Citrus Sinensis ID: 015386

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41

MFLQIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL

ccccccccccccEEccccHHHHHHHcccccccccccccEEEEEEEccEEEEEEEccccEEEEcccccccEEEEEccccccccccccccEEEccccccEEEEEEEccccEEEEEEEcccccEEEEEEEEcccccEEEEccccccEEEEEEccEEEEHHHHHHcccEEEEEEccccEEEEEEEccccccccEEEEEccccEEEEEcccEEccccEEEEEEEEEcccccccccccccccccccccEEEEEEEEcccccEEEEEEccccccccccccccccccccEEEEEEEccccccccEEEEccccccccccEEEEEcccEEEEEEccccccccccEEEEcccccccccccEEEEEEEEEccccEEEEEEEEccccccccEEEEEcccccccccccccccHHHHHHHHcc

ccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEEccEEEEEEcccccEEEEEcccccEEEccccccccccccccEcccccccccccEEEEEccccccEEEEEEEcccccEccccccccccccEEEcEEEcccEEEEccccEEEccHHHHcccccEEEEccccccEEEEEEccccccccEEEEEccccEEEEEEEccccccccEEEEEEcccccccccccccccccHHcccccEEEEEEEcccccEEEEEccccccccccccHcHcccccEEEEEEEccccccEEEEEEEEcccccccccEEEEccccEEEEEEEccccccccEEEEcccccccccccccEEEEEEEEccccccEEEEEEccccccccEEEEEccccccccccEEEccHHHHHHHHcc

mflqigdvKGLFGLLMVNMTLLRESFKVLdfsygngagntaLIYHHGKLLvlseidkpyvlkvlkdgdlqtlgmldydkrlnhpftahpkidpytdemftfgytqtppyvtyrviskdgfmhdpvpitmsapimmhdfaITENYAIfldlpmcfrQKEMVKEnkliyafdptikarfgvlpryarddlqirwfelpncyifhnanaweeeEDEVVLITCrvrnpdldmfngplketleDQTTELYEMRFNMktglasqkklspacvdfprinehymgrkqryVYGSILENIAKVTGMIKfdlraepetgktklevggnvkgifdlgpgrfgseavfvprepsstseeddgylIFHVHDENTGKSAVYVIDAktmsadpvavielphrvpygfhgiFLSEEQLEELAKL

mflqigdvkgLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRnpdldmfngplketleDQTTELYEMRFNMKTglasqkklspACVDFPRINehymgrkqryvyGSILENIAKVTGMIKFDLRAEPetgktklevggnvKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL

**LQIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNA*********VVLITCRVRNPDLDMFNGPLKETL**QTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFV************GYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLS**********

MFLQIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVP*********DDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		408	2.2.26 [Sep-21-2011]
O65572		538	Carotenoid 9,10(9',10')-c	yes	no	0.977	0.741	0.769	0.0
Q8LP17		541	Carotenoid 9,10(9',10')-c	N/A	no	0.995	0.750	0.746	0.0
Q94IR2		543	Carotenoid 9,10(9',10')-c	N/A	no	0.995	0.747	0.744	0.0
Q84KG5		546	Carotenoid 9,10(9',10')-c	N/A	no	0.982	0.734	0.771	0.0
O24592		604	9-cis-epoxycarotenoid dio	N/A	no	0.933	0.630	0.360	6e-69
Q9M9F5		657	9-cis-epoxycarotenoid dio	no	no	0.926	0.575	0.386	4e-68
Q9C6Z1		589	Probable 9-cis-epoxycarot	no	no	0.924	0.640	0.362	8e-66
Q9LRR7		599	9-cis-epoxycarotenoid dio	no	no	0.921	0.627	0.351	9e-65
O49675		595	Probable carotenoid cleav	no	no	0.870	0.596	0.368	5e-64
Q9LRM7		577	9-cis-epoxycarotenoid dio	no	no	0.921	0.651	0.354	6e-62

>sp\|O65572\|CCD1_ARATH Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2	Back alignment and function desciption

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/403 (76%), Positives = 353/403 (87%), Gaps = 4/403 (0%)

Query: 2   FLQIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVL 61
           F++IGD+KG FGLLMVN+  LR   K+LD +YGNG  NTAL+YHHGKLL L E DKPYV+
Sbjct: 136 FMKIGDLKGFFGLLMVNVQQLRTKLKILDNTYGNGTANTALVYHHGKLLALQEADKPYVI 195

