Citrus Sinensis ID: 015387

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MGGLKENINACLIEGASNFQDDVRLGGSKQTMELVQNPRRALSVINQNIWGATIRSNAINKKGLGNGVAHKPNPGLAEAVIGDVEETRDDHTVIDVEDCGDDDGAAVPMFVRHTEAFLDEIDRMDVDELEVTEDPILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHEKAATGKLTGVYRKFNTSKFGHAAKAEPALFLLNNQ
ccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccHHHcHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccc
cccccccccccccccHHHcccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHHccccccHEEEEcccccHHcHEcccccHHHHcccc
MGGLKENINACLIEgasnfqddvrlggskqtmELVQNPRRALSVINQNiwgatirsnainkkglgngvahkpnpglaeavigdveetrddhtvidvedcgdddgaavpMFVRHTEafldeidrmdvdelevtedpildidgrdlknplaVVEYVDDIYAYYRKIEisscvsptymdhqsDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYeevsvpivddfilisdnaytrKEVLDMEKLLLNTLQfnmsvptpYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYkmlkfppsLLAAAAIYTAQCSLYQLKQWtktsewltnypedqlLECSRLMVTLHEKAATGKLTGVYrkfntskfghaakaepalfllnnq
MGGLKENINACLIEGASNFQDDVRLGGSKQTMELVQNPRRALSVINQNIWGATIRSNAINKKGLGNGVAHKPNPGLAEAVIGDVEETRDDHTVIDVEDCGDDDGAAVPMFVRHTEAFLDEIDRMDVDELEVTedpildidgrdlknplAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHEKaatgkltgvYRKFNTSkfghaakaepalfllnnq
MGGLKENINACLIEGASNFQDDVRLGGSKQTMELVQNPRRALSVINQNIWGATIRSNAINKKGLGNGVAHKPNPGLAEAVIGDVEETRDDHTVIDVEDCGDDDGAAVPMFVRHTEAFLDEIDRMDVDELEVTEDPILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHEKAATGKLTGVYRKFNTSKFGHAAKAEPALFLLNNQ
*******INACLIEGASNFQDDV**********LVQNPRRALSVINQNIWGATIRSNAINKKGLGNGVAHK*NPGLAEAVIGDVEETRDDHTVIDVEDCGDDDGAAVPMFVRHTEAFLDEIDRMDVDELEVTEDPILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHEKAATGKLTGVYRKFNTSKFGHAAKAEPALFL****
**************************************************************************************************************************************PILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHEKAATGKLTGVYRKFNTSKFGHAAKAEPALFLL***
MGGLKENINACLIEGASNFQDDVRLGGSKQTMELVQNPRRALSVINQNIWGATIRSNAINKKGLGNGVAHKPNPGLAEAVIGDVEETRDDHTVIDVEDCGDDDGAAVPMFVRHTEAFLDEIDRMDVDELEVTEDPILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHEKAATGKLTGVYRKFNTSKFGHAAKAEPALFLLNNQ
*************************************************W***********************************************************************************DPILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHEKAATGKLTGVYRKFNTSKFGHAAKAEPALFLL***
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGGLKENINACLIEGASNFQDDVRLGGSKQTMELVQNPRRALSVINQNIWGATIRSNAINKKGLGNGVAHKPNPGLAEAVIGDVEETRDDHTVIDVEDCGDDDGAAVPMFVRHTEAFLDEIDRMDVDELEVTEDPILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHEKAATGKLTGVYRKFNTSKFGHAAKAEPALFLLNNQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query408 2.2.26 [Sep-21-2011]
Q9LDM4429 Cyclin-B2-3 OS=Arabidopsi yes no 0.928 0.883 0.556 1e-126
Q9SFW6431 Cyclin-B2-4 OS=Arabidopsi no no 0.973 0.921 0.559 1e-125
P46277428 G2/mitotic-specific cycli N/A no 0.933 0.890 0.564 1e-124
Q0D9C7419 Cyclin-B2-2 OS=Oryza sati yes no 0.948 0.923 0.552 1e-121
A2YH60419 Cyclin-B2-2 OS=Oryza sati N/A no 0.948 0.923 0.552 1e-121
P46278434 G2/mitotic-specific cycli N/A no 0.973 0.914 0.537 1e-119
Q7XSJ6420 Cyclin-B2-1 OS=Oryza sati no no 0.860 0.835 0.571 1e-118
Q01J96423 Cyclin-B2-1 OS=Oryza sati N/A no 0.860 0.829 0.571 1e-118
P30278328 G2/mitotic-specific cycli N/A no 0.737 0.917 0.672 1e-117
Q39068429 Cyclin-B2-1 OS=Arabidopsi no no 0.931 0.885 0.531 1e-105
>sp|Q9LDM4|CCB23_ARATH Cyclin-B2-3 OS=Arabidopsis thaliana GN=CYCB2-3 PE=2 SV=2 Back     alignment and function desciption
 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/406 (55%), Positives = 293/406 (72%), Gaps = 27/406 (6%)

