGSYRRNPDFSRQNRNGYRGRNRQNEERDSIDDE-SELLSSRNGPILSLSN 119
            +SF CRASSG YRRNPDFSR N++GYRG NRQ+  R+  D E S++LSSRNGP+ +LS+
Sbjct: 57  RSSFVCRASSGGYRRNPDFSRLNKHGYRGNNRQSGGREDFDIENSDMLSSRNGPLFNLSS 116

Query: 120 SPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESM--QGQRKESETVDSLLK 177
           SPKFQATS+PGPREKEIVELFRKVQ QLR RAAA++++K      +GQ KESETVDSLLK
Sbjct: 117 SPKFQATSSPGPREKEIVELFRKVQAQLRARAAAKKEEKKIEEASKGQGKESETVDSLLK 176

Query: 178 LLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHI--EDKSTSFFDSSSRARTESREPNVS 235
           LLRKHS EQ KR+ S  SS      Q E  G  +  +D++ +   S       +++ N S
Sbjct: 177 LLRKHSGEQSKRQVSKFSS------QGEVQGDTVDKQDRTGNLVTSG------NKDNNAS 224

Query: 236 SFTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKR----E 291
           SFTRP S+FRR+SPV + +  P YSSE T +  S    +   KK ++E+H +P+     E
Sbjct: 225 SFTRPTSSFRRKSPVPRSQSPPAYSSEATFDQSSSYSVTWTQKKDTVELHDEPEHEPAYE 284

Query: 292 SESEPELETEPEASFA----DGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRV 347
            E EPE E+EP         D E+  E+S        D   +D VL  +  I+D      
Sbjct: 285 HEHEPENESEPGPVTTMLEPDSELKPESSSFYQEEEDDDVTFD-VLSQDDGILD---VLS 340

Query: 348 SEEGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSS 407
            ++    D DED ++ EE    DLS LKL ELR +AKSRG+KG SKMKKA L+ELL   S
Sbjct: 341 DDDESLDDADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGSDS 400

Binds to and supports processing of specific plastid RNAs. Associates via its C-terminal Rho-N domain to single stranded regions of 16S and 23S rRNAs or to rbcL mRNAs. May be involved in targeting transcripts to RNases such as RNE or RNase J.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4E7|BP73_ORYSJ SAP-like protein BP-73 OS=Oryza sativa subsp. japonica GN=BP-73 PE=1 SV=1

 Score =  181 bits (459), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 148/399 (37%), Positives = 223/399 (55%), Gaps = 42/399 (10%)

Query: 17  PSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGSYR-R 75
           P  GR LP      R +  +   S+    +L  +K+          S  C A+  ++R R
Sbjct: 5   PHPGRTLPAYHGDNRFLLGACFLSK--LPMLRPMKL----------SLVCSANPNNHRSR 52

Query: 76  NPDFSRQNRNG-YRGRNRQNEERD---SIDD-ESELLSSRNGPILSLSNSPKFQATSTPG 130
           + D +R  + G  R +++  +E+D   +ID+ +++++SS+NGP +SL+++ + QATS PG
Sbjct: 53  SSDITRHQKGGSARRKSKPYQEKDDSENIDEFDTDIMSSKNGPPISLTSNSRPQATSVPG 112

Query: 131 PREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKRK 190
            REKEIVELF++VQ QLR R   +E+KK E  + Q  E  +VDSLL LLRKHSV+Q ++ 
Sbjct: 113 EREKEIVELFKRVQAQLRARGKGKEEKKPEQAKAQ-GERGSVDSLLNLLRKHSVDQRRK- 170

Query: 191 SSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSPV 250
             SG   + S++Q + +      +++S F  +   + E ++P+ ++F RPASNFRRRSPV
Sbjct: 171 --SGDEKEQSVDQTKRSNESGNKQNSSIFIKND-TQEEQKKPHPAAFKRPASNFRRRSPV 227

Query: 251 TQFKYQPVYSSEETENSISRLDSSGKGKKSSLE--IHTD-PKRESESEPELETEPEASFA 307
              K+QPV ++ + E  I+ ++ + +  K +LE    TD P   S  EP    EPE    
Sbjct: 228 PNVKFQPV-TNVDAERVINNINDAVQEAKPTLENKAATDEPDSVSTFEPNSVIEPENLSL 286

Query: 308 DGEVYDEASDVESNVITDGSLYDEVL--ENEPNIIDDSVYRVSEEGESSDNDEDENKQEE 365
           D    D  SD E     D S  DE     +EP++   SV  +       D   D   +  
Sbjct: 287 DD--LDHISDDE----PDASDTDEPSGEYDEPSLQIPSVPII-------DESHDTTLKSS 333

Query: 366 IENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 404
           +   DLS LK+ ELR LAKSRG+KG+SKMKK  L+ELL+
Sbjct: 334 LGGPDLSTLKVTELRELAKSRGIKGYSKMKKNDLVELLS 372

May regulate cell proliferation and plant growth.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
224066243	389	predicted protein [Populus trichocarpa]	0.909	0.953	0.575	1e-118
255582495	385	conserved hypothetical protein [Ricinus	0.921	0.976	0.563	1e-114
297744156	351	unnamed protein product [Vitis vinifera]	0.852	0.991	0.566	1e-107
225438113	377	PREDICTED: SAP-like protein BP-73-like [	0.901	0.976	0.580	1e-106
449468554	410	PREDICTED: SAP-like protein BP-73-like i	0.921	0.917	0.485	2e-88
449468556	405	PREDICTED: SAP-like protein BP-73-like i	0.909	0.916	0.478	3e-85
224082822	389	predicted protein [Populus trichocarpa]	0.875	0.917	0.463	5e-84
356537005	374	PREDICTED: SAP-like protein BP-73-like [	0.897	0.978	0.451	2e-78
449525124	330	PREDICTED: SAP-like protein BP-73-like,	0.732	0.906	0.516	7e-76
8844124	399	Contains a weak similarity to an unknown	0.943	0.964	0.476	7e-69

>gi|224066243|ref|XP_002302043.1| predicted protein [Populus trichocarpa] gi|222843769|gb|EEE81316.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/426 (57%), Positives = 299/426 (70%), Gaps = 55/426 (12%)

Query: 1   MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK 60
           MSQAVHL  K+ PGYG SEGRCLPC G+SGRAVAVS CSSRG   + SQ + G +K SS+
Sbjct: 1   MSQAVHLVTKNLPGYGSSEGRCLPCSGISGRAVAVSPCSSRGVHYVHSQAQFGKMKCSSR 60

Query: 61  GASFACRASSGSYRRNPDFSRQNRNGY-RGRNRQNEERDSID--DESELLSSRNGPILSL 117
            +S  C+ SSG +RRNPDFSRQN+ G+ R RNRQNEE +  +  DES+LL+S+NGP+LSL
Sbjct: 61  ASSIVCK-SSGGHRRNPDFSRQNKQGFSRNRNRQNEEGNGFENLDESDLLTSKNGPLLSL 119

Query: 118 SNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLK 177
           S +PKFQAT+ PGPREKEIVELFRKVQ QLRERAA +E+KK E+ QG+ +E+ETVDSLLK
Sbjct: 120 SGTPKFQATAAPGPREKEIVELFRKVQAQLRERAAVKEEKKVEASQGKGRENETVDSLLK 179