Query: 62  KVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFM 121
           KVL+DGDLQTLG++DYDKRL H FTAHPK+DP T EMFTFGY+ TPPY+TYRVISKDG M
Sbjct: 196 KVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTFGYSHTPPYLTYRVISKDGIM 255

Query: 122 HDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLP 181
           HDPVPIT+S PIMMHDFAITE YAIF+DLPM FR KEMVKE K+IY+FDPT KARFGVLP
Sbjct: 256 HDPVPITISEPIMMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLP 315

Query: 182 RYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQT 241
           RYA+D+L IRWFELPNC+IFHNANAW EEEDEVVLITCR+ NPDLDM +G +KE LE+  
Sbjct: 316 RYAKDELMIRWFELPNCFIFHNANAW-EEEDEVVLITCRLENPDLDMVSGKVKEKLENFG 374

Query: 242 TELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFD 301
            ELYEMRFNMKTG ASQKKLS + VDFPRINE Y G+KQRYVYG+IL++IAKVTG+IKFD
Sbjct: 375 NELYEMRFNMKTGSASQKKLSASAVDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFD 434

Query: 302 LRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENT 361
           L AE ETGK  LEVGGN+KGI+DLG GR+GSEA++VPRE   T+EEDDGYLIF VHDENT
Sbjct: 435 LHAEAETGKRMLEVGGNIKGIYDLGEGRYGSEAIYVPRE---TAEEDDGYLIFFVHDENT 491

Query: 362 GKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEE 404
           GKS V VIDAKTMSA+PVAV+ELPHRVPYGFH +F++EEQL+E
Sbjct: 492 GKSCVTVIDAKTMSAEPVAVVELPHRVPYGFHALFVTEEQLQE 534

Cleaves a variety of carotenoids symmetrically at both the 9-10 and 9'-10' double bonds. Active on beta,beta-carotene, lutein, zeaxanthin, all-trans-violaxanthin, 9-cis-violaxanthin and 9'-cis-neoxanthin. With most substrates, the carotenoid is symmetrically cleaved. Probably not involved in abscisic acid biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: nEC: 4

>sp\|Q8LP17\|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1	Back alignment and function description

>sp\|Q94IR2\|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1	Back alignment and function description

>sp\|Q84KG5\|CCD_CROSA Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1	Back alignment and function description

>sp\|O24592\|NCED1_MAIZE 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2	Back alignment and function description

>sp\|Q9M9F5\|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1	Back alignment and function description

>sp\|Q9C6Z1\|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1	Back alignment and function description

>sp\|Q9LRR7\|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1	Back alignment and function description

>sp\|O49675\|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1	Back alignment and function description

>sp\|Q9LRM7\|NCED6_ARATH 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		408
307592509		552	carotenoid cleavage dioxygenase 1 [Manih	0.992	0.733	0.783	0.0
134285450		548	9-cis-epoxycarotenoid dioxygenase [Casta	0.995	0.740	0.781	0.0
449436307		547	PREDICTED: carotenoid 9,10(9',10')-cleav	0.995	0.742	0.769	0.0
225450111		546	PREDICTED: carotenoid 9,10(9',10')-cleav	0.995	0.743	0.776	0.0
387763758		546	carotenoid cleavage dioxygenase 1 [Vitis	0.995	0.743	0.776	0.0
61654494		542	9,10[9',10']carotenoid cleavage dioxygen	0.995	0.749	0.776	0.0
163881523		552	carotenoid cleavage dioxygenase 1 [Rosa	0.995	0.735	0.764	0.0
387763760		546	carotenoid cleavage dioxygenase 1 [Vitis	0.995	0.743	0.776	0.0
387763764		546	carotenoid cleavage dioxygenase 1 [Vitis	0.995	0.743	0.773	0.0
82548252		543	carotenoid cleavage dioxygenase [Cucumis	0.995	0.747	0.761	0.0

>gi\|307592509\|gb\|ADN65332.1\| carotenoid cleavage dioxygenase 1 [Manihot esculenta]	Back alignment and taxonomy information

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/406 (78%), Positives = 355/406 (87%), Gaps = 1/406 (0%)

Query: 3   LQIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLK 62
           +++GD+KGLFGL MVNM +LR   KVLD SYGNG  NTALIYHHGKLL L E DKPYV+K
Sbjct: 148 MKVGDLKGLFGLFMVNMQILRAKLKVLDMSYGNGTANTALIYHHGKLLALQEADKPYVVK 207