Query: 27  GSKQTMELVQNPRRALSVINQNIWGATIRSNAINKKGLG--NGVAHKP------NPGLAE 78
           G  +T       RRALS IN+NI  A     A+NK+ +   +G+ +KP          A 
Sbjct: 24  GKIKTTATTGPTRRALSTINKNITEAPSYPYAVNKRSVSERDGICNKPPVHRPVTRKFAA 83

Query: 79  AVIGDVEETRDDHT--------------VIDVEDCGDDDG-AAVPMFVRHTEAFLDEIDR 123
            +       RD+ T              +IDV++   + G +  PMFV+HTEA L+EI++
Sbjct: 84  QLADHKPHIRDEETKKPDSVSSEEPETIIIDVDESDKEGGDSNEPMFVQHTEAMLEEIEQ 143

Query: 124 MD----VDELEVTEDPILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQS 179
           M+    +++ +  E+P++DID  D  NPLA VEY+ D++ +Y+  E  SCV P YMD+Q 
Sbjct: 144 MEKEIEMEDADKEEEPVIDIDACDKNNPLAAVEYIHDMHTFYKNFEKLSCVPPNYMDNQQ 203

Query: 180 DINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLA 239
           D+NE+MR ILIDWL+EVHYKFELM+ETL+LTIN++D+FL    +VRKKLQLVGVTA+LLA
Sbjct: 204 DLNERMRGILIDWLIEVHYKFELMEETLYLTINVIDRFLAVHQIVRKKLQLVGVTALLLA 263

Query: 240 CKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQS 299
           CKYEEVSVP+VDD ILISD AY+R+EVLDMEKL+ NTLQFN S+PTPYVFM+RFLKAAQS
Sbjct: 264 CKYEEVSVPVVDDLILISDKAYSRREVLDMEKLMANTLQFNFSLPTPYVFMKRFLKAAQS 323

Query: 300 DKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPED 359
           DKKLE+L+FF++ELCLVEY+ML++ PS LAA+AIYTAQC+L   ++W+KT E+ T Y E 
Sbjct: 324 DKKLEILSFFMIELCLVEYEMLEYLPSKLAASAIYTAQCTLKGFEEWSKTCEFHTGYNEK 383

Query: 360 QLLECSRLMVTLHEKAATGKLTGVYRKFNTSKFGHAAKAEPALFLL 405
           QLL C+R MV  H KA TGKLTGV+RK+NTSKF HAA+ EPA FL+
Sbjct: 384 QLLACARKMVAFHHKAGTGKLTGVHRKYNTSKFCHAARTEPAGFLI 429