Query: 178 LLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSF 237
           LLRKHSVEQGK+K+S+ SS D SL+Q E NG++ + K TSFFDSS + R +  EP ++SF
Sbjct: 180 LLRKHSVEQGKKKTSNISSGDLSLDQPE-NGTYKKAKGTSFFDSSKKERNDVLEP-ITSF 237

Query: 238 TRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKRESESEPE 297
           TRP SNFRR+SPV Q K+QP+YSSE+  NS S L+ +G+ KK   EI  D  +E E +PE
Sbjct: 238 TRPPSNFRRKSPVPQVKFQPIYSSEDPVNSTSHLNLNGE-KKQQFEILPDTTQELELDPE 296

Query: 298 LETEPE------------ASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVY 345
           L+ E E             SFA G+V+DE S                             
Sbjct: 297 LDAEEEHELDSEPEPEPEPSFAGGDVFDELS----------------------------- 327

Query: 346 RVSEEGESSDNDE---DENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLEL 402
               EGESSD D    D  KQ+ IE+ DLS+LKLPELRALAKSRGVKGFSKMKK  L+EL
Sbjct: 328 ----EGESSDMDNVDGDGEKQQLIEHEDLSSLKLPELRALAKSRGVKGFSKMKKGELVEL 383

Query: 403 LAGSSV 408
           L+GSS+
Sbjct: 384 LSGSSM 389

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582495|ref|XP_002532033.1| conserved hypothetical protein [Ricinus communis] gi|223528303|gb|EEF30349.1| conserved hypothetical protein [Ricinus communis]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/417 (56%), Positives = 294/417 (70%), Gaps = 41/417 (9%)

Query: 1   MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK 60
           MSQ+VHL + + PGYG SE RCLP  G+SG+AVA+  C S G+    SQ+K+G++K +S 
Sbjct: 1   MSQSVHLISNNIPGYGSSESRCLPSSGISGKAVAIPLCPSHGNHITYSQIKVGSIKCASG 60

Query: 61  GASFACRASSGSYRRNPDFSRQNRNGY-RGRNRQNEERDSID--DESELLSSRNGPILSL 117
            ASF CRASSG  RRN DFS+Q+R G+ R RNRQNEERDS +  D+S+LL+SR+GP+LSL
Sbjct: 61  AASFLCRASSGGPRRNSDFSKQSRQGFSRNRNRQNEERDSFENLDDSDLLTSRSGPLLSL 120

Query: 118 SNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLK 177
           SN+ KFQAT+ PGPREKEIVELFRKVQ QLRERAA +EDKK E+ +G+ KESETVDSLLK
Sbjct: 121 SNTSKFQATAGPGPREKEIVELFRKVQAQLRERAAVKEDKKVEASKGKVKESETVDSLLK 180

Query: 178 LLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSF 237
           LLRKHS+EQGK+K SS  + DF+++  E NGS   D+ST FF+ +++AR+E  E N +SF
Sbjct: 181 LLRKHSIEQGKKKVSSVGTGDFAVDSPEHNGSLSGDRSTGFFNPNNKARSEVPEHNSTSF 240

Query: 238 TRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTD----PKRESE 293
           +RP SNFRR+SPV Q KYQP+YS+E+  NS S  D +G  KK   E   D    PK E++
Sbjct: 241 SRPPSNFRRKSPVPQVKYQPIYSNEDPSNSTSYFDLTGD-KKKRFEALPDTAQQPKLETQ 299

Query: 294 SEPELET--EPEASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEG 351
            EPELE   EPE+SF DG   DE S+ ES+ I                            
Sbjct: 300 -EPELEVALEPESSFLDGNAVDELSEEESSDI---------------------------- 330

Query: 352 ESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV 408
              D +E  N+Q+E E+ DLS+LKLPELRALAKSRG+KGFSKMKK  L+ELL+G SV
Sbjct: 331 --DDINEFSNQQKENEHEDLSSLKLPELRALAKSRGLKGFSKMKKGDLVELLSGDSV 385

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744156|emb|CBI37126.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/411 (56%), Positives = 282/411 (68%), Gaps = 63/411 (15%)

Query: 1   MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK 60
           MS+A+HL A    GYGPS+GRCLPC GVS RAVA+S C+SR D++ LSQVKI  +K  S+
Sbjct: 1   MSRAIHLAA----GYGPSDGRCLPCSGVSRRAVALSPCTSRCDYKTLSQVKIVPLKCISR 56

Query: 61  GASFACRASSGSYRRNPDFSRQNRNGY-RGRNRQNEERDSIDDESE--LLSSRNGPILSL 117
           GASF C ASS   RRNPDFSRQ+R+G+ RGRNR NEE ++ ++  E   LSS+NGP+LSL
Sbjct: 57  GASFMCNASSSGNRRNPDFSRQSRHGFSRGRNRHNEENNNSENLEESEFLSSKNGPLLSL 116

Query: 118 SNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLK 177
           S SPKFQAT+TPGPREKEIVELFRKVQ QLR+RAA +E++K+E+ Q Q KESE VDSLLK
Sbjct: 117 SGSPKFQATATPGPREKEIVELFRKVQAQLRDRAAMKEERKSEASQRQAKESENVDSLLK 176

Query: 178 LLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSF 237
           LLRKHSVEQGKR+S   SS DF+L Q + NG   E+KSTSFFD SS  R E+REPN +SF
Sbjct: 177 LLRKHSVEQGKRRS---SSRDFNLSQPDQNGPFDEEKSTSFFDLSSSMRDEAREPN-ASF 232

Query: 238 TRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKRESESEPE 297
           TRPASNF+R+SPV + KY   Y   +T NS+S  +  GK KKS                 
Sbjct: 233 TRPASNFQRKSPVPRVKY---YPGRDTVNSVSYPNMGGKKKKSL---------------- 273

Query: 298 LETEPEASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGESSDND 357
               PE +F DG+V+DE SD ES   +D  +YD                          D
Sbjct: 274 ----PETTFPDGDVFDELSDAES---SDTEVYD--------------------------D 300

Query: 358 EDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV 408
           ED  +QE  ++ DLSALKLPELRALAKSRG+KGFSK+KK  L+ELL G S+
Sbjct: 301 EDAEEQESAQHRDLSALKLPELRALAKSRGMKGFSKLKKGELMELLIGRSI 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438113|ref|XP_002277984.1| PREDICTED: SAP-like protein BP-73-like [Vitis vinifera]

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 242/417 (58%), Positives = 295/417 (70%), Gaps = 49/417 (11%)

Query: 1   MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK 60
           MS+A+HL A    GYGPS+GRCLPC GVS RAVA+S C+SR D++ LSQVKI  +K  S+
Sbjct: 1   MSRAIHLAA----GYGPSDGRCLPCSGVSRRAVALSPCTSRCDYKTLSQVKIVPLKCISR 56