Query: 63  VLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMH 122
           VL+DGDLQT+GMLDYDKRL H FTAHPK+DP T EMFTFGY   PPY+TYRVISKDG MH
Sbjct: 208 VLEDGDLQTVGMLDYDKRLKHSFTAHPKVDPNTGEMFTFGYAHEPPYITYRVISKDGVMH 267

Query: 123 DPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPR 182
           DPVPIT+S PIMMHDFAITENYAIFLDLP+ FR KEMVK+ KLI+ FD T KARFGVLPR
Sbjct: 268 DPVPITISDPIMMHDFAITENYAIFLDLPLYFRPKEMVKDKKLIFTFDATKKARFGVLPR 327

Query: 183 YARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTT 242
           YA+DD QIRWFELPNC+IFHNANAW EEEDEVVLITCR+ NPDLDM +G +KE LE+   
Sbjct: 328 YAKDDHQIRWFELPNCFIFHNANAW-EEEDEVVLITCRLENPDLDMVSGNVKEKLENFAN 386

Query: 243 ELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDL 302
           ELYEMRFNMKTG+ASQK+LS   VDFPR+NE Y GRKQRYVYG+IL++IAKVTG+IKFDL
Sbjct: 387 ELYEMRFNMKTGVASQKRLSAPAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDL 446

Query: 303 RAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTG 362
            AEP+ GKTKLEVGGN+KGIFDLGPGRFGSEAVFVPREP ++SEEDDGYLIF  HDENTG
Sbjct: 447 HAEPQQGKTKLEVGGNIKGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFTHDENTG 506

Query: 363 KSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL 408
           KS+V VIDAKTMS+DPVAV+ELPHRVPYGFH  F++EEQL+  A L
Sbjct: 507 KSSVNVIDAKTMSSDPVAVVELPHRVPYGFHAFFVTEEQLQAQATL 552

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|134285450\|gb\|ABO69703.1\| 9-cis-epoxycarotenoid dioxygenase [Castanea mollissima]	Back alignment and taxonomy information

>gi\|449436307\|ref\|XP_004135934.1\| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225450111\|ref\|XP_002278750.1\| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Vitis vinifera] gi\|297736256\|emb\|CBI24894.3\| unnamed protein product [Vitis vinifera] gi\|387763762\|gb\|AFJ94679.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera] gi\|387763766\|gb\|AFJ94681.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|387763758\|gb\|AFJ94677.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|61654494\|gb\|AAX48772.1\| 9,10[9',10']carotenoid cleavage dioxygenase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|163881523\|gb\|ABY47994.1\| carotenoid cleavage dioxygenase 1 [Rosa x damascena]	Back alignment and taxonomy information

>gi\|387763760\|gb\|AFJ94678.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|387763764\|gb\|AFJ94680.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|82548252\|gb\|ABB82946.1\| carotenoid cleavage dioxygenase [Cucumis melo]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		408
TAIR\|locus:2087418		538	CCD1 "carotenoid cleavage diox	0.977	0.741	0.769	4.9e-172
TAIR\|locus:2202492		589	NCED5 "nine-cis-epoxycarotenoi	0.919	0.636	0.372	3.3e-63
TAIR\|locus:2134796		595	NCED4 "nine-cis-epoxycarotenoi	0.870	0.596	0.368	4.8e-62
TAIR\|locus:2091652		599	NCED3 "nine-cis-epoxycarotenoi	0.860	0.585	0.352	1.5e-58
TAIR\|locus:2124489		583	NCED2 "nine-cis-epoxycarotenoi	0.933	0.653	0.346	1.6e-56
TAIR\|locus:2032085		657	NCED9 "nine-cis-epoxycarotenoi	0.772	0.479	0.375	1.9e-51
TAIR\|locus:2093751		577	NCED6 "nine-cis-epoxycarotenoi	0.852	0.603	0.335	3.2e-49
UNIPROTKB\|O06785		501	MT0683 "Carotenoid cleavage ox	0.536	0.437	0.304	9.1e-35
UNIPROTKB\|Q53353		485	Q53353 "Lignostilbene-alpha,be	0.867	0.729	0.288	4.2e-31
ASPGD\|ASPL0000046682		480	AN1643 [Emericella nidulans (t	0.828	0.704	0.303	1.8e-29

TAIR\|locus:2087418 CCD1 "carotenoid cleavage dioxygenase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1672 (593.6 bits), Expect = 4.9e-172, P = 4.9e-172
 Identities = 310/403 (76%), Positives = 353/403 (87%)