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SFW6|CCB24_ARATH Cyclin-B2-4 OS=Arabidopsis thaliana GN=CYCB2-4 PE=2 SV=2 Back     alignment and function description
>sp|P46277|CCNB1_MEDSV G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia PE=2 SV=1 Back     alignment and function description
>sp|Q0D9C7|CCB22_ORYSJ Cyclin-B2-2 OS=Oryza sativa subsp. japonica GN=CYCB2-2 PE=1 SV=1 Back     alignment and function description
>sp|A2YH60|CCB22_ORYSI Cyclin-B2-2 OS=Oryza sativa subsp. indica GN=CYCB2-2 PE=1 SV=2 Back     alignment and function description
>sp|P46278|CCNB2_MEDSV G2/mitotic-specific cyclin-2 OS=Medicago sativa subsp. varia PE=2 SV=1 Back     alignment and function description
>sp|Q7XSJ6|CCB21_ORYSJ Cyclin-B2-1 OS=Oryza sativa subsp. japonica GN=CYCB2-1 PE=1 SV=2 Back     alignment and function description
>sp|Q01J96|CCB21_ORYSI Cyclin-B2-1 OS=Oryza sativa subsp. indica GN=CYCB2-1 PE=1 SV=1 Back     alignment and function description
>sp|P30278|CCNB2_MEDSA G2/mitotic-specific cyclin-2 (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|Q39068|CCB21_ARATH Cyclin-B2-1 OS=Arabidopsis thaliana GN=CYCB2-1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
224102801399 predicted protein [Populus trichocarpa] 0.926 0.947 0.710 1e-154
209865484399 cyclin B [Populus tomentosa] 0.926 0.947 0.700 1e-151
355899004361 CYC7 [Rosa hybrid cultivar] 0.772 0.872 0.779 1e-143
359492732437 PREDICTED: cyclin-B2-4 [Vitis vinifera] 0.995 0.929 0.601 1e-141
302142651441 unnamed protein product [Vitis vinifera] 0.995 0.920 0.598 1e-141
297744569424 unnamed protein product [Vitis vinifera] 0.963 0.926 0.629 1e-140
347361138439 cyclin [Camellia sinensis] 0.990 0.920 0.597 1e-140
255539220438 cyclin B, putative [Ricinus communis] gi 0.995 0.926 0.592 1e-137
225428090373 PREDICTED: G2/mitotic-specific cyclin-1- 0.877 0.959 0.660 1e-136
449512698412 PREDICTED: cyclin-B2-4-like [Cucumis sat 0.987 0.978 0.610 1e-132
>gi|224102801|ref|XP_002312806.1| predicted protein [Populus trichocarpa] gi|222849214|gb|EEE86761.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/394 (71%), Positives = 324/394 (82%), Gaps = 16/394 (4%)

Query: 18  NFQDDVRLGGSKQTMELVQNPRRALSVINQNIWGATIRSNAINKKGLGNGVAHKPNPGLA 77
           N Q+  RLGGSK   ++  N RRAL+ INQNI GA      +NK+     +A       A
Sbjct: 16  NLQEGPRLGGSKFVKDMGLNQRRALASINQNIVGAAHFPCVVNKRDSSEEMA-------A 68

Query: 78  EAVIGD---VEETRD--DHTVIDVEDCGDDDGAAVPMFVRHTEAFLDEIDRMDVDELEVT 132
           E V       EETR   D +VI+VE+  D   AA+PMFV+HTEA LDEIDRM+V E+E  
Sbjct: 69  EMVSNKQQCYEETRKSKDCSVIEVEEYDD---AAIPMFVKHTEAMLDEIDRMEV-EMEDA 124

Query: 133 EDPILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDW 192
           ED I+DID  DLK+ LAVVEY+DDIYAYY+K E S CVSPTYMD QSDINEKMRAILIDW
Sbjct: 125 EDSIVDIDCGDLKDTLAVVEYIDDIYAYYKKSESSGCVSPTYMDRQSDINEKMRAILIDW 184

Query: 193 LLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDD 252
           L++VHYKFELMDETLFL IN++D+FLER  VVRKKLQLVGVTAMLLACKYEEVSVP+V+D
Sbjct: 185 LIKVHYKFELMDETLFLAINLIDRFLERCTVVRKKLQLVGVTAMLLACKYEEVSVPLVED 244

Query: 253 FILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVE 312
           F+LISDNAYTR EVLDMEKL++NTLQFNMSVPTPY+FM+RFLKAA SDKKLELL+FFI+E
Sbjct: 245 FVLISDNAYTRIEVLDMEKLMVNTLQFNMSVPTPYMFMKRFLKAALSDKKLELLSFFIIE 304

Query: 313 LCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLH 372
           +CLVEY+ML+FPPSLLAAAAIYTAQCSLYQ KQW+KTSEW T+Y EDQLLECSR+MV+ H
Sbjct: 305 VCLVEYEMLRFPPSLLAAAAIYTAQCSLYQFKQWSKTSEWHTSYTEDQLLECSRMMVSFH 364