Query: 61  GASFACRASSGSYRRNPDFSRQNRNGY-RGRNRQNEERDSIDDESE--LLSSRNGPILSL 117
           GASF C ASS   RRNPDFSRQ+R+G+ RGRNR NEE ++ ++  E   LSS+NGP+LSL
Sbjct: 57  GASFMCNASSSGNRRNPDFSRQSRHGFSRGRNRHNEENNNSENLEESEFLSSKNGPLLSL 116

Query: 118 SNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLK 177
           S SPKFQAT+TPGPREKEIVELFRKVQ QLR+RAA +E++K+E+ Q Q KESE VDSLLK
Sbjct: 117 SGSPKFQATATPGPREKEIVELFRKVQAQLRDRAAMKEERKSEASQRQAKESENVDSLLK 176

Query: 178 LLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSF 237
           LLRKHSVEQGKR+S   SS DF+L Q + NG   E+KSTSFFD SS  R E+REPN +SF
Sbjct: 177 LLRKHSVEQGKRRS---SSRDFNLSQPDQNGPFDEEKSTSFFDLSSSMRDEAREPN-ASF 232

Query: 238 TRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTD------PKRE 291
           TRPASNF+R+SPV + KY   Y   +T NS+S  +  GK KKS +E ++       P+ E
Sbjct: 233 TRPASNFQRKSPVPRVKY---YPGRDTVNSVSYPNMGGKKKKSLVETYSQPEPEPEPEPE 289

Query: 292 SESEPELETEPEASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEG 351
            E EPE E EPE +F DG+V+DE SD ES   +D  +YD                     
Sbjct: 290 PEPEPEPELEPETTFPDGDVFDELSDAES---SDTEVYD--------------------- 325

Query: 352 ESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV 408
                DED  +QE  ++ DLSALKLPELRALAKSRG+KGFSK+KK  L+ELL G S+
Sbjct: 326 -----DEDAEEQESAQHRDLSALKLPELRALAKSRGMKGFSKLKKGELMELLIGRSI 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468554|ref|XP_004151986.1| PREDICTED: SAP-like protein BP-73-like isoform 1 [Cucumis sativus]

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 211/435 (48%), Positives = 274/435 (62%), Gaps = 59/435 (13%)

Query: 1   MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK 60
           MSQA+HL   +P G+G S+ RC+PC GVSGRA + S  S   + RI   VK   +  +S 
Sbjct: 1   MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60

Query: 61  GASFACRASSGSYRRNPDFSRQNRNGY-RGRNRQNEERDSID--DESELLSSRNGPILSL 117
           G SF C+ASSG +RRNPDF +QNR+G+ R RNRQNEER+S+D  DES+LL S+NGP+LS+
Sbjct: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120

Query: 118 SNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLK 177
           S++PK QAT+TPGPREKEIVELFRKVQ QLRERAA +E+KK E+ QGQ K SETVDSLLK
Sbjct: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEA-QGQTKGSETVDSLLK 179

Query: 178 LLRKHSVEQGKR--KSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVS 235
           LLRKHSVEQGKR       S+ D S    + NG + E + +SFF  S   R +++     
Sbjct: 180 LLRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQ----- 234

Query: 236 SFTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSG------------KGK----K 279
              RP SNF+RRSPV + KYQP+Y  E   NS + ++S G            KGK    +
Sbjct: 235 ---RPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQ 291

Query: 280 SSLEIHTD---PKRESESEP----ELETEPEASFADGEVYD---EASDVESNVITDGSLY 329
            S   H +    +RE+E EP    E E EPEA     E YD   E  ++E  ++    + 
Sbjct: 292 ESEREHWEELQSQREAEQEPEPDQEFELEPEA-----ETYDLEHEGDEMEPELVNLLGVS 346

Query: 330 DEVLENEPNIIDDSVYRVSEEGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVK 389
            +V        DD+      E +  DN+E   K  E E+ DL++LKL ELRA+AKSR ++
Sbjct: 347 SDV--------DDTF-----EDDVKDNEEFA-KHGEQEHEDLNSLKLAELRAIAKSRSLR 392

Query: 390 GFSKMKKAVLLELLA 404
           GFSKMKK+ L++LL+
Sbjct: 393 GFSKMKKSELVQLLS 407

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468556|ref|XP_004151987.1| PREDICTED: SAP-like protein BP-73-like isoform 2 [Cucumis sativus]

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 208/435 (47%), Positives = 271/435 (62%), Gaps = 64/435 (14%)

Query: 1   MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK 60
           MSQA+HL       + P++ RC+PC GVSGRA + S  S   + RI   VK   +  +S 
Sbjct: 1   MSQAIHLLP-----HNPTDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 55

Query: 61  GASFACRASSGSYRRNPDFSRQNRNGY-RGRNRQNEERDSID--DESELLSSRNGPILSL 117
           G SF C+ASSG +RRNPDF +QNR+G+ R RNRQNEER+S+D  DES+LL S+NGP+LS+
Sbjct: 56  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 115

Query: 118 SNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLK 177
           S++PK QAT+TPGPREKEIVELFRKVQ QLRERAA +E+KK E+ QGQ K SETVDSLLK
Sbjct: 116 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEA-QGQTKGSETVDSLLK 174

Query: 178 LLRKHSVEQGKR--KSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVS 235
           LLRKHSVEQGKR       S+ D S    + NG + E + +SFF  S   R +++     
Sbjct: 175 LLRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQ----- 229

Query: 236 SFTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSG------------KGK----K 279
              RP SNF+RRSPV + KYQP+Y  E   NS + ++S G            KGK    +
Sbjct: 230 ---RPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQ 286

Query: 280 SSLEIHTD---PKRESESEP----ELETEPEASFADGEVYD---EASDVESNVITDGSLY 329
            S   H +    +RE+E EP    E E EPEA     E YD   E  ++E  ++    + 
Sbjct: 287 ESEREHWEELQSQREAEQEPEPDQEFELEPEA-----ETYDLEHEGDEMEPELVNLLGVS 341

Query: 330 DEVLENEPNIIDDSVYRVSEEGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVK 389
            +V        DD+      E +  DN+E   K  E E+ DL++LKL ELRA+AKSR ++
Sbjct: 342 SDV--------DDTF-----EDDVKDNEEFA-KHGEQEHEDLNSLKLAELRAIAKSRSLR 387

Query: 390 GFSKMKKAVLLELLA 404
           GFSKMKK+ L++LL+
Sbjct: 388 GFSKMKKSELVQLLS 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082822|ref|XP_002306853.1| predicted protein [Populus trichocarpa] gi|222856302|gb|EEE93849.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (813), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 204/440 (46%), Positives = 266/440 (60%), Gaps = 83/440 (18%)

Query: 1   MSQAVHLTAKSPP--------------------GYGPSEGRCLPCMGVSGRAVAVSSCSS 40
           MSQA HL  K+                      GYG SEGRCL C G+ GRAV VS CSS
Sbjct: 1   MSQAAHLVTKNLAASSGTMPYLAQLQGLPRALQGYGSSEGRCLLCSGIYGRAVLVSPCSS 60

Query: 41  RGDFRILSQVKIGAVKYSSKGASFACRASSGSYRRNPDFSRQNRNGYRGRNRQNEERDSI 100
                  SQ + G +K S + +   C+ SSG +RRNPD SRQN+   R RNRQNE+R   
Sbjct: 61  HCVRYNHSQAQFGKMKCSFRASYIVCK-SSGGHRRNPDVSRQNKQVSRNRNRQNEKRSGF 119

Query: 101 D--DESELLSSRNGPILSLSNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKK 158
           +  DES+LL+S+NG +LS S +PKFQAT+ PGPRE                 AAA+EDKK
Sbjct: 120 ENLDESDLLTSKNGSLLSFSGTPKFQATAAPGPRE-----------------AAAKEDKK 162

Query: 159 TESMQGQRKESETVDSLLKLLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSF 218
            E+ QG+ +ESETVDSLLKLLR+HS EQGK+K+S+ SS +F+L+Q E NG++ + K TS 
Sbjct: 163 FEASQGKGRESETVDSLLKLLRQHSTEQGKKKTSNVSSGNFNLDQPE-NGAYKKAKGTSS 221

Query: 219 FDSSSRARTESREPNVSSFTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGK 278
           F+SS + R ++ EPN +SFT+P + FRR+SPV Q K+QP+YSSE+  NS S L+ +G+ K
Sbjct: 222 FNSSKKERNDALEPN-TSFTKPPAKFRRKSPVPQVKFQPIYSSEDLVNSTSHLNLNGE-K 279

Query: 279 KSSLEIHTDPKRESESEP----------ELETEPEASFADGEVYDEASDVESNVITDGSL 328
           ++  EI  D   E E +P          + E EPE++F  G+++DE S  ES+ I +   
Sbjct: 280 RNQFEILPDTTEELELDPEIKPEEEPELDSEQEPESAFPGGDMFDELSVGESSDIEN--- 336

Query: 329 YDEVLENEPNIIDDSVYRVSEEGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGV 388
                             V E GE         K ++IE   LS+LKLPELR LAKS+GV
Sbjct: 337 ------------------VDEGGE---------KHQQIEYEVLSSLKLPELRVLAKSQGV 369

Query: 389 KGFSKMKKAVLLELLAGSSV 408
           KGFSKMKK  L+ELL+GSSV
Sbjct: 370 KGFSKMKKGELVELLSGSSV 389

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537005|ref|XP_003537022.1| PREDICTED: SAP-like protein BP-73-like [Glycine max]

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 185/410 (45%), Positives = 249/410 (60%), Gaps = 44/410 (10%)

Query: 1   MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK 60
           MSQ +H       G G +EG+CLPC GVSGR  AV S SS G  RI S+V++  +K   +
Sbjct: 1   MSQTLHAFVAKNLGCGMAEGKCLPCSGVSGRTAAVYSYSSLGHHRIHSRVQVRGLKCGFR 60

Query: 61  GASFACRASSGSYRRNPDFSRQNRNGY-RGRNRQNEERDSIDD-ESELLSSRNGPILSLS 118
           GASF C A     +RNPDFSRQN++G  R RNR ++ RDS +  + ++ S +NGP +SLS
Sbjct: 61  GASFVCEA-----KRNPDFSRQNKHGSSRSRNRNSDGRDSFESFDDDMFSLKNGPPVSLS 115

Query: 119 NSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKL 178
            S KFQATS PGPREKEIVELFRKVQ +LRERAA++E+KK E+ + Q KE+ TVDSLLKL
Sbjct: 116 TSGKFQATSAPGPREKEIVELFRKVQARLRERAASKEEKKVEASRAQSKENSTVDSLLKL 175

Query: 179 LRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNV--SS 236
           L+KHSVEQ KR S  G   DFS +Q + +  +   ++    D  S  + E +E NV  SS
Sbjct: 176 LKKHSVEQVKRSSGGGRGKDFSSDQMQESNQYDGGRNAKISDLDSTPKDEPQEDNVFSSS 235

Query: 237 FTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKRESESEP 296
             RP SNF+RRSPV + KYQPV + E+  + +       +  +  +++  D + ES+SE 
Sbjct: 236 VARPRSNFQRRSPVPRVKYQPVSNDEDDTDVVPVGSEDTENNQDQIDLKLDDEAESDSES 295

Query: 297 ELETEPEASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGESSD- 355
           +++++ E  F                              PNI    +  +SE+ +S   
Sbjct: 296 DVDSKDELFF------------------------------PNI---GMAELSEDDDSEQT 322

Query: 356 -NDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 404
            NDE   +Q   ++ D SALKL ELRALAK+RG+KGFSKMKK+ L+ELL 
Sbjct: 323 YNDESVEEQPVAQHEDFSALKLSELRALAKTRGLKGFSKMKKSDLMELLT 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525124|ref|XP_004169569.1| PREDICTED: SAP-like protein BP-73-like, partial [Cucumis sativus]

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 176/341 (51%), Positives = 220/341 (64%), Gaps = 42/341 (12%)

Query: 1   MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK 60
           MSQA+HL   +P G+G S+ RC+PC GVSGRA + S  S   + RI   VK   +  +S 
Sbjct: 1   MSQAIHLLPHNPTGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSL 60

Query: 61  GASFACRASSGSYRRNPDFSRQNRNGY-RGRNRQNEERDSID--DESELLSSRNGPILSL 117
           G SF C+ASSG +RRNPDF +QNR+G+ R RNRQNEER+S+D  DES+LL S+NGP+LS+
Sbjct: 61  GESFTCKASSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSI 120

Query: 118 SNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLK 177
           S++PK QAT+TPGPREKEIVELFRKVQ QLRERAA +E+KK E+ QGQ K SETVDSLLK
Sbjct: 121 SSTPKSQATATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEA-QGQTKGSETVDSLLK 179

Query: 178 LLRKHSVEQGKR--KSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVS 235
           LLRKHSVEQGKR       S+ D S    + NG + E + +SFF  S   R +++     
Sbjct: 180 LLRKHSVEQGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQ----- 234

Query: 236 SFTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSG------------KGK----K 279
              RP SNF+RRSPV + KYQP+Y  E   NS + ++S G            KGK    +
Sbjct: 235 ---RPVSNFQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQ 291

Query: 280 SSLEIHTD---PKRESESEP----ELETEPEASFADGEVYD 313
            S   H +    +RE+E EP    E E EPEA     E YD
Sbjct: 292 ESEREHWEELQSQREAEQEPEPDQEFELEPEA-----ETYD 327

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8844124|gb|AAF80216.1|AC025290_5 Contains a weak similarity to an unknown protein T16B12.4 gi|3746061 from Arabidopsis thaliana BAC T16B12 gb|AC005311. ESTs gb|AI999279, gb|Z30507, gb|AI997722, gb|Z26742 come from this gene [Arabidopsis thaliana]

 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 200/420 (47%), Positives = 254/420 (60%), Gaps = 35/420 (8%)

Query: 1   MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK 60
           MS   HLT+   PGY  S+ RC     VS R +A+  CSS  D       K G +K    
Sbjct: 1   MSGTFHLTSDYVPGYTLSDSRCFFNSAVSRRTLAILPCSSCLDH------KNGRLKSVPN 54

Query: 61  GASFACRASSGSYRRNPDFSRQNRNGYRGRNRQNEERDSIDDE-SELLSSRNGPILSLSN 119
            +SF CRASSG YRRNPDFSR N++GYRG NRQ+  R+  D E S++LSSRNGP+ +LS+
Sbjct: 55  RSSFVCRASSGGYRRNPDFSRLNKHGYRGNNRQSGGREDFDIENSDMLSSRNGPLFNLSS 114

Query: 120 SPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESM--QGQRKESETVDSLLK 177
           SPKFQATS+PGPREKEIVELFRKVQ QLR RAAA++++K      +GQ KESETVDSLLK
Sbjct: 115 SPKFQATSSPGPREKEIVELFRKVQAQLRARAAAKKEEKKIEEASKGQGKESETVDSLLK 174

Query: 178 LLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHI--EDKSTSFFDSSSRARTESREPNVS 235
           LLRKHS EQ KR+ S  SS      Q E  G  +  +D++ +   S       +++ N S
Sbjct: 175 LLRKHSGEQSKRQVSKFSS------QGEVQGDTVDKQDRTGNLVTSG------NKDNNAS 222

Query: 236 SFTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKR----E 291
           SFTRP S+FRR+SPV + +  P YSSE T +  S    +   KK ++E+H +P+     E
Sbjct: 223 SFTRPTSSFRRKSPVPRSQSPPAYSSEATFDQSSSYSVTWTQKKDTVELHDEPEHEPAYE 282

Query: 292 SESEPELETEPEASFA----DGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRV 347
            E EPE E+EP         D E+  E+S        D   +D VL  +  I+D      
Sbjct: 283 HEHEPENESEPGPVTTMLEPDSELKPESSSFYQEEEDDDVTFD-VLSQDDGILD---VLS 338

Query: 348 SEEGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSS 407
            ++    D DED ++ EE    DLS LKL ELR +AKSRG+KG SKMKKA L+ELL   S
Sbjct: 339 DDDESLDDADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGSDS 398

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2038560	401	RHON1 "Rho-N 1" [Arabidopsis t	0.948	0.965	0.406	5.7e-59
TAIR|locus:2055846	309	AT2G31150 [Arabidopsis thalian	0.365	0.482	0.481	1.5e-26
TAIR|locus:2124127	245	AT4G18740 [Arabidopsis thalian	0.088	0.146	0.5	2.9e-05

TAIR|locus:2038560 RHON1 "Rho-N 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 170/418 (40%), Positives = 210/418 (50%)

Query:     1 MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK 60
             MS   HLT+   PGY  S+ RC     VS R +A+  CSS  D       K G +K    
Sbjct:     3 MSGTFHLTSDYVPGYTLSDSRCFFNSAVSRRTLAILPCSSCLDH------KNGRLKSVPN 56

Query:    61 GASFACRASSGSYRRNPDFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-NGPILSLSN 119
              +SF CRASSG YRRNPDFS                               NGP+ +LS+
Sbjct:    57 RSSFVCRASSGGYRRNPDFSRLNKHGYRGNNRQSGGREDFDIENSDMLSSRNGPLFNLSS 116

Query:   120 SPKFQATSTPGPREKEIVELFRKVQVQLRERAAAR-EDKKTE-SMQGQRKESETVDSLLK 177
             SPKFQATS+PGPREKEIVELFRKVQ QLR RAAA+ E+KK E + +GQ KESETVDSLLK
Sbjct:   117 SPKFQATSSPGPREKEIVELFRKVQAQLRARAAAKKEEKKIEEASKGQGKESETVDSLLK 176

Query:   178 LLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSF 237
             LLRKHS EQ KR+ S  SS      Q E  G  + DK      + +   + +++ N SSF
Sbjct:   177 LLRKHSGEQSKRQVSKFSS------QGEVQGDTV-DKQDR---TGNLVTSGNKDNNASSF 226

Query:   238 TRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDXXXXXXXXXLEIHTDPKRXXXXXXX 297
             TRP S+FRR+SPV + +  P YSSE T +  S            +E+H +P+        
Sbjct:   227 TRPTSSFRRKSPVPRSQSPPAYSSEATFDQSSSYSVTWTQKKDTVELHDEPEHEPAYEHE 286

Query:   298 XXXXXXASFA--------DGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVXX 349
                   +           D E+  E+S        D   +D VL  +  I+D        
Sbjct:   287 HEPENESEPGPVTTMLEPDSELKPESSSFYQEEEDDDVTFD-VLSQDDGILD---VLSDD 342

Query:   350 XXXXXXXXXXXXXXXXXXXGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSS 407
                                 DLS LKL ELR +AKSRG+KG SKMKKA L+ELL   S
Sbjct:   343 DESLDDADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGSDS 400

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IMP;IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010239 "chloroplast mRNA processing" evidence=IMP

GO:0019843 "rRNA binding" evidence=IDA

GO:0043621 "protein self-association" evidence=IPI

GO:1901259 "chloroplast rRNA processing" evidence=IMP

TAIR|locus:2055846 AT2G31150 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 77/160 (48%), Positives = 104/160 (65%)

Query:   133 EKEIVELFRKVQVQLRERAAAR-EDKKTE-SMQGQR-KESETVDSLLKLLRKHSVEQGKR 189
             EKEIVELF+KVQVQLR RAAA+ E+KKTE + +GQ  KESETVDSLLKLLRKHS EQ K+
Sbjct:    69 EKEIVELFKKVQVQLRARAAAKKEEKKTEEASKGQGGKESETVDSLLKLLRKHSGEQSKK 128

Query:   190 KSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSP 249
             + S+ +S    L++D+ + S  ++ S+S FDS       +++ N + FTRPAS+F+R SP
Sbjct:   129 QVSNFNSEK-QLQRDD-DASERQNHSSSRFDS------RNKDHNATPFTRPASSFKRNSP 180

Query:   250 VTQFKYQPVYSSEETENSISRLDXXXXXXXXXLEIHTDPK 289
             V + K Q  YSSE   +  S            +E   +P+
Sbjct:   181 VPRHKSQASYSSEAIFDEASSYSVTWTQKKDQVESRDEPE 220

GO:0005524 "ATP binding" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2124127 AT4G18740 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 18/36 (50%), Positives = 29/36 (80%)

Query:   371 LSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGS 406
             +  +KL EL+ +AK+RG+KG+SK++K+ LLEL+  S
Sbjct:   210 IETMKLAELKEVAKNRGIKGYSKLRKSELLELIRSS 245

GO:0005739 "mitochondrion" evidence=ISM

GO:0006353 "DNA-dependent transcription, termination" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94K75	RHON1_ARATH	No assigned EC number	0.4761	0.9436	0.9600	yes	no
Q8L4E7	BP73_ORYSJ	No assigned EC number	0.3709	0.875	0.952	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00020347 hypothetical protein (389 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
PRK12678	672	PRK12678, PRK12678, transcription termination fact	6e-06
smart00959	43	smart00959, Rho_N, Rho termination factor, N-termi	2e-05
pfam07498	43	pfam07498, Rho_N, Rho termination factor, N-termin	4e-05
PRK09376	416	PRK09376, rho, transcription termination factor Rh	0.004

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 369 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLE 401
           G L+ +KLPELRALAK  G+KG S M+K  L+ 
Sbjct: 21  GGLAGMKLPELRALAKQLGIKGTSGMRKGELIA 53

Length = 672

>gnl|CDD|198027 smart00959, Rho_N, Rho termination factor, N-terminal domain

 Score = 40.8 bits (97), Expect = 2e-05
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 370 DLSALKLPELRALAKSRGVKGFSKMKK 396
           +L    L EL  +AK  G++  S+++K
Sbjct: 1   ELKKKTLSELLEIAKELGIENASRLRK 27

The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain. Length = 43

>gnl|CDD|203652 pfam07498, Rho_N, Rho termination factor, N-terminal domain

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 370 DLSALKLPELRALAKSRGVKGFSKMKK 396
           +L    L ELR +AK  G++ +S+++K
Sbjct: 1   ELKEKTLAELREIAKELGIENYSRLRK 27

The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497). Length = 43

>gnl|CDD|236490 PRK09376, rho, transcription termination factor Rho; Provisional

 Score = 38.6 bits (91), Expect = 0.004
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 370 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELL 403
           +L    L EL  LA+  G++  S+++K  L+  +
Sbjct: 5   ELKNKSLSELLELAEELGIENASRLRKQELIFAI 38

Length = 416

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
PF07498	43	Rho_N: Rho termination factor, N-terminal domain;	98.8
PRK12678	672	transcription termination factor Rho; Provisional	98.37
PRK14537	230	50S ribosomal protein L20/unknown domain fusion pr	98.14
PF02037	35	SAP: SAP domain; InterPro: IPR003034 The SAP (afte	97.13
PF12949	35	HeH: HeH/LEM domain; PDB: 2OUT_A.	96.93
smart00513	35	SAP Putative DNA-binding (bihelical) motif predict	95.83
TIGR00578	584	ku70 ATP-dependent DNA helicase ii, 70 kDa subunit	93.87
PF10281	38	Ish1: Putative stress-responsive nuclear envelope	90.77

>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts

Probab=98.80  E-value=1.8e-09  Score=77.89  Aligned_cols=34  Identities=41%  Similarity=0.692  Sum_probs=29.5

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHh
Q 015376          371 LSALKLPELRALAKSRGVKGFSKMKKAVLLELLA  404 (408)
Q Consensus       371 Ls~MtvaELK~LAKe~GIKGySkMKKaELIeALq  404 (408)
                      |..|++.||++||+++||+||++|+|.|||.+|.
T Consensus         2 L~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il   35 (43)
T PF07498_consen    2 LKSMTLSELREIAKELGIEGYSKMRKQELIFAIL   35 (43)
T ss_dssp             HHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHH
Confidence            6789999999999999999999999999999984

It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....

>PRK12678 transcription termination factor Rho; Provisional

Probab=98.37  E-value=3.1e-07  Score=97.31  Aligned_cols=47  Identities=40%  Similarity=0.636  Sum_probs=41.1

Q ss_pred             chhhhhhccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcC
Q 015376          360 ENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGS  406 (408)
Q Consensus       360 ~~~~~~~~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~s  406 (408)
                      ...........|+.|+|+||++||+++||+|+++|+|.|||++|+..
T Consensus        12 ~~~~~~a~~~~LsamkL~ELr~lA~~lGI~Gts~mrK~eLI~AI~~~   58 (672)
T PRK12678         12 TDTAPRARGGGLAGMKLPELRALAKQLGIKGTSGMRKGELIAAIKEA   58 (672)
T ss_pred             cccCccccCCCcccCcHHHHHHHHHHcCCcccccccHHHHHHHHHHh
Confidence            33445556778999999999999999999999999999999999753

>PRK14537 50S ribosomal protein L20/unknown domain fusion protein; Provisional

Probab=98.14  E-value=1.2e-06  Score=83.49  Aligned_cols=38  Identities=37%  Similarity=0.531  Sum_probs=35.4

Q ss_pred             cCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          368 NGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       368 ~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      .-+|+.|.|.||++|||++.|.||++|+|+|||+||..
T Consensus       188 ~~~l~~m~~~elk~lak~~~i~~~~~~kk~e~i~al~~  225 (230)
T PRK14537        188 HIDLSKMLLKELKKLAKEHKIPNFNKLKKTEIIKALKK  225 (230)
T ss_pred             cccHHHhhHHHHHHHHHHhCCcchhhhhHHHHHHHHHH
Confidence            34699999999999999999999999999999999964

>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []

Probab=97.13  E-value=0.00058  Score=47.56  Aligned_cols=33  Identities=42%  Similarity=0.499  Sum_probs=28.3

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          371 LSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       371 Ls~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      |+.|+++|||++++++||+.-++  |.+||+.|.+
T Consensus         1 l~~l~v~eLk~~l~~~gL~~~G~--K~~Li~Rl~~   33 (35)
T PF02037_consen    1 LSKLTVAELKEELKERGLSTSGK--KAELIERLKE   33 (35)
T ss_dssp             TTTSHHHHHHHHHHHTTS-STSS--HHHHHHHHHH
T ss_pred             CCcCcHHHHHHHHHHCCCCCCCC--HHHHHHHHHH
Confidence            67899999999999999997544  9999999864

In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....

>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A

Probab=96.93  E-value=0.00069  Score=48.39  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=23.7

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          371 LSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       371 Ls~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      +..|||++||++-.++||.=-|+.+|+|||+++++
T Consensus         1 p~sltV~~Lk~iL~~~~I~~ps~AkKaeLv~L~~~   35 (35)
T PF12949_consen    1 PKSLTVAQLKRILDEHGIEFPSNAKKAELVALFNQ   35 (35)
T ss_dssp             STT--SHHHHHHHHHHT---SSS--SHHHHHH---
T ss_pred             CCcCcHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC
Confidence            46899999999999999999999999999999863

>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation

Probab=95.83  E-value=0.018  Score=39.75  Aligned_cols=33  Identities=36%  Similarity=0.447  Sum_probs=28.5

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          371 LSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       371 Ls~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      ++.|++++||++++++||.-  .=+|.|||+.|..
T Consensus         1 ~~~l~~~~Lk~~l~~~gl~~--~G~K~~Lv~Rl~~   33 (35)
T smart00513        1 LAKLKVSELKDELKKRGLST--SGTKAELVDRLLE   33 (35)
T ss_pred             CCcCcHHHHHHHHHHcCCCC--CCCHHHHHHHHHH
Confidence            46899999999999999995  3379999998864

>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70)

Probab=93.87  E-value=0.058  Score=56.77  Aligned_cols=38  Identities=26%  Similarity=0.469  Sum_probs=33.6

Q ss_pred             hccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          366 IENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       366 ~~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      .+++.|..|||++||++++.+||++  .-||+|||+.|..
T Consensus       544 ~~~~~l~kltv~~Lk~~l~~~g~~~--~~kKadLi~~i~~  581 (584)
T TIGR00578       544 AKKGTLGKLTVSVLKDFCRAYGLRS--GSKKQELLDALTK  581 (584)
T ss_pred             HHcCChhhccHHHHHHHHHHcCCCc--cccHHHHHHHHHH
Confidence            3678999999999999999999995  4589999999864

Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.