Query:     2 FLQIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVL 61
             F++IGD+KG FGLLMVN+  LR   K+LD +YGNG  NTAL+YHHGKLL L E DKPYV+
Sbjct:   136 FMKIGDLKGFFGLLMVNVQQLRTKLKILDNTYGNGTANTALVYHHGKLLALQEADKPYVI 195

Query:    62 KVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFM 121
             KVL+DGDLQTLG++DYDKRL H FTAHPK+DP T EMFTFGY+ TPPY+TYRVISKDG M
Sbjct:   196 KVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTFGYSHTPPYLTYRVISKDGIM 255

Query:   122 HDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLP 181
             HDPVPIT+S PIMMHDFAITE YAIF+DLPM FR KEMVKE K+IY+FDPT KARFGVLP
Sbjct:   256 HDPVPITISEPIMMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLP 315

Query:   182 RYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQT 241
             RYA+D+L IRWFELPNC+IFHNANAWEEE DEVVLITCR+ NPDLDM +G +KE LE+  
Sbjct:   316 RYAKDELMIRWFELPNCFIFHNANAWEEE-DEVVLITCRLENPDLDMVSGKVKEKLENFG 374

Query:   242 TELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFD 301
              ELYEMRFNMKTG ASQKKLS + VDFPRINE Y G+KQRYVYG+IL++IAKVTG+IKFD
Sbjct:   375 NELYEMRFNMKTGSASQKKLSASAVDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFD 434

Query:   302 LRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENT 361
             L AE ETGK  LEVGGN+KGI+DLG GR+GSEA++VPRE   T+EEDDGYLIF VHDENT
Sbjct:   435 LHAEAETGKRMLEVGGNIKGIYDLGEGRYGSEAIYVPRE---TAEEDDGYLIFFVHDENT 491

Query:   362 GKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEE 404
             GKS V VIDAKTMSA+PVAV+ELPHRVPYGFH +F++EEQL+E
Sbjct:   492 GKSCVTVIDAKTMSAEPVAVVELPHRVPYGFHALFVTEEQLQE 534

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0016118 "carotenoid catabolic process" evidence=IDA

GO:0045549 "9-cis-epoxycarotenoid dioxygenase activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0016121 "carotene catabolic process" evidence=IMP

GO:0016124 "xanthophyll catabolic process" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

TAIR\|locus:2202492 NCED5 "nine-cis-epoxycarotenoid dioxygenase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2134796 NCED4 "nine-cis-epoxycarotenoid dioxygenase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091652 NCED3 "nine-cis-epoxycarotenoid dioxygenase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124489 NCED2 "nine-cis-epoxycarotenoid dioxygenase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2032085 NCED9 "nine-cis-epoxycarotenoid dioxygenase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2093751 NCED6 "nine-cis-epoxycarotenoid dioxygenase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|O06785 MT0683 "Carotenoid cleavage oxygenase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53353 Q53353 "Lignostilbene-alpha,beta-dioxygenase isozyme I" [Sphingomonas paucimobilis (taxid:13689)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000046682 AN1643 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84KG5	CCD_CROSA	1, ., 1, 4, ., 9, 9, ., n, 4	0.7711	0.9828	0.7344	N/A	no
Q8LP17	CCD1_PEA	1, ., 1, 4, ., 9, 9, ., n, 4	0.7469	0.9950	0.7504	N/A	no
O65572	CCD1_ARATH	1, ., 1, 4, ., 9, 9, ., n, 4	0.7692	0.9779	0.7416	yes	no
Q94IR2	CCD1_PHAVU	1, ., 1, 4, ., 9, 9, ., n, 4	0.7444	0.9950	0.7476	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.14.99.n4	0.946
3rd Layer	1.14.99	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00091041	annotation not avaliable (545 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00400044	hypothetical protein (263 aa)	•	0.493

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		408
PLN02491		545	PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava	0.0
pfam03055		469	pfam03055, RPE65, Retinal pigment epithelial membr	1e-122
PLN02258		590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	1e-109
COG3670		490	COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge	5e-88
PLN02969		610	PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen	6e-11

>gnl\|CDD\|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

 Score =  752 bits (1944), Expect = 0.0
 Identities = 331/407 (81%), Positives = 363/407 (89%), Gaps = 1/407 (0%)

Query: 2   FLQIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVL 61
           F++IGD+KGLFGLLMVNM  LR   KVLDFSYGNG GNTALIYHHGKLL LSE DKPYV+
Sbjct: 140 FMKIGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHHGKLLALSEADKPYVV 199

Query: 62  KVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFM 121
           KVL+DGDLQTLG+LDYDKRL H FTAHPK+DP+T EMFTFGY+  PPY+TYRVISKDG M
Sbjct: 200 KVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAM 259

Query: 122 HDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLP 181
           HDPVPIT+S PIMMHDFAITENYAIF+DLP+ FR KEMVKE K IY FD T KARFGVLP
Sbjct: 260 HDPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLP 319

Query: 182 RYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQT 241
           RYA+D+L IRWFELPNC+IFHNANAW EEEDEVVLITCR+ NPDLDM NG +KE LE+  
Sbjct: 320 RYAKDELMIRWFELPNCFIFHNANAW-EEEDEVVLITCRLENPDLDMVNGKVKEKLENFG 378

Query: 242 TELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFD 301
            ELYEMRFNMKTG ASQKKLS + VDFPR+NE Y GRKQRYVYG+IL++IAKVTG+IKFD
Sbjct: 379 NELYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFD 438

Query: 302 LRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENT 361
           L AEPETGK KLEVGGNVKGIFDLGPGRFGSEA+FVPREP +TSEEDDGYLIF VHDENT
Sbjct: 439 LHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENT 498

Query: 362 GKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL 408
           GKS+V VIDAKTMSADPVAV+ELPHRVPYGFH  F++EEQL+E AKL
Sbjct: 499 GKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 545

Length = 545

>gnl\|CDD\|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein	Back alignment and domain information

>gnl\|CDD\|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>gnl\|CDD\|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		408
PLN02491		545	carotenoid 9,10(9',10')-cleavage dioxygenase	100.0
PLN02258		590	9-cis-epoxycarotenoid dioxygenase NCED	100.0
COG3670		490	Lignostilbene-alpha,beta-dioxygenase and related e	100.0
PF03055		486	RPE65: Retinal pigment epithelial membrane protein	100.0
PLN02969		610	9-cis-epoxycarotenoid dioxygenase	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	99.83

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

Probab=100.00  E-value=4.5e-102  Score=810.41  Aligned_cols=406  Identities=81%  Similarity=1.325  Sum_probs=361.0

Q ss_pred             CCceeccccchhHHHHHHHHHHHHhccccccCCCCCcceeEEEEECCEEEEEEcCCcCEEEec-cCCCCcccccceeccc
Q 015386            1 MFLQIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKV-LKDGDLQTLGMLDYDK   79 (408)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ANt~V~~~~grLlAl~E~g~P~~ldp-~~~~tLeT~g~~d~~~   79 (408)
                      +|+.|+.++|++|+++..+..+|..++.++...++|+|||||++|+||||||||+|.||++++ +| .||||+|.+||+|
T Consensus       139 ~~~~~~~~~g~~g~~~~~~~~~r~~~~~~~~~~~~~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp-~tLeT~G~~df~g  217 (545)
T PLN02491        139 KFMKIGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHHGKLLALSEADKPYVVKVLED-GDLQTLGLLDYDK  217 (545)
T ss_pred             cccccccccccchhhhhhhhhhhccccccccccCCCCCceeEEEECCEEEEEEcCCCCeEecCCCC-CCcceeeecccCC
Confidence            356688899999999999999999888887777789999999999999999999999999875 44 4999999999999


Q ss_pred             ccCCCCCCCceecCCCCcEEEEEecCCCCeEEEEEEcCCCCeeeeEEEeeCCccceeeeeecCCEEEEEeCCcccCHHHH
Q 015386           80 RLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEM  159 (408)
Q Consensus        80 ~l~~~~tAHP~~Dp~tGel~~fg~~~~~~~~~~~~~d~~g~~~~~~~~~~p~~~~iHdfa~T~ny~V~~~~P~~~~~~~~  159 (408)
                      +|..+||||||+||+|||+++|||+..+|+++|+++|++|++.+.+++++|.++|||||+|||||+||+++|+.+++.+|
T Consensus       218 ~l~~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~~~~G~~~~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~  297 (545)
T PLN02491        218 RLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEM  297 (545)
T ss_pred             ccCcccccCccCcCCCCCEEEEEecCCCCcEEEEEECCCCcCcceeEeecCCCceeeeeEecCCEEEEEECCcccCHHHH
Confidence            99889999999999999999999988779999999999999998899999999999999999999999999999999999