Query: 373 EKAATGKLTGVYRKFNTSKFGHAAKAEPALFLLN 406
           +KA  GKLTGV+RK++TSKFG+AAKAEPALFLL 
Sbjct: 365 QKAGYGKLTGVHRKYSTSKFGYAAKAEPALFLLG 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|209865484|gb|ACI89426.1| cyclin B [Populus tomentosa] Back     alignment and taxonomy information
>gi|355899004|gb|AET07179.1| CYC7 [Rosa hybrid cultivar] Back     alignment and taxonomy information
>gi|359492732|ref|XP_002280079.2| PREDICTED: cyclin-B2-4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142651|emb|CBI19854.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744569|emb|CBI37831.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|347361138|gb|AEO86797.1| cyclin [Camellia sinensis] Back     alignment and taxonomy information
>gi|255539220|ref|XP_002510675.1| cyclin B, putative [Ricinus communis] gi|223551376|gb|EEF52862.1| cyclin B, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225428090|ref|XP_002278139.1| PREDICTED: G2/mitotic-specific cyclin-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449512698|ref|XP_004164118.1| PREDICTED: cyclin-B2-4-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
TAIR|locus:2030482429 CYCB2;3 "Cyclin B2;3" [Arabido 0.823 0.783 0.614 1.8e-116
TAIR|locus:2014574431 CYCB2;4 "CYCLIN B2;4" [Arabido 0.764 0.723 0.657 4.2e-115
TAIR|locus:2057243429 CYCB2;1 "Cyclin B2;1" [Arabido 0.762 0.724 0.603 1.2e-97
TAIR|locus:2127948429 CYCB2;2 "Cyclin B2;2" [Arabido 0.703 0.668 0.617 4.2e-95
TAIR|locus:2160722445 CYC1BAT [Arabidopsis thaliana 0.671 0.615 0.472 9.2e-68
TAIR|locus:2080717414 CYCB1;3 "CYCLIN B1;3" [Arabido 0.656 0.647 0.483 7.4e-66
TAIR|locus:2043818387 CYCB1;4 "Cyclin B1;4" [Arabido 0.644 0.679 0.473 2e-63
TAIR|locus:2030457265 AT1G20590 [Arabidopsis thalian 0.421 0.649 0.709 8.8e-63
TAIR|locus:2126377428 CYCB1;1 "CYCLIN B1;1" [Arabido 0.666 0.635 0.440 7.3e-59
DICTYBASE|DDB_G0275493436 cycB "G2/M-specific cyclinB" [ 0.654 0.612 0.446 1.2e-58
TAIR|locus:2030482 CYCB2;3 "Cyclin B2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1097 (391.2 bits), Expect = 1.8e-116, Sum P(2) = 1.8e-116
 Identities = 210/342 (61%), Positives = 270/342 (78%)

Query:    70 HKPNPGLAEAVIGDVEETRDDHTVI-DVEDCGDDDGAA-VPMFVRHTEAFLDEIDRMD-- 125
             HKP+    E    D   + +  T+I DV++   + G +  PMFV+HTEA L+EI++M+  
Sbjct:    88 HKPHIRDEETKKPDSVSSEEPETIIIDVDESDKEGGDSNEPMFVQHTEAMLEEIEQMEKE 147

Query:   126 --VDELEVTEDPILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINE 183
               +++ +  E+P++DID  D  NPLA VEY+ D++ +Y+  E  SCV P YMD+Q D+NE
Sbjct:   148 IEMEDADKEEEPVIDIDACDKNNPLAAVEYIHDMHTFYKNFEKLSCVPPNYMDNQQDLNE 207

Query:   184 KMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYE 243
             +MR ILIDWL+EVHYKFELM+ETL+LTIN++D+FL    +VRKKLQLVGVTA+LLACKYE
Sbjct:   208 RMRGILIDWLIEVHYKFELMEETLYLTINVIDRFLAVHQIVRKKLQLVGVTALLLACKYE 267

Query:   244 EVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKL 303
             EVSVP+VDD ILISD AY+R+EVLDMEKL+ NTLQFN S+PTPYVFM+RFLKAAQSDKKL
Sbjct:   268 EVSVPVVDDLILISDKAYSRREVLDMEKLMANTLQFNFSLPTPYVFMKRFLKAAQSDKKL 327

Query:   304 ELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLE 363
             E+L+FF++ELCLVEY+ML++ PS LAA+AIYTAQC+L   ++W+KT E+ T Y E QLL 
Sbjct:   328 EILSFFMIELCLVEYEMLEYLPSKLAASAIYTAQCTLKGFEEWSKTCEFHTGYNEKQLLA 387