>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues []

Probab=90.77  E-value=0.57  Score=32.97  Aligned_cols=35  Identities=20%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCCCC-CHHHHHHHHhc
Q 015376          371 LSALKLPELRALAKSRGVKGFSKM-KKAVLLELLAG  405 (408)
Q Consensus       371 Ls~MtvaELK~LAKe~GIKGySkM-KKaELIeALq~  405 (408)
                      +++|+-.+|++..++.||..-... +|.+||++++.
T Consensus         1 fdtWs~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~   36 (38)
T PF10281_consen    1 FDTWSDSDLKSWLKSHGIPVPKSAKTRDELLKLAKK   36 (38)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence            568999999999999999998888 99999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	408
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 2e-10
 Identities = 55/387 (14%), Positives = 110/387 (28%), Gaps = 106/387 (27%)

Query: 59  SKGASFACRASSGSYRRNPDF-----SRQNRNGYRGRNRQNEERDSIDDESELLSSRNGP 113
           SK      +      R N  F       + R          E+RD + +++++ +  N  
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 114 ILSLSNSPKFQATSTPGPREKEIVELFRKVQVQLRER------------------AAARE 155
                             R +  ++L R+  ++LR                         
Sbjct: 133 ------------------RLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 156 DKKTESMQGQ-----RKESETVDSLLKLLRK--HSVEQGKRKSSSGSSNDFSLEQDEPNG 208
            K    M  +      K   + +++L++L+K  + ++      S  SSN   L       
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHS--- 229

Query: 209 SHIEDKSTSFFDSSSRART-----ESREPNV-SSFTRPASNFRRRSPVTQFKYQPVYSSE 262
             I+ +      S             +     ++F     N   +  +T           
Sbjct: 230 --IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLSCKILLT----------- 271

Query: 263 ETEN-SISRLDSSGKGKKSSLEIHTDPKRESESEPELETEPEASFADGEVYD---EASDV 318
            T    ++   S+      SL+ H+      E +  L       + D    D   E    
Sbjct: 272 -TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-----LKYLDCRPQDLPREVLTT 325

Query: 319 ESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGESSDNDEDENKQEEIENGDLSALKLPE 378
               +   S+  E + +     D+  ++            + +K   I    L+ L+  E
Sbjct: 326 NPRRL---SIIAESIRDGLATWDN--WK----------HVNCDKLTTIIESSLNVLEPAE 370

Query: 379 LRALAKSRGVKGFSKMKK--AVLLELL 403
            R +     V  F        +LL L+
Sbjct: 371 YRKMFDRLSV--FPPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
2out_A	131	MU-like prophage flumu protein GP35, protein HI150	98.24
2do1_A	55	Nuclear protein HCC-1; SAP domain, structural geno	96.94
1h1j_S	51	THO1 protein; SAP domain, DNA binding; NMR {Saccha	96.79
1zrj_A	50	E1B-55KDA-associated protein 5 isoform C; SAP doma	96.55
2kvu_A	75	MKL/myocardin-like protein 1; SAP motif, DNA/RNA b	96.42
1jjr_A	151	KU70, thyroid autoantigen; DNA repair protein, pro	95.63
2rnn_A	114	E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind	95.25
1jjr_A	151	KU70, thyroid autoantigen; DNA repair protein, pro	95.19
1jey_A	609	KU70; double-strand DNA break repair, non-homologo	90.76
2ld7_A	94	Histone deacetylase complex subunit SAP30; transcr	87.36

>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1

Probab=98.24  E-value=8e-07  Score=77.55  Aligned_cols=39  Identities=28%  Similarity=0.393  Sum_probs=36.7

Q ss_pred             cCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcC
Q 015376          368 NGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGS  406 (408)
Q Consensus       368 ~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~s  406 (408)
                      ..+|..|||+|||++++++||+++++|+|.|||++|...
T Consensus        86 ~~~l~~lTV~ELKa~Lde~gIe~~ssakKaELiaLL~~a  124 (131)
T 2out_A           86 STDLNTFTVEQLKAQLTERGITFKQSATKAELIALFAPA  124 (131)
T ss_dssp             CCSSTTCCSHHHHHHHHHHTCCCSSSCCSHHHHHHCCSC
T ss_pred             cCccccccHHHHHHHHHHcCCcccccCCHHHHHHHHHHh
Confidence            478999999999999999999999999999999999764

>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1

Probab=96.94  E-value=0.00086  Score=50.69  Aligned_cols=35  Identities=31%  Similarity=0.370  Sum_probs=30.8

Q ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          369 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       369 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      .+|+.|||+|||++++.+|+.--.  +|+|||+.|+.
T Consensus         8 ~~l~klkV~eLK~~L~~rGL~~~G--~KaeLieRL~~   42 (55)
T 2do1_A            8 VELHKLKLAELKQECLARGLETKG--IKQDLIHRLQA   42 (55)
T ss_dssp             CCTTTSCHHHHHHHHHHHTCCCCS--CHHHHHHHHHH
T ss_pred             cCHHHCcHHHHHHHHHHcCCCCCC--cHHHHHHHHHH
Confidence            479999999999999999998633  79999999864

>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A

Probab=96.79  E-value=0.0012  Score=49.20  Aligned_cols=35  Identities=26%  Similarity=0.279  Sum_probs=30.3

Q ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          369 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       369 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      .+|+.|||+|||++++.+||.-  +=+|+|||+.|..
T Consensus         3 ~~~~kltV~eLK~~Lk~RGL~~--~G~KadLieRL~~   37 (51)
T 1h1j_S            3 ADYSSLTVVQLKDLLTKRNLSV--GGLKNELVQRLIK   37 (51)
T ss_dssp             CSGGGCCHHHHHHHHHHTTCCC--CSSHHHHHHHHHH
T ss_pred             chHHHCcHHHHHHHHHHcCCCC--CCcHHHHHHHHHH
Confidence            4789999999999999999986  2359999999864

>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1

Probab=96.55  E-value=0.0024  Score=47.50  Aligned_cols=35  Identities=37%  Similarity=0.398  Sum_probs=30.5

Q ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          369 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       369 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      .+|+.|||+|||+.++.+||.-  +=+|+|||+-|+.
T Consensus         8 ~~~~klkV~eLK~eLk~RgL~~--~G~Ka~Li~RL~~   42 (50)
T 1zrj_A            8 MDVRRLKVNELREELQRRGLDT--RGLKAELAERLQA   42 (50)
T ss_dssp             CCGGGSCHHHHHHHHHHTTCCC--CSCHHHHHHHHHH
T ss_pred             CCHHHCcHHHHHHHHHHcCCCC--CCcHHHHHHHHHH
Confidence            5899999999999999999985  3359999999864

>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A

Probab=96.42  E-value=0.0035  Score=50.31  Aligned_cols=34  Identities=29%  Similarity=0.358  Sum_probs=30.0

Q ss_pred             CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          370 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       370 dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      +|+.|||+|||++.+.+||.--+  +|+|||+.|+.
T Consensus        25 ~l~klkVaeLK~eLk~RGL~~sG--~KaeLIeRL~~   58 (75)
T 2kvu_A           25 NLDDMKVAELKQELKLRSLPVSG--TKTELIERLRA   58 (75)
T ss_dssp             TTTTSCHHHHHHHHHHTTCCCCS--CHHHHHHHHHH
T ss_pred             HHHHCcHHHHHHHHHHcCCCCCC--CHHHHHHHHHH
Confidence            89999999999999999998622  59999999964

>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}

Probab=95.25  E-value=0.014  Score=49.96  Aligned_cols=35  Identities=29%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          369 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       369 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      ..|..|||+|||++++++|+.-.+  +|+|||+.|+.
T Consensus        35 ~~l~kLtVaELK~~cr~~GL~~sG--kKaeLi~RI~~   69 (114)
T 2rnn_A           35 TLMELLKVSELKDICRSVSFPVSG--RKAVLQDLIRN   69 (114)
T ss_dssp             HHHTTCCHHHHHHHHHHTTCCTTS--CHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHcCCCcCC--cHHHHHHHHHH
Confidence            468999999999999999998533  59999999853

>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B

Probab=90.76  E-value=0.045  Score=55.50  Aligned_cols=37  Identities=35%  Similarity=0.566  Sum_probs=0.0

Q ss_pred             ccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          367 ENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       367 ~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      ..+.|+.|||++||++++.+|++  +..||+|||+.|..
T Consensus       569 ~~g~l~~~tv~~Lk~~l~~~~~~--~~~kK~~li~~i~~  605 (609)
T 1jey_A          569 SKGTLGKFTVPMLKEACRAYGLK--SGLKKQELLEALTK  605 (609)
T ss_dssp             ---------------------------------------
T ss_pred             HCCCchhccHHHHHHHHHHcCCC--CCCcHHHHHHHHHH
Confidence            45789999999999999999987  57899999999864

>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}

Probab=87.36  E-value=1.4  Score=36.47  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=34.6

Q ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          369 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       369 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      -+|..|.+.-|+...+..+|.-...+.|.+|+.+++.
T Consensus        22 vdf~kL~~~tLrrY~r~y~L~~~~~~sK~qLa~aV~k   58 (94)
T 2ld7_A           22 VDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGC   58 (94)
T ss_dssp             CCCSSSCHHHHHHHHHHTTCCCCSSCCHHHHHHHHHH
T ss_pred             cCHHHCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            4899999999999999999999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	408
d1jeqa1	51	a.140.2.1 (A:559-609) DNA binding C-terminal domai	8e-04

>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: DNA binding C-terminal domain of ku70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 8e-04
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 359 DENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELL 403
           +E  +  I  G L    +P L+   ++ G+K  S +KK  LLE L
Sbjct: 3   EEELKTHISKGTLGKFTVPMLKEACRAYGLK--SGLKKQELLEAL 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d1a62a1	47	Rho termination factor, N-terminal domain {Escheri	98.19
d1jeqa1	51	DNA binding C-terminal domain of ku70 {Human (Homo	97.6
d1h1js_	44	S/mar DNA-binding protein Tho1 {Baker's yeast (Sac	97.49
d1zrja1	37	Heterogeneous nuclear ribonucleoprotein U-like pro	96.82
d2do1a1	42	Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId	88.29

>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: Rho N-terminal domain-like
family: Rho termination factor, N-terminal domain
domain: Rho termination factor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=3.7e-07  Score=65.57  Aligned_cols=35  Identities=20%  Similarity=0.406  Sum_probs=32.8

Q ss_pred             CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHh
Q 015376          370 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA  404 (408)
Q Consensus       370 dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq  404 (408)
                      +|..++++||.+||+++||++|++|+|.|||-+|-
T Consensus         5 eLk~k~~~EL~~iA~~lgIen~~~lrKQeLif~IL   39 (47)
T d1a62a1           5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAIL   39 (47)
T ss_dssp             HHHTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHcCCCCcccccHHHHHHHHH
Confidence            47889999999999999999999999999999883

>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: DNA binding C-terminal domain of ku70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=2.2e-05  Score=56.83  Aligned_cols=40  Identities=33%  Similarity=0.517  Sum_probs=34.5

Q ss_pred             hhhccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          364 EEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       364 ~~~~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      +....++|+.|||++||++++++|++- +. +|+|||+.|..
T Consensus         8 ~~~~~~~L~kltV~~LK~~lk~~gL~~-sG-kKa~Li~Ri~~   47 (51)
T d1jeqa1           8 THISKGTLGKFTVPMLKEACRAYGLKS-GL-KKQELLEALTK   47 (51)
T ss_dssp             HHHHHTCGGGCCHHHHHHHHHHTTCCC-CS-SHHHHHHHHHH
T ss_pred             HHhccCcHhhCcHHHHHHHHHHcCCCC-CC-cHHHHHHHHHH
Confidence            344567999999999999999999997 44 99999999864

>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: S/mar DNA-binding protein Tho1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=4.6e-05  Score=53.82  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             cCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          368 NGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       368 ~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      ..+|+.|||+|||++++++||+- +. +|+|||+-|..
T Consensus         2 ~~dy~~ltv~eLK~~lk~rgL~~-sG-~Ka~Li~RL~~   37 (44)
T d1h1js_           2 SADYSSLTVVQLKDLLTKRNLSV-GG-LKNELVQRLIK   37 (44)
T ss_dssp             CCSGGGCCHHHHHHHHHHTTCCC-CS-SHHHHHHHHHH
T ss_pred             CCcHHHCcHHHHHHHHHHCCCCC-CC-CHHHHHHHHHH
Confidence            35899999999999999999995 33 79999999965

>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: Heterogeneous nuclear ribonucleoprotein U-like protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00054  Score=46.76  Aligned_cols=34  Identities=38%  Similarity=0.444  Sum_probs=29.8

Q ss_pred             CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          370 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       370 dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      +|+.|||+|||++++++|+.-  +=+|++||+-|+.
T Consensus         2 d~~~m~V~eLK~~Lk~rgL~~--sG~Ka~Li~RL~~   35 (37)
T d1zrja1           2 DVRRLKVNELREELQRRGLDT--RGLKAELAERLQA   35 (37)
T ss_dssp             CGGGSCHHHHHHHHHHTTCCC--CSCHHHHHHHHHH
T ss_pred             ChHHCcHHHHHHHHHHCCCCC--CCCHHHHHHHHHH
Confidence            688999999999999999986  3369999998864

>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: Nuclear protein hcc-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.29  E-value=0.34  Score=33.58  Aligned_cols=34  Identities=35%  Similarity=0.438  Sum_probs=28.2

Q ss_pred             CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376          370 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  405 (408)
Q Consensus       370 dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~  405 (408)
                      .|..++++|||.-|-.+|+.-  +=+|.|||.-|+.
T Consensus         2 el~klklaelkqec~argl~~--kgnk~dli~rlqa   35 (42)
T d2do1a1           2 ELHKLKLAELKQECLARGLET--KGIKQDLIHRLQA   35 (42)
T ss_dssp             CTTTSCHHHHHHHHHHHTCCC--CSCHHHHHHHHHH
T ss_pred             chhHhHHHHHHHHHHHccccc--cCcHHHHHHHHHH
Confidence            477899999999888888763  5599999998864