Q ss_pred             HHcCCeeeEECCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEecccccccCCCeEEEEEEeccCCCCcccCCcccccccc
Q 015386          160 VKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLED  239 (408)
Q Consensus       160 l~~g~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~~H~~NAyE~~~~~ivvd~~~~~~~~~~~~~~~~~~~~~~  239 (408)
                      +++++.++.|+|++++||+||||++++.++++||++|+||+||++||||++ |+||+|+|++++++++...+...+..+.
T Consensus       298 ~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~Ee~-~~Ivvd~~~~~~~~~~~~~~~~~~~~~~  376 (545)
T PLN02491        298 VKEKKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEE-DEVVLITCRLENPDLDMVNGKVKEKLEN  376 (545)
T ss_pred             hhCCCceeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCccccC-CeEEEEEeccCCCccccccccccccccc
Confidence            887778899999999999999998755568999999999999999999987 8999999999887654433332222334


Q ss_pred             ccccEEEEEEeCCCCCeeEEeeCCCCCCCCccCCCCCCCCCcEEEEeccCCCCCCCeEEEEecccCCCcCceeeeecCce
Q 015386          240 QTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNV  319 (408)
Q Consensus       240 ~~~~l~R~~idl~tg~v~~~~l~~~~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~lvk~D~~~~~~~g~~~~~~~~~~  319 (408)
                      ..++|+|||||+++|+++++.|++.++|||+||++|.||+|||+|++..++...+++|+|+|+++++.+|+.+.+.+++.
T Consensus       377 ~~~~l~r~ridl~tg~~~~~~l~~~~~EfP~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~  456 (545)
T PLN02491        377 FGNELYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNV  456 (545)
T ss_pred             cCceEEEEEEECCCCceeeeccCCcccccCccCHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccccccce
Confidence            56899999999999999999999999999999999999999999999877666789999999997433344322234445


Q ss_pred             eeEEEcCCCCcccceEEeeCCCCCCCCCCCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccCh
Q 015386          320 KGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSE  399 (408)
Q Consensus       320 ~~~~~~~~~~~~~EPvFVPrp~~~~~~EDDG~LL~~v~d~~~~~s~L~IlDA~~l~~gpVAri~Lp~~vP~gfHG~w~p~  399 (408)
                      .+.||+++++|+|||+||||+++.+++|||||||++|+|..+++|+|+||||++|++|||||++||+|||+||||+|+++
T Consensus       457 ~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~  536 (545)
T PLN02491        457 KGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTE  536 (545)
T ss_pred             eEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCccccCcCH
Confidence            56899999999999999999754125899999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhcC
Q 015386          400 EQLEELAKL  408 (408)
Q Consensus       400 ~~~~~~~~~  408 (408)
                      +++++|+.+
T Consensus       537 ~~l~~~~~~  545 (545)
T PLN02491        537 EQLQEQAKL  545 (545)
T ss_pred             HHHHHhhcC
Confidence            999988654

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection	Back alignment and domain information

>PLN02969 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		408
3npe_A		529	Structure Of Vp14 In Complex With Oxygen Length = 5		4e-70
2biw_A		490	Crystal Structure Of Apocarotenoid Cleavage Oxygena		1e-27

>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529

Back alignment and structure

Iteration: 1

Score = 261 bits (668), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 148/410 (36%), Positives = 228/410 (55%), Gaps = 29/410 (7%) Query: 5 IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVL 64 IG++ G G+ + + R + ++D S G G N L+Y +G+LL +SE D PY ++V Sbjct: 140 IGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVA 199 Query: 65 KDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTP-PYVTYRVISKDGFMHD 123 DGDL+T+G D+D +L AHPK+DP T E+ Y PY+ Y DG D Sbjct: 200 DDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSD 259 Query: 124 PVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRY 183 V I + P M+HDFAITEN + D + F+ +EM++ + D +RFGVLP++ Sbjct: 260 DVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPV-VLDAAKTSRFGVLPKH 318 Query: 184 ARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTE 243 A D ++ W ++P+C+ FH NAWE+E V++ P +FN E+ E + Sbjct: 319 AADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFN----ESDERLESV 374 Query: 244 LYEMRFNMKTGLASQKKLSPAC----VDFPRINEHYMGRKQRYVYGSILENIAKVTGMIK 299 L E+R + +TG ++++ + P ++ +N + +GR+ RY Y ++ E KV+G K Sbjct: 375 LTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAK 434 Query: 300 FDLRAEPETGK-TKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSE--EDDGYLIFHV 356 DL TG+ TK F+ G GRFG E FVP +P++ EDDGY++ V Sbjct: 435 VDL----STGELTK----------FEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFV 480 Query: 357 HDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELA 406 HDE G S + V++A M + A ++LP RVP+GFHG F++ ++LE A Sbjct: 481 HDERAGTSELLVVNAADMRLE--ATVQLPSRVPFGFHGTFITGQELEAQA 528

PyMOL of 3npe

>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		408
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	1e-121
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	1e-117
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	2e-83
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529	Back alignment and structure

 Score =  362 bits (929), Expect = e-121
 Identities = 145/409 (35%), Positives = 222/409 (54%), Gaps = 27/409 (6%)

Query: 5   IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVL 64
           IG++ G  G+  + +   R +  ++D S G G  N  L+Y +G+LL +SE D PY ++V 
Sbjct: 140 IGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVA 199

Query: 65  KDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGY-TQTPPYVTYRVISKDGFMHD 123
            DGDL+T+G  D+D +L     AHPK+DP T E+    Y     PY+ Y     DG   D
Sbjct: 200 DDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSD 259

Query: 124 PVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRY 183
            V I +  P M+HDFAITEN  +  D  + F+ +EM++        D    +RFGVLP++
Sbjct: 260 DVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLR-GGSPVVLDAAKTSRFGVLPKH 318

Query: 184 ARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTE 243
           A D  ++ W ++P+C+ FH  NAWE+E    V++      P   +FN       E   + 
Sbjct: 319 AADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNES----DERLESV 374

Query: 244 LYEMRFNMKTGLASQKKLSPA----CVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIK 299
           L E+R + +TG ++++ + P      ++   +N + +GR+ RY Y ++ E   KV+G  K
Sbjct: 375 LTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAK 434

Query: 300 FDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTS--EEDDGYLIFHVH 357
            DL     TG+            F+ G GRFG E  FVP +P++     EDDGY++  VH
Sbjct: 435 VDL----STGELT---------KFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVH 481

Query: 358 DENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELA 406
           DE  G S + V++A  M     A ++LP RVP+GFHG F++ ++LE  A
Sbjct: 482 DERAGTSELLVVNAADMR--LEATVQLPSRVPFGFHGTFITGQELEAQA 528

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		408
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	100.0
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	100.0
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	100.0

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}	Back alignment and structure

Probab=100.00  E-value=1.4e-96  Score=768.40  Aligned_cols=382  Identities=39%  Similarity=0.721  Sum_probs=342.2

Q ss_pred             Cce-eccccchhHHHHHHHHHHHHhccccccCCCCCcceeEEEEECCEEEEEEcCCcCEEEeccCCCCcccccceecccc
Q 015386            2 FLQ-IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKR   80 (408)
Q Consensus         2 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ANt~V~~~~grLlAl~E~g~P~~ldp~~~~tLeT~g~~d~~~~   80 (408)
                      |+. ++++.|.++++...+...|..++.++...++|+|||||++|+||||||||+|.||+++++|+.||||+|.+||+|+
T Consensus       136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~  215 (529)
T 3npe_A          136 FPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQ  215 (529)
T ss_dssp             SCCTTTTTTSSTHHHHHHHHHHHHHTTSCCGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGC
T ss_pred             cccccccccccchhhhhhhhhhhcccccccccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCc
Confidence            444 6778888889998888889999988887778999999999999999999999999996655359999999999999


Q ss_pred             cCCCCCCCceecCCCCcEEEEEecCC-CCeEEEEEEcCCCCeeeeEEEeeCCccceeeeeecCCEEEEEeCCcccCHHHH
Q 015386           81 LNHPFTAHPKIDPYTDEMFTFGYTQT-PPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEM  159 (408)
Q Consensus        81 l~~~~tAHP~~Dp~tGel~~fg~~~~-~~~~~~~~~d~~g~~~~~~~~~~p~~~~iHdfa~T~ny~V~~~~P~~~~~~~~  159 (408)
                      |..+||||||+||+|||+++|+|+.. .|+++|++++++|++.+.+++++|.++|||||+|||||+||+++|+++|+.+|
T Consensus       216 l~~~~tAHPk~Dp~TGel~~f~y~~~~~p~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~  295 (529)
T 3npe_A          216 LGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEM  295 (529)
T ss_dssp             CCSCCCSCCEECTTTCCEEEEECCSSSSCCCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGG
T ss_pred             cCCcccccCcCCCCCCcEEEEEeecCCCCcEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHH
Confidence            99899999999999999999999875 58999999999999988888899999999999999999999999999999999