Query:   364 CSRLMVTLHEKAATGKLTGVYRKFNTSKFGHAAKAEPALFLL 405
             C+R MV  H KA TGKLTGV+RK+NTSKF HAA+ EPA FL+
Sbjct:   388 CARKMVAFHHKAGTGKLTGVHRKYNTSKFCHAARTEPAGFLI 429
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2014574 CYCB2;4 "CYCLIN B2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057243 CYCB2;1 "Cyclin B2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127948 CYCB2;2 "Cyclin B2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160722 CYC1BAT [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080717 CYCB1;3 "CYCLIN B1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043818 CYCB1;4 "Cyclin B1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030457 AT1G20590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126377 CYCB1;1 "CYCLIN B1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275493 cycB "G2/M-specific cyclinB" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46278CCNB2_MEDSVNo assigned EC number0.53730.97300.9147N/Ano
P46277CCNB1_MEDSVNo assigned EC number0.56440.93380.8901N/Ano
A2YH60CCB22_ORYSINo assigned EC number0.55280.94850.9236N/Ano
Q9LDM4CCB23_ARATHNo assigned EC number0.55660.92890.8834yesno
Q01J96CCB21_ORYSINo assigned EC number0.57100.86020.8297N/Ano
Q0D9C7CCB22_ORYSJNo assigned EC number0.55280.94850.9236yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IX0044
hypothetical protein (400 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pm.C_LG_V0721
hypothetical protein (306 aa)
      • 0.702

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 2e-68
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 7e-62
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 8e-44
cd0004388 cd00043, CYCLIN, Cyclin box fold 9e-24
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 1e-20
cd0004388 cd00043, CYCLIN, Cyclin box fold 5e-17
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 7e-17
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 7e-08
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score =  222 bits (568), Expect = 2e-68
 Identities = 99/260 (38%), Positives = 149/260 (57%), Gaps = 3/260 (1%)

Query: 138 DIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVH 197
           D+D  D ++PL V EY  DI+ Y  K+E+    +P Y+  QS     MR+IL+DWL+EVH
Sbjct: 165 DLDATDQEDPLMVPEYASDIFEYLLKLELIDLPNPNYLIKQSLYEWSMRSILVDWLVEVH 224

Query: 198 YKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILIS 257
            KF L+ ETLFL INI+D+FL  +VV  +K QLVG++A+ +A KYEEV+ P + D +  +
Sbjct: 225 GKFGLLPETLFLAINIIDRFLSSRVVSLEKYQLVGISALFIASKYEEVNCPSIKDLVYAT 284

Query: 258 DNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVE 317
           D A+TR +++  E+ +L  L FN+S P+P  F+RR  KA+  D      A F  E+  V+
Sbjct: 285 DGAFTRDDIIRAERYMLEVLDFNISWPSPMSFLRRISKASDYDIFSRTPAKFSSEISPVD 344

Query: 318 YKMLKFPPSLLAAAAIYTAQCSLYQLKQW-TKTSEWLTNYPEDQLLECSRLMVTLHEKAA 376
           YK ++  PS  AAAA+Y ++  L Q  QW      +  NY    L   +       +   
Sbjct: 345 YKFIQISPSWCAAAAMYLSRKILSQ-NQWDRTLIHYSGNYTNPDLKPLNESNKENLQN-P 402

Query: 377 TGKLTGVYRKFNTSKFGHAA 396
           +     ++ K+ +  FG A+
Sbjct: 403 SVHHDAIFPKYPSPTFGKAS 422

Length = 440
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 408
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.93
TIGR00569305 ccl1 cyclin ccl1. University). 99.9
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.88
KOG0835 367 consensus Cyclin L [General function prediction on 99.86
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.85
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.78
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.76
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.72
KOG1597308 consensus Transcription initiation factor TFIIB [T 99.51
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.49
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.46
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.43
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.28
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.85
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.77
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 98.51
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.47
KOG1598 521 consensus Transcription initiation factor TFIIIB, 98.1
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.41
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.27
PRK00423310 tfb transcription initiation factor IIB; Reviewed 96.41
KOG1674218 consensus Cyclin [General function prediction only 94.99
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 93.71
KOG1675343 consensus Predicted cyclin [General function predi 92.51
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 91.34
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 90.67
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 87.12
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 86.63
KOG1597308 consensus Transcription initiation factor TFIIB [T 83.64
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-46  Score=381.81  Aligned_cols=262  Identities=48%  Similarity=0.791  Sum_probs=243.8

