Citrus Sinensis ID: 015392

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MMLQMHSSSSFSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHcccccccccEEEEEEccEEccccccEEEEEEccccEEEEEEEEEEcccccEEccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHEEEEHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHEEccccccHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEHccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mmlqmhssssfspkyyyplqhagcdktlqlpltkvhgglnrsesknyaikctqsdsfystnkiknnentssrnckpfnkYRVAVTLQQqgcasnneddinstSFWDVLLKKLHALYVftrpfamigTIVGITSIailplqsfadltPKYFMEFLKALLSAVLMNNYVGTVNQVADVeidkvnkpdlplasgdlsmgTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGtaysvdlpflrwktkpflagmCMVTVFGLVYQFSFFIHFQKyvlgrpvvitRPLIFAAAIISTISAVMSLLkdipdedgdkqfgfqsissklgkenVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVdlsnnastysFYMFIWKLFYAEYLLIHFLR
Flexible Loop (DISEMBL)
mmlqmhssssfspKYYYPLQHAGCDKTLQLPLTKVHGglnrsesknyaikctqsdsfystnkiknnentssrnckpFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSissklgkenVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Low Complexity Region (SEG)
MMLQMHssssfsPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGlaitltlsltslaialslQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLifaaaiistisaVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Disordered region (IsUnstruct)
*************KYYYPLQHAGCDKTLQLPLTKVHGGLN*****NYAIKCT**********************KPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDE***KQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFL*
Disordered Region (DISOPRED)
***************************LQLPLT***************************************************************************LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Disordered Region (DISEMBL)
***********SPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Disordered Region (DISPRO)
**********FSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQ***********STSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLQMHSSSSFSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.882	0.916	0.434	1e-80
B7FA90	404	Probable homogentisate ph	no	no	0.914	0.923	0.402	5e-79
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.848	0.843	0.381	5e-67
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.757	0.755	0.394	2e-59
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.784	0.829	0.307	8e-30
Q0D576	379	Probable homogentisate ph	no	no	0.691	0.744	0.287	1e-24
A3CW74	279	Digeranylgeranylglyceryl	yes	no	0.387	0.566	0.298	2e-06
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.475	0.690	0.266	2e-06
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.475	0.642	0.263	3e-06
Q9UWY6	282	Digeranylgeranylglyceryl	yes	no	0.426	0.617	0.252	4e-06

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  300 bits (768), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 162/373 (43%), Positives = 235/373 (63%), Gaps = 13/373 (3%)

Query: 42  SESKNYAIKCTQSDSF----YSTNKIKNNENTSSRNCKPFNK--YRVAVTLQQQGCASNN 95
           S S+   ++C  S       +  N ++ +   SS    P +K  +RV  T  Q     +N
Sbjct: 28  SLSEIRVLRCDSSKVVAKPKFRNNLVRPDGQGSSLLLYPKHKSRFRVNATAGQPEAFDSN 87

Query: 96  EDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLK 155
                  SF D     L A Y F+RP  +IGT++ I S++ L ++  +D++P  F   L+
Sbjct: 88  SKQ---KSFRD----SLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILE 140

Query: 156 ALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALS 215
           A+++A++MN Y+  +NQ++DVEIDKVNKP LPLASG+ S+ TG+AI  + S+ S  +   
Sbjct: 141 AVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWI 200

Query: 216 LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 275
           + S PL + L V F+LGTAYS++LP LRWK    +A MC++ V  ++ Q +F++H Q +V
Sbjct: 201 VGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHV 260

Query: 276 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVY 335
            GRP++ TRPLIFA A +S  S V++L KDIPD +GDK FG +S S  LG++ V   CV 
Sbjct: 261 FGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVT 320

Query: 336 ALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
            L  AY V+++VGA+S F   K++S++GH  LA  LW RA++VDLS+     S YMFIWK
Sbjct: 321 LLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWK 380

Query: 396 LFYAEYLLIHFLR 408
           LFYAEYLL+ FL+
Sbjct: 381 LFYAEYLLLPFLK 393

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  295 bits (755), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 152/378 (40%), Positives = 235/378 (62%), Gaps = 5/378 (1%)

Query: 31  PLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQG 90
           PL  +H    R  S +   + TQ  SF    K    +++  R   P      +     Q 
Sbjct: 32  PLCSIHRNGKRPVSLSS--QRTQGPSFDQCQKFFGWKSSHHR--IPHRPTSSSADASGQP 87

Query: 91  CASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYF 150
             S+ E   +S+S W  +   L A Y F+RP  +IGT + I S+++L +++ +D++P + 
Sbjct: 88  LQSSAEAH-DSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSLLAVENLSDVSPLFL 146

Query: 151 MEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSL 210
              L+A+++A+ MN Y+  +NQ+ D+EIDKVNKP LPLASG+ S  TG+A+    +  S 
Sbjct: 147 TGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSF 206

Query: 211 AIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270
            +  ++ S PL   L + F+LGTAYS++LPFLRWK    +A +C++ V  ++ Q +FF+H
Sbjct: 207 GLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLH 266

Query: 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL 330
            Q +V  RP V TRPLIFA A ++  S V++L KDIPD +GD+ FG +S S +LG++ V 
Sbjct: 267 IQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVF 326

Query: 331 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY 390
            +CV  L  AY V++++GA+S+    K  +++GH+ LA +LW R++++DL++  +  SFY
Sbjct: 327 WICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFY 386

Query: 391 MFIWKLFYAEYLLIHFLR 408
           MFIWKLFYAEYLLI  +R
Sbjct: 387 MFIWKLFYAEYLLIPLVR 404

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  255 bits (651), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 134/351 (38%), Positives = 207/351 (58%), Gaps = 5/351 (1%)

Query: 58  YSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYV 117
           Y  N+  +  NTS + C+   KY V    +Q         D    S WD +   L   Y 
Sbjct: 65  YKVNEGGSTSNTS-KECE--KKYVVNAISEQSFEYEPQTRD--PESIWDSVNDALDIFYK 119

Query: 118 FTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 177
           F RP+AM   ++G T  +++ ++  +DL+  +F+ +L+ +++ + ++ +   +NQ+ D+E
Sbjct: 120 FCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIE 179

Query: 178 IDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSV 237
           IDK+NKPDLPLASG LS    + IT +  +  L  A  + S PL + + +  ++ +AY+V
Sbjct: 180 IDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNV 239

Query: 238 DLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTIS 297
           DLP LRWK  P L  +  +    +     FF+H Q  V  RP    RPLIF  AI+S  +
Sbjct: 240 DLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYA 299

Query: 298 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVK 357
            V++L KDIPD +GD++FG QS+S +LG + V  +CV  L   YGV+++VGA+S     K
Sbjct: 300 IVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSK 359

Query: 358 LVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 408
           +++++GH+ LA +LW  A++VDL++N   +SFYMFIWKL  AEY LI   R
Sbjct: 360 IITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYFLIPLFR 410

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  229 bits (585), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/309 (39%), Positives = 183/309 (59%)

Query: 100 NSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLS 159
           N  +  D +   L A Y F+ P+ MIG  +   S ++L ++  +D++  + +  L+ +L 
Sbjct: 101 NPKNILDSVKNVLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLP 160

Query: 160 AVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSP 219
            + +  Y+  VNQ+ D+EIDK+NKP LP+ASG  S  TG+ I+      S        S 
Sbjct: 161 QLFIEIYLCGVNQLYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSW 220

Query: 220 PLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRP 279
           PLI  L+V     TAYS+D+P LRWK  PF+A MCM++ + L    S+F H Q  VL RP
Sbjct: 221 PLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRP 280

Query: 280 VVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339
           +   R L F  A ++  S  ++L KDIPD +GDK+ G  S + +LG++    +CV     
Sbjct: 281 IGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEM 340

Query: 340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYA 399
           A+GV ++ GAS S    K+ + +G++ LA +LW +A++VDLS+ AST SFYMFIWKL YA
Sbjct: 341 AFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWKLLYA 400

Query: 400 EYLLIHFLR 408
            + L+  +R
Sbjct: 401 GFFLMALIR 409

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  131 bits (330), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 170/335 (50%), Gaps = 15/335 (4%)

Query: 78  NKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAIL 137
           N  ++++    Q  A+ ++D +      D + +  +A + F RP  + GT +G T++   
Sbjct: 62  NYRKISIRACSQVGAAESDDPV-----LDRIARFQNACWRFLRPHTIRGTALGSTALVTR 116

Query: 138 PLQSFADLTP-KYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMG 196
            L     L      ++ L  LL+ +  N Y+  +NQ+ D+ IDKVNKP LP+A+GDLS+ 
Sbjct: 117 ALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQ 176

Query: 197 TGLAITLTLSLTSLAIALSLQSPPLIFGLI-VWFLLGTAYSVDLPFLRWKTKPFLAGMCM 255
           +   + +  ++  L + +     P I  L  +   LGT YSV  P LR K  P  A + +
Sbjct: 177 SAWLLVIFFAIAGL-LVVGFNFGPFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLII 233

Query: 256 VTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQF 315
            TV G +  F  + H  +  LG P   + P+ F  + ++  + V+++ KD+PD +GD++F
Sbjct: 234 ATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKF 292

Query: 316 GFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVK-LVSIIGHSTLAFLLWLR 374
              ++++KLG  N+  L    L   Y VS I  A    Q+ +  + I  H  LA  L  +
Sbjct: 293 QISTLATKLGVRNIAFLGSGLLLVNY-VSAISLAFYMPQVFRGSLMIPAHVILASGLIFQ 351

Query: 375 AQTVDLSN--NASTYSFYMFIWKLFYAEYLLIHFL 407
              ++ +N    +   +Y FIW LFYAEYLL  FL
Sbjct: 352 TWVLEKANYTKEAISGYYRFIWNLFYAEYLLFPFL 386

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 142/292 (48%), Gaps = 10/292 (3%)

Query: 116 YVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFM-EFLKALLSAVLMNNYVGTVNQVA 174
           + F RP  + GT +G  ++    L     L   + + +    L++ +  N Y+  +NQ+ 
Sbjct: 88  WRFLRPHTIRGTALGSIALVARALIENPQLINWWLVFKAFYGLVALICGNGYIVGINQIY 147

Query: 175 DVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTA 234
           D+ IDKVNKP LP+A+GDLS+ T   + +  +    +I ++   P +     +   LGT 
Sbjct: 148 DIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVTNFGPFITSLYCLGLFLGTI 207

Query: 235 YSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIIS 294
           YSV  P  R K  P  A + + TV G +  F  + +  +  LG     + P+ F    ++
Sbjct: 208 YSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATRAALGLTFQWSSPVAFITCFVT 264

Query: 295 TISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQ 354
             + V+++ KD+PD +GD+++   ++++KLG  N+  L    L   Y  ++ V       
Sbjct: 265 LFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFLMPQA 324

Query: 355 LVKLVSIIGHSTLA----FLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYL 402
             + V +  H+ LA    F  W+  Q     +  S Y  Y FIW LFYAEY+
Sbjct: 325 FRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQY--YRFIWNLFYAEYI 374

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_1697 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 23/181 (12%)

Query: 147 PKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLS 206
           P   +  + AL++A    N    +N V DVEID++N+PD P+ +GD+S+    A    L 
Sbjct: 36  PSLLLAVIVALITA--GGN---VINDVRDVEIDRINRPDRPIPAGDISLAGARAYAAALF 90

Query: 207 LTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF- 265
           +  +AIA    +  L   +I   +L   Y+V     R K  P L  + +  + G V+ F 
Sbjct: 91  VGGIAIATLTTTLCLAIAIINSVIL-IVYAV-----RLKRTPVLGNVAVAYLAGSVFLFG 144

Query: 266 SFFIHFQKYVLGRPVVITRPLIFAA-AIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL 324
             F   +  V        R L  AA   ++TI+    LLKD  D DGD   G +++   +
Sbjct: 145 GAFAGIEGLV--------RNLSLAAITFLATIA--RELLKDAEDVDGDAAGGARTLPMIV 194

Query: 325 G 325
           G
Sbjct: 195 G 195

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) (taxid: 368407)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 24/218 (11%)

Query: 109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVG 168
           + KL A    +RP   + +I+G        L  + + T  Y    + A L   L+     
Sbjct: 1   MGKLGAYVEISRPKNALMSILG-------TLTGWVNSTSVYDGRLILACLIPPLVLMAGN 53

Query: 169 TVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVW 228
            +N   D EID +NKP  P+ SG +S    L I + LSL    IALS      IF   + 
Sbjct: 54  AINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSL--FGIALS------IFLGFIE 105

Query: 229 FLLGTAYSVD-LPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLI 287
           FL+ TA+S+    + RW  +  + G  +V++       +F + F     G    +T  +I
Sbjct: 106 FLIVTAFSLSWYAYARWLKRTGVPGNALVSL-----GVAFTLIFGSLAAGN---LTNKVI 157

Query: 288 FAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLG 325
             +++  T + +   +K + D  GD+  G ++I+ ++G
Sbjct: 158 IFSSVAFTSNLIREFVKAVEDLPGDRAHGVRTIAVRIG 195

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 22/216 (10%)

Query: 128 IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLP 187
           + G  S+ I P +       K+ +  L  +L+  L+       N   D  +D VN+PD P
Sbjct: 35  LCGTVSVGIWPGE-------KWPLVLLGMVLAGPLVCGMSQAANNWCDRHVDAVNEPDRP 87

Query: 188 LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGT-AYSVDLPFLRWKT 246
           + SG +    GL I L +++ SLA+   L   P  FG  V+ +L   AYSV+   L+ ++
Sbjct: 88  IPSGRIPGRWGLYIALLMTVLSLAVGWMLG--PWGFGATVFGVLAAWAYSVEPIRLK-RS 144

Query: 247 KPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRP--VVITRPLIFAAAIISTISAVMSLLK 304
             +  G+  +   GL     +F        G P   ++T  L++A      ++     L 
Sbjct: 145 GWWGPGLVALCYEGL----PWFTGAAVLSAGAPSFFIVTVALLYAFGAHGIMT-----LN 195

Query: 305 DIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340
           D    +GD+Q G +S+   LG E   +L    +  A
Sbjct: 196 DFKALEGDRQHGVRSLPVMLGPEVAAKLACTVMAMA 231

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|Q9UWY6|DGGGP_SULSO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ubiA-2 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 20/194 (10%)

Query: 145 LTPKYFMEFLKALLSAVLMN-----NYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGL 199
           ++ ++++E    LLSA+++       YV  +N V DVEIDK+NKP  P+ SG +S+    
Sbjct: 28  VSSQWYLELKGILLSALVVGLIAAGGYV--INDVYDVEIDKINKPYRPIPSGKISVNKAK 85

Query: 200 AITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259
           A+++ L +  +A+++ L    L+  L+    L   Y+ DL     K   F   + + T  
Sbjct: 86  ALSIALFIIGIALSILLNIYALVIALVTAIGL-IYYAKDL-----KKTGFYGNLLVATTT 139

Query: 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQS 319
            L   +     F    L R ++ T    F       ++ +  ++K I D +GD     ++
Sbjct: 140 ALSIFYGGLAFFSDNWLLRIIIPTLYAFF-------LTLIREIVKGIEDYNGDSLNNVKT 192

Query: 320 ISSKLGKENVLRLC 333
           +++ LG     R+ 
Sbjct: 193 LATTLGINKSWRIA 206

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. Can not use other prenyl donors, i.e. farnesyl diphosphate (FPP) and phytyl diphosphate. Moreover, 4-hydroxybenzoate, 1,4-dihydroxy 2-naphthoate, homogentisate, and alpha-glycerophosphate do not function as prenyl acceptor substrates.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
359476155	397	PREDICTED: probable homogentisate phytyl	0.916	0.942	0.464	2e-92
219842170	411	homogentisate geranylgeranyl transferase	0.982	0.975	0.458	3e-92
296082088	398	unnamed protein product [Vitis vinifera]	0.877	0.899	0.457	3e-86
224143266	284	predicted protein [Populus trichocarpa]	0.696	1.0	0.545	2e-85
171190284	317	homogentisate geranylgeranyl transferase	0.737	0.949	0.531	6e-85
295656253	401	homogentisate geranylgeranyl transferase	0.982	1.0	0.449	2e-84
374461278	407	aromatic prenyltransferase [Epimedium ac	0.774	0.776	0.471	2e-81
301154093	394	Chlorophyll synthase [Musa balbisiana]	0.75	0.776	0.483	1e-80
254596582	407	homogentisate phytyltransferase [Malus x	0.757	0.759	0.472	3e-80
33391138	408	homogentisic acid geranylgeranyl transfe	0.786	0.786	0.463	3e-80

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 181/390 (46%), Positives = 248/390 (63%), Gaps = 16/390 (4%)

Query: 19  LQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFN 78
           LQ  GC +  QL + K H  L      N   KC  S+ F S+  I++    S +     N
Sbjct: 24  LQQQGCVQPPQLSVKKTHNFLKSCYCSN-PFKCC-SEGFSSSVNIQHLTFKSHKR----N 77

Query: 79  KYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILP 138
              V+    + G  S  ED  N  S      K+L A Y+F+RP  +IGT++GITS+++LP
Sbjct: 78  PIHVS---SEYGYPSKPEDQ-NHVS------KQLRAFYLFSRPHTIIGTVIGITSVSLLP 127

Query: 139 LQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTG 198
           L++ +DL+P +F+  LKA++ +VLMN YV  +NQ+ DVEIDKVNKP+LPLASGD SM TG
Sbjct: 128 LETISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETG 187

Query: 199 LAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTV 258
             I     L S+ + +  QSPPL   L++ FLLGTAYS+++P LRWK  P LA  C++ V
Sbjct: 188 SQIVFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIV 247

Query: 259 FGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQ 318
             +V Q +FF H QK+VLGR +V T+ ++F  A +   S V++L KDIPD DGD++FG Q
Sbjct: 248 RAIVVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQ 307

Query: 319 SISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV 378
           S + KLG++ V  LCV  L  AYG + ++GASSS   +K  ++  H  LA +LW+RAQ+V
Sbjct: 308 SFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSV 367

Query: 379 DLSNNASTYSFYMFIWKLFYAEYLLIHFLR 408
           DLS+  +  SFYMFIWKLFYAEY LI  +R
Sbjct: 368 DLSSKEAVTSFYMFIWKLFYAEYFLIPLVR 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 191/417 (45%), Positives = 267/417 (64%), Gaps = 16/417 (3%)

Query: 2   MLQMHSSSSFSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTN 61
           ML  + S   +    Y +   G   T+ +   +V+  L  S  K   I   +S S+   +
Sbjct: 1   MLHYYPSPCLNTPPKYQVLDPGQVTTVTVLKKQVNHILKESXCKKPIICSLRSLSWAKNS 60

Query: 62  K------IKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNED--DINSTSFWDVLLKKLH 113
           +      ++N    + +N  P      A+ LQ    A N+ED  DI S+S    +L+ L+
Sbjct: 61  RKKELYVLRNLRILTRKNGIP------AIFLQNNWLAPNSEDGDDICSSSKRGPILEHLN 114

Query: 114 ALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQV 173
           +LY F+RP  +IGTI+GITS+++LP+++  DL+P YF+  LKAL+ +VLMN YV  +NQ+
Sbjct: 115 SLYQFSRPHTVIGTIIGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQL 174

Query: 174 ADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGT 233
            DVEIDKVNKP LPLASG  SM TG+ I     L SL + ++ QSPPL+  L++ F LG+
Sbjct: 175 FDVEIDKVNKPYLPLASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGS 234

Query: 234 AYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAII 293
            YS++LPFLRWK   FLA  C++ V  +V Q +FF+H QK+VLG+ + I R L+FA A +
Sbjct: 235 VYSIELPFLRWKKHAFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFIPRSLMFATAFM 294

Query: 294 STISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF 353
              SA ++L KDIPD +GD+ +G QS S  LG+E VL LCV  L  AYG +V+ GASS  
Sbjct: 295 CFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSPS 354

Query: 354 QL--VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 408
            L  VKL+++IGHST+A++LW++AQ VDL++  S  SFYMFIWKLFYAEY LI F+R
Sbjct: 355 SLLPVKLITMIGHSTIAWILWMKAQFVDLTSQKSITSFYMFIWKLFYAEYFLIPFVR 411

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 171/374 (45%), Positives = 237/374 (63%), Gaps = 16/374 (4%)

Query: 22  AGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYR 81
           AGC +  QL + K H  L      N   KC  S+ F S+  I++    S +     N   
Sbjct: 3   AGCVQPPQLSVKKTHNFLKSCYCSN-PFKCC-SEGFSSSVNIQHLTFKSHKR----NPIH 56

Query: 82  VAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQS 141
           V+    + G  S  ED  N  S      K+L A Y+F+RP  +IGT++GITS+++LPL++
Sbjct: 57  VS---SEYGYPSKPEDQ-NHVS------KQLRAFYLFSRPHTIIGTVIGITSVSLLPLET 106

Query: 142 FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAI 201
            +DL+P +F+  LKA++ +VLMN YV  +NQ+ DVEIDKVNKP+LPLASGD SM TG  I
Sbjct: 107 ISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQI 166

Query: 202 TLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL 261
                L S+ + +  QSPPL   L++ FLLGTAYS+++P LRWK  P LA  C++ V  +
Sbjct: 167 VFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAI 226

Query: 262 VYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSIS 321
           V Q +FF H QK+VLGR +V T+ ++F  A +   S V++L KDIPD DGD++FG QS +
Sbjct: 227 VVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFT 286

Query: 322 SKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLS 381
            KLG++ V  LCV  L  AYG + ++GASSS   +K  ++  H  LA +LW+RAQ+VDLS
Sbjct: 287 VKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLS 346

Query: 382 NNASTYSFYMFIWK 395
           +  +  SFYMFIWK
Sbjct: 347 SKEAVTSFYMFIWK 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/284 (54%), Positives = 210/284 (73%)

Query: 112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVN 171
           LH+ Y F+RP  +IGT++GITS+++LP+++ ++L+P +FM  LKAL+ +VLMN YV  +N
Sbjct: 1   LHSFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLN 60

Query: 172 QVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLL 231
           Q+ DVEIDKVNKP LPLASGD SMGTG+AI     L S A+ +  QSP L   L++  +L
Sbjct: 61  QLFDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVL 120

Query: 232 GTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAA 291
           G+ YS++LPFLRWK + FLA  C++ V  +V Q +FF+H QK+VLG+  V+TR L+FA A
Sbjct: 121 GSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATA 180

Query: 292 IISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS 351
            +   SAV++L KDIPD DGD+ +G QS S  LG+E V  LCV  L  AYG +V+VGASS
Sbjct: 181 FMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFWLCVNMLLIAYGAAVVVGASS 240

Query: 352 SFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           +F   K ++I+GH TLAF+LWLRA++VDL++  S  SFYMFIWK
Sbjct: 241 TFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFYMFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  320 bits (821), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 160/301 (53%), Positives = 212/301 (70%)

Query: 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYV 167
           L +K+ A Y FTRP  +IG+IVGITS+++LPL SF DL+P +F+  LK ++  V +N YV
Sbjct: 17  LWRKVDAFYRFTRPHTIIGSIVGITSVSLLPLVSFEDLSPAFFVGLLKVMIPIVCVNIYV 76

Query: 168 GTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIV 227
             +NQ+ DVEIDKVNKP+LP+ASG+ SM TG AI     L S+ + +  QSPP+++ L+V
Sbjct: 77  VGLNQLYDVEIDKVNKPNLPIASGEYSMETGKAIVSAFGLMSIIMGIMFQSPPVLYCLLV 136

Query: 228 WFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLI 287
            F  GTAYS+D+P  RWK   FLA MC+V V  +  Q + F H Q+YVLGRPV+ +R L 
Sbjct: 137 CFFFGTAYSIDVPLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQQYVLGRPVLFSRSLA 196

Query: 288 FAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347
           FA   ++    V++L KDIPD DGD+ FG Q+I+  LGK+ V  LC+  L  AYG +V++
Sbjct: 197 FAIICMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKRVFWLCITILLIAYGSAVVI 256

Query: 348 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFL 407
           G+SSS  L KLV++ GH  LA +LW RA +VDL +N S  SFYMFIWKLFYAEYLLI F+
Sbjct: 257 GSSSSLLLSKLVTVTGHCILASILWSRAISVDLESNKSITSFYMFIWKLFYAEYLLIPFV 316

Query: 408 R 408
           R
Sbjct: 317 R 317

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 183/407 (44%), Positives = 251/407 (61%), Gaps = 6/407 (1%)

Query: 2   MLQMHSSSSFSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTN 61
           M+Q H+    S +   P  + G    LQ P   +      +  K     C   +   +T 
Sbjct: 1   MIQAHNHPFVSCRLQNP-PNQGLITLLQRPQRHLKFSNGNTAKKLSVHSCV--NILAATL 57

Query: 62  KIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRP 121
            I ++ +  +R  K      +  TL+ +    + +D +  T     L +K+ A Y F+RP
Sbjct: 58  SISSSRSKPTRG-KKLPGQTLCGTLEHEFVIESKDDQL--TLLQGDLWRKIDAFYRFSRP 114

Query: 122 FAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV 181
             +IGTI+GITS+++LPL S  DL+P +F+ +LKAL+ ++ MN YV  +NQ+ DVEIDKV
Sbjct: 115 HTIIGTIIGITSVSLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYVVGLNQLFDVEIDKV 174

Query: 182 NKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPF 241
           NKP+LPLASG+ SMG G AI     L S A+ +  QSPP+ F L++ FL G+AYSV+LP 
Sbjct: 175 NKPNLPLASGEYSMGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICFLFGSAYSVELPL 234

Query: 242 LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMS 301
           LRWK   FLA   ++ V  +    +FF H QKYVLGRP+V  R L FA   IS  + V++
Sbjct: 235 LRWKRNAFLAAFSILMVRAITVNLAFFYHIQKYVLGRPMVFPRSLCFATVCISMFTTVIA 294

Query: 302 LLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSI 361
           L KDIPD DGD+ FG QS S  LG++ V  LC+  L  AY  ++++GASSSF L KLV++
Sbjct: 295 LFKDIPDVDGDRDFGIQSFSVCLGQKRVFWLCIGILLIAYASALVIGASSSFLLSKLVTV 354

Query: 362 IGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 408
           IGH TLA +LW RA +V+L +N+S  SFYM IWKLFYAEYLLI F+R
Sbjct: 355 IGHCTLASILWRRANSVNLEDNSSMTSFYMSIWKLFYAEYLLIPFVR 401

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461278|gb|AEZ53107.1| aromatic prenyltransferase [Epimedium acuminatum]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/316 (47%), Positives = 218/316 (68%)

Query: 93  SNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFME 152
           ++  +  N  +FW  +     A Y F+RP  +IGT + I S+++L ++  +DL+P +F  
Sbjct: 92  ASEPESYNPNNFWRSMQSATDAFYRFSRPHTVIGTALSILSVSLLAIERLSDLSPLFFTG 151

Query: 153 FLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAI 212
            L+A+++A+ MN Y+  +NQ+ DVEIDKVNKP LPLASG+ S+GTG+ I    ++ S  +
Sbjct: 152 LLEAIVAALFMNIYIVGLNQLFDVEIDKVNKPYLPLASGEYSIGTGILIVAAFAVMSFWL 211

Query: 213 ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ 272
              + S PL++ L + F+LGTAYS++LP LRWK    +A MC++ V  ++ Q +FF+H Q
Sbjct: 212 GWFVGSGPLLWALSISFILGTAYSINLPLLRWKRFALVAAMCILAVRAVIVQLAFFLHIQ 271

Query: 273 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRL 332
            +V  RP ++TRPLIFA A +S  S V++L KDIPD +GD  FG +S + +LG++ V  +
Sbjct: 272 TFVYRRPAILTRPLIFATAFMSFFSVVIALFKDIPDIEGDAIFGIRSFTVRLGQKRVFWI 331

Query: 333 CVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 392
           CVY L  AYGV+V+VGA+S   L KLV+++GH  LA +LWL A++VDL+N  +  SFYMF
Sbjct: 332 CVYLLEMAYGVAVLVGAASPSPLSKLVTVLGHVVLASILWLNAKSVDLTNKTAITSFYMF 391

Query: 393 IWKLFYAEYLLIHFLR 408
           IWKLFYAEYLLI  +R
Sbjct: 392 IWKLFYAEYLLIPLVR 407

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154093|emb|CBW30171.1| Chlorophyll synthase [Musa balbisiana]

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 148/306 (48%), Positives = 216/306 (70%)

Query: 103 SFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVL 162
           S W   L  L+A Y F+RP  +IGTI+ I S+++L ++S  D++P +    L+A+++A+ 
Sbjct: 89  SMWKSALTSLNAFYRFSRPHTVIGTIMSIISVSLLAVESLTDISPSFLTGLLEAVIAALF 148

Query: 163 MNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLI 222
           MN Y+  +NQV D+EIDKVNKP+LPLASG+ S+ TG+A+ LT +  S  +A  + S PL 
Sbjct: 149 MNIYIVGLNQVYDIEIDKVNKPNLPLASGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLF 208

Query: 223 FGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVI 282
           + L + F+LGTAYSV+LPFLRWK    +A +C++ V  +V Q +FF+H Q +V  R V  
Sbjct: 209 WALFISFILGTAYSVNLPFLRWKRFAVVAAVCILAVRAVVVQLAFFLHMQTFVFRRSVSF 268

Query: 283 TRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342
           +RPLIFA A +S  S V++L KDIPD +GD+ +G +S S +LG++ V  +CVY L  AY 
Sbjct: 269 SRPLIFATAFMSFFSVVIALFKDIPDIEGDRIYGIRSFSVRLGQKRVFWICVYLLEMAYS 328

Query: 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYL 402
           V++++GA+SS    K V+++GH+ LA +LW RA+++DL + A+  SFYMFIWKLFYAEYL
Sbjct: 329 VAMVIGATSSCLWSKFVTVLGHAVLASILWKRARSLDLMSKAAITSFYMFIWKLFYAEYL 388

Query: 403 LIHFLR 408
           LI  +R
Sbjct: 389 LIPLVR 394

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|254596582|gb|ACT75571.1| homogentisate phytyltransferase [Malus x domestica]

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 146/309 (47%), Positives = 216/309 (69%)

Query: 100 NSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLS 159
           N  S W+ +   + A Y F+RP  +IGT + I S+++L +++ +DL+P +F   L+A+++
Sbjct: 99  NPKSIWNSIKNAIDAFYRFSRPHTVIGTALSIISVSLLAVKNLSDLSPLFFTGVLEAVVA 158

Query: 160 AVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSP 219
           A  MN Y+  +NQ++D++IDKVNKP LPLASG+ S+GTG+ I  +  + S  +   + S 
Sbjct: 159 AFFMNIYIVGLNQLSDIDIDKVNKPYLPLASGEYSVGTGIMIVTSFLIMSFWLGWVVGSW 218

Query: 220 PLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRP 279
           PL + L V F+LGTAYS++LP LRWK    +A MC++ V  ++ Q +FF+H Q +V  RP
Sbjct: 219 PLFWALFVSFVLGTAYSINLPLLRWKRSAVVAAMCILAVRAVIVQLAFFLHMQMHVYKRP 278

Query: 280 VVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339
              +RPLIFA A +S  S V++L KDIPD DGDK FG +S + ++G++ V  +C+  L  
Sbjct: 279 AAFSRPLIFATAFMSFFSVVIALFKDIPDIDGDKIFGIRSFTVRMGQKRVFWICISLLEM 338

Query: 340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYA 399
           AYGV+V++GASS F L K V+++GH+ LA +LW RA++VDL++ A+  SFYMFIWKLFYA
Sbjct: 339 AYGVAVLLGASSGFMLSKCVTVLGHTILALVLWNRAKSVDLNSKAAITSFYMFIWKLFYA 398

Query: 400 EYLLIHFLR 408
           EYLLI  +R
Sbjct: 399 EYLLIPLVR 407

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391138|gb|AAP43911.1| homogentisic acid geranylgeranyl transferase [Hordeum vulgare] gi|326497589|dbj|BAK05884.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 151/326 (46%), Positives = 214/326 (65%), Gaps = 5/326 (1%)

Query: 88  QQGCASNNEDD--INSTSFWDV---LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSF 142
           Q GC+  N D    N+    ++   +LKKL + Y F RP  + GTI+GITS+++LP++S 
Sbjct: 83  QAGCSEVNWDQNGSNANRLEEIRGDVLKKLRSFYEFCRPHTIFGTIIGITSVSLLPMKSI 142

Query: 143 ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAIT 202
            D T      +L+AL +A+ MN YV  +NQ+ D++IDK+NKP LPLASG+ S+ TG+ + 
Sbjct: 143 DDFTVTVLRGYLEALTAALCMNIYVVGLNQLYDIQIDKINKPGLPLASGEFSVATGVFLV 202

Query: 203 LTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262
           L   + S +I +   S PL+  LIV FLLG+AYS++ PFLRWK    LA  C++ V  ++
Sbjct: 203 LAFLIMSFSIGIRSGSAPLMCALIVSFLLGSAYSIEAPFLRWKRHALLAASCILFVRAIL 262

Query: 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISS 322
            Q +FF H Q++VL RP+  T+ L+FA   +   SAV++L KDIPD DGD+ FG QS+S 
Sbjct: 263 VQLAFFAHMQQHVLKRPLAATKSLVFATLFMCCFSAVIALFKDIPDVDGDRDFGIQSLSV 322

Query: 323 KLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN 382
           +LG + V +LC+  L  AYG + +VGASS+    K++++ GH  LA  LW RAQ  ++ N
Sbjct: 323 RLGPQRVYQLCISILLTAYGAATLVGASSTNLFQKIITVSGHGLLALTLWQRAQHFEVEN 382

Query: 383 NASTYSFYMFIWKLFYAEYLLIHFLR 408
            A   SFYMFIWKLFYAEY LI F++
Sbjct: 383 QARVTSFYMFIWKLFYAEYFLIPFVQ 408

Source: Hordeum vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.843	0.875	0.419	4.9e-69
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.845	0.841	0.357	1.1e-57
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.830	0.832	0.350	1.1e-55
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.730	0.758	0.310	1.6e-29

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 148/353 (41%), Positives = 212/353 (60%)

Query:    58 YSTNKIKNNENTSSRNCKPFNK--YRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHAL 115
             +  N ++ +   SS    P +K  +RV  T  Q     +N       SF D     L A 
Sbjct:    48 FRNNLVRPDGQGSSLLLYPKHKSRFRVNATAGQPEAFDSNS---KQKSFRD----SLDAF 100

Query:   116 YVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVAD 175
             Y F+RP  +IGT++ I S++ L ++  +D++P  F   L+A+++A++MN Y+  +NQ++D
Sbjct:   101 YRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSD 160

Query:   176 VEIDKVNKPDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFGLIVWFLLGTAY 235
             VEIDKVNKP LPLASG+ S+ TG                   S PL + L V F+LGTAY
Sbjct:   161 VEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAY 220

Query:   236 SVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLXXXXXXXXX 295
             S++LP LRWK    +A MC++ V  ++ Q +F++H Q +V GRP++ TRPL         
Sbjct:   221 SINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSF 280

Query:   296 XXXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 355
                V++L KDIPD +GDK FG +S S  LG++ V   CV  L  AY V+++VGA+S F  
Sbjct:   281 FSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIW 340

Query:   356 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 408
              K++S++GH  LA  LW RA++VDLS+     S YMFIWKLFYAEYLL+ FL+
Sbjct:   341 SKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 126/352 (35%), Positives = 194/352 (55%)

Query:    58 YSTNKIKNNENTSSRNCKPFNKYRV-AVTLQQQGCASNNEDDINSTSFWDVLLKKLHALY 116
             Y  N+  +  NTS + C+   KY V A++ Q         D     S WD +   L   Y
Sbjct:    65 YKVNEGGSTSNTS-KECE--KKYVVNAISEQSFEYEPQTRDP---ESIWDSVNDALDIFY 118

Query:   117 VFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV 176
              F RP+AM   ++G T  +++ ++  +DL+  +F+ +L+ +++ + ++ +   +NQ+ D+
Sbjct:   119 KFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDI 178

Query:   177 EIDKVNKPDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFGLIVWFLLGTAYS 236
             EIDK+NKPDLPLASG LS                       S PL + + +  ++ +AY+
Sbjct:   179 EIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYN 238

Query:   237 VDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLXXXXXXXXXX 296
             VDLP LRWK  P L  +  +    +     FF+H Q  V  RP    RPL          
Sbjct:   239 VDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIY 298

Query:   297 XXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLV 356
               V++L KDIPD +GD++FG QS+S +LG + V  +CV  L   YGV+++VGA+S     
Sbjct:   299 AIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWS 358

Query:   357 KLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 408
             K+++++GH+ LA +LW  A++VDL++N   +SFYMFIWKL  AEY LI   R
Sbjct:   359 KIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYFLIPLFR 410

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 121/345 (35%), Positives = 188/345 (54%)

Query:    65 NNENTSSRNCKPFNKYRV-AVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFA 123
             N   ++S+ C+   KY V A++ Q         D  N    W  +   L   Y F RP+A
Sbjct:    68 NEGGSTSKECE--KKYVVNAISEQSFEYEPQARDPKN---IWGSVNDALDTFYKFCRPYA 122

Query:   124 MIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK 183
             +   ++G T  +++ ++  +DL+  +F+ +L+ +++ + ++ +   +NQ+ D+EIDK+NK
Sbjct:   123 IFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFDVGLNQLCDIEIDKINK 182

Query:   184 PDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFGLIVWFLLGTAYSVDLPFLR 243
             PDLPLASG+LS                       S PL + + +  +   AY+VDLP LR
Sbjct:   183 PDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFICCMFAAAYNVDLPLLR 242

Query:   244 WKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLXXXXXXXXXXXXVMSLL 303
             WK  P L  +  +    +     FF+H Q  V  RP    RPL            V++L 
Sbjct:   243 WKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALF 302

Query:   304 KDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIG 363
             KDIPD +GD++FG QS+S +LG + V  +CV  L  AYGV+++VGA+S     K+++++G
Sbjct:   303 KDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILVGATSPILWSKIITVLG 362

Query:   364 HSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 408
             H+ LA +LW  A++ DL++N    SFYMFIWKL  AEY LI   R
Sbjct:   363 HAILASVLWYHAKSTDLTSNVVLQSFYMFIWKLHTAEYCLIPLFR 407

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 95/306 (31%), Positives = 145/306 (47%)

Query:   106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTP-KYFMEFLKALLSAVLMN 164
             D + +  +A + F RP  + GT +G T++    L     L      ++ L  LL+ +  N
Sbjct:    92 DRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLKALSGLLALICGN 151

Query:   165 NYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFG 224
              Y+  +NQ+ D+ IDKVNKP LP+A+GDLS+ +                     P +   
Sbjct:   152 GYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPFITSL 211

Query:   225 LIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR 284
               +   LGT YSV  P LR K  P  A + + TV G +  F  + H  +  LG P   + 
Sbjct:   212 YSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSA 268

Query:   285 PLXXXXXXXXXXXXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS 344
             P+            V+++ KD+PD +GD++F   ++++KLG  N+  L    L   Y VS
Sbjct:   269 PVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNY-VS 327

Query:   345 VIVGASSSFQLVK-LVSIIGHSTLAFLLWLRAQTVDLSN--NASTYSFYMFIWKLFYAEY 401
              I  A    Q+ +  + I  H  LA  L  +   ++ +N    +   +Y FIW LFYAEY
Sbjct:   328 AISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNLFYAEY 387

Query:   402 LLIHFL 407
             LL  FL
Sbjct:   388 LLFPFL 393


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      408       372   0.00087  117 3  11 22  0.46    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  240 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.84u 0.12s 30.96t   Elapsed:  00:00:02
  Total cpu time:  30.84u 0.12s 30.96t   Elapsed:  00:00:02
  Start:  Mon May 20 15:10:06 2013   End:  Mon May 20 15:10:08 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VWJ1	HPT1_ARATH	2, ., 5, ., 1, ., n, 8	0.4343	0.8823	0.9160	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032719001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (373 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00032449001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (502 aa)	•		•			•	•		0.961
	GSVIVG00023813001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (340 aa)						•	•		0.905
	GSVIVG00020095001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (340 aa)						•	•		0.905
	GSVIVG00015688001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (196 aa)						•	•		0.902
	GSVIVG00016328001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (467 aa)			•			•	•		0.850
	GSVIVG00027948001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (420 aa)						•	•		0.810
	GSVIVG00017359001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (466 aa)						•	•		0.804
	GSVIVG00019306001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (234 aa)			•						0.430
	GSVIVG00029773001	SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (142 aa)			•						0.429
	GSVIVG00013955001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (345 aa)	•					•	•		0.420

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-120
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	4e-68
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	2e-23
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-18
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	1e-11
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	2e-09
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	2e-09
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	1e-07
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	3e-07
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	7e-07
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	2e-06
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	3e-05
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	7e-05
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	8e-05
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	2e-04
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	4e-04

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  350 bits (901), Expect = e-120
 Identities = 143/280 (51%), Positives = 199/280 (71%)

Query: 129 VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPL 188
           +GITS+++L ++S +D +P +F   L+AL+ A+LMN Y+  +NQ+ D+EIDKVNKP LPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKP 248
           ASG+ S+ TG+AI  + ++ S  +   + S PL + L V F+LGTAYS++LP LRWK   
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 249 FLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPD 308
             A  C++ V  +V Q +FF+H Q +VLGRP V TRPLIFA A +   S V++L KDIPD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 309 EDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLA 368
            +GD+ FG +S S +LG++ V  LCV  L  AY  +++VGASSSF   K+++++GH  LA
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA 240

Query: 369 FLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 408
            +LW RAQ+VDLS+ A+  SFYMFIWKLFYAEY LI  +R
Sbjct: 241 SILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  217 bits (555), Expect = 4e-68
 Identities = 106/307 (34%), Positives = 166/307 (54%), Gaps = 9/307 (2%)

Query: 100 NSTSFWDVLLKKLHALYVFTRPFAMIGT---IVGITSIAILPLQSFADLTPKYFMEFLKA 156
              +    +   L+AL+ F+RP  +IGT   ++G+  IAI    +   L        L A
Sbjct: 1   LPKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALA--NLGLLLGA 58

Query: 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 216
            ++ +  N Y+  +NQ+ D+EID++NKP LPLA+G+ S   G  I +   + +L +A  L
Sbjct: 59  WIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAA-L 117

Query: 217 QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVL 276
             P L+  + +  L+GTAYS  LP +R K  P LA +C+ TV G++     F+HFQ ++L
Sbjct: 118 LGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ-WLL 174

Query: 277 GRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 336
           G  V+I   +      +   +  +++ KDIPD +GD+Q+   + + +LGK+ V +L  + 
Sbjct: 175 GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWV 234

Query: 337 LFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKL 396
           L   Y   + VG  S   +     I+ H  L  LLW R+Q VDL +  +   FY FIWKL
Sbjct: 235 LTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKL 294

Query: 397 FYAEYLL 403
           F+ EYLL
Sbjct: 295 FFLEYLL 301

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 98.4 bits (245), Expect = 2e-23
 Identities = 72/249 (28%), Positives = 112/249 (44%), Gaps = 18/249 (7%)

Query: 153 FLKALLSAVLMNNYVGTVNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLTLSLTSL 210
            L  LL+ +L+      +N   D EID    NKPD PL SG +S    L + L L L  L
Sbjct: 25  LLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGL 84

Query: 211 AIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270
            +AL L    L+ GL+    LG  YS   P LR K +P L  + +   FGL+        
Sbjct: 85  LLALLLGPLLLLLGLLGLL-LGLLYS---PPLRLKRRPLLGELVVGLAFGLLILLGA--- 137

Query: 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL 330
              Y +G    I  PL+  A  +  +S  + L  DI D +GD++ G +++  +LG++  L
Sbjct: 138 ---YAVGG--DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRAL 192

Query: 331 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY 390
            L    L  A  + +++    +     L+ ++    LA  L + A+ +   N       +
Sbjct: 193 ALYALLLAAALLLLLLLLLLLAP----LLLLLAVLLLALALLVAARLLRRRNPEEPARTF 248

Query: 391 MFIWKLFYA 399
           +FI  LF  
Sbjct: 249 LFIALLFGL 257

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 69/300 (23%), Positives = 119/300 (39%), Gaps = 25/300 (8%)

Query: 107 VLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNY 166
             LK L  L    RP   +  ++      +L       L        L A L+  L  + 
Sbjct: 8   NKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKL-----LLLAFLAFFLARSA 62

Query: 167 VGTVNQVADVEIDKVNKP--DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFG 224
              +N +AD EID++N    + PL SG +S+   L + + L L  LA+AL L     +  
Sbjct: 63  GYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS 122

Query: 225 LIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR 284
           L    +L  AY         K   FL  + +   FGL                  + +  
Sbjct: 123 LA-ALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGS------LPLLA 169

Query: 285 PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS 344
            L+  AAI+ T+     ++  I D +GD++ G +S+    G +  L L    L  A  + 
Sbjct: 170 WLLLLAAILWTLG--YDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALA-LLLLLASALL 226

Query: 345 VIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLI 404
           V++G      L+ L+ ++G    A LL  +   VD+ +  + ++ +     L    ++ +
Sbjct: 227 VLLGL--LAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFIGL 284

Length = 289

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 34/193 (17%)

Query: 154 LKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIA 213
           L  L++  L   +  ++N   D ++D +N+P  P+ SG +S+       L L++  L +A
Sbjct: 41  LGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVA 100

Query: 214 LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTK----PFLAGMCMVT--------VFGL 261
           L L +  ++   +V  +L   YS+  P ++ K      P   G+            +F  
Sbjct: 101 LVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFA- 157

Query: 262 VYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSIS 321
               ++            VV+       A  I T       L D    +GD+Q G +S+ 
Sbjct: 158 --PLTWQS----------VVVALIYSLGAHGIMT-------LNDFKSVEGDRQLGLRSLP 198

Query: 322 SKLGKENVLRLCV 334
             +G +    + V
Sbjct: 199 VMIGVKRAAIVAV 211

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 23/185 (12%)

Query: 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 216
           LL+  L+     T+N   D E+D +N+P  P+ SG +S+   L +   L++  LA+A  L
Sbjct: 71  LLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL 130

Query: 217 QSPPLIFGL-IVWFLLGTAYSVDLPFLRWKTK----PFLAGMCMVTVFGLVYQFSFFIHF 271
              P +F   ++   L   YS   P LR K       +  G+    +       +F    
Sbjct: 131 G--PWVFLAALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAF---- 182

Query: 272 QKYVLGRPVVITRPLIFAAAIISTISA--VMSLLKDIPDEDGDKQFGFQSISSKLGKENV 329
                    + + P I   A++ ++ A  +M+ L D    +GD+Q G +S+    G++N 
Sbjct: 183 ------GAGLPSWP-IVILALLYSLGAHGIMT-LNDFKSVEGDRQLGLRSLPVVFGEKNA 234

Query: 330 LRLCV 334
            R+  
Sbjct: 235 ARIAC 239

Length = 314

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 58/233 (24%), Positives = 99/233 (42%), Gaps = 22/233 (9%)

Query: 169 TVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLI-- 226
            +N   D EID++N+PD P+ SG +S    LA ++ L    +A+A  L    L   L   
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNS 115

Query: 227 VWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPL 286
           +  +L        P L   +  +L G             S F+ F    +G   ++   +
Sbjct: 116 LLLVLYAETLKGTPGLGNASVAYLTG-------------STFL-FGGAAVGTEGLLALLV 161

Query: 287 IFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 346
           +FA A ++T++    ++KD+ D +GD+  G +++   +G    L +    L  A   S +
Sbjct: 162 LFALAALATLA--REIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL 219

Query: 347 VGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYA 399
               S+F L  LV +      A L+ L A    L     T S  +  + +F A
Sbjct: 220 PYLLSTFGLWYLVLVA----PADLVMLAAAYRSLKKTDPTASQKLLKYGMFLA 268

Length = 276

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 20/200 (10%)

Query: 148 KYFMEFLKALL---SAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLT 204
              +   +ALL   +A   +     +N   D E+D++N+PD P+ SG +S    L + + 
Sbjct: 31  LGGLPLDEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAIL 90

Query: 205 LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ 264
           L +  L  A  +     +  ++V  +LG  Y+  L     K    +  + +  + G+   
Sbjct: 91  LFILGLIAAYLISPLAFLVVILVS-VLGILYNWKL-----KEYGLIGNLYVAFLTGMT-- 142

Query: 265 FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL 324
              FI F    +G        L+ A A + T+     ++KDI D +GD+  G ++++   
Sbjct: 143 ---FI-FGGIAVGELNEAVI-LLAAMAFLMTLGR--EIMKDIEDVEGDRLRGARTLAILY 195

Query: 325 GKENVLRLCVYALFFAYGVS 344
           G++   R+   A  F   V 
Sbjct: 196 GEKIAGRIA--AALFILAVL 213

Length = 279

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 20/228 (8%)

Query: 170 VNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWF 229
           +N + D+EIDK+NKP+ P+ SG +S+      ++TL +  L +++ +     +  L+   
Sbjct: 56  INDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSI 115

Query: 230 LLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFA 289
           LL   Y+ DL     K    +  + +  + GL + F     F        ++I     F 
Sbjct: 116 LL-YLYAKDL-----KKTGLIGNLIVAYLTGLSFIFGGLAVFNVL----RIIILFLCAFF 165

Query: 290 AAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA 349
           +     I      +KDI D +GD +    ++  K G +    +    L  A  +S +   
Sbjct: 166 STWSREI------VKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYF 219

Query: 350 SSSFQLVKLVSIIGHS---TLAFLLWLRAQTVDLSNNASTYS-FYMFI 393
              F +  L+ +I       +A L+ L+  +++ ++ AS Y    M +
Sbjct: 220 LGIFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKASKYLKIIMIL 267

Length = 279

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 49/257 (19%)

Query: 111 KLHALYVFTRPF-AMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGT 169
           +L A    TRP   ++  IVGI   +++ L     +     + FL   L     N    T
Sbjct: 2   ELKAFIEITRPHNCILAGIVGILG-SLVALGGIPPIK-TLILIFLVVYLGCSGGN----T 55

Query: 170 VNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWF 229
           +N   D EIDK+N+P+ PL  G +S    L  +L L    LA+A  +     +F L  + 
Sbjct: 56  INDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYV 115

Query: 230 LLGTAYSVDLPFL-RWKTKPF-------LAGMCMVT-VFGLVYQFSFFIHFQKYVLGRPV 280
           L+         FL  WK KP        +A +   T ++G +             +GR +
Sbjct: 116 LM---------FLYAWKLKPLPFIGNVVVALLTGATPIYGAI------------AVGR-I 153

Query: 281 VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340
            +   L   A +++    +M   KDI D +GDK  G +++   +GK+   R       F 
Sbjct: 154 GLAGYLAICAFLVNVAREIM---KDIEDIEGDKAKGAKTLPIIIGKK---RAAYIGAIFG 207

Query: 341 YGVSVIVGASSSFQLVK 357
             ++VI    +SF  VK
Sbjct: 208 V-LTVI----ASFLPVK 219

Length = 277

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 53/252 (21%), Positives = 99/252 (39%), Gaps = 22/252 (8%)

Query: 122 FAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV 181
            A +G  +   +  +L L     L           LL   L+   V  +N + D+E D +
Sbjct: 18  IAALGQSLVYMASLLLGLPISWLL-----------LLITFLIAAAVYIINYLTDLEEDII 66

Query: 182 NKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPF 241
           NKP+  + S   + G  L + +        +   +  P      I+  +LG  YSV    
Sbjct: 67  NKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFF-K 125

Query: 242 LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMS 301
            R K  P    + +  ++ L        ++Q         I   L+  A  I   S +  
Sbjct: 126 RRLKRIPLFKNLVVSLLWALSPLILGVYYYQLT-------IFSLLLLYAVFIFLKSFIRE 178

Query: 302 LLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSI 361
           ++ DI D +GD++ G +++   LGKE  L+  +        + ++   +    L+ LV +
Sbjct: 179 IVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLLVLL 238

Query: 362 IGHSTLAFLLWL 373
           +    LA++L+ 
Sbjct: 239 LL---LAYVLYY 247

Length = 285

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 170 VNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIV 227
           VN + DVE D++   K + P+ASG +S+     + + L + SLA+A  L SP L   L+V
Sbjct: 65  VNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAY-LLSPKLALVLLV 123

Query: 228 WFLLGTAYS 236
           + +L  AYS
Sbjct: 124 YLVLNLAYS 132

Length = 295

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 58/241 (24%), Positives = 90/241 (37%), Gaps = 57/241 (23%)

Query: 115 LYVFTRP---FAMIGT-IVGITSIAILPLQSFADL-TPKYFMEFLKALLSAVLMNNYVGT 169
           L V +RP     + G  +VG+   A     S ADL +P     F   L  A   N ++  
Sbjct: 11  LLVLSRPRFWLYLAGPVVVGVAYAA----DSVADLFSPAAVALFAYFLFPA---NVFLYG 63

Query: 170 VNQVADVEIDKVN--KPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPL-IFGLI 226
           VN V D + D++N  K               + + + LS  +LA+A  L  PP     L+
Sbjct: 64  VNDVFDADTDELNPKKDREREVR--YRGDRRVLVAVALS-GALALAFLLVLPPAAWPALL 120

Query: 227 VWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPL 286
            + +L   YS   P LR+KT P L                  +    Y+L        P 
Sbjct: 121 AFLVLSVEYSA--PPLRFKTTPVLD----------------SLSNGLYIL--------PG 154

Query: 287 IFAAAIISTI-------------SAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLC 333
           + A A++S               +  M     IPD + D+  G ++ ++ LG+      C
Sbjct: 155 VAAYALVSGSLPPLLAVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYC 214

Query: 334 V 334
            
Sbjct: 215 A 215

Length = 282

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 14/186 (7%)

Query: 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 216
           LLS   +  Y  T+N   D +ID +N+P  P+ SG +S    +   + L +  +AIA  L
Sbjct: 60  LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFIL 119

Query: 217 -----QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHF 271
                   P +F L ++     A+    P L+ K   +L    +   +  +  ++    F
Sbjct: 120 DLWAGHEFPNVFVLALFGSF-IAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGHALF 178

Query: 272 QKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR 331
            +     P +    LI++ A +      ++++ D    +GD+  G QS+    G E    
Sbjct: 179 GEL---NPDIAVLTLIYSIAGLG-----IAIVNDFKSVEGDRALGLQSLPVAFGIETAAW 230

Query: 332 LCVYAL 337
           +CV A+
Sbjct: 231 ICVGAI 236

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 9/80 (11%)

Query: 159 SAVLMNNYVGTVNQVADVEIDK--VNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 216
           SAV    Y+  +N + D+E D+    K   P ASG L +  GLA    L L  LA+AL+L
Sbjct: 240 SAV----YI--LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALAL 293

Query: 217 QSPPLIFGLIVWFLLGTAYS 236
             P  +  L+ +  L  AYS
Sbjct: 294 -GPAFLLVLLAYLALTLAYS 312

Length = 479

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 60/209 (28%)

Query: 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM-------------GTGLAITL 203
           L+S   +  Y  T+N   D EID +N+P  P+ SG +S              G GLA TL
Sbjct: 129 LMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTL 188

Query: 204 -------TLSLTSLAIALSLQS-----PPLIF---GLIVWFLLGTAYSVDLPFLRWKTKP 248
                     +  LA+  SL S     PPL     G I  + LG +Y + LP+  W    
Sbjct: 189 DVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASY-ISLPW--W---- 241

Query: 249 FLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPD 308
             AG     +FG                     +T  ++    + S     ++++ D   
Sbjct: 242 --AGQ---ALFG--------------------TLTPDVVVLTLLYSIAGLGIAIVNDFKS 276

Query: 309 EDGDKQFGFQSISSKLGKENVLRLCVYAL 337
            +GD+  G QS+    G E    +CV ++
Sbjct: 277 IEGDRALGLQSLPVAFGVETAKWICVGSI 305

Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.98
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.98
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.97
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.97
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PLN02922	315	prenyltransferase	99.97
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
PRK12871	297	ubiA prenyltransferase; Reviewed	99.96
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.96
PRK13105	282	ubiA prenyltransferase; Reviewed	99.96
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.95
PRK12872	285	ubiA prenyltransferase; Reviewed	99.95
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.95
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.94
PRK12875	282	ubiA prenyltransferase; Reviewed	99.94
PLN02776	341	prenyltransferase	99.93
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.93
PRK13591	307	ubiA prenyltransferase; Provisional	99.93
PRK13592	299	ubiA prenyltransferase; Provisional	99.93
PRK08238	479	hypothetical protein; Validated	99.85
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.85
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.52
KOG4581	359	consensus Predicted membrane protein [Function unk	99.42
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	92.09
PRK12872	285	ubiA prenyltransferase; Reviewed	89.6
PRK13591	307	ubiA prenyltransferase; Provisional	88.21
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	87.88
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	87.05
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	85.66
PRK13105	282	ubiA prenyltransferase; Reviewed	84.96
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	84.91
PRK13592	299	ubiA prenyltransferase; Provisional	84.45
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	83.95
PLN02922	315	prenyltransferase	83.73
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	83.18
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	82.61
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	82.17
PRK12875	282	ubiA prenyltransferase; Reviewed	81.92
PLN00012	375	chlorophyll synthetase; Provisional	80.21
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	80.19
PRK12884	279	ubiA prenyltransferase; Reviewed	80.04

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=1.2e-56  Score=429.22  Aligned_cols=277  Identities=51%  Similarity=0.898  Sum_probs=256.0

Q ss_pred             HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCcccccccCHHHHHHHHHHHHHHHHH
Q 015392          132 TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLA  211 (408)
Q Consensus       132 l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~iS~~~a~~~~~~~~~l~l~  211 (408)
                      +..+++|.+..+++++.++.+++.++++.+|++.+..++|||+|+|+||+|||+||+|||++|+++++.+++.+.++|++
T Consensus         4 ~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~   83 (280)
T PLN02878          4 TSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFG   83 (280)
T ss_pred             hHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            34456676666777777788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHH
Q 015392          212 IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAA  291 (408)
Q Consensus       212 l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~  291 (408)
                      +++.+|+++++++++.+++++++||.++||+|+||+++++..|+..++++..++|+|.+++++++|++..+++++++.++
T Consensus        84 la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~  163 (280)
T PLN02878         84 MGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATA  163 (280)
T ss_pred             HHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHH
Confidence            99999998888887778899999998889999999999999999888888889999999999999987666667777777


Q ss_pred             HHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 015392          292 IISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLL  371 (408)
Q Consensus       292 ~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l  371 (408)
                      ++.++..+++++||++|+|||++.|+||+|+++|++++.+++..++.++|+..++.++.++..+...++..+|++++..+
T Consensus       164 f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L  243 (280)
T PLN02878        164 FMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASIL  243 (280)
T ss_pred             HHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999988888888877788889999999999999


Q ss_pred             HHHHHHccCCChHhhHHHHHHHHHHHHHHHHHhhhcC
Q 015392          372 WLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR  408 (408)
Q Consensus       372 ~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~~p~~~  408 (408)
                      |+|.+++|+++++++++|||||||+||+||+++|+.|
T Consensus       244 ~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~  280 (280)
T PLN02878        244 WQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR  280 (280)
T ss_pred             HHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999987

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=1.6e-53  Score=419.71  Aligned_cols=304  Identities=33%  Similarity=0.566  Sum_probs=257.3

Q ss_pred             chhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 015392          101 STSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEID  179 (408)
Q Consensus       101 ~~~~~~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D  179 (408)
                      |++.|++..+.+++|+|++|||+.+++.++++.+.++|.....+ .....+...+.++++..+++.+.+++|||+|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            67788899999999999999999999999999888876432221 12112333445555556666666669999999999


Q ss_pred             cCCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHH
Q 015392          180 KVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF  259 (408)
Q Consensus       180 ~inkp~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~  259 (408)
                      ++|||+||+++|++|+++++.+.+++.++|+.+++.+|++.+.++ +++.+++++||  .||+|+||+|+.++++++..+
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~  158 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GISLLIGTAYS--LPPIRLKRFPLLAALCIFTVR  158 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHc--CCchhhcccchhHHHHHHHHH
Confidence            999999999999999999999999999999999999998776655 46899999999  599999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHH
Q 015392          260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  339 (408)
Q Consensus       260 g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~  339 (408)
                      |.++.+|.+.+.+... +.....+..+++..+++.+++.+++++||++|+|||++.|+||+|+++|++++.+++..++.+
T Consensus       159 g~i~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~  237 (308)
T PRK12887        159 GVIVNLGLFLHFQWLL-GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTA  237 (308)
T ss_pred             HHHHHHHHHHHHHHHH-hccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHH
Confidence            8888888876544322 323334455666777888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHHHHHHHHHHHHHhhhcC
Q 015392          340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR  408 (408)
Q Consensus       340 ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~~p~~~  408 (408)
                      +|+..++.++....++....+.++|++++..+++|.+++|+++++++.+|||||||+||+||+++|+.|
T Consensus       238 ~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~  306 (308)
T PRK12887        238 CYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC  306 (308)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888877766666666667799999999999999999999999999999999999999999999976

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.8e-35  Score=287.78  Aligned_cols=273  Identities=16%  Similarity=0.171  Sum_probs=207.4

Q ss_pred             cCchhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 015392           99 INSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEI  178 (408)
Q Consensus        99 ~~~~~~~~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~  178 (408)
                      .|| +.++..++++++|++++||++.++...+.+.|.++|.+..+  ++.   .+++.+++.+++++++|++||++|+|+
T Consensus         3 ~~~-~~~~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~---~l~l~~lg~~l~~~a~~~~Nd~~D~di   76 (300)
T PRK13106          3 WDP-GGLNNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIS---TLILIFLALFFLRTAGMTNDNLADLEI   76 (300)
T ss_pred             CCc-ccchhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhhHHhcc
Confidence            344 23444778999999999999999999989999999865432  332   245677899999999999999999999


Q ss_pred             ccCCC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHH
Q 015392          179 DKVNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMV  256 (408)
Q Consensus       179 D~ink--p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~  256 (408)
                      |++|+  ++||+|+|++|++|++.+.++..+.++.++.++|+.+..++. +++++...|+.      +||++.++|+.++
T Consensus        77 D~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg  149 (300)
T PRK13106         77 DAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLA  149 (300)
T ss_pred             ccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHH
Confidence            99995  599999999999999999888788888888888988777665 45556778985      7999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcc-----cchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHH
Q 015392          257 TVFGLVYQFSFFIHFQKYVLGRPV-----VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR  331 (408)
Q Consensus       257 ~~~g~~~~~G~~~~~~~~v~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~  331 (408)
                      ...+..+..|+.++     .|...     ..+...+++.+...+|+.+++++|+++|+|+|++.|+||+|+++| +++.+
T Consensus       150 ~~~~~~~~~G~~a~-----~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~  223 (300)
T PRK13106        150 SIQGLAVFSGAVAV-----LGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALT  223 (300)
T ss_pred             HHHHHHHHHHHHHH-----cCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHH
Confidence            88877666666442     12211     011122333445567788999999999999999999999999999 88888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHHHH
Q 015392          332 LCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIW  394 (408)
Q Consensus       332 l~~~ll~~ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~iw  394 (408)
                      ++..+..++.....+.+....+++   .|.++..+.+..+.+++..++.+ ++..+.|.++.|
T Consensus       224 ~~~~~~~~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~  282 (300)
T PRK13106        224 FAGLNQLFSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK-GDFGRAFYYNIY  282 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccH
Confidence            877777666666666655555443   45556667777888999888876 444466655533

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.4e-35  Score=285.26  Aligned_cols=259  Identities=17%  Similarity=0.147  Sum_probs=203.7

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CCCcc
Q 015392          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL  188 (408)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl  188 (408)
                      ++++|+|++||++.+..+..++.|.++|.+...  ++.   .+++.+++.+++++++|++||+.|+|+|++|+  ++||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            478999999999999999999999999854322  221   24456668899999999999999999999995  59999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHH
Q 015392          189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  268 (408)
Q Consensus       189 ~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~  268 (408)
                      |+|++|++||+.+.+++.++++.+++++|+.++.++. ..+.+...|+.      +||++.++++.++...|..+.+|+.
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~  149 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL  149 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence            9999999999999999999999999999998877664 45666666764      7999999999888888866656654


Q ss_pred             HHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 015392          269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  348 (408)
Q Consensus       269 ~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~  348 (408)
                      ++      ++...+....+++.+...+|+.++|++|+++|+|+|++.|+||+|+++|++++.++...+..++.....+.+
T Consensus       150 Av------~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g  223 (286)
T PRK12895        150 AV------IPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISG  223 (286)
T ss_pred             HH------cCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHH
Confidence            32      222222222334456667788999999999999999999999999999999998776666655555555545


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhh-HHHHH
Q 015392          349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFYM  391 (408)
Q Consensus       349 ~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~-~~f~~  391 (408)
                      ....    ..++.++..+.+..+.+|++.+|.+|.+.| ..||+
T Consensus       224 ~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~  263 (286)
T PRK12895        224 IYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFN  263 (286)
T ss_pred             HHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            4332    345667778888889999999999998888 55554

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=1.4e-34  Score=282.51  Aligned_cols=261  Identities=17%  Similarity=0.210  Sum_probs=201.1

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCC--CCCCcc
Q 015392          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPDLPL  188 (408)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in--kp~RPl  188 (408)
                      ++++|++++||++.++....+..|.++|.+...  ++.   .+++++++.+++++++|++||++|+|+|++|  +|+||+
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence            368999999999999998888889998855332  332   2566788999999999999999999999999  579999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHH
Q 015392          189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  268 (408)
Q Consensus       189 ~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~  268 (408)
                      ++|++|+++++.+++++.++++.+++.+|+.+..++. .+.++.+.|+.      +||++.++++..+...+..+..|+.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~  148 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSP-LVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV  148 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888888888888988776654 45666889984      7999999999888776665556654


Q ss_pred             HHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 015392          269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  348 (408)
Q Consensus       269 ~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~  348 (408)
                      +.     .|. .......+...+...+|+.+.+++||++|+|+|+++|+||+|+++|+|++.++...+..+++....+.+
T Consensus       149 a~-----~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (282)
T TIGR01475       149 AV-----IGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG  222 (282)
T ss_pred             HH-----hCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            32     122 221122334455566778889999999999999999999999999999998887777777776666555


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHH-HHHH
Q 015392          349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMF  392 (408)
Q Consensus       349 ~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~-f~~~  392 (408)
                      .....++   .+.++..+.+..++++.+..|.++++.+++ |+..
T Consensus       223 ~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~  264 (282)
T TIGR01475       223 FYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYA  264 (282)
T ss_pred             HHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            5544443   444555556677788888888888877764 4443

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=7.4e-34  Score=277.45  Aligned_cols=222  Identities=20%  Similarity=0.231  Sum_probs=173.7

Q ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCccccc
Q 015392          113 HALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASG  191 (408)
Q Consensus       113 ~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG  191 (408)
                      ++|++++||++++..++++++|.++|...... +++.  ..++.++++..+.++++|++|||+|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~--~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWW--LMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            46899999999999999999999888422222 3332  12344677999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHHHH
Q 015392          192 DLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHF  271 (408)
Q Consensus       192 ~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~~~  271 (408)
                      ++|+++++.+.+++..+++.+++.++.+...+..+++++++++||  .||+|+||+++++++.++..++.....+.+.  
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~--  154 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA--  154 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHHHHH--
Confidence            999999999999999999999988877663332346788899999  5899999999999988776554332222211  


Q ss_pred             HHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 015392          272 QKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI  346 (408)
Q Consensus       272 ~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~  346 (408)
                         +.+ ..  +...++..+..++++.+++++||++|+|+|+++|+||+|+++|+|++.+++..++.++|+..+.
T Consensus       155 ---~~~-~~--~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  223 (283)
T TIGR01476       155 ---IFA-PL--TWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG  223 (283)
T ss_pred             ---HhC-CC--CHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence               112 12  2233444555666788889999999999999999999999999999999888877777765543

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=3.9e-34  Score=280.10  Aligned_cols=265  Identities=16%  Similarity=0.143  Sum_probs=198.2

Q ss_pred             HHHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC-
Q 015392          108 LLKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-  183 (408)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~---l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-  183 (408)
                      .++++++|++++||++..++.   ++++.|.++|.+..+  ++.   .+++++++.+++++++|++||++|+|+|+.|+ 
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            456889999999999987766   577888888854322  222   24567789999999999999999999998755 


Q ss_pred             C-CCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392          184 P-DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (408)
Q Consensus       184 p-~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~  262 (408)
                      + +||+|+|++|++|++.+++++.++++.+++.+|+.++.+++ .+.++.++||.      .||++.++++.++...+..
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~  152 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA  152 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence            3 89999999999999999999999999999999988877765 46677889985      7999988998877777766


Q ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHH
Q 015392          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (408)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~  342 (408)
                      +..|+.+.     .|. .  +...+++.+...+|+.+.+++++++|+|+|+++|+||+|+++|++++.+++.. ..++..
T Consensus       153 ~l~g~~a~-----~g~-~--~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~-~~~~~~  223 (290)
T PRK12870        153 VLISWSAV-----TGH-L--DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLF-FALTVG  223 (290)
T ss_pred             HHHHHHHH-----cCC-C--CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHH-HHHHHH
Confidence            55555432     122 2  22334455666778899999999999999999999999999999998876653 333333


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc--cCCChHhhHHHHH-HHHHH
Q 015392          343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV--DLSNNASTYSFYM-FIWKL  396 (408)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~--d~~~~~~~~~f~~-~iw~l  396 (408)
                      .....+.....++   .+.++..+.+..+.++...+  |.++++.|..||+ +.|-.
T Consensus       224 ~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~g  277 (290)
T PRK12870        224 FLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWIG  277 (290)
T ss_pred             HHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHHH
Confidence            3334444444333   34455566677788888888  7667777765554 34433

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.9e-33  Score=275.23  Aligned_cols=266  Identities=19%  Similarity=0.182  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhccc---CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCC
Q 015392          106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQS---FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN  182 (408)
Q Consensus       106 ~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~---~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in  182 (408)
                      +++++++++|+|++||++.+.++..++.|.++|...   ...+++.   .+++++++.+++++++|++|||+|+|+|++|
T Consensus         2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~   78 (291)
T PRK12874          2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDN   78 (291)
T ss_pred             chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence            467889999999999999999999999999887521   1123433   2567778899999999999999999999999


Q ss_pred             C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHH
Q 015392          183 K--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG  260 (408)
Q Consensus       183 k--p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g  260 (408)
                      +  ++||+++|++|+++++.+++++.++++.+++.+|+.+..+++ ..+++...|+.      +||++.++++..+...+
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~  151 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSF-PFLIVLGGYSY------FKRFSSLAHLVLGLSLG  151 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------hcccccccHHHHHHHHH
Confidence            8  599999999999999999999988888888888988777664 56677889995      79999999998887777


Q ss_pred             HHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHH
Q 015392          261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA  340 (408)
Q Consensus       261 ~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~a  340 (408)
                      ..+.+|+.++      ++..  +...+++.+.+.+|+.+.+++++++|+|+|+++|++|+|+++|++++.++......+.
T Consensus       152 ~~~l~G~~av------~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~  223 (291)
T PRK12874        152 LAPIAGVVAV------LGEI--PLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLA  223 (291)
T ss_pred             HHHHHHHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHH
Confidence            7666775442      2222  2223344556678888999999999999999999999999999999887655544433


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHH
Q 015392          341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF  392 (408)
Q Consensus       341 y~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~  392 (408)
                      .+.....+......   ..+.++..+.+..++++.+..+.++++.++.||..
T Consensus       224 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~s  272 (291)
T PRK12874        224 VLFWLLFVWCAHLG---LFAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTL  272 (291)
T ss_pred             HHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            33333333322222   23334555556667777777766666677776554

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=3e-33  Score=281.39  Aligned_cols=222  Identities=21%  Similarity=0.291  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCC
Q 015392          107 VLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPK-YFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPD  185 (408)
Q Consensus       107 ~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~-~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~  185 (408)
                      ...+++++|++++||++++..++++++|.+.. +.. ++.+. +...++.++++..++++++|++|||+|+|+|++|+|+
T Consensus        80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~  157 (375)
T PLN00012         80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY  157 (375)
T ss_pred             cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence            35678999999999999999999999999853 221 11111 1112356777888999999999999999999999999


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHhh-------ChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHH
Q 015392          186 LPLASGDLSMGTGLAITLTLSLTSLAIALSL-------QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTV  258 (408)
Q Consensus       186 RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~l-------g~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~  258 (408)
                      ||+++|++|+++++.+..++.++++.+++.+       +++.+.+++ ++++++++||  .||+++||++++|++.++..
T Consensus       158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l-~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~  234 (375)
T PLN00012        158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLAL-GGSLLSYIYS--APPLKLKQNGWIGNYALGAS  234 (375)
T ss_pred             CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHHhhhhc--CCchhhhHhccHhHHHHHHH
Confidence            9999999999999997777666666665543       343444443 5777899999  58999999999999877666


Q ss_pred             HHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHH
Q 015392          259 FGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALF  338 (408)
Q Consensus       259 ~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~  338 (408)
                      ++....++.+.     +.|.   .+...+++.++.+++++++++.||++|+|+|+++|++|+||++|++++.+++..++.
T Consensus       235 ~~~lp~~~g~a-----~~g~---~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~  306 (375)
T PLN00012        235 YISLPWWAGQA-----LFGT---LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID  306 (375)
T ss_pred             HHHHHHHHHHH-----HcCC---CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence            55433322111     2232   223344445566678889999999999999999999999999999999988765444


Q ss_pred             HHH
Q 015392          339 FAY  341 (408)
Q Consensus       339 ~ay  341 (408)
                      +..
T Consensus       307 l~~  309 (375)
T PLN00012        307 ITQ  309 (375)
T ss_pred             HHH
Confidence            443

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.5e-33  Score=274.76  Aligned_cols=253  Identities=19%  Similarity=0.235  Sum_probs=190.0

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCcccc
Q 015392          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS  190 (408)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~s  190 (408)
                      ++++|++++||+++..++++++.|.++|.+..  .++.   .+++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFK--IDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCC--cchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            46899999999999999999999999885422  2322   246677899999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHHH
Q 015392          191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  270 (408)
Q Consensus       191 G~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~~  270 (408)
                      |++|+++++.+++++.++++.+++.+|+.+..+++ ++.++.++||.     ++||++.++|++++...|..+..|....
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~  150 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIAL-LNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV  150 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988877765 46777899984     4899999999999988887766665432


Q ss_pred             HHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 015392          271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  350 (408)
Q Consensus       271 ~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~~~  350 (408)
                            +.  .  ...+++.....+++++++++||++|+|+|+++|+||+|+++|+|++.++......+......+....
T Consensus       151 ------~~--~--~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~  220 (279)
T PRK09573        151 ------FN--V--LRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFL  220 (279)
T ss_pred             ------cc--c--hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  11  1  1222334444566778899999999999999999999999999999887765554444443322221


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHH-HHccCCChHhhH
Q 015392          351 SSFQLVKLVSIIGHSTLAFLLWLRA-QTVDLSNNASTY  387 (408)
Q Consensus       351 ~~~~~~~~~~~~~~~ila~~l~~~~-~~~d~~~~~~~~  387 (408)
                      .   ..+..|.++..++...+.++. +..+.++++.++
T Consensus       221 ~---~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~  255 (279)
T PRK09573        221 G---IFGIYYLIVVIICDILFIIAMLILLKNPSIEGAS  255 (279)
T ss_pred             H---HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH
Confidence            1   123345555555555556553 334444555444

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.6e-33  Score=274.78  Aligned_cols=259  Identities=15%  Similarity=0.124  Sum_probs=198.2

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcc-cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CCCc
Q 015392          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQ-SFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLP  187 (408)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~-~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RP  187 (408)
                      ++++|++++||++.+.+...++.|.+.+.. ....+++.   .+++..++.+++++++|++||++|+|+|++|+  ++||
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP   77 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE   77 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence            368999999999988877776666666531 11123332   24567889999999999999999999999998  5999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHH
Q 015392          188 LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF  267 (408)
Q Consensus       188 l~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~  267 (408)
                      +|+|++|+++++.+.+.+.++++.++..+|+.++.++. ++++....|+.      .||++.++++..+...+..+..|+
T Consensus        78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~  150 (284)
T PRK12888         78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAW  150 (284)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHH
Confidence            99999999999999998888888888888988777654 45566778985      799999999988777665555554


Q ss_pred             HHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 015392          268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV  347 (408)
Q Consensus       268 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~  347 (408)
                      .++     .|. .  +...+++.+...+|+.+.+++|+++|+|+|++.|+||+|+++|++++.++...+..+.++...+.
T Consensus       151 ~a~-----~g~-~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~  222 (284)
T PRK12888        151 IAV-----TGT-W--SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWF  222 (284)
T ss_pred             HHH-----cCC-C--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHH
Confidence            332     122 2  22344555667788889999999999999999999999999999999887766666666555555


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhH-HHH
Q 015392          348 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFY  390 (408)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~-~f~  390 (408)
                      +.....++   ++.++..+.+..+.+|++.+|.+|.+.|. .||
T Consensus       223 ~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff  263 (284)
T PRK12888        223 GLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFF  263 (284)
T ss_pred             HHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence            55544443   44456667778889999999998877764 665

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=2.9e-33  Score=276.86  Aligned_cols=226  Identities=21%  Similarity=0.256  Sum_probs=176.0

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHH-HHHHHHHHHHHHHHHhhhhhccccccccCCCCCC
Q 015392          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFME-FLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL  186 (408)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~-~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~R  186 (408)
                      .++++++|++++||++++.++++.+.|.+.+..  .++....... ++.++++..++++++|++|||+|+|+|++|+|+|
T Consensus        23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R  100 (314)
T PRK07566         23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR  100 (314)
T ss_pred             cchHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence            467889999999999999999888888876532  1222111111 2445677888999999999999999999999999


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHH
Q 015392          187 PLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS  266 (408)
Q Consensus       187 Pl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G  266 (408)
                      |+++|++|+++++.+++++.++++.+++.+|++.+.+++ ++++++++||  .||+++||+++++++.+++.++....++
T Consensus       101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l-~~~~~~~~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~  177 (314)
T PRK07566        101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAAL-LGLFLAWIYS--APPLRLKQNGWLGNYAVGLSYEGLPWWA  177 (314)
T ss_pred             CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHH-HHHHHHHHhc--CCccccccccchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999987776654 5777899999  5899999999999998887765543322


Q ss_pred             HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHH
Q 015392          267 FFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS  344 (408)
Q Consensus       267 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~  344 (408)
                      ...     ..+. ...+...++..++..++..+++++||++|+|+|+++|+||+|+++|++++.+++..++.++|+..
T Consensus       178 g~~-----~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~  249 (314)
T PRK07566        178 GAA-----AFGA-GLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV  249 (314)
T ss_pred             HHH-----Hhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence            111     1121 11222334445555667788899999999999999999999999999999998877777776654

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.3e-33  Score=272.17  Aligned_cols=256  Identities=19%  Similarity=0.290  Sum_probs=193.7

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCccc
Q 015392          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA  189 (408)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~  189 (408)
                      +++++|++++||++++.+.++++.|.++|.+..+   +.   .+++++++.+++++++|++||++|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            5789999999999999999999999999864322   11   24567789999999999999999999999999999999


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHH
Q 015392          190 SGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFI  269 (408)
Q Consensus       190 sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~  269 (408)
                      +|++|+++++.+++++.++++++++.+|+..+.+++ ++.++++.||.     ++||++++++++++...+..+..|...
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~  149 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVI-LVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA  149 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999989988777654 57788999995     489999889998887776555555432


Q ss_pred             HHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHH
Q 015392          270 HFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA  349 (408)
Q Consensus       270 ~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~~  349 (408)
                            .+...   ...+.+.....++..+.++.+|++|+|+|+++|+||+|+++|++++.++...+..+.++...+...
T Consensus       150 ------~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~  220 (279)
T PRK12884        150 ------VGELN---EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL  220 (279)
T ss_pred             ------hCCCc---hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  12211   133444455566777889999999999999999999999999999998877776666655444333


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHH-HHccCCChHhhHHH
Q 015392          350 SSSFQLVKLVSIIGHSTLAFLLWLRA-QTVDLSNNASTYSF  389 (408)
Q Consensus       350 ~~~~~~~~~~~~~~~~ila~~l~~~~-~~~d~~~~~~~~~f  389 (408)
                      ....++   .+.+...+....+.++. +..+.+|++.++.+
T Consensus       221 ~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  258 (279)
T PRK12884        221 FGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKV  258 (279)
T ss_pred             HHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            333333   33344444444555554 44555555555544

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.4e-33  Score=274.54  Aligned_cols=259  Identities=21%  Similarity=0.245  Sum_probs=188.5

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCcccc
Q 015392          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS  190 (408)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~s  190 (408)
                      ++++|++++||++...++++.+.|.++|.+..++  ..   ..++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--PS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--HH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            4789999999999999999999999998543221  11   145678899999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHHH
Q 015392          191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  270 (408)
Q Consensus       191 G~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~~  270 (408)
                      |++|+++++.+++++.++++++++.+|+.++.+++ ++.++.++||.     |+||++.++|+.++...|..+.+|... 
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~-~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~-  150 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIAL-FNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA-  150 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999999999987777654 46667889985     589999999998877666554444322 


Q ss_pred             HHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 015392          271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  350 (408)
Q Consensus       271 ~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~~~  350 (408)
                           .+...  ....+.+.+..+++..+++++||++|+|+|+++|+||+|+++|+|++.++......+......+....
T Consensus       151 -----~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~  223 (276)
T PRK12882        151 -----VGTEG--LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL  223 (276)
T ss_pred             -----hcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 12111  11222333444456778999999999999999999999999999999887666654444333221112


Q ss_pred             hhhhhHHHHHHHHHHHHH-HHHHHHHHHccCCChHhhHHHHH
Q 015392          351 SSFQLVKLVSIIGHSTLA-FLLWLRAQTVDLSNNASTYSFYM  391 (408)
Q Consensus       351 ~~~~~~~~~~~~~~~ila-~~l~~~~~~~d~~~~~~~~~f~~  391 (408)
                      ...+   ..+.+...+.. ..+....+..|.++++.++++|+
T Consensus       224 ~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~  262 (276)
T PRK12882        224 STFG---LWYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLK  262 (276)
T ss_pred             HHhh---HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            2222   23333333333 33334556667777666655433

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.1e-33  Score=271.71  Aligned_cols=266  Identities=19%  Similarity=0.160  Sum_probs=197.0

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CC
Q 015392          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD  185 (408)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~  185 (408)
                      ..+++++|+|++||++......+++.|.++|.+..++  +.   .++++.++.+++++++|++|||+|+|+|++|+  ++
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            4577899999999999999988899999998543332  21   24567789999999999999999999999998  58


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHH
Q 015392          186 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF  265 (408)
Q Consensus       186 RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~  265 (408)
                      ||+++|++|++++..+.+.+.+.++.+++.+|+++..+++ ++.++...|+.      .||++.++++..+...+..+..
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~  151 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG  151 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence            9999999999999998777777777777788988877765 36666889995      7999999998777665655445


Q ss_pred             HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHH
Q 015392          266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV  345 (408)
Q Consensus       266 G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~  345 (408)
                      |+++.     .| ..  +...+++.+.+.+|+.+.+++++++|+|+|+++|+||+|+++|++++.++......+.+...+
T Consensus       152 g~~a~-----~g-~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~  223 (291)
T PRK12886        152 AWIAI-----RG-TI--ELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF  223 (291)
T ss_pred             HHHHH-----cC-CC--cHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence            54331     12 22  223344455566778888999999999999999999999999999998877666666665555


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC-hHhhHH-HHHHHHHH
Q 015392          346 IVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN-NASTYS-FYMFIWKL  396 (408)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~-~~~~~~-f~~~iw~l  396 (408)
                      +.+.....++   ++.++..+....+.++.+..+.+| ++.++. |..++|-.
T Consensus       224 ~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~  273 (291)
T PRK12886        224 ALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYIS  273 (291)
T ss_pred             HHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHHH
Confidence            5554444333   344455555556667777777766 345555 44444433

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=6.1e-33  Score=271.18  Aligned_cols=262  Identities=22%  Similarity=0.141  Sum_probs=196.3

Q ss_pred             HHHHHHHHhhhccchHHHHHHHH---HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--
Q 015392          109 LKKLHALYVFTRPFAMIGTIVGI---TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--  183 (408)
Q Consensus       109 ~~~l~~y~~l~Rp~~~~~~~l~~---l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--  183 (408)
                      ++++++|+|++|.++..++.+..   ..|..++.......++.   .+++..++.+++++++|++||++|+|+|++|+  
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT   79 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVERT   79 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence            46889999999999987775544   45555553111112222   14567789999999999999999999999875  


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHH
Q 015392          184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (408)
Q Consensus       184 p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~  263 (408)
                      |+||+|+|++|+++++.+.+++.++++.+++.+|..++.+++ +++++.+.||.      +||++.++++..+...+..+
T Consensus        80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~  152 (289)
T PLN02809         80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGA-SSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGA  152 (289)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HHhcCcchHHHHHHHHHHHH
Confidence            599999999999999999999999999999989987777765 56777889985      89999999987776666555


Q ss_pred             HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 015392          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (408)
Q Consensus       264 ~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~  343 (408)
                      .+|+.+     +.|.. .. ...+.+.....+|+.+.+++++++|+|+|++.|+||+|+++|++...+++. +..+++..
T Consensus       153 l~g~~a-----v~g~~-~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~  224 (289)
T PLN02809        153 LLGWAA-----VKGSL-DP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGG  224 (289)
T ss_pred             HHHHHH-----HhCCC-Ch-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHH
Confidence            555532     22322 11 222224455566788899999999999999999999999999997766653 44555555


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHH
Q 015392          344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM  391 (408)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~  391 (408)
                      ....+.....++   .+.+++.+.+..+++|++.+|.+|+++|.++|+
T Consensus       225 l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~  269 (289)
T PLN02809        225 LALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV  269 (289)
T ss_pred             HHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            545555444432   344577778888999999999999988866554

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=1.6e-32  Score=272.51  Aligned_cols=255  Identities=18%  Similarity=0.282  Sum_probs=179.6

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccC-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCC
Q 015392          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSF-ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL  186 (408)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~-~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~R  186 (408)
                      +.+++|+|++++||++++ ..++.++|.++|.+.. ++.....+ .+...++...+..+++|++|||+|+|+|++|+|.|
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            567899999999999888 5666777777775321 22221111 12223334455667889999999999999999999


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHhhCh-------hHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHH
Q 015392          187 PLASGDLSMGTGLAITLTLSLTSLAIALSLQS-------PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF  259 (408)
Q Consensus       187 Pl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~-------~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~  259 (408)
                      |+++|++|+++++.+.+++.++++.+++.++.       +.+++..+++++++++||  .||+++||+++.++..++..+
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS--~~P~~lKr~~~~g~~~vGl~~  163 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYS--APPLKLKKNILTSAPAVGFSY  163 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhc--CCchhhhccchhHHHHHHHHH
Confidence            99999999999999999999988887776542       222332346788999999  489999999988888777666


Q ss_pred             HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHH
Q 015392          260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  339 (408)
Q Consensus       260 g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~  339 (408)
                      +....++...     ..+.   .+...++..+...+++.+++++||++|+|+|++.|+||+|+++|++++.+++.....+
T Consensus       164 ~~~~~~~~~a-----~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~  235 (331)
T PRK12392        164 GFITFLSANA-----LFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL  235 (331)
T ss_pred             HHHHHHHHHH-----HhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence            6544333221     2232   2233444555667788899999999999999999999999999999998887666545


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015392          340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQT  377 (408)
Q Consensus       340 ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~  377 (408)
                      ..+..+..+.....++.   +....++++..+++|.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~l  270 (331)
T PRK12392        236 VFAVFAWLAWSWGFTVL---MYFILVGLVLNIVIQIQL  270 (331)
T ss_pred             HHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHHH
Confidence            55555555555444432   223334444445555543

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.8e-32  Score=267.34  Aligned_cols=285  Identities=16%  Similarity=0.154  Sum_probs=202.3

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcc---cCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--
Q 015392          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQ---SFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--  183 (408)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~---~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--  183 (408)
                      ++++.|.++.|.++.+.++--+..|.++|..   .... +++.-+..+++..++.+++++++|++||+.|+|+|++|+  
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT   81 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRT   81 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCC
Confidence            4689999999998877777777888888841   0011 001112235678889999999999999999999999999  


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHH
Q 015392          184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (408)
Q Consensus       184 p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~  263 (408)
                      ++||+|+|++|+++|+.+.+++.++++++++++|+.++.+++ +++++.+.||.      +||+++++++..+...+..+
T Consensus        82 ~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~~~~~~  154 (300)
T PRK12876         82 SSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLVYYLAI  154 (300)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHHHHHHH
Confidence            499999999999999999988888888888999998888775 46666789985      89999999988777766655


Q ss_pred             HHHHHHHHHHHhhcCcccchH--HHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHH
Q 015392          264 QFSFFIHFQKYVLGRPVVITR--PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY  341 (408)
Q Consensus       264 ~~G~~~~~~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay  341 (408)
                      ..|+.++     .+++..+..  ..++..+...++..++|++|+++|+|+|++.|+||+|+++|++++.++...+..++.
T Consensus       155 l~~~~Av-----~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~  229 (300)
T PRK12876        155 LMNFFAI-----IETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASA  229 (300)
T ss_pred             HHHHHHH-----hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHH
Confidence            5555432     233221100  112233444556778999999999999999999999999999988777666666665


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHH--HHHHHHHHHccCCChHhhHHHHHH---HHHHHHHHHHHhhhcC
Q 015392          342 GVSVIVGASSSFQLVKLVSIIGHSTLA--FLLWLRAQTVDLSNNASTYSFYMF---IWKLFYAEYLLIHFLR  408 (408)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~ila--~~l~~~~~~~d~~~~~~~~~f~~~---iw~l~~~~y~~~p~~~  408 (408)
                      +..++.+.....++.  .+..+..+.+  ..+.++.+.+|.++++.|..||+.   +=-++++.++..+.+|
T Consensus       230 ~~l~~~g~~~~l~~~--~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~~~  299 (300)
T PRK12876        230 IAYLLIGYFVSNKKI--FYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMIGLFLLR  299 (300)
T ss_pred             HHHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHHHHHccC
Confidence            555555655555442  2333333222  223455566777777778777665   4344556666666654

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=2.1e-32  Score=267.42  Aligned_cols=266  Identities=18%  Similarity=0.187  Sum_probs=194.6

Q ss_pred             HHHHHHHHHhhhccchHHH---HHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC-
Q 015392          108 LLKKLHALYVFTRPFAMIG---TIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-  183 (408)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~---~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-  183 (408)
                      +++++++|++++||+++.+   ..++++.|.++|.... ..++.   ..++++++.+++++++|++|||+|+|+|++|+ 
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R   78 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR   78 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence            4567999999999998765   4567788888885432 13332   24677889999999999999999999999766 


Q ss_pred             -CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392          184 -PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (408)
Q Consensus       184 -p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~  262 (408)
                       ++||+++|++|+++++.+++++.++++.+++.+|+.++.+++ ++.++++.||.      .||++.++++..+...+..
T Consensus        79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~  151 (285)
T PRK12847         79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSF-IAVILIVLYPL------MKRFFYWPQLFLGFTFNMG  151 (285)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence             489999999999999999999999999999889988777765 56777999985      7999988998777666654


Q ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHH
Q 015392          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (408)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~  342 (408)
                      +..|+.+.      ++..  +...+++.+...+|+.+.+++++++|+|+|+++|+||+|+++|++++.++........+.
T Consensus       152 ~l~~~~a~------~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~  223 (285)
T PRK12847        152 ILMAFAAV------QNQL--DIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL  223 (285)
T ss_pred             HHHHHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence            44444332      2222  233444555667788899999999999999999999999999999998877766555554


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHH-HHHHHHHH
Q 015392          343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMFIWKL  396 (408)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~-f~~~iw~l  396 (408)
                      ..++ +.......  ..+ ++.++....++++...+|.+|++.++. |....+.+
T Consensus       224 ~~~~-~~~~~~~~--~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  274 (285)
T PRK12847        224 WLIL-GIISSLHN--IFY-LAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYVG  274 (285)
T ss_pred             HHHH-HHHhcCcH--HHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHHH
Confidence            4333 33222211  112 233334456777777888877666554 44344433

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=1.6e-32  Score=267.94  Aligned_cols=263  Identities=19%  Similarity=0.189  Sum_probs=193.6

Q ss_pred             HHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--
Q 015392          109 LKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--  183 (408)
Q Consensus       109 ~~~l~~y~~l~Rp~~~~~~~---l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--  183 (408)
                      ++++++|++++|++++....   ++++.|.++|.+..++  +.   .+++++++.+++++++|++||++|+|+|++|+  
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt   76 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT   76 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence            35789999999987765544   4567788887543222  22   14566778899999999999999999999765  


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHH
Q 015392          184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (408)
Q Consensus       184 p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~  263 (408)
                      ++||+|+|++|++++..+++++.++++.+++.+|+.+..+++ .+.++.+.|+.      .||++.++++..+...+..+
T Consensus        77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~  149 (282)
T PRK12848         77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSV-AALALAWIYPF------MKRYTHLPQVVLGAAFGWGI  149 (282)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence            489999999999999999999999999999989988777664 46667889974      79999889987777777666


Q ss_pred             HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 015392          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (408)
Q Consensus       264 ~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~  343 (408)
                      .+|+.+.      ++..  +...+++.+...+|....++.++++|+|+|+++|+||+|+++|++++.++.... .+....
T Consensus       150 ~~g~~a~------~~~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~-~~~~~~  220 (282)
T PRK12848        150 PMAFAAV------QGSV--PLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQ-LATLAL  220 (282)
T ss_pred             HHHHHHH------hCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHH-HHHHHH
Confidence            5665432      2222  223344455667778889999999999999999999999999999887765333 333333


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHH-HHHHHHH
Q 015392          344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMFIWK  395 (408)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~-f~~~iw~  395 (408)
                      ..+.+.....+   ..+.++..+....+.++...+|.++++.|.+ |+++.|.
T Consensus       221 ~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~~  270 (282)
T PRK12848        221 LAWAGWLLGLG---WAYYWGLLVAAALFVYQQKLIRDREREACFKAFLNNNWV  270 (282)
T ss_pred             HHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcHH
Confidence            33333333332   3455566677778888998888888777754 4444443

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=3e-32  Score=266.89  Aligned_cols=274  Identities=23%  Similarity=0.298  Sum_probs=207.4

Q ss_pred             HHHHHHHHHhhhccchHHHH---HHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCC
Q 015392          108 LLKKLHALYVFTRPFAMIGT---IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP  184 (408)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~---~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp  184 (408)
                      .+++++.+.+++|+++++.+   ..+..+|..++....++     +...++++++++++++++|++||++|+|+||+|+|
T Consensus         6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r   80 (289)
T COG0382           6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPR   80 (289)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence            44555666666666555554   44556666666532222     23467788899999999999999999999999998


Q ss_pred             --CCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392          185 --DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (408)
Q Consensus       185 --~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~  262 (408)
                        +||+|+|++|+++++.+.+++.++++.+++.+|++++.+.+ ++.++.+.|.      ++||.+.+++++++..++..
T Consensus        81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~-~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~  153 (289)
T COG0382          81 TKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSL-AALVLALAYP------FLKRFTFLPQLVLGLAFGLG  153 (289)
T ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH------HhhcCCchHHHHHHHHHHHH
Confidence              99999999999999999999999999999999998876654 6888999995      38999999999999888877


Q ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHH
Q 015392          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (408)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~  342 (408)
                      +..|+.+.      ++.  .....+++.++..+++++++++||++|+|+|++.|+||+|+.+|++++.+++.... ...+
T Consensus       154 ~~~g~~a~------~~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~  224 (289)
T COG0382         154 ALAGAAAV------GGS--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASA  224 (289)
T ss_pred             HHHHHHHH------hCc--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHH
Confidence            77776542      221  12345566777788899999999999999999999999999999999998877666 3333


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHHHHHHHHHHHHHh
Q 015392          343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLI  404 (408)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~~  404 (408)
                      ....++......  ...+..++.+.+..+.++...+|.++++.+..++..-..+-...++..
T Consensus       225 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (289)
T COG0382         225 LLVLLGLLAGLL--GLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFIGL  284 (289)
T ss_pred             HHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHHHHHHHHHH
Confidence            333333333222  135666777777788888888888777788777766555544444443

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.8e-32  Score=265.62  Aligned_cols=268  Identities=16%  Similarity=0.250  Sum_probs=198.3

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC-----C
Q 015392          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-----P  184 (408)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-----p  184 (408)
                      .+++.|++.+||++++.++.++++|.++|.....++++..   .++++++.+++++++|.+|||+|.|.|..|+     |
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            3688999999999999999999999999965434667643   5677889999999999999999966655554     7


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHH----HhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHH
Q 015392          185 DLPLASGDLSMGTGLAITLTLSLTSLAIA----LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG  260 (408)
Q Consensus       185 ~RPl~sG~iS~~~a~~~~~~~~~l~l~l~----~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g  260 (408)
                      +||+++|++|++++..+.+++..+++.++    +..+++.+.++ ++++++++.||  .||+++|+++ +|++.++..+|
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt--~~P~~lky~g-lGe~~v~~~~g  154 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYM--GPPFFLKYRW-LGEHLVFYAWS  154 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHc--CCCcccCCCC-chHHHHHHHHH
Confidence            89999999999999998888766665443    33465555555 46889999999  5899999886 48988888888


Q ss_pred             HHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHH
Q 015392          261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA  340 (408)
Q Consensus       261 ~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~a  340 (408)
                      ..+++|.+.+.     ++..  +...+...+.+++++....+.||++|+|+|++.|+||+|+++|++++ ++...+...+
T Consensus       155 ~~~vlg~~~~~-----~~~~--~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~  226 (296)
T PRK05951        155 HMLVMGLIYVW-----LGNL--SSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSP  226 (296)
T ss_pred             HHHHHHHHHHH-----hCcc--cHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHH
Confidence            87777765431     2222  22334445566667778889999999999999999999999999999 6666666777


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHH
Q 015392          341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF  392 (408)
Q Consensus       341 y~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~  392 (408)
                      |+..+........++..+++.+++......+.++.+..|.++.+.+...+..
T Consensus       227 ~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (296)
T PRK05951        227 YVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML  278 (296)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence            7766655555445555555666655555445555555565555555454443

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=7.2e-32  Score=266.62  Aligned_cols=266  Identities=16%  Similarity=0.140  Sum_probs=196.0

Q ss_pred             hHHHHHHHHHHHhhh---ccchHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 015392          105 WDVLLKKLHALYVFT---RPFAMIGTIVGITSIAILPLQSF---ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEI  178 (408)
Q Consensus       105 ~~~~~~~l~~y~~l~---Rp~~~~~~~l~~l~g~~lA~~~~---~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~  178 (408)
                      .+.+++++++|++++   ||+......++++.|.++|....   ...++.   .+++++++.+++++++|++|||+|+|+
T Consensus        23 ~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~i   99 (314)
T PRK12878         23 DRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDI   99 (314)
T ss_pred             hhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344778999999999   88888888999999999985421   123322   256778899999999999999999999


Q ss_pred             ccCCC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHH
Q 015392          179 DKVNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMV  256 (408)
Q Consensus       179 D~ink--p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~  256 (408)
                      |+.|+  ++||+++|++|+++++.+.+++.++++.+.+..|++++.+++ +++++.+.|+.      .||++.+++...+
T Consensus       100 D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~~G  172 (314)
T PRK12878        100 DAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGI-ASLAIVAAYPF------MKRITWWPQFFLG  172 (314)
T ss_pred             ccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhcCCcchHHHH
Confidence            98776  489999999999999999999999999998888988777765 57777999985      7998888887666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHH
Q 015392          257 TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA  336 (408)
Q Consensus       257 ~~~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l  336 (408)
                      ...+....+|+++.     .| ...  ...+.+.+...+|+...+.+++++|+|+|+++|+||+|+++|++++.++....
T Consensus       173 l~~~~~~l~g~~a~-----~g-~~~--~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~  244 (314)
T PRK12878        173 LAFSWGALMGWAAH-----FG-SLS--LAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFY  244 (314)
T ss_pred             HHHHHHHHHHHHHH-----hC-CCc--hHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHH
Confidence            55555444564432     12 222  22334444556678888999999999999999999999999999998876444


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHH
Q 015392          337 LFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF  392 (408)
Q Consensus       337 l~~ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~  392 (408)
                      .... ....+.+.....++.   +.++...+...+.++..++|.++++.|+++|+.
T Consensus       245 ~~~~-~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~  296 (314)
T PRK12878        245 GLAV-LLMGLAFWLAGVPLL---ALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKS  296 (314)
T ss_pred             HHHH-HHHHHHHHHhcCcHH---HHHHHHHHHHHHHHHHHHcccCChHHHHHHHHH
Confidence            3333 333333333333433   333444445557788888887777766655543

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=5.5e-32  Score=266.90  Aligned_cols=225  Identities=21%  Similarity=0.295  Sum_probs=173.8

Q ss_pred             HHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhccccccccCCC
Q 015392          107 VLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKY---FMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK  183 (408)
Q Consensus       107 ~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~---l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink  183 (408)
                      ...+++++|++++||++++..+++++.|...+. .   +++..   ...++.++++..++++++|.+|||+|+|+|+.|+
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~-~---~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~   86 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAASG-N---FHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE   86 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHHHHcC-C---CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence            356778999999999999999999999988642 2   22211   1113445678899999999999999999999999


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhC-------hhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHH
Q 015392          184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ-------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMV  256 (408)
Q Consensus       184 p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg-------~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~  256 (408)
                      |+||+++|++|+++++.+++.+.++++.+++.+.       ++.+.++ +++++++++||  .||+++||++++|++.++
T Consensus        87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~-~~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg  163 (306)
T TIGR02056        87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA-LFGSFIAFIYS--APPLKLKQNGWLGNFALG  163 (306)
T ss_pred             CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHHc--CChhhhhhcccHHHHHHH
Confidence            9999999999999999999888888887776543       3444444 36788899999  589999999988998877


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHH
Q 015392          257 TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA  336 (408)
Q Consensus       257 ~~~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l  336 (408)
                      ...+..+..+.+.     +.| .  .+...++..+..++++.++++.||++|+|+|++.|+||+|+++|++++.+++..+
T Consensus       164 ~~~~~~~~~~~~a-----~~g-~--~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l  235 (306)
T TIGR02056       164 ASYIALPWWAGHA-----LFG-E--LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGA  235 (306)
T ss_pred             HHHHHHHHHHHHH-----HhC-C--CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHH
Confidence            6665444433221     122 2  2233444555666788899999999999999999999999999999999988877


Q ss_pred             HHHHHHHHHH
Q 015392          337 LFFAYGVSVI  346 (408)
Q Consensus       337 l~~ay~~~~~  346 (408)
                      +..++...+.
T Consensus       236 ~~~~~~~~~~  245 (306)
T TIGR02056       236 IDIFQGLIAA  245 (306)
T ss_pred             HHHHHHHHHH
Confidence            7666655433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-31  Score=261.62  Aligned_cols=266  Identities=15%  Similarity=0.101  Sum_probs=197.0

Q ss_pred             HHHHHHHhhhccchHHHHHH---HHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCC--
Q 015392          110 KKLHALYVFTRPFAMIGTIV---GITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--  184 (408)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp--  184 (408)
                      +++++|++++||+.+.++.+   +.+.|.+++....+  ++.   .+++++++..++++++|++||+.|+|+|+.|+|  
T Consensus         5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~   79 (294)
T PRK12873          5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK   79 (294)
T ss_pred             HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence            46889999999988777654   44667666643222  222   256778899999999999999999999998874  


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHHHhh----ChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHH
Q 015392          185 DLPLASGDLSMGTGLAITLTLSLTSLAIALSL----QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG  260 (408)
Q Consensus       185 ~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~l----g~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g  260 (408)
                      +||+++|++|+++|+.+++++.++++.+.+.+    |+.++.+++ +++++...||.      +||++.++++..+...+
T Consensus        80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a  152 (294)
T PRK12873         80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAF-LALPPILIYPS------AKRWFAYPQAILALCWG  152 (294)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHH------HHhccccchHHHHHHHH
Confidence            99999999999999999999999998887665    556666654 46667889995      79999999988777666


Q ss_pred             HHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHH
Q 015392          261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA  340 (408)
Q Consensus       261 ~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~a  340 (408)
                      ..+.+|+.++     .|. ..+....+++.+.+.+|+.+.+++++++|+|+|+++|++|+|+++|++.. .....+..++
T Consensus       153 ~~~l~gw~Av-----~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~-~~~~~~~~~~  225 (294)
T PRK12873        153 FAVLIPWAAA-----EGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL-KTVQICYFLT  225 (294)
T ss_pred             hHHHHHHHHH-----hCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH-HHHHHHHHHH
Confidence            6665665432     232 22222334444566788899999999999999999999999999997544 4455555555


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC--hHhh-HHHHHHHHHHH
Q 015392          341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN--NAST-YSFYMFIWKLF  397 (408)
Q Consensus       341 y~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~--~~~~-~~f~~~iw~l~  397 (408)
                      .+....++.....++   +|.++..+.+..+.+++..+|.++  +++| +.|..+.|-.+
T Consensus       226 ~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G~  282 (294)
T PRK12873        226 SIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILGS  282 (294)
T ss_pred             HHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHHH
Confidence            555555666555543   455666677788889999998876  3666 56666666554

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=3.7e-31  Score=258.18  Aligned_cols=257  Identities=17%  Similarity=0.185  Sum_probs=185.3

Q ss_pred             HHHHhhhccchHHHH---HHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CCCc
Q 015392          113 HALYVFTRPFAMIGT---IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLP  187 (408)
Q Consensus       113 ~~y~~l~Rp~~~~~~---~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RP  187 (408)
                      ++|.|++|++.+...   .++.+.|..+|....+..++.   .+++.+++.+++++++|++|||+|+|+|+.|+  |+||
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   78 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP   78 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence            568888888776554   556677888874311111222   14566778899999999999999999999765  4899


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHH
Q 015392          188 LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF  267 (408)
Q Consensus       188 l~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~  267 (408)
                      +|+|++|+++++.+++++.++++.+++.+|+.+..+++ +++++.+.||.      .||++.++++..+...+....+|+
T Consensus        79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~  151 (281)
T TIGR01474        79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGV-ASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGW  151 (281)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988877765 57778999995      899999999887766666555665


Q ss_pred             HHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 015392          268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV  347 (408)
Q Consensus       268 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~  347 (408)
                      ++.     .| ..  +...+++.....+|+.+.+++++++|+|+|+++|+||+|+++|++++.+... +..++.....+.
T Consensus       152 ~a~-----~g-~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~~~~~  222 (281)
T TIGR01474       152 AAV-----TG-DL--STAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGG-LYALMILLLALA  222 (281)
T ss_pred             HHH-----cC-CC--cHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHH-HHHHHHHHHHHH
Confidence            432     23 22  2233334455567788899999999999999999999999999988755433 333333333333


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHH
Q 015392          348 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM  391 (408)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~  391 (408)
                      +.....+   .++.++..+.+..+.++...+|.+|++.++++|+
T Consensus       223 ~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~  263 (281)
T TIGR01474       223 GLIAGLG---PVYYLGLAAAALLLIRQIATLDIRDPENCLKLFK  263 (281)
T ss_pred             HHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3333333   2444555666777788888888777766665544

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=3.1e-31  Score=257.09  Aligned_cols=266  Identities=20%  Similarity=0.190  Sum_probs=188.9

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCc
Q 015392          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLP  187 (408)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RP  187 (408)
                      ....++.+++++||.+|+.++.++.+|...+... .+..+..   +++++...+..|.+.|++|||+|+|+|++|+|+||
T Consensus         8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~   83 (292)
T PRK13595          8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG   83 (292)
T ss_pred             hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence            4567788999999999999999999999877432 2221132   45666788899999999999999999999999999


Q ss_pred             ccccccCHHHHHHHHHHHHH----HHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHH
Q 015392          188 LASGDLSMGTGLAITLTLSL----TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (408)
Q Consensus       188 l~sG~iS~~~a~~~~~~~~~----l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~  263 (408)
                      +++|++|++++..+...+.+    +++.+++..|++.+.+.+ ++.+++++||  .||+|+|++|++++++.. ..+.  
T Consensus        84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~-v~~~l~~~YS--~pPlRlK~rp~l~~l~~~-~~g~--  157 (292)
T PRK13595         84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLL-LYAALFVGYS--LPPLRFKARPFLDGLSNA-AYAL--  157 (292)
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHc--cCccchhcCcchhHHHHH-HHHH--
Confidence            99999999999886554443    356677788887766654 6789999999  699999999999988763 3333  


Q ss_pred             HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 015392          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (408)
Q Consensus       264 ~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~  343 (408)
                      ++++..    .+.|...   ....  .....+|.++++++++++|+|+||+.|+||+|+++|+|++.+++..++.++.+.
T Consensus       158 p~~~~~----~~~g~~~---~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~  228 (292)
T PRK13595        158 PLALPA----LALGAPV---PWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL  228 (292)
T ss_pred             HHHHHH----HHcCCcc---hHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH
Confidence            222211    1223221   1111  234456678999999999999999999999999999999999987776555433


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHHHHHHHHHHHH
Q 015392          344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYL  402 (408)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~  402 (408)
                      ...   . +.+..  +.   ..+.......+-+ .|.+..++-+.|..|+|-.+...++
T Consensus       229 ~~~---~-~~~~~--~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~  277 (292)
T PRK13595        229 LWP---V-SRLTA--LA---LWLICGGMALALW-RRPTPETAHRLYPLSIVTPWIVGTV  277 (292)
T ss_pred             HHH---h-cchHH--HH---HHHHHHHHHHHHh-cCCCHHHHhccchHHHHHhHHHHHH
Confidence            221   1 11111  11   1222222222322 5766677788999999988766554

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=1.3e-30  Score=254.02  Aligned_cols=265  Identities=14%  Similarity=0.131  Sum_probs=181.5

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CCCcc
Q 015392          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL  188 (408)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl  188 (408)
                      ++++|++++||++.....++++.|.++|.+..  .++.   .+++.+++.+++++++|++|||+|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHG--VSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCC--CCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            46899999999999999999999999985432  2332   24567778899999999999999999999987  69999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHH
Q 015392          189 ASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF  267 (408)
Q Consensus       189 ~sG~iS~~~a~~~~~~~~~l~l~l~~~-lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~  267 (408)
                      |+|++|++++..+++++.++++.+++. +|+.+.....+..+++.+.||.     ++||+++. +..+++..|...++|-
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g  149 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAG  149 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999877 8876544333445678889995     38999985 5566666665555443


Q ss_pred             HHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 015392          268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV  347 (408)
Q Consensus       268 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~  347 (408)
                      +...     .+..  +...+++.+.+.+|..+.....+++|+|+|+++|+||+|+++|++++.+....+..+........
T Consensus       150 ~~a~-----~g~~--~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~  222 (279)
T PRK12869        150 YASG-----TGSL--DLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLL  222 (279)
T ss_pred             HHHH-----hCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHH
Confidence            3321     2222  22334444455556666555567889999999999999999999998876655543333333222


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHccCCChHhh-HHHHHHHHHHH
Q 015392          348 GASSSFQLVKLVSIIGHSTLAF-LLWLRAQTVDLSNNAST-YSFYMFIWKLF  397 (408)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~ila~-~l~~~~~~~d~~~~~~~-~~f~~~iw~l~  397 (408)
                      +. ...+   .++.++..+... .+..+.+.++.++++.+ +.|...+|.+.
T Consensus       223 ~~-~~~g---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~  270 (279)
T PRK12869        223 YL-YYIG---LIGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLA  270 (279)
T ss_pred             HH-hhcc---HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence            22 2223   344444333333 34444455554444433 44544455543

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=2e-30  Score=254.80  Aligned_cols=267  Identities=15%  Similarity=0.100  Sum_probs=185.6

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CC
Q 015392          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD  185 (408)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~  185 (408)
                      .+.++++|++++||++++...+++++|.++|.+.  ..++.   .+++++++.+++++++|++|||+|+|+|++|+  |+
T Consensus         6 ~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~   80 (296)
T PRK04375          6 SRATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKN   80 (296)
T ss_pred             hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCC
Confidence            3467999999999999999999999999998543  23332   24567889999999999999999999999987  69


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHH-HH
Q 015392          186 LPLASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL-VY  263 (408)
Q Consensus       186 RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~-lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~-~~  263 (408)
                      ||+++|++|+++++.+++++.++++.+++. .|+.+..++++..+.+.+.||.     ++||++. ++..+++..+. .+
T Consensus        81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~  154 (296)
T PRK04375         81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPP  154 (296)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHH
Confidence            999999999999999999999999988754 5766665544322335678985     4899996 56666655553 33


Q ss_pred             HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 015392          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (408)
Q Consensus       264 ~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~  343 (408)
                      .+|+++.      .+..  +...+++.+...+|....+..++++|+|||+++|+||+|+++|++++.+.......+....
T Consensus       155 l~g~~a~------~g~~--~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~  226 (296)
T PRK04375        155 LIGWAAV------TGSL--SWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAV  226 (296)
T ss_pred             HHHHHHh------CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHH
Confidence            3554331      2222  2333445556677777888888899999999999999999999998887655444333333


Q ss_pred             HHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHHHHccCCChHhh-HHHHHHHHHH
Q 015392          344 SVIVGASSSFQLVKLVSII-GHSTLAFLLWLRAQTVDLSNNAST-YSFYMFIWKL  396 (408)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~-~~~ila~~l~~~~~~~d~~~~~~~-~~f~~~iw~l  396 (408)
                      .++.......++   .+.+ +..+.+..+.++.+..+.++++.+ +.|+...|.+
T Consensus       227 ~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~  278 (296)
T PRK04375        227 SLLPVLLGMAGL---LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL  278 (296)
T ss_pred             HHHHHHHhccCH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence            332222222232   2333 223334445555666666555544 5555555544

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=1.3e-30  Score=253.83  Aligned_cols=205  Identities=24%  Similarity=0.324  Sum_probs=162.1

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCcccc
Q 015392          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS  190 (408)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~s  190 (408)
                      .+++|++++||+++....++.+.|.+++.+..++  +.   ..++++++.++.++++|++||++|+|+|++|+|+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            3678999999999999999999999888543322  11   134566788889999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHHH
Q 015392          191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  270 (408)
Q Consensus       191 G~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~~  270 (408)
                      |++|+++++.++.++.++|+.+++.+|++++.+++ .+.+++++|+.     ++|+.+.++|+.++...|..+..|....
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a~  150 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFAL-GAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIAV  150 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988877665 46778999995     4799888899998887776555554321


Q ss_pred             HHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHH
Q 015392          271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA  336 (408)
Q Consensus       271 ~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l  336 (408)
                            +. ..+  ..+. ..+..++..++++.||++|+|+|+++|+||+|+++|++++.++....
T Consensus       151 ------~~-~~~--~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~  206 (277)
T PRK12883        151 ------GR-IGL--AGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF  206 (277)
T ss_pred             ------cc-ccH--HHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence                  21 111  1111 12233445678889999999999999999999999999998765444

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.98  E-value=5.8e-30  Score=251.08  Aligned_cols=231  Identities=18%  Similarity=0.184  Sum_probs=180.6

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccc--CCCCCC
Q 015392          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDK--VNKPDL  186 (408)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~--e~D~--inkp~R  186 (408)
                      .+++|++++||+++..+++++++|.++|... ..+++.   ..++++++.+++++++|.+|||+|+  ++|+  .++|+|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence            3678999999999999999999999998432 345543   2567788999999999999999999  4675  456899


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHh----hChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392          187 PLASGDLSMGTGLAITLTLSLTSLAIALS----LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (408)
Q Consensus       187 Pl~sG~iS~~~a~~~~~~~~~l~l~l~~~----lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~  262 (408)
                      |+++|++|+++++.++..+.+++++++..    .+++.+.+++ ++++++++||  .||.|+|++++ ||+.++..+|..
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Ys--~~p~~~~~~gl-ge~~~~~~~G~~  153 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGL-LCIAAAILYT--GGPKPYGYTGL-GELFVGVFFGLV  153 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhhhhc--CCCCccCCCCc-HHHHHHHHHHHH
Confidence            99999999999998888777766555443    4665555543 5788899999  58888888874 898888777776


Q ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHH
Q 015392          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (408)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~  342 (408)
                      ...|.+..     ..+.  .+...++..++..+++.++++.||++|+|+|++.|+||+|+++|++++.+++..+..++|+
T Consensus       154 ~~~~~~~~-----~~~~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~  226 (293)
T PRK06080        154 IVLGTYYL-----QAGT--VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYL  226 (293)
T ss_pred             HHHHHHHH-----hcCC--CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence            66554332     1121  2334555666777888889999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhhhhhhH
Q 015392          343 VSVIVGASSSFQLV  356 (408)
Q Consensus       343 ~~~~~~~~~~~~~~  356 (408)
                      ..+...+....++.
T Consensus       227 ~~~~~~~~~~~~~~  240 (293)
T PRK06080        227 CIVLLALLGLASPW  240 (293)
T ss_pred             HHHHHHHHhhhhHH
Confidence            77766655545554

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.98  E-value=6e-30  Score=253.27  Aligned_cols=238  Identities=12%  Similarity=0.092  Sum_probs=183.8

Q ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC----CCCc
Q 015392          112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK----PDLP  187 (408)
Q Consensus       112 l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink----p~RP  187 (408)
                      ++.|++++||++...+++++++|.++|.....++++..   .++++++++++++++|.+|||+|.+.|..++    +.|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            67899999999999999999999999964444566642   5677788899999999999999998766654    6899


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHH----HHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHH
Q 015392          188 LASGDLSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (408)
Q Consensus       188 l~sG~iS~~~a~~~~~~~~~l~l~----l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~  263 (408)
                      +++|.+|+|++...++.+.+++++    +.+..|+..+.+++ ++++.++.||  .||+++||++ +|++.++..+|+.+
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl-~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~  155 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGL-ICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGI  155 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHH
Confidence            999999999999988877776666    55667876666654 6999999999  5899999999 68999888888877


Q ss_pred             HHHHHHHHHHHhhcCc--------cc--chH----HHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhH
Q 015392          264 QFSFFIHFQKYVLGRP--------VV--ITR----PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENV  329 (408)
Q Consensus       264 ~~G~~~~~~~~v~g~~--------~~--~~~----~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a  329 (408)
                      ..|.+.. ++...+..        ..  ++.    ..++..+.+++....+++.||++|+|+|+++|+||+|+++|+|++
T Consensus       156 v~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a  234 (317)
T PRK13387        156 FLLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKG  234 (317)
T ss_pred             HHHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhH
Confidence            6665443 21100000        00  000    011244555666777899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 015392          330 LRLCVYALFFAYGVSVIVGASSSFQLVK  357 (408)
Q Consensus       330 ~~l~~~ll~~ay~~~~~~~~~~~~~~~~  357 (408)
                      .++...++.++|+..+........++..
T Consensus       235 ~~l~~~l~~~a~l~~~~~v~~g~lp~~~  262 (317)
T PRK13387        235 VVLFAILFYASYLAIAVIVLMGYISPWA  262 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            9999999999998776665554455543

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.97  E-value=2.2e-29  Score=245.57  Aligned_cols=264  Identities=17%  Similarity=0.125  Sum_probs=179.3

Q ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CCCcccc
Q 015392          113 HALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLAS  190 (408)
Q Consensus       113 ~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl~s  190 (408)
                      |+|++++||+++....++++.|.++|.+.. +.++.   .+++++++.+++++++|++|||+|+|+|++|+  |+||+++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            469999999999999999999999985432 23432   24667789999999999999999999999976  6999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHH-HHhhChhHHHHHHHHHHH-HheeccCCcccccccCCCccchHHHHHHHHHHHHHHHH
Q 015392          191 GDLSMGTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFL-LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  268 (408)
Q Consensus       191 G~iS~~~a~~~~~~~~~l~l~l-~~~lg~~~l~~~l~~~~~-l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~  268 (408)
                      |++|++++..+++++.++|+.+ .+.+|+....+++ ++.+ .+++||..     +||++..++ .+++..|...+++.+
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~~~~~~~~~Yt~~-----lKr~~~~~~-~v~~~~g~~~~l~g~  149 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGL-FGIFFYVIVYTIW-----LKRRTPQNT-VIGGFAGAVPPLIGW  149 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhcChh-----hccCCchhH-HHHHHHHHHHHHHHH
Confidence            9999999999999999999884 4558877666654 3444 48899942     799988744 455555554443322


Q ss_pred             HHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 015392          269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  348 (408)
Q Consensus       269 ~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~  348 (408)
                      ..     .++...  ...+++.+.+.+|........+++|+|+|+++|+||+|+++|++++.+..............+.+
T Consensus       150 ~a-----~~g~~~--~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (280)
T TIGR01473       150 AA-----VTGSIS--LGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA  222 (280)
T ss_pred             HH-----hcCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21     122222  22333444555566665556678999999999999999999999887765544433333333333


Q ss_pred             HhhhhhhHHHHHH-HHHHHHHHHHHHHHHHccCC-ChH-hhHHHHHHHHHHH
Q 015392          349 ASSSFQLVKLVSI-IGHSTLAFLLWLRAQTVDLS-NNA-STYSFYMFIWKLF  397 (408)
Q Consensus       349 ~~~~~~~~~~~~~-~~~~ila~~l~~~~~~~d~~-~~~-~~~~f~~~iw~l~  397 (408)
                      .....++   .|. .+..+.+..+.++.+..+.+ |++ +.+.|+...+.+.
T Consensus       223 ~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~  271 (280)
T TIGR01473       223 FLGGTGW---LYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLA  271 (280)
T ss_pred             HHhcccH---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            3323333   333 33344445556666666655 444 3345554444443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.97  E-value=6.1e-29  Score=244.85  Aligned_cols=209  Identities=14%  Similarity=0.153  Sum_probs=161.2

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CC
Q 015392          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD  185 (408)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~  185 (408)
                      .+.++++|++++||+.+....++++.|.++|...  +.++..   ++.++++..+.++++|++|||+|+|+|+.++  ++
T Consensus         9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~   83 (306)
T PRK13362          9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN   83 (306)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence            4567899999999999999999999999998432  234321   4556678999999999999999999999765  48


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHH-HhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHH
Q 015392          186 LPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ  264 (408)
Q Consensus       186 RPl~sG~iS~~~a~~~~~~~~~l~l~l~-~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~  264 (408)
                      ||+++|++|+++++.+++++.++|+.++ ++.|+....++.+..+++.++||.     ++||++..+++..+...+..+.
T Consensus        84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l  158 (306)
T PRK13362         84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPV  158 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHH
Confidence            9999999999999999999999998865 456776665544334446779984     3899999988866555455554


Q ss_pred             HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHH
Q 015392          265 FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCV  334 (408)
Q Consensus       265 ~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~  334 (408)
                      +|+.+.      ++..  +...+++..++.+|+...+...+++|.|||+++|+||+|+++|++++.+...
T Consensus       159 ~G~~a~------~g~~--~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~  220 (306)
T PRK13362        159 VGYCAV------TGQF--DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIV  220 (306)
T ss_pred             HHHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHH
Confidence            665432      2222  2234455666777788888888999999999999999999999998876433

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=8.3e-28  Score=236.25  Aligned_cols=234  Identities=17%  Similarity=0.128  Sum_probs=182.8

Q ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccCCCCCC
Q 015392          109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDL  186 (408)
Q Consensus       109 ~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~inkp~R  186 (408)
                      .++++.|++.+||+++..+++++++|.++|.....++++..   .++++++.+++|+++|.+|||+|.+  .|+. ++. 
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-   83 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-   83 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence            46688899999999999999999999999965444677653   5678889999999999999999987  6774 222 


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHH----HHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392          187 PLASGDLSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (408)
Q Consensus       187 Pl~sG~iS~~~a~~~~~~~~~l~l~l----~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~  262 (408)
                      ...++..+++++...++.+.++++.+    .+..|++.+.++ +++++++++||  .||+++|++++ |++.++..+|+.
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l  159 (304)
T PRK07419         84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPL  159 (304)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHHH
Confidence            34455557888888777766665544    445576555555 46899999999  59999999995 899999888888


Q ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHH
Q 015392          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (408)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~  342 (408)
                      ...|.+.+ +    .+  .++...+...+.+++.+.++.+.||++|+|+|++.|+||+|+++|++++.+++..+...+|+
T Consensus       160 ~v~g~~yv-~----t~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~  232 (304)
T PRK07419        160 AVAAALYS-Q----TP--SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYA  232 (304)
T ss_pred             HHHHHHHH-h----cC--CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHH
Confidence            77776553 2    22  23334455566677778888999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhhhhhhHHH
Q 015392          343 VSVIVGASSSFQLVKL  358 (408)
Q Consensus       343 ~~~~~~~~~~~~~~~~  358 (408)
                      ..+........+++.+
T Consensus       233 ~~i~~v~~g~~p~~~L  248 (304)
T PRK07419        233 LELLPVLLGFWPWTTL  248 (304)
T ss_pred             HHHHHHHHhhhHHHHH
Confidence            8776666555565543

>PLN02922 prenyltransferase

Probab=99.97  E-value=2.3e-27  Score=234.29  Aligned_cols=238  Identities=18%  Similarity=0.208  Sum_probs=179.3

Q ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccCCCCCC
Q 015392          109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDL  186 (408)
Q Consensus       109 ~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~inkp~R  186 (408)
                      .++++.|++.+||+++..+++++++|.++|......+++..   .++++++++++++++|.+|||+|.+  .|+.++..+
T Consensus        12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~   88 (315)
T PLN02922         12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESV   88 (315)
T ss_pred             ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCC
Confidence            35688899999999999999999999999965434677653   5678899999999999999999986  576543222


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHH---h--hChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHH
Q 015392          187 PLASGDLSMGTGLAITLTLSLTSLAIAL---S--LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL  261 (408)
Q Consensus       187 Pl~sG~iS~~~a~~~~~~~~~l~l~l~~---~--lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~  261 (408)
                      ....|  |++++...++.+.++++...+   .  .+++.+.++ +++++.+++||  .||+++|++++ |++.++..+|.
T Consensus        89 ~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~  162 (315)
T PLN02922         89 VNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGP  162 (315)
T ss_pred             CCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHh--cCCcccccCcc-hHHHHHHHHHH
Confidence            22344  899998887776666553222   1  244445444 47999999999  59999999996 79888888888


Q ss_pred             HHHHHHHHHHHHHhhcC-cc---cchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHH
Q 015392          262 VYQFSFFIHFQKYVLGR-PV---VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYAL  337 (408)
Q Consensus       262 ~~~~G~~~~~~~~v~g~-~~---~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll  337 (408)
                      .+..|.|.. ++...+. ..   ..+...+...+.+++++.++.+.||++|+|+|++.|+||+|+++|++++.++...+.
T Consensus       163 l~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~  241 (315)
T PLN02922        163 LATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAV  241 (315)
T ss_pred             HHHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHH
Confidence            777776553 2211111 00   123345566777788888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhH
Q 015392          338 FFAYGVSVIVGASSSFQLV  356 (408)
Q Consensus       338 ~~ay~~~~~~~~~~~~~~~  356 (408)
                      ..+|+..+........+++
T Consensus       242 ~~~y~~~i~~v~~~~~p~~  260 (315)
T PLN02922        242 LLLYSLLAALGLLKALPLP  260 (315)
T ss_pred             HHHHHHHHHHHHHhhhhHH
Confidence            9999887766655545543

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.96  E-value=1.2e-27  Score=233.47  Aligned_cols=225  Identities=15%  Similarity=0.062  Sum_probs=174.0

Q ss_pred             ccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccCC--CCCCcccccccCH
Q 015392          120 RPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVN--KPDLPLASGDLSM  195 (408)
Q Consensus       120 Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~in--kp~RPl~sG~iS~  195 (408)
                      ||+++..+++++++|.++|.... .+++..   .++++++++++|+++|.+|||+|.+  .|+.+  +|.|++++|.+++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            89999999999999999996543 677643   5677889999999999999999985  36543  4789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH----HhhCh-----hHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHH
Q 015392          196 GTGLAITLTLSLTSLAIA----LSLQS-----PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS  266 (408)
Q Consensus       196 ~~a~~~~~~~~~l~l~l~----~~lg~-----~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G  266 (408)
                      +++...++++++++++++    +..++     +.+++..+++++.+++||  .||+++|++++ |++.++..+|....+|
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~g  153 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVLG  153 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHHH
Confidence            999988887776555443    44454     133222346888999999  58999999995 8999998889887777


Q ss_pred             HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 015392          267 FFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI  346 (408)
Q Consensus       267 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~  346 (408)
                      .+.+ +    .+..  +...++..+..++++.++++.||++|+|+|+++|+||+|+++|+|+++++...++..+|+..++
T Consensus       154 ~~yv-q----~~~~--~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~  226 (284)
T TIGR00751       154 TQYL-Q----AHRV--DWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFV  226 (284)
T ss_pred             HHHH-h----cCCC--CHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHH
Confidence            5543 2    2222  2333444556677778889999999999999999999999999999999999998899887666


Q ss_pred             HHHhhhhhhHHH
Q 015392          347 VGASSSFQLVKL  358 (408)
Q Consensus       347 ~~~~~~~~~~~~  358 (408)
                      .......+++.+
T Consensus       227 ~~~~~~~p~~~l  238 (284)
T TIGR00751       227 FMLATPISWWCV  238 (284)
T ss_pred             HHHHhhchHHHH
Confidence            555444555433

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1.9e-27  Score=233.36  Aligned_cols=271  Identities=15%  Similarity=0.151  Sum_probs=172.1

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCC-------
Q 015392          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN-------  182 (408)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in-------  182 (408)
                      +++++|++++||++++....+++.|.++|......+++..   +++..+++.++..++|++|||.|+|+|++|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            4688999999999998877877788888732112234421   232334444555777999999999999875       


Q ss_pred             --C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhCh----hHHHHHHHHHHHHheeccCCcccccccCC---Cccc
Q 015392          183 --K--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQS----PPLIFGLIVWFLLGTAYSVDLPFLRWKTK---PFLA  251 (408)
Q Consensus       183 --k--p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~----~~l~~~l~~~~~l~~~Ys~~~PplrlKr~---~~~~  251 (408)
                        |  ++||+++|++|+++++.+.+++.++|+.++..++.    ..+.++ +.+.++++.|+.      -||.   | .+
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~kr~~~~p-~~  151 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV------KKRNQKYP-VA  151 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------cccccccc-HH
Confidence              3  48999999999999999999999999888776553    222222 356677888884      2332   3 11


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHH
Q 015392          252 GMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR  331 (408)
Q Consensus       252 ~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~  331 (408)
                      .+.-+...+..+..| +.     ..|. .  +...+...++..+|+.+++.+||++|+|||++.|+||+|+++|++++.+
T Consensus       152 ~l~G~~~~~~~~~~g-~~-----~~g~-~--~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~  222 (297)
T PRK12871        152 QLLGRTDFTLFPAAG-YL-----CYGQ-P--DMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMY  222 (297)
T ss_pred             HHHHHHHHHHHHHHH-HH-----HhCC-C--cHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHH
Confidence            211111222222233 22     1232 1  2233444566677889999999999999999999999999999998876


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHH--HHHHHHHHHHHh
Q 015392          332 LCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF--IWKLFYAEYLLI  404 (408)
Q Consensus       332 l~~~ll~~ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~--iw~l~~~~y~~~  404 (408)
                      ....+..+.....+  +.....++  ..+....++.+..+.++.+..+.+++++|-+-|..  ....+|..-+++
T Consensus       223 ~i~~~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  293 (297)
T PRK12871        223 WVTGFTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILPLYHASLVIYAVSIIL  293 (297)
T ss_pred             HHHHHHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54444333332222  22223332  11222234555567788888888888887544432  444444444443

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.96  E-value=2.4e-26  Score=224.36  Aligned_cols=229  Identities=14%  Similarity=0.121  Sum_probs=174.1

Q ss_pred             HHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--ccCCCCCCcccccc
Q 015392          115 LYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEI--DKVNKPDLPLASGD  192 (408)
Q Consensus       115 y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~--D~inkp~RPl~sG~  192 (408)
                      |++.+||+++..+++++++|.++|......+++..   .+++++++++.|+++|.+|||+|.+.  |+.+.  ....++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCccccc
Confidence            67899999999999999999999965444677653   56778899999999999999999864  77432  1222333


Q ss_pred             cCHHHHHHHHHHHHHHHHHH----HHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHH
Q 015392          193 LSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  268 (408)
Q Consensus       193 iS~~~a~~~~~~~~~l~l~l----~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~  268 (408)
                      .+++++....+++..+++.+    .+..+++.+.++ +++++.++.||  .||+++|++++ |++.++..+|...+.|.+
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg-~~g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~  152 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALV-GLCCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAAL  152 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHH
Confidence            45778777766666555443    444564444444 46999999999  59999999996 899999999988777655


Q ss_pred             HHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 015392          269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  348 (408)
Q Consensus       269 ~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~  348 (408)
                      .+ +    .+  .++...+...+.+++.+.++.+.||++|+|+|++.|+||+|+++|+|++.++...++..+|+..+...
T Consensus       153 yv-q----t~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v  225 (285)
T TIGR02235       153 YA-Q----SQ--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAV  225 (285)
T ss_pred             HH-h----CC--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHH
Confidence            43 2    22  22334455566777788889999999999999999999999999999999999999999998876666


Q ss_pred             HhhhhhhHHHH
Q 015392          349 ASSSFQLVKLV  359 (408)
Q Consensus       349 ~~~~~~~~~~~  359 (408)
                      .....+|..++
T Consensus       226 ~~~~~p~~~ll  236 (285)
T TIGR02235       226 IGGFLPWTTLL  236 (285)
T ss_pred             HHhhhHHHHHH
Confidence            55555554443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=9.2e-27  Score=226.38  Aligned_cols=217  Identities=21%  Similarity=0.184  Sum_probs=154.6

Q ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCccccc
Q 015392          112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASG  191 (408)
Q Consensus       112 l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG  191 (408)
                      +|.+++++||.+|+.+.+++..|+++|.+ .+  ++.+   ++.++......+.+.|++|||+|+|.|+.|++.+.. .|
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~-~~--~~~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g   73 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLAGG-EI--DWLF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG   73 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHHCC-CC--ChHH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence            36789999999999999999889999932 22  2321   222222344555555677999999999999765443 58


Q ss_pred             ccCHHHHHHHHHHHHH-----HHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHH
Q 015392          192 DLSMGTGLAITLTLSL-----TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS  266 (408)
Q Consensus       192 ~iS~~~a~~~~~~~~~-----l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G  266 (408)
                      .++++++......+.+     .++.+....+++.+.++ .++++.++.||  .||.|+|++++.++++.+..+.....+|
T Consensus        74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~G  150 (282)
T PRK13105         74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALYG  150 (282)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHHH
Confidence            8999988444333332     33333343365555544 46889999999  5899999999988865544443223344


Q ss_pred             HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 015392          267 FFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI  346 (408)
Q Consensus       267 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~  346 (408)
                      .+.     + ++.  .+...++....+.+++.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.++++..+.
T Consensus       151 ~~~-----~-~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~  222 (282)
T PRK13105        151 LVL-----A-GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA  222 (282)
T ss_pred             HHH-----h-hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            332     2 332  22334555667778899999999999999999999999999999999999999998888876653

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.95  E-value=6.9e-26  Score=218.83  Aligned_cols=277  Identities=18%  Similarity=0.185  Sum_probs=194.1

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccC----CC
Q 015392          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKV----NK  183 (408)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~i----nk  183 (408)
                      ++.+.|++++|||+++.++.+++.|.++|......+++.   ..++++++++++++.+|..|||.|.+  .|..    .+
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence            456899999999999999999999999997544345543   36788999999999999999999986  5643    22


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHH----HHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHH
Q 015392          184 PDLPLASGDLSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF  259 (408)
Q Consensus       184 p~RPl~sG~iS~~~a~~~~~~~~~l~l~l----~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~  259 (408)
                      .++-+...+++++..+.+.+.+...+.++    ....+++.+.++ +++++.++.|+.  +|+++++.|+ |++.++.++
T Consensus        83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vff  158 (303)
T COG1575          83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFF  158 (303)
T ss_pred             ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeecc--CCcCcccCCH-HHHHHHHHH
Confidence            34555556666777766666555444333    344566644444 579999999995  7999999885 899888888


Q ss_pred             HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHH
Q 015392          260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  339 (408)
Q Consensus       260 g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~  339 (408)
                      |.....|.+.. |    .+  ..+...+...+...+.+.++...|+++|+|+|+++|++|+|+++|+++++.+...++..
T Consensus       159 G~l~v~g~~yi-q----t~--~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~  231 (303)
T COG1575         159 GPLIVLGAYYI-Q----TG--RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV  231 (303)
T ss_pred             HHHHHHHHHHH-h----cc--cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence            88776665442 2    12  22333555566677777788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccC--CCh---Hh--hHHHHHHHHHHHHHHHHHh
Q 015392          340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDL--SNN---AS--TYSFYMFIWKLFYAEYLLI  404 (408)
Q Consensus       340 ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~--~~~---~~--~~~f~~~iw~l~~~~y~~~  404 (408)
                      +|+..++.......+++.++..+. ..+   ..+..+.+..  ..+   ..  .....+.+|.+.++--+++
T Consensus       232 a~l~~~~~~i~~~~~~~~ll~ll~-~Pl---~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~i~~  299 (303)
T COG1575         232 AYLAIVIFVILGLFPVWGLLFLLA-LPL---AIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVGILL  299 (303)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHH-HHH---HHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998876655555555544332222 222   2223333311  111   12  2345556888888765554

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=5.9e-26  Score=221.71  Aligned_cols=230  Identities=21%  Similarity=0.220  Sum_probs=160.2

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCccc
Q 015392          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA  189 (408)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~  189 (408)
                      +.+++++++.|+.+...+..++..+...... . +...     .....++.++.+.++|++||+.|+|+|++|+|+||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~-~-~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLL-L-GLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHHH-H-cChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            4578999999999988777666554322110 1 1111     2355668899999999999999999999999999998


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHH-HhhChhHHHHHHHHHHHHheeccCCcccc-cccCCCccchHHHHHHHHHHHHHHH
Q 015392          190 SGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFL-RWKTKPFLAGMCMVTVFGLVYQFSF  267 (408)
Q Consensus       190 sG~iS~~~a~~~~~~~~~l~l~l~-~~lg~~~l~~~l~~~~~l~~~Ys~~~Ppl-rlKr~~~~~~l~i~~~~g~~~~~G~  267 (408)
                      +++...+.+..+..+...+++.+. ...|++.+.+++ ++.++++.||.  ||. |+||.|.++|++++..+|..+.++.
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~  151 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFI-IPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG  151 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence            554444444334444444444432 234776666554 57778999995  555 5899999999999998887665433


Q ss_pred             HHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 015392          268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV  347 (408)
Q Consensus       268 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~  347 (408)
                      +..     .+..  ++...+...++++++.+++++++|++|+|+|+++|+||+|+++|+|++.++...+..++++..+..
T Consensus       152 ~~~-----~~~~--~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~  224 (285)
T PRK12872        152 VYY-----YQLT--IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILG  224 (285)
T ss_pred             HHh-----cccc--cchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            221     1111  222334444555566778889999999999999999999999999999999888888887776655


Q ss_pred             HHhhhhhhH
Q 015392          348 GASSSFQLV  356 (408)
Q Consensus       348 ~~~~~~~~~  356 (408)
                      ......++.
T Consensus       225 ~~~~~~~~~  233 (285)
T PRK12872        225 VYTGLLPLL  233 (285)
T ss_pred             HHHhHhhHH
Confidence            444334443

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.95  E-value=2.7e-26  Score=219.15  Aligned_cols=188  Identities=29%  Similarity=0.407  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccC--CCCCCcccccccCHHHHHHHHHH
Q 015392          127 TIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLT  204 (408)
Q Consensus       127 ~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~i--nkp~RPl~sG~iS~~~a~~~~~~  204 (408)
                      +..+++.|.+.+...  ..++.   ....+.++.++.+.++|.+||+.|+|+|++  |+|+||+++|+++++++..++++
T Consensus         4 ~~~~~l~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~   78 (257)
T PF01040_consen    4 SFLPVLAGLALASGG--PFNWP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI   78 (257)
T ss_pred             HHHHHHHHHHHHHcC--CCCHH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence            445566664444332  23332   245566677799999999999999999999  88999999999999999999999


Q ss_pred             HHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHhhcCcccchH
Q 015392          205 LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR  284 (408)
Q Consensus       205 ~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~  284 (408)
                      +.++++++++..++..+.+.+ ++.+.+++||   ||+|+||++++++++++..++..+..|++.      .++..  +.
T Consensus        79 ~~~l~l~l~~~~~~~~~~~~~-~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~  146 (257)
T PF01040_consen   79 LLLLGLLLALLLGPWFLLILL-LGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGDP--PP  146 (257)
T ss_pred             HHHHHHHHHHhcCchhHHHHH-HHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCcc--cH
Confidence            999999999888987777664 5667779999   788999999999999888777665555543      12221  22


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHH
Q 015392          285 PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR  331 (408)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~  331 (408)
                      +.+....+..++.......+|++|+|+|++.|+||+|+++|+++++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            33333444455666777788999999999999999999999999986

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.94  E-value=4.3e-27  Score=220.36  Aligned_cols=278  Identities=17%  Similarity=0.114  Sum_probs=200.1

Q ss_pred             hhhHHHHHHHHHHHhhhccchHHHHHHHH---HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 015392          103 SFWDVLLKKLHALYVFTRPFAMIGTIVGI---TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEID  179 (408)
Q Consensus       103 ~~~~~~~~~l~~y~~l~Rp~~~~~~~l~~---l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D  179 (408)
                      ++.+..+.+++.|.|++|.+..+++.+..   ....++|...  ...+. +.-+.++-++++++++++|++||+.|+|+|
T Consensus        55 s~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda--g~~p~-~~mL~LFG~GAllMRgAGCtINDlwDkdlD  131 (353)
T KOG1381|consen   55 SLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA--GLLPS-IKMLALFGVGALLMRGAGCTINDLWDKDLD  131 (353)
T ss_pred             hhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC--Cccch-hHHHHHhcccHHHhccCCceehhhhhhhhh
Confidence            33344456699999999999999986643   4455555422  11111 111334556899999999999999999999


Q ss_pred             cCCCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHH
Q 015392          180 KVNKP--DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVT  257 (408)
Q Consensus       180 ~inkp--~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~  257 (408)
                      +..++  .||+++|++|+++|+.+..+.+.+++.+...+|+....++. .++.+.+.|+.      +||.+++.+++.+.
T Consensus       132 ~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~-~sl~~v~~ypl------~kr~TY~pq~vLgl  204 (353)
T KOG1381|consen  132 AKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGA-SSLALVITYPL------MKRFTYWPQLVLGL  204 (353)
T ss_pred             hhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcc-cccccEEEeeh------hhhcchhHHHHHhh
Confidence            97764  89999999999999999999999999999999998887764 68888999996      89999999887654


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHH
Q 015392          258 VFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYAL  337 (408)
Q Consensus       258 ~~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll  337 (408)
                      .+.....+|+-      ..++.. ++...+-+.+.-..|++.+++++++||.++|.+.|+|+.+.++|++...|++..- 
T Consensus       205 tfnwGAllGw~------A~~g~~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~-  276 (353)
T KOG1381|consen  205 TFNWGALLGWC------ALKGSL-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFG-  276 (353)
T ss_pred             hcchhhhhcch------hhcCcc-ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhh-
Confidence            44333333322      122222 1211222333344678889999999999999999999999999999888876432 


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhH-HHHHHHHHHHHHHH
Q 015392          338 FFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFYMFIWKLFYAEY  401 (408)
Q Consensus       338 ~~ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~-~f~~~iw~l~~~~y  401 (408)
                      .........+|..+...|   .+..++...+..+.++...+|++|+.+|. .|..++|-.++.-+
T Consensus       277 a~~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli~~~  338 (353)
T KOG1381|consen  277 AAQIASLAAAGIASDQTW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLILFS  338 (353)
T ss_pred             HHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHHhcCcchHHHHH
Confidence            222233345566666555   34445677788899999999999988875 55556776665544

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=1.6e-24  Score=210.98  Aligned_cols=220  Identities=22%  Similarity=0.236  Sum_probs=140.9

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCC
Q 015392          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL  186 (408)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~R  186 (408)
                      ..+.++.|+++.||+++..++.++++|.++|....++ +++..+  .+++. ..+..+.+.|++||++|+|+||.|++++
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~--~ll~~-~~i~~Nl~~y~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAV--ALFAY-FLFPANVFLYGVNDVFDADTDELNPKKD   80 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHH--HHHHH-HHHHHHHHHhcchhhhhhhccccCCCcc
Confidence            4568889999999999999999999999999654322 333211  11111 1133456667799999999999998754


Q ss_pred             c---ccccccCHHHHHH-HHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392          187 P---LASGDLSMGTGLA-ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (408)
Q Consensus       187 P---l~sG~iS~~~a~~-~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~  262 (408)
                      .   ++   .+.+.+.. ..++...+++.+....++....+ ++..+++++.||  .||+|+|++++.+..+.+ .+...
T Consensus        81 ~~r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS--~pP~rlk~~p~~~~~~~g-~~~~~  153 (282)
T PRK12875         81 REREVR---YRGDRRVLVAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYS--APPLRFKTTPVLDSLSNG-LYILP  153 (282)
T ss_pred             CCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHc--CCCccchhccHHHHHHHH-HHHHH
Confidence            3   33   11122222 22223344444444444433332 245788999999  599999999986544322 22222


Q ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHH
Q 015392          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (408)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~  342 (408)
                      ...+++..      .+.  .+...+  .+..++++.+++++||++|+|+|+++|+||+|+++|++++.+++...+.++.+
T Consensus       154 ~~~~y~~~------tg~--~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~  223 (282)
T PRK12875        154 GVAAYALV------SGS--LPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAA  223 (282)
T ss_pred             HHHHHHHH------cCC--CcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHH
Confidence            22233221      222  222222  22335778889999999999999999999999999999999887777666655


Q ss_pred             HHHHH
Q 015392          343 VSVIV  347 (408)
Q Consensus       343 ~~~~~  347 (408)
                      .....
T Consensus       224 ~~~~~  228 (282)
T PRK12875        224 AFAAV  228 (282)
T ss_pred             HHHHH
Confidence            54443

>PLN02776 prenyltransferase

Probab=99.93  E-value=5.7e-24  Score=210.76  Aligned_cols=195  Identities=15%  Similarity=0.065  Sum_probs=144.0

Q ss_pred             hhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CCCcccccccCH
Q 015392          118 FTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLSM  195 (408)
Q Consensus       118 l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl~sG~iS~  195 (408)
                      ++||+.....+++.+.|+++|.+...  ++.   .+++++++.+++++++|++||++|+|+|++|+  ++||+|+|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            46888888889999999999864332  222   24667789999999999999999999999876  499999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHH-HHHHHHHHH
Q 015392          196 GTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ-FSFFIHFQK  273 (408)
Q Consensus       196 ~~a~~~~~~~~~l~l~l-~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~-~G~~~~~~~  273 (408)
                      ++|+.+++++.++|+.+ ++++|+.+..++++..+++...||.      +||++.+ +..++++.|...+ +|+.++   
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~Av---  145 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAAA---  145 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHHH---
Confidence            99999999999988854 5678988877765434445678995      8999987 5678877774444 555432   


Q ss_pred             HhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecc--hhhHHHH
Q 015392          274 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLG--KENVLRL  332 (408)
Q Consensus       274 ~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG--~~~a~~l  332 (408)
                         ++...+  ..+++.+.+.+|.........+.|.|||+++|++++|+.-+  ++.+..+
T Consensus       146 ---tg~~~~--~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i  201 (341)
T PLN02776        146 ---SGQLDA--GAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVA  201 (341)
T ss_pred             ---cCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHH
Confidence               222222  23344455556665444555677888999999999999763  4444443

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=6.9e-25  Score=211.41  Aligned_cols=261  Identities=17%  Similarity=0.212  Sum_probs=184.2

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCC--C
Q 015392          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--D  185 (408)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp--~  185 (408)
                      ...++++|+++++|+......++...|+++|...  ..++.   .++.++++..+..++++++|++.|+|+|++++|  +
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            5688999999999999999999999999999752  23433   257788899999999999999999999999885  9


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHH-HhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHH
Q 015392          186 LPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ  264 (408)
Q Consensus       186 RPl~sG~iS~~~a~~~~~~~~~l~l~l~-~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~  264 (408)
                      ||+++|++++++++.++.++.++|+.+. +..|+.+..++++..++.+.+||.+     +||++.. |+.+++..|..++
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~-NiviGg~aGa~Pp  162 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQ-NIVIGGFAGAMPP  162 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCccc-ceeeeeccccccc
Confidence            9999999999999999999999999887 7789888877777788899999985     8999986 6677777776655


Q ss_pred             -HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHH-H
Q 015392          265 -FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY-G  342 (408)
Q Consensus       265 -~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay-~  342 (408)
                       +|+.++     .| ....+..+++.++|+|.......+  ++.-.||-+++|+..+|++-|++.+.+. +..+.+.. .
T Consensus       163 liGwaAv-----tg-~~~~~a~~Lf~IiF~WtPpHfwAL--Al~~~~DY~~AgiPMlPvv~G~~~t~~~-I~~y~~~l~~  233 (304)
T COG0109         163 LIGWAAV-----TG-SISLGAILLFAIIFLWTPPHFWAL--ALKYKDDYKAAGIPMLPVVKGERRTKRQ-ILLYTLALAP  233 (304)
T ss_pred             cceeeee-----eC-CCCchHHHHHHHHHHhccHHHHHH--HHHHHHHHHHcCCCcccccccHHHHHHH-HHHHHHHHHH
Confidence             565432     22 233344445556666543222222  1223445599999999999999998764 33333222 2


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccC--CChHhhHHHHH
Q 015392          343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDL--SNNASTYSFYM  391 (408)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~--~~~~~~~~f~~  391 (408)
                      +.++...   .+..+..|.+...+++..+.+...+.-.  +++.+.+-|..
T Consensus       234 ~sl~~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~  281 (304)
T COG0109         234 VSLLLAL---LGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARKLFKY  281 (304)
T ss_pred             HHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            2222222   2223345555556666666666555522  23344444433

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.93  E-value=6e-24  Score=207.20  Aligned_cols=180  Identities=19%  Similarity=0.138  Sum_probs=134.2

Q ss_pred             HHHHHHHHHhhhhhccccccccCCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCC
Q 015392          159 SAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVD  238 (408)
Q Consensus       159 ~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~  238 (408)
                      .+.+...++|++||++|+|+|++|+|+||.+    +++.+..++++..++|+.+++..|++.  ++ +++.+.+++||.+
T Consensus        66 ~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS~G  138 (307)
T PRK13591         66 AGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYSKG  138 (307)
T ss_pred             HHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhcCC
Confidence            5567788999999999999999999999987    788999999999999999999888643  33 4678889999963


Q ss_pred             --ccc--ccccCCCccchHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhh
Q 015392          239 --LPF--LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ  314 (408)
Q Consensus       239 --~Pp--lrlKr~~~~~~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~  314 (408)
                        .+|  +|+|+.+.+||+.++..+|.....+.    +.  ....  + .+.....++.....++++++||++|+|||++
T Consensus       139 lk~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~--~~~~--~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~  209 (307)
T PRK13591        139 IKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GS--YCGS--L-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTL  209 (307)
T ss_pred             CCCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hh--hhhh--H-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence              224  48899999999999988876432211    00  0000  0 0111111111112356778999999999999


Q ss_pred             cCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015392          315 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQ  354 (408)
Q Consensus       315 ~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~~~~~~~  354 (408)
                      .|+||+|+++|++++.++...+..+++++.++.....-.+
T Consensus       210 ~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~  249 (307)
T PRK13591        210 AGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIA  249 (307)
T ss_pred             cCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999888888887766555543333

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.93  E-value=9.3e-24  Score=204.25  Aligned_cols=178  Identities=13%  Similarity=0.147  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHH
Q 015392          152 EFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLL  231 (408)
Q Consensus       152 ~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l  231 (408)
                      +.+++.+.+++..+++|++|||+|+|+||+|+|+||+|||++|++++..++.++.++++.++...     ...+ ...++
T Consensus        47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i-~~~~i  120 (299)
T PRK13592         47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNV-GWFLF  120 (299)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHH
Confidence            45666777888999999999999999999999999999999999999999998877777776544     1111 23344


Q ss_pred             heec-----cCCcccccccCCCccchHHHHHHHHHHHHHH--HHHHH-HHHhhcCcccchHHHHHHHHHHHHHHHHHHHH
Q 015392          232 GTAY-----SVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS--FFIHF-QKYVLGRPVVITRPLIFAAAIISTISAVMSLL  303 (408)
Q Consensus       232 ~~~Y-----s~~~PplrlKr~~~~~~l~i~~~~g~~~~~G--~~~~~-~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      .+.|     +.     ++|+.++.||+.++...+..+..|  ++... +....|.+. .....+.+.+...+.++++|+.
T Consensus       121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~  194 (299)
T PRK13592        121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVC  194 (299)
T ss_pred             HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHH
Confidence            5556     64     489999999999988777655333  22210 111112211 1111123333444557899999


Q ss_pred             hccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 015392          304 KDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (408)
Q Consensus       304 ~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~  343 (408)
                      +|++| |||++ |.+|+|+++|.|++.++...+..++.+.
T Consensus       195 KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~  232 (299)
T PRK13592        195 RKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILT  232 (299)
T ss_pred             HhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHH
Confidence            99999 88886 5999999999999988877776555443

>PRK08238 hypothetical protein; Validated

Probab=99.85  E-value=1.3e-19  Score=188.45  Aligned_cols=192  Identities=25%  Similarity=0.298  Sum_probs=145.0

Q ss_pred             hHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCC--
Q 015392          105 WDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--  182 (408)
Q Consensus       105 ~~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in--  182 (408)
                      +++.+.++++|++++|||.+++.++.++ +.+.+.. ..+.  ..+..+++++++..++.+++|++||+.|+|+||+|  
T Consensus       184 ~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~~~--~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~r  259 (479)
T PRK08238        184 FPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FGDL--QALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPR  259 (479)
T ss_pred             cCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cCCh--HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCC
Confidence            3445678999999999999999988644 7766633 2222  22234567778888999999999999999999998  


Q ss_pred             CCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392          183 KPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (408)
Q Consensus       183 kp~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~  262 (408)
                      |++||++||++|+++|+.++.+++++|+.+++.+|+..+.. ++..+++.++||.     ++||+++++++++++.++..
T Consensus       260 k~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~-~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr  333 (479)
T PRK08238        260 KRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLV-LLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLR  333 (479)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHH
Confidence            57999999999999999999999999999999999855443 3468888899996     48999999999888777665


Q ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCC
Q 015392          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGF  317 (408)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~  317 (408)
                      +..|..+      .+  ..  .+.|++ ++..++.+...+.|...|.++++..|.
T Consensus       334 ~~~G~~a------~~--~~--~s~wll-~~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        334 IIAGAAA------IG--VA--LSFWLL-AFSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHHHH------hc--cC--HHHHHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            5555432      12  11  222222 223334556678899999999888886

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.85  E-value=3.8e-19  Score=174.14  Aligned_cols=150  Identities=25%  Similarity=0.331  Sum_probs=116.7

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCC--CCC
Q 015392          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPD  185 (408)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in--kp~  185 (408)
                      ..+++++|++++||+.+++.++.+.. .+++..... ..  .+...++++++..++++++|++||++|+|+||+|  ||+
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~~-~~~a~~~~~-~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~   82 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFAA-PIFAGNLLN-PG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN   82 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHHH-HHHHHhhcc-cc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence            45688999999999999998875544 344432111 11  1223456666778889999999999999999996  689


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHH
Q 015392          186 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF  265 (408)
Q Consensus       186 RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~  265 (408)
                      ||+++|++|+++++.+++++.++|+.+++.+|+.+..+. +..+++.++||.     ++||++++++++++..++.-+..
T Consensus        83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~  156 (295)
T PRK12324         83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIA  156 (295)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998888766654 467788899996     48999999998887666544444


Q ss_pred             HH
Q 015392          266 SF  267 (408)
Q Consensus       266 G~  267 (408)
                      |.
T Consensus       157 G~  158 (295)
T PRK12324        157 GG  158 (295)
T ss_pred             HH
Confidence            43

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.52  E-value=1.8e-14  Score=138.71  Aligned_cols=260  Identities=14%  Similarity=0.136  Sum_probs=165.2

Q ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCC--CC
Q 015392          109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DL  186 (408)
Q Consensus       109 ~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp--~R  186 (408)
                      .+.++.|+|+.+|+-....+++...|+++|.++. +++     .++.+.++..+..+++|.+||+++.+.|..+++  .|
T Consensus        91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~R  164 (409)
T KOG1380|consen   91 GKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNR  164 (409)
T ss_pred             cchHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhccc
Confidence            3577899999999987777888888999886652 222     356778899999999999999999999998875  99


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHH-
Q 015392          187 PLASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ-  264 (408)
Q Consensus       187 Pl~sG~iS~~~a~~~~~~~~~l~l~l~~~-lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~-  264 (408)
                      |+++|++|+..|+.++.+....|+.+..+ +|+....++..=.++.+++|+-      +||.... |..++.+.|.+.| 
T Consensus       165 plv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP------lKrihii-nTWvGavVGAIPPL  237 (409)
T KOG1380|consen  165 PLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP------LKRIHII-NTWVGAVVGAIPPL  237 (409)
T ss_pred             ccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc------hhhhhhh-hhHHHHHhccCCcc
Confidence            99999999999999999998888777554 7877776665445677888984      8887764 5666666676665 


Q ss_pred             HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceec---chhhHHHHHHHHHHHHH
Q 015392          265 FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL---GKENVLRLCVYALFFAY  341 (408)
Q Consensus       265 ~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~l---G~~~a~~l~~~ll~~ay  341 (408)
                      +|+.+.     .|. ......++..+++.|-|..-..+-.+++  ++-.+.|.+.+++.=   -++.+.+.+..++.+.|
T Consensus       238 MGwAAa-----sg~-l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~  309 (409)
T KOG1380|consen  238 MGWAAA-----SGL-LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSY  309 (409)
T ss_pred             chhhhh-----ccC-CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhc
Confidence            565332     121 1111112222233332222222223332  233899999998853   33445555555544443


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc--cCCChHhhHHHHHHHHHH
Q 015392          342 GVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV--DLSNNASTYSFYMFIWKL  396 (408)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~--d~~~~~~~~~f~~~iw~l  396 (408)
                      ....       .....+.+.+-...+...+.+.+.+.  |.+.+.+.+-|+..+|-|
T Consensus       310 ~~~~-------~~lT~~wf~i~s~~~na~l~~~afkFY~~~d~~~aRklF~aSLlhL  359 (409)
T KOG1380|consen  310 AAPS-------TDLTTWWFAIESLPLNAYLAYLAFKFYRDRDYHNARKLFFASLLHL  359 (409)
T ss_pred             cccc-------cCcccceeeeccccHhHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence            2211       11112223333344455555555555  444455665555544433

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.42  E-value=5.2e-13  Score=123.31  Aligned_cols=227  Identities=17%  Similarity=0.181  Sum_probs=157.0

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhccc--CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccccCCC
Q 015392          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQS--FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDKVNK  183 (408)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~--~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~--e~D~ink  183 (408)
                      ...+.+.|+-..||+..-.++.+...|.++|...  ..++...   ..+++.++++..+.++|.+|.|+|.  .+|+...
T Consensus        57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~---~~fl~a~avlavh~agnlvntyfdf~kgid~kka  133 (359)
T KOG4581|consen   57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLA---TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKA  133 (359)
T ss_pred             HHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHH---HHHHHHhhheeeecccchhhhhhhhhhccccccc
Confidence            3578899999999999999999999999999643  2344432   2456677888899999999999997  5888877


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHH---HHhhChhH---HHHHHHHHHHHheeccCCcccccccCCCccchHHHHH
Q 015392          184 PDLPLASGDLSMGTGLAITLTLSLTSLAI---ALSLQSPP---LIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVT  257 (408)
Q Consensus       184 p~RPl~sG~iS~~~a~~~~~~~~~l~l~l---~~~lg~~~---l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~  257 (408)
                      .+|.++...+.+.++..+++++...|...   ...+++..   +.+.-+.++--.++|+.+   +.+|+..+ |.+++.+
T Consensus       134 ddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyial-gdliili  209 (359)
T KOG4581|consen  134 DDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIAL-GDLIILI  209 (359)
T ss_pred             cchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEec-cCEEEEE
Confidence            89999999999999999888887665443   23344321   111113455567889864   45677664 5665666


Q ss_pred             HHHHHHH-HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHH
Q 015392          258 VFGLVYQ-FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA  336 (408)
Q Consensus       258 ~~g~~~~-~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l  336 (408)
                      .+|.+.. +++ + .+    .+...|.+ .. -.+.+..-+=++.+-|+.+|.|.||++|+-|+++.+|+..+-.++..+
T Consensus       210 ~fgpiavlfaf-~-~q----~g~l~~~~-l~-yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~l  281 (359)
T KOG4581|consen  210 LFGPIAVLFAF-A-IQ----TGHLAIFP-LG-YAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAML  281 (359)
T ss_pred             eechHHHHHHH-H-Hh----cCceeEEe-eh-heeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHH
Confidence            6665433 222 2 12    12222211 00 011122223466788999999999999999999999999888888878


Q ss_pred             HHHHHHHHHHHHH
Q 015392          337 LFFAYGVSVIVGA  349 (408)
Q Consensus       337 l~~ay~~~~~~~~  349 (408)
                      +.+.|.+..+.+.
T Consensus       282 lf~py~lf~i~~~  294 (359)
T KOG4581|consen  282 LFAPYLLFFIFAL  294 (359)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888877665554

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=92.09  E-value=0.63  Score=45.99  Aligned_cols=35  Identities=17%  Similarity=0.055  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHhhhhhccccccccCCCCCCccc
Q 015392          155 KALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA  189 (408)
Q Consensus       155 l~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~  189 (408)
                      +..+......+..+..|++.|.|+|+.|+++.+..
T Consensus       180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLav  214 (303)
T COG1575         180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV  214 (303)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhHHhcCCcceee
Confidence            34445566677778899999999999998765444

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=89.60  E-value=2.7  Score=40.94  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=24.8

Q ss_pred             HHHHHHHHHhhhhhccccccccCCC-CCCcccccc
Q 015392          159 SAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD  192 (408)
Q Consensus       159 ~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~  192 (408)
                      ..++.......+||+-|+|.|+.++ +.-|..-|+
T Consensus       169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            4445556667889999999999755 566766664

>PRK13591 ubiA prenyltransferase; Provisional

Probab=88.21  E-value=1.2  Score=44.19  Aligned_cols=66  Identities=24%  Similarity=0.345  Sum_probs=37.2

Q ss_pred             hhhhccccccccCCC-CCCcccccccCHHHHHHHHHHHHH---HHHHHHHhhC-----hhHHHHHHHHHHHHheeccC
Q 015392          169 TVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSL---TSLAIALSLQ-----SPPLIFGLIVWFLLGTAYSV  237 (408)
Q Consensus       169 ~iNd~~D~e~D~ink-p~RPl~sG~iS~~~a~~~~~~~~~---l~l~l~~~lg-----~~~l~~~l~~~~~l~~~Ys~  237 (408)
                      .+||+-|.|.|+.++ +.-|+.=|+   +.+..+...+.+   +..+++...|     +...+.+++.+++..+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            689999999999876 456665553   333333222221   1222222222     23344455667778888885

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=87.88  E-value=4.4  Score=40.26  Aligned_cols=38  Identities=16%  Similarity=0.120  Sum_probs=25.2

Q ss_pred             HHHHHHhhhhhccccccccCCCC-CCcccccccCHHHHHHHH
Q 015392          162 LMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAIT  202 (408)
Q Consensus       162 l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~iS~~~a~~~~  202 (408)
                      +........||+-|+|.|+.+++ .-|.-   +.++.+..+.
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~---lG~~~a~~ly  223 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGKRSPIVR---LGTKRGAQLL  223 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCCcceeee---echHhHHHHH
Confidence            45666778899999999998764 34433   3345554443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=87.05  E-value=4.5  Score=39.58  Aligned_cols=37  Identities=24%  Similarity=0.161  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhhhhhccccccccCC-CCCCcccccc
Q 015392          156 ALLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD  192 (408)
Q Consensus       156 ~ll~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~  192 (408)
                      ..++.++....-..+|++.|+|.|+.. .|.-|..-|+
T Consensus       165 l~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       165 LYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            345666777778889999999999965 4778887774

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=85.66  E-value=3.1  Score=41.61  Aligned_cols=50  Identities=16%  Similarity=0.173  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHhhhhhccccccccCCCC-CCcccccccCHHHHHHHHHHHHHH
Q 015392          156 ALLSAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLSLT  208 (408)
Q Consensus       156 ~ll~~~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~iS~~~a~~~~~~~~~l  208 (408)
                      ..+...+........||+.|+|.|+.+++ .-|..   +.++.+..+...+.++
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~---lG~~~a~~l~~~l~~~  244 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYY---IGREKGVVLFAILFYA  244 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeee---EcHHhHHHHHHHHHHH
Confidence            34455566667788999999999998764 44443   3355555444443333

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=84.96  E-value=8.2  Score=37.94  Aligned_cols=57  Identities=16%  Similarity=0.159  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhhhhhccccccccCCC-CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhC
Q 015392          158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ  217 (408)
Q Consensus       158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg  217 (408)
                      ++..+...+...+|++-|.|.||.+. +.-|.   ++.++.+..+...+.+++.++...++
T Consensus       167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444577788999999999999765 34443   34577777777777666655544444

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=84.91  E-value=6.6  Score=38.42  Aligned_cols=37  Identities=11%  Similarity=0.047  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhhhhhccccccccCCC-CCCcccccc
Q 015392          156 ALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD  192 (408)
Q Consensus       156 ~ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~  192 (408)
                      ..+..++....-...|++.|+|.|+.++ +.-|..-|+
T Consensus       170 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~  207 (285)
T PRK12847        170 LYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN  207 (285)
T ss_pred             HHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence            3445566677777889999999999754 677776664

>PRK13592 ubiA prenyltransferase; Provisional

Probab=84.45  E-value=22  Score=35.34  Aligned_cols=46  Identities=11%  Similarity=0.254  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhccCCchhhhhcCCcccceecch---hhHHHHHHHHHHHHH
Q 015392          295 TISAVMSLLKDIPDEDGDKQFGFQSISSKLGK---ENVLRLCVYALFFAY  341 (408)
Q Consensus       295 ~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~---~~a~~l~~~ll~~ay  341 (408)
                      +...+-.++||+.|+|-|+.. +..=|+--|+   +.++..+..+..++.
T Consensus        57 ~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L~~~~l  105 (299)
T PRK13592         57 GFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFIVAVSV  105 (299)
T ss_pred             HHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence            334556788999999999655 7676776664   555555544433333

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=83.95  E-value=4.6  Score=39.38  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHhhhhhccccccccCC-CCCCcccccc
Q 015392          157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD  192 (408)
Q Consensus       157 ll~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~  192 (408)
                      .+..++.+..-..+||..|+|.|+.. .|.-|+.-|+
T Consensus       164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~  200 (282)
T TIGR01475       164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence            33455666677789999999999764 4677777673

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PLN02922 prenyltransferase

Probab=83.73  E-value=4.5  Score=40.42  Aligned_cols=41  Identities=10%  Similarity=0.084  Sum_probs=26.8

Q ss_pred             HHHHHHHHHhhhhhccccccccCCCC-CCcccccccCHHHHHHHH
Q 015392          159 SAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAIT  202 (408)
Q Consensus       159 ~~~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~iS~~~a~~~~  202 (408)
                      ...+........||+-|+|.|+.+++ .-|..   +.++.+..+.
T Consensus       196 p~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~---lG~~~a~~l~  237 (315)
T PLN02922        196 LVGLTTTLILFCSHFHQIDGDRAVGKMSPLVR---LGTEKGSRVV  237 (315)
T ss_pred             HHHHHHHHHHHHccCcchhhHHHcCccceeeE---EChHHHHHHH
Confidence            34455567778899999999998875 33433   3345554443

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=83.18  E-value=10  Score=37.28  Aligned_cols=45  Identities=13%  Similarity=-0.000  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhhhhhccccccccCCCC-CCcccccccCHHHHHHHHHHHH
Q 015392          159 SAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLS  206 (408)
Q Consensus       159 ~~~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~iS~~~a~~~~~~~~  206 (408)
                      ...+...+....||+-|+|.|+.+.+ .-|.   ++.++.+..+...+.
T Consensus       169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~  214 (285)
T TIGR02235       169 LVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVI  214 (285)
T ss_pred             HHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHH
Confidence            33456677788899999999998764 4443   334555554444333

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=82.61  E-value=6.7  Score=38.85  Aligned_cols=40  Identities=23%  Similarity=0.221  Sum_probs=24.6

Q ss_pred             HHHHHHHhccCCchhhhhc-CCcccceecch---hhHHHHHHHH
Q 015392          297 SAVMSLLKDIPDEDGDKQF-GFQSISSKLGK---ENVLRLCVYA  336 (408)
Q Consensus       297 ~~~~~~~~di~D~egD~~~-G~~Tlpv~lG~---~~a~~l~~~l  336 (408)
                      ..+...+||+-|.|.|++. .++.=|..=|+   +.+......+
T Consensus        59 ~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l  102 (295)
T PRK12324         59 SSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVL  102 (295)
T ss_pred             HHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHH
Confidence            3456789999999999986 23333444444   4454444333

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=82.17  E-value=10  Score=37.57  Aligned_cols=42  Identities=17%  Similarity=0.121  Sum_probs=26.2

Q ss_pred             HHHHHHHHHhccCCchhhhhcCCcccceecc---hhhHHHHHHHHH
Q 015392          295 TISAVMSLLKDIPDEDGDKQFGFQSISSKLG---KENVLRLCVYAL  337 (408)
Q Consensus       295 ~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG---~~~a~~l~~~ll  337 (408)
                      +...+...+||+-|.|.|++.+. +=|+.-|   .+.+......+.
T Consensus        65 l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~  109 (306)
T TIGR02056        65 CLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLF  109 (306)
T ss_pred             HHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHH
Confidence            33455688899999999987763 4455444   344544443333

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=81.92  E-value=11  Score=37.09  Aligned_cols=54  Identities=17%  Similarity=0.057  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhhhhhccccccccCCC-CCCcccccccCHHHHHHHHHHHHHHHHHHHH
Q 015392          158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIAL  214 (408)
Q Consensus       158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~  214 (408)
                      ++..+...+...+|++-|+|.|+..+ +.-|..   +..+.+..+..++.+++..+-.
T Consensus       172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~---lG~~~a~~~~~~~~~~a~~~~~  226 (282)
T PRK12875        172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATV---LGERRTYAYCAACWLLAAAAFA  226 (282)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHcCCccchhh---ccHhhHHHHHHHHHHHHHHHHH
Confidence            34456677778999999999999654 555553   3355666555555555544433

>PLN00012 chlorophyll synthetase; Provisional

Probab=80.21  E-value=5.7  Score=40.67  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=25.1

Q ss_pred             HHHHHHHHhhhhhccccccccCC-CCCCcccccc
Q 015392          160 AVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD  192 (408)
Q Consensus       160 ~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~  192 (408)
                      ..+...+....||+-|+|.|+.. ++.-|..-|+
T Consensus       261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            34556667889999999999865 5777876664

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=80.19  E-value=13  Score=36.43  Aligned_cols=46  Identities=24%  Similarity=0.252  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHhhhhhccccccccCCC-CCCcccccccCHHHHHHHHHHHH
Q 015392          158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLS  206 (408)
Q Consensus       158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~iS~~~a~~~~~~~~  206 (408)
                      +...+........||+.|+|.|+.++ +.-|.-=|   .+.+..+...+.
T Consensus       175 l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~  221 (293)
T PRK06080        175 LPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALL  221 (293)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHH
Confidence            34445566677889999999999765 34444334   444444443333

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=80.04  E-value=14  Score=35.77  Aligned_cols=29  Identities=21%  Similarity=0.110  Sum_probs=23.5

Q ss_pred             HHHHHHHhccCCchhhhhcCCcccceecch
Q 015392          297 SAVMSLLKDIPDEDGDKQFGFQSISSKLGK  326 (408)
Q Consensus       297 ~~~~~~~~di~D~egD~~~G~~Tlpv~lG~  326 (408)
                      ..+...+||+-|.|.|++. ++.=|..-|+
T Consensus        50 ~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~   78 (279)
T PRK12884         50 SGSANALNDYFDYEVDRIN-RPDRPIPSGR   78 (279)
T ss_pred             HHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence            4455788999999999988 7777877775

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00