Q ss_pred             HHcCCeeeEECCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEecccccccC-CCeEEEEEEeccCCCCcccCCccccccc
Q 015386          160 VKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEE-EDEVVLITCRVRNPDLDMFNGPLKETLE  238 (408)
Q Consensus       160 l~~g~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~~H~~NAyE~~-~~~ivvd~~~~~~~~~~~~~~~~~~~~~  238 (408)
                      +. |+.++.|+|++++||+||||++++.+.++||++|+||+||++||||++ +|+||+|.|++.+.+. .++    ....
T Consensus       296 ~~-g~~~~~~~p~~~tr~~VipR~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~-~~~----~~~~  369 (529)
T 3npe_A          296 LR-GGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADS-IFN----ESDE  369 (529)
T ss_dssp             TT-TCCSEEECTTSCCEEEEEETTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCC-SCC----SSSS
T ss_pred             hC-CCCceEECCCCCcEEEEEECCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchh-hhh----ccch
Confidence            75 678999999999999999999865568999999999999999999985 3789998888765431 111    1123


Q ss_pred             cccccEEEEEEeCCCCCeeEEeeC----CCCCCCCccCCCCCCCCCcEEEEeccCCCCCCCeEEEEecccCCCcCceeee
Q 015386          239 DQTTELYEMRFNMKTGLASQKKLS----PACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLE  314 (408)
Q Consensus       239 ~~~~~l~R~~idl~tg~v~~~~l~----~~~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~lvk~D~~~~~~~g~~~~~  314 (408)
                      ...++|+||+||+.+|+++++.|.    +.++|||+||++|.||+|||+|+++.++...+++|+|+|++|    |+.   
T Consensus       370 ~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~t----g~~---  442 (529)
T 3npe_A          370 RLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLST----GEL---  442 (529)
T ss_dssp             CCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTT----CCE---
T ss_pred             hhccceEEEEEcCCCCCEEeEEecccccCccccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCC----Cce---
Confidence            456789999999999999888887    488999999999999999999999887667789999999996    552   


Q ss_pred             ecCceeeEEEcCCCCcccceEEeeCCC----CCCCCCCCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCC
Q 015386          315 VGGNVKGIFDLGPGRFGSEAVFVPREP----SSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPY  390 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~EPvFVPrp~----~~~~~EDDG~LL~~v~d~~~~~s~L~IlDA~~l~~gpVAri~Lp~~vP~  390 (408)
                            +.||+++++|+|||||||||+    +  ++|||||||++|+|..+++|+|+||||++|+  +|||++||++||+
T Consensus       443 ------~~~~~g~~~~~~EPvFVPrp~~~~~~--~~EDDG~lLs~V~d~~~~~S~LlILDA~~l~--~vArv~LP~rvP~  512 (529)
T 3npe_A          443 ------TKFEYGEGRFGGEPCFVPMDPAAAHP--RGEDDGYVLTFVHDERAGTSELLVVNAADMR--LEATVQLPSRVPF  512 (529)
T ss_dssp             ------EEEECCTTBCCCCCEEEECCSCSSSS--CCTTCEEEEEEEEBSSCCCEEEEEEETTTTE--EEEEEEESSCCCC
T ss_pred             ------EEEEcCCCccccCCEeeeCCCCCCCC--CCCCCcEEEEEEEECCCCcEEEEEEeCCCCc--cceEEECCCCCCC
Confidence                  479999999999999999987    5  7999999999999999999999999999998  7999999999999


Q ss_pred             CCCccccChhhHHHHh
Q 015386          391 GFHGIFLSEEQLEELA  406 (408)
Q Consensus       391 gfHG~w~p~~~~~~~~  406 (408)
                      ||||+|+++++|+.|+
T Consensus       513 GfHG~wv~~~~l~~q~  528 (529)
T 3npe_A          513 GFHGTFITGQELEAQA  528 (529)
T ss_dssp             CSCEEEEEHHHHTTCC
T ss_pred             CccccccCHHHhhhhh
Confidence            9999999999998875

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00