Q ss_pred             CccCCCCCCCCCccchhhhHHHHHHHHHHhHhhcCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 015387          135 PILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIV  214 (408)
Q Consensus       135 ~~~did~~d~~~p~~~~eY~~dI~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~  214 (408)
                      ++.|+|..|..+|+++.+|++|||.|++..|.. ..+..|+..|.+++++||.+++|||++||.+|+|.+||+|+||+++
T Consensus       108 ~~~dl~~~d~~~~~~~~ey~~di~~~l~~~e~~-~~p~~~~~~~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaVnli  186 (391)
T KOG0653|consen  108 SILDLDSEDKSDPSMIVEYVQDIFEYLRQLELE-FLPLSYDISQSEIRAKMRAILVDWLVEVHEKFGLSPETLYLAVNLI  186 (391)
T ss_pred             CccCcchhcccCcHHHHHHHHHHHHHHHHHHHh-hCchhhhcccccccHHHHHHHHHHHHHhhhhcCcCHHHHHHHHHHH
Confidence            699999999999999999999999999999963 3445667889999999999999999999999999999999999999


Q ss_pred             HhhhhcccccccchhhhHhHHHH-hhhhccccCCcchhhHHhhhccccCHHHHHHHHHHHHHHcCCccccCcchhHHHHH
Q 015387          215 DKFLERQVVVRKKLQLVGVTAML-LACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRF  293 (408)
Q Consensus       215 DRfLs~~~v~~~~lqLva~acL~-IAsK~EE~~~p~i~dlv~is~~~yt~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~f  293 (408)
                      ||||++..+.++++||+|++||| |||||||..+|.++|++.++++.||+++|++||+.||++|+|++++|+|+.||++|
T Consensus       187 DRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~il~~L~f~l~~p~~~~FLrr~  266 (391)
T KOG0653|consen  187 DRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREEILRMEKYILNVLEFDLSVPTPLSFLRRF  266 (391)
T ss_pred             HHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHHHHHHHHHHHhccCeeecCCchHHHHHHH
Confidence            99999999999999999999976 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhcCCCHHHHHHHHHHHHHHHh
Q 015387          294 LKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHE  373 (408)
Q Consensus       294 l~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~tgys~~~L~~c~~~L~~l~~  373 (408)
                      +++...+.+.+.++++++|++++|+.++.++||.+|+|++++++.+......|+..+.+++||+..++.+|.+.+..++.
T Consensus       267 ~ka~~~d~~~~~~~k~~~El~l~d~~~~~~~~s~~aaa~~~~~~~~~~~~~~w~~~~~~~sg~~~~~~~~~~~~~~~~~~  346 (391)
T KOG0653|consen  267 LKAADYDIKTRTLVKYLLELSLCDYSMLSIPPSSSAAASFTLALRMLSKGDVWSPTLEHYSGYSESYLFECARSLSALSL  346 (391)
T ss_pred             HHhhhcchhHHHHHHHHHHHHHhhhHHhccCcHHHHHHHHHHHHHHhccCCccCCCCeeccCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999877654479999999999999999999999998665


Q ss_pred             hcCC-CCchh-hhcccCCcccccccc
Q 015387          374 KAAT-GKLTG-VYRKFNTSKFGHAAK  397 (408)
Q Consensus       374 ~~~~-~~~~~-i~~KYss~~f~~vs~  397 (408)
                      .... ....+ +++||++++|..++.
T Consensus       347 ~~~~~~~~~~~~~~ky~~~~~~~~~~  372 (391)
T KOG0653|consen  347 SSLQNPSLRASVLNKYNSSKFLPASP  372 (391)
T ss_pred             HhcccchhHHHHHHHhcccccchhhh
Confidence            4433 34554 999999999999983

>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 1e-45
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 2e-44
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 1e-40
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 1e-40
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 1e-40
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 3e-40
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 4e-40
1vin_A268 Bovine Cyclin A3 Length = 268 4e-40
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 5e-40
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 5e-40
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 5e-40
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 5e-40
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 5e-40
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 6e-40
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 7e-40
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 7e-40
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 8e-40
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 8e-40
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 9e-40
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 9e-40
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 2e-39
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 2e-39
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 8e-19
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 9e-14
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 1e-12
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 1e-12
2i53_A258 Crystal Structure Of Cyclin K Length = 258 4e-06
1jow_A254 Crystal Structure Of A Complex Of Human Cdk6 And A 4e-06
1bu2_A229 X-Ray Structure Of A Viral Cyclin From Herpesvirus 5e-06
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure 
Iteration: 1

 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/243 (39%), Positives = 149/243 (61%), Gaps = 6/243 (2%)
Query: 152 EYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTI 211
           EYV DIYAY R++E +  V P Y+  + ++   MRAILIDWL++V  KF L+ ET+++T+
Sbjct: 5   EYVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTV 63
Query: 212 NIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEK 271
           +I+D+F++   V +K LQLVGVTAM +A KYEE+  P + DF  ++DN YT+ ++  ME 
Sbjct: 64  SIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEM 123
Query: 272 LLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAA 331
            +L  L F +  P P  F+RR  K  + D +   LA +++EL +++Y M+ FPPS +AA 
Sbjct: 124 KILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAG 183
Query: 332 AIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLM---VTLHEKAATGKLTGVYRKFN 388
           A ++    +    +WT T +   +Y E+ LL   + +   V +  +  T  +T V  K+ 
Sbjct: 184 A-FSLALKILDNGEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMT-VKNKYA 241
Query: 389 TSK 391
           TSK
Sbjct: 242 TSK 244
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K Length = 258 Back     alignment and structure
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 254 Back     alignment and structure
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri Length = 229 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-124
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 1e-121
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-112
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 1e-108
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-107
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 1e-107
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 1e-100
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 2e-91
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 1e-36
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 7e-22
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 1e-19
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 3e-17
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 4e-17
2ivx_A257 Cyclin-T2; transcription regulation, cell division 4e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
 Score =  358 bits (922), Expect = e-124
 Identities = 94/257 (36%), Positives = 147/257 (57%), Gaps = 3/257 (1%)

Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
           V +Y +DI+ Y R++E+       YM  Q DI   MRAIL+DWL+EV  +++L +ETL L
Sbjct: 3   VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62

Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
            +N +D+FL    V+R KLQLVG  AMLLA K+EE+  P V +F+ I+D+ YT+K+VL M
Sbjct: 63  AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122

Query: 270 EKLLLNTLQFNMSVPTPYVFMRRFL-KAAQSDKKLELLAFFIVELCLVEYK-MLKFPPSL 327
           E L+L  L F+++ PT   F+ ++      ++ K+E LA F+ EL L++    LK+ PS+
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 182

Query: 328 LAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHEKAATGKLTGVYRKF 387
           +A AA + A  ++   + W ++    T Y  + L  C   +   + KA       +  K+
Sbjct: 183 IAGAAFHLALYTV-TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 241

Query: 388 NTSKFGHAAKAEPALFL 404
             SK+   +   P   L
Sbjct: 242 KNSKYHGVSLLNPPETL 258
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.96
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.93
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.83
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.61
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.27
1ais_B200 TFB TFIIB, protein (transcription initiation facto 97.3
1c9b_A207 General transcription factor IIB; protein-DNA comp 96.26
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 94.04
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 93.58
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 92.14
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 91.88
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 90.62
2ivx_A257 Cyclin-T2; transcription regulation, cell division 90.61
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 90.54
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 90.27
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 90.01
3rgf_B 285 Cyclin-C; protein kinase complex, transferase,tran 89.77
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 88.35
1w98_B 283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 88.3
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 87.93
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 87.23
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 86.44
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 85.43
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 85.14
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
Probab=100.00  E-value=2.7e-56  Score=429.69  Aligned_cols=255  Identities=37%  Similarity=0.608  Sum_probs=245.6

Q ss_pred             chhhhHHHHHHHHHHhHhhcCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccccch
Q 015387          149 AVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKL  228 (408)
Q Consensus       149 ~~~eY~~dI~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~l  228 (408)
                      .|+||++|||+||++.|.++.++++||..|++|++.||.+++|||++++..|+++++|+++|++|+|||+++..+.+.++
T Consensus         2 ~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~l   81 (260)
T 2cch_B            2 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL   81 (260)
T ss_dssp             CCCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             chHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcH-HHHHHH
Q 015387          229 QLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDK-KLELLA  307 (408)
Q Consensus       229 qLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~-~~~~la  307 (408)
                      |++|+||||||||+||..+|++++++.++++.|++++|.+||+.||++|+|++++|||++|+.+|++.++.+. ++..+|
T Consensus        82 qlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a  161 (260)
T 2cch_B           82 QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLA  161 (260)
T ss_dssp             HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998654 899999


Q ss_pred             HHHHHHHhcccc-ccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCCCchhhhcc
Q 015387          308 FFIVELCLVEYK-MLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHEKAATGKLTGVYRK  386 (408)
Q Consensus       308 ~~llelsl~d~~-~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~tgys~~~L~~c~~~L~~l~~~~~~~~~~~i~~K  386 (408)
                      ++++++++.++. +++|+||.||||||++|+..++. +.|...+..++||++++|.+|++.|.+++.++...++++|++|
T Consensus       162 ~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~K  240 (260)
T 2cch_B          162 MFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREK  240 (260)
T ss_dssp             HHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHH
T ss_pred             HHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            999999999999 99999999999999999988765 7899999999999999999999999999988888889999999


Q ss_pred             cCCccccccccCCcchhh
Q 015387          387 FNTSKFGHAAKAEPALFL  404 (408)
Q Consensus       387 Yss~~f~~vs~~~p~~~l  404 (408)
                      |++++|+.||+++|++.|
T Consensus       241 y~~~~~~~vs~~~~~~~~  258 (260)
T 2cch_B          241 YKNSKYHGVSLLNPPETL  258 (260)
T ss_dssp             HTSGGGTTGGGSCCCSCC
T ss_pred             HCcccccceeCCCCcccC
Confidence            999999999999999876
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 408
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 2e-47
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 7e-47
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 2e-43
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 3e-41
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 8e-41
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 6e-38
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 1e-31
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 2e-26
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 1e-22
d2ivxa2113 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapien 3e-04
d1w98b1130 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Huma 0.004
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin A
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  156 bits (395), Expect = 2e-47
 Identities = 61/127 (48%), Positives = 87/127 (68%)

Query: 156 DIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVD 215
           DI+ Y R++E+       YM  Q DI   MRAIL+DWL+EV  +++L +ETL L +N +D
Sbjct: 1   DIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 60

Query: 216 KFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLN 275
           +FL    V+R KLQLVG  AMLLA K+EE+  P V +F+ I+D+ YT+K+VL ME L+L 
Sbjct: 61  RFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLK 120

Query: 276 TLQFNMS 282
            L F+++
Sbjct: 121 VLTFDLA 127
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.97
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.97
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.95
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.9
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.81
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.77
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.76
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.73
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.58
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.44
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.39
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.29
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.12
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.92
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 97.9
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.82
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.78
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 97.55
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.49
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.95
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 93.67
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 91.25
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 89.76
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 89.5
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 89.35
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 88.64
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 88.12
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 87.6
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 83.48
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-34  Score=246.99  Aligned_cols=137  Identities=28%  Similarity=0.570  Sum_probs=132.2

Q ss_pred             CccchhhhHHHHHHHHHHhHhhcCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcc-ccc
Q 015387          146 NPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQ-VVV  224 (408)
Q Consensus       146 ~p~~~~eY~~dI~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~-~v~  224 (408)
                      .|.++..|.+|||.+|+++|.++.++++|+.+|++++++||.+++|||++++..++++++|+|+||+|||||++.. .+.
T Consensus         3 ~p~~~~~~~~dI~~~l~~~E~~~~~~~~~l~~q~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~~v~   82 (140)
T d1w98b2           3 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVV   82 (140)
T ss_dssp             SCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CccccccCHHHHHHHHHHHHHhhCCChHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhcccccc
Confidence            5889999999999999999999988999999999999999999999999999999999999999999999999855 489


Q ss_pred             ccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHHHHHHHHHHHHcCCccc
Q 015387          225 RKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMS  282 (408)
Q Consensus       225 ~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI~~mE~~IL~~L~f~l~  282 (408)
                      ++++||+|+|||+||||+||..+|.+++++.++++.|++++|.+||+.||++|+|+++
T Consensus        83 ~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2          83 KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence            9999999999999999999999999999999999999999999999999999999985
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure