Citrus Sinensis ID: 015421

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
Protein Sequence
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSKHDTK
Secondary Structure (PSIPRED)
cccccccccccEEccHHHHHHHHccccEEEHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHccccEEEEccccHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccEEEEEccccHHHcccccHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHccccEEEEccccccccccccccccEEEEccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccEEEEcccEEEEcccccccHHHHHHHHHccccccEEEEEccccccccccccccHHHHHcccccccEEEEEcccHHHHHHHHHHccccccEEEcccHHHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccEEEccccHHHHHHccccEEEHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHccccccEEEEEEEcHHHHccHHHccccEEEEEEccHHHHHccccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHccccEEEEcccccccccEEEEccEEEEEEcccEEEEEHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccEEEEEEEccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHccccccEEEcccHHHHHHHHHHHcccccEEEEccccccHHccccHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAfvggnlgnplseaafhcialpsskpkfQVAVVEVSSyqmeipnkyfcpTVSVVlnltpdhlerhktmknyaltkCHLFShmvntklgllpfgnqHLNEAIKghrfnlawigafpgvkidteaktasfevpavgvvsQLQLHNmkvmgrhnyHNAAVAALSVLGLDIGVDVEALNSTIeilrtpphrmqivhrdiqgvtwvddskatnlEATCTglmdlkghkcVILLGGqakvlngqesngfeklieplnhhrcvitfgySGVLIWKTLVnnglsipcfAVANMKDAVNHARRMatngdaivlspgcasfdefrnfehrgmVFQELAFFSKHDTK
Flexible Loop (DISEMBL)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIeilrtpphrmqIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQElaffskhdtk
Low Complexity Region (SEG)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSKHDTK
Disordered region (IsUnstruct)
*WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFF******
Disordered Region (DISOPRED)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA*FSK****
Disordered Region (DISEMBL)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSKHDTK
Disordered Region (DISPRO)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSKHDTK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	407	2.2.26 [Sep-21-2011]
B8FBS0	450	UDP-N-acetylmuramoylalani	yes	no	0.855	0.773	0.325	2e-40
Q6AJ52	456	UDP-N-acetylmuramoylalani	yes	no	0.867	0.774	0.327	4e-40
Q2IG29	462	UDP-N-acetylmuramoylalani	yes	no	0.869	0.766	0.318	6e-40
A8ZXW5	459	UDP-N-acetylmuramoylalani	yes	no	0.847	0.751	0.331	1e-38
Q5X1S4	447	UDP-N-acetylmuramoylalani	yes	no	0.815	0.742	0.296	2e-38
Q7V0A5	473	UDP-N-acetylmuramoylalani	yes	no	0.874	0.752	0.295	3e-38
Q1IKG8	453	UDP-N-acetylmuramoylalani	yes	no	0.859	0.772	0.297	4e-38
Q5ZSA3	447	UDP-N-acetylmuramoylalani	yes	no	0.815	0.742	0.293	8e-38
Q5WTI5	447	UDP-N-acetylmuramoylalani	yes	no	0.815	0.742	0.293	1e-37
Q8R9G4	450	UDP-N-acetylmuramoylalani	yes	no	0.823	0.744	0.330	1e-36

>sp|B8FBS0|MURD_DESAA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=murD PE=3 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 200/387 (51%), Gaps = 39/387 (10%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           L    + G  V+ E++ A++ I     I+AVTGTNGK+TV + +G+M+   GI AFVGGN
Sbjct: 85  LEAAREKGVPVIGEVELASRFI--QAPIIAVTGTNGKTTVTSLIGEMMEASGISAFVGGN 142

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           +GNPL       +     + K QV V E+SS+Q++   + F P V+++ N+T DH++R+ 
Sbjct: 143 IGNPL-------VNYAKGEDKAQVVVAEISSFQLDTI-ESFAPKVALLTNVTEDHMDRYD 194

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
            M+ YA +K  +F +       +L  G    + A+ G      W   F G + + EA  A
Sbjct: 195 GMEGYAASKARVFMNQTGADFAILN-GCDKWSRAMCGGIKASQWF--FTG-REEAEAGIA 250

Query: 198 SFEVPAVGVVSQLQLH------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
                A+   +  Q H       M + G HN  NAA AAL+         VE +   I+ 
Sbjct: 251 -MNAGAMDFFTGAQKHWSLSLKKMTLSGEHNKENAAAAALAAYAAG--ASVEGIQGAIDA 307

Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
            +  PHR++ V R++  V + DDSKATN++A    L  L+G    + L     ++ G++ 
Sbjct: 308 FKGLPHRLEFV-REVMDVKYYDDSKATNVDAV---LRALEGFNAPVHL-----IMGGRDK 358

Query: 312 NG-FEKLIEPLNHH--RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
            G F  L + +     R  +T   +G++   T   +G S+       ++ AV  A+R A 
Sbjct: 359 GGHFRDLKDMVEQKAARLYVTGEAAGII---TSALSG-SVEVVQAGTIEKAVEFAKRAAR 414

Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVF 395
            G+ +VLSPGCASFD+++N++ RG  F
Sbjct: 415 PGEVVVLSPGCASFDQYKNYKERGKDF 441

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).
Desulfatibacillum alkenivorans (strain AK-01) (taxid: 439235)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 9

>sp|Q6AJ52|MURD_DESPS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=murD PE=3 SV=1

 Score =  166 bits (419), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 188/382 (49%), Gaps = 29/382 (7%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA L ++G +V+ EL  AA V+ R   ++A+TGTNGK+TV + VG +L   G   FVGGN
Sbjct: 91  LARLRRAGVQVLGELALAAPVLDR--PVVAITGTNGKTTVTSLVGDLLRASGKRVFVGGN 148

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           +G PL       + L SS  +  V V+EVSS+Q+E+    F P ++++LNL+PDHL+RH 
Sbjct: 149 IGVPL-------LDLLSSGDEVDVIVLEVSSFQLELAGD-FSPHIALLLNLSPDHLDRHG 200

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
            +  Y   K HLF     T + ++  G+  L     G      ++  F     D      
Sbjct: 201 DLAGYRAAKMHLFQKQGMTDIAIVS-GDDPLCLLSDGCGEASRYLFGFSAAS-DISVAAG 258

Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILRTPP 256
            FE    G      L +  +  R  + NAA AA     L     D+E     I       
Sbjct: 259 HFEFDFAGQREIYSLRDSALDNRTGWLNAAPAAFIARSLACAKADIE---RGIAAFTLDA 315

Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
           HRM+ V   I GV + +DSKATN  A  + L  L   + +++ GG+ K       + +  
Sbjct: 316 HRMEPVA-SIAGVQYYNDSKATNTGAVISALQQLV--RVILIAGGRDK------GDNYRL 366

Query: 317 LIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
           L E +  H R +I  G +  L+   L +    +  +   ++ +AV+ A   A  GD+++L
Sbjct: 367 LREAVAGHVRTLICIGEATPLLVAALED---VVQVYRATSLAEAVSLAASFAEEGDSVLL 423

Query: 376 SPGCASFDEFRNFEHRGMVFQE 397
           SP CASFD F N++ RG  F+ 
Sbjct: 424 SPACASFDMFANYQDRGEQFRR 445

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Desulfotalea psychrophila (strain LSv54 / DSM 12343) (taxid: 177439)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q2IG29|MURD_ANADE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=murD PE=3 SV=1

 Score =  165 bits (417), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 194/395 (49%), Gaps = 41/395 (10%)

Query: 22  LQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQML-NHLGIEAFVGG 76
           +Q+ +R    V  E++ AA+ +   + I+ +TGTNGKST     G +L  H     FVGG
Sbjct: 87  IQAARRRGVPVWGEVELAARFL-GGLPIVGITGTNGKSTTTALTGALLARHR--RTFVGG 143

Query: 77  NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
           NLG PLSE         S +P    AVVE+SS+Q+E   + F   V+ VLN+TPDHL+R+
Sbjct: 144 NLGTPLSELVL------SGEPA-AAAVVELSSFQLEGIER-FRARVAAVLNVTPDHLDRY 195

Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKIDTE 193
             +  YA  K  LF+      + +    +     +  A +G      +    P    D  
Sbjct: 196 PDVDAYAAAKARLFATQEPDDVAVANARDPRALAMAGASRGDLHTFGFGAPVPASARDEG 255

Query: 194 AK-----TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
            +     TA +  P      + QLHN  + GRHN  NA  A L      +GV  EA+ + 
Sbjct: 256 GEPGPGGTAIWYTPRGRAPERYQLHNRALRGRHNRENAMAAVLCAR--LMGVPGEAVQAG 313

Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVL 306
           ++      HR+++V  + +GV WV+DSKATN+++T  GL        + V+++GG+ K  
Sbjct: 314 LDAFPGLHHRLELVA-EGRGVEWVNDSKATNVDSTFVGLAAFPAGAPRVVLIMGGRGK-- 370

Query: 307 NGQESNGFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
                      + PL   R   ++T G     I + L +   + PC    ++  AV  A 
Sbjct: 371 -----KAPYAPLRPLFGGRVKALLTIGEDAPAIERELGDLAPTEPC---GDLPGAVRRAA 422

Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
            ++  GD ++LSP CAS+D+F ++E RG  F+ LA
Sbjct: 423 VLSGPGDVVLLSPACASYDQFASYEERGEAFRRLA 457

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Anaeromyxobacter dehalogenans (strain 2CP-C) (taxid: 290397)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|A8ZXW5|MURD_DESOH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=murD PE=3 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 193/380 (50%), Gaps = 35/380 (9%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  VM E++ AA+ + + +   AVTGTNGK+TV T +G ML   G + FVGGN+G PL
Sbjct: 93  EKGIPVMGEMELAARFVTKPVA--AVTGTNGKTTVTTLLGDMLKASGRQVFVGGNIGAPL 150

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  I          +AVVEVSS+Q++  ++ F P V+V+LN+  DHL R+     Y
Sbjct: 151 -------IGFADKGENADMAVVEVSSFQLDT-SETFRPHVAVLLNIAEDHLARYVDFNAY 202

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-----FNLAWIGAFPGVKIDT--EAK 195
             +K  +F +     + ++   + H+ +A KG R     FN         V  DT  E  
Sbjct: 203 VRSKGRIFENQEADDVAVINGADFHVLQASKGIRSRKLTFNAGKNTQDGAVIGDTAVEIV 262

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
           TA  +   + V S L      +  RHN  N  +AA ++  L +G  VE + + ++  +  
Sbjct: 263 TAGTKTATISVTSPL------MRARHNMEN--IAAATLAALAMGATVEGIQAAVDGFQGL 314

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
            HR++ V   I  V + DDSKATN +A    L +    + V+LLGG+ K   G +    +
Sbjct: 315 RHRLEYVA-SIDDVHYFDDSKATNPDAVRRAL-EFFTSRVVLLLGGEDK---GCDYGVLK 369

Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
            +I      R V+ FG +   I   +  NG S+  +   +M +AV  A  +A  GDA++L
Sbjct: 370 NVIR--ERARAVVLFGAAKEKIRMAI--NG-SVSLWDAGSMAEAVRRAHELAAPGDAVLL 424

Query: 376 SPGCASFDEFRNFEHRGMVF 395
           SP C+SFD + ++ HRG  F
Sbjct: 425 SPACSSFDSYESYAHRGDDF 444

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Desulfococcus oleovorans (strain DSM 6200 / Hxd3) (taxid: 96561)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q5X1S4|MURD_LEGPA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila (strain Paris) GN=murD PE=3 SV=1

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/395 (29%), Positives = 192/395 (48%), Gaps = 63/395 (15%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           Q+G  +  +++  A+ I  S  ++A+TGTNGKSTV T VG+M    G    V GN+G P+
Sbjct: 87  QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  + +   +  + + V+E+SS+Q+++      P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
              K                   Q +    K   FN   +   P     T+ K  SF  +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQTDIKCISFGKD 237

Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
            P++G   ++ Q             L + ++ + G HN+ NA  A         G+ ++ 
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
           + + ++     PHR Q V R++ GV W++DSK TN+ AT + +  + G    K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354

Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
           Q K  +      F++L +P++   R ++  G     I   L      +P    ++++ AV
Sbjct: 355 QGKGAD------FQELAQPVSEFVRSIVLIGEDADKIESALAK---VVPVVRASSLEGAV 405

Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
             A+  A  GD ++LSP CAS D FR+F HRG VF
Sbjct: 406 TIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVF 440

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Legionella pneumophila (strain Paris) (taxid: 297246)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q7V0A5|MURD_PROMP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=murD PE=3 SV=1

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 194/389 (49%), Gaps = 33/389 (8%)

Query: 21  LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
           L + G  V+ E++ A + + ++I  + +TGTNGK+TV   +  +L    + A   GN+G 
Sbjct: 99  LKERGIVVIGEINIAWESL-KNINWIGITGTNGKTTVTHLLSHILRENNLFAPFAGNIGT 157

Query: 81  PLSEAAFHCIALPSSKPK-FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
           PL E A+      S+K K     V E+SS+Q+EI      P + +    TPDHL+RHKT+
Sbjct: 158 PLCEIAY------STKSKNIDWIVAELSSFQIEIATHCIKPKIGIWTTFTPDHLDRHKTL 211

Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
            NY   K  L      ++  +  + +Q+L E  K    N  WI   P V   +++    +
Sbjct: 212 DNYFKIKNSLLKQ---SEFRIYNYDDQYLKENFKS-LLNGIWITTNPNV---SDSDHCDY 264

Query: 200 EVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
            +     + +     L L N K+ G HN  N  +A  +     IG+  E + + +     
Sbjct: 265 WINNENFIVERREKLLSLKNFKLKGNHNTQNLLLAVAA--ARKIGLSTERIKNALLSYEQ 322

Query: 255 PPHRMQ-IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
            PHRM+ I  RD   +  ++DSKATN +++  G+  +KG   +I+ GG+ K  NG +S  
Sbjct: 323 LPHRMETIFQRDELEI--INDSKATNFDSSVAGINAIKGSP-IIISGGRLK--NG-DSIE 376

Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN--GD 371
           + K+I      + V  FG S   + K ++  G         ++ + +N+A     N   +
Sbjct: 377 WVKIINK--KAKAVFLFGESSQTLKKLILEGGFKNDILTFNDLSEVINYAYSYIKNNQSE 434

Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQELAF 400
            ++ SP C+SFD+FR++E RG +F++L +
Sbjct: 435 TLLFSPSCSSFDQFRDYEQRGDIFKKLIY 463

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q1IKG8|MURD_KORVE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Koribacter versatilis (strain Ellin345) GN=murD PE=3 SV=1

 Score =  159 bits (402), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 185/380 (48%), Gaps = 30/380 (7%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  V+ E++ AAQ +P  +  +A+TG+NGK+T  +  G +L   G +  VGGN+G P 
Sbjct: 90  KQGIPVIGEIELAAQFVPGHV--IAITGSNGKTTTTSLCGDILQSGGKKTLVGGNIGTP- 146

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  I+          +V+E+SS+Q+E   + F P ++ +LN+TPDHL+RH T + Y
Sbjct: 147 ------AISFAQLANDDTWSVLEISSFQLETIER-FRPEIAAILNITPDHLDRHGTFEKY 199

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS--FE 200
           A  K  +F +       +L   N+   E  K  +  + W      VK  T  +     F 
Sbjct: 200 AAAKERIFENQREHDFAILNADNEPCVEIAKRVKSQVLWFSRQHEVKHGTFVREDKIYFR 259

Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
            P  G    + + +M + G HN  N  V A   +G+   V  E +   +   +   HR++
Sbjct: 260 DPK-GEREIMPVADMLLKGAHNVEN--VLAAVCVGVAASVAPEQIRKAVSQFKAVEHRLE 316

Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
                ++GV + +DSKATN++AT   L      K V L      +L G++      ++  
Sbjct: 317 YTA-TVKGVDYYNDSKATNVDATIKALESFS--KGVHL------ILGGKDKGSPYTVLND 367

Query: 321 LNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
           L H R   V T G +   I   +      +       +++AV  A + A  GD ++L+P 
Sbjct: 368 LLHERAKTVYTIGAAAAKIEAEV----KGVEVVHAETLENAVKLASQKAVKGDVVLLAPA 423

Query: 379 CASFDEFRNFEHRGMVFQEL 398
           CASFD+F+++EHRG +F+EL
Sbjct: 424 CASFDQFQSYEHRGRIFKEL 443

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Koribacter versatilis (strain Ellin345) (taxid: 204669)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q5ZSA3|MURD_LEGPH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=murD PE=3 SV=1

 Score =  158 bits (399), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 191/395 (48%), Gaps = 63/395 (15%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           Q+G  +  +++  A+ I  S  ++A+TGTNGKSTV T VG+M    G    V GN+G P+
Sbjct: 87  QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  + +   +  + + V+E+SS+Q+++      P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
              K                   Q +    K   FN   +   P      + K  SF  +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237

Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
            P++G   ++ Q             L + ++ + G HN+ NA  A         G+ ++ 
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
           + + ++     PHR Q V R++ GV W++DSK TN+ AT + +  + G    K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354

Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
           Q K  +      F++L +P++   R ++  G     I   L      +P    ++++ AV
Sbjct: 355 QGKGAD------FQELAQPVSEFVRSIVLIGEDADKIESALAK---VVPVVRASSLEGAV 405

Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
             A+  A  GD ++LSP CAS D FR+F HRG VF
Sbjct: 406 TIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVF 440

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) (taxid: 272624)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q5WTI5|MURD_LEGPL UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila (strain Lens) GN=murD PE=3 SV=1

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 191/395 (48%), Gaps = 63/395 (15%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           Q+G  +  +++  A+ I  S  ++A+TGTNGKSTV T VG+M    G    V GN+G P+
Sbjct: 87  QAGALIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  + +   +  + + V+E+SS+Q+++      P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
              K                   Q +    K   FN   +   P      + K  SF  +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237

Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
            P++G   ++ Q             L + ++ + G HN+ NA  A         G+ ++ 
Sbjct: 238 APSMGNWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
           + + ++     PHR Q V R++ GV W++DSK TN+ AT + +  + G    K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354

Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
           Q K  +      F++L +P++   R ++  G     I   L      +P    ++++ AV
Sbjct: 355 QGKGAD------FQELAQPVSEFVRSIVLIGEDADKIESALAK---VVPVVRASSLEGAV 405

Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
             A+  A  GD ++LSP CAS D FR+F HRG VF
Sbjct: 406 TIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVF 440

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Legionella pneumophila (strain Lens) (taxid: 297245)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q8R9G4|MURD_THETN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=murD PE=3 SV=1

 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/390 (33%), Positives = 202/390 (51%), Gaps = 55/390 (14%)

Query: 25  GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
           G  ++ E++ A ++      I A+TGTNGK+T  + +G+M  + G + +V GN+G PL  
Sbjct: 92  GLEILGEVELAYRL--SKAPIYAITGTNGKTTTTSLLGEMFRNAGRKVYVAGNIGYPLIY 149

Query: 85  AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
           AA    A P+        V E+SS+Q+E   K F P +S ++N+TPDHL+RHKT +NYA 
Sbjct: 150 AALE--AGPNDH-----IVAEISSFQLETV-KEFRPKISCIINITPDHLDRHKTFENYAN 201

Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
            K  +F +    +  +L + +             + W     G+K   +AK   F    V
Sbjct: 202 IKGRIFENQREEEYVVLNYDDP------------VTW-----GLKERAKAKVFPFSRKKV 244

Query: 205 ----GVVSQ--LQLHNMKVM--------GRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
                 V +  L L N KV+        G HN  NA +AA SV  L  G++V+A+ +T+ 
Sbjct: 245 LENGAYVKEGFLYLQNKKVIKVEDIYIPGEHNLENA-LAASSVAYLS-GIEVDAIETTLR 302

Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
             +   HR++ V  +I+G+ + +DSK TN +A+   +  LK    V++ GG  K   G E
Sbjct: 303 TFKGVEHRIEFVA-EIEGIKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSE 357

Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP---CFAVANMKDAVNHARRMA 367
            + F K  +     R +I  G +   I KT +    S P    F V ++++AV  A  +A
Sbjct: 358 FDEFVKTFD--KKVRKLILIGQTAQKIKKTALK--YSYPEEDIFLVDSLEEAVRKAYEVA 413

Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
             GD+++LSP CAS+D F+NFE RG  F++
Sbjct: 414 EKGDSVLLSPACASWDMFKNFEERGKAFKK 443

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
297739715	479	unnamed protein product [Vitis vinifera]	0.960	0.816	0.737	1e-170
147779061	806	hypothetical protein VITISV_002512 [Viti	0.761	0.384	0.649	1e-124
302753318	492	hypothetical protein SELMODRAFT_229823 [	0.931	0.770	0.510	1e-108
302804608	492	hypothetical protein SELMODRAFT_119501 [	0.931	0.770	0.505	1e-107
302804600	492	hypothetical protein SELMODRAFT_119124 [	0.931	0.770	0.515	1e-105
168039117	521	predicted protein [Physcomitrella patens	0.936	0.731	0.502	1e-104
225454866	307	PREDICTED: UDP-N-acetylmuramoylalanine--	0.724	0.960	0.520	5e-97
147774763	926	hypothetical protein VITISV_028258 [Viti	0.670	0.294	0.522	9e-97
303273586	647	predicted protein [Micromonas pusilla CC	0.901	0.567	0.351	1e-53
253997371	452	UDP-N-acetylmuramoylalanine--D-glutamate	0.825	0.743	0.317	6e-44

>gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 290/393 (73%), Positives = 336/393 (85%), Gaps = 2/393 (0%)

Query: 13  LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
           L++ GL+ LLQSGKRV+SELDFAA+++PRSIKILAVTGTNGKSTV TF GQML+HLGIE 
Sbjct: 87  LESHGLSFLLQSGKRVLSELDFAAEILPRSIKILAVTGTNGKSTVATFSGQMLSHLGIEV 146

Query: 73  FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
           FVGGNLG PLSEAA  C+  PS KP FQVAVVEVSSYQ+E+PNK+FCP+V+VVLNLT DH
Sbjct: 147 FVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVAVVLNLTSDH 206

Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HRFNLAWIGAFPGVKI 190
           LERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++   +  NLAWIGAFPGVK+
Sbjct: 207 LERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNEVNLAWIGAFPGVKV 266

Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
           D E K AS  VPA+GVVS+L+L  + VMG HNY+NAAVAALSVLGLD+G+D EA++STIE
Sbjct: 267 DKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAISSTIE 326

Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
            LR PPHRMQIVH+D  GVTW+DDSKATN+EAT TGL+ LK  K VILLGG AKV N QE
Sbjct: 327 KLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSVILLGGLAKVSNSQE 386

Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
           SNGFE+L+EPL +HRCVITFG+SG LI KTL ++GLSIPCF  AN++DAVN AR +A  G
Sbjct: 387 SNGFEQLVEPLKYHRCVITFGFSGPLIQKTLSDDGLSIPCFEAANLEDAVNCARSVARYG 446

Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQELAFFSK 403
           DA+VLSPGCASFDEFRNFEHRG VFQEL F S+
Sbjct: 447 DAVVLSPGCASFDEFRNFEHRGKVFQELVFSSE 479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779061|emb|CAN60311.1| hypothetical protein VITISV_002512 [Vitis vinifera]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/348 (64%), Positives = 261/348 (75%), Gaps = 38/348 (10%)

Query: 59  TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYF 118
           T    ML+HLGIE FVGGNLG PLSEAA  C+  PS KP FQVAVVEVSSYQ+E+PNK+F
Sbjct: 234 TLAFPMLSHLGIEVFVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHF 293

Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HR 176
           CP+V+VVLNLT DHLERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++   + 
Sbjct: 294 CPSVAVVLNLTSDHLERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNE 353

Query: 177 FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236
            NLAWIGAFPGVK+D E K AS  VPA+GVVS+L+L  + VMG HNY+NAAVAALSVLGL
Sbjct: 354 VNLAWIGAFPGVKVDKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGL 413

Query: 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV 296
           D+G+D EA++STIE LR PPHRMQIVH+D  GVTW+DDSKATN+EAT TGL+ LK  K V
Sbjct: 414 DMGIDTEAISSTIEKLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSV 473

Query: 297 ILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANM 356
           ILLGG AK                                  KTL +BGLSIPCF  AN+
Sbjct: 474 ILLGGLAK----------------------------------KTLSDBGLSIPCFEAANL 499

Query: 357 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA--FFS 402
           +DAVN AR +A  GDA+VLSPGCASFDEFRNFEHRG VFQEL   F+S
Sbjct: 500 EDAVNCARSVARYGDAVVLSPGCASFDEFRNFEHRGKVFQELGSCFYS 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii] gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/386 (51%), Positives = 259/386 (67%), Gaps = 7/386 (1%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA  + SG   +SEL FAA+  P+++KI AVTGTNGKSTV TF GQ+L   G+  FVGGN
Sbjct: 102 LAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGN 161

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG P S+AA  C   PS  P +Q AV+EVSSYQ+E+P   F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFKFPSDDPPYQAAVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNL----AWIGAFPGVKIDTE 193
           +M+NY  TKC LF  M ++KL ++P  ++ L +    +++N     AW+GA PGV++D++
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHADEFLRKV--AYKYNSGSTKAWLGALPGVQLDSQ 278

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           A+ A   VP     ++L L  +K +G HN  NAA A+L  L LD+GVD   L + I  L 
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLT 338

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
             PHRMQIV +D +GV W++DSKATN++A  TG+  L   K VILLGG AKVL+   S G
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDEDGSLG 398

Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
           F+KL + L +HR ++TFG  G  I K L    +SIPCF    M+DAV  A +++  GD I
Sbjct: 399 FKKLSDLLQNHRAIVTFGAFGEQIEKELKEANVSIPCFRSLTMEDAVARAEKLSKQGDII 458

Query: 374 VLSPGCASFDEFRNFEHRGMVFQELA 399
           +LSP CASFDEFRNF+HRG VF +LA
Sbjct: 459 LLSPACASFDEFRNFQHRGEVFGQLA 484

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii] gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/386 (50%), Positives = 258/386 (66%), Gaps = 7/386 (1%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA  + SG   +SEL  AA+  P+++KI AVTGTNGKSTV TF GQ+L   G+  F+GGN
Sbjct: 102 LAYAMDSGIPTISELGLAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFIGGN 161

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG P S+AA  C   PS  P +QV V+EVSSYQ+E+P   F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFKFPSDDPPYQVTVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN----LAWIGAFPGVKIDTE 193
           +M+NY  TKC LF  M ++KL ++P  ++ L +    +++N     AW+GA PG+++D++
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHADEFLRKV--AYKYNSGSTKAWLGALPGIQLDSQ 278

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           A+ A   VP     ++L L  +K +G HN  NAA A+L  L LD+GVD   L + I  L 
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLT 338

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
             PHRMQIV +D +GV W++DSKATN++A  TG+  L   K VILLGG AKVL+   S G
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDQDGSLG 398

Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
           F+KL + L +HR ++TFG  G  I K L    +SIPCF    M+DAV  A +++  GD I
Sbjct: 399 FKKLSDLLQNHRAIVTFGAFGEQIEKELKEANVSIPCFRSLTMEDAVARAEKLSKQGDII 458

Query: 374 VLSPGCASFDEFRNFEHRGMVFQELA 399
           +LSP CASFDEFRNFEHRG VF +LA
Sbjct: 459 LLSPACASFDEFRNFEHRGEVFGQLA 484

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii] gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/386 (51%), Positives = 259/386 (67%), Gaps = 7/386 (1%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA  + SG   +SEL FAA+  P+++KI AVTGTNGKSTV TF GQ+L   G+  FVGGN
Sbjct: 102 LAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGN 161

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG P S+AA  C   PS  P +QV V+EVSSYQ+E+P   F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFMFPSDDPPYQVTVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN----LAWIGAFPGVKIDTE 193
           +M+NY  TKC LF  M ++KL ++P G++ L +    +++N     AW+GA PGV++D +
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHGDEFLRKV--AYKYNSGSTKAWLGALPGVQLDNQ 278

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           A+ A   VP     ++L L  +K +G HN  NAA A+L  L LD+GVD   L + I  L 
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDLGVDEHKLQAAIGQLT 338

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
             PHRMQIV +D +GV W++DSKATN++A  TG+  L   K VILLGG AKVL+   S G
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDQDGSLG 398

Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
           F+KL + L +HR ++TFG  G  I K L    +SIPCF    M+DAV  A +++  GD I
Sbjct: 399 FKKLSDLLQNHRAIVTFGAFGKQIEKELKEANVSIPCFRSLTMEDAVAIAEKLSKQGDII 458

Query: 374 VLSPGCASFDEFRNFEHRGMVFQELA 399
           +LSP CASFDEFRNFEHRG VF +LA
Sbjct: 459 LLSPACASFDEFRNFEHRGEVFGQLA 484

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens] gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella patens] gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/384 (50%), Positives = 255/384 (66%), Gaps = 3/384 (0%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           +A  +Q+G    SEL FAA  +P +IK+ AVTGTNGKSTV TF  Q+L + G+  FVGGN
Sbjct: 134 IAAAIQAGVPAFSELGFAAAALPGNIKVAAVTGTNGKSTVTTFTSQILRNAGVRTFVGGN 193

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG PLS+    C+A P+  P F VAVVEVSSYQ+E+P   F P  +V+LNLTPDHLERHK
Sbjct: 194 LGTPLSDGVLQCLAFPAEDPPFSVAVVEVSSYQLELPGS-FHPKAAVILNLTPDHLERHK 252

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWIGAFPGVKIDTEAK 195
           +M+ Y   KC +FS M  + + ++P  +  L    A+ G +   AW+G  PGV++D +A+
Sbjct: 253 SMEAYGSIKCRVFSRMEASDVAIIPQSDVLLRRLAAMSGSQATRAWMGGLPGVQLDKDAR 312

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
            A   VP  GV ++L L +++ +G HN HNA  AAL  L LD+G+  E + + I  L+ P
Sbjct: 313 RAIVVVPTTGVEARLYLSSLQAVGTHNAHNAGTAALLALSLDVGLQSEDIQAAIPHLKAP 372

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
           PHRM+IVH+D QGV WV+DSKATN+++T  G+  + G K V+LLGGQAKV  G    GF 
Sbjct: 373 PHRMEIVHQDDQGVVWVNDSKATNVDSTSVGIRSIVGKKAVVLLGGQAKVGVGSGGLGFG 432

Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
            L+E L  HR V+ FG SG+ I + L + GLSI C       DAV  A  +A  GDA++L
Sbjct: 433 VLVESLQSHRAVVLFGASGLAIEQELRHAGLSITCTYTELFADAVQLAGSLAQPGDAVLL 492

Query: 376 SPGCASFDEFRNFEHRGMVFQELA 399
           SPGCASFD+F+NFEHRG VF +LA
Sbjct: 493 SPGCASFDQFKNFEHRGQVFADLA 516

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454866|ref|XP_002275450.1| PREDICTED: UDP-N-acetylmuramoylalanine--D-glutamate ligase-like [Vitis vinifera]

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 239/386 (61%), Gaps = 91/386 (23%)

Query: 13  LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
           L++ GL+ LLQSGKR++S+LDFAA+++PRSIKILA TGTNGKST+ TF GQML+HLGIE 
Sbjct: 10  LESHGLSFLLQSGKRILSKLDFAAEILPRSIKILAATGTNGKSTIATFSGQMLSHLGIEV 69

Query: 73  FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
            V GNLG PLSEAA  C+  PS KP FQVAVVEVSSYQ+E+PNK+FCP+V V L+LT DH
Sbjct: 70  IVEGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVVVGLDLTSDH 129

Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
           LERHKTMKNYA+TKC L SHM N+KLG+LPF               L+ +G   G  IDT
Sbjct: 130 LERHKTMKNYAITKCRLLSHMSNSKLGILPFVAA------------LSVLGLDMG--IDT 175

Query: 193 EAKTASFE---VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
           EA +++ E   VP          H M++                                
Sbjct: 176 EAISSTIEKLRVPP---------HRMQI-------------------------------- 194

Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
                       VH+D   VTW+DDSKATN+EAT  GL+ L   K VI LGG AKV N Q
Sbjct: 195 ------------VHKDSYEVTWIDDSKATNVEATYIGLLGLNEQKSVIPLGGLAKVSNSQ 242

Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
           ES+GFE L                     KTL +NG SIPCF  AN++DAVN AR +A  
Sbjct: 243 ESDGFEPL---------------------KTLSDNGFSIPCFEAANLEDAVNCARSVARY 281

Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVF 395
           GDA++LSPGCASFDEFRNFEHRG VF
Sbjct: 282 GDAVILSPGCASFDEFRNFEHRGKVF 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774763|emb|CAN60280.1| hypothetical protein VITISV_028258 [Vitis vinifera]

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 194/371 (52%), Positives = 230/371 (61%), Gaps = 98/371 (26%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
           + SGKR++S+LDFAA+++PRSIKILA TGTNGKST+ TF GQML+HLGIE          
Sbjct: 432 MHSGKRILSKLDFAAEILPRSIKILAATGTNGKSTIATFSGQMLSHLGIE---------- 481

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
                              VAVVEVSSYQ+E+PNK+FCP++ V LNLT DHLERHKTMKN
Sbjct: 482 -------------------VAVVEVSSYQLEVPNKHFCPSIVVGLNLTSDHLERHKTMKN 522

Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
           YA+TK  L  +                                                V
Sbjct: 523 YAITKKRLPVY------------------------------------------------V 534

Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
           PA+GVVS+L+L  + VMGRHNY+N AVAALS LGLD+ +D EA++STIE LR PPHRMQI
Sbjct: 535 PAIGVVSKLKLGALNVMGRHNYYNVAVAALSDLGLDMXIDTEAISSTIEKLRVPPHRMQI 594

Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
           VH+D   VTW+DDSKATN+EAT  GL+ L   K VI LGG AKV N QES+GFE L    
Sbjct: 595 VHKDSYEVTWIDDSKATNVEATYIGLLGLNEQKSVIPLGGLAKVSNSQESDGFEPL---- 650

Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
                            KTL +NG SIPCF  AN++DAVN AR +A  GDA++LSPGCAS
Sbjct: 651 -----------------KTLSDNGFSIPCFEAANLEDAVNCARSVARYGDAVILSPGCAS 693

Query: 382 FDEFRNFEHRG 392
           FDEFRNFEHRG
Sbjct: 694 FDEFRNFEHRG 704

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|303273586|ref|XP_003056153.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462237|gb|EEH59529.1| predicted protein [Micromonas pusilla CCMP1545]

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 159/452 (35%), Positives = 215/452 (47%), Gaps = 85/452 (18%)

Query: 20  CLLQSGKR--VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           C  + G +  V+SEL FA+Q +P+ + I+A++GTNGKSTV +F  Q+L       F+GGN
Sbjct: 199 CQTKQGSKCTVISELAFASQCLPKMLPIVAISGTNGKSTVCSFTAQLLASCDCRTFMGGN 258

Query: 78  LGNPLSEAAF----------HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLN 127
           +G PLS+ A           H   L    P +  AVVE SSYQ++ P        + +LN
Sbjct: 259 IGKPLSDCALEFILAEHICGHLADLGHHWP-YDAAVVECSSYQLDHPGTLRF-DAACILN 316

Query: 128 LTPDHLERHKTMKNYALTKCHLFSHMVNT-KLGLLP-----------------FGNQHL- 168
           LTPDHLERHK+M NYA  K  +F+ +  T  L +LP                     H+ 
Sbjct: 317 LTPDHLERHKSMANYATAKTQIFAGLRGTHTLAVLPKRESARGRHQSYQVESDSTTDHIV 376

Query: 169 -----------------------------NEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
                                        NE +      LA IG+ PGVK+D   K A  
Sbjct: 377 DLDYDGATLLEKCREAVIKTLMRRVSETPNERVACIGGRLAHIGSLPGVKVDLNTKIAIV 436

Query: 200 EVPAVGVV------SQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGVDVEALNSTIEIL 252
            +P+          S + L  +  +G HN  NA++A L    L      V  L   ++ L
Sbjct: 437 HLPSNRSSSRQNSPSYVDLSAVSSLGTHNILNASIALLMAHSLSPKDFTVARLKVGLDRL 496

Query: 253 RTPPHRMQIVHR----DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
           +  PHRMQ+V +      +G+ WV+DSKATN+EA   GL            G +A    G
Sbjct: 497 KLLPHRMQLVAQTGNPSFRGIHWVNDSKATNIEAAIVGLQSY---------GRRALAKTG 547

Query: 309 QESN--GFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
             SN  GF  L+  L  H+ VITFG SG LI   L   G++ P   V+ + DAV  AR +
Sbjct: 548 TASNELGFAALVPALLKHQGVITFGESGSLIANELREAGIN-PKAEVSQLSDAVTLARAV 606

Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
              G A++LSP CASFDEF +F  RG VF  L
Sbjct: 607 VRRGGAVILSPACASFDEFDSFAQRGEVFTHL 638

Source: Micromonas pusilla CCMP1545

Species: Micromonas pusilla

Genus: Micromonas

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylotenera mobilis JLW8] gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera mobilis JLW8]

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 200/390 (51%), Gaps = 54/390 (13%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
           +Q G  V+ +++  AQ  P S K++A+TG NGK+TV T VG+M    G++  V GN+G P
Sbjct: 90  IQRGIPVVGDVELFAQYRPTSAKLIAITGANGKTTVTTLVGEMCKSAGLKTIVAGNIGLP 149

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
           + +       L    P   V V+E+SS+Q+E  N       + +LNL+ DH++R+ +M++
Sbjct: 150 VLD------TLSMETP--DVYVLELSSFQLETTNSLLA-DAATMLNLSEDHMDRYDSMQS 200

Query: 142 YALTKCHLFSH---------------MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP 186
           YA+ K H+F H               M   KL  + FG   L++ +    + +  +    
Sbjct: 201 YAVAKAHIFYHAKLQVLNRDDAWSLMMARAKLAQVTFG---LDDVVAEQDYGIKQVNGET 257

Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
            +              + G    + + ++K+ G HN  NA  A     G  IG+D   + 
Sbjct: 258 WL--------------SCGTHDLMNIRDLKIAGLHNASNALAAMALCRG--IGLDFAPII 301

Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
            T+   +  PHR++ V  +I  V + DDSK TN+ ATC  L  L   K V++ GG+ K  
Sbjct: 302 QTLYNFKGLPHRVEWV-ANIDDVDYYDDSKGTNVGATCAALSGLS-QKVVLIAGGEGK-- 357

Query: 307 NGQESNGFEKLIEPLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
            GQ+   F  L E ++ + R V+  G    LI   L++   ++P +  A++ +AV  A++
Sbjct: 358 -GQD---FSPLKEAVSTNARAVVLIGRDAPLIEAELLST--NVPMYHAADLPEAVTIAQK 411

Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
           +A  GDA++LSP CASFD F+N+ HR  VF
Sbjct: 412 LAQTGDAVLLSPACASFDMFKNYVHRAEVF 441

Source: Methylotenera mobilis JLW8

Species: Methylotenera mobilis

Genus: Methylotenera

Family: Methylophilaceae

Order: Methylophilales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
TIGR_CMR|CHY_2071	451	CHY_2071 "UDP-N-acetylmuramoyl	0.916	0.827	0.295	7e-38
TIGR_CMR|CPS_4467	471	CPS_4467 "UDP-N-acetylmuramoyl	0.889	0.768	0.291	8.5e-33
TIGR_CMR|SO_4221	439	SO_4221 "UDP-N-acetylmuramoyla	0.422	0.391	0.333	6.5e-31
TIGR_CMR|GSU_3071	452	GSU_3071 "UDP-N-acetylmuramoyl	0.316	0.285	0.366	5.5e-30
UNIPROTKB|Q9KPG5	440	murD "UDP-N-acetylmuramoylalan	0.415	0.384	0.319	3.8e-28
TIGR_CMR|VC_2403	440	VC_2403 "UDP-N-acetylmuramoyla	0.415	0.384	0.319	3.8e-28
TIGR_CMR|SPO_1187	466	SPO_1187 "UDP-N-acetylmuramoyl	0.395	0.345	0.333	1.8e-21
TIGR_CMR|BA_4051	450	BA_4051 "UDP-N-acetylmuramoyla	0.690	0.624	0.280	2.5e-21
TIGR_CMR|CJE_0482	402	CJE_0482 "UDP-N-acetylmuramoyl	0.336	0.340	0.309	3.1e-21
UNIPROTKB|Q97RU8	450	murD "UDP-N-acetylmuramoylalan	0.643	0.582	0.298	4.5e-21

TIGR_CMR|CHY_2071 CHY_2071 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 118/400 (29%), Positives = 200/400 (50%)

Query:     2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
             W L +      L    +A  L+ G  V+ E++ A + +     I+AVTGTNGK+T  +++
Sbjct:    69 WELLVVSPGVPLTEEPIAYSLKEGIPVLGEIELAYKEL--KAPIIAVTGTNGKTTTTSWI 126

Query:    62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
             G++L   G +  + GN+G PL EA          + ++    +EVSS+Q+E   K F P 
Sbjct:   127 GEVLKIAGFKTLIAGNIGYPLIEAV---------EEEWDAVSLEVSSFQLETI-KSFKPK 176

Query:   122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW 181
             V+V+LNLTPDHL+RHKT++ Y   K  +F +   T + +L + +  +    +     + +
Sbjct:   177 VAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKTPGRVFY 236

Query:   182 IGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
                   ++     K     V ++GV  ++  + N+ + G HN  NA +A ++      GV
Sbjct:   237 FSQKEELEEGVFVKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENA-LATVAACW-SFGV 294

Query:   241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
               + +   +   +   HR++ V  +I GV +V+DSK TN ++T   L   +    V++ G
Sbjct:   295 SGKNIERGLRNFQGVAHRLEKV-AEINGVLYVNDSKGTNPDSTIKALNSYE-RPIVLIAG 352

Query:   301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVA-NMKD 358
             G+ K       N F +L   +    R  I  G     + + L   G     + VA + +D
Sbjct:   353 GRNK------GNSFGELAREIREKVRFTILVGECREELKEALEMVGYDK--YVVAESFED 404

Query:   359 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
             AV  A+ +A  GD ++LSP  AS+D F+N+E RG +F+ L
Sbjct:   405 AVKKAKELARPGDVVLLSPAAASWDMFKNYEERGELFKRL 444

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|CPS_4467 CPS_4467 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 115/394 (29%), Positives = 195/394 (49%)

Query:    13 LKATGLACLLQSGKRVMSELDFAAQVIPRSI---KILAVTGTNGKSTVVTFVGQMLNHLG 69
             L + G+  L+     V+ +++    V    I   K+LAVTG+NGKSTVV+ +  +   +G
Sbjct:    87 LVSEGITALIPENCLVIGDVELFCLVNNSRISPMKMLAVTGSNGKSTVVSLLASLAKAIG 146

Query:    70 IEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ--VAVVEVSSYQMEIPNKYFCPTVSVVLN 127
             + A + GN+G P+     H   + +S+   Q  + +VE+SS+Q+E  +       SV LN
Sbjct:   147 VNAALAGNIGEPILNL-LHRENVYNSQLANQPDIVIVELSSFQLETLSSMHAIAASV-LN 204

Query:   128 LTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG 187
             L+ DHL+RHKT+ NY   K  ++      K+ ++   +Q  N  +         +     
Sbjct:   205 LSDDHLDRHKTLANYQAIKQSIYPQ---AKIAVVSREDQASNTLVAAQEIISFGLNKPEQ 261

Query:   188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
                  +A      V   G  + + +  + + G HN  N  +AAL+ LG   G  + A+  
Sbjct:   262 DCFGLQAIDNKM-VMMFGEQALISIDELPLAGMHNALNY-MAALA-LGYSAGWSLSAMTE 318

Query:   248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATC---TGLMD-LKG-HKCVILLGGQ 302
              +       HR Q V  +   + W++DSKATN+ AT    TGL+  L G +K +++ GG 
Sbjct:   319 NLAGFMGLAHRCQRVASE-DYIQWINDSKATNVGATLAAITGLVPTLTGQNKLILIAGGD 377

Query:   303 AKVLNGQESNGFEKLIE-PLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVN 361
              K   G + +    ++   +N    +IT G  G  I  +LV++ + +       +++AV 
Sbjct:   378 GK---GADFSALTTILNCDVNQ---LITLGKDGAEI-ASLVSDAIQVD-----TLREAVE 425

Query:   362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
              A+++A  GD ++LSP CAS D F+N++ RG  F
Sbjct:   426 QAKQIAKPGDMVLLSPACASIDMFKNYQVRGEQF 459

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|SO_4221 SO_4221 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 208 (78.3 bits), Expect = 6.5e-31, Sum P(2) = 6.5e-31
 Identities = 63/189 (33%), Positives = 97/189 (51%)

Query:   210 LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGV 269
             + +  + ++G HN+ N  +AA++++   +GVD + + +         HR ++V     GV
Sbjct:   257 MPITEVSLIGSHNHANL-LAAMALV-YAVGVDKQVMANVARTFTGLSHRCEVVGVK-GGV 313

Query:   270 TWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCV 327
             T+V+DSKATN+ AT   L  L  H    +++ GG  K   G +   F  L EPL     +
Sbjct:   314 TYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGK---GAD---FSPLEEPLTKVTHL 367

Query:   328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
             IT G  G  I    +  G       V +M  AV  A ++AT+GD ++LSP CAS D + N
Sbjct:   368 ITLGRDGNKI--AALKEG----AIKVDSMAAAVAKAAQLATSGDIVLLSPACASLDMYSN 421

Query:   388 FEHRGMVFQ 396
             F  RG  F+
Sbjct:   422 FMARGDDFR 430

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|GSU_3071 GSU_3071 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 230 (86.0 bits), Expect = 5.5e-30, Sum P(2) = 5.5e-30
 Identities = 51/139 (36%), Positives = 82/139 (58%)

Query:    23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
             ++G+ V++E++ A++ I  +  ++A+TGTNGK+T  T  G++    G   FVGGN+GNPL
Sbjct:    90 RAGREVITEIELASRFI--TAPLVAITGTNGKTTTTTLTGELFAGCGFRTFVGGNIGNPL 147

Query:    83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
              E       L  +       VVE+SS+Q+E     F PTV+V+LN+T DHL+R+ T + Y
Sbjct:   148 IE-------LVETGAAVDRVVVEISSFQLEWIRS-FRPTVAVLLNITEDHLDRYATYQEY 199

Query:   143 ALTKCHLFSHMVNTKLGLL 161
                K  +F +   +   +L
Sbjct:   200 IDAKARIFKNQTASDWAVL 218

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

UNIPROTKB|Q9KPG5 murD "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 199 (75.1 bits), Expect = 3.8e-28, Sum P(2) = 3.8e-28
 Identities = 60/188 (31%), Positives = 91/188 (48%)

Query:   215 MKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
             + ++GRHN  N    +A L   G++  + ++AL S   +     HR Q+V  D  G+ WV
Sbjct:   265 LSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLT----HRCQVV-ADNHGIKWV 319

Query:   273 DDSKATNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFG 331
             +DSKATN+ +T   L  LK   +  +L+GG  K   G +      ++  L    C   FG
Sbjct:   320 NDSKATNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLCC--FG 374

Query:   332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
               G           L        +M+  +   R    +GD ++LSP CASFD+F+NF  R
Sbjct:   375 VDGHQFMP------LHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMAR 428

Query:   392 GMVFQELA 399
             G +F +LA
Sbjct:   429 GDIFAQLA 436

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|VC_2403 VC_2403 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 199 (75.1 bits), Expect = 3.8e-28, Sum P(2) = 3.8e-28
 Identities = 60/188 (31%), Positives = 91/188 (48%)

Query:   215 MKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
             + ++GRHN  N    +A L   G++  + ++AL S   +     HR Q+V  D  G+ WV
Sbjct:   265 LSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLT----HRCQVV-ADNHGIKWV 319

Query:   273 DDSKATNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFG 331
             +DSKATN+ +T   L  LK   +  +L+GG  K   G +      ++  L    C   FG
Sbjct:   320 NDSKATNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLCC--FG 374

Query:   332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
               G           L        +M+  +   R    +GD ++LSP CASFD+F+NF  R
Sbjct:   375 VDGHQFMP------LHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMAR 428

Query:   392 GMVFQELA 399
             G +F +LA
Sbjct:   429 GDIFAQLA 436

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|SPO_1187 SPO_1187 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 168 (64.2 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
 Identities = 59/177 (33%), Positives = 83/177 (46%)

Query:   219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
             G HN+ NA  A  +   L  G+  +A+ + +      PHR QIV  +  GVT+V+DSKAT
Sbjct:   296 GAHNHQNACAAYAACRAL--GLSPKAIEAGMRSYPGLPHRSQIV-AEAGGVTYVNDSKAT 352

Query:   279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIW 338
             N++A    L   K  + +   GG  K       NG   L E L  +  VI    +G  + 
Sbjct:   353 NVDAALKALGAFKRIRWIC--GGLQKEGGIAALNG--GLAEVLKAY--VIGREAAGFALQ 406

Query:   339 KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
                    L +       M +AV  A   A  GD ++L+P  ASFD++ NFE RG  F
Sbjct:   407 -------LEVESEVCTTMDEAVARAMAEAEPGDTVLLAPAAASFDQYDNFERRGEDF 456

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|BA_4051 BA_4051 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 269 (99.8 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 83/296 (28%), Positives = 142/296 (47%)

Query:   100 QVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159
             +V V E+SS+Q+ +  + F P ++  LNL   HL+ H T K Y L K ++F +       
Sbjct:   162 EVVVTELSSFQL-MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYS 220

Query:   160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMG 219
             ++   +  +       +           ++     K  +    A  VV   ++ ++ + G
Sbjct:   221 VINADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKAEKVV---EVDDIVLPG 277

Query:   220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
             +HN  N  +AA+S+  L +GV  EA+ + ++      HR++ V   I    + +DSKATN
Sbjct:   278 QHNLENI-LAAMSIAKL-LGVSNEAITAVLKRFTGVKHRLEYV-TTINNRKFYNDSKATN 334

Query:   280 LEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWK 339
             + AT   L        V+L GG  +       N F+ LI    + + ++TFG +   + +
Sbjct:   335 MLATEKALSAFT-QPTVLLAGGLDR------GNEFDDLIPYFKNVKAIVTFGQTAPKLVR 387

Query:   340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
                  GL     +V  + +AV  A   +T+GD I+LSP CAS+D+F+ FE RG +F
Sbjct:   388 AAEKAGLDT-IESVDTLDEAVVKAYAHSTDGDVILLSPACASWDQFKTFEERGDIF 442

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|CJE_0482 CJE_0482 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 185 (70.2 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
 Identities = 48/155 (30%), Positives = 78/155 (50%)

Query:    21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
             L+Q  K + SE DF   ++P+S+ I   +GTNGK+T       +L+H+G  A +GGN+G 
Sbjct:    71 LIQKAKNLQSEYDFFYDIMPKSVWI---SGTNGKTTTTQMATHLLSHIG--AVMGGNVGT 125

Query:    81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
             PL+E            P  ++ ++E SS+ +   +K   P +  +L ++PDHL  H +  
Sbjct:   126 PLAEL----------NPYEKLWILETSSFTLHYTHKAK-PEIYALLPISPDHLSWHGSFD 174

Query:   141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH 175
             NY   K  +   M    + +LP    + N   K H
Sbjct:   175 NYVQDKLSVLKRMNECDVTILP--KIYANTPTKAH 207

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

UNIPROTKB|Q97RU8 murD "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 267 (99.0 bits), Expect = 4.5e-21, P = 4.5e-21
 Identities = 84/281 (29%), Positives = 140/281 (49%)

Query:    22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
             L  G  V++E++ A  +      I+ +TG+NGK+T  T +G++L   G    + GN+G P
Sbjct:    93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150

Query:    82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
              S+ A     + S K      V+E+SS+Q+ +  + F P ++V+ NL P H++ H +   
Sbjct:   151 ASQVA----QIASDK---DTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202

Query:   142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFE 200
             Y   K ++ + M      +L F NQ L + +       A +  F  + K+D  A     +
Sbjct:   203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDG-AYLEDGQ 258

Query:   201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
             +   G V  +  + + V G HN  NA +A ++V  L   VD + +  T+       HR+Q
Sbjct:   259 LYFRGEVV-MAANEIGVPGSHNVENA-LATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQ 315

Query:   261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
              V  DI+GV + +DSK+TN+ AT   L      K V++ GG
Sbjct:   316 FVD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGG 355

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2RK81	MURD_MOOTA	6, ., 3, ., 2, ., 9	0.3171	0.9066	0.8109	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.9	0.737
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025526001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (402 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037717001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (527 aa)	•		•			•	•		0.989
	GSVIVG00003087001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (510 aa)	•		•	•		•	•		0.983
	GSVIVG00017740001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (320 aa)	•		•	•			•		0.975
	GSVIVG00003447001	SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (374 aa)	•		•				•		0.975
	GSVIVG00038228001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (344 aa)	•		•				•		0.973
	GSVIVG00000431001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (510 aa)	•		•			•	•	•	0.954
	GSVIVG00027244001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (424 aa)	•						•		0.948
	GSVIVG00032399001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (228 aa)	•						•		0.946
	GSVIVG00021622001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (423 aa)	•						•		0.940
	GSVIVG00027807001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (471 aa)	•		•				•		0.919

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	407
COG0771	448	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-gluta	2e-84
TIGR01087	433	TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-gl	2e-80
PRK03803	448	PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	4e-62
PRK14106	450	PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-58
PRK02006	498	PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	3e-57
PRK02472	447	PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	3e-57
PRK02705	459	PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-55
PRK01710	458	PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-47
PRK01390	460	PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-47
PRK03806	438	PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-43
PRK04308	445	PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	6e-41
PRK03815	401	PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	7e-41
PRK01438	480	PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	3e-40
PRK01368	454	PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-37
PRK04663	438	PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	5e-37
PRK00683	418	PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-36
PRK04690	468	PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	8e-35
PRK00141	473	PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	3e-33
pfam08245	178	pfam08245, Mur_ligase_M, Mur ligase middle domain	9e-28
PRK03369	488	PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-24
COG0770	451	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide sy	1e-20
PRK00139	460	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-gluta	2e-20
TIGR01085	464	TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide sy	5e-20
COG0769	475	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synt	1e-18
TIGR01143	417	TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--	7e-18
PRK11929	958	PRK11929, PRK11929, putative bifunctional UDP-N-ac	7e-16
PRK11929	958	PRK11929, PRK11929, putative bifunctional UDP-N-ac	2e-13
TIGR01081	448	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamm	3e-09
COG0773	459	COG0773, MurC, UDP-N-acetylmuramate-alanine ligase	4e-09
PRK14022	481	PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-g	3e-08
TIGR01082	448	TIGR01082, murC, UDP-N-acetylmuramate--alanine lig	9e-08
PRK00421	461	PRK00421, murC, UDP-N-acetylmuramate--L-alanine li	2e-05
PRK14573	809	PRK14573, PRK14573, bifunctional D-alanyl-alanine	1e-04
PRK11930	822	PRK11930, PRK11930, putative bifunctional UDP-N-ac	5e-04

>gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

 Score =  264 bits (676), Expect = 2e-84
 Identities = 110/387 (28%), Positives = 180/387 (46%), Gaps = 42/387 (10%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
             +G  ++ +++   ++   +  I+A+TGTNGK+T  + +  +L   G++A +GGN+G P
Sbjct: 90  KAAGIEIIGDIELFYRLSGEA-PIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMK 140
             E                V V+E+SS+Q+E   +    P ++V+LN++ DHL+RH +M+
Sbjct: 149 ALELL-------EQAEPADVYVLELSSFQLETTSS--LRPEIAVILNISEDHLDRHGSME 199

Query: 141 NYALTKCHLFSHMVNTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFP----GVKIDTEAK 195
           NYA  K  +      T++ ++   +      A +  +  + W         G  I     
Sbjct: 200 NYAAAKLRILEGQ--TEVAVINADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL 257

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
               E              +K+ G HN  N  AA+A    LG+     +EAL+S      
Sbjct: 258 VFKGEKLLPAD-------ELKLPGAHNLENALAALALARALGVPPEAILEALSS----FT 306

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
             PHR++ V  +  GV +++DSKATN++AT   L    G   +++ GG  K         
Sbjct: 307 GLPHRLEFV-GEKDGVLFINDSKATNVDATLAALSGFDG-PVILIAGGDDK------GAD 358

Query: 314 FEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
           F  L E L    + ++  G     I   L              +++AV  AR +A  GD 
Sbjct: 359 FSPLAEILAKVIKKLVLIGEDAEKIAAAL--KEAGPSLVICETLEEAVQLARELAQPGDV 416

Query: 373 IVLSPGCASFDEFRNFEHRGMVFQELA 399
           ++LSP CASFD+F+NFE RG  F+EL 
Sbjct: 417 VLLSPACASFDQFKNFEERGEEFKELV 443

Length = 448

>gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase

 Score =  253 bits (649), Expect = 2e-80
 Identities = 96/380 (25%), Positives = 178/380 (46%), Gaps = 31/380 (8%)

Query: 21  LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
             + G  V+ +++   +++P    ++A+TGTNGK+T  + +  +L   G++AF+GGN+G 
Sbjct: 82  AAKRGIPVVGDIELFLRLVPL--PVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGT 139

Query: 81  PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
           P  E               ++ V+E+SS+Q+E       P ++++LN++ DHL+ H + +
Sbjct: 140 PALEVLDQ--------EGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFE 190

Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
           +Y   K  +F+      + +L   +       +  +  + W           +       
Sbjct: 191 DYVAAKLKIFARQTEGDVAVLNADDPRFARLAQKSKAQVIWFS-------VEKDAERGLC 243

Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
           +   G+  +       ++G HN  N   A    L   +G+++EA+   +   +  PHR++
Sbjct: 244 IRDGGLYLKPNDLEGSLLGLHNAENILAAIA--LAKSLGLNLEAILEALRSFKGLPHRLE 301

Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
            V     GV + +DSKATN+ AT   L        ++++GG  K         F  L   
Sbjct: 302 YVG-QKNGVHFYNDSKATNVHATLAALSAFDN-PVILIVGGDDK------GADFSPLAPA 353

Query: 321 LN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
                + V+  G     I   L      +  + V ++++AV  AR +A+ GD ++LSP C
Sbjct: 354 AAGKVKAVLAIGEDAAKIAPLL--KEAGLSVYLVESLEEAVQAAREVASPGDVVLLSPAC 411

Query: 380 ASFDEFRNFEHRGMVFQELA 399
           ASFD+F+++E RG  F+EL 
Sbjct: 412 ASFDQFKSYEERGEKFKELV 431

[Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 433

>gnl|CDD|235160 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  206 bits (526), Expect = 4e-62
 Identities = 120/376 (31%), Positives = 180/376 (47%), Gaps = 53/376 (14%)

Query: 41  RSIK--ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPK 98
           R  K  ++A+TG+NGKSTV T VG+M    G    VGGN+G P         AL      
Sbjct: 104 REAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP---------ALDLLSDD 154

Query: 99  FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMV 154
            ++ V+E+SS+Q+E  +      V+ VLN++ DH++R+  ++ Y   K  ++      + 
Sbjct: 155 PELYVLELSSFQLETTHSLNA-EVATVLNISEDHMDRYSDLEAYHQAKHRIYRGAKQVVF 213

Query: 155 NTK----LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
           N        L+P  NQ              W     G++        +     +  V +L
Sbjct: 214 NRDDALTRPLVPD-NQPCLSFGLNAPDFDEW-----GLREGDGETYLAHGFERLMPVREL 267

Query: 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQIVHRDIQ 267
                K+ G HN  NA +AAL+ LG   G+  EA+   +E+LRT    PHR + V R++ 
Sbjct: 268 -----KLRGSHNLANA-LAALA-LGEAAGLPKEAM---LEVLRTFTGLPHRCEWV-REVA 316

Query: 268 GVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
           GV + +DSK TN+ AT   +  L  H   K V++ GG  K   G +   F  L EP+  +
Sbjct: 317 GVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGK---GAD---FSPLREPVAKY 370

Query: 325 -RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
            R V+  G     I   L     ++P   VA + +AV  A  +A  GD ++LSP CAS D
Sbjct: 371 VRAVVLIGRDADKIAAALGG---AVPLVRVATLAEAVAKAAELAQAGDIVLLSPACASLD 427

Query: 384 EFRNFEHRGMVFQELA 399
            F+NFE RG  F++  
Sbjct: 428 MFKNFEARGDDFRQAV 443

Length = 448

>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  196 bits (501), Expect = 2e-58
 Identities = 111/382 (29%), Positives = 180/382 (47%), Gaps = 41/382 (10%)

Query: 28  VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
           V+ E++ A +       I+A+TGTNGK+T  T +G++  + G +  V GN+G PL +A  
Sbjct: 95  VIGEVELAYRFSKA--PIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPLIDAV- 151

Query: 88  HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
                        + V EVSS+Q+E   K F P V  +LN+TPDHL+RHKTM+NY   K 
Sbjct: 152 -----EEYGED-DIIVAEVSSFQLET-IKEFKPKVGCILNITPDHLDRHKTMENYIKAKA 204

Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP---------GVKIDTEAKTAS 198
            +F +   +   +L + +       K  +  +                GV +       S
Sbjct: 205 RIFENQRPSDYTVLNYDDPRTRSLAKKAKARV-----IFFSRKSLLEEGVFVKNGKIVIS 259

Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
                  V+    +  + + G HN  N  AA AA       +G+  + + +T++  +   
Sbjct: 260 LGGKEEEVID---IDEIFIPGEHNLENALAATAA----AYLLGISPDVIANTLKTFKGVE 312

Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
           HR++ V  +I GV +++DSK TN +A    L   +    V++ GG  K   G + + F K
Sbjct: 313 HRIEFV-AEINGVKFINDSKGTNPDAAIKALEAYET-PIVLIAGGYDK---GSDFDEFAK 367

Query: 317 LIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 376
             +     + +I  G +   I +     G          +++AV  A  +A  GD ++LS
Sbjct: 368 AFK--EKVKKLILLGETAQEIAEAARKYGFD-NILFAETLEEAVKKAYEIAKPGDVVLLS 424

Query: 377 PGCASFDEFRNFEHRGMVFQEL 398
           P CAS+D F+NFE RG +F+EL
Sbjct: 425 PACASWDMFKNFEERGRLFKEL 446

Length = 450

>gnl|CDD|234995 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  194 bits (496), Expect = 3e-57
 Identities = 128/424 (30%), Positives = 185/424 (43%), Gaps = 64/424 (15%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPR------SIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
           +A   + G  V  E++  AQ +        + K+LA+TGTNGK+T     G +    G +
Sbjct: 90  VAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149

Query: 72  AFVGGNLGNPLSEAAFHCI---ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNL 128
             V GN+     +     I   ALP       V V+E+SS+Q+E       P  + VLN+
Sbjct: 150 VAVAGNISPAALDKLMEAIDAGALP------DVWVLELSSFQLET-THTLAPDAATVLNI 202

Query: 129 TPDHLERHKTMKNYALTKCHLFS---------------HMV--NTKLGLLPFGNQHLNEA 171
           T DHL+ H +M  YA  K  +F                 M         + FG   L+E 
Sbjct: 203 TQDHLDWHGSMAAYAAAKARIFGPRTVRVLNRDDARVMAMAPPGGAADAVTFG---LDEP 259

Query: 172 IKGHRFNL------AWIGA-----FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
                + L      AW+                 K  +   P + +   +    +++ G 
Sbjct: 260 AADGDYGLLRDNGMAWLVEAEDRDAADPAPSRRRKKDAAPPPDIRLKRLMPADALRIRGL 319

Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
           HN  NA +AAL+ L   IG+    L   +   R  PHR+++V   I GV + DDSK TN+
Sbjct: 320 HNAANA-LAALA-LARAIGLPAAPLLHGLREYRGEPHRVELV-ATIDGVDYYDDSKGTNV 376

Query: 281 EATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWK 339
            AT   L  L   + V++ GG  K   GQ+   F  L  P+  H R V+  G     I  
Sbjct: 377 GATVAALDGL-AQRVVLIAGGDGK---GQD---FSPLAAPVARHARAVVLIGRDAPAIRA 429

Query: 340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF---- 395
            L   G  +P    A +++AV  A  +A  GDA++LSP CAS D FRN+ HR  VF    
Sbjct: 430 ALAGTG--VPLVDAATLEEAVRAAAALAQPGDAVLLSPACASLDMFRNYAHRAEVFRAAV 487

Query: 396 QELA 399
           +ELA
Sbjct: 488 EELA 491

Length = 498

>gnl|CDD|235041 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  193 bits (493), Expect = 3e-57
 Identities = 113/378 (29%), Positives = 173/378 (45%), Gaps = 77/378 (20%)

Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+ +TG+NGK+T  T +G+ML   G  A + GN+G P SE A        +       V+
Sbjct: 110 IIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYPASEVA------QKATAD-DTLVM 162

Query: 105 EVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--------- 154
           E+SS+Q M I    F P ++V+ N+ P HL+ H T +NY   K ++  +           
Sbjct: 163 ELSSFQLMGIET--FRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINF 220

Query: 155 ----------NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
                      TK  ++PF      +   G       +  F G KI              
Sbjct: 221 DQEEVKELAKQTKATVVPFSTT--EKVEDGAYIKDGAL-YFKGEKI-------------- 263

Query: 205 GVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRM 259
                +   ++ + G HN  N  AA+AA  +LG    V  EA+    E+L T     HR+
Sbjct: 264 -----MAADDIVLPGSHNLENALAAIAAAKLLG----VSNEAI---REVLSTFSGVKHRL 311

Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQE-SNGFEKL 317
           Q V   I G  + +DSKATN+ AT      L G ++ V+LL G      G +  N F++L
Sbjct: 312 QYV-GTIDGRKFYNDSKATNILAT---QKALSGFNQPVVLLAG------GLDRGNEFDEL 361

Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
           +  L + + ++ FG +   + +     G  I      N++DAV  A  ++  GD I+LSP
Sbjct: 362 VPYLKNVKAMVVFGETAEKLARAAEKAG--ITVVEADNVEDAVPKAYELSEPGDVILLSP 419

Query: 378 GCASFDEFRNFEHRGMVF 395
            CAS+D+++ FE RG  F
Sbjct: 420 ACASWDQYKTFEERGDEF 437

Length = 447

>gnl|CDD|235059 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  189 bits (483), Expect = 1e-55
 Identities = 122/396 (30%), Positives = 187/396 (47%), Gaps = 54/396 (13%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  V+ E++ A + + + I  + +TGTNGK+TV   +  +L   G+ A   GN+G   
Sbjct: 90  ERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYAA 148

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
            E A   +       K    V E+SSYQ+E   +   P + +    TPDHLERH T++NY
Sbjct: 149 CELA---LLRSGKAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENY 204

Query: 143 ALTKCHLFSHMVNTKLGLL----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
              K  L      +++ +L    P+  QH +   KG+     W          T+ K AS
Sbjct: 205 FAIKASLLE---RSEIRILNGDDPYLRQHRSSWPKGY-----WTS--------TQGK-AS 247

Query: 199 FEVPAVGVVSQ-----------LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEAL 245
               A G + +             L  +K+ G HN  N   AVAA  + GL      EAL
Sbjct: 248 LLGQADGWILEEGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARLAGLSAEAIAEAL 307

Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAK 304
            S   +    PHR++ +   I G+ +++DSKATN +A   GL  + G   VIL+ GG+AK
Sbjct: 308 RSFPGV----PHRLERI-GTINGIDFINDSKATNYDAAEVGLKAVPGP--VILIAGGEAK 360

Query: 305 VLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
                + + + K I+       V+ FG +   + + L  +G +     V  + +AV  A 
Sbjct: 361 ---QGDDSAWLKQIK--AKAAAVLLFGEAAPTLAQRLQESGYTGEYEIVETLDEAVPRAF 415

Query: 365 RMATNGDAIV--LSPGCASFDEFRNFEHRGMVFQEL 398
            +A    A    LSP CASFD+++NFE RG  F++L
Sbjct: 416 ELAKELQAKSVLLSPACASFDQYKNFEERGDHFRQL 451

Length = 459

>gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  168 bits (427), Expect = 1e-47
 Identities = 119/405 (29%), Positives = 184/405 (45%), Gaps = 78/405 (19%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  + SE++   +  P   K+  VTG++GK+T  T + +ML   G + +VGGN+G PL
Sbjct: 99  EEGAYITSEMEEFIKYCPA--KVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTPL 156

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
               F  I     + K    V+E+SS+Q+   +    P V+VV NL+P+HL+ HK M+ Y
Sbjct: 157 ----FSNIEEIKEEDK---VVLELSSFQLMTMDV--SPEVAVVTNLSPNHLDVHKDMEEY 207

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-----A 197
              K ++F +     L +L   N+  N   K                   EAK      +
Sbjct: 208 IDAKKNIFKYQSENDLLVLNKDNEITNGMEK-------------------EAKGDVVKFS 248

Query: 198 SFEVPAVGVVSQ-----------LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEA 244
             E    G   +            +  ++K+ G HN  N  AA  A++    D  V +E+
Sbjct: 249 RKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVN---DD--VSIES 303

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
           +           HR + V R+I GV + +DS A++   T  GL   +  K VIL+ G   
Sbjct: 304 MKKVATTFSGVEHRCEFV-REINGVKYYNDSIASSPTRTLAGLKAFE--KPVILIAG--- 357

Query: 305 VLNGQESNGFEKLI--EPL-----NHHRCVITFGYSGVLIWKTLVN----NGLSIPCFAV 353
                   G++K I  EPL        + +I  G +   I +         G+ IP   V
Sbjct: 358 --------GYDKKIPFEPLAEEGYEKIKTLILMGATKNKIKEAFEKVISEKGIDIPIVIV 409

Query: 354 ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
            ++++AV  A+ +A  GD + LSP CASFD F NFE RG  F+E+
Sbjct: 410 NSLEEAVKVAKEIAEKGDIVTLSPACASFDMFPNFEIRGNKFKEI 454

Length = 458

>gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  168 bits (427), Expect = 2e-47
 Identities = 115/391 (29%), Positives = 153/391 (39%), Gaps = 85/391 (21%)

Query: 44  KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
             +A+TGTNGKST    +  +L   G +  +GGN+G  +       + L       +V V
Sbjct: 115 PFIAITGTNGKSTTTALIAHILREAGRDVQMGGNIGTAV-------LTLEPPPAG-RVYV 166

Query: 104 VEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
           +E+SSYQ++  P+    P V V+LNLTPDHL+RH TM+ YA  K  LF+           
Sbjct: 167 LELSSYQIDLAPS--LDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFA---GQGPDTAV 221

Query: 163 FG---------------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
            G                      I   +     + A  G  +D             G+ 
Sbjct: 222 IGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIP 281

Query: 208 SQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTP--PHRMQIVH 263
           S    H        N  NA  A AA   LGL        L S       P   HRM+ V 
Sbjct: 282 SLPGAH--------NAQNAAAAYAAARALGLSPEEIAAGLAS------FPGLAHRMEQVG 327

Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
           R   GV +V+DSKATN +A    L      +   + GG+ K        G E L  P   
Sbjct: 328 R-RGGVLFVNDSKATNADAAAKALSSFD--RIYWIAGGKPK------EGGIESL-APFFP 377

Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFA-----------VANMKDAVNHARRMA----T 368
               I   Y   LI       G +   FA              ++ AV  A   A     
Sbjct: 378 R---IAKAY---LI-------GEAAEAFAATLGGAVPFEICGTLERAVAAAAADAAADGA 424

Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
               ++LSP CASFD+F+NFE RG  F+EL 
Sbjct: 425 PEPVVLLSPACASFDQFKNFEVRGDAFRELV 455

Length = 460

>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  157 bits (399), Expect = 1e-43
 Identities = 121/394 (30%), Positives = 173/394 (43%), Gaps = 105/394 (26%)

Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G +  VGGN+G P         AL     + ++ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLP---------ALSLLDQECELYVL 157

Query: 105 EVSSYQMEIPNKYFCPTVS------VVLNLTPDHLERH-KTMKNYALTKCHLFSH----M 153
           E+SS+Q+E        T S       +LN+T DH++R+   ++ Y   K  ++ +    +
Sbjct: 158 ELSSFQLET-------TSSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCV 210

Query: 154 VNTKLGL-LPF--------------GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
           VN    L +P               G+ HLN   +G      W+    G K+        
Sbjct: 211 VNADDALTMPIRGADKRCVSFGVNMGDYHLNRQ-QGE----TWLRV-KGEKV-------- 256

Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA-ALS-VLGLDIGVDVEALNSTIEILRT-- 254
                      L    MK+ G+HNY NA  A AL+  +G+          S+++ L T  
Sbjct: 257 -----------LNTKEMKLSGQHNYTNALAALALADAVGIP-------RASSLKALTTFT 298

Query: 255 -PPHRMQIVHRDIQGVTWVDDSKATNL---EATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
             PHR Q+V     GV W++DSKATN+   EA   GL  + G    +LLGG  K      
Sbjct: 299 GLPHRFQLVLEH-NGVRWINDSKATNVGSTEAALNGL-HVDG-TLHLLLGGDGK------ 349

Query: 311 SNGFEKLIEPLNHHRCVI-TFGYSGVLIWKTLVNNGLSIPCFAVA----NMKDAVNHARR 365
           S  F  L   LN     +  FG  G           L+     V+     M+ A+     
Sbjct: 350 SADFSPLARYLNGDNIRLYCFGRDGAQ---------LAALRPEVSQLTETMEQAMRLIAP 400

Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
               GD ++LSP CAS D+F+NFE RG  F  LA
Sbjct: 401 RVQPGDMVLLSPACASLDQFKNFEQRGNEFARLA 434

Length = 438

>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  150 bits (379), Expect = 6e-41
 Identities = 120/408 (29%), Positives = 196/408 (48%), Gaps = 65/408 (15%)

Query: 13  LKATGLACLLQSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
            +   +    Q+G RV+ +++  A ++  R  K++A+TG+NGK+TV + VG +    G++
Sbjct: 79  ERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD 138

Query: 72  AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
             + GN+G P+ EA    +     K    V V+E+SS+Q+E   +   PT + VLN++ D
Sbjct: 139 TVIAGNIGTPVLEAE---LQREGKKA--DVWVLELSSFQLE-NTESLRPTAATVLNISED 192

Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE------AIK--GHR---FNLA 180
           HL+R+  + +YA TK  +F             G Q LN       A+K  G     F+L 
Sbjct: 193 HLDRYDDLLDYAHTKAKIF----RGD------GVQVLNADDAFCRAMKRAGREVKWFSLE 242

Query: 181 -----WIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234
                W+    G +K   E   A+ ++P  G+                 HNAA   ++ +
Sbjct: 243 HEADFWLERETGRLKQGNEDLIATQDIPLQGL-----------------HNAA-NVMAAV 284

Query: 235 GL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG 292
            L   +G+  EAL   ++  +  PHR++ +  +  GV ++DDSK TN+ AT   +  L+ 
Sbjct: 285 ALCEAVGLPREALLEHVKTFQGLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ- 342

Query: 293 HKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCF 351
           +   ++LGG  K   GQ+   F  L + L    + V   G     I + L  +G  +   
Sbjct: 343 NPLFVILGGMGK---GQD---FTPLRDALAGKAKGVFLIGVDAPQIRRDL--DGCGLNLT 394

Query: 352 AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
             A +++AV  A   A  GD ++LSP CASFD F+ + HR  VF E  
Sbjct: 395 DCATLEEAVQRAYAQAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAF 442

Length = 445

>gnl|CDD|235162 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  148 bits (377), Expect = 7e-41
 Identities = 104/388 (26%), Positives = 167/388 (43%), Gaps = 68/388 (17%)

Query: 21  LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHL--GIEAFVGGNL 78
           L+Q  K ++SE D+   V+P SI I   +GTNGK+T      QM  HL     A  GGN+
Sbjct: 70  LIQKAKNLISEYDYFYDVMPFSIWI---SGTNGKTTTT----QMTTHLLEDFGAVSGGNI 122

Query: 79  GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT 138
           G PL+E               ++ V+E SS+ +   NK   P + ++L +TPDHL  H +
Sbjct: 123 GTPLAEL----------DKNAKIWVLETSSFTLHYTNKAK-PNIYLLLPITPDHLSWHGS 171

Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
            +NY   K      M    + +LP   ++                        T+A+   
Sbjct: 172 FENYVKAKLKPLKRMNEGDVAILPKKFKNTP----------------------TKAQKIF 209

Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNA----AVAALSV--LGLDIGVDVEALNS-TIEI 251
           +E          +   +    + N+       A+ AL+V  +  D  +D E LN+  I  
Sbjct: 210 YE----DEEDLAEKFGID-SEKINFKGPFLLDALLALAVYKILFD-ELDYERLNAFKIG- 262

Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
                H+++   RD QG  WVDDSKATN++AT   L   K  K  ++LGG  K ++    
Sbjct: 263 ----KHKLE-EFRDKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGDDKGVD---- 313

Query: 312 NGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
                L E + +    +    S     + L     +I  F    ++ AV   +++    +
Sbjct: 314 --LTPLFEFMKNLNIELYAIGSNTEKIQALAKE-FNIKAFVCEFLEKAVEEIKKVLKQNE 370

Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQELA 399
             +LSP  AS D+F++++ RG  F+   
Sbjct: 371 VALLSPAAASLDQFKSYKERGEKFKAFV 398

Length = 401

>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  149 bits (377), Expect = 3e-40
 Identities = 122/412 (29%), Positives = 183/412 (44%), Gaps = 67/412 (16%)

Query: 18  LACLLQSGKRVMSELDFAAQVIP--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
           LA    +G  V  E++ A ++    R    LAVTGTNGK+T V  +  ML   G+ A   
Sbjct: 95  LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAV 154

Query: 76  GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS----VVLNLTPD 131
           GN+G P+ +A             + V  VE+SS+Q+     ++ P+VS     VLNL PD
Sbjct: 155 GNIGTPVLDAVRD-------PEGYDVLAVELSSFQL-----HWSPSVSPHSAAVLNLAPD 202

Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLL--PFGNQHLNEA--IKGHR---FNLA---- 180
           HL+ H +M+ YA  K  ++       +  +  P     + EA  ++G R   F L     
Sbjct: 203 HLDWHGSMEAYAAAKARIYEGTTVACVYNVADPATEDLVEEADVVEGARAIGFTLGTPGP 262

Query: 181 -WIGAFPGVKID----TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235
             +G   G+ +D     + +T++ E+  +  +        +    HN  NA  AA   L 
Sbjct: 263 SQLGVVDGILVDRAFVEDRQTSALELATLEDL--------RPAAPHNIANALAAA--ALA 312

Query: 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC 295
              GV   A+   +   R   HR++ V  D  GVTWVDDSKATN  A       L  +  
Sbjct: 313 RSFGVPPAAVRDGLRAFRPDAHRIEHVA-DADGVTWVDDSKATNPHAAAA---SLAAYPS 368

Query: 296 VILL-GGQAKVLNGQESNGFEKLI----EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPC 350
           V+ + GG AK   G +   F+ L+      L   R V+  G     I + L  +   +P 
Sbjct: 369 VVWIAGGLAK---GAD---FDDLVRRAAGRL---RGVVLIGADRAEIAEALARHAPDVPV 419

Query: 351 FAVAN-----MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
             V       M +AV  A ++A  GD ++L+P  AS D F ++  RG  F  
Sbjct: 420 VEVDRTDTGAMDEAVAAAAKLARPGDTVLLAPAAASMDMFTDYAARGDAFAA 471

Length = 480

>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  141 bits (356), Expect = 1e-37
 Identities = 101/372 (27%), Positives = 177/372 (47%), Gaps = 43/372 (11%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
           +++K +A+TGTNGKST    +  +LN  G++  V GN+G P  +A        +SK  + 
Sbjct: 102 KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALQAK-------ASKDGY- 153

Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
             V+E+SS+Q+++  K F   ++V+LN+TPDHL+RH+ M  Y   K  +F  M      +
Sbjct: 154 --VLELSSFQLDLV-KTFTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAV 210

Query: 161 LPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH--- 213
           +   N +  E      +  R  L     F   KI     +   +  +      +      
Sbjct: 211 INIDNDYCREIFIKLQQEQRIKLI---PFSVTKILENGISVVDDKISDNFFDDISFKLPF 267

Query: 214 NMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTW 271
           N  + G+HN  N  A+ A   ++G++    +E+++S     ++ PHRMQ +   I  +++
Sbjct: 268 NKNLQGKHNCENIAASYAVAKIIGVEPKKILESISS----FQSLPHRMQYIGS-INNISF 322

Query: 272 VDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFG 331
            +DSKATN  +    +  L       L GG  K        G E++    +  +    +G
Sbjct: 323 YNDSKATNAISAVQSIKALD--NIYWLAGGIPK------EGGIEEIKPYFSKIKKAYFYG 374

Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA----IVLSPGCASFDEFRN 387
            +  +   T  N    +      N++ A + A + A   +A    I+L+P C+S+D+F+N
Sbjct: 375 QAKEIFANTAKN---IVDFVICDNLEQAFDLAYKDAVGDNAEVKNILLAPSCSSYDQFKN 431

Query: 388 FEHRGMVFQELA 399
           FE RG +F +L+
Sbjct: 432 FEERGELFIKLS 443

Length = 454

>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  139 bits (352), Expect = 5e-37
 Identities = 110/395 (27%), Positives = 181/395 (45%), Gaps = 66/395 (16%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
           L +G  V+ +++  A  + + +  +A+TG+NGKSTV    G M    G++  VGGN+G P
Sbjct: 89  LAAGIPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVP 146

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
                    AL   +   ++ V+E+SS+Q+E  +       +  LNL+ DH++R++ M++
Sbjct: 147 ---------ALDLLEQDAELYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMED 196

Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
           Y   K  +F H    +L ++   ++                  +P    + +  T  F+ 
Sbjct: 197 YRQAKLRIFDH---AELAVVNRDDKQ----------------TYPDHA-ELQLVTFGFDQ 236

Query: 202 PAVGVVSQ-----LQLHNMKVM--------GRHNYHNAAVAALSVLGLDIGVDVEALNST 248
              G+        L  +   V+        GRHN  N     L VL L     V+     
Sbjct: 237 QDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVAN----VLVVLALLDAAGVD-YRKA 291

Query: 249 IEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAK 304
           ++ L++     HR Q+V  D  G+ WV+DSKATN+ +T   L  L+   K  +L+GG  K
Sbjct: 292 LDALKSYTGLTHRCQVV-ADNHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGK 350

Query: 305 VLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
              G + +  + ++  LN   C   FG  G   +  L  +           M+DA+    
Sbjct: 351 ---GADFSPLKPVLATLNLQLCC--FGEDGDQ-FMPLHPSARRF-----DTMEDAIESIS 399

Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
               +GD ++LSP CASFD+F+NF  RG  F +LA
Sbjct: 400 PQLKSGDMVMLSPACASFDQFKNFMARGDAFAQLA 434

Length = 438

>gnl|CDD|179086 PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  138 bits (348), Expect = 1e-36
 Identities = 101/360 (28%), Positives = 162/360 (45%), Gaps = 61/360 (16%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
           L +TG+ GK+T + F+  +L  LGI AF  GN+G P+ +                V VVE
Sbjct: 105 LGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIPILDGMQQP----------GVRVVE 154

Query: 106 VSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
           +SS+Q+ +    Y   +  ++LN++ +HL+ H  +  Y   K ++   + N         
Sbjct: 155 ISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLRNPDD------ 208

Query: 165 NQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
                           W+G     G       +     +     +  L LH+     R+N
Sbjct: 209 ---------------LWVGDERSYGHSYLEYVQEIMRLLDKGSALKPLYLHD-----RYN 248

Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATN 279
           Y  A   A  V  +       +  S +E + T   PPHRM+ +     GV +++DSKAT 
Sbjct: 249 YCAAYALANEVFPI-------SEESFLEAVATFEKPPHRMEYLGEK-DGVHYINDSKATT 300

Query: 280 LEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIW 338
           + A    L+ +     VIL GG+ K       + F  L+  L    + V+  G     I 
Sbjct: 301 VSAVEKALLAVGNQVIVIL-GGRNK-----GCD-FSSLLPVLRQTAKHVVAMGECRQEIA 353

Query: 339 KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
           + L       P   V ++++AV+ A+ +A  GD I+LSPGCASFD+FR+FE RG +F++L
Sbjct: 354 QALSE---KFPLTVVKDLQEAVSCAQEIAQPGDVILLSPGCASFDQFRSFEERGAMFKQL 410

Length = 418

>gnl|CDD|179872 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  133 bits (337), Expect = 8e-35
 Identities = 102/373 (27%), Positives = 157/373 (42%), Gaps = 53/373 (14%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
           + VTGT GKST    +  +L   G    + GN+G PL E       + + +P  +   +E
Sbjct: 118 VCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIGVPLLE-------VLAPQPAPEYWAIE 170

Query: 106 VSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH------MVNTKL 158
           +SSYQ  ++      P ++VVLNL P+HL+ H     Y   K  L +       ++N   
Sbjct: 171 LSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRPRIALLNAAD 230

Query: 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA----KTASFEVPAVGVVSQLQLHN 214
             L      L ++       + W     G  +  +     + A F+   V +        
Sbjct: 231 PRL--AALQLPDS------EVVWFNHPDGWHVRGDVVYRGEQALFDTALVPLP------- 275

Query: 215 MKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ-IVHRDIQGVTW 271
               GRHN  N  A +AAL  L    G+D  AL       R  P+R+Q +  RD  G+T+
Sbjct: 276 ----GRHNRGNLCAVLAALEAL----GLDAVALAPAAAGFRPLPNRLQELGSRD--GITY 325

Query: 272 VDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFG 331
           V+DS +T   A+   L    G +  +L+GG  + L+  +         PL     ++T G
Sbjct: 326 VNDSISTTPHASLAALDCFAGRRVALLVGGHDRGLDWTDFAAHMAQRAPLE----IVTMG 381

Query: 332 YSGVLIWKTLVN--NGLSIPCFAVANMKDAVNHARRMAT-NGDAIVLSPGCASFDEFRNF 388
            +G  I   L            A  ++  AV  AR      G  ++LSPG  SF  +R++
Sbjct: 382 ANGPRIHALLAPLAAAGRFGLHAADDLAHAVRLARTALGAQGGVVLLSPGAPSFGAYRDY 441

Query: 389 EHRGMVFQELAFF 401
             RG  F +LA F
Sbjct: 442 VARGRHFAQLAGF 454

Length = 468

>gnl|CDD|234662 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  129 bits (326), Expect = 3e-33
 Identities = 105/389 (26%), Positives = 164/389 (42%), Gaps = 68/389 (17%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
           LAVTGTNGK+T    +  M+   G  A   GN+G P+S A         ++P+  V V E
Sbjct: 124 LAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNIGVPVSAAL-------VAQPRIDVLVAE 176

Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
           +SS+Q+   +    P V VVLNL  DH++ H +M++YA  K    + ++   + ++   +
Sbjct: 177 LSSFQLHW-SPTLTPDVGVVLNLAEDHIDWHGSMRDYAADK----AKVLRGPVAVIGADD 231

Query: 166 QHL------NEAIKGHRFNLA-----WIGAFPGVKIDTE---------AKTASFEVPAVG 205
           +++       +      F +       +G   G  +D           A+  S   PA G
Sbjct: 232 EYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPA-G 290

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
           V+  L               AA A     G+       AL S+ E+     HR Q+V   
Sbjct: 291 VLDAL---------------AAAAVARSQGVAPEAIARAL-SSFEV---AGHRGQVVAEH 331

Query: 266 IQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAKVLNGQESNGFEKLIEPLNHH 324
             GVTW+D+SKATN  A       L GH+ V+ + GGQ   L G + +   +   P    
Sbjct: 332 -GGVTWIDNSKATNPHAADAA---LAGHESVVWVAGGQ---LKGADIDDLIRTHAP--RI 382

Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVAN------MKDAVNHARRMATNGDAIVLSPG 378
           +  +  G     I   L  +    P     +      M++AV+ A  +A  GD ++L+P 
Sbjct: 383 KAAVVLGVDRAEIVAALAEHAPDAPVTVTDSTDPEEAMEEAVSAAVSLAEPGDTVLLAPA 442

Query: 379 CASFDEFRNFEHRGMVFQELAFFSKHDTK 407
            AS D +     RG +F E A  +     
Sbjct: 443 AASLDMYTGMGQRGDLFAEAARRTIRGLT 471

Length = 473

>gnl|CDD|219763 pfam08245, Mur_ligase_M, Mur ligase middle domain

 Score =  107 bits (270), Expect = 9e-28
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 31/192 (16%)

Query: 49  TGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS-----KPKFQVAV 103
           TGTNGK+T    +  +L+  G     GGN  N         I LP       K     AV
Sbjct: 1   TGTNGKTTTTELIAAILSAAGGVVGTGGNTNNA--------IGLPLLLALMPKKGADYAV 52

Query: 104 VEVSSYQMEIPNKYFC--PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161
           +E+SS+ +          P ++V+ N++PDHL+ H TM+NYA  K  +F  +    + ++
Sbjct: 53  LELSSFGLGEGRLEGLAKPDIAVITNISPDHLDYHGTMENYAAAKAEIFEGLPEDGIAVI 112

Query: 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK---TASFEVPAVGVVSQLQLH----- 213
              +  L + +K     +   G      ++ EA     A+  V + G    L        
Sbjct: 113 NADDPELAKRLKNAGAKVITFG------LENEADDLRAANIYVSSEGGEIVLFTVPGGEL 166

Query: 214 --NMKVMGRHNY 223
             ++ + GRHN 
Sbjct: 167 EISLPLPGRHNV 178

Length = 178

>gnl|CDD|179571 PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  104 bits (261), Expect = 2e-24
 Identities = 115/403 (28%), Positives = 162/403 (40%), Gaps = 86/403 (21%)

Query: 40  PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKF 99
           PR  + L VTGTNGK+T  + +  ML   G  + + GN+G+P+         L       
Sbjct: 116 PR--RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNIGSPV---------LDVLDEPA 164

Query: 100 QVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL 158
           ++  VE+SS+Q+   P+    P    VLN+  DHL+ H TM  YA  K    +  V   +
Sbjct: 165 ELLAVELSSFQLHWAPS--LRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALTGRVAV-V 221

Query: 159 GL-LPFGNQHLNEAIK----GHRFNLAWIGAF---PGVKID-------TEAKTASFEVPA 203
           GL        L+ A      G R      G      G  +D         A  AS  VP 
Sbjct: 222 GLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLRLAPVASIPVPG 281

Query: 204 -VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
            VGV+  L                A AAL+     +GV   A+   +   R   HR ++V
Sbjct: 282 PVGVLDAL----------------AAAALA---RAVGVPAGAIADALASFRVGRHRAEVV 322

Query: 263 HRDIQGVTWVDDSKATNLEAT-------------CTGLMDLKG---HKCVILLGGQ--AK 304
                G+T+VDDSKATN  A                GL  LKG      V  +  +    
Sbjct: 323 AV-ADGITYVDDSKATNPHAARASILAYPRVVWIAGGL--LKGASVDALVAEMASRLVGA 379

Query: 305 VLNGQESNGFEKLIEPLNHHR------CVITFGYSGVL-IWKTLVNNGLSI-----PCFA 352
           VL G++      + E L+ H        V+T   +G+    +  V     +         
Sbjct: 380 VLIGRDR---AVVAEALSRHAPDVPVVQVVTGEDAGMPATPEVPVACVTDVADDDGETLG 436

Query: 353 VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
            A M  AV  ARR+A  GD ++L+P  ASFD+F  +  RG  F
Sbjct: 437 DAVMAAAVAAARRLARPGDTVLLAPAGASFDQFTGYGDRGDAF 479

Length = 488

>gnl|CDD|223841 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 30/276 (10%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS----KP 97
           + K++A+TG+NGK+T    +  +L+  G      GN  N         I LP +      
Sbjct: 102 NAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNE--------IGLPLTLLRLPA 153

Query: 98  KFQVAVVEVS-SYQMEIPN--KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV 154
             + AV+E+  ++  EI    +   P ++V+ N+   HLE   + +  A  K  + + + 
Sbjct: 154 DTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLR 213

Query: 155 NTKLGLLPFGNQHL-NEAIKG-----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVS 208
              + +L   N  L N A K        F L   G F    I  + + +SF +   G  +
Sbjct: 214 PEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEA 273

Query: 209 QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268
           + +L    + GRHN  NA  AA   L L++G+D+E + + ++ L+    R++++     G
Sbjct: 274 EFEL---PLPGRHNVTNALAAAA--LALELGLDLEEIAAGLKELKPVKGRLEVILLAN-G 327

Query: 269 VTWVDDSKATNLEATCTG---LMDLKGHKCVILLGG 301
            T +DDS   N ++       L  L G K + +LG 
Sbjct: 328 KTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGD 363

Length = 451

>gnl|CDD|234660 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional

 Score = 92.1 bits (230), Expect = 2e-20
 Identities = 66/274 (24%), Positives = 105/274 (38%), Gaps = 48/274 (17%)

Query: 26  KRVMSELDFAAQV---IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN-- 80
           ++ ++ L  AA         +K++ VTGTNGK+T    + Q+L  LG +  + G LGN  
Sbjct: 77  RKALALL--AAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGI 134

Query: 81  -----------PLSEAAFHCIALPSSKPKFQVAVVEVSS--------YQMEIPNKYFCPT 121
                      P +      +A          A +EVSS          ++         
Sbjct: 135 GGELIPSGLTTPDALDLQRLLAELVDA-GVTYAAMEVSSHALDQGRVDGLKF-------D 186

Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLN-EAIKGHRFN-L 179
           V+V  NL+ DHL+ H TM++Y   K  LFS +    +         +N +   G R   L
Sbjct: 187 VAVFTNLSRDHLDYHGTMEDYLAAKARLFSELGLAAV---------INADDEVGRRLLAL 237

Query: 180 AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239
               A      D  A    +           ++    ++GR N  N   A  ++L L  G
Sbjct: 238 PDAYAVSMAGADLRATDVEYTDSGQTFTLVTEVE-SPLIGRFNVSNLLAALAALLAL--G 294

Query: 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
           V +E   + +  L+  P RM+ V      +  VD
Sbjct: 295 VPLEDALAALAKLQGVPGRMERVDAGQGPLVIVD 328

Length = 460

>gnl|CDD|233265 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 36/254 (14%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLG--------IEAFVGGN--LGNPLSEAAFHCI 90
           + +K++ VTGTNGK+T  + + Q+L  LG        I   +GGN  + NP +      +
Sbjct: 83  KKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEAL 142

Query: 91  ALPSSKPKF-----QVAVVEVSSYQMEIPNKYFCPTVSVVL-NLTPDHLERHKTMKNYAL 144
            L S+  +      Q AV+EVSS+ +           + V  NL+ DHL+ H TM+NY  
Sbjct: 143 TLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRGVRFDAAVFTNLSRDHLDFHGTMENYFA 202

Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK--------- 195
            K  LF     T+LGL  F   +L++   G +F            I   A          
Sbjct: 203 AKASLF-----TELGLKRFAVINLDDEY-GAQFVKRLPKDITVSAITQPADGRAQDIKIT 256

Query: 196 --TASFEVPAVGVVSQLQLHNMKV--MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
               SFE       +     ++    +GR N +N   A  ++L L  G+D+E + + +E 
Sbjct: 257 DSGYSFEGQQFTFETPAGEGHLHTPLIGRFNVYNLLAALATLLHL-GGIDLEDIVAALEK 315

Query: 252 LRTPPHRMQIVHRD 265
            R  P RM++V   
Sbjct: 316 FRGVPGRMELVDGG 329

Most members of this family are EC 6.3.2.13, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase. An exception is Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is EC 6.3.2.7. The Mycobacteria, part of the closest neighboring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 464

>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 40/252 (15%)

Query: 43  IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIAL--PSS----- 95
           +K++ VTGTNGK+T  + + Q+L  LG +  + G  G+ LS        L  P +     
Sbjct: 91  LKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQN 150

Query: 96  ------KPKFQVAVVEVSSYQMEIPNKYFCP-TVSVVLNLTPDHLERHKTMKNYALTKCH 148
                     ++AV+EVSS+ +           V V  NL+ DHL+ H TM+ Y   K  
Sbjct: 151 LLRDLLDRGAEIAVMEVSSHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAV 210

Query: 149 LFSHMVNTKLGLL----PFGNQHLNEA-----------IKGHRFNLAWIGAFPGVKIDTE 193
           LF  + ++   ++      G  +                   R +L + G      I+  
Sbjct: 211 LFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYGCDFKRPDLDYRG------IEES 264

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           +  + F     G + +     + + G  N +NA  A  + L L  GVD+E + + +E L+
Sbjct: 265 SSGSDFVFEPSGGIGEY---ELPLPGLFNVYNALAAVAAALAL--GVDLEDILAGLETLK 319

Query: 254 TPPHRMQIVHRD 265
             P RM++V+  
Sbjct: 320 PVPGRMELVNIG 331

Length = 475

>gnl|CDD|233291 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

 Score = 84.6 bits (210), Expect = 7e-18
 Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 46/268 (17%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN----PLSEAAFHCIALPSSKP 97
           S K++ +TG++GK+T    +  +L+H        GN  N    PL+        L  +  
Sbjct: 73  SGKVIGITGSSGKTTTKEMLAAILSHKYKVVATPGNFNNEIGLPLT--------LLRAPG 124

Query: 98  KFQVAVVEVS-SYQMEIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152
               AV+E+  S+  EI   Y      P ++V+ N+ P HLE   +++  A  K  +   
Sbjct: 125 DHDYAVLEMGASHPGEI--AYLAEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQG 182

Query: 153 MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT------EAKTASFEVPAVGV 206
           +    + ++   +    +          +    P   I +      + + A     A+G 
Sbjct: 183 LKENGIAVINADDPAFLD----------FAKRLPNRNILSFGFEGGDFRAADISYSALGS 232

Query: 207 VS-QLQLHNMK------VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
            S  L     +      ++GRHN  NA  AA   L L++G+ +E +   +  L+    R 
Sbjct: 233 TSFTLVTPGGEFEVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEGLAELKLVKGRF 290

Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGL 287
           +I  R   G+T +DD+   N ++    L
Sbjct: 291 EIQTR--NGLTLIDDTYNANPDSMRAAL 316

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 417

>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional

 Score = 79.4 bits (196), Expect = 7e-16
 Identities = 66/253 (26%), Positives = 93/253 (36%), Gaps = 49/253 (19%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKP---- 97
            + ++AVTGTNGK++    + Q+L  LG      G LG  L       I    + P    
Sbjct: 111 QLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDG---RLIPGSLTTPDAII 167

Query: 98  -----------KFQVAVVEVSSYQMEIPNKYFCPTVSVVL--NLTPDHLERHKTMKNYAL 144
                            +E SS+ +E   +     ++V    NLT DHL+ H TM++Y  
Sbjct: 168 LHRILARMRAAGADAVAMEASSHGLEQ-GRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEE 226

Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA------WIGAFPG-VKIDTEAKTA 197
            K  LFS        L   G   +N         LA       +G  P     D +A   
Sbjct: 227 AKAALFSK-------LPGLGAAVINADDPAAARLLAALPRGLKVGYSPQNAGADVQA--R 277

Query: 198 SFEVPAVGVVSQLQLHN------MKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTI 249
                A G V  L   +       +++GR N  N     AAL  LGL +     AL    
Sbjct: 278 DLRATAHGQVFTLATPDGSYQLVTRLLGRFNVSNLLLVAAALKKLGLPLAQIARAL---- 333

Query: 250 EILRTPPHRMQIV 262
             +   P RM+ V
Sbjct: 334 AAVSPVPGRMERV 346

Length = 958

>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 60/285 (21%), Positives = 104/285 (36%), Gaps = 42/285 (14%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV---GGNLGN----PLSEAAFHCIALPS 94
           S+ ++A+TG+NGK+T    +  +L     E  V    GN  N    PL+        L  
Sbjct: 602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLT--------LLR 653

Query: 95  SKPKFQVAVVEV---SSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151
            + + + AV E+      ++        PTV++V N   +H E   +++  A  K  + +
Sbjct: 654 LRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIA 713

Query: 152 HMVNTKLGLLPFGNQHLNEAIKGH------RFNLAWIGAFPGVKIDT-----EAKTASFE 200
            +    + ++   + +     K        RF L         KI       EA     +
Sbjct: 714 ALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQ 773

Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
           V      +++ L    ++G HN  N  AA+A     G  +      L       +    R
Sbjct: 774 VVTPAGSAEVYL---PLIGEHNLRNALAAIACALAAGASLKQIRAGLER----FQPVAGR 826

Query: 259 MQIVHRDIQGVTWVDDSKATN---LEATCTGLMDLKGHKCVILLG 300
           MQ       G   +DD+   N   + A    L +L      ++LG
Sbjct: 827 MQRRRLS-CGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLG 870

Length = 958

>gnl|CDD|130153 TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 78/276 (28%), Positives = 119/276 (43%), Gaps = 49/276 (17%)

Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEAAFHCIALPSSKPKFQVA 102
           +LAV GT+GK+T  + +  +L   G++    +GG  GN      F   A     P F   
Sbjct: 104 VLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGN------FGVSARLGESPFF--- 154

Query: 103 VVEVSSYQMEIPNK-----YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157
           V+E   Y     +K     ++ P   V+ NL  DH +    +K  A+ +   F H+V T 
Sbjct: 155 VIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLK--AIQR--QFHHLVRTV 210

Query: 158 LG----LLPFGNQHLNEAI-KGHRFNLAWIGA---FPGVKIDTEAKTASFEV----PAVG 205
            G    L P  +Q L + + KG      + G    +   KI  +   + F+V      VG
Sbjct: 211 PGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADG--SHFDVLLDGEKVG 268

Query: 206 VVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
            V         ++GRHN HNA  A+AA   +G+ I    EAL S +   R    R+++  
Sbjct: 269 EV------KWSLVGRHNMHNALMAIAAARHVGVAIEDACEALGSFVNAKR----RLEL-K 317

Query: 264 RDIQGVTWVDD--SKATNLEATCTGLMDLKGHKCVI 297
            +  G+T  DD     T +EAT  GL    G   ++
Sbjct: 318 GEANGITVYDDFAHHPTAIEATLQGLRQKVGGARIL 353

Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 448

>gnl|CDD|223844 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 52/251 (20%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +AV GT+GK+T  + +  +L   G++    +GG L N  + A      L S    F   V
Sbjct: 110 IAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKNFGTNAR-----LGSGDY-F---V 160

Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
            E           ++ P V++V N+  DHL+ +  ++         F H V      +PF
Sbjct: 161 AEADESDSSF--LHYNPRVAIVTNIEFDHLDYYGDLEAIK----QAFHHFVRN----VPF 210

Query: 164 GN--------QHLNEAIKG------HRFNLAWIGAFPGVKIDTEAKTASFEV----PAVG 205
                      +L E +          +       +    I  +    +F+V      +G
Sbjct: 211 YGRAVVCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELG 270

Query: 206 VVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
            V       + + GRHN  NA  A+A    LG+D     EAL S   + R    R ++  
Sbjct: 271 EV------KLPLPGRHNVLNALAAIAVARELGIDPEAIAEALASFQGVKR----RFELK- 319

Query: 264 RDIQGVTWVDD 274
            ++ GVT +DD
Sbjct: 320 GEVNGVTVIDD 330

Length = 459

>gnl|CDD|237588 PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 70/263 (26%), Positives = 107/263 (40%), Gaps = 46/263 (17%)

Query: 26  KRVMSELDFAAQVIPR-SIKILAVTGTNGKSTVVTFVGQMLNHLGI-------------E 71
           K+ MS +       P+  +K+LA TGT GK+T   F   +L  L               E
Sbjct: 92  KKAMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGE 151

Query: 72  AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY---FCPTVSVVLNL 128
            F    L  P S   F  +A  +        ++EVSS    +   Y   F   V V LN+
Sbjct: 152 TFFKSALTTPESLDLFKMMA-EAVDNGMTHLIMEVSSQAYLVGRVYGLTF--DVGVFLNI 208

Query: 129 TPDHLE--RHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE-----AIKGHRFNLAW 181
           TPDH+    H T ++Y   K  L     N+K  ++     H +E       + H F    
Sbjct: 209 TPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTPQEHDF---- 261

Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH-NMKVMGRHNYHNAAVAALSVLGLDIGV 240
            G     +I   +   SFE        +L    +++++G+ N  NA  A L+ L L  G 
Sbjct: 262 YGIDSENQI-MASNAFSFEATG-----KLAGTYDIQLIGKFNQENAMAAGLACLRL--GA 313

Query: 241 DVEALNSTIEILRTP-PHRMQIV 262
            +E +   I   +TP P RM+++
Sbjct: 314 SLEDIQKGIA--QTPVPGRMEVL 334

Length = 481

>gnl|CDD|233264 TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 50/240 (20%), Positives = 92/240 (38%), Gaps = 29/240 (12%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +AV GT+GK+T    +  +L   G++    VGG +       A     L S +      V
Sbjct: 102 IAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVK-----EAGTNARLGSGEY----LV 152

Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLP 162
            E         +    P V++V N+ PDHL+ +  + +           ++    L ++ 
Sbjct: 153 AEADESDASFLH--LQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAVIC 210

Query: 163 FGNQHLNEAIKGHRFNLAWIGAFPGVK-----IDTEAKTASFEVPAVGVVSQLQLHN--- 214
             +  L E +              G        + +   A  +     V  + +L+    
Sbjct: 211 ADDPVLRELVPK-ATEQVITYGGSGEDADYRAENIQQSGAEGK---FSVRGKGKLYLEFT 266

Query: 215 MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274
           + + GRHN  NA  A    + L++G+D EA+   +   +    R +I+  +  GV  +DD
Sbjct: 267 LNLPGRHNVLNALAAIA--VALELGIDFEAILRALANFQGVKRRFEIL-GEFGGVLLIDD 323

This model describes the MurC protein in bacterial peptidoglycan (murein) biosynthesis. In a few species (Mycobacterium leprae, the Chlamydia), the amino acid may be L-serine or glycine instead of L-alanine. A related protein, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase (murein tripeptide ligase) is described by model TIGR01081 [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 448

>gnl|CDD|234757 PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional

 Score = 45.9 bits (110), Expect = 2e-05
 Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 48/220 (21%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +AV GT+GK+T  + +  +L   G++    +GG L    + A      L +S       V
Sbjct: 110 IAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAAGTNA-----RLGNSD----YFV 160

Query: 104 VEV----SSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159
            E      S+      K   P +++V N+  DHL+ +   ++        F    +    
Sbjct: 161 AEADESDRSF-----LKLH-PDIAIVTNIDADHLDYYGDFEDLKDA----FQEFAH---- 206

Query: 160 LLPFG--------NQHLNEAIKGHRFNLAWIG-----AFPGVKIDTEAKTASFEVPAVG- 205
            LPF         +  L E +      +   G      F    I  +     F+V   G 
Sbjct: 207 NLPFYGALVACGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGE 266

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
           V+    L    + GRHN  N A+AA++V  L++G+D EA+
Sbjct: 267 VLGDFTLP---LPGRHNVLN-ALAAIAV-ALELGIDDEAI 301

Length = 461

>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 30/247 (12%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AFVGGNLGN 80
              G R++   +  A+++   I IL V+G++GK+TV + +  +      + ++  G L  
Sbjct: 84  KSRGNRLVHRAELLAELMQEQISIL-VSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQ 142

Query: 81  PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
                    +   S   ++ VA  + S   +    K++ P  SV+ N+  +HL   +  +
Sbjct: 143 -------EGLNGYSGSSEYFVAEADESDGSL----KHYTPEFSVITNIDNEHLSNFEGDR 191

Query: 141 NYALTKCHLFSHMVNTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
              L     F+  V         G+   L   ++GH +  +       +    E   + F
Sbjct: 192 ELLLASIQDFARKVQQINKCFYNGDCPRLKGCLQGHSYGFSSSCDLHILSYYQEGWRSYF 251

Query: 200 EVPAVGVVSQ---LQLHNMKVMGRHNYHNAAVA---ALSVLGLDIGVDVEALNSTIEILR 253
               +GVV Q   L L     +G HN  NAA A   AL+ LG+D G    AL     + R
Sbjct: 252 SAKFLGVVYQDIELNL-----VGMHNVANAAAAMGIALT-LGIDEGAIRNALKGFSGVQR 305

Query: 254 TPPHRMQ 260
               R++
Sbjct: 306 ----RLE 308

Length = 809

>gnl|CDD|237026 PRK11930, PRK11930, putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 43/131 (32%)

Query: 43  IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV--------GGNLGNPLS----------- 83
           I ++ +TG+NGK    T V + L  L    +            +G PLS           
Sbjct: 107 IPVIGITGSNGK----TIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQLNEEHELG 162

Query: 84  --EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
             EA         S+P            +ME   K   PT+ ++ N+   H E  +++K 
Sbjct: 163 IFEAGI-------SQPG-----------EMEALQKIIKPTIGILTNIGGAHQENFRSIKQ 204

Query: 142 YALTKCHLFSH 152
             + K  LF  
Sbjct: 205 KIMEKLKLFKD 215

Length = 822

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	407
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	100.0
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	100.0
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK10773	453	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	100.0
COG0770	451	MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce	100.0
COG0773	459	MurC UDP-N-acetylmuramate-alanine ligase [Cell env	100.0
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
TIGR01143	417	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	100.0
PRK14093	479	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop	100.0
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	100.0
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	100.0
TIGR01081	448	mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl	100.0
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	100.0
PRK11930	822	putative bifunctional UDP-N-acetylmuramoyl-tripept	100.0
PRK00139	460	murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d	100.0
TIGR01085	464	murE UDP-N-acetylmuramyl-tripeptide synthetase. A	100.0
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	100.0
PRK14022	481	UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l	100.0
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	100.0
TIGR01499	397	folC folylpolyglutamate synthase/dihydrofolate syn	100.0
COG0769	475	MurE UDP-N-acetylmuramyl tripeptide synthase [Cell	100.0
TIGR02068	864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	100.0
COG0285	427	FolC Folylpolyglutamate synthase [Coenzyme metabol	100.0
PRK10846	416	bifunctional folylpolyglutamate synthase/ dihydrof	100.0
PLN02913	510	dihydrofolate synthetase	100.0
PLN02881	530	tetrahydrofolylpolyglutamate synthase	100.0
PRK14016	727	cyanophycin synthetase; Provisional	99.97
PF08245	188	Mur_ligase_M: Mur ligase middle domain; InterPro:	99.97
KOG2525	496	consensus Folylpolyglutamate synthase [Coenzyme tr	99.97
PF02875	91	Mur_ligase_C: Mur ligase family, glutamate ligase	99.27
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.92
PF08353	113	DUF1727: Domain of unknown function (DUF1727); Int	94.89
PRK09435	332	membrane ATPase/protein kinase; Provisional	92.39
PRK15453	290	phosphoribulokinase; Provisional	91.06
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	90.87
TIGR03172	232	probable selenium-dependent hydroxylase accessory	90.42
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	90.3
cd02040	270	NifH NifH gene encodes component II (iron protein)	89.83
cd02117	212	NifH_like This family contains the NifH (iron prot	88.31
PRK13232	273	nifH nitrogenase reductase; Reviewed	88.05
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	87.08
PRK13235	274	nifH nitrogenase reductase; Reviewed	86.99
COG0132	223	BioD Dethiobiotin synthetase [Coenzyme metabolism]	86.92
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	86.75
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	86.66
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	86.61
PRK13849	231	putative crown gall tumor protein VirC1; Provision	86.61
PRK10037	250	cell division protein; Provisional	86.54
COG2403	449	Predicted GTPase [General function prediction only	86.38
PRK13869	405	plasmid-partitioning protein RepA; Provisional	86.17
COG2894	272	MinD Septum formation inhibitor-activating ATPase	86.11
PRK13230	279	nitrogenase reductase-like protein; Reviewed	86.09
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	86.08
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	86.03
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	85.75
PHA02519	387	plasmid partition protein SopA; Reviewed	85.73
PHA02518	211	ParA-like protein; Provisional	85.72
PRK13705	388	plasmid-partitioning protein SopA; Provisional	85.26
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	85.07
cd02032	267	Bchl_like This family of proteins contains bchL an	84.63
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	84.62
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	84.14
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	83.62
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	83.53
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	83.12
PRK13234	295	nifH nitrogenase reductase; Reviewed	82.97
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	82.48
cd03116	159	MobB Molybdenum is an essential trace element in t	82.28
COG4240	300	Predicted kinase [General function prediction only	82.23
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	81.98
PRK11670	369	antiporter inner membrane protein; Provisional	81.72
PRK13231	264	nitrogenase reductase-like protein; Reviewed	81.58
COG0769	475	MurE UDP-N-acetylmuramyl tripeptide synthase [Cell	81.48
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	81.11
TIGR01287	275	nifH nitrogenase iron protein. This model describe	81.03
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	80.96
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	80.75
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	80.74
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	80.62
COG3367	339	Uncharacterized conserved protein [Function unknow	80.22
PRK13233	275	nifH nitrogenase reductase; Reviewed	80.22
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	80.02

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=100.00  E-value=1.7e-65  Score=511.29  Aligned_cols=367  Identities=27%  Similarity=0.488  Sum_probs=307.1

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~   83 (407)
                      +||+||+++++||++++|++.|+|++++++++++.+  +.++|+||||||||||++||+++|+..|.++..+||+|.|..
T Consensus        65 ~vv~sp~i~~~~p~~~~a~~~~i~i~~~~e~~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~~~  142 (433)
T TIGR01087        65 LVVKSPGIPPDHPLVQAAAKRGIPVVGDIELFLRLV--PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTPAL  142 (433)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHHHH
Confidence            699999999999999999999999999999999887  568999999999999999999999999999999999999854


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (407)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~  163 (407)
                      ....        ..+.+++|+|+|+++++.+.. ++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.
T Consensus       143 ~~~~--------~~~~~~~V~E~~~~~l~~~~~-~~p~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~n~  213 (433)
T TIGR01087       143 EVLD--------QEGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNA  213 (433)
T ss_pred             HHHh--------ccCCCEEEEEcChhHhcCCcc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence            3221        135688999999988886554 7999999999999999999999999999999999888889999999


Q ss_pred             CChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHH
Q 015421          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE  243 (407)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~  243 (407)
                      ||+.+..+......++++|+.......       .+.....+..+....+.++++|.||++|+++|+  +++..+|++++
T Consensus       214 dd~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~~~  284 (433)
T TIGR01087       214 DDPRFARLAQKSKAQVIWFSVEKDAER-------GLCIRDGGLYLKPNDLEGSLLGLHNAENILAAI--ALAKSLGLNLE  284 (433)
T ss_pred             CCHHHHHhhhhcCceEEEEeCCccCCC-------ceEEECCEEEEeccccccCCCcHHHHHHHHHHH--HHHHHcCCCHH
Confidence            999887776655567788875421110       111111111111112468999999999999999  89999999999


Q ss_pred             HHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhccC
Q 015421          244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH  323 (407)
Q Consensus       244 ~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~  323 (407)
                      .|+++|++|++++||||++. ..+++.+|||+++|||+|+.++++.++ +++++|+|++.+.+      .++++.+.+..
T Consensus       285 ~i~~~L~~f~g~~~R~e~v~-~~~g~~~idD~~atn~~a~~~al~~~~-~~ii~I~Gg~~~~~------d~~~~~~~l~~  356 (433)
T TIGR01087       285 AILEALRSFKGLPHRLEYVG-QKNGVHFYNDSKATNVHATLAALSAFD-NPVILIVGGDDKGA------DFSPLAPAAAG  356 (433)
T ss_pred             HHHHHHHhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCC------CHHHHHHHHHh
Confidence            99999999999999999986 357899999988999999999999996 47899999775433      24566666643


Q ss_pred             -ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHh
Q 015421          324 -HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF  400 (407)
Q Consensus       324 -~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~  400 (407)
                       .+.++++|+....+.+.++..+.  .+..++++++|++.+.+.+++||+||++|+|.||++|++|++||+.|.++|+
T Consensus       357 ~~~~v~~~G~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~gdiVLlspa~as~d~f~~~~~RG~~F~~~v~  432 (433)
T TIGR01087       357 KVKAVLAIGEDAAKIAPLLKEAGL--SVYLVESLEEAVQAAREVASPGDVVLLSPACASFDQFKSYEERGEKFKELVR  432 (433)
T ss_pred             hCCEEEEECCCHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHhcCCCCEEEECccchhhccccCHHHHHHHHHHHHh
Confidence             56888999999888888765432  3456789999999999989999999999999999999999999999999986

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.2e-65  Score=511.06  Aligned_cols=372  Identities=27%  Similarity=0.390  Sum_probs=305.2

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~   82 (407)
                      -+||+||.++++||++++|++.++|++++++++++.. ++.++|+||||||||||++||+++|+..|.++.++||+|.|.
T Consensus        65 d~vV~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p~  143 (454)
T PRK01368         65 DKIVLSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKS-KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPA  143 (454)
T ss_pred             CEEEECCCCCCCCHHHHHHHHCCCceecHHHHHHHHh-cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHHH
Confidence            4799999999999999999999999999999998876 456899999999999999999999999999999999999986


Q ss_pred             hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEe
Q 015421           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (407)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n  162 (407)
                      ...          ..+.+++|+|+|+++++.... ++|+++|||||++||+|+|+|+|+|+++|.++++.+++.+.+|+|
T Consensus       144 l~~----------~~~~~~~VlE~ss~ql~~~~~-~~P~iavitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln  212 (454)
T PRK01368        144 LQA----------KASKDGYVLELSSFQLDLVKT-FTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVIN  212 (454)
T ss_pred             hcc----------cCCCCEEEEEcCchhhccccc-cCCCEEEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            432          223478999999999876544 899999999999999999999999999999999988888999999


Q ss_pred             CCChhhHHHHhcc----ccceEEeecCCCc--ccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHH
Q 015421          163 FGNQHLNEAIKGH----RFNLAWIGAFPGV--KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL  236 (407)
Q Consensus       163 ~dd~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~  236 (407)
                      .||+.+..+....    ..++++|+.....  .+........+...... .. ...+.++++|.||++|+++|+  +++.
T Consensus       213 ~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~G~hn~~Na~aAi--a~~~  288 (454)
T PRK01368        213 IDNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDI-SF-KLPFNKNLQGKHNCENIAASY--AVAK  288 (454)
T ss_pred             CCcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCc-ce-EEEecCCCCchhhHHHHHHHH--HHHH
Confidence            9999887765322    2356777753211  00000000001110010 01 112357899999999999999  8899


Q ss_pred             HcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHh
Q 015421          237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK  316 (407)
Q Consensus       237 ~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~  316 (407)
                      .+|++.+.|.++|++|.+++||||++. ..+++.+||||+||||+|+.++++.+.  ++++|+|++. ++.     .++.
T Consensus       289 ~lgi~~~~i~~~L~~F~~~~~Rle~v~-~~~gv~~i~DS~atN~~a~~~al~~~~--~i~lI~Gg~d-k~~-----~~~~  359 (454)
T PRK01368        289 IIGVEPKKILESISSFQSLPHRMQYIG-SINNISFYNDSKATNAISAVQSIKALD--NIYWLAGGIP-KEG-----GIEE  359 (454)
T ss_pred             HcCCCHHHHHHHHHhCCCCCcceEEEE-EECCeEEEECCCCCCHHHHHHHHHhcC--CeEEEecccC-CCC-----CHHH
Confidence            999999999999999999999999996 357899999999999999999999994  6889999873 332     4666


Q ss_pred             hhhhccCccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCC----CEEEEcCCCCCcccccChhhhh
Q 015421          317 LIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG----DAIVLSPGCASFDEFRNFEHRG  392 (407)
Q Consensus       317 ~~~~l~~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~g----d~vL~~~G~~s~~~~~~~~~r~  392 (407)
                      +...+.....+++.|.+++.+.+.+...   ..+..++++++|++.+.+.+++|    |+||++|+|+|||+|++|++||
T Consensus       360 L~~~~~~v~~v~~~g~~~~~l~~~~~~~---~~~~~~~~l~~Av~~a~~~a~~g~~~~d~VLlSPacaSfD~f~~ye~RG  436 (454)
T PRK01368        360 IKPYFSKIKKAYFYGQAKEIFANTAKNI---VDFVICDNLEQAFDLAYKDAVGDNAEVKNILLAPSCSSYDQFKNFEERG  436 (454)
T ss_pred             HHHHHHhhcEEEEECcCHHHHHHHhhcC---CCEEEcCCHHHHHHHHHHHhcCCCCCCCEEEeChhhhccccccCHHHHH
Confidence            7665544667778899999998887542   13556789999999999999998    7999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 015421          393 MVFQELAFFS  402 (407)
Q Consensus       393 ~~~~~~~~~l  402 (407)
                      +.|.++|+.|
T Consensus       437 ~~F~~~v~~~  446 (454)
T PRK01368        437 ELFIKLSQKF  446 (454)
T ss_pred             HHHHHHHHHH
Confidence            9999999976

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.9e-65  Score=495.56  Aligned_cols=371  Identities=29%  Similarity=0.472  Sum_probs=318.4

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~   83 (407)
                      +||.||.++++||.+++|.+.|++++.+.+++++.. ...|+|+||||||||||++|++++|+..|+++..+||+|.|..
T Consensus        72 ~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l  150 (448)
T COG0771          72 LVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPAL  150 (448)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHH
Confidence            799999999999999999999999999999999986 3567999999999999999999999999999999999999998


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (407)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~  163 (407)
                      ....       ...+.|+.|+|+||.+++.... ++|++++||||++||||||+|+|+|..+|.+|+.++.+  ++|+|.
T Consensus       151 ~~~~-------~~~~~d~~VlElSSfQL~~~~~-~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~  220 (448)
T COG0771         151 ELLE-------QAEPADVYVLELSSFQLETTSS-LRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINA  220 (448)
T ss_pred             Hhhc-------ccCCCCEEEEEccccccccCcc-CCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEeC
Confidence            7653       1346788999999999998875 89999999999999999999999999999999997654  999999


Q ss_pred             CChhhHHHHhc-cccceEEeecCCCcc---cccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcC
Q 015421          164 GNQHLNEAIKG-HRFNLAWIGAFPGVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG  239 (407)
Q Consensus       164 dd~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lg  239 (407)
                      ||+++..+... ....+.+|.....+.   +..+...   ..  .+ ........++++|.||++|+++|+  ++|..+|
T Consensus       221 dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~---~~--~~-~~i~~~~~l~l~G~hn~~N~lAa~--a~a~~~g  292 (448)
T COG0771         221 DDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL---VF--KG-EKLLPADELKLPGAHNLENALAAL--ALARALG  292 (448)
T ss_pred             CcHHHhhhhhhcccceeEEEEccccccccceeecchh---cc--cc-ccccchhhcCCcchhhHHHHHHHH--HHHHHcC
Confidence            99999888765 344566666543321   0001000   00  00 111122368999999999999999  9999999


Q ss_pred             CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhh
Q 015421          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE  319 (407)
Q Consensus       240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~  319 (407)
                      ++.+.|.++|++|+++++|||.+. ..+++.+|+||.++|+.|+..||..++ +++++|+|+....++      +..+.+
T Consensus       293 v~~e~i~~~L~~F~gl~HR~e~v~-~~~gv~f~NDSKATN~~At~~AL~~~~-~~v~lI~GG~~Kg~d------f~~L~~  364 (448)
T COG0771         293 VPPEAILEALSSFTGLPHRLEFVG-EKDGVLFINDSKATNVDATLAALSGFD-GPVILIAGGDDKGAD------FSPLAE  364 (448)
T ss_pred             CCHHHHHHHHHhCCCCCcceEEEE-ecCCEEEecCCCCCCHHHHHHHHHcCC-CCEEEEECCCCCCCC------hhHHHH
Confidence            999999999999999999999998 589999999999999999999999998 789999997754433      556777


Q ss_pred             hccC-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHH
Q 015421          320 PLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL  398 (407)
Q Consensus       320 ~l~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~  398 (407)
                      .+++ ...++++|+....+.+.++..++  .+..++++++|++.+.+.+++||+||+.|+|.|||+|++|++||..|.++
T Consensus       365 ~~~~~~~~~~~~G~~~~~i~~~l~~~~~--~~~~~~~le~Av~~a~~~a~~gd~VLLSPacASfDqf~~feeRG~~F~~~  442 (448)
T COG0771         365 ILAKVIKKLVLIGEDAEKIAAALKEAGP--SLVICETLEEAVQLARELAQPGDVVLLSPACASFDQFKNFEERGEEFKEL  442 (448)
T ss_pred             HhhhcceEEEEeCCCHHHHHHHHHhcCC--ceeecCcHHHHHHHHHHhhcCCCeEEEcccccchhhhcCHHHHHHHHHHH
Confidence            7765 45699999999999999987643  36778999999999999999999999999999999999999999999999


Q ss_pred             Hhhhc
Q 015421          399 AFFSK  403 (407)
Q Consensus       399 ~~~l~  403 (407)
                      ++.|.
T Consensus       443 v~~l~  447 (448)
T COG0771         443 VSELG  447 (448)
T ss_pred             HHHhc
Confidence            99875

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=4.2e-65  Score=509.68  Aligned_cols=374  Identities=29%  Similarity=0.470  Sum_probs=304.8

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCC-CCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccc
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR-SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~-~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~   82 (407)
                      +||+||+++++||++++|+++++|+++++++++++... +.++|+||||||||||++||+++|+..|.++.+.||+|.|+
T Consensus        70 ~vv~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~GniG~~~  149 (445)
T PRK04308         70 ILALSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV  149 (445)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCccHHH
Confidence            69999999999999999999999999999999887621 46899999999999999999999999999989999999998


Q ss_pred             hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEe
Q 015421           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (407)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n  162 (407)
                      .......     ...+.|++|+|+|+++++.... ++|+++|||||++||+++|+|+|+|+++|.++++   +++.+|+|
T Consensus       150 ~~~~~~~-----~~~~~d~~VlE~~~~~l~~~~~-~~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~---~~~~~i~n  220 (445)
T PRK04308        150 LEAELQR-----EGKKADVWVLELSSFQLENTES-LRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQVLN  220 (445)
T ss_pred             HHHHHhh-----cCCCCcEEEEEeChHHhCcCcc-cCCCEEEEecCChHHhcccCCHHHHHHHHHHHhc---CCCEEEEe
Confidence            6644210     1235688999999998887654 8999999999999999999999999999999997   46899999


Q ss_pred             CCChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 015421          163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV  242 (407)
Q Consensus       163 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~  242 (407)
                      .||+....+... ..++++|+......+........+...  +.. ......++++|.||++|+++|+  +++..+|+++
T Consensus       221 ~dd~~~~~~~~~-~~~v~~~~~~~~~d~~~~~~~~~~~~~--~~~-~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~~  294 (445)
T PRK04308        221 ADDAFCRAMKRA-GREVKWFSLEHEADFWLERETGRLKQG--NED-LIATQDIPLQGLHNAANVMAAV--ALCEAVGLPR  294 (445)
T ss_pred             CCcHHHHHHhhc-CCcEEEecCCCCCceeEeccCCEEEEc--Cce-eeehhccCCcChhhHHHHHHHH--HHHHHcCCCH
Confidence            999987776543 456777764321111000000112221  111 1122468999999999999999  8899999999


Q ss_pred             HHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhcc
Q 015421          243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN  322 (407)
Q Consensus       243 ~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~  322 (407)
                      +.|.++|++|++++||||++. ..++..+|||||+|||+|+.++++.+. +++++|+|+|.+.++      +.++...+.
T Consensus       295 ~~i~~~L~~f~~~~~R~e~~~-~~~~~~~iDDs~~~n~~s~~~al~~~~-~~~i~IlGg~~~~~~------~~~~~~~l~  366 (445)
T PRK04308        295 EALLEHVKTFQGLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGKGQD------FTPLRDALA  366 (445)
T ss_pred             HHHHHHHhhCCCCCCceEEEE-eeCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEeCCCCCCCC------HHHHHHHHH
Confidence            999999999999999999986 357889999999999999999999995 478999998865544      334444444


Q ss_pred             C-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhh
Q 015421          323 H-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFF  401 (407)
Q Consensus       323 ~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~  401 (407)
                      . .+.++++|++...+.+.+...+.  .+..++++++|++.+.+.+++||+||++|+|+|||+|++|++||+.|+++|+.
T Consensus       367 ~~~~~vil~G~~~~~l~~~l~~~~~--~~~~~~~~e~a~~~~~~~~~~~d~VL~sp~~~S~d~f~~~~~Rg~~F~~~v~~  444 (445)
T PRK04308        367 GKAKGVFLIGVDAPQIRRDLDGCGL--NLTDCATLEEAVQRAYAQAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAFKA  444 (445)
T ss_pred             HhCcEEEEECCCHHHHHHHHHhcCC--CeEecCCHHHHHHHHHHhCCCCCEEEEChhhhhhccccCHHHHHHHHHHHHHh
Confidence            3 68899999998888877754332  34567899999999999999999999999999999999999999999999986


Q ss_pred             h
Q 015421          402 S  402 (407)
Q Consensus       402 l  402 (407)
                      |
T Consensus       445 ~  445 (445)
T PRK04308        445 L  445 (445)
T ss_pred             C
Confidence            5

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=7e-65  Score=508.77  Aligned_cols=373  Identities=28%  Similarity=0.409  Sum_probs=305.7

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~   83 (407)
                      +||+||+++++||++++|++.++|++++++++.+..  +.++|+||||||||||++||+++|+..|.++.++||+|.|+.
T Consensus        80 lVV~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~--~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gniG~p~~  157 (458)
T PRK01710         80 VIFKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYC--PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTPLF  157 (458)
T ss_pred             EEEECCCCCCCchHHHHHHHcCCcEEechHHhhhhc--CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCccChhHH
Confidence            799999999999999999999999999999888765  568999999999999999999999999999989999999987


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (407)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~  163 (407)
                      ....       ...+.+++|+|+|++++....  ++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.
T Consensus       158 ~~~~-------~~~~~~~~VlE~~~~~~~~~~--~~PdiaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~n~  228 (458)
T PRK01710        158 SNIE-------EIKEEDKVVLELSSFQLMTMD--VSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVLNK  228 (458)
T ss_pred             HHHh-------hCCCCCEEEEEcCccccccCC--CCCCEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence            4321       122568899999987776543  6999999999999999999999999999999999888889999999


Q ss_pred             CChhhHHHHhccccceEEeecCCCccccccc-ccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 015421          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA-KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV  242 (407)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~  242 (407)
                      ||+.+..+......++++|+...+... ... ....+...  +... .....++++|.||++|+++|+  +++..+ +++
T Consensus       229 Dd~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~~--~~~~-~~~~~l~l~G~hnv~NalaA~--a~a~~~-i~~  301 (458)
T PRK01710        229 DNEITNGMEKEAKGDVVKFSRKEKVYE-GAYLKNGKLYIR--GKEV-CKKDDIKLKGMHNVENLLAAF--CAVNDD-VSI  301 (458)
T ss_pred             CcHHHHHHHhhcCCcEEEEeCCCCCCC-ceEEeCCEEEEc--CceE-EEhhhcCCccHhHHHHHHHHH--HHHHhC-CCH
Confidence            999887776444446777875321100 000 01112221  1111 113578999999999999999  777776 999


Q ss_pred             HHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhcc
Q 015421          243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN  322 (407)
Q Consensus       243 ~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~  322 (407)
                      +.|.++|++|++++||||.+. ..++..+|||+||+||.|+.++++.++. ++++|+|+. ++     ...|+++++.+.
T Consensus       302 ~~i~~~L~~f~~~~~R~e~~~-~~~g~~~i~Dsy~~np~s~~~al~~~~~-~~i~IlGg~-~~-----~~~~~~l~~~~~  373 (458)
T PRK01710        302 ESMKKVATTFSGVEHRCEFVR-EINGVKYYNDSIASSPTRTLAGLKAFEK-PVILIAGGY-DK-----KIPFEPLAEEGY  373 (458)
T ss_pred             HHHHHHHHhCCCCCcceEEEE-EECCEEEecccccCCHHHHHHHHHhCCC-CEEEEeCCc-CC-----CCCHHHHHHHHH
Confidence            999999999999999999985 3578999999999999999999999965 689999953 22     236888888764


Q ss_pred             -CccEEEEeCCChHHHHHHHHh----CCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHH
Q 015421          323 -HHRCVITFGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE  397 (407)
Q Consensus       323 -~~~~v~~~g~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~  397 (407)
                       ..+.++++|+....+.+.++.    .+....+..+++.++|++.+.+.+++||+||++|||.|||+|++|++||..|.+
T Consensus       374 ~~~~~vi~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gd~VLlspa~aS~d~f~~~~~RG~~F~~  453 (458)
T PRK01710        374 EKIKTLILMGATKNKIKEAFEKVISEKGIDIPIVIVNSLEEAVKVAKEIAEKGDIVTLSPACASFDMFPNFEIRGNKFKE  453 (458)
T ss_pred             hhccEEEEECCCHHHHHHHHhhcccccCCCcceEEcCCHHHHHHHHHHhCCCCCEEEeChhhcccccccCHHHHHHHHHH
Confidence             368999999999888887742    222123456789999999999999999999999999999999999999999999


Q ss_pred             HHhhh
Q 015421          398 LAFFS  402 (407)
Q Consensus       398 ~~~~l  402 (407)
                      +|+.|
T Consensus       454 ~v~~~  458 (458)
T PRK01710        454 IVNNL  458 (458)
T ss_pred             HHHhC
Confidence            99864

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.9e-64  Score=505.33  Aligned_cols=369  Identities=28%  Similarity=0.434  Sum_probs=303.4

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~   83 (407)
                      +||+||+++++||++++|+++++|++++++++++..  +.++|+||||||||||++||+++|+..|+++.++||+|.|..
T Consensus        71 ~vV~sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~~  148 (448)
T PRK03803         71 EIIISPGLALDTPALRAAAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPAL  148 (448)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHHH
Confidence            799999999999999999999999999999998887  468999999999999999999999999999999999999974


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (407)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~  163 (407)
                      ...         ..+.+++|+|+|+++++.+.. ++|+++|||||++||+++|+|+|+|+++|.++++.   .+.+|+|.
T Consensus       149 ~~~---------~~~~~~~V~E~ss~~l~~~~~-~~P~iaVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~n~  215 (448)
T PRK03803        149 DLL---------SDDPELYVLELSSFQLETTHS-LNAEVATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVFNR  215 (448)
T ss_pred             HHh---------cCCCCEEEEEcChhhhCcCcc-cCccEEEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEEeC
Confidence            422         124588999999998887665 89999999999999999999999999999999984   47899999


Q ss_pred             CChhhHHHHhccccceEEeecCCC----cccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcC
Q 015421          164 GNQHLNEAIKGHRFNLAWIGAFPG----VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG  239 (407)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lg  239 (407)
                      ||+.+..+... ..++++|+....    +.+... ....+.... + ...+....++++|.||++|+++|+  +++..+|
T Consensus       216 dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~l~l~G~Hn~~NalaAi--a~a~~lg  289 (448)
T PRK03803        216 DDALTRPLVPD-NQPCLSFGLNAPDFDEWGLREG-DGETYLAHG-F-ERLMPVRELKLRGSHNLANALAAL--ALGEAAG  289 (448)
T ss_pred             CCHHHHHHhhc-CCcEEEEeCCCCCcCceEEEec-CCeEEEEeC-C-ceEEehhccCCCCHHHHHHHHHHH--HHHHHcC
Confidence            99988776543 245677774311    111000 011122111 1 111122468999999999999999  8999999


Q ss_pred             CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHh
Q 015421          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEK  316 (407)
Q Consensus       240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~  316 (407)
                      ++++.|.++|++|++++||||++. ..+++.+|||+|||||+|+.++++.+.   ++|+++|+|++.+..+      +++
T Consensus       290 i~~~~i~~~L~~f~g~~~R~e~v~-~~~gv~~idDs~atN~~a~~~al~~l~~~~~~~iilI~Gg~~k~~d------~~~  362 (448)
T PRK03803        290 LPKEAMLEVLRTFTGLPHRCEWVR-EVAGVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGKGAD------FSP  362 (448)
T ss_pred             CCHHHHHHHHhhCCCCCCceEEEE-EeCCeEEEEcCCcCCHHHHHHHHHhhhhcCCCCEEEEECCCCCCCC------HHH
Confidence            999999999999999999999986 357789999999999999999999984   2578999998755332      445


Q ss_pred             hhhhccC-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHH
Q 015421          317 LIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF  395 (407)
Q Consensus       317 ~~~~l~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~  395 (407)
                      +.+.+.+ .+.++++|+....+.+.++..   ..+..++++++|++.+.+.+++||+||++|+|+|||+|++|++||+.|
T Consensus       363 l~~~l~~~~~~vil~G~~~~~i~~~l~~~---~~~~~~~~~~~a~~~a~~~a~~gdvVL~SPa~aSfd~f~~~~~RG~~F  439 (448)
T PRK03803        363 LREPVAKYVRAVVLIGRDADKIAAALGGA---VPLVRVATLAEAVAKAAELAQAGDIVLLSPACASLDMFKNFEARGDDF  439 (448)
T ss_pred             HHHHHHhhCCEEEEECCCHHHHHHHHhcC---CCEEEeCCHHHHHHHHHHhCCCCCEEEeCchhhcccccCCHHHHHHHH
Confidence            6555543 688999999998888877532   135567899999999999999999999999999999999999999999


Q ss_pred             HHHHhhhc
Q 015421          396 QELAFFSK  403 (407)
Q Consensus       396 ~~~~~~l~  403 (407)
                      .++|+.|-
T Consensus       440 ~~~v~~~~  447 (448)
T PRK03803        440 RQAVEALA  447 (448)
T ss_pred             HHHHHHhh
Confidence            99998763

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=3.6e-64  Score=501.23  Aligned_cols=364  Identities=29%  Similarity=0.430  Sum_probs=298.2

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~   83 (407)
                      +||+||+++++||++++|++.|+|++++++++++.+  +.++|+||||||||||++||+++|+..|.++.++||+|.|..
T Consensus        71 ~vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~~~  148 (438)
T PRK04663         71 LVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAV--DKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVPAL  148 (438)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHHHH
Confidence            699999999999999999999999999999998876  468999999999999999999999999999999999999863


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (407)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~  163 (407)
                      .. .        ..+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++.   .+.+|+|.
T Consensus       149 ~~-~--------~~~~~~~V~E~ss~~l~~~~-~~~p~iavitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~n~  215 (438)
T PRK04663        149 DL-L--------EQDAELYVLELSSFQLETTS-SLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVVNR  215 (438)
T ss_pred             hh-h--------cCCCCEEEEEcChhhhccCc-ccCCCEEEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEEeC
Confidence            31 1        23568899999999887544 489999999999999999999999999999999984   37999999


Q ss_pred             CChhhHHHHhccccceEEeecCC-CcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 015421          164 GNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV  242 (407)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~  242 (407)
                      ||+.......  ..++++|+... ++.... .....+.....+ . .+....++++|.||++|+++|+  +++..+|+++
T Consensus       216 dd~~~~~~~~--~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~l~l~G~hNv~NalaAi--a~a~~lGi~~  288 (438)
T PRK04663        216 DDKQTYPDHA--ELQLVTFGFDQQDFGLAQ-HQGREWLADNGQ-P-VLASAELKLVGRHNVANVLVVL--ALLDAAGVDY  288 (438)
T ss_pred             CCHHHHhhhc--CCcEEEEecCCCCCCeEe-cCCeEEEEeCCc-e-eeehhhcCCcchhhHHHHHHHH--HHHHHcCCCH
Confidence            9998654432  34577787532 111110 011122221111 1 1123578999999999999999  8999999999


Q ss_pred             HHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC-CCcEEEEECCCCCCCCCCCCcchHhhhhhc
Q 015421          243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPL  321 (407)
Q Consensus       243 ~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l  321 (407)
                      +.|+++|++|++++||||++.. .+++.+|||+||+||+|+.+|++.+. .+|+++|+|+|.+.++      ++++.+.+
T Consensus       289 ~~i~~~L~~f~g~~~R~e~v~~-~~g~~~idDs~~tn~~s~~~Al~~~~~~~~~i~IlGg~~~~~~------~~~l~~~~  361 (438)
T PRK04663        289 RKALDALKSYTGLTHRCQVVAD-NHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGKGAD------FSPLKPVL  361 (438)
T ss_pred             HHHHHHHHhCCCCCCceEEeee-eCCcEEEeCCCcCCHHHHHHHHHhcccCCcEEEEECCccCCCC------HHHHHHHH
Confidence            9999999999999999999963 57889999999999999999999985 3589999999977664      34666665


Q ss_pred             cC-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHh
Q 015421          322 NH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF  400 (407)
Q Consensus       322 ~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~  400 (407)
                      .. .+.++++|+....+.....      .+..+++.++|++.+.+.+++||+||+++||.||++|++|++||..|.++|+
T Consensus       362 ~~~~~~vi~~G~~~~~~~~~~~------~~~~~~~~e~av~~~~~~~~~gd~VLlsp~~as~d~f~~~~~RG~~F~~~v~  435 (438)
T PRK04663        362 ATLNLQLCCFGEDGDQFMPLHP------SARRFDTMEDAIESISPQLKSGDMVMLSPACASFDQFKNFMARGDAFAQLAR  435 (438)
T ss_pred             HhhCcEEEEECCCHHHHHHHhc------cCeecCCHHHHHHHHHHhCCCCCEEEECcccccccCcCCHHHHHHHHHHHHH
Confidence            43 3578899998876654331      1345678999999999989999999999999999999999999999999998


Q ss_pred             hh
Q 015421          401 FS  402 (407)
Q Consensus       401 ~l  402 (407)
                      .|
T Consensus       436 ~~  437 (438)
T PRK04663        436 QY  437 (438)
T ss_pred             hh
Confidence            75

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=6.1e-64  Score=504.30  Aligned_cols=371  Identities=26%  Similarity=0.373  Sum_probs=295.7

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCC-----CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~-----~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~   77 (407)
                      -+||.||.++++||++++|++.|+|++++++++++...     .+.++|+||||||||||++||+++|+..|.++.+.||
T Consensus        72 D~VV~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn  151 (488)
T PRK03369         72 ALVVTSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN  151 (488)
T ss_pred             CEEEECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC
Confidence            37999999999999999999999999999999876531     1347999999999999999999999999998899999


Q ss_pred             CCccchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCc
Q 015421           78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK  157 (407)
Q Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~  157 (407)
                      +|.|+... +        ..+.+++|+|+|+++++.+. .++|+++|||||++||+++|||+|+|+++|.+|++    ++
T Consensus       152 iG~p~~~~-~--------~~~~~~~VlE~ss~ql~~~~-~~~P~vaVITNI~~DHLd~~gt~e~ya~aK~~I~~----~~  217 (488)
T PRK03369        152 IGSPVLDV-L--------DEPAELLAVELSSFQLHWAP-SLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALT----GR  217 (488)
T ss_pred             CchHHHHh-c--------cCCCCEEEEECChHHhCccc-ccCCCEEEEcCCCHHHhhhcCCHHHHHHHHHHHhc----CC
Confidence            99998432 1        24668899999999887653 48999999999999999999999999999999997    37


Q ss_pred             eEEEeCCChhhHHHHhccccc-eEEeecCC----CcccccccccceeEec--cCCeeeeeeecccCCCChhHHHHHHHHH
Q 015421          158 LGLLPFGNQHLNEAIKGHRFN-LAWIGAFP----GVKIDTEAKTASFEVP--AVGVVSQLQLHNMKVMGRHNYHNAAVAA  230 (407)
Q Consensus       158 ~~v~n~dd~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~G~~~~~Nal~A~  230 (407)
                      .+|+|.||+....+....... ...++...    ++.+.    ...+...  ..+.. ......++++|.||++|+++|+
T Consensus       218 ~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~l~l~G~hnv~NalaAl  292 (488)
T PRK03369        218 VAVVGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVR----DGHLVDRAFADDLR-LAPVASIPVPGPVGVLDALAAA  292 (488)
T ss_pred             EEEEECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEE----CCEEEEeccCCccc-eechhhcCCCcHhHHHHHHHHH
Confidence            999999999887765433221 22232111    11110    0011000  00100 0112468899999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCC
Q 015421          231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE  310 (407)
Q Consensus       231 ~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~  310 (407)
                        +++..+|++++.|.++|++|++++||||++. ..+++.+|||||||||+|+.++++.++  ++++|+|++.+..    
T Consensus       293 --a~a~~lGi~~e~i~~~L~~f~~~~gR~E~v~-~~~gv~iIDDS~AhNp~s~~aal~~~~--~iilI~GG~~k~~----  363 (488)
T PRK03369        293 --ALARAVGVPAGAIADALASFRVGRHRAEVVA-VADGITYVDDSKATNPHAARASILAYP--RVVWIAGGLLKGA----  363 (488)
T ss_pred             --HHHHHcCCCHHHHHHHHHhCCCCCCccEEEE-cCCCEEEEECCCCCCHHHHHHHHHhCC--CeEEEecCcCCCC----
Confidence              8999999999999999999999999999996 357889999999999999999999884  6899997665422    


Q ss_pred             CcchHhhhhhcc-CccEEEEeCCChHHHHHHHHhCCCCcccccc----------------------c----------cHH
Q 015421          311 SNGFEKLIEPLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAV----------------------A----------NMK  357 (407)
Q Consensus       311 ~~~~~~~~~~l~-~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~----------------------~----------~~~  357 (407)
                        .++.+.+.+. ..+.++++|+....+.+.+........+..+                      +          +++
T Consensus       364 --d~~~l~~~l~~~~~~vi~iG~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  441 (488)
T PRK03369        364 --SVDALVAEMASRLVGAVLIGRDRAVVAEALSRHAPDVPVVQVVTGEDAGMPATPEVPVACVTDVADDDGETLGDAVMA  441 (488)
T ss_pred             --CHHHHHHHHhhheeEEEEEcCCHHHHHHHHHhcCCCCCEEEeccccccccccccccccccccccccccccccchhhHH
Confidence              3556777665 3688999999999998888642111112222                      1          599


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhhc
Q 015421          358 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSK  403 (407)
Q Consensus       358 ~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l~  403 (407)
                      +|++.|.+.+++||+||++|+|+|||+|++|++||+.|.++|+.|.
T Consensus       442 ~av~~a~~~a~~gd~vLlSPacaSfd~f~~y~~RG~~F~~~v~~~~  487 (488)
T PRK03369        442 AAVAAARRLARPGDTVLLAPAGASFDQFTGYGDRGDAFAAAVRAAI  487 (488)
T ss_pred             HHHHHHHHhCCCCCEEEeChhhcccccccCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999874

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.5e-63  Score=500.54  Aligned_cols=375  Identities=28%  Similarity=0.374  Sum_probs=302.8

Q ss_pred             eeeeeccccCcCcH----HHHHHHhcCCceeeHHHHHHhhCC---CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeec
Q 015421            3 MLWLFLLEFQLKAT----GLACLLQSGKRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG   75 (407)
Q Consensus         3 ~~~~~~~~~~~~~p----~l~~a~~~~~~~l~~~~~~~~~~~---~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~   75 (407)
                      -+||+||+++++||    ++..|++.|+|++++++++++...   .+.++|+||||||||||++||+++|+..|.++.++
T Consensus        67 d~vv~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~  146 (460)
T PRK01390         67 AALVLSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQMG  146 (460)
T ss_pred             CEEEECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEc
Confidence            36999999999987    999999999999999999987641   25789999999999999999999999999999999


Q ss_pred             ccCCccchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCC
Q 015421           76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVN  155 (407)
Q Consensus        76 g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~  155 (407)
                      ||+|.|+.....        ..+.+++|+|+|+++++.++. ++|+++|||||++||+++|||+|+|+++|+++++..++
T Consensus       147 gnig~~~~~~~~--------~~~~~~~V~E~~~~~ld~t~~-i~P~iaVITNI~~DHld~lgsle~ia~~K~~ii~~~~~  217 (460)
T PRK01390        147 GNIGTAVLTLEP--------PPAGRVYVLELSSYQIDLAPS-LDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQGP  217 (460)
T ss_pred             Cccchhhhhccc--------CCCCCEEEEEcCccccccccc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCC
Confidence            999999765421        335689999999988887765 79999999999999999999999999999999997766


Q ss_pred             CceEEEeCCChhhHHHHhcc---ccceEEeecCCCc--ccccccccceeEeccCCeeeeeeec--ccCCCChhHHHHHHH
Q 015421          156 TKLGLLPFGNQHLNEAIKGH---RFNLAWIGAFPGV--KIDTEAKTASFEVPAVGVVSQLQLH--NMKVMGRHNYHNAAV  228 (407)
Q Consensus       156 ~~~~v~n~dd~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~G~~~~~Nal~  228 (407)
                       +.+|+|.||+.+..+....   ..++++++.....  ..... ....+... .+........  .++++|.||++|+++
T Consensus       218 -~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~G~hn~~Na~a  294 (460)
T PRK01390        218 -DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYAD-GGKLVDAR-GGRQVEIADLRGIPSLPGAHNAQNAAA  294 (460)
T ss_pred             -CEEEEeCCCHHHHHHHHhccccCceEEEEeCCCCCcCceEEe-CCEEEEec-CCCcceeeeHHhhccCCchhHHHHHHH
Confidence             8999999999877665432   3456667643210  00000 01111111 1100000001  257899999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCC
Q 015421          229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG  308 (407)
Q Consensus       229 A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~  308 (407)
                      |+  +++..+|++.+.|.++|++|++++||||++. ..++..+|||+|||||+|+.++|+.+.  ++++|+|++.++.  
T Consensus       295 Ai--aa~~~lgi~~~~i~~gL~~~~~~~gR~e~i~-~~~g~~vIdDs~ahNp~s~~~aL~~~~--~i~~I~G~~d~~~--  367 (460)
T PRK01390        295 AY--AAARALGLSPEEIAAGLASFPGLAHRMEQVG-RRGGVLFVNDSKATNADAAAKALSSFD--RIYWIAGGKPKEG--  367 (460)
T ss_pred             HH--HHHHHcCCCHHHHHHHHHhCCCCCCceEEEe-eeCCcEEEEcCCCCCHHHHHHHHHhCC--CeEEEecCccCCC--
Confidence            99  8889999999999999999999999999996 346789999999999999999999874  7889999654332  


Q ss_pred             CCCcchHhhhhhccCccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhc----CCCCEEEEcCCCCCccc
Q 015421          309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA----TNGDAIVLSPGCASFDE  384 (407)
Q Consensus       309 ~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~----~~gd~vL~~~G~~s~~~  384 (407)
                          .++.+.......+.++++|.++..+.+.++..   ..+..++++++|++.+.+.+    ++||+||++|||.||++
T Consensus       368 ----~~~~L~~~~~~v~~v~~~g~~~~~l~~~~~~~---~~~~~~~~l~~Av~~a~~~a~~~~~~g~~vllsP~~as~d~  440 (460)
T PRK01390        368 ----GIESLAPFFPRIAKAYLIGEAAEAFAATLGGA---VPFEICGTLERAVAAAAADAAADGAPEPVVLLSPACASFDQ  440 (460)
T ss_pred             ----CHHHHHHHHHhhCEEEEECCCHHHHHHHHhcC---CCEEEeCCHHHHHHHHHHhhhccCCCCCEEEeChhhhcccc
Confidence                34555555444677888999999999888643   13556789999999999999    99999999999999999


Q ss_pred             ccChhhhhHHHHHHHhhhc
Q 015421          385 FRNFEHRGMVFQELAFFSK  403 (407)
Q Consensus       385 ~~~~~~r~~~~~~~~~~l~  403 (407)
                      |++|++||..|.++|+.|.
T Consensus       441 f~~~~~rg~~f~~~~~~~~  459 (460)
T PRK01390        441 FKNFEVRGDAFRELVAALP  459 (460)
T ss_pred             ccCHHHHHHHHHHHHHHhc
Confidence            9999999999999999875

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=3.4e-63  Score=498.40  Aligned_cols=379  Identities=27%  Similarity=0.425  Sum_probs=304.1

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~   83 (407)
                      +||++|+++++||++++|++.++|++++++++++.. .+.++|+||||||||||++||+++|+..|.++..+||+|.|++
T Consensus        71 ~vv~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~-~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gniG~~~~  149 (459)
T PRK02705         71 LVVVSPGIPWDHPTLVELRERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYAAC  149 (459)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhh-cCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecccChhHH
Confidence            689999999999999999999999999999998876 4678999999999999999999999999999888999999987


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (407)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~  163 (407)
                      ..... ...  ...+.+++|+|+|+++++..+. ++|+++|||||++||+++|||+|+|+++|.++++.   .+.+|+|.
T Consensus       150 ~~~~~-~~~--~~~~~d~~VlE~~s~~l~~~~~-~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~~---~~~~Vln~  222 (459)
T PRK02705        150 ELALL-RSG--KAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER---SEIRILNG  222 (459)
T ss_pred             HHHhh-hhc--cCCCCCEEEEEccccccccCcc-cCCCEEEEecCChhhhcccCCHHHHHHHHHHHhcc---CCEEEEEC
Confidence            65320 000  1346688999999998888776 89999999999999999999999999999999983   57999999


Q ss_pred             CChhhHHHHhccccceEEeecCCC-cccccc---cccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcC
Q 015421          164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTE---AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG  239 (407)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lg  239 (407)
                      ||+.+..+.... .+.++++.... ......   .......+...+ . .+....++++|.||++|+++|+  +++..+|
T Consensus       223 dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~l~G~hn~~NalaAi--a~a~~lg  297 (459)
T PRK02705        223 DDPYLRQHRSSW-PKGYWTSTQGKASLLGQADGWILEEGWVVERGE-P-LFPLSALKMPGAHNLQNLLLAV--AAARLAG  297 (459)
T ss_pred             CCHHHHHHHhcC-CceEEeccCCccccccccceeEecCCEEEECCc-c-eeeHHHcCCccHHHHHHHHHHH--HHHHHcC
Confidence            999887775443 23455543211 110000   000001111111 0 1111368899999999999999  8999999


Q ss_pred             CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhh
Q 015421          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE  319 (407)
Q Consensus       240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~  319 (407)
                      ++++.|.++|++|++++||||++. ..+++.+|||+|||||+|+.++++.+++ ++++|+|+|.+.++.      .++.+
T Consensus       298 v~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~ii~Ds~a~N~~s~~~al~~l~~-~~i~IlGg~~~~~d~------~~~~~  369 (459)
T PRK02705        298 LSAEAIAEALRSFPGVPHRLERIG-TINGIDFINDSKATNYDAAEVGLKAVPG-PVILIAGGEAKQGDD------SAWLK  369 (459)
T ss_pred             CCHHHHHHHHHhCCCCCCceEEEE-eeCCcEEEEeCCCCCHHHHHHHHHhCCC-CeEEEecCccCCCCH------HHHHH
Confidence            999999999999999999999986 3567899999889999999999999964 789999988765543      23444


Q ss_pred             hcc-CccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCC--CEEEEcCCCCCcccccChhhhhHHHH
Q 015421          320 PLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG--DAIVLSPGCASFDEFRNFEHRGMVFQ  396 (407)
Q Consensus       320 ~l~-~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~g--d~vL~~~G~~s~~~~~~~~~r~~~~~  396 (407)
                      .+. ..+.++++|+.+..+.+.+...+....+..++++++|++.+.+.+++|  |+||+.|+|.||++|++|++||+.|.
T Consensus       370 ~l~~~~~~vi~~g~~~~~l~~~l~~~~~~~~~~~~~~~~eA~~~a~~~a~~g~~~~vllsp~~as~d~f~~~~~rg~~F~  449 (459)
T PRK02705        370 QIKAKAAAVLLFGEAAPTLAQRLQESGYTGEYEIVETLDEAVPRAFELAKELQAKSVLLSPACASFDQYKNFEERGDHFR  449 (459)
T ss_pred             HHHhheeEEEEECCCHHHHHHHHHhcCCCcceEEcCCHHHHHHHHHHHhCCCCCCEEEechhhhhhccccCHHHHHHHHH
Confidence            443 368899999998888888865432112556789999999999988999  79999999999999999999999999


Q ss_pred             HHHhhhc
Q 015421          397 ELAFFSK  403 (407)
Q Consensus       397 ~~~~~l~  403 (407)
                      ++|+.|.
T Consensus       450 ~~v~~~~  456 (459)
T PRK02705        450 QLIQALL  456 (459)
T ss_pred             HHHHHHh
Confidence            9999874

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=5.9e-63  Score=495.24  Aligned_cols=378  Identities=28%  Similarity=0.419  Sum_probs=310.2

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~   82 (407)
                      -+||.+|+++++||++++|++.|+|++++++++++..  +.++|+||||||||||++||+++|+..|.++.+.||+|.|.
T Consensus        70 d~vV~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~--~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig~p~  147 (447)
T PRK02472         70 DLMVKNPGIPYTNPMVEKALEKGIPIITEVELAYLIS--EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYPA  147 (447)
T ss_pred             CEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccChhh
Confidence            4799999999999999999999999999999876665  56899999999999999999999999999889999999998


Q ss_pred             hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEe
Q 015421           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (407)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n  162 (407)
                      +....       ...+.+++|+|+++.++.... .++|+++|||||++||+++|||+|+|+++|.++++..++.+.+|+|
T Consensus       148 ~~~~~-------~~~~~~~~V~E~ss~~~~~~~-~~~P~iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~n  219 (447)
T PRK02472        148 SEVAQ-------KATADDTLVMELSSFQLMGIE-TFRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVIN  219 (447)
T ss_pred             HHHHh-------cCCCCCEEEEEcCchhhCccc-ccCCCEEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            75321       123458899999987766443 4799999999999999999999999999999999988788999999


Q ss_pred             CCChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 015421          163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV  242 (407)
Q Consensus       163 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~  242 (407)
                      .||+.+..++.....++++|+...............+...  +.. .+...+++++|.||++|+++|+  +++..+|+++
T Consensus       220 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~l~G~hn~~Na~aAi--a~~~~lgi~~  294 (447)
T PRK02472        220 FDQEEVKELAKQTKATVVPFSTTEKVEDGAYIKDGALYFK--GEK-IMAADDIVLPGSHNLENALAAI--AAAKLLGVSN  294 (447)
T ss_pred             CCcHHHHHHHhhcCceEEEeecCCCCcCceEEECCEEEEC--Cce-EEehhhcCCCCHHHHHHHHHHH--HHHHHcCCCH
Confidence            9999887776555556777775422110000000112221  111 1112368999999999999999  8899999999


Q ss_pred             HHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhcc
Q 015421          243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN  322 (407)
Q Consensus       243 ~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~  322 (407)
                      +.|.++|++|++++||||++. ..++..+|||+|||||+|+.++++.+ .+++++|+|+. +++     ..++++.+.+.
T Consensus       295 ~~i~~~L~~f~~~~~R~e~~~-~~~g~~vi~D~~a~N~~s~~~al~~~-~~~ii~I~g~~-~~~-----~~~~~l~~~l~  366 (447)
T PRK02472        295 EAIREVLSTFSGVKHRLQYVG-TIDGRKFYNDSKATNILATQKALSGF-NQPVVLLAGGL-DRG-----NEFDELVPYLK  366 (447)
T ss_pred             HHHHHHHHhCCCCCCcceEEE-EECCeEEEECCCCCCHHHHHHHHHhC-CCCEEEEECCC-CCC-----CCHHHHHHHHh
Confidence            999999999999999999985 35678999999999999999999998 46789999854 222     24778888776


Q ss_pred             CccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhh
Q 015421          323 HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFS  402 (407)
Q Consensus       323 ~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l  402 (407)
                      +.+.++++|..+..+.+.++..+.  .+.+++++++|++.+.+.+++||+||++++|.||++|++|++||..|.++|..|
T Consensus       367 ~~~~v~~~G~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~d~VLls~a~~s~d~f~~~~~Rg~~F~~~v~~~  444 (447)
T PRK02472        367 NVKAMVVFGETAEKLARAAEKAGI--TVVEADNVEDAVPKAYELSEPGDVILLSPACASWDQYKTFEERGDEFIKAVEEL  444 (447)
T ss_pred             ccCEEEEECCCHHHHHHHHHhCCC--ceEEcCCHHHHHHHHHHhCCCCCEEEeCccccccccccCHHHHHHHHHHHHHHh
Confidence            678899999999888887754432  355678999999999988999999999999999999999999999999999998


Q ss_pred             ccc
Q 015421          403 KHD  405 (407)
Q Consensus       403 ~~~  405 (407)
                      +.|
T Consensus       445 ~~~  447 (447)
T PRK02472        445 KGK  447 (447)
T ss_pred             ccC
Confidence            764

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.3e-62  Score=493.26  Aligned_cols=378  Identities=26%  Similarity=0.366  Sum_probs=294.2

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhh-----CCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQV-----IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~-----~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~   77 (407)
                      -+||+||+++++||++++|++.++++++++++.++.     +..+.++|+||||||||||++||+++|+..|.++.+.||
T Consensus        76 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gn  155 (473)
T PRK00141         76 SLVVTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGN  155 (473)
T ss_pred             CEEEeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEecc
Confidence            379999999999999999999999999999986653     212347999999999999999999999999999999999


Q ss_pred             CCccchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCc
Q 015421           78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK  157 (407)
Q Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~  157 (407)
                      +|.|++....       ...+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++    .+
T Consensus       156 ig~p~~~~l~-------~~~~~~~~V~E~ss~~l~~~~-~~~pdiaViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~  223 (473)
T PRK00141        156 IGVPVSAALV-------AQPRIDVLVAELSSFQLHWSP-TLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLR----GP  223 (473)
T ss_pred             CChhHHHHHh-------cCCCCCEEEEecCCcccccCc-ccCCCEEEEcCCChhhccccCCHHHHHHHHHHHhh----CC
Confidence            9999874322       134668999999998876543 48999999999999999999999999999999997    36


Q ss_pred             eEEEeCCChhhHHHHhcc-ccceEEeecCCCcccccccccceeEeccCCeeeeee-ecccCCCChhHHHHHHHHHHHHHH
Q 015421          158 LGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLG  235 (407)
Q Consensus       158 ~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~G~~~~~Nal~A~~~a~~  235 (407)
                      .+|+|.||+.+..+.... ..++++|+...............+.....+..+.+. ...++++|.||++|+++|+  +++
T Consensus       224 ~~vln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~--a~~  301 (473)
T PRK00141        224 VAVIGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAA--AVA  301 (473)
T ss_pred             EEEEECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHH--HHH
Confidence            899999999988776443 235677774321000000001112111112122221 2468999999999999999  889


Q ss_pred             HHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCC-CCCCCCCCCcch
Q 015421          236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ-AKVLNGQESNGF  314 (407)
Q Consensus       236 ~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~-~~~~~~~~~~~~  314 (407)
                      ..+|++.+.+.++|++|++++||||++. ..++..+|||||||||+|++++++.++  ++++|+|++ .+++       +
T Consensus       302 ~~lgi~~~~i~~~l~~~~~~~~R~e~~~-~~~~~~iiDdsyahNp~s~~~~l~~l~--~~~~i~gG~~kdkd-------~  371 (473)
T PRK00141        302 RSQGVAPEAIARALSSFEVAGHRGQVVA-EHGGVTWIDNSKATNPHAADAALAGHE--SVVWVAGGQLKGAD-------I  371 (473)
T ss_pred             HHcCCCHHHHHHHHhhCCCCCCceEEEE-EeCCEEEEEcCCCCCHHHHHHHHHhcC--CEEEEecCccCCCC-------h
Confidence            9999999999999999998888999985 256889999999999999999999985  678999555 5443       3


Q ss_pred             HhhhhhccC-ccEEEEeCCChHHHHHHHHhCCC--Ccccccc----ccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccC
Q 015421          315 EKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGL--SIPCFAV----ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN  387 (407)
Q Consensus       315 ~~~~~~l~~-~~~v~~~g~~~~~~~~~l~~~~~--~~~~~~~----~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~  387 (407)
                      +.+...+.+ .+.++++|.+...+.+.+...-.  .......    +++++|++.|.+.+++||+||++|||.|||+|++
T Consensus       372 ~~~~~~l~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VllsPa~aS~d~f~~  451 (473)
T PRK00141        372 DDLIRTHAPRIKAAVVLGVDRAEIVAALAEHAPDAPVTVTDSTDPEEAMEEAVSAAVSLAEPGDTVLLAPAAASLDMYTG  451 (473)
T ss_pred             HHHHHHHHhhccEEEEECCCHHHHHHHHHhcCCCCcEEEecCcccccCHHHHHHHHHHhCCCCCEEEeChhhhccccccC
Confidence            445554432 45677778777667776654211  1111222    2459999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhhhcc
Q 015421          388 FEHRGMVFQELAFFSKH  404 (407)
Q Consensus       388 ~~~r~~~~~~~~~~l~~  404 (407)
                      |++||++|.++|+.|.+
T Consensus       452 ~~~RG~~F~~~v~~l~~  468 (473)
T PRK00141        452 MGQRGDLFAEAARRTIR  468 (473)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998854

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=3.5e-62  Score=487.85  Aligned_cols=367  Identities=28%  Similarity=0.419  Sum_probs=297.6

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~   82 (407)
                      -+||++|+++++||++.+|+++|++++++++++++..  +.++|+||||||||||++||+++|+..|.++.++||+|.|.
T Consensus        67 d~vv~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p~  144 (438)
T PRK03806         67 DLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLPA  144 (438)
T ss_pred             CEEEECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchhH
Confidence            3799999999999999999999999999999988765  46899999999999999999999999999999999999986


Q ss_pred             hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccC-CCHHHHHHHHHHhhcccCCCceEEE
Q 015421           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL  161 (407)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~-~t~e~i~~~K~~i~~~~~~~~~~v~  161 (407)
                      ... +        ..+.+++|+|+|+++++.+.. ++|+++|||||++||+++| +|+|+|+++|.++++.   .+.+|+
T Consensus       145 ~~~-~--------~~~~~~~V~E~ss~~l~~~~~-~~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~  211 (438)
T PRK03806        145 LSL-L--------DQECELYVLELSSFQLETTSS-LKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVV  211 (438)
T ss_pred             HHh-h--------ccCCCEEEEEccchhhccCcc-cCCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEE
Confidence            321 1        335688999999998887654 7999999999999999999 6999999999999984   478999


Q ss_pred             eCCChhhHHHHhccccceEEeecCC-CcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCC
Q 015421          162 PFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV  240 (407)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi  240 (407)
                      |.||+.+..+... ..++.+|+... ++..... ....+.....+ . .+..++++++|.||++|+++|+  +++..+|+
T Consensus       212 n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi  285 (438)
T PRK03806        212 NADDALTMPIRGA-DKRCVSFGVNMGDYHLNRQ-QGETWLRVKGE-K-VLNTKEMKLSGQHNYTNALAAL--ALADAVGI  285 (438)
T ss_pred             eCCCHHHHHHhcC-CceEEEEecCCCceEEEec-CCeEEEEecCc-e-eeehhhcCCcccccHHHHHHHH--HHHHHcCC
Confidence            9999988775432 34566776431 1111100 11111111111 0 1123468999999999999999  89999999


Q ss_pred             CHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC-CCcEEEEECCCCCCCCCCCCcchHhhhh
Q 015421          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIE  319 (407)
Q Consensus       241 ~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~V~g~~~~~~~~~~~~~~~~~~~  319 (407)
                      +++.|.++|++|++++||||++. ..++..+|||+|+|||+|++++++.+. .+++++|+|++.+.++      +.++.+
T Consensus       286 ~~~~i~~~L~~f~~~~gR~E~v~-~~~~~~~i~Ds~a~n~~a~~~al~~l~~~~~~i~IlG~~~k~~d------~~~l~~  358 (438)
T PRK03806        286 PRASSLKALTTFTGLPHRFQLVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSAD------FSPLAR  358 (438)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEEE-eeCCEEEEEcCCCCCHHHHHHHHHhCccCCcEEEEECCcCCCCC------HHHHHH
Confidence            99999999999999999999985 356789999989999999999999986 3578999998755443      445666


Q ss_pred             hccC-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHH
Q 015421          320 PLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL  398 (407)
Q Consensus       320 ~l~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~  398 (407)
                      .+.+ ...++++|++...+.+.+..     .+.++++.++|++.+.+.+++||+||++|+|.||++|++|++||+.|.++
T Consensus       359 ~l~~~~~~v~~~g~~~~~l~~~~~~-----~~~~~~~~~~av~~a~~~~~~gd~VLlsp~~as~d~f~~~~~RG~~F~~~  433 (438)
T PRK03806        359 YLNGDNIRLYCFGRDGAQLAALRPE-----VSQLTETMEQAMRLIAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARL  433 (438)
T ss_pred             HHHhhCcEEEEECCCHHHHHHHhhc-----ceEecCCHHHHHHHHHHhCCCCCEEEEChhhhhhcCccCHHHHHHHHHHH
Confidence            5542 34788899988887765422     13456889999999999999999999999999999999999999999999


Q ss_pred             Hhhh
Q 015421          399 AFFS  402 (407)
Q Consensus       399 ~~~l  402 (407)
                      |..|
T Consensus       434 v~~~  437 (438)
T PRK03806        434 AKEL  437 (438)
T ss_pred             HHhh
Confidence            9865

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=7.1e-62  Score=486.94  Aligned_cols=375  Identities=25%  Similarity=0.345  Sum_probs=299.4

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHH-HHhhCCC---CCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccC
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDF-AAQVIPR---SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL   78 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~-~~~~~~~---~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~   78 (407)
                      -+||+||+++++||++++|++.++|+++++++ +.+..+.   ..++|+||||||||||++||+++|+..|.++.+.||+
T Consensus        71 d~vV~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gni  150 (468)
T PRK04690         71 DVVVKSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNI  150 (468)
T ss_pred             CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCC
Confidence            36999999999999999999999999999998 4443311   2479999999999999999999999999988999999


Q ss_pred             CccchhhhhhcccCCCCCCCCcEEEEEecccccccCCc-cccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCc
Q 015421           79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK  157 (407)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~-~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~  157 (407)
                      |.|+.....       ...+.+++|+|+|++++..... .++|+++|||||++||+++|+|+|+|.++|.++++...+ +
T Consensus       151 G~p~~~~~~-------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~~-~  222 (468)
T PRK04690        151 GVPLLEVLA-------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRP-R  222 (468)
T ss_pred             CcchHHHhc-------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCCC-C
Confidence            999854321       1235688999999988765543 389999999999999999999999999999999987543 6


Q ss_pred             eEEEeCCChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHH
Q 015421          158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD  237 (407)
Q Consensus       158 ~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~  237 (407)
                      .+|+|.||+....+.. ...++++|+........     ..+.+.. + ...+....++++|.||++|+++|+  +++..
T Consensus       223 ~~v~n~dd~~~~~~~~-~~~~v~~~~~~~~~~~~-----~~~~~~~-~-~~~~~~~~~~l~G~h~~~Na~~A~--a~~~~  292 (468)
T PRK04690        223 IALLNAADPRLAALQL-PDSEVVWFNHPDGWHVR-----GDVVYRG-E-QALFDTALVPLPGRHNRGNLCAVL--AALEA  292 (468)
T ss_pred             eEEEeCccHHHHHHhc-CCCeEEEeeCCccceec-----ceEEEcC-C-ceEEeeccccCccHhhHHHHHHHH--HHHHH
Confidence            8899999998766532 23466777643211110     1122221 1 111223468899999999999999  88889


Q ss_pred             cCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhh
Q 015421          238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL  317 (407)
Q Consensus       238 lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~  317 (407)
                      +|++++.|.++|++|.++|||||++. ..+|+.+||||+||||+|+.++++.++++++++|+|++.+..      .++.+
T Consensus       293 lgi~~~~i~~~l~~~~~~~gR~e~~~-~~~g~~iidDs~ahNp~a~~~al~~~~~~~i~~i~Gg~~k~k------d~~~l  365 (468)
T PRK04690        293 LGLDAVALAPAAAGFRPLPNRLQELG-SRDGITYVNDSISTTPHASLAALDCFAGRRVALLVGGHDRGL------DWTDF  365 (468)
T ss_pred             cCCCHHHHHHHHHhCCCCCCCcEEEE-ccCCeEEEEeCCCCCHHHHHHHHHhccCCcEEEEEcCCCCCC------CHHHH
Confidence            99999999999999999999999986 356899999999999999999999987678899999763221      24567


Q ss_pred             hhhccC--ccEEEEeCCChHHHHHHHHhCCC--CccccccccHHHHHHHHHH-hcCCCCEEEEcCCCCCcccccChhhhh
Q 015421          318 IEPLNH--HRCVITFGYSGVLIWKTLVNNGL--SIPCFAVANMKDAVNHARR-MATNGDAIVLSPGCASFDEFRNFEHRG  392 (407)
Q Consensus       318 ~~~l~~--~~~v~~~g~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~a~~-~~~~gd~vL~~~G~~s~~~~~~~~~r~  392 (407)
                      .+.+.+  .+.++++|.+...+.+.+.....  ...+..++++++|++.+.+ ...+||+||+.|||.|||+|++|++||
T Consensus       366 ~~~l~~~~~~~v~~~g~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Av~~A~~~~~~~gdvVLlSPa~aSfD~f~~y~~RG  445 (468)
T PRK04690        366 AAHMAQRAPLEIVTMGANGPRIHALLAPLAAAGRFGLHAADDLAHAVRLARTALGAQGGVVLLSPGAPSFGAYRDYVARG  445 (468)
T ss_pred             HHHHHhccCeEEEEeCCCHHHHHHHHHhcccccCCceEEcCCHHHHHHHHHHHhCCCCCEEEeCccccccccccCHHHHH
Confidence            666653  37788889888777776654210  1235567899999999988 788999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 015421          393 MVFQELAFFS  402 (407)
Q Consensus       393 ~~~~~~~~~l  402 (407)
                      +.|.+++..+
T Consensus       446 ~~F~~~~~~~  455 (468)
T PRK04690        446 RHFAQLAGFD  455 (468)
T ss_pred             HHHHHHhccC
Confidence            9999998766

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=3.1e-61  Score=486.40  Aligned_cols=379  Identities=28%  Similarity=0.401  Sum_probs=299.5

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCC--CCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCcc
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~--~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (407)
                      +||.++.++|++|++..|.+.|++++++++++++..+.  +.++|+||||||||||++||+++|+..|.++.+.||+|.|
T Consensus        81 ~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gnig~~  160 (480)
T PRK01438         81 LVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNIGTP  160 (480)
T ss_pred             EEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCccHH
Confidence            68999999999999999999999999999998776522  4679999999999999999999999999999899999999


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEE
Q 015421           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (407)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~  161 (407)
                      +.....       ...+++++|+|+|+++++..+. ++|+++|||||++||+++|||+|+|+++|++|++.  ..+.+|+
T Consensus       161 ~~~~~~-------~~~~~~~~V~E~ss~~l~~~~~-i~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~--~~~~~v~  230 (480)
T PRK01438        161 VLDAVR-------DPEGYDVLAVELSSFQLHWSPS-VSPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEG--TTVACVY  230 (480)
T ss_pred             HHHHHh-------cCCCCCEEEEEcChHHhCcCcc-cCCCEEEEecCChhhccccCCHHHHHHHHHHHHhC--CCceEEE
Confidence            864321       2446789999999998876654 78999999999999999999999999999999995  2478999


Q ss_pred             eCCChhhHHHHhcc----ccceEEeecCC----Ccccccccc-cceeEeccCCeeeeee-ecccCCCChhHHHHHHHHHH
Q 015421          162 PFGNQHLNEAIKGH----RFNLAWIGAFP----GVKIDTEAK-TASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAAL  231 (407)
Q Consensus       162 n~dd~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~l~~~G~~~~~Nal~A~~  231 (407)
                      |.||+....+....    ..++++|+...    .+....... ...+.....+..+.+. ...++++|.||++|+++|+ 
T Consensus       231 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi-  309 (480)
T PRK01438        231 NVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAAA-  309 (480)
T ss_pred             eCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHHH-
Confidence            99999887765432    34566666421    111100000 0001111000001111 1258999999999999999 


Q ss_pred             HHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECC-CCCCCCCCC
Q 015421          232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG-QAKVLNGQE  310 (407)
Q Consensus       232 ~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~-~~~~~~~~~  310 (407)
                       +++..+|++.+.|+++|++|++++||||++.. .+++.+|||+|||||+|++++++.+  +++++|+|+ +.+++    
T Consensus       310 -a~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~~-~~~~~iiDDs~ahNp~a~~aaL~~l--~~i~~I~gG~~~~kd----  381 (480)
T PRK01438        310 -ALARSFGVPPAAVRDGLRAFRPDAHRIEHVAD-ADGVTWVDDSKATNPHAAAASLAAY--PSVVWIAGGLAKGAD----  381 (480)
T ss_pred             -HHHHHcCCCHHHHHHHHHhCCCCCCceEEEEE-ECCEEEEecCccCCHHHHHHHHHhC--CCEEEEEecccCCCC----
Confidence             88888999999999999999999999999963 5678899999999999999999999  378899974 44432    


Q ss_pred             CcchHhhhhhccC-ccEEEEeCCChHHHHHHHHhCCCCccccccc-----cHHHHHHHHHHhcCCCCEEEEcCCCCCccc
Q 015421          311 SNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVA-----NMKDAVNHARRMATNGDAIVLSPGCASFDE  384 (407)
Q Consensus       311 ~~~~~~~~~~l~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~-----~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~  384 (407)
                         +..+.+.+.+ .+.++++|.+...+.+.++.......+..++     ++++|++.+.+.+.++|+||+.|+|.||++
T Consensus       382 ---~~~~~~~l~~~~~~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~~~d~vllsp~~as~d~  458 (480)
T PRK01438        382 ---FDDLVRRAAGRLRGVVLIGADRAEIAEALARHAPDVPVVEVDRTDTGAMDEAVAAAAKLARPGDTVLLAPAAASMDM  458 (480)
T ss_pred             ---HHHHHHHHHhhceEEEEECCCHHHHHHHHHhcCCCCCEEEecCCCcCCHHHHHHHHHHhCCCCCEEEechhhhcccc
Confidence               3445555543 6889999999888888786531111233334     899999999999999999999999999999


Q ss_pred             ccChhhhhHHHHHHHhhhcc
Q 015421          385 FRNFEHRGMVFQELAFFSKH  404 (407)
Q Consensus       385 ~~~~~~r~~~~~~~~~~l~~  404 (407)
                      |++|++||+.|.++|+.|..
T Consensus       459 f~~~~~Rg~~F~~~v~~~~~  478 (480)
T PRK01438        459 FTDYAARGDAFAAAVRALLG  478 (480)
T ss_pred             ccCHHHHHHHHHHHHHHhhC
Confidence            99999999999999998754

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.8e-60  Score=482.04  Aligned_cols=382  Identities=30%  Similarity=0.434  Sum_probs=301.2

Q ss_pred             eeeeeccccCcCc----HHHHHHHhcCCceeeHHHHHHhhCC------CCCcEEEEecCCChHhHHHHHHHHHHhcCCce
Q 015421            3 MLWLFLLEFQLKA----TGLACLLQSGKRVMSELDFAAQVIP------RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus         3 ~~~~~~~~~~~~~----p~l~~a~~~~~~~l~~~~~~~~~~~------~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~   72 (407)
                      -+||+||+++++|    |++++|++.++|++++++++++.+.      ...++|+||||||||||++||+++|+..|+++
T Consensus        71 d~vv~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~  150 (498)
T PRK02006         71 DLVALSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKV  150 (498)
T ss_pred             CEEEECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCE
Confidence            3799999999998    9999999999999999999877651      13489999999999999999999999999999


Q ss_pred             eecccCCccchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcc
Q 015421           73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH  152 (407)
Q Consensus        73 ~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~  152 (407)
                      .+.||++.+..........   .....+++|+|+|+++++.... ++|+++|||||++||+++|+|+|+|+++|.++++ 
T Consensus       151 ~~~Gni~~~~~~~~~~~~~---~~~~~~~~V~E~ss~~l~~~~~-~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~-  225 (498)
T PRK02006        151 AVAGNISPAALDKLMEAID---AGALPDVWVLELSSFQLETTHT-LAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG-  225 (498)
T ss_pred             EEECCCCHHHHHHHHHhhc---cCCCCcEEEEEccHHHhCcccc-cCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC-
Confidence            8889988664432111110   0112378999999988866544 7999999999999999999999999999999998 


Q ss_pred             cCCCceEEEeCCChhhHHHHhcc-ccceEEeecCCC-----cccccccccceeEeccCCee-------------------
Q 015421          153 MVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPG-----VKIDTEAKTASFEVPAVGVV-------------------  207 (407)
Q Consensus       153 ~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-------------------  207 (407)
                        +++.+|+|.|||.+..+.... ..++++|+....     +..... ....+.+......                   
T Consensus       226 --~~~~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (498)
T PRK02006        226 --PRTVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRD-NGMAWLVEAEDRDAADPAPSRRRKKDAAPPPD  302 (498)
T ss_pred             --CCCEEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEec-CCeEEEEecCcccccccccccccccccccccc
Confidence              468999999999988776443 235677775311     111000 0000111100000                   


Q ss_pred             e---eee-ecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHH
Q 015421          208 S---QLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT  283 (407)
Q Consensus       208 ~---~~~-~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~  283 (407)
                      .   .+. ...++++|.||++|+++|+  +++..+|++++.+.++|++|++++||||++.. .+++.+|||||+|||+|+
T Consensus       303 ~~~~~~~~~~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~~-~~g~~~idDs~~tn~~s~  379 (498)
T PRK02006        303 IRLKRLMPADALRIRGLHNAANALAAL--ALARAIGLPAAPLLHGLREYRGEPHRVELVAT-IDGVDYYDDSKGTNVGAT  379 (498)
T ss_pred             cchhceeeHhhcCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCceEEEEE-ECCEEEEEcCCCCCHHHH
Confidence            0   111 1368999999999999999  89999999999999999999999999999863 578899999999999999


Q ss_pred             HHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhcc-CccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHH
Q 015421          284 CTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNH  362 (407)
Q Consensus       284 ~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~-~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~  362 (407)
                      .++++.++ +|+++|+|++.+..+      ++++.+.+. ..+.|+++|++...+.+.+...+  ..+..++++++|++.
T Consensus       380 ~~al~~~~-~~ii~IlGg~~~~~~------~~~~~~~l~~~~~~vi~~G~~~~~i~~~~~~~~--~~~~~~~~~~eAi~~  450 (498)
T PRK02006        380 VAALDGLA-QRVVLIAGGDGKGQD------FSPLAAPVARHARAVVLIGRDAPAIRAALAGTG--VPLVDAATLEEAVRA  450 (498)
T ss_pred             HHHHHhCC-CCEEEEEcCCCCCCC------HHHHHHHHHHhCCEEEEEcCCHHHHHHHHhhCC--CceEecCCHHHHHHH
Confidence            99999984 578999998754332      334444443 36899999999988888775433  235667899999999


Q ss_pred             HHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhhcc
Q 015421          363 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSKH  404 (407)
Q Consensus       363 a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l~~  404 (407)
                      +.+.+++||+||+.|+|+||++|++|++||..|.++|+.|+-
T Consensus       451 a~~~~~~gd~VLlsp~~~S~d~f~~~~~Rg~~F~~~v~~~~~  492 (498)
T PRK02006        451 AAALAQPGDAVLLSPACASLDMFRNYAHRAEVFRAAVEELAL  492 (498)
T ss_pred             HHHhcCCCCEEEEChhhcccccccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998853

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.2e-58  Score=464.41  Aligned_cols=377  Identities=28%  Similarity=0.474  Sum_probs=304.2

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~   83 (407)
                      +||+++.++++||++.+|++.|++++++++.+++.. + .++|+||||||||||++||+++|+..|.++.+.||+|.|+.
T Consensus        71 ~vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~ig~~~~  148 (450)
T PRK14106         71 LVVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPLI  148 (450)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcccHHHH
Confidence            688999999999999999999999999999999876 4 79999999999999999999999999988889999999886


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (407)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~  163 (407)
                      .....       ..+.+++|+|+|++.+.... .++|+++|||||+.||+++|||+|+|+++|.++++..++.+.+++|.
T Consensus       149 ~~~~~-------~~~~~~~v~E~~~~~~~~~~-~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vln~  220 (450)
T PRK14106        149 DAVEE-------YGEDDIIVAEVSSFQLETIK-EFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNY  220 (450)
T ss_pred             HHHhc-------CCCCCEEEEEcChhhhcccc-ccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEEeC
Confidence            54221       23568899999987654333 48999999999999999999999999999999999888889999999


Q ss_pred             CChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeee-eecccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 015421          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV  242 (407)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~  242 (407)
                      ||+.+..++...+.++++|+.+.............+.+...+..... ....++++|.||++|+++|+  +++..+|+++
T Consensus       221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAi--a~~~~lgi~~  298 (450)
T PRK14106        221 DDPRTRSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAAT--AAAYLLGISP  298 (450)
T ss_pred             CcHHHHHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHH--HHHHHcCCCH
Confidence            99988877766666778887542111000000112222222211111 12368999999999999999  8899999999


Q ss_pred             HHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhcc
Q 015421          243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN  322 (407)
Q Consensus       243 ~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~  322 (407)
                      +++.++|++|.+++||||.+.. .++..+|+|+|||||+|++++++.+.. ++++|+|.+. ++     ..++++...+.
T Consensus       299 ~~i~~~L~~~~~~~gR~e~i~~-~~~~~vi~D~~ahNP~s~~~~l~~l~~-~~i~v~g~~~-~~-----k~~~~~~~~l~  370 (450)
T PRK14106        299 DVIANTLKTFKGVEHRIEFVAE-INGVKFINDSKGTNPDAAIKALEAYET-PIVLIAGGYD-KG-----SDFDEFAKAFK  370 (450)
T ss_pred             HHHHHHHHhCCCCCcceEEEee-ECCEEEEeCCCccCHHHHHHHHHhCCC-CeEEEeCCcC-CC-----CCHHHHHHHHH
Confidence            9999999999999999999852 456889999889999999999999853 6788887662 22     13556666554


Q ss_pred             C-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhh
Q 015421          323 H-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFF  401 (407)
Q Consensus       323 ~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~  401 (407)
                      . .+.++++|..+..+.+.+...+. ..+.++++++++++.+.+.++++|+||+++.+.++++|++|++||+.|.++|..
T Consensus       371 ~~~~~vi~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~d~ilv~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (450)
T PRK14106        371 EKVKKLILLGETAQEIAEAARKYGF-DNILFAETLEEAVKKAYEIAKPGDVVLLSPACASWDMFKNFEERGRLFKELVLE  449 (450)
T ss_pred             hhCCEEEEEcCCHHHHHHHHhhCCC-CcEEEeCCHHHHHHHHHHhCCCCCEEEEChhhhccccccCHHHHHHHHHHHHHh
Confidence            3 68888899988888887754432 134567899999999998889999999999999999999999999999999864

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.8e-58  Score=451.80  Aligned_cols=344  Identities=24%  Similarity=0.362  Sum_probs=277.0

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS   83 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~   83 (407)
                      +||+||+++++||++++|++    ++++++++++..   .++|+||||||||||++|++++|+..|.  ..+||+|.|++
T Consensus        57 ~vv~sp~i~~~~~~~~~a~~----i~~~~e~~~~~~---~~~i~ITGT~GKTTTt~ml~~iL~~~g~--~~~gniG~p~~  127 (401)
T PRK03815         57 LEIPSPGIPPSHPLIQKAKN----LISEYDYFYDVM---PFSIWISGTNGKTTTTQMTTHLLEDFGA--VSGGNIGTPLA  127 (401)
T ss_pred             EEEECCCCCCCCHHHHHHHH----HhhHHHHHHHhc---CCEEEEECCCcHHHHHHHHHHHHHHCCC--cEEEEecHhHH
Confidence            69999999999999999987    799999988765   3499999999999999999999999984  35889999987


Q ss_pred             hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421           84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (407)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~  163 (407)
                      .  +        ..+.+++|+|+|+.+++... .++|+++|||||++||+++|+|+|+|+++|.+|++.+++++.+|+|.
T Consensus       128 ~--~--------~~~~~~~V~E~ss~~~~~~~-~~~p~iavitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n~  196 (401)
T PRK03815        128 E--L--------DKNAKIWVLETSSFTLHYTN-KAKPNIYLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILPK  196 (401)
T ss_pred             h--c--------CCCCCEEEEECChHHhhCCc-cCCCcEEEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEec
Confidence            5  2        23458899999987765544 37999999999999999999999999999999999998899999999


Q ss_pred             CChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHH
Q 015421          164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE  243 (407)
Q Consensus       164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~  243 (407)
                      ||+...     ...++++|+...+.      . ..+.+..         ..+.+.+. +++|+++|+  +++..+|+  +
T Consensus       197 dd~~~~-----~~~~~~~fg~~~~~------~-~~~~~~~---------~~~~~~~~-~~~NalaA~--a~a~~~G~--~  250 (401)
T PRK03815        197 KFKNTP-----TKAQKIFYEDEEDL------A-EKFGIDS---------EKINFKGP-FLLDALLAL--AVYKILFD--E  250 (401)
T ss_pred             cccccc-----cCCcEEEEecCCcc------c-cceeEeh---------HhcCCchH-HHHHHHHHH--HHHHHhCc--H
Confidence            998632     12356677632110      0 0111111         12334454 499999999  89999994  5


Q ss_pred             HHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhccC
Q 015421          244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH  323 (407)
Q Consensus       244 ~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~  323 (407)
                      .+.++|++|+|+++|||++. ..+++.+||||||+||+|+.++++.++++|+++|+|+. +++     ..++++++.+..
T Consensus       251 ~~~~~L~~f~~~~~R~e~~~-~~~gv~~idDs~~tn~~a~~~al~~~~~~~ii~IlGG~-~k~-----~~~~~l~~~~~~  323 (401)
T PRK03815        251 LDYERLNAFKIGKHKLEEFR-DKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGD-DKG-----VDLTPLFEFMKN  323 (401)
T ss_pred             HHHHHHHhCCCCCceEEEEE-EECCEEEEECCCCCCHHHHHHHHHhCCCCCEEEEECCC-CCC-----CCHHHHHHHHHh
Confidence            56678999999999999986 35889999999999999999999998656789999953 222     245678887754


Q ss_pred             c-cEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhh
Q 015421          324 H-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFS  402 (407)
Q Consensus       324 ~-~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l  402 (407)
                      . ..++++|+....+.+.+...+  ..+..+++.+++++.+.+.+++||+||++|||.|||+|+||++||..|.++|+.|
T Consensus       324 ~~~~v~~~G~~~~~~~~~~~~~~--~~~~~~~~~e~av~~~~~~~~~gdvVLlSPa~aSfd~f~ny~~RG~~F~~~v~~l  401 (401)
T PRK03815        324 LNIELYAIGSNTEKIQALAKEFN--IKAFVCEFLEKAVEEIKKVLKQNEVALLSPAAASLDQFKSYKERGEKFKAFVLKL  401 (401)
T ss_pred             hCcEEEEECCCHHHHHHHHhcCC--CeEEEeCCHHHHHHHHHHhCCCCCEEEeChhhhccccccCHHHHHHHHHHHHHhC
Confidence            2 248899998877777664332  2344567899999999988999999999999999999999999999999999865

>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed

Probab=100.00  E-value=8.4e-57  Score=449.55  Aligned_cols=365  Identities=18%  Similarity=0.250  Sum_probs=275.6

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc----CC
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG   79 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g   79 (407)
                      .||++..+++++|.+.-  ++....++.++..++.. .+.++|+||||||||||++||+++|+..|.++.+.||    +|
T Consensus        64 ~vv~~~~~~~~~p~i~v--~d~~~al~~la~~~~~~-~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~t~gn~n~~~G  140 (453)
T PRK10773         64 ALLVSRPLDIDLPQLVV--KDTRLAFGQLAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNNDIG  140 (453)
T ss_pred             EEEEecCcCCCCCEEEE--CCHHHHHHHHHHHHHhc-CCCCEEEEcCCCchHHHHHHHHHHHHhcCcccccCccccCCcc
Confidence            35555555445554321  11112344444333322 2468999999999999999999999999988778777    56


Q ss_pred             ccchhhhhhcccCCCCCCCCcEEEEEecc---cccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCC
Q 015421           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT  156 (407)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~g~---~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~  156 (407)
                      .|.+....        .++++++|+|+|+   ++++.....++|+++|||||++||+++|+|+|+|+++|.+|++.++++
T Consensus       141 ~~~~~~~~--------~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~  212 (453)
T PRK10773        141 VPLTLLRL--------TPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN  212 (453)
T ss_pred             cccHHhcC--------CCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCC
Confidence            66553322        4567899999995   455545556899999999999999999999999999999999988888


Q ss_pred             ceEEEeCCChhhHHHHhcccc-ceEEeecCC----Ccccc---cccccceeEeccCCeeeeeeecccCCCChhHHHHHHH
Q 015421          157 KLGLLPFGNQHLNEAIKGHRF-NLAWIGAFP----GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV  228 (407)
Q Consensus       157 ~~~v~n~dd~~~~~~~~~~~~-~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~  228 (407)
                      +.+|+|.|||....+...... .+.+|+...    ++...   .......|.+...+..   ..+.+|++|.||++|+++
T Consensus       213 g~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~---~~~~l~l~G~hnv~Nala  289 (453)
T PRK10773        213 GIAIMNADSNDWLNWQSVIGSKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGS---VDVLLPLPGRHNIANALA  289 (453)
T ss_pred             CEEEEECCcHhHHHHHHHhcCCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCce---EEEEecCCcHhHHHHHHH
Confidence            999999999987766543322 456677431    11111   0111112222211111   124789999999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEECCCCCCC
Q 015421          229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVL  306 (407)
Q Consensus       229 A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~g~~~~~~  306 (407)
                      |+  +++..+|++++.|.++|++|++++||||.+.. .++.+||||+|||||+|++++++.+.  ++|+++|+|+|.|+|
T Consensus       290 Ai--a~a~~lGi~~~~i~~~L~~~~~~~gR~e~v~~-~~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~elG  366 (453)
T PRK10773        290 AA--ALAMSVGATLDAVKAGLANLKAVPGRLFPIQL-AEGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMAELG  366 (453)
T ss_pred             HH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEEEC-CCCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChhhcc
Confidence            99  89999999999999999999999999999853 46789999999999999999998874  357899999999999


Q ss_pred             CCCCCcchHhhhhhcc--CccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCC--EEEEcCCCCCc
Q 015421          307 NGQESNGFEKLIEPLN--HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD--AIVLSPGCASF  382 (407)
Q Consensus       307 ~~~~~~~~~~~~~~l~--~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd--~vL~~~G~~s~  382 (407)
                      ..+.+ .|+++++.+.  ..|.++++|+.+..+.+..   +.  . .+++|.+++.+.+...+++||  +||+| |    
T Consensus       367 ~~~~~-~h~~~~~~~~~~~~d~v~~~G~~~~~~~~~~---~~--~-~~~~~~~~~~~~l~~~~~~gd~~~vL~K-g----  434 (453)
T PRK10773        367 AESEA-CHRQVGEAAKAAGIDKVLSVGKLSHAISEAS---GV--G-EHFADKTALIARLKALLAEHQVITILVK-G----  434 (453)
T ss_pred             hHHHH-HHHHHHHHHHHcCCCEEEEEChhHHHHHHhc---CC--C-eeECCHHHHHHHHHHhhcCCCceEEEEE-e----
Confidence            88744 7889998875  3799999998776665531   11  1 346899999999999999999  58887 5    


Q ss_pred             ccccChhhhhHHHHHHHhhhcc
Q 015421          383 DEFRNFEHRGMVFQELAFFSKH  404 (407)
Q Consensus       383 ~~~~~~~~r~~~~~~~~~~l~~  404 (407)
                             ||++.||++++.|++
T Consensus       435 -------sr~~~le~i~~~l~~  449 (453)
T PRK10773        435 -------SRSAAMEEVVRALQE  449 (453)
T ss_pred             -------CCcCCHHHHHHHHHH
Confidence                   799999999999965

>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=8.5e-57  Score=439.85  Aligned_cols=350  Identities=22%  Similarity=0.291  Sum_probs=285.2

Q ss_pred             hcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc----CCccchhhhhhcccCCCCCCC
Q 015421           23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPK   98 (407)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~   98 (407)
                      .+.+..++++...++.. .+.++|+||||+|||||++|++++|+..|..+.+.||    +|.|++..+.        ..+
T Consensus        84 ~d~~~al~~la~~~~~~-~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~--------~~~  154 (451)
T COG0770          84 LDTLEALGKLAKAYRQK-FNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRL--------PAD  154 (451)
T ss_pred             HHHHHHHHHHHHHHHHh-cCCcEEEEeCCCCcHHHHHHHHHHHhhcCeEecCCCccCccccchhHHHhC--------CCc
Confidence            33334555555555543 4789999999999999999999999999887777777    6888888765        567


Q ss_pred             CcEEEEEecc---cccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhcc
Q 015421           99 FQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH  175 (407)
Q Consensus        99 ~~~~V~E~g~---~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~  175 (407)
                      +|++|+|+|.   |+++.+..+.+|+++|||||+.+|+++|||.|.|+++|.+|+..+++++.+|+|.|++.....+...
T Consensus       155 ~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~  234 (451)
T COG0770         155 TEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKI  234 (451)
T ss_pred             ccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHHhhc
Confidence            8999999994   5677777778999999999999999999999999999999999999999999999999977776554


Q ss_pred             -ccceEEeecCC--Cccc---ccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 015421          176 -RFNLAWIGAFP--GVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI  249 (407)
Q Consensus       176 -~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L  249 (407)
                       ..++++|+...  ++..   ..+.....|.....+.+.   .+.+|++|+||+.|+++|+  ++++.+|+++++|+++|
T Consensus       235 ~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~---~~~l~~~G~hn~~NalaA~--a~a~~lG~~~e~i~~~L  309 (451)
T COG0770         235 GNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEA---EFELPLPGRHNVTNALAAA--ALALELGLDLEEIAAGL  309 (451)
T ss_pred             CCCcEEEEcCCCCCceeeEEEEEcCCceEEEEEecCceE---EEEecCCcHhHHHHHHHHH--HHHHHcCCCHHHHHHHH
Confidence             46788888541  1111   111112233332222111   3579999999999999999  99999999999999999


Q ss_pred             hcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc---CCCcEEEEECCCCCCCCCCCCcchHhhhhhccC--c
Q 015421          250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH--H  324 (407)
Q Consensus       250 ~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~--~  324 (407)
                      +.+.+++||++++. ..++.++|||+||+||+||+++++.+   ++++.++|+|+|.|+|..+.+ .|+++++.+..  .
T Consensus       310 ~~~~~~~gR~~~~~-~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~-~H~~v~~~~~~~~~  387 (451)
T COG0770         310 KELKPVKGRLEVIL-LANGKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESEE-LHEEVGEYAVEAGI  387 (451)
T ss_pred             HhcCCCCccceeEe-cCCCcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChhhhCccHHH-HHHHHHHHHHhcCc
Confidence            99999999999544 47889999999999999999998876   344449999999999977744 78889988764  6


Q ss_pred             cEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhhcc
Q 015421          325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSKH  404 (407)
Q Consensus       325 ~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l~~  404 (407)
                      |.++++|+..+.+.+.+...     ..++.+.++.++.+...+++||+||++ |           ||++.++++++.|+.
T Consensus       388 d~v~~~G~~~~~i~~~~~~~-----~~~f~~~~~l~~~l~~~l~~gd~vLvK-g-----------Sr~~~le~vv~~l~~  450 (451)
T COG0770         388 DLVFLVGELSKAIAEALGNK-----GIYFADKEELITSLKALLRKGDVVLVK-G-----------SRGMKLEKVVDALLG  450 (451)
T ss_pred             eEEEEEccchHHHHHhcCCC-----eEecCCHHHHHHHHHHhcCCCCEEEEE-c-----------CccccHHHHHHHHhc
Confidence            89999999888888876432     567788889999999999999999998 4           899999999999975


Q ss_pred             c
Q 015421          405 D  405 (407)
Q Consensus       405 ~  405 (407)
                      +
T Consensus       451 ~  451 (451)
T COG0770         451 K  451 (451)
T ss_pred             C
Confidence            4

>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.4e-55  Score=422.00  Aligned_cols=357  Identities=20%  Similarity=0.276  Sum_probs=289.5

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCce-e-ecccCCc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-F-VGGNLGN   80 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~-~-~~g~~g~   80 (407)
                      ..||+|++++++|||+++|+++++|+++|+++++.++ +....|+|+||+|||||++||+++|.+.|+++ + .+|.+..
T Consensus        68 ~~VV~s~Ai~~~NpEi~~A~e~~ipi~~r~e~Laelm-~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~  146 (459)
T COG0773          68 DVVVVSNAIKEDNPEIVAALERGIPVISRAEMLAELM-RFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKN  146 (459)
T ss_pred             ceEEEecccCCCCHHHHHHHHcCCCeEcHHHHHHHHH-hCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECccccc
Confidence            3599999999999999999999999999999999998 56889999999999999999999999999875 3 4544433


Q ss_pred             cchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEE
Q 015421           81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL  160 (407)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v  160 (407)
                      .-+...         ....++.|+|+++++-.++  .++|+++|+|||..||+|+|++++++.+++..+++.++..|.+|
T Consensus       147 ~g~na~---------~g~~~~fV~EADEsD~sFl--~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v  215 (459)
T COG0773         147 FGTNAR---------LGSGDYFVAEADESDSSFL--HYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAV  215 (459)
T ss_pred             CCcccc---------cCCCceEEEEecccccccc--cCCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceEE
Confidence            222222         2233789999998775554  37999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHhc-cccceEEeecCC--Cccc---ccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHH
Q 015421          161 LPFGNQHLNEAIKG-HRFNLAWIGAFP--GVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (407)
Q Consensus       161 ~n~dd~~~~~~~~~-~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~  234 (407)
                      +|.|||.++++... .+.++++||.+.  ++..   ..+.....|.+...+.  .+..+.++++|+||+.|+++|+  ++
T Consensus       216 ~~~dd~~l~~l~~~~~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~--~~~~~~l~~pG~HNvlNAlaai--a~  291 (459)
T COG0773         216 VCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGE--ELGEVKLPLPGRHNVLNALAAI--AV  291 (459)
T ss_pred             EECCCHHHHHHHhcccCCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCc--eeEEEEEcCCchhhHHHHHHHH--HH
Confidence            99999999997765 567789999875  3322   2223333344443443  3445689999999999999999  99


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc----C-CCcEEEEECCCCCCCCCC
Q 015421          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----K-GHKCVILLGGQAKVLNGQ  309 (407)
Q Consensus       235 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~-~~~~i~V~g~~~~~~~~~  309 (407)
                      |+.+|++.+.|.++|++|+++.+|||+.. ..+++++|||| +|.|..+.++|+.+    + ++|+++||.+.....   
T Consensus       292 a~~~Gi~~~~i~~aL~~F~GvkRRfe~~g-~~~~~~viDDY-aHHPtEI~aTL~aaR~~~~~~~rIvaifQPHrySR---  366 (459)
T COG0773         292 ARELGIDPEAIAEALASFQGVKRRFELKG-EVNGVTVIDDY-AHHPTEIKATLAAARQKVPGGKRIVAVFQPHRYSR---  366 (459)
T ss_pred             HHHcCCCHHHHHHHHHhCCCcceeeEEee-eECCEEEEecC-CCCHHHHHHHHHHHHHhcCCCceEEEEECCCchHh---
Confidence            99999999999999999999999999887 47889999995 99999999988766    3 378999998875432   


Q ss_pred             CCcchHhhhhhccCccEEEEe-----CCC-------hHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcC
Q 015421          310 ESNGFEKLIEPLNHHRCVITF-----GYS-------GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP  377 (407)
Q Consensus       310 ~~~~~~~~~~~l~~~~~v~~~-----g~~-------~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~  377 (407)
                      ....++++++.+..+|.|++.     |+.       ...+.+.+++.+   .+. +++.++..+.+.+.+++||+||+. 
T Consensus       367 t~~~~~dF~~~l~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~~~---~~~-~~~~~~~~~~l~~~~~~gD~il~m-  441 (459)
T COG0773         367 TRDLLDDFAKALSDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQPG---HVD-VPDLDDLVELLAKVAQPGDVILFM-  441 (459)
T ss_pred             HHHHHHHHHHHHhcCCEEEEecccccCCCCCcCCccHHHHHHHhhcCC---ccc-CCCHHHHHHHHHhhCCCCCEEEEe-
Confidence            334788899998778999887     233       345666665543   222 689999999999999999999885 


Q ss_pred             CCCCcccc
Q 015421          378 GCASFDEF  385 (407)
Q Consensus       378 G~~s~~~~  385 (407)
                      |+|++..+
T Consensus       442 GAGdi~~~  449 (459)
T COG0773         442 GAGDIGKI  449 (459)
T ss_pred             cCCcHHHH
Confidence            89988654

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.4e-55  Score=436.99  Aligned_cols=351  Identities=28%  Similarity=0.456  Sum_probs=277.6

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhC-CCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCcc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~-~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (407)
                      -+||.++.++++||.++.|+++|++++++.+++.+.. ..+.++|+||||||||||++||+++|+..|.++++.||+|.|
T Consensus        61 dlvV~s~gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p  140 (418)
T PRK00683         61 DLVVRSPGIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIP  140 (418)
T ss_pred             CEEEECCCCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHH
Confidence            4789999999999999999999999999999866542 125689999999999999999999999999988999999999


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEecccccccCCc-cccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEE
Q 015421           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL  160 (407)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~-~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v  160 (407)
                      +...          ..+.+++|+|+|++++..... ...|+++|||||++||+++|+|+|+|+++|.+++..+.+     
T Consensus       141 ~l~~----------~~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~s~e~y~~aK~~i~~~~~~-----  205 (418)
T PRK00683        141 ILDG----------MQQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLRN-----  205 (418)
T ss_pred             HHHH----------hhcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCCCHHHHHHHHHHHHHhhhC-----
Confidence            7432          123578999999987765433 234599999999999999999999999999999985432     


Q ss_pred             EeCCChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHH-cC
Q 015421          161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IG  239 (407)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~-lg  239 (407)
                        .|+....        ...+++.+  .. ......... .. .+       ..++++|.||++|+++|+  +++.. +|
T Consensus       206 --~~~~~~~--------~~~~~~~~--~~-~~~~~~~~~-~~-~~-------~~~~~~g~hn~~Na~aA~--a~~~~l~g  261 (418)
T PRK00683        206 --PDDLWVG--------DERSYGHS--YL-EYVQEIMRL-LD-KG-------SALKPLYLHDRYNYCAAY--ALANEVFP  261 (418)
T ss_pred             --ccccccc--------ccCCcCce--ee-cCcchhhhh-hc-cc-------cccCCCccchHHHHHHHH--HHHHHhcC
Confidence              2222110        00112210  00 000000000 00 01       246789999999999999  78888 69


Q ss_pred             CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhh
Q 015421          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE  319 (407)
Q Consensus       240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~  319 (407)
                      ++.++|.++|++|++++||||++. ..++..+|||+||+||+|+.++++.+. +|+++|+|+|.+.++      +.++++
T Consensus       262 ~~~~~i~~~l~~~~~~~~R~e~v~-~~~g~~~i~Ds~~t~~~s~~~al~~~~-~~~i~vlG~~~~~~d------~~~l~~  333 (418)
T PRK00683        262 ISEESFLEAVATFEKPPHRMEYLG-EKDGVHYINDSKATTVSAVEKALLAVG-NQVIVILGGRNKGCD------FSSLLP  333 (418)
T ss_pred             CCHHHHHHHHHhCCCCCCceEEEe-ecCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCCC------HHHHHH
Confidence            999999999999999999999996 357899999999999999999999864 578999998766544      335666


Q ss_pred             hccC-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHH
Q 015421          320 PLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL  398 (407)
Q Consensus       320 ~l~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~  398 (407)
                      .+.+ .+.++++|++...+.+.+... .  .+..++++++|++.+.+.+++||+||+.|||+||++|++|+.||..|.++
T Consensus       334 ~~~~~~~~v~~~G~~~~~i~~~l~~~-~--~~~~~~~~~~a~~~~~~~~~~gd~VLlsp~~~s~d~f~~~~~RG~~F~~~  410 (418)
T PRK00683        334 VLRQTAKHVVAMGECRQEIAQALSEK-F--PLTVVKDLQEAVSCAQEIAQPGDVILLSPGCASFDQFRSFEERGAMFKQL  410 (418)
T ss_pred             HHHHhCCEEEEECCCHHHHHHHHhcC-C--CEEEeCCHHHHHHHHHHhCCCCCEEEECchhcccccccCHHHHHHHHHHH
Confidence            5543 688999999988888877542 1  34567899999999999999999999999999999999999999999999


Q ss_pred             Hhhhc
Q 015421          399 AFFSK  403 (407)
Q Consensus       399 ~~~l~  403 (407)
                      |+.++
T Consensus       411 v~~~~  415 (418)
T PRK00683        411 VGMME  415 (418)
T ss_pred             HHHHh
Confidence            99775

>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

Probab=100.00  E-value=9e-56  Score=438.42  Aligned_cols=328  Identities=22%  Similarity=0.291  Sum_probs=259.0

Q ss_pred             CCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc----CCccchhhhhhcccCCCCCCCCcEEEEEec-ccccc--cC
Q 015421           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQME--IP  114 (407)
Q Consensus        42 ~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g-~~~l~--~~  114 (407)
                      +.++|+||||||||||++||+++|+..|..+.+.||    +|.|.+...        ...+++++|+|+| ++..+  ..
T Consensus        73 ~~~vI~VTGTnGKTTt~~ll~~iL~~~g~~~~t~gn~n~~ig~p~~~l~--------~~~~~~~~VlE~g~s~~g~~~~~  144 (417)
T TIGR01143        73 SGKVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPLTLLR--------APGDHDYAVLEMGASHPGEIAYL  144 (417)
T ss_pred             CCCEEEEcCCCchhHHHHHHHHHHhccCcEecCCCcCCCccchhHHHhc--------CCCCCeEEEEEeCCCCCCcHHHH
Confidence            468999999999999999999999999987677777    566665432        2567899999998 44333  23


Q ss_pred             CccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccc-cceEEeecCC-Ccccc-
Q 015421          115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-FNLAWIGAFP-GVKID-  191 (407)
Q Consensus       115 ~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~-~~~~~~~~~~-~~~~~-  191 (407)
                      ...++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||....+..... .++++|+... ++... 
T Consensus       145 ~~~~~p~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  224 (417)
T TIGR01143       145 AEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKRLPNKAILSFGFEGGDFSAAD  224 (417)
T ss_pred             hCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHhccCCcEEEECCCCCcEEEEE
Confidence            33479999999999999999999999999999999998888899999999998877765433 4567777532 11110 


Q ss_pred             --ccccc-ceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCC
Q 015421          192 --TEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG  268 (407)
Q Consensus       192 --~~~~~-~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~  268 (407)
                        ..... ..|.+...+...   .+.++++|.||++|+++|+  +++..+|++++.|.++|++|++++||||+.  ..++
T Consensus       225 i~~~~~~~~~~~~~~~~~~~---~~~~~l~G~hn~~N~laAi--a~~~~lGi~~~~i~~~l~~~~~~~gR~e~~--~~~~  297 (417)
T TIGR01143       225 ISYSALGSTGFTLVAPGGEF---EVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEGLAELKLVKGRFEIQ--TKNG  297 (417)
T ss_pred             EEEcCCCCEEEEEEeCCceE---EEEccCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEE--cCCC
Confidence              00001 122222111111   2468999999999999999  899999999999999999999999999943  3678


Q ss_pred             EEEEEcCCCCCHHHHHHHHhccCC--CcEEEEECCCCCCCCCCCCcchHhhhhhccC--ccEEEEeCCChHHHHHHHHhC
Q 015421          269 VTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVITFGYSGVLIWKTLVNN  344 (407)
Q Consensus       269 ~~iidD~~a~np~s~~~al~~~~~--~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~--~~~v~~~g~~~~~~~~~l~~~  344 (407)
                      ..+|||+|||||+|++++|+.+..  +|+++|+|+|.+.|+++. ..|.++++.+..  .|.++++|+++..+.+.+.. 
T Consensus       298 ~~vidDsya~np~s~~~al~~l~~~~~r~i~VlG~~~e~G~~~~-~~~~~l~~~~~~~~~d~vi~~g~~~~~~~~~~~~-  375 (417)
T TIGR01143       298 LTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAELGEYSE-ELHAEVGRYANSLGIDLVFLVGEEAAVIYDSLGC-  375 (417)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEEcCchhcChHHH-HHHHHHHHHHHHcCCCEEEEECHHHHHHHHhccc-
Confidence            999999999999999999998853  589999999999888774 357778877743  49999999998777765421 


Q ss_pred             CCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhh
Q 015421          345 GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFS  402 (407)
Q Consensus       345 ~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l  402 (407)
                          ...++++.+++.+.+.+.+++||+||++ |           ||++.||++++.|
T Consensus       376 ----~~~~~~~~~~~~~~l~~~~~~~d~VLlk-G-----------Sr~~~le~~~~~~  417 (417)
T TIGR01143       376 ----KGFHFADKDELLAFLKLELGEGDVVLVK-G-----------SRSVKLEKVVEAL  417 (417)
T ss_pred             ----CcEEECCHHHHHHHHHHhcCCCCEEEEE-e-----------CCcCcHHHHHhhC
Confidence                2345688999999999989999999997 4           7999999999865

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.

>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=2.6e-55  Score=441.42  Aligned_cols=336  Identities=18%  Similarity=0.172  Sum_probs=262.5

Q ss_pred             CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc----CCccchhhhhhcccCCCCCCCCcEEEEEec-ccccc--c
Q 015421           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQME--I  113 (407)
Q Consensus        41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g-~~~l~--~  113 (407)
                      .+.++|+||||||||||++||+++|+..|.++.+.|+    +|.|.+...+        ..+++++|+|+| ++..+  .
T Consensus       106 ~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~n~~iG~p~~l~~~--------~~~~~~~V~E~g~s~~~e~~~  177 (479)
T PRK14093        106 LEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFNNHWGVPLSLARC--------PADARFAVFEIGMNHAGEIEP  177 (479)
T ss_pred             cCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccCCCccchhHHHHcC--------CCCCcEEEEEeCCCCCchHHH
Confidence            4678999999999999999999999999987766665    4555543322        356789999999 44433  3


Q ss_pred             CCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccc----cceEEeecCCCcc
Q 015421          114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR----FNLAWIGAFPGVK  189 (407)
Q Consensus       114 ~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~----~~~~~~~~~~~~~  189 (407)
                      ....++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||....+.....    .++++|+......
T Consensus       178 ~~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~l~~~~~~~~~~~vi~~g~~~~~~  257 (479)
T PRK14093        178 LVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAASARAAGIARIVSFGADEKAD  257 (479)
T ss_pred             HhcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHHHHHHhhhccCCcEEEEeCCCCcc
Confidence            344589999999999999999999999999999999998888899999999998877654321    2577887542211


Q ss_pred             c--cc---ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEee
Q 015421          190 I--DT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR  264 (407)
Q Consensus       190 ~--~~---~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~  264 (407)
                      +  ..   ......+.+...+..   ..+.++++|.||++|+++|+  +++..+|+++++|.++|++|++++||++.+..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~l~~~~~~~gR~~~~r~  332 (479)
T PRK14093        258 ARLLDVALHADCSAVHADILGHD---VTYKLGMPGRHIAMNSLAVL--AAAELAGADLALAALALSQVQPAAGRGVRHTL  332 (479)
T ss_pred             EEEEEEEEcCCceEEEEEECCce---EEEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCcCCcceEEEe
Confidence            1  10   001112222211111   13578999999999999999  89999999999999999999999999998642


Q ss_pred             e--cCCEEEEEcCCCCCHHHHHHHHhccC------CCcEEEEECCCCCCCCCCCCcchHhhhhhcc--CccEEEEeCCCh
Q 015421          265 D--IQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITFGYSG  334 (407)
Q Consensus       265 ~--~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~~~v~~~g~~~  334 (407)
                      .  .++.+||||+|||||+||+++|+.+.      ++|+|+|||+|.|+|..+. ..|+++++.+.  ..|.|+++|+..
T Consensus       333 ~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~-~~h~~~~~~~~~~~~d~v~~~G~~~  411 (479)
T PRK14093        333 EVGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGP-ELHRGLAEAIRANAIDLVFCCGPLM  411 (479)
T ss_pred             ecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHH-HHHHHHHHHHHHcCCCEEEEEchhH
Confidence            1  34589999999999999999998763      3589999999999998764 47889999886  479999999877


Q ss_pred             HHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhhccc
Q 015421          335 VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSKHD  405 (407)
Q Consensus       335 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l~~~  405 (407)
                      ..+.+.+...   ....++++.+++.+++...+++||+||++ |           ||++.||++++.|+++
T Consensus       412 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~gd~vL~k-G-----------Sr~~~le~i~~~l~~~  467 (479)
T PRK14093        412 RNLWDALSSG---KRGGYAEDAAALESQVVAAIRAGDVIMVK-G-----------SLGSRMKTIVTALEKR  467 (479)
T ss_pred             HHHHHhhccc---ccceeeCCHHHHHHHHHHhcCCCCEEEEE-c-----------CCcCCHHHHHHHHHhh
Confidence            7776654321   11135689999999999999999999997 4           8999999999999764

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=100.00  E-value=3.3e-54  Score=431.05  Aligned_cols=360  Identities=19%  Similarity=0.290  Sum_probs=279.5

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCC--ceeecccCCcc
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI--EAFVGGNLGNP   81 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~--~~~~~g~~g~~   81 (407)
                      +||+||+++++||++++|++.++|++++++++++.. ++.++|+||||||||||++||+++|+..|.  .+..+|+++.+
T Consensus        61 ~vV~spgi~~~~p~~~~a~~~~i~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~  139 (448)
T TIGR01082        61 VVVVSAAIKDDNPEIVEAKERGIPVIRRAEMLAELM-RFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVKEA  139 (448)
T ss_pred             EEEECCCCCCCCHHHHHHHHcCCceEeHHHHHHHHH-hcCcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcccccC
Confidence            699999999999999999999999999999999887 356899999999999999999999999997  45678888887


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhc-cCCCHHHHHHHHHHhhcccCCCceEE
Q 015421           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE-RHKTMKNYALTKCHLFSHMVNTKLGL  160 (407)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~-~~~t~e~i~~~K~~i~~~~~~~~~~v  160 (407)
                      ......         ...+++|+|+|++++..  ..++|+++|||||++||++ +|+|+|+|+++|.++++.+++++.+|
T Consensus       140 ~~~~~~---------~~~~~~V~E~s~~q~~~--~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~~V  208 (448)
T TIGR01082       140 GTNARL---------GSGEYLVAEADESDASF--LHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAV  208 (448)
T ss_pred             Cccccc---------CCCCEEEEECCCccchH--hhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCEEE
Confidence            654321         23578999999887654  3489999999999999999 88999999999999999887889999


Q ss_pred             EeCCChhhHHHHhccccceEEeecCC-C--cccc---cccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHH
Q 015421          161 LPFGNQHLNEAIKGHRFNLAWIGAFP-G--VKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (407)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~~~~~-~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~  234 (407)
                      +|.||+....+......++++|+... .  +...   .......|.+...+.  ......++++|.||++|+++|+  ++
T Consensus       209 ~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~G~hn~~N~~aA~--a~  284 (448)
T TIGR01082       209 ICADDPVLRELVPKATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGK--LYLEFTLNLPGRHNVLNALAAI--AV  284 (448)
T ss_pred             EECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEecCccHhHHHHHHHHH--HH
Confidence            99999998877654445667776531 1  1110   000011122211111  1123468899999999999999  88


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCC
Q 015421          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQE  310 (407)
Q Consensus       235 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~  310 (407)
                      +..+|++.+.|.++|++|++++||||++. ..+++.+||| |||||.++.++++.+.    .+|+++|+|+......   
T Consensus       285 ~~~lgi~~~~i~~~l~~f~~~~~R~e~~~-~~~gv~~i~D-~ahn~~~~~a~~~al~~~~~~~~ii~i~g~~~~~r~---  359 (448)
T TIGR01082       285 ALELGIDFEAILRALANFQGVKRRFEILG-EFGGVLLIDD-YAHHPTEIKATLKAARQGYPDKRIVVVFQPHRYSRT---  359 (448)
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCccceEEE-EeCCeEEEEc-CCCCHHHHHHHHHHHHHhcCCCeEEEEECCCCCccH---
Confidence            89999999999999999999999999986 3577899999 4999999998877763    3478899985221110   


Q ss_pred             CcchHhhhhhccCccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCC
Q 015421          311 SNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC  379 (407)
Q Consensus       311 ~~~~~~~~~~l~~~~~v~~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~  379 (407)
                      +..++++.+.+...|.++++           |...+.+.+.+.+.+. ..+..++++++|++.+.+.+++||+||+. |+
T Consensus       360 k~~~~~~~~~l~~~d~v~l~~~~~~~~~~~~g~~~~~i~~~~~~~~~-~~~~~~~~~~~a~~~a~~~a~~gD~VLl~-G~  437 (448)
T TIGR01082       360 RDLFDDFAKVLSDADELILLDIYAAGEEPINGIDGKSLARKITQLGK-IEPYFVPDLAELVEFLAAVLQSGDLILTM-GA  437 (448)
T ss_pred             HHHHHHHHHHHHhCCEEEEecccCCCCCCCCCCCHHHHHHHHhhcCC-CceEEeCCHHHHHHHHHHhcCCCCEEEEE-CC
Confidence            11345677766557777776           5566778887765321 23456789999999999999999999885 88


Q ss_pred             CCccccc
Q 015421          380 ASFDEFR  386 (407)
Q Consensus       380 ~s~~~~~  386 (407)
                      |++..+.
T Consensus       438 g~~~~~~  444 (448)
T TIGR01082       438 GDIIKLA  444 (448)
T ss_pred             CCHHHHH
Confidence            9887653

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=100.00  E-value=4.2e-54  Score=431.77  Aligned_cols=360  Identities=18%  Similarity=0.243  Sum_probs=274.2

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCc--eeecccCCcc
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNP   81 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~--~~~~g~~g~~   81 (407)
                      +||.||+++++||++++|++.++|++++++++++.. ++.++|+||||||||||++|++++|+..|+.  +..+|+++.+
T Consensus        69 ~vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~-~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~  147 (461)
T PRK00421         69 VVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELM-RFRTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAA  147 (461)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHH-ccCcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceeccC
Confidence            799999999999999999999999999999999876 3458999999999999999999999999964  4566765443


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEE
Q 015421           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (407)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~  161 (407)
                      .....         ..+.+++|+|+|+++...  ..++|+++|||||++||+++|+|+|+|+++|.+++..+++++.+|+
T Consensus       148 ~~~~~---------~~~~~~~V~E~ss~q~~~--~~~~p~vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~V~  216 (461)
T PRK00421        148 GTNAR---------LGNSDYFVAEADESDRSF--LKLHPDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVA  216 (461)
T ss_pred             Ccccc---------cCCCCEEEEECCCccchH--hhcCCCEEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence            22111         234688999999886533  2479999999999999999999999999999999988877889999


Q ss_pred             eCCChhhHHHHhccccceEEeecCC--Cccccc---ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHH
Q 015421          162 PFGNQHLNEAIKGHRFNLAWIGAFP--GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL  236 (407)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~  236 (407)
                      |.||+.+..+......++++|+...  ++....   ......|.+...+.  .+....++++|.||++|+++|+  +++.
T Consensus       217 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~l~l~G~h~~~N~~aA~--a~~~  292 (461)
T PRK00421        217 CGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGE--VLGDFTLPLPGRHNVLNALAAI--AVAL  292 (461)
T ss_pred             ECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCc--eEEEEEecCCcHHHHHHHHHHH--HHHH
Confidence            9999988887765556777777532  111110   00111222211111  1113468899999999999999  8899


Q ss_pred             HcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCCCc
Q 015421          237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESN  312 (407)
Q Consensus       237 ~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~  312 (407)
                      .+|++++.|.++|++|++++||||++. ..+++.+|+|+ +|||+++.++++.+.    ++|+++|+|......+   +.
T Consensus       293 ~lgv~~~~i~~~l~~f~~~~~R~e~~~-~~~g~~~i~D~-aHnp~~~~a~~~al~~~~~~~~i~~v~gp~~~~r~---kd  367 (461)
T PRK00421        293 ELGIDDEAIREALATFKGVKRRFEEKG-EVGGVVLIDDY-AHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSRT---RD  367 (461)
T ss_pred             HcCCCHHHHHHHHHhCCCCCcccEEEE-ecCCcEEEEeC-CCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCccH---HH
Confidence            999999999999999999999999996 35678899995 999999999887763    2678899983321111   11


Q ss_pred             chHhhhhhccCccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCC
Q 015421          313 GFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS  381 (407)
Q Consensus       313 ~~~~~~~~l~~~~~v~~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s  381 (407)
                      ....++..+...|.++++           +.+++.+.+.++..+  ..+..++++++|++.+.+.+++||+||++ |+|+
T Consensus       368 ~~~~~~~~l~~~d~vi~~~~~~~~e~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~~~a~~~a~~gD~vlv~-G~g~  444 (461)
T PRK00421        368 LLDEFAEALSDADEVILLDIYAAGEEPIGGVDSEDLARKIKRGH--RDPIFVPDLEDLAELLAEVLKPGDLVLTM-GAGD  444 (461)
T ss_pred             HHHHHHHHHHHCCEEEEcCccCCCCCCCCCCCHHHHHHHHhccC--CceEEeCCHHHHHHHHHHhcCCCCEEEEE-CCCC
Confidence            233466655446777775           334567777775422  24556789999999999999999999885 8888


Q ss_pred             cccccC
Q 015421          382 FDEFRN  387 (407)
Q Consensus       382 ~~~~~~  387 (407)
                      |+.+..
T Consensus       445 ~~~~~~  450 (461)
T PRK00421        445 ITKLAR  450 (461)
T ss_pred             HHHHHH
Confidence            876554

>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase

Probab=100.00  E-value=2.4e-53  Score=424.78  Aligned_cols=360  Identities=20%  Similarity=0.241  Sum_probs=267.0

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCce-----eeccc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-----FVGGN   77 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~-----~~~g~   77 (407)
                      -+||+||+++++||++++|++.++|++++++++++...+..++|+||||||||||++||+++|+..|.++     .+.||
T Consensus        62 d~vV~SpgI~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~gn  141 (448)
T TIGR01081        62 DLVVIGNAMKRGNPCVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGN  141 (448)
T ss_pred             CEEEECCCCCCCCHHHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCccccc
Confidence            3799999999999999999999999999999988753123449999999999999999999999999875     35788


Q ss_pred             CCccchhhhhhcccCCCCCCCCcEEEEEeccccccc---CCc--cccceEEEEecCChhhhccCCCHHHHHHHHHHhhcc
Q 015421           78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI---PNK--YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH  152 (407)
Q Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~---~~~--~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~  152 (407)
                      +|.|..   +         .+.+++|+|+|++++..   +..  .++|+++|||||++||+++|+|+|+|+++|.++++.
T Consensus       142 ~G~~~~---~---------~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~~  209 (448)
T TIGR01081       142 FGVSAR---L---------GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRT  209 (448)
T ss_pred             Cccccc---c---------CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccCCHHHHHHHHHHHHHh
Confidence            888863   1         13578999999876543   222  268999999999999999999999999999999998


Q ss_pred             cCCCceEEEeCCChhhHHHHhc-cccceEEeecCCCccccc-ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHH
Q 015421          153 MVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA  230 (407)
Q Consensus       153 ~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~  230 (407)
                      +++.+.+|+|.||+.+..+... ...++.+|+...++.... ......+.+...+..  ...+.++++|.||++|+++|+
T Consensus       210 ~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~Na~~A~  287 (448)
T TIGR01081       210 VPGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADGSHFDVLLDGEK--VGEVKWSLVGRHNMHNALMAI  287 (448)
T ss_pred             CCCCCEEEEeCCCHHHHHHHHhccCCCeEEECCCCCEEEEEEecCCcEEEEEECCce--eEEEEecCCcHHHHHHHHHHH
Confidence            7777899999999988765432 223455554322111100 001112222111111  112357899999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCC----CcEEEEECCCCCCC
Q 015421          231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG----HKCVILLGGQAKVL  306 (407)
Q Consensus       231 ~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~----~~~i~V~g~~~~~~  306 (407)
                        +++..+|++.+.+.++|++|.+++||||++. ..++..+|+|+ ||||+|++++++.++.    +|+++|+|++.+..
T Consensus       288 --a~~~~lgi~~~~i~~~L~~~~~~~~R~e~~~-~~~g~~ii~D~-ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~~~~  363 (448)
T TIGR01081       288 --AAARHVGVAIEDACEALGSFVNAKRRLELKG-EANGITVYDDF-AHHPTAIEATLQGLRQKVGGARILAVLEPRSNTM  363 (448)
T ss_pred             --HHHHHcCCCHHHHHHHHHhCCCCCcceEEEE-ecCCeEEEEeC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCcchh
Confidence              8889999999999999999999999999985 34678999997 9999999999998852    36789999663211


Q ss_pred             CCCCCcchHhhhhhccCccEEEEeCCCh--HHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCccc
Q 015421          307 NGQESNGFEKLIEPLNHHRCVITFGYSG--VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE  384 (407)
Q Consensus       307 ~~~~~~~~~~~~~~l~~~~~v~~~g~~~--~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~  384 (407)
                      ..  ....+++...+...|.++++|...  ..+.+.+...+  ..+..+++++++++.+.+.+++||+||+. |+|+++.
T Consensus       364 ~l--g~~~~~l~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~a~~gd~VLv~-gag~~~~  438 (448)
T TIGR01081       364 KL--GVHKDDLAPSLGRADQVFLYQPGQIPWDVAEVAAQCV--QPANVSADFDAFVAMIVKNAQPGDHILVM-SNGGFGG  438 (448)
T ss_pred             hh--hhHHHHHHHHHHhCCEEEEcCCCCCccCHHHHHHhcC--CCeEEcCCHHHHHHHHHHhCCCCCEEEEE-CCCCHHH
Confidence            00  012333444444478888886542  22444443321  13456689999999999999999999885 8897765


Q ss_pred             c
Q 015421          385 F  385 (407)
Q Consensus       385 ~  385 (407)
                      +
T Consensus       439 ~  439 (448)
T TIGR01081       439 I  439 (448)
T ss_pred             H
Confidence            4

Alternate name: murein tripeptide ligase

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=1.5e-51  Score=446.82  Aligned_cols=331  Identities=19%  Similarity=0.228  Sum_probs=260.9

Q ss_pred             CCcEEEEecCCChHhHHHHHHHHHHhc---CCceeeccc----CCccchhhhhhcccCCCCCCCCcEEEEEeccc---cc
Q 015421           42 SIKILAVTGTNGKSTVVTFVGQMLNHL---GIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QM  111 (407)
Q Consensus        42 ~~~~I~VTGTnGKTTt~~~l~~iL~~~---g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~---~l  111 (407)
                      +.++|+||||||||||++||+++|+..   +..+.+.||    +|.|++....        ..+.+++|+|+|++   ++
T Consensus       602 ~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~~--------~~~~~~~VlE~s~~~~g~~  673 (958)
T PRK11929        602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLRL--------RAQHRAAVFELGMNHPGEI  673 (958)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhcC--------CCCCcEEEEEeCCCCCccH
Confidence            568999999999999999999999998   444566777    5666554322        45678999999964   55


Q ss_pred             ccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhcc-ccceEEeecCCCccc
Q 015421          112 EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKI  190 (407)
Q Consensus       112 ~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~  190 (407)
                      +.+..+++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.||+....+.... ..++++|+......+
T Consensus       674 ~~~~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~~~~~  753 (958)
T PRK11929        674 AYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADV  753 (958)
T ss_pred             HHHhCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCCCcce
Confidence            5554557999999999999999999999999999999999888889999999999887765433 234677775321111


Q ss_pred             ccc----------cccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCcee
Q 015421          191 DTE----------AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ  260 (407)
Q Consensus       191 ~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e  260 (407)
                      ...          .....+.+...+..   ..+.++++|.||++|+++|+  +++..+|++++.|.++|++|++++||||
T Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e  828 (958)
T PRK11929        754 YAEKIAKDISVGEAGGTRCQVVTPAGS---AEVYLPLIGEHNLRNALAAI--ACALAAGASLKQIRAGLERFQPVAGRMQ  828 (958)
T ss_pred             EeeecccceeecCCCceEEEEEECCce---EEEEeCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCCce
Confidence            000          00111221111101   12468999999999999999  8999999999999999999999999999


Q ss_pred             EEeeecCCEEEEEcCCCCCHHHHHHHHhccCC---CcEEEEECCCCCCCCCCCCcchHhhhhhcc--CccEEEEeCCChH
Q 015421          261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKG---HKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITFGYSGV  335 (407)
Q Consensus       261 ~~~~~~~~~~iidD~~a~np~s~~~al~~~~~---~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~~~v~~~g~~~~  335 (407)
                      .+.. .++..+|||+|||||+|++++|+.+..   +|+++|+|+|.+.|+++.+ .|.++++.+.  ..+.++++|+.+.
T Consensus       829 ~~~~-~~~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e~g~~~~~-~h~~~g~~~~~~~~~~vi~~Ge~~~  906 (958)
T PRK11929        829 RRRL-SCGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLELGDNGPA-MHREVGKYARQLGIDALITLGEAAR  906 (958)
T ss_pred             EEEc-CCCcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchhcCcHHHH-HHHHHHHHHHHcCCCEEEEECcCHH
Confidence            9853 578899999999999999999998852   5889999999998887743 4667777653  3689999999998


Q ss_pred             HHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhhc
Q 015421          336 LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSK  403 (407)
Q Consensus       336 ~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l~  403 (407)
                      .+.+.+....    ...++++++|++.+.+.+++||+||++ |           ||++.||++++.|+
T Consensus       907 ~i~~~~~~~~----~~~~~~~~~a~~~~~~~~~~gD~VLlk-G-----------Sr~~~le~~~~~~~  958 (958)
T PRK11929        907 DAAAAFGAGA----RGVCASVDEIIAALRGALPEGDSVLIK-G-----------SRFMRLERVVDALS  958 (958)
T ss_pred             HHHHhhhccc----ceeeCCHHHHHHHHHHhcCCCCEEEEE-e-----------CccCcHHHHHHhhC
Confidence            8888765421    123689999999999999999999998 4           79999999999875

>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional

Probab=100.00  E-value=6.8e-51  Score=433.96  Aligned_cols=331  Identities=16%  Similarity=0.195  Sum_probs=258.7

Q ss_pred             CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecc----cCCccchhhhhhcccCCCCCCCCcEEEEEeccc---cccc
Q 015421           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG----NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QMEI  113 (407)
Q Consensus        41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g----~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~---~l~~  113 (407)
                      .+.++|+||||||||||++||+++|+..|..+.+.+    ++|.|.+....        ..+++++|+|+|+.   .++.
T Consensus       105 ~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~~~~~~n~~ig~p~~~~~~--------~~~~~~~V~E~s~s~~~~~~~  176 (822)
T PRK11930        105 FDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQL--------NEEHELGIFEAGISQPGEMEA  176 (822)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHhccCcEecCCcccCcchhHHHHHhcC--------CCCCcEEEEEeCCCCCChHHH
Confidence            467899999999999999999999999887665443    46777664322        45778999999943   3344


Q ss_pred             CCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhcc--ccceEEeecCC---Cc
Q 015421          114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFP---GV  188 (407)
Q Consensus       114 ~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~--~~~~~~~~~~~---~~  188 (407)
                      +...++|+++|||||++||+++|+|+|+|+++|.++++.   .+.+|+|.||+....+....  ..++++|+...   ++
T Consensus       177 l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~  253 (822)
T PRK11930        177 LQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPL  253 (822)
T ss_pred             HhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcE
Confidence            444589999999999999999999999999999999984   47899999999887655322  23566777431   11


Q ss_pred             ccc---cccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeee
Q 015421          189 KID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD  265 (407)
Q Consensus       189 ~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~  265 (407)
                      ...   .......+.+...+..   ..+.+|++|.||++|+++|+  +++..+|++++.|.++|++|++++||||++. .
T Consensus       254 ~~~~i~~~~~~~~~~~~~~~~~---~~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~-~  327 (822)
T PRK11930        254 YIPFVEKKEDHTVISYTYKGED---FHFEIPFIDDASIENLIHCI--AVLLYLGYSADQIQERMARLEPVAMRLEVKE-G  327 (822)
T ss_pred             EEEEEEEcCCceEEEEEeCCce---EEEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCeeEEEE-c
Confidence            111   0111112332221111   23578999999999999999  8899999999999999999999999999985 2


Q ss_pred             cCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCCCcchHhhhhhccC--ccEEEEeCCChHHHHH
Q 015421          266 IQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVITFGYSGVLIWK  339 (407)
Q Consensus       266 ~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~--~~~v~~~g~~~~~~~~  339 (407)
                      .+++.+|||+|||||+|++++|+.+.    ++++++|+|+|.+.|..+ ...|+++++.+..  .+.++++|+....+.+
T Consensus       328 ~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~-~~~~~~l~~~l~~~~i~~vi~~G~~~~~~~~  406 (822)
T PRK11930        328 INNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSP-EELYRKVAQLISKRGIDRLIGIGEEISSEAS  406 (822)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcCchH-HHHHHHHHHHHHHcCCCEEEEECHHHHHHHH
Confidence            57899999999999999999999884    257899999999888655 3468888887752  7899999988776665


Q ss_pred             HHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhhccc
Q 015421          340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSKHD  405 (407)
Q Consensus       340 ~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l~~~  405 (407)
                      .+..    ..+.++++.+++++.+.+.+++||+||++ |           ||++.||++++.|+++
T Consensus       407 ~~~~----~~~~~~~~~e~a~~~l~~~~~~gDvVLlK-G-----------Sr~~~le~i~~~~~~~  456 (822)
T PRK11930        407 KFEG----TEKEFFKTTEAFLKSFAFLKFRNELILVK-G-----------ARKFEFEQITELLEQK  456 (822)
T ss_pred             hcCc----cccEEECCHHHHHHHHHHhcCCCCEEEEE-c-----------CCCCCHHHHHHHHHHh
Confidence            4321    13456789999999999999999999998 4           7999999999998654

>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional

Probab=100.00  E-value=3.7e-49  Score=395.47  Aligned_cols=322  Identities=24%  Similarity=0.309  Sum_probs=237.6

Q ss_pred             CCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhc-ccCCC-----------CCCCCcEEEEEeccc
Q 015421           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALPS-----------SKPKFQVAVVEVSSY  109 (407)
Q Consensus        42 ~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~~-----------~~~~~~~~V~E~g~~  109 (407)
                      +.++|+||||||||||++||+++|+..|.++++.||++.++....... .++++           .+.+++++|+|+|++
T Consensus        94 ~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~i~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~  173 (460)
T PRK00139         94 KLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGIGGELIPSGLTTPDALDLQRLLAELVDAGVTYAAMEVSSH  173 (460)
T ss_pred             ccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccccCCeecccCCCCcCHHHHHHHHHHHHHCCCCEEEEEcchh
Confidence            678999999999999999999999999999998888777654421100 01110           145789999999976


Q ss_pred             ccc--cCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccccceEEeecC-C
Q 015421          110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-P  186 (407)
Q Consensus       110 ~l~--~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~-~  186 (407)
                      +++  .+.. ++|+++|||||++||+++|||+|+|+++|.+|++...  +.+|+|.||+.+..+...    +.+|+.. .
T Consensus       174 ~~~~~~l~~-~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~~--~~~v~n~dd~~~~~~~~~----~~~~~~~~~  246 (460)
T PRK00139        174 ALDQGRVDG-LKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSELG--LAAVINADDEVGRRLLAL----PDAYAVSMA  246 (460)
T ss_pred             hHhhchhcC-CcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcCC--CeEEEEcCcHhHHHHHhh----cEEEEecCC
Confidence            654  3333 7999999999999999999999999999999998642  489999999987766542    3344432 1


Q ss_pred             CcccccccccceeEeccCCeeeeee-ecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeee
Q 015421          187 GVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD  265 (407)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~  265 (407)
                      ...+    ....+.....+..+.+. .+.++++|.||++|+++|+  +++..+|++++.|.++|++|++++||||++.. 
T Consensus       247 ~~~~----~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~~~~i~~~L~~~~~~~gR~e~~~~-  319 (460)
T PRK00139        247 GADL----RATDVEYTDSGQTFTLVTEVESPLIGRFNVSNLLAAL--AALLALGVPLEDALAALAKLQGVPGRMERVDA-  319 (460)
T ss_pred             CCcE----EEEEEEEecCceEEEEEEEEEecccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEEc-
Confidence            1111    00112222223233332 4578999999999999999  89999999999999999999999999999852 


Q ss_pred             cCCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHhhhhhc-cC-ccEEEEeCCCh-----H
Q 015421          266 IQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPL-NH-HRCVITFGYSG-----V  335 (407)
Q Consensus       266 ~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l-~~-~~~v~~~g~~~-----~  335 (407)
                      .++..+|+| |||||+|++++++.+.   ++|+++|+|+..+++.     .|++++..+ .. .|.+++++..+     .
T Consensus       320 ~~~~~iI~D-yahNP~s~~aal~~l~~~~~~r~i~VlG~g~~k~~-----~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~  393 (460)
T PRK00139        320 GQGPLVIVD-YAHTPDALEKVLEALRPHAKGRLICVFGCGGDRDK-----GKRPLMGAIAERLADVVIVTSDNPRSEDPA  393 (460)
T ss_pred             CCCCEEEEE-CCCCHHHHHHHHHHHHhhcCCcEEEEECCCCCCch-----hhhHHHHHHHHHcCCEEEEECCCCCCCCHH
Confidence            467889999 7999999999999885   3689999997554432     344444333 22 57777775433     3


Q ss_pred             HHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEc-CCCCCcccccC
Q 015421          336 LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN  387 (407)
Q Consensus       336 ~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~-~G~~s~~~~~~  387 (407)
                      .+.+.+.. +.   ...++|+++|++.+.+.+++||+||+. +|+..|+.+++
T Consensus       394 ~i~~~~~~-~~---~~~~~d~~~Ai~~~~~~~~~gDvVLv~G~G~e~~~~~~~  442 (460)
T PRK00139        394 AIIADILA-GI---YDVIEDRAEAIRYAIAQAKPGDVVLIAGKGHEDYQIIGG  442 (460)
T ss_pred             HHHHHHHh-CC---CcccCCHHHHHHHHHHhcCCCCEEEEEEccCcccEEECC
Confidence            46665543 21   235689999999999999999998886 67777776554

>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase

Probab=100.00  E-value=6.2e-49  Score=394.89  Aligned_cols=333  Identities=23%  Similarity=0.303  Sum_probs=237.6

Q ss_pred             CCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhh---h-cccCC-----------CCCCCCcEEEEEe
Q 015421           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF---H-CIALP-----------SSKPKFQVAVVEV  106 (407)
Q Consensus        42 ~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~---~-~~~~~-----------~~~~~~~~~V~E~  106 (407)
                      +.++|+||||||||||++||+++|+..|.++++.++.|.++.....   . ..+++           ..+.+++++|+|+
T Consensus        84 ~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~  163 (464)
T TIGR01085        84 KLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLAEMVEAGAQYAVMEV  163 (464)
T ss_pred             ccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence            5789999999999999999999999999987665555544221000   0 00000           0134678999999


Q ss_pred             cccccc--cCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccccceEEeec
Q 015421          107 SSYQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA  184 (407)
Q Consensus       107 g~~~l~--~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~  184 (407)
                      |++.++  .+.. ++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||....+.......+.+...
T Consensus       164 g~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~  242 (464)
T TIGR01085       164 SSHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDITVSAI  242 (464)
T ss_pred             cHHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhcCCCeEEEEe
Confidence            976543  4444 7999999999999999999999999999999999887788999999999887775443322222211


Q ss_pred             CC-------Cccccc---ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcC-CCHHHHHHHhhcCC
Q 015421          185 FP-------GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILR  253 (407)
Q Consensus       185 ~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lg-i~~~~i~~~L~~~~  253 (407)
                      ..       ++....   ......|.+...+..   ..+.+|++|.||++|+++|+  +++..+| ++++.|.++|++|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~l~G~hn~~NalaAi--a~a~~lg~i~~e~i~~~L~~~~  317 (464)
T TIGR01085       243 TQPADGRAQDIKITDSGYSFEGQQFTFETPAGE---GHLHTPLIGRFNVYNLLAAL--ATLLHLGGIDLEDIVAALEKFR  317 (464)
T ss_pred             cCCCccccccEEEEEEEEecCceEEEEEeCCce---EEEEecCccHhHHHHHHHHH--HHHHHcCCCCHHHHHHHHHhCC
Confidence            11       111000   000112222211111   12468999999999999999  8889998 99999999999999


Q ss_pred             CCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHhhhhhcc--CccEEE
Q 015421          254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVI  328 (407)
Q Consensus       254 ~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~~~v~  328 (407)
                      +++||||++.. .++..+|+| |||||+||+++++.+.   ++|+++|+|...++.     ..|++++..+.  ..|.++
T Consensus       318 ~~~gR~e~~~~-~~g~~vi~D-y~~NP~s~~aal~~l~~~~~~r~i~VlGlg~~~~-----~~~~~~~~~~~~~~~d~vi  390 (464)
T TIGR01085       318 GVPGRMELVDG-GQKFLVIVD-YAHTPDALEKALRTLRKHKDGRLIVVFGCGGDRD-----RGKRPLMGAIAEQLADLVI  390 (464)
T ss_pred             CCCCCcEEEEc-CCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCcEEEEECCCCCCC-----cchhHHHHHHHHhcCCEEE
Confidence            99999999852 457899999 7999999999999884   468899999433332     13666666553  257888


Q ss_pred             EeCCCh-----HHHHHHHHhC-CCCccccccccHHHHHHHHHHhcCCCCEEEEc-CCCCCcccccC
Q 015421          329 TFGYSG-----VLIWKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN  387 (407)
Q Consensus       329 ~~g~~~-----~~~~~~l~~~-~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~-~G~~s~~~~~~  387 (407)
                      ++|+.+     ..+.+.+... .....+..++|+++|++++.+.+++||+||++ +|+.+|+.+++
T Consensus       391 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~d~VLv~G~g~~~~~~~~~  456 (464)
T TIGR01085       391 LTSDNPRGEDPEQIIADILAGISEKEKVVIIADRRQAIRYAISNAKAGDVVLIAGKGHEDYQIIGG  456 (464)
T ss_pred             EeCCCcCCCCHHHHHHHHHhcccCCCcEEEECCHHHHHHHHHHhcCCCCEEEEEEcCCcccEEECC
Confidence            877653     3343333221 10112455789999999999999999999996 88888887654

A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=100.00  E-value=1e-47  Score=408.54  Aligned_cols=355  Identities=14%  Similarity=0.162  Sum_probs=258.0

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCc--eeecccCCcc
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNP   81 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~--~~~~g~~g~~   81 (407)
                      +||+||+++++||++++|++.|+|++++++++++.. +..++|+||||||||||++|++++|+.+|.+  +.++|++|.|
T Consensus        66 ~vV~SpgI~~~~p~~~~a~~~gi~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~gG~~g~~  144 (809)
T PRK14573         66 VVVYSSSISKDNVEYLSAKSRGNRLVHRAELLAELM-QEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQEG  144 (809)
T ss_pred             EEEECCCcCCCCHHHHHHHHCCCcEEeHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCccccc
Confidence            699999999999999999999999999999999887 4458999999999999999999999999975  4678888887


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccC-CCHHHHHHHHHHhhcccCCCceEE
Q 015421           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL  160 (407)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~-~t~e~i~~~K~~i~~~~~~~~~~v  160 (407)
                      +...          ..+.+++|+|+|+.+ .... .++|+++|||||++||+|+| +|+|+|+++|..+++.+++.+.+|
T Consensus       145 ~~~~----------~~~~d~~V~E~ss~~-~~~~-~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V  212 (809)
T PRK14573        145 LNGY----------SGSSEYFVAEADESD-GSLK-HYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCF  212 (809)
T ss_pred             cccc----------cCCCCEEEEECCCCc-chhh-eeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            6542          224688999999875 3222 48999999999999999998 799999999999988777788999


Q ss_pred             EeCCChhhHHHHhccccceEEeecCC--Ccc---cccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHH
Q 015421          161 LPFGNQHLNEAIKGHRFNLAWIGAFP--GVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG  235 (407)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~  235 (407)
                      +|.||+.+....     +..+|+...  ++.   +..+.....|.+...+.  .+....++++|.||++|+++|+  +++
T Consensus       213 ~N~Dd~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~--~~~~~~l~l~G~hn~~Na~aAi--a~~  283 (809)
T PRK14573        213 YNGDCPRLKGCL-----QGHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGV--VYQDIELNLVGMHNVANAAAAM--GIA  283 (809)
T ss_pred             EeCCCHHHHhhc-----ccEEEccCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEeccccHhhHHHHHHHH--HHH
Confidence            999999765432     123444321  111   00011111122211111  1123468899999999999999  888


Q ss_pred             HHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCCC
Q 015421          236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQES  311 (407)
Q Consensus       236 ~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~  311 (407)
                      ..+|++.+.|.++|++|++++||||++. ..+++.+|+| |||||++++++++.+.    .+|+++||++..+...   +
T Consensus       284 ~~lgi~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~i~D-~ahnP~~~~a~l~~l~~~~~~~rli~vf~~~~~~~~---~  358 (809)
T PRK14573        284 LTLGIDEGAIRNALKGFSGVQRRLERKN-SSETFLFLED-YAHHPSEISCTLRAVRDAVGLRRIIAICQPHRFSRL---R  358 (809)
T ss_pred             HHcCCCHHHHHHHHHhCCCCCCCCEEEe-ccCCcEEEEE-CCCCHHHHHHHHHHHHhhcCCCEEEEEEcCCcchhH---H
Confidence            9999999999999999999999999986 3467889999 6999999999998773    3678899976544322   2


Q ss_pred             cchHhhhhhccCccEEEEeC-----------CChHHHHHHHHhCCC-CccccccccHHHHHHHHHHhcCCCCEEEEcCCC
Q 015421          312 NGFEKLIEPLNHHRCVITFG-----------YSGVLIWKTLVNNGL-SIPCFAVANMKDAVNHARRMATNGDAIVLSPGC  379 (407)
Q Consensus       312 ~~~~~~~~~l~~~~~v~~~g-----------~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~  379 (407)
                      ..+.++...+...|.++++.           .+++.+.+.++..+. ...+...++..++++   +.++++|++|+. |+
T Consensus       359 ~~~~~~~~~l~~~d~vilt~~~~~~e~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~al~---~~~~~~d~~~il-~~  434 (809)
T PRK14573        359 ECLDSFPSAFQDADEVILTDVYSAGEEPEDSISYQKLAEAISQSSIVKCTYVPFHEIQRYLE---QSIRVHDVCVSL-GA  434 (809)
T ss_pred             HHHHHHHHHHHHCCEEEECCccCCCCCCCCCCCHHHHHHHHhhcCCCceeecCHHHHHHHHH---HhcCCCCEEEEE-CC
Confidence            23455555555567777742           123456666643210 001122334444443   334566876553 88


Q ss_pred             CCcccccChh
Q 015421          380 ASFDEFRNFE  389 (407)
Q Consensus       380 ~s~~~~~~~~  389 (407)
                      |||+.+....
T Consensus       435 GSly~i~~~~  444 (809)
T PRK14573        435 GNIYTLGEAL  444 (809)
T ss_pred             CCHHHHHHHH
Confidence            9999876654

>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional

Probab=100.00  E-value=8.4e-48  Score=387.73  Aligned_cols=317  Identities=23%  Similarity=0.288  Sum_probs=227.3

Q ss_pred             CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCC-------------ccchhhhhhcccCCCCCCCCcEEEEEec
Q 015421           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG-------------NPLSEAAFHCIALPSSKPKFQVAVVEVS  107 (407)
Q Consensus        41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g-------------~~~~~~~~~~~~~~~~~~~~~~~V~E~g  107 (407)
                      .++++|+||||||||||++||+++|+..|.++.+.|+.|             .|.....+.... ...+.+.+++|+|+|
T Consensus       108 ~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~~-~~~e~g~~~~v~Evs  186 (481)
T PRK14022        108 HKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKSALTTPESLDLFKMMA-EAVDNGMTHLIMEVS  186 (481)
T ss_pred             hccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeeccCCeeeeCCCCCchHHHHHHHHH-HHHHCCCCEEEEEec
Confidence            467899999999999999999999999998776555432             452211110000 001346788999999


Q ss_pred             ccccccCCc-cccceEEEEecCChhhhcc--CCCHHHHHHHHHHhhcccCCCceEEEeCC-ChhhHHHHhccccceEEee
Q 015421          108 SYQMEIPNK-YFCPTVSVVLNLTPDHLER--HKTMKNYALTKCHLFSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWIG  183 (407)
Q Consensus       108 ~~~l~~~~~-~~~p~i~viTni~~dHl~~--~~t~e~i~~~K~~i~~~~~~~~~~v~n~d-d~~~~~~~~~~~~~~~~~~  183 (407)
                      ++++...+. .++|+++|||||++||+++  |+|+|+|+++|++|++   +++.+|+|.| |+...........++++|+
T Consensus       187 S~~~~~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~~~~~~~~~~~~~~g  263 (481)
T PRK14022        187 SQAYLVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTPQEHDFYG  263 (481)
T ss_pred             hhHHHhccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHHHHHHhcCCCEEEEe
Confidence            875432221 3799999999999999999  8999999999999997   4679999998 5543322222223567777


Q ss_pred             cCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEe
Q 015421          184 AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH  263 (407)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~  263 (407)
                      ......+...   ..+.+...+..  ...+.++++|.||++|+++|+  +++..+|++++.|.++|++ .+++||||++.
T Consensus       264 ~~~~~~~~~~---~~~~~~~~~~~--~~~~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~i~~~L~~-~~~~gR~e~i~  335 (481)
T PRK14022        264 IDSENQIMAS---NAFSFEATGKL--AGTYDIQLIGKFNQENAMAAG--LACLRLGASLEDIQKGIAQ-TPVPGRMEVLT  335 (481)
T ss_pred             cCCccceEEE---EEEEEEEcccC--CceEEEEEechhhHHHHHHHH--HHHHHcCCCHHHHHHHhcc-CCCCCCeEEEE
Confidence            5321111100   01222211100  012357799999999999999  8889999999999999999 99999999995


Q ss_pred             eecCCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHhhhhhccC-cc-EEEEeC-----CC
Q 015421          264 RDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HR-CVITFG-----YS  333 (407)
Q Consensus       264 ~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~-~v~~~g-----~~  333 (407)
                      . .++..+|+| |||||+|++++++.+.   ++|+++|+|+|.|+|...    +.++++.+.. .+ .+++++     ++
T Consensus       336 ~-~~g~~vi~D-yahNP~s~~aal~~l~~~~~~r~i~V~G~~~e~g~~~----~~~~~~~~~~~~~~~vi~~~~~~r~e~  409 (481)
T PRK14022        336 Q-SNGAKVFID-YAHNGDSLNKLIDVVEEHQKGKLILLLGAAGNKGESR----RPDFGRVANRHPYLQVILTADDPNNED  409 (481)
T ss_pred             C-CCCCEEEEE-CCCCHHHHHHHHHHHhhhCCCCEEEEECCCCCCCcch----hHHHHHHHHhcCCceEEEccCCCCCCC
Confidence            2 467789999 6999999999998883   468999999999988654    4556665543 23 366665     34


Q ss_pred             hHHHHHHHHhCCCCccccccccHHHHHHHHHHhcC-CCCEEEEc
Q 015421          334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT-NGDAIVLS  376 (407)
Q Consensus       334 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~-~gd~vL~~  376 (407)
                      +..+.+.+.... ...+..++|+++|++.+.+.++ +||+||+.
T Consensus       410 ~~~i~~~i~~~~-~~~~~~~~d~~~Ai~~a~~~a~~~gD~VLi~  452 (481)
T PRK14022        410 PKMITQEIASHI-THPVEIIDDRAEAIKHAMSITEGPGDAVIIA  452 (481)
T ss_pred             HHHHHHHHHhcC-CCCeEEECCHHHHHHHHHHhcCCCCCEEEEE
Confidence            477777775421 1134567899999999999999 99999984

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=4.1e-47  Score=412.15  Aligned_cols=341  Identities=22%  Similarity=0.307  Sum_probs=245.4

Q ss_pred             CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhcc-cCC-----------CCCCCCcEEEEEecc
Q 015421           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI-ALP-----------SSKPKFQVAVVEVSS  108 (407)
Q Consensus        41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~-~~~-----------~~~~~~~~~V~E~g~  108 (407)
                      ++.++|+||||||||||++||+++|+..|+++++.|++|.++....+... +++           ..+.+++++|+|+|+
T Consensus       110 ~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~i~~~~i~~~~t~~~~~~~~~~l~~~~~~~~~~~VlE~ss  189 (958)
T PRK11929        110 EQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDGRLIPGSLTTPDAIILHRILARMRAAGADAVAMEASS  189 (958)
T ss_pred             hccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCccccCCCeeeecCCCCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            46789999999999999999999999999999888888776543222111 111           114578999999998


Q ss_pred             cccc--cCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccc--cceEEeec
Q 015421          109 YQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR--FNLAWIGA  184 (407)
Q Consensus       109 ~~l~--~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~--~~~~~~~~  184 (407)
                      ++++  .+.. ++|+++|||||++||+++|||+|+|+++|++|++.+++++.+|+|.|||....+.....  ..+.+++.
T Consensus       190 ~~l~~~rl~~-~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~  268 (958)
T PRK11929        190 HGLEQGRLDG-LRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLKVGYSPQ  268 (958)
T ss_pred             chHhhCcccc-cccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHHcCCCceEEEEee
Confidence            7664  3333 68999999999999999999999999999999998888899999999998877764332  13444442


Q ss_pred             CC--Ccccc---cccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCce
Q 015421          185 FP--GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM  259 (407)
Q Consensus       185 ~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~  259 (407)
                      ..  ++...   .......|.+...+...   .+.++++|.||++|+++|+  +++..+|++++.|.++|++|++++|||
T Consensus       269 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~I~~~L~~~~~~~gR~  343 (958)
T PRK11929        269 NAGADVQARDLRATAHGQVFTLATPDGSY---QLVTRLLGRFNVSNLLLVA--AALKKLGLPLAQIARALAAVSPVPGRM  343 (958)
T ss_pred             CCCccEEEEEEEEcCCceEEEEEeCCceE---EEEecCccHhhHHHHHHHH--HHHHHcCCCHHHHHHHHhcCCCCCCCc
Confidence            21  22111   01111123322211111   2468999999999999999  889999999999999999999999999


Q ss_pred             eEEe--eecCCEEEEEcCCCCCHHHHHHHHhccC------CCcEEEEECCCCCCCCCCCCcchHhhhhhcc--CccEEEE
Q 015421          260 QIVH--RDIQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVIT  329 (407)
Q Consensus       260 e~~~--~~~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~~~v~~  329 (407)
                      |++.  ...++..+|+| |||||+|++++++.+.      ++|+++|+|+..+++.     .++++...+.  ..|.+++
T Consensus       344 e~i~~~~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~g~~r~~-----~~~~~~~~~~~~~~d~vi~  417 (958)
T PRK11929        344 ERVGPTAGAQGPLVVVD-YAHTPDALAKALTALRPVAQARNGRLVCVFGCGGDRDK-----GKRPEMGRIAAELADRVVV  417 (958)
T ss_pred             EEeccccCCCCCEEEEE-CCCCHHHHHHHHHHHHHhcccCCCcEEEEECCCCCCCc-----chhHHHHHHHHHhCCEEEE
Confidence            9983  11356778888 6999999999999884      3678999997765543     2344444332  2577776


Q ss_pred             eC-----CChHHHHHHHHhCCCC--ccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHH
Q 015421          330 FG-----YSGVLIWKTLVNNGLS--IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ  396 (407)
Q Consensus       330 ~g-----~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~  396 (407)
                      +.     +++..+.+.+.. +..  ..+..++|+++|++.+.+.+++||+||++ | ...+.|+.+..|+..|.
T Consensus       418 t~~~pr~e~p~~i~~~i~~-~~~~~~~~~~~~d~~~Ai~~a~~~a~~gD~VLv~-G-sG~e~~~~~~~~~~~f~  488 (958)
T PRK11929        418 TSDNPRSEAPEAIIDQILA-GIPAGARVFVISDRAEAIRQAIWMAAPGDVILIA-G-KGHETYQEIGGRKLFFD  488 (958)
T ss_pred             cCCCCCCCCHHHHHHHHHh-hccCCCceEEECCHHHHHHHHHHhcCCCCEEEEe-e-cCcchheEECCEecCCC
Confidence            53     334667766643 211  13566789999999999999999999886 3 23444445555555543

>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase

Probab=100.00  E-value=2e-45  Score=362.34  Aligned_cols=319  Identities=20%  Similarity=0.234  Sum_probs=227.1

Q ss_pred             CCCcEEEEecCCChHhHHHHHHHHHHhcCCceee--cccC----------Cccchhhhhhc--------c-c---CC---
Q 015421           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV--GGNL----------GNPLSEAAFHC--------I-A---LP---   93 (407)
Q Consensus        41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~--~g~~----------g~~~~~~~~~~--------~-~---~~---   93 (407)
                      +++++|+||||||||||++||+++|+.+|++++.  ++++          |.+++...+..        . .   ++   
T Consensus        16 ~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~f   95 (397)
T TIGR01499        16 DLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPILEKLSQQPTYF   95 (397)
T ss_pred             hhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHHHhccCCCCHH
Confidence            4578999999999999999999999999999953  3332          55555432210        0 0   11   


Q ss_pred             ----------CCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHHHHHhhcccCCCceEEE
Q 015421           94 ----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLL  161 (407)
Q Consensus        94 ----------~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~K~~i~~~~~~~~~~v~  161 (407)
                                +.+.++|++|+|+| +|++|.++. ++|+++|||||+.||+++|| |+|+|+++|++|++   +++.+|+
T Consensus        96 e~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~-i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~I~k---~~~~~v~  171 (397)
T TIGR01499        96 ELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNV-IEPLVSVITSIGLDHTEILGDTLEEIAWEKAGIIK---EGVPIVT  171 (397)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeecCCCCcccccc-cCCCeEEEccccHHHHHHhCccHHHHHHHHhCccC---CCCCEEE
Confidence                      12568899999999 578888776 78999999999999999998 99999999999998   4568999


Q ss_pred             eCCChhhHHHHh----ccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHH
Q 015421          162 PFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD  237 (407)
Q Consensus       162 n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~  237 (407)
                      |.||+....+..    ....++++++.+  +.+... ....+.+.....  ....+.++++|.||++|+++|+  +++..
T Consensus       172 ~~d~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~--~~~~~~~~l~G~~~~~N~~~Ai--aa~~~  244 (397)
T TIGR01499       172 GPQEPEALNVLKKKAQEKGAPLFVVGRD--FNYSET-DENYLSFSGANL--FLEPLALSLLGDHQAENAALAL--AALEV  244 (397)
T ss_pred             cCCChHHHHHHHHHHHHcCCCEEEeccc--eeeccc-ccceEEeecccc--cccccCCCCCCHHHHHHHHHHH--HHHHH
Confidence            999987765532    223445555532  111100 011233321110  1112467899999999999999  77777


Q ss_pred             cCC-----CHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCC
Q 015421          238 IGV-----DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNG  308 (407)
Q Consensus       238 lgi-----~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~  308 (407)
                      +|.     +.+.|.++|+++. +|||||++.  .++..+|.| ++|||+|+.++++.+.    ++++++|+|+..+++  
T Consensus       245 lg~~~~~i~~~~i~~~L~~~~-~pGR~e~i~--~~~~~viiD-~AHNp~a~~~~l~~l~~~~~~~~i~~V~G~~~dkd--  318 (397)
T TIGR01499       245 LGKQRPKLSEEAIRKGLANTI-WPGRLEILS--EDNPNILLD-GAHNPHSAEALAEWFKKRFNGRPIILLFGALADKD--  318 (397)
T ss_pred             HHhccCCCCHHHHHHHHHhCC-CCceEEEEe--cCCCEEEEE-CCCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCC--
Confidence            775     5899999999997 999999995  334555556 4999999999998874    357889999887653  


Q ss_pred             CCCcchHhhhhhccC-c--cEEEEe-----CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCC
Q 015421          309 QESNGFEKLIEPLNH-H--RCVITF-----GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA  380 (407)
Q Consensus       309 ~~~~~~~~~~~~l~~-~--~~v~~~-----g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~  380 (407)
                           +.++.+.+.+ .  |.+++.     ++++..+.+.+....    +...+++++|++.+. .++++|+||++   |
T Consensus       319 -----~~~~~~~l~~~~~~d~~~~~~~~~r~~~~~~i~~~~~~~~----~~~~~~~~~ai~~a~-~~~~~d~vlv~---G  385 (397)
T TIGR01499       319 -----AAAMLAPLKPVVDKEVFVTPFDYPRADDAADLAALAETFG----KETVEDWREALALAL-NASAEDDILVT---G  385 (397)
T ss_pred             -----HHHHHHHHhhccCcEEEEECCCCCCCCCHHHHHHHHHHcC----ceecCCHHHHHHHHH-hCCCCCEEEEE---c
Confidence                 3344444322 2  244443     345667777665431    345789999999988 77889999987   6


Q ss_pred             CcccccChh
Q 015421          381 SFDEFRNFE  389 (407)
Q Consensus       381 s~~~~~~~~  389 (407)
                      ||+.+..+.
T Consensus       386 Slyl~~~~~  394 (397)
T TIGR01499       386 SLYLVGEVR  394 (397)
T ss_pred             cHHHHHHHH
Confidence            888776654

A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.

>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.8e-44  Score=357.21  Aligned_cols=336  Identities=23%  Similarity=0.317  Sum_probs=253.8

Q ss_pred             CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhh--cccCCC-----------CCCCCcEEEEEec
Q 015421           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH--CIALPS-----------SKPKFQVAVVEVS  107 (407)
Q Consensus        41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~--~~~~~~-----------~~~~~~~~V~E~g  107 (407)
                      +++++|+||||||||||++++.++++..|.++...|+.|.-++.....  ..++|.           .+...+++++|++
T Consensus        89 ~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvs  168 (475)
T COG0769          89 GKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVS  168 (475)
T ss_pred             cCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcEEEEEee
Confidence            368999999999999999999999999999887666655444211111  123332           2567899999999


Q ss_pred             ccccccCCcc-ccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHH---HhccccceEEee
Q 015421          108 SYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA---IKGHRFNLAWIG  183 (407)
Q Consensus       108 ~~~l~~~~~~-~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~---~~~~~~~~~~~~  183 (407)
                      ++++.+.+.. ...+++++||++.||+|+|+|+|+|+.+|..+|..+++.+.+|+|.||+....+   ......+.++++
T Consensus       169 sh~l~~~Rv~~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~~~~~~~  248 (475)
T COG0769         169 SHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYG  248 (475)
T ss_pred             hhHHHhCCccCceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhcCCCEEEeC
Confidence            9988776654 478999999999999999999999999999999867778899999999998444   333333577777


Q ss_pred             cCCCcc------cccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 015421          184 AFPGVK------IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH  257 (407)
Q Consensus       184 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~g  257 (407)
                      ......      ++....+..+.+...+.   ...+++|++|.||++|+++|+  +++..+|+|+++|.++|++|+|++|
T Consensus       249 ~~~~~~~~~~~~i~~~~~g~~~~~~~~~~---~~~~~~~L~G~fNv~NaLaA~--a~~~~lG~~~e~i~~~l~~~~~v~G  323 (475)
T COG0769         249 CDFKRPDLDYRGIEESSSGSDFVFEPSGG---IGEYELPLPGLFNVYNALAAV--AAALALGVDLEDILAGLETLKPVPG  323 (475)
T ss_pred             CCCchhhhhhccceeeeccceeEEEccCC---ceeEeccccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCC
Confidence            653211      11111111111111111   123479999999999999999  8899999999999999999999999


Q ss_pred             ceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHhhhhhccCccEEEEe----
Q 015421          258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITF----  330 (407)
Q Consensus       258 R~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~----  330 (407)
                      |||.+..  ++..++.| |+|||++++++|+.+.   .+++++|+|+.+|+ +.+++..+..++..++  |.++++    
T Consensus       324 RmE~v~~--~~~~v~VD-yAHnPd~le~~L~~~~~~~~g~li~VfG~gGDr-D~~kr~~mg~ia~~~a--d~vivt~dnp  397 (475)
T COG0769         324 RMELVNI--GGKLVIVD-YAHNPDGLEKALRAVRLHAAGRLIVVFGCGGDR-DKSKRPDMGAIAEQLA--DIVIVTSDNP  397 (475)
T ss_pred             cceEecC--CCCeEEEE-eccChHHHHHHHHHHHhhcCCcEEEEECccCCC-CcccccchHHHHHhcC--CcEEEcCCCC
Confidence            9999963  36666666 6999999999998874   47899999999988 7777778888877765  555555    


Q ss_pred             -CCChHHHHHHHHhCCCC-ccccccccHHHHHHHHHHhcCCCCEEEEc-CCCCCcccccC
Q 015421          331 -GYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN  387 (407)
Q Consensus       331 -g~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~a~~~~~~gd~vL~~-~G~~s~~~~~~  387 (407)
                       ++++..+.+.+...-.. ..+....|+++|+++++..++++|+|++. +|+..++.+.+
T Consensus       398 R~edp~~i~~~i~~g~~~~~~~~~~~dr~~AI~~ai~~a~~~D~vliagkGhe~yq~~~~  457 (475)
T COG0769         398 RSEDPAVILADILAGIEAPEKYEIIEDREEAIRKALDLAKEGDVVLIAGKGHETYQIMLE  457 (475)
T ss_pred             CCcCHHHHHHHHHhccCCccceecchhHHHHHHHHHHhhccCCEEEEeeccchhhhhhhc
Confidence             34455555555443111 12566789999999999999999988875 88999888776

>TIGR02068 cya_phycin_syn cyanophycin synthetase

Probab=100.00  E-value=2.5e-43  Score=374.27  Aligned_cols=328  Identities=19%  Similarity=0.209  Sum_probs=236.2

Q ss_pred             CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhc--ccC------CCCCCCCcEEEEEeccccc-
Q 015421           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC--IAL------PSSKPKFQVAVVEVSSYQM-  111 (407)
Q Consensus        41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~--~~~------~~~~~~~~~~V~E~g~~~l-  111 (407)
                      .++|+|+||||||||||++||+++|+..|++++..++.|..+....+..  .+.      -..++++|++|+|+|++++ 
T Consensus       477 ~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~l~~~~vd~aVlE~~~ggil  556 (864)
T TIGR02068       477 GRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRILMDPTVDAAVLETARGGIL  556 (864)
T ss_pred             CceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHHhhCCCCCEEEEEccCCchh
Confidence            4578999999999999999999999999998865443332221111000  000      0125678999999998765 


Q ss_pred             ccCCccccceEEEEecCChhhhccC--CCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccccceEEeecCCCcc
Q 015421          112 EIPNKYFCPTVSVVLNLTPDHLERH--KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK  189 (407)
Q Consensus       112 ~~~~~~~~p~i~viTni~~dHl~~~--~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~  189 (407)
                      +....+.+|+++|||||+.||++++  +|+|+|+++|+.+++.+++++.+|+|.|||.+..++.....++++|+.+.+..
T Consensus       557 ~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~~~~~~vi~f~~~~~~~  636 (864)
T TIGR02068       557 REGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAMAEKCKGKIAYFSMDPNNP  636 (864)
T ss_pred             hccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHhCCCCEEEEecCCCCh
Confidence            4444446899999999999999864  69999999999999988889999999999998888766666788887543211


Q ss_pred             -----cccccc-----cceeEeccCCeee---eeeecccCCCC--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 015421          190 -----IDTEAK-----TASFEVPAVGVVS---QLQLHNMKVMG--RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT  254 (407)
Q Consensus       190 -----~~~~~~-----~~~~~~~~~~~~~---~~~~~~l~~~G--~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~  254 (407)
                           ......     ...+.+...+...   ....+.++++|  .||++|+++|+  ++++.+|++++.|.++|++|.+
T Consensus       637 ~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAi--aaa~~lgi~~e~I~~gL~~F~~  714 (864)
T TIGR02068       637 TVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAV--AAAWALGVPIELIRAGIRTFDA  714 (864)
T ss_pred             HHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccCCcccchHHHHHHHH--HHHHHcCCCHHHHHHHHHhccc
Confidence                 000000     0001111111110   11122344445  89999999999  8899999999999999999987


Q ss_pred             ----CCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc---CCCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccE
Q 015421          255 ----PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRC  326 (407)
Q Consensus       255 ----~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~  326 (407)
                          ++||||++.  .++..+|+| |||||+|++++++.+   +.+|+++|+|++.++.+.    .+.++++.+.+ .|.
T Consensus       715 ~~~~~pGR~e~~~--~~g~~vI~D-yAHNP~a~~all~~l~~~~~~r~i~Vig~~gdr~~~----~~~~lg~~l~~~~d~  787 (864)
T TIGR02068       715 DAAQAPGRFNLFN--LGGAHVLVD-YGHNPAAIEAVGAAIRNWPARRRIGVIGGPGDRRDE----DLVEQGELLGGAFDQ  787 (864)
T ss_pred             cccCCCCceEEEE--eCCcEEEEE-cCCCHHHHHHHHHHHHhcCCCCEEEEECCCCCCChh----HHHHHHHHHHHhCCE
Confidence                999999984  467788888 599999999877765   346789999999766432    46677777654 677


Q ss_pred             EEEe----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcC
Q 015421          327 VITF----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP  377 (407)
Q Consensus       327 v~~~----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~  377 (407)
                      ++++          |+.+..+.+.+.+.+....+..+++.++|++.|.+.+++||+||+.+
T Consensus       788 vil~~~~~~rg~~~ge~~~~i~~~~~~~~~~~~v~~~~d~~eAi~~a~~~a~~gDlVLi~~  848 (864)
T TIGR02068       788 IILKEDDDVRGRPRGEAAALLRQGLRQSARKAAIEDILDETEAIAAALDDLRAGDLVVIFP  848 (864)
T ss_pred             EEEEeCCCcCCCCCchHHHHHHHHHHhcCCCCcEEEEcCHHHHHHHHHHhCCCCCEEEEEe
Confidence            8775          23344555555443322245668899999999999999999999974

Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.

>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]

Probab=100.00  E-value=3.2e-42  Score=333.09  Aligned_cols=330  Identities=19%  Similarity=0.236  Sum_probs=237.2

Q ss_pred             eeHHHHHHhhC---CCCCcEEEEecCCChHhHHHHHHHHHHhcCCce--eecccC----------Cccchhhhhhc----
Q 015421           29 MSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNL----------GNPLSEAAFHC----   89 (407)
Q Consensus        29 l~~~~~~~~~~---~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~--~~~g~~----------g~~~~~~~~~~----   89 (407)
                      |.|+..+.+.+   ++..++|+|+|||||+|||+|+.++|.++|+++  +|++++          |.|+++..+..    
T Consensus        27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~  106 (427)
T COG0285          27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER  106 (427)
T ss_pred             hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence            78888777665   356789999999999999999999999999998  467764          56666664321    


Q ss_pred             ---cc-----C-C-------------CCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHH
Q 015421           90 ---IA-----L-P-------------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT  145 (407)
Q Consensus        90 ---~~-----~-~-------------~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~  145 (407)
                         ..     . +             +.+.++|++|+|+| +|++|.+++ +.|+++|||||+.||.+++| |+|+|+.+
T Consensus       107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATNV-i~p~vsvIT~I~lDH~~~LG~tie~IA~E  185 (427)
T COG0285         107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNV-IEPDVSVITSIGLDHTAFLGDTLESIARE  185 (427)
T ss_pred             HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccccchhc-cCCceEEEcccChhHHHHhCCcHHHHHHH
Confidence               00     0 0             23556999999999 789999998 88999999999999999997 99999999


Q ss_pred             HHHhhcccCCCceEEEeC-CChhhHHHH----hccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCCh
Q 015421          146 KCHLFSHMVNTKLGLLPF-GNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR  220 (407)
Q Consensus       146 K~~i~~~~~~~~~~v~n~-dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~  220 (407)
                      |++|++   ++.++|+.. +.|.+....    ....++...++.+.  .....  ...+....++   ......+|++|.
T Consensus       186 KAGI~k---~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~---~~~~~~lp~l~~  255 (427)
T COG0285         186 KAGIIK---AGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPDF--QVLEE--GNGFSFQGGG---GLLDLPLPLLGG  255 (427)
T ss_pred             hhhhcc---CCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccch--hhccc--cceEEEecCC---eeeeeccccccc
Confidence            999999   455677766 456454443    22334444433221  11111  1223332211   222357898888


Q ss_pred             h-HHHHHHHHHHHHHHHHcC--CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CC
Q 015421          221 H-NYHNAAVAALSVLGLDIG--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GH  293 (407)
Q Consensus       221 ~-~~~Nal~A~~~a~~~~lg--i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~  293 (407)
                      | |..||++|+  +++..++  ++.+.|.+||++.. ||||||++.  .++..+||  .||||+|+.++.+.++    ..
T Consensus       256 ~~Q~~NAa~Ai--~al~~l~~~i~~~~i~~gl~~~~-wpGR~e~l~--~~p~i~lD--gAHNp~aa~~La~~l~~~~~~~  328 (427)
T COG0285         256 HHQIENAALAI--AALEALGKEISEEAIRKGLANVD-WPGRLERLS--ENPLILLD--GAHNPHAARALAETLKTLFNDR  328 (427)
T ss_pred             hhHHHHHHHHH--HHHHHhcccCCHHHHHHHHHhCc-CCceEEEec--CCCeEEEE--CCCCHHHHHHHHHHHHHHhccC
Confidence            8 999999999  7778776  58999999999999 999999994  56666666  7999999998877763    23


Q ss_pred             c-EEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEEe------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHH
Q 015421          294 K-CVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITF------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR  365 (407)
Q Consensus       294 ~-~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~  365 (407)
                      + +++|+|...+|+.       ..+...+.+ .+.++++      +.++..+.+.+...+   ... .++.++|++.+.+
T Consensus       329 ~~~~~v~g~l~dKd~-------~~~l~~L~~~~~~~~~~~~~~~ra~~~~~l~~~~~~~~---~~~-~~~~~~a~~~~~~  397 (427)
T COG0285         329 PRLTLVFGMLKDKDI-------AGMLAALLPIVDEIYTTPLPWPRALDAEELLAFAGERG---GVE-LDDVAEALELALE  397 (427)
T ss_pred             CceEEEEEeecCCCH-------HHHHHHhhccCcEEEEccCCCcccCCHHHHHHHHHhhc---CCc-cccHHHHHHHHHH
Confidence            3 7899999987753       345555443 3566665      233455555554332   111 6789999999988


Q ss_pred             hcCCCCEEEEcCCCCCcccccChhh
Q 015421          366 MATNGDAIVLSPGCASFDEFRNFEH  390 (407)
Q Consensus       366 ~~~~gd~vL~~~G~~s~~~~~~~~~  390 (407)
                      ...++|.|||+   |||+.+.++.+
T Consensus       398 ~~~~~~~ilV~---GSly~~~ev~~  419 (427)
T COG0285         398 KADEDDLVLVT---GSLYLAGEVLE  419 (427)
T ss_pred             hcCCCCeEEEE---ecHHHHHHHHH
Confidence            77667899887   68887665544

>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional

Probab=100.00  E-value=6.7e-42  Score=338.57  Aligned_cols=327  Identities=18%  Similarity=0.145  Sum_probs=223.9

Q ss_pred             ceeeHHHHHHhhC---CCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeec--ccC----------Cccchhhhhhcc-
Q 015421           27 RVMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG--GNL----------GNPLSEAAFHCI-   90 (407)
Q Consensus        27 ~~l~~~~~~~~~~---~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~--g~~----------g~~~~~~~~~~~-   90 (407)
                      +-|.++..+.+.+   +++.++|+||||||||||++|++++|+.+|++++..  +++          |.+++...+... 
T Consensus        30 ~~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~  109 (416)
T PRK10846         30 LGLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASF  109 (416)
T ss_pred             CChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHH
Confidence            3466666666544   345789999999999999999999999999998543  321          444432221100 


Q ss_pred             -----------cC-----------CCCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHHH
Q 015421           91 -----------AL-----------PSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK  146 (407)
Q Consensus        91 -----------~~-----------~~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~K  146 (407)
                                 .+           .+.+.++|++|+|+| +|++|.++. ++|+++|||||++||+++|| |+|+|+++|
T Consensus       110 ~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggrld~tn~-i~p~vaviTnI~~DHld~lG~t~e~ia~~K  188 (416)
T PRK10846        110 AEIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGREK  188 (416)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCCchhhhc-cCCCEEEECCccHHHHHHhcCCHHHHHHHH
Confidence                       00           013567899999999 789999887 78999999999999999998 899999999


Q ss_pred             HHhhcccCCCceEEEeCCC-hh-hHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHH
Q 015421          147 CHLFSHMVNTKLGLLPFGN-QH-LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH  224 (407)
Q Consensus       147 ~~i~~~~~~~~~~v~n~dd-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~  224 (407)
                      ++|++   +++.+|+|.+| +. ....+....+++..++..  +.+..+.  ..+.+.....  .  ...++++ .||++
T Consensus       189 a~Iik---~~~~~V~~~~d~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~--~~~~~l~-~~~~~  256 (416)
T PRK10846        189 AGIFR---AEKPAVVGEPDMPSTIADVAQEKGALLQRRGVD--WNYSVTD--HDWAFSDGDG--T--LENLPLP-NVPLP  256 (416)
T ss_pred             Hhhhc---CCCeEEECCccHhHHHHHHHHHhCCcEEEecce--eeeeccC--ceEEEecCcc--c--cccCCcc-chHHH
Confidence            99998   35678998766 43 333444444444433321  1110000  1111111100  0  1135555 47999


Q ss_pred             HHHHHHHHHHH--HHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc---C-CCcEEEE
Q 015421          225 NAAVAALSVLG--LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---K-GHKCVIL  298 (407)
Q Consensus       225 Nal~A~~~a~~--~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~-~~~~i~V  298 (407)
                      |+++|+  +++  ..++++.+.|.++|+++. +|||||++.  ..+ .+|+|+ ||||++++++++.+   . ++|+++|
T Consensus       257 N~~~Ai--a~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~~-~iI~D~-AHNp~a~~~l~~~L~~~~~~~~ii~V  329 (416)
T PRK10846        257 NAATAL--AALRASGLEVSEQAIRDGIASAI-LPGRFQIVS--ESP-RVILDV-AHNPHAAEYLTGRLKALPKNGRVLAV  329 (416)
T ss_pred             HHHHHH--HHHHHcCCCCCHHHHHHHHHhCC-CCceEEEEc--CCC-cEEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            999998  555  346799999999999998 999999984  333 466675 99999999985544   3 4588999


Q ss_pred             ECCCCCCCCCCCCcchHhhhhhcc-CccEEEEe------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCC
Q 015421          299 LGGQAKVLNGQESNGFEKLIEPLN-HHRCVITF------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD  371 (407)
Q Consensus       299 ~g~~~~~~~~~~~~~~~~~~~~l~-~~~~v~~~------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd  371 (407)
                      +|.+.+++       +......+. ..+.++++      |.++..+.+.+..      ...++++++|++.+.+.+++||
T Consensus       330 fg~~gdkd-------~~~~l~~L~~~~d~viv~~~~~~r~~~~~~l~~~~~~------~~~~~~~~~Ai~~a~~~a~~gD  396 (416)
T PRK10846        330 IGMLHDKD-------IAGTLACLKSVVDDWYCAPLEGPRGATAEQLAEHLGN------GKSFDSVAQAWDAAMADAKPED  396 (416)
T ss_pred             EEeeCCCC-------HHHHHHHHhhhCCEEEEECCCCCCCCCHHHHHHHhhh------CcccCCHHHHHHHHHHhcCCCC
Confidence            99887653       223333333 24444332      4555666666542      2356889999999999999999


Q ss_pred             EEEEcCCCCCcccccChh
Q 015421          372 AIVLSPGCASFDEFRNFE  389 (407)
Q Consensus       372 ~vL~~~G~~s~~~~~~~~  389 (407)
                      +||++   |||+.+.++.
T Consensus       397 ~VLi~---GS~~~~~~~~  411 (416)
T PRK10846        397 TVLVC---GSFHTVAHVM  411 (416)
T ss_pred             EEEEE---CcHHHHHHHH
Confidence            99984   7888876663

>PLN02913 dihydrofolate synthetase

Probab=100.00  E-value=2.3e-41  Score=340.22  Aligned_cols=343  Identities=15%  Similarity=0.176  Sum_probs=232.9

Q ss_pred             eeHHHHHHhhC---CCCCcEEEEecCCChHhHHHHHHHHHHhcCCcee--ecccC------------Cccchhhhhhcc-
Q 015421           29 MSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNL------------GNPLSEAAFHCI-   90 (407)
Q Consensus        29 l~~~~~~~~~~---~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~--~~g~~------------g~~~~~~~~~~~-   90 (407)
                      |.|+..+.+.+   ++++++|+||||||||||++||+++|+++|++++  |++++            |.|++...+... 
T Consensus        58 L~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~  137 (510)
T PLN02913         58 LGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLF  137 (510)
T ss_pred             HHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHH
Confidence            56677666554   2357899999999999999999999999999984  55552            577766643100 


Q ss_pred             -----------------cCC-----------CCCCCCcEEEEEec-ccccccCCcc--ccceEEEEecCChhhhccCC-C
Q 015421           91 -----------------ALP-----------SSKPKFQVAVVEVS-SYQMEIPNKY--FCPTVSVVLNLTPDHLERHK-T  138 (407)
Q Consensus        91 -----------------~~~-----------~~~~~~~~~V~E~g-~~~l~~~~~~--~~p~i~viTni~~dHl~~~~-t  138 (407)
                                       .+.           +.+.++|++|+|+| +|.+|.++..  .+|+++|||||+.||++++| |
T Consensus       138 ~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~T  217 (510)
T PLN02913        138 HGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGS  217 (510)
T ss_pred             HHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhccc
Confidence                             000           23578999999999 6789999873  23599999999999999998 9


Q ss_pred             HHHHHHHHHHhhcccCCCceEEEeC-CChhhHH----HHhccccceEEeecC-CCccccc-c-cccceeEecc-----CC
Q 015421          139 MKNYALTKCHLFSHMVNTKLGLLPF-GNQHLNE----AIKGHRFNLAWIGAF-PGVKIDT-E-AKTASFEVPA-----VG  205 (407)
Q Consensus       139 ~e~i~~~K~~i~~~~~~~~~~v~n~-dd~~~~~----~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~-----~~  205 (407)
                      +|+|+++|++|++   ++..+|++. ..+....    .+...++++++++.. ..+.... . .....+.+..     .+
T Consensus       218 le~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (510)
T PLN02913        218 LESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEK  294 (510)
T ss_pred             HHHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEeccccccceeecccccCCceeEEecccccccc
Confidence            9999999999999   567888875 3343333    333345566555321 1111100 0 0111122110     00


Q ss_pred             ---eeeeeeecccCCCChhHHHHHHHHHHHHHHHHc-----CCCHHHHHHHhhcCCCCCCceeEEeee------cCCEEE
Q 015421          206 ---VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-----GVDVEALNSTIEILRTPPHRMQIVHRD------IQGVTW  271 (407)
Q Consensus       206 ---~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~~~~------~~~~~i  271 (407)
                         .......+.++++|.||++|+++|+  +++..+     +++.+.|.++|+++. ||||||++...      ..+..|
T Consensus       295 ~~~~~~~~~~~~l~L~G~hq~~Naa~Al--aa~~~L~~~~~~i~~~~I~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~v  371 (510)
T PLN02913        295 DDPLFIELSDVNLRMLGSHQLQNAVTAA--CAALCLRDQGWRISDASIRAGLENTN-LLGRSQFLTSKEAEVLGLPGATV  371 (510)
T ss_pred             ccccccccccccCCCCCHHHHHHHHHHH--HHHHHHHhcCCCCCHHHHHHHHHhCC-CCCceEEeeccccccccCCCCEE
Confidence               0001112468899999999999999  666666     799999999999999 89999998411      024577


Q ss_pred             EEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCCCcchHhhhhhc-c--CccEEEEeC----------CCh
Q 015421          272 VDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPL-N--HHRCVITFG----------YSG  334 (407)
Q Consensus       272 idD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l-~--~~~~v~~~g----------~~~  334 (407)
                      |+|+ +|||+|++++++.+.    ++|+++|+|++.|+       .+.++++.+ .  ..|.++++.          .++
T Consensus       372 IlDg-AHNp~s~~al~~~L~~~~~~~ki~~V~gml~DK-------d~~~~l~~l~~~~~~d~v~~~~~~~~~~~~r~~~~  443 (510)
T PLN02913        372 LLDG-AHTKESAKALVDTIKTAFPEARLALVVAMASDK-------DHLAFASEFLSGLKPEAVFLTEADIAGGKSRSTSA  443 (510)
T ss_pred             EEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEEEccCCC-------CHHHHHHHHhcccCCCEEEEEcCCCCCCCCCCCCH
Confidence            8885 799999999988763    35788888888654       356676643 2  257676652          224


Q ss_pred             HHHHHHHHhCCCCcccc--------ccccHHHHHHHHHHhc--CCCCEEEEcCCCCCcccccCh
Q 015421          335 VLIWKTLVNNGLSIPCF--------AVANMKDAVNHARRMA--TNGDAIVLSPGCASFDEFRNF  388 (407)
Q Consensus       335 ~~~~~~l~~~~~~~~~~--------~~~~~~~a~~~a~~~~--~~gd~vL~~~G~~s~~~~~~~  388 (407)
                      ..+.+.+++......+.        .+++..+|++.+.+..  .++|.|+++   |||+.+.+.
T Consensus       444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~v~---GSlylv~~v  504 (510)
T PLN02913        444 SALKEAWIKAAPELGIETLLAENNSLLKSLVDASAILRKARTLDPSSVVCVT---GSLHIVSAV  504 (510)
T ss_pred             HHHHHHHHHhccccCceeeccccccccCCHHHHHHHHHHhcccCCCCEEEEe---CcHHHHHHH
Confidence            55666554321111122        3788999999988766  467888886   688877665

>PLN02881 tetrahydrofolylpolyglutamate synthase

Probab=100.00  E-value=4.6e-36  Score=297.11  Aligned_cols=329  Identities=17%  Similarity=0.148  Sum_probs=221.0

Q ss_pred             eeeHHHHHHhhC---C--CCCcEEEEecCCChHhHHHHHHHHHHhcCCcee--eccc----------CCccchhhhhh--
Q 015421           28 VMSELDFAAQVI---P--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGN----------LGNPLSEAAFH--   88 (407)
Q Consensus        28 ~l~~~~~~~~~~---~--~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~--~~g~----------~g~~~~~~~~~--   88 (407)
                      -|.++..+.+.+   +  +++++|+|||||||||||+|+.++|+++|++++  ++++          -|.|++...+.  
T Consensus        41 ~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~  120 (530)
T PLN02881         41 QFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRY  120 (530)
T ss_pred             ChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHH
Confidence            356666555443   2  466899999999999999999999999999985  4444          25677663221  


Q ss_pred             ---------ccc-C----C-------------CCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CH
Q 015421           89 ---------CIA-L----P-------------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM  139 (407)
Q Consensus        89 ---------~~~-~----~-------------~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~  139 (407)
                               ... .    +             +...++|++|+|+| +|++|.++.+.+|+++|||||+.||+++|| |+
T Consensus       121 f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tl  200 (530)
T PLN02881        121 FWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTL  200 (530)
T ss_pred             HHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCH
Confidence                     110 0    1             12567899999999 789999987558999999999999999998 99


Q ss_pred             HHHHHHHHHhhcccCCCceEEEeCCChhhHHHH----hccccceEEeecCCCcccccccccceeEeccCCeeeeeeeccc
Q 015421          140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM  215 (407)
Q Consensus       140 e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  215 (407)
                      |+|+.+|++|++   ++..+|+..+++....+.    ...+.+...++...           .+.+         ....+
T Consensus       201 e~IA~~KagI~k---~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~~~-----------~~~~---------~~~~l  257 (530)
T PLN02881        201 GKIAGEKAGIFK---PGVPAFTVPQPDEAMRVLEERASELGVPLQVVEPLD-----------SYGL---------SGLKL  257 (530)
T ss_pred             HHHHHHHHHHHh---cCCCEEEeCCChHHHHHHHHHHHHhCCcEEEecccc-----------ccee---------cccCC
Confidence            999999999998   456677766666554443    33334443332110           0111         11368


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHc---------------CCCHHHHHHHhhcCCCCCCceeEEee------ecCCEEEEEc
Q 015421          216 KVMGRHNYHNAAVAALSVLGLDI---------------GVDVEALNSTIEILRTPPHRMQIVHR------DIQGVTWVDD  274 (407)
Q Consensus       216 ~~~G~~~~~Nal~A~~~a~~~~l---------------gi~~~~i~~~L~~~~~~~gR~e~~~~------~~~~~~iidD  274 (407)
                      ++.|.||..|+++|+  +++..+               ...++.+.+||+++. ||||||++..      ..++..++.|
T Consensus       258 ~L~G~~Q~~NaalAl--a~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~-wpGR~e~v~~~~~~~~~~~~~~~~LD  334 (530)
T PLN02881        258 GLAGEHQYLNAGLAV--ALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTAS-LQGRAQVVPDSYINSEDSGDLVFYLD  334 (530)
T ss_pred             CCCChhHHHhHHHHH--HHHHHHHhhccccccccccccCCCHHHHHHHHHhCC-CCceEEEeccccccccCCCCCeEEEE
Confidence            899999999999999  444432               234568999999999 9999999841      0134456666


Q ss_pred             CCCCCHHHHHHHHhccC------------------------------CCcEEEEECCCCCCCCCCCCcchHhhhhhcc--
Q 015421          275 SKATNLEATCTGLMDLK------------------------------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--  322 (407)
Q Consensus       275 ~~a~np~s~~~al~~~~------------------------------~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--  322 (407)
                       +||||+|+.++.+.+.                              ..++++|||++.+++...   .+..+...+.  
T Consensus       335 -GAHNp~s~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dkD~~~---lL~~L~~~~~~~  410 (530)
T PLN02881        335 -GAHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVRDPQL---LLPPLANTCASN  410 (530)
T ss_pred             -CCCCHHHHHHHHHHHHHHhcccccCCcccccccccccccccccccCCCCEEEEEcCCCCCCHHH---HHHHHHHHHHhc
Confidence             6999999998877651                              126899999998775432   3334444332  


Q ss_pred             --CccEEEEeCCC---------------h------HHHHHHHHhCC--C----------------------Ccccccccc
Q 015421          323 --HHRCVITFGYS---------------G------VLIWKTLVNNG--L----------------------SIPCFAVAN  355 (407)
Q Consensus       323 --~~~~v~~~g~~---------------~------~~~~~~l~~~~--~----------------------~~~~~~~~~  355 (407)
                        .+|.++++-..               .      ..+++..++..  .                      .....++++
T Consensus       411 ~~~f~~aiF~~n~~~~~~~~~~~~~~~~~~~l~~q~~l~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s  490 (530)
T PLN02881        411 GVPFKKALFVPNISVYNKVGSGLPVDDPQVDLSWQFTLQRVWESLIRGKAGAPADAVCEESASSGLNDGKSDENSAVFPS  490 (530)
T ss_pred             CCCCCeEEEcCCccccCCCcccCCCcchhhhHHHHHHHHHHHHHhccccccccccccccccccccccCCCCCCceeEecC
Confidence              24554443111               0      12333332221  0                      124567899


Q ss_pred             HHHHHHHHHHhcCCCC----EEEEcCCCCCcccccChh
Q 015421          356 MKDAVNHARRMATNGD----AIVLSPGCASFDEFRNFE  389 (407)
Q Consensus       356 ~~~a~~~a~~~~~~gd----~vL~~~G~~s~~~~~~~~  389 (407)
                      .++|++++.....+..    -|||+   ||++.+.++.
T Consensus       491 i~~Ai~~~r~~~~~~~~~~~~vlVT---GSlhLvG~~l  525 (530)
T PLN02881        491 LPLAIKWLRDCARENPSLRFQVLVT---GSLHLVGDVL  525 (530)
T ss_pred             HHHHHHHHHHHhhhCCCcceEEEEe---cchhhhhHHH
Confidence            9999999988765332    37776   6788766543

>PRK14016 cyanophycin synthetase; Provisional

Probab=99.97  E-value=7.6e-32  Score=281.60  Aligned_cols=250  Identities=18%  Similarity=0.194  Sum_probs=171.8

Q ss_pred             ccccCcCc-HHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhh
Q 015421            8 LLEFQLKA-TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA   86 (407)
Q Consensus         8 ~~~~~~~~-p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~   86 (407)
                      +|.++..+ |.+..+++-+.+++..+.....  +.+.|+|+||||||||||++|++++|+..|++++..++.|..+....
T Consensus       446 sPgi~~~~~p~~g~~r~v~~~Iid~L~~~~~--~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~  523 (727)
T PRK14016        446 APGLRMHLAPSEGKPRNVGEAIVDMLFPEGD--DGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRL  523 (727)
T ss_pred             CcchhhccCCCCCcchhHHHHHHHHhcccCC--CCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEE
Confidence            34444322 4444445444455554322221  13679999999999999999999999999999877666665442211


Q ss_pred             hhcc--cC------CCCCCCCcEEEEEecccccccCC-ccccceEEEEecCChhhhccCC--CHHHHHHHHHHhhcccCC
Q 015421           87 FHCI--AL------PSSKPKFQVAVVEVSSYQMEIPN-KYFCPTVSVVLNLTPDHLERHK--TMKNYALTKCHLFSHMVN  155 (407)
Q Consensus        87 ~~~~--~~------~~~~~~~~~~V~E~g~~~l~~~~-~~~~p~i~viTni~~dHl~~~~--t~e~i~~~K~~i~~~~~~  155 (407)
                      +..-  +.      -..+++++++|+|+|++++.... .+.+|+++|||||++||+++++  |+|+|+++|+.+++.+++
T Consensus       524 i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~  603 (727)
T PRK14016        524 IDKGDCTGPKSARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKP  603 (727)
T ss_pred             eccccccCHHHHHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCC
Confidence            1000  00      00245678999999988774322 3468999999999999999874  999999999999998888


Q ss_pred             CceEEEeCCChhhHHHHhccccceEEeecCCCccc-----ccccc-----cceeEeccCCeeee---eeecccCCCC--h
Q 015421          156 TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI-----DTEAK-----TASFEVPAVGVVSQ---LQLHNMKVMG--R  220 (407)
Q Consensus       156 ~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~---~~~~~l~~~G--~  220 (407)
                      +|.+|+|.||+.+..++.....++++|+.+.+..+     .....     ...+.+..++....   +..+.+.++|  .
T Consensus       604 ~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~i~l~~~G~~~  683 (727)
T PRK14016        604 DGYAVLNADDPMVAAMAERCKGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEIRIISLADIPLTLGGKAG  683 (727)
T ss_pred             CCeEEEcCCCHHHHHHHHhCCCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcceeeccccccceecCCcch
Confidence            99999999999998887666667888875432111     00000     00111111111111   1122343366  6


Q ss_pred             hHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CCCceeE
Q 015421          221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT----PPHRMQI  261 (407)
Q Consensus       221 ~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~----~~gR~e~  261 (407)
                      ||++|+++|+  ++++.+|++++.|.++|++|.+    .||||+.
T Consensus       684 hnv~NalAAi--Aaa~~lGi~~~~I~~~L~sF~~~~~~~pGR~n~  726 (727)
T PRK14016        684 FNIENALAAI--AAAWALGIDIELIRAGLRTFVSDAAQAPGRFNL  726 (727)
T ss_pred             hhHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCccCCCccccc
Confidence            9999999999  8999999999999999999986    9999985

>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment

Probab=99.97  E-value=4.7e-31  Score=233.75  Aligned_cols=176  Identities=25%  Similarity=0.349  Sum_probs=130.3

Q ss_pred             EecCCChHhHHHHHHHHHHhcCCceeeccc----CCccchhhhhhcccCCCCCCCCcEEEEEecccccc--cCCccccce
Q 015421           48 VTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME--IPNKYFCPT  121 (407)
Q Consensus        48 VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~--~~~~~~~p~  121 (407)
                      ||||||||||++||+++|+..|..+++.|+    +|.+.......       +.+.+++|+|+|++++.  .+...++|+
T Consensus         1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~V~E~~~~~~~~~~l~~~~~p~   73 (188)
T PF08245_consen    1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNTNNQIGLPLLLLNAR-------EGGADIAVLEVSEGGLGDERLSFLLKPD   73 (188)
T ss_dssp             EESSSSHHHHHHHHHHHHHHTTEEEEEESSCHHHHHHHHHHHHHH-------HTTSSEEEEEESSSCCCTSTTSGGSBES
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHhhhc-------ccccceeeeeccCCccccceeeeeeehh
Confidence            899999999999999999999998887776    44444333321       35789999999987443  233337999


Q ss_pred             EEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccccceEEeecCCCccccc-----cccc
Q 015421          122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKT  196 (407)
Q Consensus       122 i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  196 (407)
                      ++|||||++||+++|+|+++|+++|.++++.+++++.+|+|.|||.+.......+.++++|+.+....+..     ....
T Consensus        74 i~viTni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~  153 (188)
T PF08245_consen   74 IAVITNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASNISYSEEG  153 (188)
T ss_dssp             EEEE----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEEEEEETTE
T ss_pred             eeeeceecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeeeEEEecCC
Confidence            99999999999999999999999999999999889999999999988887777777899999875442211     1111


Q ss_pred             ceeEec-cCCeeeeeeecccCCCChhHHHHHHHHHHHHHH
Q 015421          197 ASFEVP-AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG  235 (407)
Q Consensus       197 ~~~~~~-~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~  235 (407)
                      ..+.+. ..+...   .+.++++|.||++|+++|+  ++|
T Consensus       154 ~~~~i~~~~~~~~---~~~~~l~G~hn~~NalaA~--a~a  188 (188)
T PF08245_consen  154 GRFRIISYNGEEF---EIELPLPGKHNVENALAAI--AAA  188 (188)
T ss_dssp             EEEEEEEETTEEE---EEEESSSSHHHHHHHHHHH--HHH
T ss_pred             cEEEEEEecCceE---EEEecCCCHHHHHHHHHHH--HhC
Confidence            122111 122222   2579999999999999998  554

The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....

>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]

Probab=99.97  E-value=1.7e-29  Score=240.81  Aligned_cols=242  Identities=23%  Similarity=0.286  Sum_probs=174.0

Q ss_pred             CCCcEEEEecCCChHhHHHHHHHHHHhcCCce--eecccC----------Cccchhhhhhcc----------------c-
Q 015421           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNL----------GNPLSEAAFHCI----------------A-   91 (407)
Q Consensus        41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~--~~~g~~----------g~~~~~~~~~~~----------------~-   91 (407)
                      .++.+||||||+||+|||.++.+||++.|+++  ++++++          |.|++...+...                . 
T Consensus        70 ~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~  149 (496)
T KOG2525|consen   70 NSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSM  149 (496)
T ss_pred             hheeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCC
Confidence            46889999999999999999999999999998  466663          778877644210                0 


Q ss_pred             ---C---------CCCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHHHHHhhcccCCCc
Q 015421           92 ---L---------PSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK  157 (407)
Q Consensus        92 ---~---------~~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~K~~i~~~~~~~~  157 (407)
                         +         -+...++|+||+|+| +|++|.++++-+|-++.||+||.||++++| |+++|+.+|++||+.   +.
T Consensus       150 p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~---gv  226 (496)
T KOG2525|consen  150 PTYFEFLTLLAFHVFVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKE---GV  226 (496)
T ss_pred             CchhhhhHhhhheeeeecCCcEEEEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhcccccc---CC
Confidence               0         123678999999999 789999998678999999999999999997 999999999999983   44


Q ss_pred             eEEEeCCChhhHHHHhccccc--eEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHH
Q 015421          158 LGLLPFGNQHLNEAIKGHRFN--LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG  235 (407)
Q Consensus       158 ~~v~n~dd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~  235 (407)
                      .++.....+.+....+.....  +.-+-..+                 . ....+....+.+.|.||..|+.+|+..+-+
T Consensus       227 paft~~q~~e~~nvL~~ra~e~~~~L~~v~p-----------------~-~~~~ls~~~lgl~g~hq~~na~lA~~L~~~  288 (496)
T KOG2525|consen  227 PAFTVPQPPEALNVLKERASELGVPLFVVPP-----------------L-EAYELSGVNLGLIGTHQWSNASLAVQLASE  288 (496)
T ss_pred             ceEEcCCcHHHHHHHHHHHHhcCCCceecCC-----------------c-hhhhhcCCcccccccchhhhhHHHHHHHHH
Confidence            555555666666655432111  10000000                 0 000011124778899999999999853333


Q ss_pred             HH-------c--------C--CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC-------
Q 015421          236 LD-------I--------G--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-------  291 (407)
Q Consensus       236 ~~-------l--------g--i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-------  291 (407)
                      +.       .        +  +|+ ....||+++. ||||.|++. ..++.+++.| +|||++||+++.+.+.       
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~i~~-~~l~GL~~~~-wPGR~qil~-~~~~~~~llD-GAHt~eSaea~~~w~~~~~~~~~  364 (496)
T KOG2525|consen  289 WLIQNGRVAEGVLDALQTSGLIPP-AFLSGLASTD-WPGRLQILE-YGRGVTWLLD-GAHTKESAEACAKWFRKAVRGLK  364 (496)
T ss_pred             HHHhcCcccccCCCccccccCCCH-HHhcchhhcc-CCCceEEEe-cCCCcEEEec-CCCCHHHHHHHHHHHHHHhccCC
Confidence            32       0        1  444 4456999999 999999996 3467778888 6999999999876652       


Q ss_pred             CCc-EEEEECCCCCCCC
Q 015421          292 GHK-CVILLGGQAKVLN  307 (407)
Q Consensus       292 ~~~-~i~V~g~~~~~~~  307 (407)
                      +.+ +|++|.++.+++.
T Consensus       365 ~~~~~illfn~t~~~d~  381 (496)
T KOG2525|consen  365 KLTSLILLFNCTSDRDP  381 (496)
T ss_pred             CccceEEEEEecCCcch
Confidence            222 5899998887654

>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family

Probab=99.27  E-value=5.6e-12  Score=97.64  Aligned_cols=77  Identities=23%  Similarity=0.272  Sum_probs=59.2

Q ss_pred             CCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEE
Q 015421          255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVIT  329 (407)
Q Consensus       255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~  329 (407)
                      ||||||++. ..+++.+|+| |||||+|++++++.+    +.+++++|+|.+.++|..+. ..+..+++.+.. .+.+++
T Consensus         1 vpgR~e~v~-~~~~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~-~~~~~~~~~~~~~~d~vi~   77 (91)
T PF02875_consen    1 VPGRMEVVR-EPNGPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDK-DFHEEIGELAAQLADVVIL   77 (91)
T ss_dssp             ETTSSEEEE-EETTEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHH-HCHHHHHHHHTTCSSEEEE
T ss_pred             CCCCcEEEe-eCCCcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccH-HHHHHHHHHHHhcCCEEEE
Confidence            699999996 3578999999 799999999999887    46899999999988665442 356678777775 677888


Q ss_pred             eCCCh
Q 015421          330 FGYSG  334 (407)
Q Consensus       330 ~g~~~  334 (407)
                      ++..+
T Consensus        78 ~~~~~   82 (91)
T PF02875_consen   78 TGDNP   82 (91)
T ss_dssp             ETSBT
T ss_pred             cCCCC
Confidence            87654

; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.92  E-value=0.054  Score=50.35  Aligned_cols=117  Identities=18%  Similarity=0.272  Sum_probs=70.9

Q ss_pred             CCcEEEEecC--CChHhHHHHHHHHHHhcCCceee----------ccc-CCccchhhhhh---cccCC------------
Q 015421           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV----------GGN-LGNPLSEAAFH---CIALP------------   93 (407)
Q Consensus        42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~----------~g~-~g~~~~~~~~~---~~~~~------------   93 (407)
                      +..+|||||+  .||||...-|..-|.+.|.++..          +|+ +|.-+-...+.   ..+.+            
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS  129 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS  129 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence            5679999998  57999999999999999998632          222 22221111111   00000            


Q ss_pred             ---------CCCCCCcEEEEEecc-cccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421           94 ---------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (407)
Q Consensus        94 ---------~~~~~~~~~V~E~g~-~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~  163 (407)
                               ....++|+.++|+-+ |+-|..-. --.|+.+++-+-       +.=+++.-.|.++++-   ...+|+|.
T Consensus       130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~-~~aDt~~~v~~p-------g~GD~~Q~iK~GimEi---aDi~vINK  198 (323)
T COG1703         130 RATREAIKLLDAAGYDVIIVETVGVGQSEVDIA-NMADTFLVVMIP-------GAGDDLQGIKAGIMEI---ADIIVINK  198 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh-hhcceEEEEecC-------CCCcHHHHHHhhhhhh---hheeeEec
Confidence                     013468999999974 66553211 123555555441       1224456778888773   56899999


Q ss_pred             CChhhH
Q 015421          164 GNQHLN  169 (407)
Q Consensus       164 dd~~~~  169 (407)
                      .|..-.
T Consensus       199 aD~~~A  204 (323)
T COG1703         199 ADRKGA  204 (323)
T ss_pred             cChhhH
Confidence            885443

>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase

Probab=94.89  E-value=0.13  Score=41.13  Aligned_cols=98  Identities=16%  Similarity=0.116  Sum_probs=65.8

Q ss_pred             CCCHHHHHHHHhccC----CCcEEEEECCCC-CCCCCC--CCcchHhhhhhccCccEEEEeCCChHHHHHHHHhCCCC-c
Q 015421          277 ATNLEATCTGLMDLK----GHKCVILLGGQA-KVLNGQ--ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLS-I  348 (407)
Q Consensus       277 a~np~s~~~al~~~~----~~~~i~V~g~~~-~~~~~~--~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~~~~-~  348 (407)
                      ..||.++.++++.+.    ++.+++++.+.. |..+.|  ....++.+.+.  +...+++.|..+.+++-+|+-.|+. .
T Consensus         2 vKNP~G~n~~l~~i~~~~~~~~~~~~lNd~~aDG~DvSWiWDvdFE~L~~~--~i~~viv~G~Ra~DmalRLkyAGv~~~   79 (113)
T PF08353_consen    2 VKNPAGFNEVLDMIASDPGPKSVLIALNDNYADGRDVSWIWDVDFEKLADP--NIKQVIVSGTRAEDMALRLKYAGVDEE   79 (113)
T ss_pred             CcCcHHHHHHHHHHHhCCCCceEEEEecCCCCCCccceEEeecCHHHHhcC--CCCEEEEEeeeHHHHHhHeeecCcchH
Confidence            369999999999882    345556666442 222222  11123333211  2578999999999999999888875 3


Q ss_pred             cccccccHHHHHHHHHHhcCCCCEEEEc
Q 015421          349 PCFAVANMKDAVNHARRMATNGDAIVLS  376 (407)
Q Consensus       349 ~~~~~~~~~~a~~~a~~~~~~gd~vL~~  376 (407)
                      ++...+|.++|++.+.....+++.+.+.
T Consensus        80 ~i~v~~d~~~a~~~~~~~~~~~~~~yil  107 (113)
T PF08353_consen   80 KIIVEEDLEEALDAFLIKSDPTDKVYIL  107 (113)
T ss_pred             HeEecCCHHHHHHHHHHhcCCCCcEEEE
Confidence            4667899999999966666677766654

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=92.39  E-value=2.5  Score=40.64  Aligned_cols=33  Identities=27%  Similarity=0.345  Sum_probs=28.4

Q ss_pred             CCCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~   73 (407)
                      .+..+|+|+|+.  ||||.+..+...|+..|.++.
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~   88 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVA   88 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            356699999986  799999999999999998874

>PRK15453 phosphoribulokinase; Provisional

Probab=91.06  E-value=0.31  Score=45.44  Aligned_cols=29  Identities=28%  Similarity=0.398  Sum_probs=24.5

Q ss_pred             CCCcEEEEecCC--ChHhHHHHHHHHHHhcC
Q 015421           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLG   69 (407)
Q Consensus        41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~g   69 (407)
                      ++.++|+|||+.  ||||++..++++|+..+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~   33 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRREN   33 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            467899999985  79999999999997544

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=90.87  E-value=1.4  Score=33.15  Aligned_cols=28  Identities=29%  Similarity=0.442  Sum_probs=23.5

Q ss_pred             EEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421           46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        46 I~VTGT--nGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      |.++|.  .||||++..++..|++.|+++.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~   31 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVL   31 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            556655  6999999999999999988773

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC

Probab=90.42  E-value=0.33  Score=44.03  Aligned_cols=30  Identities=20%  Similarity=0.465  Sum_probs=27.6

Q ss_pred             EEEEecCCChHhHHHHHHHHHHhcCCceee
Q 015421           45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV   74 (407)
Q Consensus        45 ~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~   74 (407)
                      +|+|+|.-||||+..-|+.-|+..|+++.+
T Consensus         1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~   30 (232)
T TIGR03172         1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLV   30 (232)
T ss_pred             CEEEEcCCcHHHHHHHHHHHHHHCCCeEEE
Confidence            589999999999999999999999998853

This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=90.30  E-value=0.8  Score=39.06  Aligned_cols=39  Identities=23%  Similarity=0.321  Sum_probs=32.6

Q ss_pred             CcEEEEecC--CChHhHHHHHHHHHHhcCCceeecccCCcc
Q 015421           43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (407)
Q Consensus        43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (407)
                      +++++|+|.  .||||..+=|-..|++.|+++.+.-+.+..
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~   42 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD   42 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence            589999997  599999999999999999998765554443

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=89.83  E-value=0.45  Score=44.17  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=24.9

Q ss_pred             cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++|+|.  |-.||||++.-|++.|.+.|+++.
T Consensus         2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVl   33 (270)
T cd02040           2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVM   33 (270)
T ss_pred             cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEE
Confidence            344444  889999999999999999998874

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=88.31  E-value=0.6  Score=41.73  Aligned_cols=28  Identities=29%  Similarity=0.378  Sum_probs=24.0

Q ss_pred             EEEEe--cCCChHhHHHHHHHHHHhcCCce
Q 015421           45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        45 ~I~VT--GTnGKTTt~~~l~~iL~~~g~~~   72 (407)
                      +|+|+  |-.||||++.-|++.|.+.|+++
T Consensus         2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rv   31 (212)
T cd02117           2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKV   31 (212)
T ss_pred             EEEEECCCcCcHHHHHHHHHHHHHHCCCcE
Confidence            45565  67899999999999999999876

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=88.05  E-value=0.62  Score=43.46  Aligned_cols=30  Identities=27%  Similarity=0.387  Sum_probs=26.2

Q ss_pred             cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++|+|+  |=.|||||+.-|+..|.+.|+++.
T Consensus         2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVl   33 (273)
T PRK13232          2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKIL   33 (273)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeE
Confidence            567777  678999999999999999999884

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=87.08  E-value=0.65  Score=40.91  Aligned_cols=27  Identities=37%  Similarity=0.664  Sum_probs=23.7

Q ss_pred             EEEEec--CCChHhHHHHHHHHHHhcCCc
Q 015421           45 ILAVTG--TNGKSTVVTFVGQMLNHLGIE   71 (407)
Q Consensus        45 ~I~VTG--TnGKTTt~~~l~~iL~~~g~~   71 (407)
                      +|+|+|  ..||||++..|...|.+.|..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~   29 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence            688997  479999999999999988765

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=86.99  E-value=0.79  Score=42.79  Aligned_cols=30  Identities=27%  Similarity=0.306  Sum_probs=25.6

Q ss_pred             cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++|+|+  |-.|||||+.-|++.|.+.|+++.
T Consensus         2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVL   33 (274)
T PRK13235          2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVM   33 (274)
T ss_pred             CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEE
Confidence            466776  667899999999999999999874

>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]

Probab=86.92  E-value=0.94  Score=40.80  Aligned_cols=30  Identities=37%  Similarity=0.524  Sum_probs=27.5

Q ss_pred             CcEEEEecCC---ChHhHHHHHHHHHHhcCCce
Q 015421           43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        43 ~~~I~VTGTn---GKTTt~~~l~~iL~~~g~~~   72 (407)
                      ++.+.||||.   |||.++..|.+.|+++|+++
T Consensus         2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~   34 (223)
T COG0132           2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSV   34 (223)
T ss_pred             CceEEEEeCCCCccHHHHHHHHHHHHHhCCCee
Confidence            4689999995   99999999999999999886

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=86.75  E-value=1.2  Score=39.37  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=27.0

Q ss_pred             CCCcEEEEec---CCChHhHHHHHHHHHHhcCCce
Q 015421           41 RSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        41 ~~~~~I~VTG---TnGKTTt~~~l~~iL~~~g~~~   72 (407)
                      .+.++|+|++   -.||||++..|+..|...|.++
T Consensus        15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rV   49 (204)
T TIGR01007        15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKT   49 (204)
T ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeE
Confidence            3578899984   4579999999999999998776

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=86.66  E-value=0.57  Score=40.14  Aligned_cols=25  Identities=40%  Similarity=0.678  Sum_probs=19.7

Q ss_pred             cEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421           44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~   72 (407)
                      +.|+||||  .||||+|..|+    ..|+++
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~----~lg~~~   27 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR----ELGYKV   27 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH----HhCCce
Confidence            36999999  57999999887    446665

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=86.61  E-value=1.3  Score=41.31  Aligned_cols=32  Identities=25%  Similarity=0.329  Sum_probs=28.5

Q ss_pred             CCCcEEEEe---cCCChHhHHHHHHHHHHhcCCce
Q 015421           41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        41 ~~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~   72 (407)
                      +..++|+||   |-.||||++..|+..|...|.++
T Consensus       101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~V  135 (274)
T TIGR03029       101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKT  135 (274)
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            467899999   77899999999999999998877

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=86.61  E-value=1  Score=41.00  Aligned_cols=30  Identities=27%  Similarity=0.295  Sum_probs=25.8

Q ss_pred             cEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++|+|+   |-.||||++..|+..|...|+++.
T Consensus         2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vl   34 (231)
T PRK13849          2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVA   34 (231)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence            567776   677899999999999999998874

>PRK10037 cell division protein; Provisional

Probab=86.54  E-value=0.87  Score=41.87  Aligned_cols=29  Identities=24%  Similarity=0.401  Sum_probs=25.2

Q ss_pred             cEEEEe---cCCChHhHHHHHHHHHHhcCCce
Q 015421           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~   72 (407)
                      ++|+|.   |=.||||++.-|++.|.+.|++|
T Consensus         2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rV   33 (250)
T PRK10037          2 AILGLQGVRGGVGTTSITAALAWSLQMLGENV   33 (250)
T ss_pred             cEEEEecCCCCccHHHHHHHHHHHHHhcCCcE
Confidence            467777   77899999999999999999776

>COG2403 Predicted GTPase [General function prediction only]

Probab=86.38  E-value=0.8  Score=43.91  Aligned_cols=31  Identities=35%  Similarity=0.533  Sum_probs=28.4

Q ss_pred             CCcEEEEecC---CChHhHHHHHHHHHHhcCCce
Q 015421           42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        42 ~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~   72 (407)
                      ..|+|+||||   .|||+++.+++.+|++.|+++
T Consensus       125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv  158 (449)
T COG2403         125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRV  158 (449)
T ss_pred             cCceEEEEEeccccchhHHHHHHHHHHHHcCCce
Confidence            4689999998   699999999999999999986

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=86.17  E-value=0.93  Score=44.95  Aligned_cols=32  Identities=31%  Similarity=0.536  Sum_probs=28.8

Q ss_pred             CCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +.++|+|+   |-.|||||+.-|++.|...|++|.
T Consensus       120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVL  154 (405)
T PRK13869        120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVL  154 (405)
T ss_pred             CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceE
Confidence            45899999   889999999999999999999874

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

Probab=86.11  E-value=0.77  Score=40.94  Aligned_cols=30  Identities=37%  Similarity=0.599  Sum_probs=27.0

Q ss_pred             cEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++|.||   |-.|||||++-|...|...|.++.
T Consensus         3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~   35 (272)
T COG2894           3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVV   35 (272)
T ss_pred             eEEEEecCCCCcCccchhHHHHHHHHHcCCeEE
Confidence            578888   889999999999999999998873

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=86.09  E-value=0.91  Score=42.47  Aligned_cols=30  Identities=27%  Similarity=0.344  Sum_probs=25.7

Q ss_pred             cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++|+|.  |=.|||||+.-|++.|.+.|+++.
T Consensus         2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVL   33 (279)
T PRK13230          2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVL   33 (279)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEE
Confidence            456666  678999999999999999999874

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=86.08  E-value=1.1  Score=40.63  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=28.5

Q ss_pred             CcEEEEec--CCChHhHHHHHHHHHHhcCCceeec
Q 015421           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (407)
Q Consensus        43 ~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~~~~   75 (407)
                      +++|+|+|  -.||||++.-|...|+..|+++.+.
T Consensus         1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi   35 (229)
T PRK14494          1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA   35 (229)
T ss_pred             CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence            46899999  7899999999999999999888544

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=86.03  E-value=1.1  Score=42.98  Aligned_cols=32  Identities=25%  Similarity=0.459  Sum_probs=29.2

Q ss_pred             CCcEEEE----ecCCChHhHHHHHHHHHHhcCCcee
Q 015421           42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        42 ~~~~I~V----TGTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ..|+|.|    .|-.|||+++.+|...|++.|++++
T Consensus        48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~   83 (325)
T PRK00652         48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPG   83 (325)
T ss_pred             CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEE
Confidence            5689998    7999999999999999999999874

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=85.75  E-value=1.2  Score=40.67  Aligned_cols=29  Identities=31%  Similarity=0.497  Sum_probs=25.1

Q ss_pred             cEEEEe---cCCChHhHHHHHHHHHHhcCCce
Q 015421           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~   72 (407)
                      ++|+|+   |-.||||++.-|+..|.+.|+++
T Consensus         2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~V   33 (246)
T TIGR03371         2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPV   33 (246)
T ss_pred             cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcE
Confidence            567776   57899999999999999998776

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=85.73  E-value=1  Score=44.33  Aligned_cols=32  Identities=25%  Similarity=0.238  Sum_probs=28.8

Q ss_pred             CCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +.++|+|+   |-.|||||+.-|++.|...|++|.
T Consensus       105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVL  139 (387)
T PHA02519        105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVL  139 (387)
T ss_pred             CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEE
Confidence            36799999   889999999999999999999874

>PHA02518 ParA-like protein; Provisional

Probab=85.72  E-value=1.2  Score=39.52  Aligned_cols=29  Identities=38%  Similarity=0.493  Sum_probs=24.3

Q ss_pred             EEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421           45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        45 ~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +|+|+   |-.||||++..|+..|...|+++.
T Consensus         2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vl   33 (211)
T PHA02518          2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVL   33 (211)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence            45555   778899999999999999998773

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=85.26  E-value=1.1  Score=44.21  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=28.9

Q ss_pred             CCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +.++|+|+   |-.|||||+.-|++.|...|++|.
T Consensus       105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVL  139 (388)
T PRK13705        105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVL  139 (388)
T ss_pred             CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeE
Confidence            45799999   999999999999999999998874

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=85.07  E-value=1.1  Score=41.64  Aligned_cols=30  Identities=33%  Similarity=0.433  Sum_probs=25.4

Q ss_pred             cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++|+|+  |-.|||||+.-|++.|...|+++.
T Consensus         3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVL   34 (270)
T PRK13185          3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVL   34 (270)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            455665  788999999999999999998874

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=84.63  E-value=1.2  Score=41.38  Aligned_cols=28  Identities=36%  Similarity=0.387  Sum_probs=24.1

Q ss_pred             EEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        46 I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      |+|+  |-.||||++.-|++.|...|+++.
T Consensus         3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvl   32 (267)
T cd02032           3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVL   32 (267)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            4555  778999999999999999999874

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=84.62  E-value=1.4  Score=41.60  Aligned_cols=28  Identities=25%  Similarity=0.445  Sum_probs=23.7

Q ss_pred             CCCcEEEEecCC--ChHhHHHHHHHHHHhc
Q 015421           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL   68 (407)
Q Consensus        41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~   68 (407)
                      +...+|||+|.+  ||||++.+|..+|+..
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~   89 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRW   89 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            345699999986  7999999999999853

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=84.14  E-value=1.5  Score=43.25  Aligned_cols=32  Identities=31%  Similarity=0.541  Sum_probs=27.9

Q ss_pred             CCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +.++|+|+   |-.|||||+.-|+..|...|+++.
T Consensus       103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVL  137 (387)
T TIGR03453       103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVL  137 (387)
T ss_pred             CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEE
Confidence            45789888   788999999999999999998873

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=83.62  E-value=1.4  Score=40.85  Aligned_cols=26  Identities=35%  Similarity=0.593  Sum_probs=22.2

Q ss_pred             EEEEecCC--ChHhHHHHHHHHHHhcCC
Q 015421           45 ILAVTGTN--GKSTVVTFVGQMLNHLGI   70 (407)
Q Consensus        45 ~I~VTGTn--GKTTt~~~l~~iL~~~g~   70 (407)
                      +|+|||+.  ||||++.-+.++|+..|.
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~   28 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGI   28 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            58999974  799999999999987663

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=83.53  E-value=1.4  Score=41.71  Aligned_cols=29  Identities=31%  Similarity=0.534  Sum_probs=24.6

Q ss_pred             EEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        45 ~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +|+|.  |-.|||||+..|++.|.+.|+++.
T Consensus         2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVL   32 (296)
T TIGR02016         2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVL   32 (296)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            44444  788999999999999999999874

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=83.12  E-value=1.8  Score=40.49  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=27.7

Q ss_pred             CcEEEEec--CCChHhHHHHHHHHHHhcCCceeec
Q 015421           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (407)
Q Consensus        43 ~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~~~~   75 (407)
                      +++|+|+|  ..||||.+.-|...|++.| ++.+.
T Consensus         1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I   34 (274)
T PRK14493          1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV   34 (274)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence            46899999  8899999999999999999 66543

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=82.97  E-value=1.6  Score=41.20  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=27.5

Q ss_pred             CCcEEEEe--cCCChHhHHHHHHHHHHhcCCceee
Q 015421           42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (407)
Q Consensus        42 ~~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~~   74 (407)
                      ++++|+|.  |-.|||||+.-|+..|.+.|+++..
T Consensus         3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLl   37 (295)
T PRK13234          3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILI   37 (295)
T ss_pred             cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence            45677776  6778999999999999999999843

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=82.48  E-value=1.9  Score=38.29  Aligned_cols=31  Identities=19%  Similarity=0.174  Sum_probs=26.6

Q ss_pred             CCcEEEEe---cCCChHhHHHHHHHHHHh-cCCce
Q 015421           42 SIKILAVT---GTNGKSTVVTFVGQMLNH-LGIEA   72 (407)
Q Consensus        42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~-~g~~~   72 (407)
                      ..++|+|+   |-.||||++..|++.|.. .|.++
T Consensus        34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~V   68 (207)
T TIGR03018        34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTV   68 (207)
T ss_pred             CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeE
Confidence            57899999   678999999999999986 58766

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=82.28  E-value=2.3  Score=36.21  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=27.5

Q ss_pred             CcEEEEec--CCChHhHHHHHHHHHHhcCCceee
Q 015421           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV   74 (407)
Q Consensus        43 ~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~~~   74 (407)
                      +++|+|+|  -.||||.+..|...|...|+++++
T Consensus         1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~   34 (159)
T cd03116           1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAV   34 (159)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence            46899998  679999999999999999988744

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>COG4240 Predicted kinase [General function prediction only]

Probab=82.23  E-value=2.6  Score=37.95  Aligned_cols=51  Identities=20%  Similarity=0.229  Sum_probs=35.4

Q ss_pred             HHhcCCceeeHHHHHHhhCCCCCcEEEEecC--CChHhHHHHHHHHHHhcC-Cce
Q 015421           21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNHLG-IEA   72 (407)
Q Consensus        21 a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g-~~~   72 (407)
                      +.+.-+|.+.+.+-.++.. .+.-+++|.|.  .||||++..|..+|...| .++
T Consensus        29 ~~dl~Lpll~Kiap~~qe~-grPli~gisGpQGSGKStls~~i~~~L~~kg~ert   82 (300)
T COG4240          29 AQDLHLPLLAKIAPWAQER-GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERT   82 (300)
T ss_pred             HHHHHHHHHHhhhhhhhhc-CCceEEEeecCCCCchhhHHHHHHHHHHHhcccce
Confidence            3444445554444444333 34569999997  579999999999999998 354

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=81.98  E-value=1.9  Score=39.49  Aligned_cols=29  Identities=31%  Similarity=0.583  Sum_probs=24.9

Q ss_pred             cEEEEe---cCCChHhHHHHHHHHHHhcCCce
Q 015421           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~   72 (407)
                      ++|+|+   |-.||||++..|+..|...|+++
T Consensus         2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~v   33 (261)
T TIGR01968         2 RVIVITSGKGGVGKTTTTANLGTALARLGKKV   33 (261)
T ss_pred             eEEEEecCCCCccHHHHHHHHHHHHHHcCCeE
Confidence            467776   57899999999999999998876

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>PRK11670 antiporter inner membrane protein; Provisional

Probab=81.72  E-value=2.1  Score=41.91  Aligned_cols=32  Identities=28%  Similarity=0.289  Sum_probs=28.4

Q ss_pred             CCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      -.++|+|+   |-.|||||+.-|+..|.+.|+++.
T Consensus       106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVl  140 (369)
T PRK11670        106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVG  140 (369)
T ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            35799998   778999999999999999999884

>PRK13231 nitrogenase reductase-like protein; Reviewed

Probab=81.58  E-value=1  Score=41.75  Aligned_cols=29  Identities=28%  Similarity=0.311  Sum_probs=24.1

Q ss_pred             cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++|+|.  |-.|||||+.-|++.|.+.| ++.
T Consensus         3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVL   33 (264)
T PRK13231          3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVL   33 (264)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCCC-EEE
Confidence            455555  78899999999999999999 773

>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=81.48  E-value=0.6  Score=47.22  Aligned_cols=123  Identities=22%  Similarity=0.201  Sum_probs=72.2

Q ss_pred             CcCcHHHHHHHhcCCc-eeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCce-eecccCCcc-chhhhhh
Q 015421           12 QLKATGLACLLQSGKR-VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-FVGGNLGNP-LSEAAFH   88 (407)
Q Consensus        12 ~~~~p~l~~a~~~~~~-~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~-~~~g~~g~~-~~~~~~~   88 (407)
                      -..+.....|.+.|.- ++...+.  .......++|.|+||+||+++..+....+...+.++ ...|+-|.. .+.....
T Consensus        34 ~~g~~~~~~a~~~Gavav~~~~~~--~~~~~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~  111 (475)
T COG0769          34 VDGHDFIAGAIAPGAVAVVVEKDI--KLAEAGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQ  111 (475)
T ss_pred             cccccchHhHhhCCCEEEEecccc--cccccCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHH
Confidence            3445555667777744 4444444  222234569999999999999999999998854554 323443332 2211111


Q ss_pred             cccCCCCCCCCcEEEEEecc---cccccCCccccceEEEEecCChhhhccCCCH
Q 015421           89 CIALPSSKPKFQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTM  139 (407)
Q Consensus        89 ~~~~~~~~~~~~~~V~E~g~---~~l~~~~~~~~p~i~viTni~~dHl~~~~t~  139 (407)
                      ...  .....+.++..|..+   +..+ ......|+...++|+..|+++...+.
T Consensus       112 ~~~--~~g~~~~~~gT~g~~~~~~~~~-~~~~tTP~~~~l~~~~~~~~d~~~e~  162 (475)
T COG0769         112 ILK--KLGKKTALIGTEGDELSPGILE-PTGLTTPEALDLQNLLRDLLDRGAEI  162 (475)
T ss_pred             HHH--hcCCceEEEEEEeeeccCCccc-ccCCCCccHHHHHHHHHHHHHcCCcE
Confidence            111  112334555665542   2222 22246799999999999999887643

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=81.11  E-value=1.4  Score=36.85  Aligned_cols=25  Identities=32%  Similarity=0.352  Sum_probs=20.3

Q ss_pred             CCcEEEEecC--CChHhHHHHHHHHHH
Q 015421           42 SIKILAVTGT--NGKSTVVTFVGQMLN   66 (407)
Q Consensus        42 ~~~~I~VTGT--nGKTTt~~~l~~iL~   66 (407)
                      ..|-|.||||  .||||+++.|+..+.
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~~   32 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKTG   32 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHhC
Confidence            3577999999  579999999996553

>TIGR01287 nifH nitrogenase iron protein

Probab=81.03  E-value=2.1  Score=39.86  Aligned_cols=29  Identities=28%  Similarity=0.410  Sum_probs=24.7

Q ss_pred             EEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        45 ~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      .|+|.  |=.||||++.-|+..|.+.|+++.
T Consensus         2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vl   32 (275)
T TIGR01287         2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVM   32 (275)
T ss_pred             eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEE
Confidence            45565  678999999999999999998874

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=80.96  E-value=1.6  Score=39.92  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=23.7

Q ss_pred             EEEEecCCChHhHHHHHHHHHHhcCCce
Q 015421           45 ILAVTGTNGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        45 ~I~VTGTnGKTTt~~~l~~iL~~~g~~~   72 (407)
                      ++++.|-.||||++.-|+..|...|.+|
T Consensus         6 i~s~kGGvG~TTltAnLA~aL~~~G~~V   33 (243)
T PF06564_consen    6 IVSPKGGVGKTTLTANLAWALARLGESV   33 (243)
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHCCCcE
Confidence            4455677899999999999999999766

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=80.75  E-value=2.3  Score=42.19  Aligned_cols=34  Identities=15%  Similarity=0.271  Sum_probs=29.8

Q ss_pred             CcEEEEec--CCChHhHHHHHHHHHHhcCCceeecc
Q 015421           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG   76 (407)
Q Consensus        43 ~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~~~~g   76 (407)
                      +++|+|+|  -.||||.+.-|-..|+..|+++.+.-
T Consensus         1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIK   36 (452)
T PRK14495          1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVK   36 (452)
T ss_pred             CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence            47899999  78999999999999999999986643

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=80.74  E-value=2.6  Score=35.02  Aligned_cols=30  Identities=23%  Similarity=0.375  Sum_probs=23.9

Q ss_pred             cEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      |+|+|.|-  .||||.++.|-..|...|+++.
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~   32 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA   32 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence            57888885  5999999999999999999875

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=80.62  E-value=2.6  Score=40.14  Aligned_cols=32  Identities=22%  Similarity=0.401  Sum_probs=27.9

Q ss_pred             CCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++.+|.+.|.|  |||||..=|++.|.+.|+++.
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vl  171 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVL  171 (340)
T ss_pred             CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEE
Confidence            46688888887  599999999999999998874

>COG3367 Uncharacterized conserved protein [Function unknown]

Probab=80.22  E-value=2.5  Score=39.82  Aligned_cols=61  Identities=20%  Similarity=0.202  Sum_probs=42.4

Q ss_pred             cCcHHH-HHHHhcCCce--eeHHHHHHhh-----C-CCCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421           13 LKATGL-ACLLQSGKRV--MSELDFAAQV-----I-PRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        13 ~~~p~l-~~a~~~~~~~--l~~~~~~~~~-----~-~~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +++|++ ..|.+.|.++  .+++..-...     . ..+.++|.|.||   .||=||+..|...+++.|+++.
T Consensus       109 s~dp~~~k~A~~~G~rl~dvR~p~~~l~~~~tG~~~k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~  181 (339)
T COG3367         109 SDDPEFVKLAERTGVRLDDVRKPPLDLEYLCTGMARKVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAG  181 (339)
T ss_pred             hcChHHHHHHHHcCCeeEeeccCccchhhhccCcccccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccc
Confidence            566766 4556666654  2333322211     1 125679999999   5999999999999999999874

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=80.22  E-value=2.2  Score=39.80  Aligned_cols=31  Identities=23%  Similarity=0.308  Sum_probs=25.4

Q ss_pred             cEEEEe--cCCChHhHHHHHHHHHHh-cCCceee
Q 015421           44 KILAVT--GTNGKSTVVTFVGQMLNH-LGIEAFV   74 (407)
Q Consensus        44 ~~I~VT--GTnGKTTt~~~l~~iL~~-~g~~~~~   74 (407)
                      ++|+|+  |-.|||||+.-|+..|.+ .|+++..
T Consensus         3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLl   36 (275)
T PRK13233          3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFI   36 (275)
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEE
Confidence            466666  677899999999999997 5988743

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=80.02  E-value=4.2  Score=37.63  Aligned_cols=31  Identities=23%  Similarity=0.343  Sum_probs=26.7

Q ss_pred             CCCcEEEEecC--CChHhHHHHHHHHHHhcCCc
Q 015421           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIE   71 (407)
Q Consensus        41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~   71 (407)
                      +..-+|||+||  .||+||++.+..+|+..+-.
T Consensus        80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~  112 (283)
T COG1072          80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPES  112 (283)
T ss_pred             CCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence            34569999999  48999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	407
3lk7_A	451	The Crystal Structure Of Udp-N-Acetylmuramoylalanin		2e-28
1e0d_A	437	Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L		1e-25
2jff_A	445	Crystal Structure Of Murd Ligase In Complex With D-		4e-25
2uag_A	437	Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L		4e-25
2wjp_A	439	Crystal Structure Of Murd Ligase In Complex With D-		5e-25

>pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D- Glutamate (Murd) Ligase From Streptococcus Agalactiae To 1.5a Length = 451

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 186/372 (50%), Gaps = 33/372 (8%)
Query: 28  VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
           V++E++ A  V     +++ +TG+NGK+T  T + ++LN  G    + GN+G P SE   
Sbjct: 99  VLTEVELAYLV--SESQLIGITGSNGKTTTTTXIAEVLNAGGQRGLLAGNIGFPASE--- 153
Query: 88  HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
             +   + K      V E+SS+Q+    K F P ++V+ NL P HL+ H + ++Y   K 
Sbjct: 154 -VVQAANDKDTL---VXELSSFQL-XGVKEFRPHIAVITNLXPTHLDYHGSFEDYVAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
           ++ +   ++   +L F NQ +++ +   +   A I  F    K+D    + K   ++   
Sbjct: 209 NIQNQXSSSDFLVLNF-NQGISKELA--KTTKATIVPFSTTEKVDGAYVQDKQLFYKGEN 265
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
           +  V      ++ V G HN  NA +A ++V  L  G+  + +  T+       HR+Q + 
Sbjct: 266 IXSVD-----DIGVPGSHNVENA-LATIAVAKL-AGISNQVIRETLSNFGGVKHRLQSLG 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
           + + G+++ +DSK+TN+ AT   L      K +++ GG  +       N F++LI  +  
Sbjct: 319 K-VHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDR------GNEFDELIPDITG 371
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
            +  +  G S   + +     G++       +++DAV+ A  +A  GD I+LSP  AS+D
Sbjct: 372 LKHXVVLGESASRVKRAAQKAGVTYS--DALDVRDAVHKAYEVAQQGDVILLSPANASWD 429
Query: 384 EFRNFEHRGMVF 395
            ++NFE RG  F
Sbjct: 430 XYKNFEVRGDEF 441

>pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 169/384 (44%), Gaps = 85/384 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y   K  ++ +    +VN    
Sbjct: 157 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDA 215
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 216 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 256 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 305
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEP 320
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K      S  F  L   
Sbjct: 306 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK------SADFSPLARY 358
Query: 321 LNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM----ATNGDAIVL 375
           LN     +  FG  G           L+     VA   + +  A R+       GD ++L
Sbjct: 359 LNGDNVRLYCFGRDGAQ---------LAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 409
Query: 376 SPGCASFDEFRNFEHRGMVFQELA 399
           SP CAS D+F+NFE RG  F  LA
Sbjct: 410 SPACASLDQFKNFEQRGNEFARLA 433

>pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Sulfonamide Inhibitor Length = 445

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 168/384 (43%), Gaps = 85/384 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y      ++ +    +VN    
Sbjct: 158 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVCVVNADDA 216
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 217 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 257 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 306
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEP 320
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K      S  F  L   
Sbjct: 307 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK------SADFSPLARY 359
Query: 321 LNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM----ATNGDAIVL 375
           LN     +  FG  G           L+     VA   + +  A R+       GD ++L
Sbjct: 360 LNGDNVRLYCFGRDGAQ---------LAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410
Query: 376 SPGCASFDEFRNFEHRGMVFQELA 399
           SP CAS D+F+NFE RG  F  LA
Sbjct: 411 SPACASLDQFKNFEQRGNEFARLA 434

>pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 168/384 (43%), Gaps = 85/384 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y      ++ +    +VN    
Sbjct: 157 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVCVVNADDA 215
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 216 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 256 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 305
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEP 320
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K      S  F  L   
Sbjct: 306 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK------SADFSPLARY 358
Query: 321 LNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM----ATNGDAIVL 375
           LN     +  FG  G           L+     VA   + +  A R+       GD ++L
Sbjct: 359 LNGDNVRLYCFGRDGAQ---------LAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 409
Query: 376 SPGCASFDEFRNFEHRGMVFQELA 399
           SP CAS D+F+NFE RG  F  LA
Sbjct: 410 SPACASLDQFKNFEQRGNEFARLA 433

>pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Rhodanine Inhibitor Length = 439

Iteration: 1
 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 168/384 (43%), Gaps = 85/384 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y      ++ +    +VN    
Sbjct: 157 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVCVVNADDA 215
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 216 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 256 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 305
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEP 320
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K      S  F  L   
Sbjct: 306 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK------SADFSPLARY 358
Query: 321 LNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM----ATNGDAIVL 375
           LN     +  FG  G           L+     VA   + +  A R+       GD ++L
Sbjct: 359 LNGDNVRLYCFGRDGAQ---------LAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 409
Query: 376 SPGCASFDEFRNFEHRGMVFQELA 399
           SP CAS D+F+NFE RG  F  LA
Sbjct: 410 SPACASLDQFKNFEQRGNEFARLA 433

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	407
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	5e-98
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	4e-92
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	3e-19
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	8e-17
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	1e-16
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	3e-16
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	3e-07
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	4e-07
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	2e-05
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	5e-05
3nrs_A	437	Dihydrofolate:folylpolyglutamate synthetase; struc	1e-04

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451

 Score =  298 bits (766), Expect = 5e-98
 Identities = 94/385 (24%), Positives = 175/385 (45%), Gaps = 33/385 (8%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           +   L+    V++E++ A  V     +++ +TG+NGK+T  T + ++LN  G    + GN
Sbjct: 89  VKKALEKQIPVLTEVELAYLVSES--QLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGN 146

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERH 136
           +G P SE          +       V+E+SS+Q+  +    F P ++V+ NL P HL+ H
Sbjct: 147 IGFPASEVV-------QAANDKDTLVMELSSFQLMGVKE--FRPHIAVITNLMPTHLDYH 197

Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG---AFPGVKIDTE 193
            + ++Y   K ++ + M ++   +L F      E  K  +  +          G  +  +
Sbjct: 198 GSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQDK 257

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
                 E         + + ++ V G HN  NA       +    G+  + +  T+    
Sbjct: 258 QLFYKGEN-------IMSVDDIGVPGSHNVENALATIA--VAKLAGISNQVIRETLSNFG 308

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
              HR+Q +   + G+++ +DSK+TN+ AT   L      K +++ GG  +       N 
Sbjct: 309 GVKHRLQSL-GKVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDR------GNE 361

Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
           F++LI  +   + ++  G S   + +     G  +      +++DAV+ A  +A  GD I
Sbjct: 362 FDELIPDITGLKHMVVLGESASRVKRAAQKAG--VTYSDALDVRDAVHKAYEVAQQGDVI 419

Query: 374 VLSPGCASFDEFRNFEHRGMVFQEL 398
           +LSP  AS+D ++NFE RG  F + 
Sbjct: 420 LLSPANASWDMYKNFEVRGDEFIDT 444

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439

 Score =  283 bits (726), Expect = 4e-92
 Identities = 106/404 (26%), Positives = 169/404 (41%), Gaps = 73/404 (18%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           L+    +G  ++ +++   +       I+A+TG+NGKSTV T VG+M    G+   VGGN
Sbjct: 81  LSAAADAGIEIVGDIELFCREAQA--PIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN 138

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERH 136
           +G P                + ++ V+E+SS+Q+E   +       + +LN+T DH++R+
Sbjct: 139 IGLPALMLL---------DDECELYVLELSSFQLETTSS--LQAVAATILNVTEDHMDRY 187

Query: 137 K-TMKNYALTKCHLFSH---------------MVNTKLGLLPFGNQHLNEAIKGHRFNLA 180
              ++ Y   K  ++ +               +       + FG    +  +  H+    
Sbjct: 188 PFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHL-NHQQGET 246

Query: 181 WIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
           W+    G K+                   L +  MK+ G+HNY NA  A    L    G+
Sbjct: 247 WL-RVKGEKV-------------------LNVKEMKLSGQHNYTNALAALA--LADAAGL 284

Query: 241 DVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
              +    ++ L T    PHR ++V  +  GV W++DSKATN+ +T   L  L     + 
Sbjct: 285 PRASS---LKALTTFTGLPHRFEVV-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLH 340

Query: 298 LL-GGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVAN 355
           LL GG  K      S  F  L   LN     +  FG  G  +                  
Sbjct: 341 LLLGGDGK------SADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVA-----EQTET 389

Query: 356 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
           M+ A+         GD ++LSP CAS D+F+NFE RG  F  LA
Sbjct: 390 MEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLA 433

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498

 Score = 88.4 bits (220), Expect = 3e-19
 Identities = 55/261 (21%), Positives = 96/261 (36%), Gaps = 45/261 (17%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS----- 95
            +++++ VTGTNGK+T    + Q    LG  + V G +GN L         +P+      
Sbjct: 106 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKV-----IPTENTTGS 160

Query: 96  ------------KPKFQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
                               +EVSS    Q  +    F    SV  NL+ DHL+ H  M+
Sbjct: 161 AVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKF--AASVFTNLSRDHLDYHGDME 218

Query: 141 NYALTKCHLFSHMVNTKLGLL----PFGNQHLNEA-------IKGHRFNLAWIGAFPGVK 189
           +Y   K  L+S   +    ++      G + L +        ++ H             +
Sbjct: 219 HYEAAKWLLYS-EHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATE 277

Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
           ++     A+    +     +++ H   +MG  N  N  +A  ++L L  G  +  L  T 
Sbjct: 278 VNYHDSGATIRFSSSWGDGEIESH---LMGAFNVSNLLLALATLLAL--GYPLADLLKTA 332

Query: 250 EILRTPPHRMQIVHRDIQGVT 270
             L+    RM++        T
Sbjct: 333 ARLQPVCGRMEVFTAP-GKPT 352

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452

 Score = 81.0 bits (201), Expect = 8e-17
 Identities = 60/294 (20%), Positives = 123/294 (41%), Gaps = 50/294 (17%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN----PLSEAAFHCIALPSSKP 97
             +++A+TG++GK++V      +L+  G   +  GNL N    P++        L    P
Sbjct: 99  PARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMT--------LLRLTP 150

Query: 98  KFQVAVVEVS-SYQMEIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152
           ++  AV+E+  ++Q EI   +      P  ++V NL   HLE   ++   A  K  +FS 
Sbjct: 151 EYDYAVIELGANHQGEI--AWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG 208

Query: 153 MVNTKLGLLPFGNQHLN---EAIKGHR---FNLAWIGA-FPGVKIDTEAKTASFEVPAVG 205
           +    + ++   N         I   +   F+     + F    I   +    F +    
Sbjct: 209 LPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPT 268

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
               + L    + GRHN  N A+AA ++  + +G  ++A+ + +  L+  P R+  +   
Sbjct: 269 GSVDVLLP---LPGRHNIAN-ALAAAAL-SMSVGATLDAIKAGLANLKAVPGRLFPIQLA 323

Query: 266 IQGVTWVDDS--------KATNLEATCTGLMDLKGHKCVIL-----LGGQAKVL 306
            +    +DDS         A  ++     L ++ G++ +++     LG +++  
Sbjct: 324 -ENQLLLDDSYNANVGSMTAA-VQV----LAEMPGYRVLVVGDMAELGAESEAC 371

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Length = 454

 Score = 80.3 bits (199), Expect = 1e-16
 Identities = 64/370 (17%), Positives = 110/370 (29%), Gaps = 71/370 (19%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN----PLSEAAFHCIALPSSKP 97
           ++ + AVTG+NGK+T    +  +L+         GN  N    P +        +     
Sbjct: 99  TVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYT--------VLHMPE 150

Query: 98  KFQVAVVEVSSYQM------EIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKC 147
             +  V+E     M      +I          P  ++V  +   HL   K     A  K 
Sbjct: 151 GTEKLVLE-----MGQDHLGDI--HLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKM 203

Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHR---FNLAWIGAFPGVKIDTEAKTASFEVPAV 204
            +   M +  L L P      +      +   F            +     + +F+   +
Sbjct: 204 QIADGMASGSLLLAPADPIVEDYLPIDKKVVRFGQG--AELEITDLVERKDSLTFKANFL 261

Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
                L +      G++N  NA   A  V  L  GV  E +    + L    +R +    
Sbjct: 262 EQALDLPV-----TGKYNATNAM-IASYV-ALQEGVSEEQIRLAFQHLELTRNRTEWKKA 314

Query: 265 DIQGVTWVDDS--------KATNLEATCTGLMDLKGHKCVIL-----LGGQAKVLNGQES 311
              G   + D         K   LE       +  G K  +L     LG Q+  L+    
Sbjct: 315 A-NGADILSDVYNANPTAMKLI-LETFSAIPANEGGKKIAVLADMKELGDQSVQLH---- 368

Query: 312 NGFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCF------AVANMKDAVNHA 363
               ++I  L+      VI +G     + +           +           +D V   
Sbjct: 369 ---NQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQV 425

Query: 364 RRMATNGDAI 373
           +      D I
Sbjct: 426 KESLGAHDQI 435

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Length = 535

 Score = 79.6 bits (197), Expect = 3e-16
 Identities = 59/262 (22%), Positives = 91/262 (34%), Gaps = 47/262 (17%)

Query: 40  PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSK--- 96
              + ++ +TGT+GK+T    V   L   G  A + G +G  +  A      LPS+    
Sbjct: 143 SERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGA-----DLPSALTTP 197

Query: 97  --PKFQ------------VAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
             P  Q              V+EVSS       +    F   V    NL+ DHL+ H +M
Sbjct: 198 EAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRF--AVGAFTNLSRDHLDFHPSM 255

Query: 140 KNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEAIKGHRF-----NLAWIGAFPGV 188
            +Y   K  LF      +            G + +                A   A    
Sbjct: 256 ADYFEAKASLFDPDSALRARTAVVCIDDDAG-RAMAARAADAITVSAADRPAHWRATDVA 314

Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
             D   +  +   PA GV   + +    + GR+N  N  VA   +  +  GV  E     
Sbjct: 315 PTDAGGQQFTAIDPA-GVGHHIGIR---LPGRYNVANCLVALAILDTV--GVSPEQAVPG 368

Query: 249 IEILRTPPHRMQIVHRDIQGVT 270
           +  +R  P R++ + R  QG  
Sbjct: 369 LREIR-VPGRLEQIDRG-QGFL 388

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} Length = 326

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 22/245 (8%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVG 75
           +  +L  G   +S   + ++ +     +L V GT+GK+T  + +  +L + G+     +G
Sbjct: 83  VEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIG 142

Query: 76  GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-----YFCPTVSVVLNLTP 130
           G   N    A            +    V+E   Y     +K     ++ P  +V+ NL  
Sbjct: 143 GVPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEF 202

Query: 131 DHLERHKTMKNYALTKCHLFSHMVNTK----LGLLPFGNQHLNEAI-KGHRFNLAWIGAF 185
           DH +    +          F ++V T     L +     Q L + + KG    +   G  
Sbjct: 203 DHADIFADLGAIQTQ----FHYLVRTVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTE 258

Query: 186 PGVKIDTEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDV 242
            G +        SF+V   G    +++     +MGRHN  NA   +AA   +G+DI    
Sbjct: 259 HGWQAGEANADGSFDVLLDGKTAGRVKWD---LMGRHNRMNALAVIAAARHVGVDIQTAC 315

Query: 243 EALNS 247
           EAL +
Sbjct: 316 EALGA 320

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 66/429 (15%), Positives = 135/429 (31%), Gaps = 99/429 (23%)

Query: 7   FLLEFQLKATGLACLLQSGKRVMS--ELDF---AAQVIPRSIKILAVTGTNGKSTVVTFV 61
           F+  F  K           K ++S  E+D    +   +  ++++     +  +  V  FV
Sbjct: 29  FVDNFDCKDV-----QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 62  GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
            ++L           N    +S         PS   +  +   +      ++  KY    
Sbjct: 84  EEVLRI---------NYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHL-NEAIKGHR---- 176
           +   L L    L   +  KN  +              G+L  G   +  +    ++    
Sbjct: 134 LQPYLKLR-QALLELRPAKNVLI---D----------GVLGSGKTWVALDVCLSYKVQCK 179

Query: 177 --FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234
             F + W+          E            V+  LQ   +      N+      + S  
Sbjct: 180 MDFKIFWLNL--KNCNSPET-----------VLEMLQ--KLLYQIDPNWT-----SRSDH 219

Query: 235 GLDIGVDVEALNSTI-EILRTPPH-RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG 292
             +I + + ++ + +  +L++ P+    +V  ++       ++KA    A      +L  
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV----Q--NAKA--WNA-----FNL-- 264

Query: 293 HKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP--- 349
             C ILL  + K +    S      I  L+HH   +T      L+ K L      +P   
Sbjct: 265 -SCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 350 C----FAV----ANMKDAVNHARRMAT-NGDAI--VLSPGCASFDEFRNFEHRGMVFQEL 398
                  +     +++D +         N D +  ++    +S +     E+R M F  L
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE---SSLNVLEPAEYRKM-FDRL 378

Query: 399 AFFSKHDTK 407
           + F      
Sbjct: 379 SVFPP-SAH 386

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 35/248 (14%), Positives = 67/248 (27%), Gaps = 59/248 (23%)

Query: 1   MWMLWLFLLEFQLKATGLACLLQSGKRVMSEL--DFAAQVIPRSIKI----LAVTGTNGK 54
            W  W  +   +L     + L         ++    +  V P S  I    L++   +  
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHIPTILLSLIWFDVI 400

Query: 55  STVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE---VSSYQM 111
            + V     ++N L   + V               I L           +    V  Y  
Sbjct: 401 KSDV---MVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALHRSIVDHYN- 454

Query: 112 EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA 171
               K F        +L P +L+       Y       +SH     +G       HL   
Sbjct: 455 --IPKTFDSD-----DLIPPYLD------QY------FYSH-----IG------HHLKNI 484

Query: 172 IKGHRF--------NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
               R         +  ++      KI  ++   +     +  + QL+ +   +      
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQ----KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 224 HNAAVAAL 231
           +   V A+
Sbjct: 541 YERLVNAI 548

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 49/246 (19%), Positives = 77/246 (31%), Gaps = 52/246 (21%)

Query: 47  AVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           AVTGT+GK+T    V  +L HL      F+GG + +              +       V 
Sbjct: 118 AVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNY-----EKGNG----PVVY 168

Query: 105 E----VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
           E       +        F P   ++ N   DHLE +  ++  Y       F  +      
Sbjct: 169 ELDESEEFFS------EFSPNYLIITNARGDHLENYGNSLTRYRSA----FEKISR-NTD 217

Query: 160 LL-----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG-VVSQLQLH 213
           L+          HL +   G                          V   G    +L+L 
Sbjct: 218 LVVTFAEDELTSHLGDVTFG--VKKGTYTL---EMRSASRAEQKAMVEKNGKRYLELKLK 272

Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE----ILRTPPHRMQIVHR-DIQG 268
              V G HN  NA  A +++    +G D+  +   +E    + R    R  I        
Sbjct: 273 ---VPGFHNVLNAL-AVIAL-FDSLGYDLAPVLEALEEFRGVHR----RFSIAFHDPETN 323

Query: 269 VTWVDD 274
           +  +DD
Sbjct: 324 IYVIDD 329

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Length = 524

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 55/277 (19%), Positives = 103/277 (37%), Gaps = 57/277 (20%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEA----AFHCIA-LPSSKPK 98
           +AV GT+GK+T  T +  +L++ GI+A   +GG      ++      F   + L + K  
Sbjct: 125 IAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLGTEKDD 184

Query: 99  FQVA------VVEV----SSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
              +      V+E     S++  +     ++ P  +++ NL  DH +    +        
Sbjct: 185 SDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQTQ-- 242

Query: 148 HLFSHMVNTK----LGLLPFGNQHLNEAI------KGHRFNLAWIGAFPGVKIDTEAKT- 196
             F HMV         ++P     L + +         R ++         + D+  +  
Sbjct: 243 --FHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENS 300

Query: 197 -----------------ASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLD 237
                            + F V          L N  + G HN +NA  A+AA   +G+ 
Sbjct: 301 QAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIGVS 360

Query: 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274
           +     AL++   I R    RM+++  D+  +   DD
Sbjct: 361 VKTACAALSAFAGIKR----RMELIG-DVNDILVFDD 392

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 52/256 (20%), Positives = 88/256 (34%), Gaps = 60/256 (23%)

Query: 47  AVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           AV GT+GK+T    +  +     ++     GG + +    A      L +S+      + 
Sbjct: 122 AVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAH-----LGASR----YLIA 172

Query: 105 E----VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
           E     +S+       +  P VSVV N+ PDH++ ++   +    T    +   ++    
Sbjct: 173 EADESDASFL------HLQPMVSVVTNMEPDHMDTYEGDFEKMKAT----YVKFLH---- 218

Query: 160 LLPFG--------NQHLNEAIKGHRFNLAWIGAFPG-----VKIDTEAKTASFEVPAVG- 205
            LPF         +  L E +      +   G            +       + V     
Sbjct: 219 NLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNN 278

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE----ILRTPPHRMQI 261
               + L+   V G+HN  NA  AAL+V   + G+  EA+   +       R    R   
Sbjct: 279 ERINVLLN---VPGKHNALNAT-AALAV-AKEEGIANEAILEALADFQGAGR----RFDQ 329

Query: 262 ---VHRDIQGVTWVDD 274
                R    V  VDD
Sbjct: 330 LGEFIRPNGKVRLVDD 345

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Length = 491

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 50/261 (19%), Positives = 88/261 (33%), Gaps = 65/261 (24%)

Query: 47  AVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           A+ GT+GK+T    V  +    G++     GG +      A      L   +      + 
Sbjct: 123 AIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHAR-----LGHGR----YLIA 173

Query: 105 EV----SSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
           E     +S+       +  P V++V N+  DH++ ++   +N   T    F + ++    
Sbjct: 174 EADESDASFL------HLQPMVAIVTNIEADHMDTYQGDFENLKQT----FINFLH---- 219

Query: 160 LLPFG--------NQHLNEAIKGHRFNLAWIGAFPG-----VKIDTEAKTASFEVPAVG- 205
            LPF         +  + E +          G                    F +     
Sbjct: 220 NLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDK 279

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE----ILRTPPHRMQI 261
              ++ L+     GRHN  NAA AA++V   + G+D EA+   +E      R    R   
Sbjct: 280 EPMRVTLN---APGRHNALNAA-AAVAV-ATEEGIDDEAILRALESFQGTGR----RFDF 330

Query: 262 V--------HRDIQGVTWVDD 274
           +        +        VDD
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDD 351

>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* Length = 437

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 20/173 (11%)

Query: 218 MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD---- 273
           +      NAA A   +   ++ +  EA+   ++    P  R Q+V    Q +  +D    
Sbjct: 265 VPNVPLANAATALAVLHYSELPLSDEAIRQGLQAASLPG-RFQVVSE--QPLLILDVAHN 321

Query: 274 ----DSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVIT 329
                     L      +   K  K   ++G    +L+ ++  G    +           
Sbjct: 322 PHAARYLVNRLAQVINPVNASKQGKVRAVVG----MLSDKDIAGTLACLSERVDEWYCAP 377

Query: 330 FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 382
                      L  + +S   F  ++++ A   A + A   D +++   C SF
Sbjct: 378 LEGPRGASAGQLAEHLVSARQF--SDVETAWRQAMQDADTQDVVIV---CGSF 425

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	407
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	100.0
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	100.0
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	100.0
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	100.0
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	100.0
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	100.0
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	100.0
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	100.0
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	100.0
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	100.0
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	100.0
3nrs_A	437	Dihydrofolate:folylpolyglutamate synthetase; struc	100.0
1jbw_A	428	Folylpolyglutamate synthase; FPGS folate AMPPCP te	100.0
2vos_A	487	Folylpolyglutamate synthase protein FOLC; ligase,	100.0
1o5z_A	442	Folylpolyglutamate synthase/dihydrofolate synthas;	100.0
1w78_A	422	FOLC bifunctional protein; DHFS, dihydrofolate syn	100.0
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	100.0
3mvn_A	163	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M	99.78
2g0t_A	350	Conserved hypothetical protein; structural genomic	94.23
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.95
3fwy_A	314	Light-independent protochlorophyllide reductase I	92.45
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	91.72
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	90.59
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	90.56
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	90.44
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	89.69
2obn_A	349	Hypothetical protein; structural genomics, joint c	88.99
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	87.96
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	87.69
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	87.26
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	87.24
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	87.21
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	86.88
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	85.66
3end_A	307	Light-independent protochlorophyllide reductase ir	85.33
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	85.31
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	84.7
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	84.56
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	84.45
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	84.44
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	84.25
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	84.03
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	83.56
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	82.92
3cwq_A	209	Para family chromosome partitioning protein; alpha	81.74
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	81.46
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	81.0
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	80.68

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=100.00  E-value=1.5e-69  Score=540.93  Aligned_cols=376  Identities=25%  Similarity=0.387  Sum_probs=321.5

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~   82 (407)
                      -+||++|+++++||++++|+++|+|++++++++++..  +.++|+||||||||||++||+++|+..|.++++.||+|.|+
T Consensus        74 d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~--~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~~  151 (451)
T 3lk7_A           74 CYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVS--ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPA  151 (451)
T ss_dssp             EEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHC--CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSCH
T ss_pred             CEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChhh
Confidence            5799999999999999999999999999999999987  45999999999999999999999999999999999999998


Q ss_pred             hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEe
Q 015421           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (407)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n  162 (407)
                      +....       ...+.+++|+|+|+++++.++. ++|+++|||||++||+|+|||+|+|+++|.+|++.+++++.+|+|
T Consensus       152 ~~~~~-------~~~~~d~~VlE~~s~~l~~~~~-~~p~iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~n  223 (451)
T 3lk7_A          152 SEVVQ-------AANDKDTLVMELSSFQLMGVKE-FRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLN  223 (451)
T ss_dssp             HHHTT-------TCCTTCEEEEECCHHHHTTCSS-CCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEEE
T ss_pred             hhhhh-------cCCCCCEEEEECCccccccccc-cCCCEEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence            76532       1246789999999988887654 899999999999999999999999999999999998889999999


Q ss_pred             CCChhhHHHHhccccceEEeecCCCc-ccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCC
Q 015421          163 FGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD  241 (407)
Q Consensus       163 ~dd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~  241 (407)
                      .|||.+..++.....++++|+.+... .....  ...+.+.  +. .......++++|.||++|+++|+  +++..+|++
T Consensus       224 ~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~--~~-~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~  296 (451)
T 3lk7_A          224 FNQGISKELAKTTKATIVPFSTTEKVDGAYVQ--DKQLFYK--GE-NIMSVDDIGVPGSHNVENALATI--AVAKLAGIS  296 (451)
T ss_dssp             TTSHHHHHHHTTCSSEEEEEESSSCCSSEEEE--TTEEEET--TE-EEEEGGGSSSCSHHHHHHHHHHH--HHHHHHTCC
T ss_pred             CCcHHHHHHHhhcCCeEEEEccCCCcCCEEEE--CCEEEEC--Cc-EEeeccccCCCcHHHHHHHHHHH--HHHHHcCCC
Confidence            99999988887777788888865322 00000  1122222  21 11223579999999999999999  899999999


Q ss_pred             HHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhc
Q 015421          242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL  321 (407)
Q Consensus       242 ~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l  321 (407)
                      ++.|.++|++|++++||||++. ..+++.+|||||||||+|+.++++.++++|+++|+|++. ++.     .++++++.+
T Consensus       297 ~~~i~~~L~~f~~~~gR~e~v~-~~~g~~vi~D~~a~np~a~~~al~~~~~~rii~I~g~~~-r~~-----d~~~l~~~l  369 (451)
T 3lk7_A          297 NQVIRETLSNFGGVKHRLQSLG-KVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLD-RGN-----EFDELIPDI  369 (451)
T ss_dssp             HHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHHTSCGGGEEEEECCSC-CSC-----CCGGGHHHH
T ss_pred             HHHHHHHHHhCCCCCCcEEEEe-eeCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEEEECCCC-CCC-----CHHHHHHHH
Confidence            9999999999999999999996 367899999999999999999999997656888888653 222     245677666


Q ss_pred             cCccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhh
Q 015421          322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFF  401 (407)
Q Consensus       322 ~~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~  401 (407)
                      .+.|.++++|+.+..+.+.++..+.  .+.+++++++|++.+.+.+++||+||++|+|+||++|++|++||+.|+++|+.
T Consensus       370 ~~~d~vi~~G~~~~~l~~~~~~~g~--~~~~~~~~~eAv~~a~~~a~~gD~VLlspa~as~d~f~~~~~RG~~F~~~v~~  447 (451)
T 3lk7_A          370 TGLKHMVVLGESASRVKRAAQKAGV--TYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDMYKNFEVRGDEFIDTFES  447 (451)
T ss_dssp             TTCSEEEECSTTHHHHHHHHHHTTC--CEEECSSHHHHHHHHHHHCCTTCEEEECCSSCSTTTSSSHHHHHHHHHHHHHH
T ss_pred             HhcCEEEEECCCHHHHHHHHHhcCC--ceEEeCCHHHHHHHHHHhCCCCCEEEEcCcCcchhhhhCHHHHHHHHHHHHHH
Confidence            6688999999999999988876653  46678999999999999999999999999999999999999999999999999


Q ss_pred             hcc
Q 015421          402 SKH  404 (407)
Q Consensus       402 l~~  404 (407)
                      |+.
T Consensus       448 l~~  450 (451)
T 3lk7_A          448 LRG  450 (451)
T ss_dssp             HHC
T ss_pred             hhc
Confidence            864

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=100.00  E-value=2e-64  Score=502.53  Aligned_cols=367  Identities=29%  Similarity=0.426  Sum_probs=304.8

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~   82 (407)
                      -+||++++++++||++..|++++++++++++++++.+  +.++|+||||||||||++||+++|++.|+++++.||+|.|+
T Consensus        66 d~vV~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~--~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gnig~~~  143 (439)
T 2x5o_A           66 DLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPA  143 (439)
T ss_dssp             SEEEECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESSSBCH
T ss_pred             CEEEeCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecccCHHH
Confidence            3789999999999999999999999999999999886  48999999999999999999999999999999999999998


Q ss_pred             hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccC-CCHHHHHHHHHHhhcccCCCceEEE
Q 015421           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL  161 (407)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~-~t~e~i~~~K~~i~~~~~~~~~~v~  161 (407)
                      +...         ..+.+++|+|+|+++++.++. ++|+++|||||++||+++| +|+|+|+++|.++++   +++.+|+
T Consensus       144 ~~~~---------~~~~d~~VlE~~~~~l~~~~~-~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~---~~~~~V~  210 (439)
T 2x5o_A          144 LMLL---------DDECELYVLELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE---NAKVCVV  210 (439)
T ss_dssp             HHHC---------CTTCCEEEEECCHHHHHTCCC-CCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGT---TCSEEEE
T ss_pred             HHHh---------CCCCCEEEEECCchhhccccc-CCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHc---CCCEEEE
Confidence            7652         123588999999998988765 8999999999999999999 899999999999998   3689999


Q ss_pred             eCCChhhHHHHhccccceEEeecCCC-cc-cccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcC
Q 015421          162 PFGNQHLNEAIKGHRFNLAWIGAFPG-VK-IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG  239 (407)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lg  239 (407)
                      |.|||.+..+... ..++++|+.+.. +. +...  ...+.+. .+. ..+....++++|.||++|+++|+  +++..+|
T Consensus       211 n~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~l~l~G~hn~~NalaA~--a~~~~lg  283 (439)
T 2x5o_A          211 NADDALTMPIRGA-DERCVSFGVNMGDYHLNHQQ--GETWLRV-KGE-KVLNVKEMKLSGQHNYTNALAAL--ALADAAG  283 (439)
T ss_dssp             ETTCGGGSCSCCC-SSCCEEECSSSSSEEEEEET--TEEEEEE-TTE-EEEEGGGCSCCSHHHHHHHHHHH--HHHHHTT
T ss_pred             eCCCHHHHHHhhc-CCcEEEEeCCCcCcCcEEEE--CCEEEEe-CCc-EEEeehhcCCCCHHHHHHHHHHH--HHHHHcC
Confidence            9999987665543 456788875421 00 1000  0112221 111 11112478999999999999999  8899999


Q ss_pred             CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCC-CcEEEEECCCCCCCCCCCCcchHhhh
Q 015421          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLI  318 (407)
Q Consensus       240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~-~~~i~V~g~~~~~~~~~~~~~~~~~~  318 (407)
                      ++++.|.++|++|++++||||++. ..+++.+|||||||||+|+.++++.++. +|+++|+|++.+.++      +++++
T Consensus       284 i~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~vi~Ds~a~np~a~~~al~~l~~~~~~i~v~g~~~k~~~------~~~~~  356 (439)
T 2x5o_A          284 LPRASSLKALTTFTGLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSAD------FSPLA  356 (439)
T ss_dssp             CCHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCTTCC------CGGGG
T ss_pred             CCHHHHHHHHHhCCCCCCceEEEE-EECCEEEEEeCCCCCHHHHHHHHHhCCcCCCEEEEEcCCCCCCC------HHHHH
Confidence            999999999999999999999996 3578899999999999999999999874 689999998744332      34566


Q ss_pred             hhccC-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHH
Q 015421          319 EPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE  397 (407)
Q Consensus       319 ~~l~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~  397 (407)
                      +.+.. .|.++++|+....+.+ +...    .+..++++++|++.+.+.+++||+||++++|+||++|++|++||+.|++
T Consensus       357 ~~l~~~~d~vi~~g~~~~~~~~-~~~~----~~~~~~~~~~a~~~~~~~~~~gd~vL~~~a~~S~~~~~~~~~RG~~f~~  431 (439)
T 2x5o_A          357 RYLNGDNVRLYCFGRDGAQLAA-LRPE----VAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFAR  431 (439)
T ss_dssp             GGSCSSSEEEEEESTTHHHHHT-TSGG----GEEECSSHHHHHHHHGGGCCTTCEEEECCSSBSTTTSSSHHHHHHHHHH
T ss_pred             HHHHhhCCEEEEECCCHHHHHH-HhcC----CccccCCHHHHHHHHHHhCCCCCEEEEcchhhHhhhhhCHHHHHHHHHH
Confidence            66654 7889999998877765 3221    2446789999999999999999999999999999999999999999999


Q ss_pred             HHhhhc
Q 015421          398 LAFFSK  403 (407)
Q Consensus       398 ~~~~l~  403 (407)
                      +|+.|.
T Consensus       432 ~v~~l~  437 (439)
T 2x5o_A          432 LAKELG  437 (439)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999985

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=100.00  E-value=5e-58  Score=462.02  Aligned_cols=360  Identities=15%  Similarity=0.231  Sum_probs=280.6

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCc-ee-ecccCCc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AF-VGGNLGN   80 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~-~~-~~g~~g~   80 (407)
                      -+||+||+++++||++++|+++|+|+++++++++++. +..++|+||||||||||++|++++|+..|++ +. ++|+.+.
T Consensus        83 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~~  161 (494)
T 4hv4_A           83 SVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELM-RYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVKA  161 (494)
T ss_dssp             SEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred             CEEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHh-cCCCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCcccc
Confidence            4799999999999999999999999999999999887 5568999999999999999999999999985 33 4444332


Q ss_pred             cchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccC-CCHHHHHHHHHHhhcccCCCceE
Q 015421           81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG  159 (407)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~-~t~e~i~~~K~~i~~~~~~~~~~  159 (407)
                      ......         ..+.+++|+|+|++....  ..++|+++|||||++||+|+| +|+|+|+++|.++++.+++++.+
T Consensus       162 ~g~~~~---------~~~~d~~VlE~~e~~~s~--~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~  230 (494)
T 4hv4_A          162 AGTHAR---------LGSSRYLIAEADESDASF--LHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA  230 (494)
T ss_dssp             TTEEEE---------CCSSSEEEEECCCGGGGG--GGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEE
T ss_pred             cccccc---------cCCCcEEEEEcccccccc--ccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEE
Confidence            211111         135688999999654322  347999999999999999999 79999999999999988888999


Q ss_pred             EEeCCChhhHHHHhccccceEEeecCCCccccc-----ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHH
Q 015421          160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (407)
Q Consensus       160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~  234 (407)
                      |+|.|||.+..+......++++|+......+..     ......|.+...+.  ....+.++++|.||++|+++|+  ++
T Consensus       231 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~--~~~~~~l~l~G~hnv~NalaAi--a~  306 (494)
T 4hv4_A          231 VMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDK--PLIEVTLNAPGRHNALNAAAAV--AV  306 (494)
T ss_dssp             EEETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTS--CCEEEEESSCSHHHHHHHHHHH--HH
T ss_pred             EEECCCHHHHHHHHhcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCc--eEEEEEecCCcHHHHHHHHHHH--HH
Confidence            999999999988877667888888653222111     11112233222211  0112468999999999999999  89


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCceeEEeeec---------CCEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEECC
Q 015421          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI---------QGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGG  301 (407)
Q Consensus       235 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~---------~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~g~  301 (407)
                      +..+|++.+.|.++|++|++++||||++.. .         +++.+||| |||||+++.++++.+    +++|+++|+|+
T Consensus       307 a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~-~~~~~~~~~~~g~~vi~D-yaHnp~~i~a~l~al~~~~~~~rii~V~g~  384 (494)
T 4hv4_A          307 ATEEGIEDEDILRALVGFQGTGRRFDFLGN-FPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAGWPDKRIVMLFQP  384 (494)
T ss_dssp             HHHHTCCHHHHHHHHHHCCCBTTSSEEEEE-EESHHHHSCSSEEEEEEE-CCCSHHHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCCccEEeee-ccccccccCCCCeEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEEcC
Confidence            999999999999999999999999999963 3         47899999 599999999988765    34578899986


Q ss_pred             CCCCCCCCCCcchHhhhhhccCccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCC
Q 015421          302 QAKVLNGQESNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG  370 (407)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~g  370 (407)
                      +.+..   .+..+.+++..+...|.++++           |..++.+.+.++..+. ..+.+++|+++|++.+.+.+++|
T Consensus       385 ~~~~r---~k~~~~~~~~~~~~aD~vilt~~~~~~e~p~~g~~~~~l~~~~~~~g~-~~~~~~~~~~eAv~~a~~~a~~g  460 (494)
T 4hv4_A          385 HRYTR---TRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGADSRALCRTIRNRGK-LDPILVPDSESAPEMLAQILNGE  460 (494)
T ss_dssp             BCHHH---HHHTHHHHHHHHTTSSEEEEECCBCTTCCCCTTCSHHHHHHHHHTTTS-CCCEEECCTTTHHHHHHHHCCTT
T ss_pred             CCCCc---hHHHHHHHHHHHhcCCEEEEeCCcCCccCCcCCccHHHHHHHHHhhCC-CCeEEeCCHHHHHHHHHHhCCCC
Confidence            54221   122456677766667888874           4456788888876542 24567889999999999999999


Q ss_pred             CEEEEcCCCCCcccc
Q 015421          371 DAIVLSPGCASFDEF  385 (407)
Q Consensus       371 d~vL~~~G~~s~~~~  385 (407)
                      |+||++ |+|||+.+
T Consensus       461 DvVL~~-GaG~~~~~  474 (494)
T 4hv4_A          461 DLILVQ-GAGNIGKI  474 (494)
T ss_dssp             EEEEEE-CSSTHHHH
T ss_pred             CEEEEE-CCCCHHHH
Confidence            999986 88888654

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=2.9e-57  Score=459.25  Aligned_cols=372  Identities=19%  Similarity=0.216  Sum_probs=272.2

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCcee-e-c-----
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-V-G-----   75 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~-~-~-----   75 (407)
                      -+||+||+++++||++++|+++|+|++++++++++.+.+..++|+||||||||||++|++++|++.|+++. . +     
T Consensus        82 d~vV~Spgi~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~~  161 (524)
T 3hn7_A           82 DLVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLV  161 (524)
T ss_dssp             SEEEECTTCCTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCC
T ss_pred             CEEEECCCcCCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEecc
Confidence            47999999999999999999999999999999998532467899999999999999999999999998753 2 2     


Q ss_pred             --------ccCCccchhhhhhcccCCCCCCCCcEEEEEeccccccc---CCc--cccceEEEEecCChhhhccCCCHHHH
Q 015421           76 --------GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI---PNK--YFCPTVSVVLNLTPDHLERHKTMKNY  142 (407)
Q Consensus        76 --------g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~---~~~--~~~p~i~viTni~~dHl~~~~t~e~i  142 (407)
                              +++|.|.......  .....+.+++++|+|+|+++...   ...  .++|+++|||||++||+|+|||+|+|
T Consensus       162 ~~T~~nln~~ig~~~~~~~~~--~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~gs~e~y  239 (524)
T 3hn7_A          162 NTTDTNLQQVFAHSSYLGTEK--DDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAI  239 (524)
T ss_dssp             CSSCHHHHHHTTSSEECCCCC--CSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC------CHHHH
T ss_pred             ccCchhhhhhhhhHHhhCCCc--ccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccCCHHHH
Confidence                    2344443211000  00000234689999999865432   211  37999999999999999999999999


Q ss_pred             HHHHHHhhcccCCCceEEEeCCChhhHHHHhc-cccceEEeecCC----------------------Cccccc-ccccce
Q 015421          143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFP----------------------GVKIDT-EAKTAS  198 (407)
Q Consensus       143 ~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~-~~~~~~  198 (407)
                      +++|.++++.+++++.+|+|.|||.+..+... ...++++||...                      ++.... ......
T Consensus       240 ~~aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~  319 (524)
T 3hn7_A          240 QTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQ  319 (524)
T ss_dssp             HHHHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTTE
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceE
Confidence            99999999999889999999999998887643 345677887531                      111000 001122


Q ss_pred             eEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCC
Q 015421          199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT  278 (407)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~  278 (407)
                      |.+...+....+..+.++++|.||++|+++|+  +++..+|++.+.|.++|++|++++||||++. ..+++.+|+|+ +|
T Consensus       320 f~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~g~~vi~D~-ah  395 (524)
T 3hn7_A          320 FTVSFNDNKEATALVNWSMSGLHNVNNALVAI--AAAYNIGVSVKTACAALSAFAGIKRRMELIG-DVNDILVFDDF-AH  395 (524)
T ss_dssp             EEEEETTEEEEEEEEECSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCCCBTTSSEEEE-EETTEEEEEEC-CC
T ss_pred             EEEEECCccceeEEEEeCCCcHHHHHhHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCceEEEEE-ecCCcEEEEEC-CC
Confidence            33222222100223579999999999999999  8999999999999999999999999999996 35789999997 79


Q ss_pred             CHHHHHHHHhccC----CCcEEEEECCCC---CCCCCCCCcchHhhhhhccCccEEEEeCCC-----hHHHHHHHHhCCC
Q 015421          279 NLEATCTGLMDLK----GHKCVILLGGQA---KVLNGQESNGFEKLIEPLNHHRCVITFGYS-----GVLIWKTLVNNGL  346 (407)
Q Consensus       279 np~s~~~al~~~~----~~~~i~V~g~~~---~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~-----~~~~~~~l~~~~~  346 (407)
                      ||+++.++++.+.    ++|+++|+|++.   +.++     ..+.+...+...|.++++|+.     +..+.+.+.....
T Consensus       396 np~~~~a~l~~l~~~~~~~r~i~V~g~~~~~~~~g~-----~~~~~~~~~~~aD~vil~~~~~r~~~~~~l~~~~~~~~~  470 (524)
T 3hn7_A          396 HPTAITTTLDGAKKKLADRRLWAIIEPRSNTMKMGI-----HQDSLAQSATLADHTLWYEPTGLEWGLKEVIDNATIANP  470 (524)
T ss_dssp             SHHHHHHHHHHHHHHHTTSCEEEEEECCCCSSCCSC-----CTTHHHHHTTTSSEEEEECCTTCCCSHHHHHHHHHHHCG
T ss_pred             CHHHHHHHHHHHHhhcCCCCEEEEECCCCcchhhhh-----hHHHHHHHHhcCCEEEEcCCCCCCCCHHHHHHHHHhhcc
Confidence            9999999988763    468999999863   2222     233444445557899998865     4556555532100


Q ss_pred             -CccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCccccc
Q 015421          347 -SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR  386 (407)
Q Consensus       347 -~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~  386 (407)
                       ...+.+++|+++|++.+.+.+++||+||++ |+|||+.+.
T Consensus       471 ~~~~~~~~~~~~eai~~~~~~a~~gD~VLv~-GaG~~~~v~  510 (524)
T 3hn7_A          471 SIGSQQVLSSVDDIIKHICTHAKAGDAIVIM-SNGGFEGIH  510 (524)
T ss_dssp             GGCCEEEESCHHHHHHHHHHHCCTTCEEEEE-ESSCGGGHH
T ss_pred             CCCCeEEECCHHHHHHHHHHhCCCCCEEEEE-cCCCHHHHH
Confidence             124567899999999999999999999986 899998753

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*

Probab=100.00  E-value=1.7e-58  Score=461.87  Aligned_cols=364  Identities=18%  Similarity=0.166  Sum_probs=278.9

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc----CC
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG   79 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g   79 (407)
                      .||.++.++ +.|.+.  +++..++|++++..++.. .+.++|+||||||||||++||+++|+..|..+.+.|+    +|
T Consensus        65 ~vv~~~~~~-~~p~i~--v~~~~~al~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~s~g~~n~~ig  140 (454)
T 2am1_A           65 VTLSEKEVS-NHPYIL--VDDVLTAFQSLASYYLEK-TTVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIG  140 (454)
T ss_dssp             EEEESSCCC-SSCEEE--CSCHHHHHHHHHHHHHHH-HCCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTH
T ss_pred             EEEECCCCC-CCCEEE--ECCHHHHHHHHHHHHhhC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeecCCccCcccc
Confidence            356666554 455433  344556667777665532 1678999999999999999999999999976677777    45


Q ss_pred             ccchhhhhhcccCCCCCCCCcEEEEEecc-ccccc--CCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCC
Q 015421           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSS-YQMEI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT  156 (407)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~g~-~~l~~--~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~  156 (407)
                      .|++...+        ..+++++|+|+|+ +.++.  ....++|+++|||||++||+++|||+|+|+++|++|++.++++
T Consensus       141 ~p~t~~~~--------~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~~  212 (454)
T 2am1_A          141 LPYTVLHM--------PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASG  212 (454)
T ss_dssp             HHHHHHTC--------CTTCCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTT
T ss_pred             hHHHHhcC--------CCCCcEEEEEcCCCCcchHHHHhCccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhcccC
Confidence            55543322        4578999999996 44442  2223799999999999999999999999999999999988888


Q ss_pred             ceEEEeCCChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeee----ecccCCCChhHHHHHHHHHHH
Q 015421          157 KLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQ----LHNMKVMGRHNYHNAAVAALS  232 (407)
Q Consensus       157 ~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~G~~~~~Nal~A~~~  232 (407)
                      +.+|+|.|| ....++.. ..++++|+......+      ..+.....+..+.+.    .+.++++|.||++|+++|+  
T Consensus       213 ~~~V~n~dd-~~~~~~~~-~~~~~~~g~~~~~d~------~~i~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~--  282 (454)
T 2am1_A          213 SLLLAPADP-IVEDYLPI-DKKVVRFGQGAELEI------TDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIAS--  282 (454)
T ss_dssp             CEEEEESCG-GGGGGCCS-SSEEEEESTTSSBCE------EEEEECSSCEEEEETTCSSEEEESSCCHHHHHHHHHHH--
T ss_pred             CEEEEEcHH-HHHHHHhc-CCcEEEEeCCCCCce------eeeEEeCCceEEEEEecCcEEEecCCCHHHHHHHHHHH--
Confidence            999999999 77666544 457888885432111      011111112222221    2468999999999999999  


Q ss_pred             HHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC---C---CcEEEEECCCCCCC
Q 015421          233 VLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---G---HKCVILLGGQAKVL  306 (407)
Q Consensus       233 a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~---~~~i~V~g~~~~~~  306 (407)
                      +++..+|++++.|.++|++|+++|||||++. ..++..+|||+|||||+|++++++.+.   .   +|+++|+|+|.+.|
T Consensus       283 a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~~~~~~i~V~G~~~e~G  361 (454)
T 2am1_A          283 YVALQEGVSEEQIRLAFQHLELTRNRTEWKK-AANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELG  361 (454)
T ss_dssp             HHHHHTTCCHHHHHHHGGGCCCCCCCSCEEC-CTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCC
T ss_pred             HHHHHcCCCHHHHHHHHHhCCCccCCeeEEE-CCCCeEEEEeCCCCCHHHHHHHHHHHHhcccccCCCEEEEECCchhcC
Confidence            8899999999999999999999999999995 245788999999999999999998874   2   68899999998888


Q ss_pred             CCCCCcchHhhhhhccC--ccEEEEeCCChHHHHHHHHhC---CCCcccc---ccccHHHHHHHHHHhcCCCCEEEEcCC
Q 015421          307 NGQESNGFEKLIEPLNH--HRCVITFGYSGVLIWKTLVNN---GLSIPCF---AVANMKDAVNHARRMATNGDAIVLSPG  378 (407)
Q Consensus       307 ~~~~~~~~~~~~~~l~~--~~~v~~~g~~~~~~~~~l~~~---~~~~~~~---~~~~~~~a~~~a~~~~~~gd~vL~~~G  378 (407)
                      +++. ..++++++.+..  .|.++++|+++..+.+.+...   +....+.   .++|+++|++.+.+.+++||+||++ |
T Consensus       362 ~~~~-~~~~~~~~~~~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~a~~gd~VLv~-G  439 (454)
T 2am1_A          362 DQSV-QLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLK-G  439 (454)
T ss_dssp             TTHH-HHHHHGGGGCCTTTCSEEEEEESTTHHHHHHHHHHSCTTCEEEEEBSSSCBTHHHHHHHHHHHCCTTEEEEEE-S
T ss_pred             cHHH-HHHHHHHHHHHhcCCCEEEEECcCHHHHHHHHhhccccCcceeeecccCCCCHHHHHHHHHHhCCCCCEEEEE-e
Confidence            7663 357788887753  789999999888877755432   1100111   4579999999999999999999997 5


Q ss_pred             CCCcccccChhhhhHHHHHHHhhhc
Q 015421          379 CASFDEFRNFEHRGMVFQELAFFSK  403 (407)
Q Consensus       379 ~~s~~~~~~~~~r~~~~~~~~~~l~  403 (407)
                                 ||++.||++++.|+
T Consensus       440 -----------S~~~~~e~~~~~l~  453 (454)
T 2am1_A          440 -----------SNSMNLAKLVESLE  453 (454)
T ss_dssp             -----------SCCHHHHHHHHHHH
T ss_pred             -----------CCcCCHHHHHHHHh
Confidence                       79999999999886

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=6.7e-58  Score=456.94  Aligned_cols=364  Identities=19%  Similarity=0.257  Sum_probs=270.9

Q ss_pred             eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc----CC
Q 015421            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG   79 (407)
Q Consensus         4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g   79 (407)
                      .||.++.++++.|.+.  +++..++|++++..++.. .+.++|+||||||||||++||+++|+..|...++.|+    +|
T Consensus        64 ~vv~~~~~~~~~p~i~--v~~~~~~l~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~t~g~~n~~ig  140 (452)
T 1gg4_A           64 ALLVSRPLDIDLPQLI--VKDTRLAFGELAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIG  140 (452)
T ss_dssp             EEEESSCCSCSSCEEE--ESCHHHHHHHHHHHHHHH-SCCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTH
T ss_pred             EEEECCCcCCCCCEEE--ECCHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeeccccccCCcc
Confidence            4566665554445332  344455666676665542 3689999999999999999999999999976677777    45


Q ss_pred             ccchhhhhhcccCCCCCCCCcEEEEEec-cccccc--CCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCC
Q 015421           80 NPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQMEI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT  156 (407)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~g-~~~l~~--~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~  156 (407)
                      .|++...        ...+++++|+|+| ++.++.  ....++|+++|||||++||+++|||+|+|+++|++|++.++++
T Consensus       141 ~p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~  212 (452)
T 1gg4_A          141 VPMTLLR--------LTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN  212 (452)
T ss_dssp             HHHHHTT--------CCTTCSEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTT
T ss_pred             hhHHHHc--------CCCCCcEEEEEeCCCCcchHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccC
Confidence            5544322        1456899999999 455542  2223799999999999999999999999999999999988888


Q ss_pred             ceEEEeCCChhhHHHH--hccccceEEeecCC---Cccccc---ccccceeEeccCCeeeeeeecccCCCChhHHHHHHH
Q 015421          157 KLGLLPFGNQHLNEAI--KGHRFNLAWIGAFP---GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV  228 (407)
Q Consensus       157 ~~~v~n~dd~~~~~~~--~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~  228 (407)
                      +.+|+|.|||....+.  .. ..++++|+...   ++....   ......|.+...+...   .+.++++|.||++|+++
T Consensus       213 ~~~V~n~dd~~~~~~~~~~~-~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~---~~~l~l~G~hn~~Nala  288 (452)
T 1gg4_A          213 GIAIMNADNNDWLNWQSVIG-SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSV---DVLLPLPGRHNIANALA  288 (452)
T ss_dssp             CEEEEETTBCCHHHHHHHHT-TSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEE---EEEECSSSTHHHHHHHH
T ss_pred             CEEEEeCCcHHHHHHHHhhc-CCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCEE---EEEeCCCcHHHHHHHHH
Confidence            9999999999887763  22 45778888642   222110   0111123322211111   34789999999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEECCCCCCC
Q 015421          229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVL  306 (407)
Q Consensus       229 A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~g~~~~~~  306 (407)
                      |+  +++..+|++++.|.++|++|+++|||||++. ..+++.+|||+|||||+|++++++.+.  .+|+++|+|+|.+.|
T Consensus       289 A~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~vidDsyahnp~s~~~~l~~l~~~~~~~i~V~G~~~e~g  365 (452)
T 1gg4_A          289 AA--ALSMSVGATLDAIKAGLANLKAVPGRLFPIQ-LAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELG  365 (452)
T ss_dssp             HH--HHHHHTTCCHHHHHHHHTTCCCCTTSSEEEE-EETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCCCT
T ss_pred             HH--HHHHHcCCCHHHHHHHHHhCCCCCCCceEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHhccCCEEEEECCccccC
Confidence            99  8999999999999999999999999999996 356789999999999999999998874  268899999998888


Q ss_pred             CCCCCcchHhhhhhcc--CccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCC--CCEEEEcCCCCCc
Q 015421          307 NGQESNGFEKLIEPLN--HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN--GDAIVLSPGCASF  382 (407)
Q Consensus       307 ~~~~~~~~~~~~~~l~--~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~--gd~vL~~~G~~s~  382 (407)
                      +++.+ .++++++.+.  ..|.++++|+.+..+.+.+.. +     .+++|+++|++.+.+.+++  ||+||++ |    
T Consensus       366 ~~~~~-~~~~~~~~~~~~~~d~vi~~g~~~~~i~~~~~~-~-----~~~~~~~~ai~~a~~~~~~~~gd~VLv~-G----  433 (452)
T 1gg4_A          366 AESEA-CHVQVGEAAKAAGIDRVLSVGKQSHAISTASGV-G-----EHFADKTALITRLKLLIAEQQVITILVK-G----  433 (452)
T ss_dssp             THHHH-HHHHHHHHHHHHTCSEEEEESSSTHHHHHHTTS-C-----EEESSHHHHHHHHHHHHHHCSSEEEEEE-C----
T ss_pred             ChhHH-HHHHHHHHHHHcCCCEEEEECcCHHHHHHHhhc-C-----ceeCCHHHHHHHHHHhhcccCCcEEEEE-c----
Confidence            76533 5667887665  378999999998887775531 1     2568999999999999899  9999997 5    


Q ss_pred             ccccChhhhhHHHHHHHhhhcc
Q 015421          383 DEFRNFEHRGMVFQELAFFSKH  404 (407)
Q Consensus       383 ~~~~~~~~r~~~~~~~~~~l~~  404 (407)
                             ||++.||++++.|.+
T Consensus       434 -------S~~~~~e~i~~~l~~  448 (452)
T 1gg4_A          434 -------SRSAAMEEVVRALQE  448 (452)
T ss_dssp             -------CGGGTTHHHHHHHC-
T ss_pred             -------CCcCCHHHHHHHHHH
Confidence                   799999999999864

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=100.00  E-value=1.2e-55  Score=443.59  Aligned_cols=363  Identities=17%  Similarity=0.204  Sum_probs=279.6

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCc-e-eecccCCc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-A-FVGGNLGN   80 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~-~-~~~g~~g~   80 (407)
                      .+||++++++++||++++|++.++|++++++.++++. ++.++|+||||||||||++||+++|+++|++ + .++|+++.
T Consensus        79 ~~vv~s~~i~~~~~~~~~a~~~~i~vl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~  157 (475)
T 1p3d_A           79 SVVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS  157 (475)
T ss_dssp             SEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred             CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCcccc
Confidence            3689999999999999999999999999999998877 4579999999999999999999999999986 4 36676653


Q ss_pred             cchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccC-CCHHHHHHHHHHhhcccCCCceE
Q 015421           81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG  159 (407)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~-~t~e~i~~~K~~i~~~~~~~~~~  159 (407)
                      +....         ...+.+++|+|+|+.+.  ....++|+++|||||++||+|+| +|+|+|+++|.+++..+++++.+
T Consensus       158 ~~~~~---------~~~~~d~~VlE~~~~~~--~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~  226 (475)
T 1p3d_A          158 AGKNA---------HLGASRYLIAEADESDA--SFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA  226 (475)
T ss_dssp             TTEEE---------ECCSSSEEEEECCCTTS--GGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred             ccccc---------ccCCCCEEEEEecCCcC--ccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEE
Confidence            22111         02356889999995433  33447899999999999999999 89999999999999988888999


Q ss_pred             EEeCCChhhHHHHhccccceEEeecCCCccccc-----ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHH
Q 015421          160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (407)
Q Consensus       160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~  234 (407)
                      |+|.|||.+..+......++++|+......+..     +.....|.+...+..  ...+.++++|.||++|+++|+  ++
T Consensus       227 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~hn~~NalaAi--a~  302 (475)
T 1p3d_A          227 VMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNE--RINVLLNVPGKHNALNATAAL--AV  302 (475)
T ss_dssp             EEETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCC--EEEEEESSCSHHHHHHHHHHH--HH
T ss_pred             EEECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCe--EEEEEEcCccHHHHHHHHHHH--HH
Confidence            999999998887765556788888643211110     111122333221111  013478999999999999999  89


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCceeEEeeec---CCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCC
Q 015421          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI---QGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLN  307 (407)
Q Consensus       235 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~---~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~  307 (407)
                      +..+|++.+.|.++|++|++++||||++....   +++.+|+| |||||+++.++++.+.    ++|+++|+|++..  .
T Consensus       303 ~~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~~~~--~  379 (475)
T 1p3d_A          303 AKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRY--S  379 (475)
T ss_dssp             HHHTTCCHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEE-CCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCH--H
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCCCCEEEecccccCCCcEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECCCCC--c
Confidence            99999999999999999999999999995311   36889999 6999999999887763    3678899986531  1


Q ss_pred             CCCCcchHhhhhhccCccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEc
Q 015421          308 GQESNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS  376 (407)
Q Consensus       308 ~~~~~~~~~~~~~l~~~~~v~~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~  376 (407)
                      .. +..+.++++.+...|.++++           |..++.+.+.+...+. ..+.+++++++|++.+.+.+++||+||++
T Consensus       380 r~-~~~~~~~~~~~~~~d~vi~t~~~~~~e~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~ai~~a~~~a~~gd~VLv~  457 (475)
T 1p3d_A          380 RT-RDLFDDFVQVLSQVDALIMLDVYAAGEAPIVGADSKSLCRSIRNLGK-VDPILVSDTSQLGDVLDQIIQDGDLILAQ  457 (475)
T ss_dssp             HH-HHTHHHHHHHHTTSSEEEEECCBCTTCCCCTTCSHHHHHHHHHHHTS-CCCEEESCGGGHHHHHHHHCCTTCEEEEE
T ss_pred             cH-HHHHHHHHHHHHhCCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhhCC-CceEEECCHHHHHHHHHHhCCCCCEEEEE
Confidence            11 12456777766667888774           4566778777754321 13455689999999999999999999986


Q ss_pred             CCCCCcccccC
Q 015421          377 PGCASFDEFRN  387 (407)
Q Consensus       377 ~G~~s~~~~~~  387 (407)
                       |+|||+.+..
T Consensus       458 -G~Gs~~~v~~  467 (475)
T 1p3d_A          458 -GAGSVSKISR  467 (475)
T ss_dssp             -CSSTHHHHHH
T ss_pred             -CCCCHHHHHH
Confidence             8899887543

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=100.00  E-value=4.7e-55  Score=440.79  Aligned_cols=362  Identities=15%  Similarity=0.203  Sum_probs=274.1

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCc-e-eecccCCc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-A-FVGGNLGN   80 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~-~-~~~g~~g~   80 (407)
                      -+||++++++++||++++|++.++|++++++.++++. ++.++|+||||||||||++||+++|+++|++ + .++|+++.
T Consensus        80 ~~vv~s~~i~~~~p~~~~a~~~~ipvl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~  158 (491)
T 2f00_A           80 SVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELM-RFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKA  158 (491)
T ss_dssp             SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred             CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCeecc
Confidence            3689999999999999999999999999999999887 4579999999999999999999999999986 4 36676653


Q ss_pred             cchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccC-CCHHHHHHHHHHhhcccCCCceE
Q 015421           81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG  159 (407)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~-~t~e~i~~~K~~i~~~~~~~~~~  159 (407)
                      +.....         ..+.+++|+|+|+.+.  ....++|+++|||||++||+++| +|+|+|+++|.++++.+++++.+
T Consensus       159 ~~~~~~---------~~~~d~~VlE~~~~~~--~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~  227 (491)
T 2f00_A          159 AGVHAR---------LGHGRYLIAEADESDA--SFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA  227 (491)
T ss_dssp             TTEEEE---------CCSSSEEEEECCCTTS--GGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred             cccccc---------CCCCCEEEEEeCCCcc--chhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEE
Confidence            221110         2356889999995432  33347899999999999999999 89999999999999988888999


Q ss_pred             EEeCCChhhHHHHhccccceEEeecCCCccccc-----ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHH
Q 015421          160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (407)
Q Consensus       160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~  234 (407)
                      |+|.|||.+..+......++++|+......+..     +.....|.+...+..  ...+.++++|.||++|+++|+  ++
T Consensus       228 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~NalaAi--a~  303 (491)
T 2f00_A          228 VMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKE--PMRVTLNAPGRHNALNAAAAV--AV  303 (491)
T ss_dssp             EEETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSC--CEEEEESSCSHHHHHHHHHHH--HH
T ss_pred             EEECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCce--EEEEEEccchHHHHHHHHHHH--HH
Confidence            999999998888766566788888643211110     111112333211111  013468999999999999999  88


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCceeEEeeec-------CC-EEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCC
Q 015421          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI-------QG-VTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQ  302 (407)
Q Consensus       235 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~-------~~-~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~  302 (407)
                      +..+|++.+.|.++|++|++++||||++....       ++ +.+|+| |||||+++.++++.+.    ++|+++|+|++
T Consensus       304 a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~~  382 (491)
T 2f00_A          304 ATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDD-YGHHPTEVDATIKAARAGWPDKNLVMLFQPH  382 (491)
T ss_dssp             HHHHTCCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEE-CCCSHHHHHHHHHHHHTTCCSSEEEEEECCB
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence            99999999999999999999999999995311       36 899999 6999999999887763    35788888865


Q ss_pred             CCCCCCCCCcchHhhhhhccCccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCC
Q 015421          303 AKVLNGQESNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD  371 (407)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd  371 (407)
                      ..  ... +..+.++++.+...|.++++           |..++.+.+.+...+. ..+.+++++++|++.+.+.+++||
T Consensus       383 ~~--~r~-k~~~~~~~~~~~~~d~vilt~~~~~~e~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~ai~~a~~~a~~gd  458 (491)
T 2f00_A          383 RF--TRT-RDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGK-IDPILVPDPARVAEMLAPVLTGND  458 (491)
T ss_dssp             CH--HHH-TTTHHHHHHHHTTSSEEEECCCBCSSSCCCTTSSHHHHTTC--------CCEECCCSSCCHHHHGGGCCSEE
T ss_pred             CC--cch-HHHHHHHHHHHHhCCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhhCC-CceEEeCCHHHHHHHHHHhCCCCC
Confidence            32  111 12466777776667888874           3444566554433221 124556899999999999999999


Q ss_pred             EEEEcCCCCCccccc
Q 015421          372 AIVLSPGCASFDEFR  386 (407)
Q Consensus       372 ~vL~~~G~~s~~~~~  386 (407)
                      +||++ |++||+.+.
T Consensus       459 ~VLv~-gaGsl~~v~  472 (491)
T 2f00_A          459 LILVQ-GAGNIGKIA  472 (491)
T ss_dssp             EEEEE-CSTTHHHHH
T ss_pred             EEEEE-CCCCHHHHH
Confidence            99986 778877544

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=1.1e-52  Score=420.70  Aligned_cols=346  Identities=18%  Similarity=0.203  Sum_probs=258.5

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCC--CCcEEEEecCCChHhHHHHHHHHHHhcCCce--eecccC
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNL   78 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~--~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~--~~~g~~   78 (407)
                      -+||+||+++++||++++|++.++|+++++++++++. +  +.++|+||||||||||++||+++|+++|+++  +++|++
T Consensus        73 d~vV~spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~  151 (469)
T 1j6u_A           73 DLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTL-KREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIM  151 (469)
T ss_dssp             SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCC
T ss_pred             CEEEECCCcCCCCHHHHHHHHcCCcEEEHHHHHHHHH-hccCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCee
Confidence            3699999999999999999999999999999999877 4  5789999999999999999999999999874  577775


Q ss_pred             Cccc-hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCC-HHHHHHHHHHhhcccCCC
Q 015421           79 GNPL-SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNT  156 (407)
Q Consensus        79 g~~~-~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t-~e~i~~~K~~i~~~~~~~  156 (407)
                      ...- ....+         .+.+ +|+|+|+++.  ....++|+++|||||++||+|+||+ +|+|+++|.++++.++  
T Consensus       152 ~~~g~~~~~~---------~~~~-~V~E~~~~~~--~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~--  217 (469)
T 1j6u_A          152 DSLEHGNYEK---------GNGP-VVYELDESEE--FFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTD--  217 (469)
T ss_dssp             TTSTTSSEEC---------CSSC-EEEEECTTSG--GGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCS--
T ss_pred             cccCcccccc---------CCCC-EEEECCCccC--ccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCC--
Confidence            4422 11111         2345 9999998743  3345799999999999999999997 9999999999988653  


Q ss_pred             ceEEEeCCChhhHHHHhccccceEEeecCC-Cccc--cccccc-ceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHH
Q 015421          157 KLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKI--DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS  232 (407)
Q Consensus       157 ~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~  232 (407)
                       .+|+|.|||.+..+      ++++|+... ++..  ...... ..|.+...+..  +..+.++++|.||++|+++|+  
T Consensus       218 -~~V~n~dd~~~~~~------~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~hn~~NalaAi--  286 (469)
T 1j6u_A          218 -LVVTFAEDELTSHL------GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKR--YLELKLKVPGFHNVLNALAVI--  286 (469)
T ss_dssp             -EEEEETTCTTTGGG------CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEE--EEEEEESSCSHHHHHHHHHHH--
T ss_pred             -EEEEECCChhhccc------eEEEEECCCceEEEEEEECCCCCEEEEEEECCeE--EEEEEecCcCHHHHHHHHHHH--
Confidence             89999999876432      566776432 1111  001011 12222212211  123578999999999999999  


Q ss_pred             HHHHHcCCCHHHHHHHhhcCCCCCCceeEE--eeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCC-CC
Q 015421          233 VLGLDIGVDVEALNSTIEILRTPPHRMQIV--HRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQA-KV  305 (407)
Q Consensus       233 a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~--~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~-~~  305 (407)
                      +++..+|++.+.|.++|++|++++||||++  . ..+++.+||| |||||+++.++++.+.    ++|+++|+|+.. .+
T Consensus       287 a~a~~lgi~~~~i~~~L~~f~g~~gR~e~v~~~-~~~g~~vi~D-~aHnp~~~~a~l~al~~~~~~~~i~~I~g~g~~~r  364 (469)
T 1j6u_A          287 ALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHD-PETNIYVIDD-YAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSR  364 (469)
T ss_dssp             HHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEE-TTTTEEEEEE-CCCSHHHHHHHHHHHHHHCSSSEEEEEECCBC---
T ss_pred             HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEccc-ccCCcEEEEe-CCCCHHHHHHHHHHHHHhcCCCcEEEEEcCCCCCc
Confidence            899999999999999999999999999998  4 3567899999 5999999999877663    367888887422 12


Q ss_pred             CCCCCCcchHhhhhhccCccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEE
Q 015421          306 LNGQESNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV  374 (407)
Q Consensus       306 ~~~~~~~~~~~~~~~l~~~~~v~~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL  374 (407)
                      +.    ..+.++...+...|.++++           |..++.+.+.++..+  ..+..+++++++++.+  .+++||+||
T Consensus       365 ~~----~~~~~l~~~~~~~d~vil~~~~~~~e~p~~g~~~~~l~~~~~~~~--~~~~~~~~~~~a~~~~--~a~~gD~VL  436 (469)
T 1j6u_A          365 LE----REDGNFAKALQLADEVVVTEVYDAFEEKKNGISGKMIWDSLKSLG--KEAYFVEKLPELEKVI--SVSENTVFL  436 (469)
T ss_dssp             ---------CHHHHHHTTSSEEEECCCBC---------CHHHHHHHHHHTT--CCEEECCSGGGHHHHC--CCCSSEEEE
T ss_pred             cH----HHHHHHHHHHhcCCEEEEcccCCCCCCcccCcCHHHHHHHHHhcC--CcEEEECCHHHHHHHh--hCCCCCEEE
Confidence            11    1345566665557888886           445677777776543  2345667899998876  788999999


Q ss_pred             EcCCCCCcccc
Q 015421          375 LSPGCASFDEF  385 (407)
Q Consensus       375 ~~~G~~s~~~~  385 (407)
                      ++ |++||+.+
T Consensus       437 v~-g~Gs~~~~  446 (469)
T 1j6u_A          437 FV-GAGDIIYS  446 (469)
T ss_dssp             EE-CSSTHHHH
T ss_pred             EE-CCCchhHH
Confidence            86 77887764

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=4.8e-52  Score=419.55  Aligned_cols=350  Identities=19%  Similarity=0.149  Sum_probs=251.5

Q ss_pred             CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhc-ccCCC-----------CCCCCcEEEEEecc
Q 015421           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALPS-----------SKPKFQVAVVEVSS  108 (407)
Q Consensus        41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~~-----------~~~~~~~~V~E~g~  108 (407)
                      .+.++|+||||||||||++||+++|+..|+++++.|+.+.++....+.. .+++.           ...+++++|+|+|+
T Consensus       106 ~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs  185 (498)
T 1e8c_A          106 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSS  185 (498)
T ss_dssp             GSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             ccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeeecCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            3578999999999999999999999999999887777665544322210 11110           14567899999997


Q ss_pred             cccc--cCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhcccc---ceEEee
Q 015421          109 YQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF---NLAWIG  183 (407)
Q Consensus       109 ~~l~--~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~---~~~~~~  183 (407)
                      +.++  .+.. ++|+++|||||+.||+++|||+|+|+++|++|++. ++++.+|+|.|||....+......   ++++|+
T Consensus       186 ~~l~~~rl~~-~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~-~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g  263 (498)
T 1e8c_A          186 HGLVQHRVAA-LKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH  263 (498)
T ss_dssp             HHHHTTTTTT-CBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSC
T ss_pred             chhhcccccc-cCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEe
Confidence            6654  3333 68999999999999999999999999999999987 567899999999998887654433   566666


Q ss_pred             cCCCc---cccc-----ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 015421          184 AFPGV---KIDT-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP  255 (407)
Q Consensus       184 ~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~  255 (407)
                      .....   .+..     ......|.+...+...   .+.++++|.||++|+++|+  +++..+|++++.|.++|++|+++
T Consensus       264 ~~~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~~~~lGi~~~~i~~~L~~~~~~  338 (498)
T 1e8c_A          264 INPNCHGRWLKATEVNYHDSGATIRFSSSWGDG---EIESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQPV  338 (498)
T ss_dssp             CCTTTCSEEEEEEEEEECSSCEEEEEEETTCCE---EEEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCCC
T ss_pred             cCCCCCcCCEEEEEEEEcCCceEEEEEECCceE---EEEecCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCC
Confidence            43211   1110     0011122222111111   2468999999999999999  88999999999999999999999


Q ss_pred             CCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHh-hhhhcc-CccEEEEe
Q 015421          256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEK-LIEPLN-HHRCVITF  330 (407)
Q Consensus       256 ~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~-~~~~l~-~~~~v~~~  330 (407)
                      +||||++. ..+++.+|+| |||||+|++++++.+.   ++|+++|||+..+++.     .+++ +++... ..|.++++
T Consensus       339 ~gR~e~v~-~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~r~i~V~G~g~dr~~-----~~~~~~~~~~~~~~d~vi~~  411 (498)
T 1e8c_A          339 CGRMEVFT-APGKPTVVVD-YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK-----GKRPLMGAIAEEFADVAVVT  411 (498)
T ss_dssp             TTSSEEEC-CTTSCEEEEE-CCCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSCS-----THHHHHHHHHHHHCSEEEEC
T ss_pred             CCceEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCCEEEEECCCCCcch-----hHHHHHHHHHHhCCCEEEEc
Confidence            99999995 2457788999 6999999999988774   4689999997655432     1332 333322 26888887


Q ss_pred             CCC-----hHHHHHHHHhCCCCc--cccccccHHHHHHHHHHhcCCCCEEEEc-CCCCCcccccC---hhhhhHHHHHHH
Q 015421          331 GYS-----GVLIWKTLVNNGLSI--PCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN---FEHRGMVFQELA  399 (407)
Q Consensus       331 g~~-----~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~a~~~~~~gd~vL~~-~G~~s~~~~~~---~~~r~~~~~~~~  399 (407)
                      +..     +..+.+.+.. +...  .+.+++|+++|++.+.+.+++||+||++ +|+.+++.+++   .++.-..-++++
T Consensus       412 ~~~~r~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~ai~~a~~~a~~gd~VLv~GkG~~~~q~~~~~~~~f~d~~~~~~~l  490 (498)
T 1e8c_A          412 DDNPRTEEPRAIINDILA-GMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLL  490 (498)
T ss_dssp             CSCCBTSCHHHHHHHHHT-TSSCGGGSEECSCHHHHHHHHHHHSCTTCEEEEESCTTCCEEEETTEEEECCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHh-hccccCceEEECCHHHHHHHHHHhCCCCCEEEEecCCCcceEEECCEEecCChHHHHHHHH
Confidence            543     4666666543 2211  3456789999999999999999999986 67777787754   123333344455


Q ss_pred             hhhccc
Q 015421          400 FFSKHD  405 (407)
Q Consensus       400 ~~l~~~  405 (407)
                      +.+...
T Consensus       491 ~~~~~~  496 (498)
T 1e8c_A          491 GVIARS  496 (498)
T ss_dssp             TSCCSC
T ss_pred             HhhccC
Confidence            555443

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*

Probab=100.00  E-value=3.7e-51  Score=415.79  Aligned_cols=349  Identities=19%  Similarity=0.200  Sum_probs=249.2

Q ss_pred             CCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhcc-cCC-----------CCCCCCcEEEEEeccc
Q 015421           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI-ALP-----------SSKPKFQVAVVEVSSY  109 (407)
Q Consensus        42 ~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~-~~~-----------~~~~~~~~~V~E~g~~  109 (407)
                      ++++|+||||||||||++||+++|+..|+++++.|+.+..+....+... +++           ..+.+++++|+|+|++
T Consensus       145 ~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~  224 (535)
T 2wtz_A          145 RLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSH  224 (535)
T ss_dssp             SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             cceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence            5789999999999999999999999999999887876655443221110 111           0135789999999976


Q ss_pred             ccc--cCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccC--CCceEEEeCCChhhHHHHhccccceEEeecC
Q 015421          110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF  185 (407)
Q Consensus       110 ~l~--~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~--~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~  185 (407)
                      .++  .+.. ++|+++|||||+.||+++|||+|+|+++|++|++.++  +++.+|+|.|||....+..... ++++|+..
T Consensus       225 ~l~~~rl~~-~~p~vaViTNI~~DHld~~gs~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~~-~v~~~g~~  302 (535)
T 2wtz_A          225 ALALGRVDG-TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA-DAITVSAA  302 (535)
T ss_dssp             HHHTTTTTT-CCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHHS-SCEEEESS
T ss_pred             ccccccccc-CCcCEEEEcCCChHHhhhcCCHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhcC-CEEEEecC
Confidence            553  3333 6899999999999999999999999999999999764  5689999999998877765433 67888864


Q ss_pred             CC---cccc---cc-cccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCc
Q 015421          186 PG---VKID---TE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR  258 (407)
Q Consensus       186 ~~---~~~~---~~-~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR  258 (407)
                      ..   +...   .. .....|.+...+..  ...+.++++|.||++|+++|+  +++..+|++.+.|.++|++|+ ++||
T Consensus       303 ~~~~d~~~~~i~~~~~~g~~f~~~~~~~~--~~~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~~~-~~gR  377 (535)
T 2wtz_A          303 DRPAHWRATDVAPTDAGGQQFTAIDPAGV--GHHIGIRLPGRYNVANCLVAL--AILDTVGVSPEQAVPGLREIR-VPGR  377 (535)
T ss_dssp             SSCCSEEEEEEEEETTTEEEEEEECTTSC--EEEEEESCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCC-CTTS
T ss_pred             CCcCcEEEEEEEEcCCCCeEEEEEeCCce--EEEEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCC-CCCc
Confidence            32   2111   00 11122333221111  012478999999999999999  889999999999999999999 9999


Q ss_pred             eeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEECCCCCCCCCCCCcchHhhhhhcc-CccEEEEeCCCh-
Q 015421          259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITFGYSG-  334 (407)
Q Consensus       259 ~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~-~~~~v~~~g~~~-  334 (407)
                      ||++. ..++..+|+| |||||+|++++++.+.  ++|+++|||++.+++..    .+..+++... ..|.+++++..+ 
T Consensus       378 ~e~v~-~~~~~~viiD-yahNP~s~~aal~~l~~~~~r~i~V~G~~gdr~~~----~~~~~~~~a~~~~d~vi~~~~~~r  451 (535)
T 2wtz_A          378 LEQID-RGQGFLALVD-YAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPG----KRAPMGRIAAQLADLVVVTDDNPR  451 (535)
T ss_dssp             SEECC-SSCSSEEEEE-CCCSHHHHHHHHHTTCCSSSCEEEEECCCTTSCGG----GHHHHHHHHHHHCSEEEECCSCCT
T ss_pred             eEEEE-cCCCcEEEEE-CCCCHHHHHHHHHHhhCCCCcEEEEECCCCccchh----hHHHHHHHHHhcCCEEEEcCCCCC
Confidence            99995 2447767778 7999999999999885  46899999988665321    2223333332 268888886543 


Q ss_pred             ----HHHHHHHHhC-C-CC--ccccccccHHHHHHHHHHhcCCCCEEEEc-CCCCCcccccC---hhhhhHHHHHHHhhh
Q 015421          335 ----VLIWKTLVNN-G-LS--IPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN---FEHRGMVFQELAFFS  402 (407)
Q Consensus       335 ----~~~~~~l~~~-~-~~--~~~~~~~~~~~a~~~a~~~~~~gd~vL~~-~G~~s~~~~~~---~~~r~~~~~~~~~~l  402 (407)
                          ..+.+.+... . ..  ..+..++|+++|++.+.+.+++||+||++ +|+..++.++.   .++.-..-+++++.+
T Consensus       452 ~e~~~~i~~~i~~g~~~~~~~~~~~~~~d~~~Ai~~a~~~a~~gD~VLv~GsGhe~~q~~~~~~~~f~d~~~~~~~l~~~  531 (535)
T 2wtz_A          452 DEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEAL  531 (535)
T ss_dssp             TSCHHHHHHHHHHHHTTCC-CCEEEECCSHHHHHHHHHHHCCTTCEEEEESCTTCCCEECC-CEECCCTTHHHHHHHHSS
T ss_pred             CCCHHHHHHHHHhhhhhcCCCCcEEEECCHHHHHHHHHHhCCCCCEEEEEeCCCcceEEECCEeecCChHHHHHHHHHhh
Confidence                5555544221 0 00  13456789999999999999999999997 56666666654   223334444555544


Q ss_pred             c
Q 015421          403 K  403 (407)
Q Consensus       403 ~  403 (407)
                      +
T Consensus       532 ~  532 (535)
T 2wtz_A          532 E  532 (535)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*

Probab=100.00  E-value=2.8e-47  Score=378.23  Aligned_cols=329  Identities=18%  Similarity=0.163  Sum_probs=233.6

Q ss_pred             eeeHHHHHHhhC---CCCCcEEEEecCCChHhHHHHHHHHHHhcCCcee--ecccC----------Cccchhhhhhc---
Q 015421           28 VMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNL----------GNPLSEAAFHC---   89 (407)
Q Consensus        28 ~l~~~~~~~~~~---~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~--~~g~~----------g~~~~~~~~~~---   89 (407)
                      -|.|+..+.+.+   +++.++|+||||||||||++||+++|+++|++++  +++++          |.+++...+..   
T Consensus        34 gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~  113 (437)
T 3nrs_A           34 GLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFA  113 (437)
T ss_dssp             CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHH
Confidence            366777666554   3578999999999999999999999999999984  34332          33333221100   


Q ss_pred             --------c-cC-----------CCCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHHHH
Q 015421           90 --------I-AL-----------PSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC  147 (407)
Q Consensus        90 --------~-~~-----------~~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~K~  147 (407)
                              . .+           .+.+.++|++|+|+| +|++|.++. ++|+++|||||+.||+++|| |+|+|+++|+
T Consensus       114 ~v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggrld~tni-i~p~vaVITnI~~DHld~lG~t~e~ia~~Ka  192 (437)
T 3nrs_A          114 QIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDATNI-VDSDVAAITSIALDHTDWLGYDRESIGREKA  192 (437)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCCCBCCCTTCSHHHHHHHHG
T ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccc-cCCCEEEEcCccHHHHHHhCCcHHHHHHHHH
Confidence                    0 00           011457899999999 688998776 79999999999999999999 9999999999


Q ss_pred             HhhcccCCCceEEEeCCChh--hHHHHhccccceEEeecCCCcccc--------cccccceeEeccCCeeeeeeecccCC
Q 015421          148 HLFSHMVNTKLGLLPFGNQH--LNEAIKGHRFNLAWIGAFPGVKID--------TEAKTASFEVPAVGVVSQLQLHNMKV  217 (407)
Q Consensus       148 ~i~~~~~~~~~~v~n~dd~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (407)
                      +|++   +++.+|+|.||+.  +.+.+...+.++++++.+..+...        .......+.+...+.  .  ...+++
T Consensus       193 ~I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~l  265 (437)
T 3nrs_A          193 GVFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGER--Q--LTGLPV  265 (437)
T ss_dssp             GGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTTEEEEC--------------CCEEEEETTE--E--EEEECC
T ss_pred             hhcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEecccceeeecccccccccccccCceEEEecCCc--c--eeccCC
Confidence            9998   5789999988764  444455556677777754211111        000011222221111  1  123455


Q ss_pred             C--ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----
Q 015421          218 M--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----  291 (407)
Q Consensus       218 ~--G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----  291 (407)
                      +  |.||+.|+++|+  ++ ..+|++.+.|.++|++|+ ||||||++.  .++ .+|+| |||||+|++++++.+.    
T Consensus       266 ~~~~~~Na~~Alaa~--~~-~~lgi~~~~i~~gL~~~~-~pGR~e~v~--~~~-~vi~D-~AHNp~a~~all~~l~~~~~  337 (437)
T 3nrs_A          266 PNVPLANAATALAVL--HY-SELPLSDEAIRQGLQAAS-LPGRFQVVS--EQP-LLILD-VAHNPHAARYLVNRLAQVIN  337 (437)
T ss_dssp             CSSCHHHHHHHHHHH--HH-HTCCCCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEEC-CCCSHHHHHHHHHHHHHTC-
T ss_pred             cchhHHHHHHHHHHH--HH-hCCCCCHHHHHHHHHhCC-CCCceEEEe--cCC-eEEEE-CCCCHHHHHHHHHHHHhhcc
Confidence            5  888888888877  44 568999999999999999 999999994  344 57777 5999999999887664    


Q ss_pred             ------CCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEEeCCC------hHHHHHHHHhCCCCccccccccHHH
Q 015421          292 ------GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYS------GVLIWKTLVNNGLSIPCFAVANMKD  358 (407)
Q Consensus       292 ------~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~g~~------~~~~~~~l~~~~~~~~~~~~~~~~~  358 (407)
                            ++|+++|+|++.++       .++++++.+.. .+.+++++.+      ++.+.+.+..     . ..++|+++
T Consensus       338 ~~~~~~~~r~i~V~G~~~dk-------d~~~~~~~l~~~~~~v~~~~~~~~r~~~~~~l~~~~~~-----~-~~~~d~~~  404 (437)
T 3nrs_A          338 PVNASKQGKVRAVVGMLSDK-------DIAGTLACLSERVDEWYCAPLEGPRGASAGQLAEHLVS-----A-RQFSDVET  404 (437)
T ss_dssp             -------CCEEEEECCBTTB-------CHHHHHHHHTTTCCEEEECCCSSTTBCCHHHHHTTCSS-----C-EECSSHHH
T ss_pred             hhhhcCCCCEEEEEeCCCCC-------CHHHHHHHHHhcCCEEEEeCCCCCCCCCHHHHHHHHhh-----C-CCcCCHHH
Confidence                  46899999987654       25667776654 6778887654      2344433221     1 46789999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCCcccccCh
Q 015421          359 AVNHARRMATNGDAIVLSPGCASFDEFRNF  388 (407)
Q Consensus       359 a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~  388 (407)
                      |++.+.+.+++||+||++   |||+.+..+
T Consensus       405 Ai~~a~~~a~~~D~VLv~---GS~~~v~~~  431 (437)
T 3nrs_A          405 AWRQAMQDADTQDVVIVC---GSFHTVAHV  431 (437)
T ss_dssp             HHHHHHHHCCTTCEEEEE---SSHHHHHHH
T ss_pred             HHHHHHHhcCCCCeEEEE---ehHHHHHHH
Confidence            999999999999999996   577665544

>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A

Probab=100.00  E-value=1e-47  Score=381.22  Aligned_cols=330  Identities=14%  Similarity=0.104  Sum_probs=229.0

Q ss_pred             eeeHHHHHHhhC---CCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc------------CCccchhhhhh----
Q 015421           28 VMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH----   88 (407)
Q Consensus        28 ~l~~~~~~~~~~---~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~----   88 (407)
                      .+.++..+.+.+   +++.++|+||||||||||++||+++|+..|++++..++            .|.+++...+.    
T Consensus        21 ~l~~~~~~l~~lg~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~  100 (428)
T 1jbw_A           21 DHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVA  100 (428)
T ss_dssp             SCHHHHHHHHHTTCGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCchhcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHH
Confidence            345555444333   24678999999999999999999999999999864332            23333221110    


Q ss_pred             ---------------c-ccCC----------CCCCCCcEEEEEecc-cccccCCccccceEEEEecCChhhhccCC-CHH
Q 015421           89 ---------------C-IALP----------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMK  140 (407)
Q Consensus        89 ---------------~-~~~~----------~~~~~~~~~V~E~g~-~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e  140 (407)
                                     . .+..          +.+.++|++|+|+|+ |++|.++. ++|+++|||||+.||+++|| |+|
T Consensus       101 ~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~p~vaviTnI~~DHld~~g~t~e  179 (428)
T 1jbw_A          101 FVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNV-ITPVVSVLTEVALDHQKLLGHTIT  179 (428)
T ss_dssp             HHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-CCCSEEEECCCCSCCHHHHCSSHH
T ss_pred             HHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCcccccccc-CCCCEEEECcCcHhhhhhhCCCHH
Confidence                           0 0000          014578999999995 58888776 79999999999999999999 999


Q ss_pred             HHHHHHHHhhcccCCCceEEEeCCChhhHHHHhc----cccceEEeecCCCcccccc---cccceeEeccCCeeeeeeec
Q 015421          141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTE---AKTASFEVPAVGVVSQLQLH  213 (407)
Q Consensus       141 ~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  213 (407)
                      +|+++|+++++   +++.+|+|.||+.+..+...    .+.++++|+.+  +.....   .....|.+...+..  +..+
T Consensus       180 ~ia~~K~~i~~---~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~  252 (428)
T 1jbw_A          180 AIAKHKAGIIK---RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRD--FSVPKAKLHGWGQRFTYEDQDGR--ISDL  252 (428)
T ss_dssp             HHHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--EEEEEEEECSSSEEEEEEETTEE--EEEE
T ss_pred             HHHHHHhcccc---CCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCcc--ceeeccccccCCceEEEecCCcc--cccc
Confidence            99999999997   57899999999977665432    24467777642  211100   01112333222111  1134


Q ss_pred             ccCCCChhHHHHHHHHHHHHHHHHc-C-----CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHH
Q 015421          214 NMKVMGRHNYHNAAVAALSVLGLDI-G-----VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL  287 (407)
Q Consensus       214 ~l~~~G~~~~~Nal~A~~~a~~~~l-g-----i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al  287 (407)
                      .++++|.||++|+++|+  +++..+ |     ++.+.|.++|++|+ +|||||++.  .++..+||  ++|||+|+++++
T Consensus       253 ~l~l~G~hn~~Na~aAi--a~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~~~viiD--~AhNp~s~~a~l  325 (428)
T 1jbw_A          253 EVPLVGDYQQRNMAIAI--QTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKIS--DTPLIVID--GAHNPDGINGLI  325 (428)
T ss_dssp             EESCCSTHHHHHHHHHH--HHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEE--TTTTEEEE--CCCSHHHHHHHH
T ss_pred             ccCCCChhHHHHHHHHH--HHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEec--CCCcEEEE--CCcCHHHHHHHH
Confidence            78999999999999999  788888 8     99999999999999 999999995  35667776  478999999999


Q ss_pred             hccC---CCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEEeCC-C-hHHH-HHHHHhCCCCccccccccHHHHH
Q 015421          288 MDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGY-S-GVLI-WKTLVNNGLSIPCFAVANMKDAV  360 (407)
Q Consensus       288 ~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~g~-~-~~~~-~~~l~~~~~~~~~~~~~~~~~a~  360 (407)
                      +.+.   ++|+++|+|++.++       .+.++++.+.+ .|.++++++ + ++.. .+.+...   ..+..++|+++|+
T Consensus       326 ~~l~~~~~~~~i~V~g~~~~k-------d~~~~~~~~~~~~d~vi~~~~~~~~r~~~~~~l~~~---~~~~~~~~~~~ai  395 (428)
T 1jbw_A          326 TALKQLFSQPITVIAGILADK-------DYAAMADRLTAAFSTVYLVPVPGTPRALPEAGYEAL---HEGRLKDSWQEAL  395 (428)
T ss_dssp             HHHHHHCSSCCEEEEECSSST-------THHHHHHHHHHHCSEEEECCCSCC------------------CBCSSHHHHH
T ss_pred             HHHHHhcCCCEEEEEeeCCCC-------CHHHHHHHHhhhCCEEEEECCCCCCCCCCHHHHHhh---hCCeecCCHHHHH
Confidence            8874   36889999988543       25566665543 688888443 2 2211 1112111   1244568999999


Q ss_pred             HHHHHhcCCCCEEEEcCCCCCccccc
Q 015421          361 NHARRMATNGDAIVLSPGCASFDEFR  386 (407)
Q Consensus       361 ~~a~~~~~~gd~vL~~~G~~s~~~~~  386 (407)
                      +.+.+.+ +||+||++   ||++.+.
T Consensus       396 ~~a~~~~-~~d~vLv~---GS~~~~~  417 (428)
T 1jbw_A          396 AASLNDV-PDQPIVIT---GSLYLAS  417 (428)
T ss_dssp             HHHHHHC-TTSCEEEE---ESHHHHH
T ss_pred             HHHHhhC-CCCeEEEE---eeHHHHH
Confidence            9999888 99999996   5565554

>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*

Probab=100.00  E-value=5e-47  Score=380.73  Aligned_cols=340  Identities=17%  Similarity=0.185  Sum_probs=239.9

Q ss_pred             CceeeHHHHHHhhC---CCCCcEEEEecCCChHhHHHHHHHHHHhcCCceee--cccC----------Cccchhhhhhc-
Q 015421           26 KRVMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV--GGNL----------GNPLSEAAFHC-   89 (407)
Q Consensus        26 ~~~l~~~~~~~~~~---~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~--~g~~----------g~~~~~~~~~~-   89 (407)
                      .+.|.|++.+.+.+   +++.++|+||||||||||++||+++|+++|++++.  ++++          |.+++...+.. 
T Consensus        44 ~~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~  123 (487)
T 2vos_A           44 DPSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVAT  123 (487)
T ss_dssp             CTTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHH
Confidence            34678888877655   24678999999999999999999999999999843  2221          22222111000 


Q ss_pred             -------------------------ccC----------CCCCCCCcEEEEEecc-cccccCCccccceEEEEecCChhhh
Q 015421           90 -------------------------IAL----------PSSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHL  133 (407)
Q Consensus        90 -------------------------~~~----------~~~~~~~~~~V~E~g~-~~l~~~~~~~~p~i~viTni~~dHl  133 (407)
                                               .+.          .+.+.++|++|+|+|+ +.+|.++. ++|+++|||||+.||+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~~d~tn~-i~p~vaVITnI~~DHl  202 (487)
T 2vos_A          124 YREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATNV-INAPVAVITPISIDHV  202 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-SCCSEEEECCCCCCBC
T ss_pred             HHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccc-cCCCEEEECCcchhhh
Confidence                                     000          0014578999999996 57887765 7999999999999999


Q ss_pred             ccCC-CHHHHHHHHHHhhccc---CCCceEEEeCCChhhHHHHh----ccccceEEeecCCCccccc---ccccceeEec
Q 015421          134 ERHK-TMKNYALTKCHLFSHM---VNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDT---EAKTASFEVP  202 (407)
Q Consensus       134 ~~~~-t~e~i~~~K~~i~~~~---~~~~~~v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  202 (407)
                      ++|| |+|+|+++|++|++.+   ++++.+|+|.|||.+..+..    ....++++++.+  +....   ......|.+.
T Consensus       203 d~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~d--~~~~~~~~~~~g~~~~~~  280 (487)
T 2vos_A          203 DYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSE--FAVLRRQIAVGGQVLQLQ  280 (487)
T ss_dssp             SCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTTT--BEEEEEEEETTEEEEEEE
T ss_pred             hhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecCc--eEEEeeccccCCceEEEe
Confidence            9999 9999999999999764   57889999999997655432    224566666542  21110   0011123332


Q ss_pred             cCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHc-------CCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcC
Q 015421          203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-------GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS  275 (407)
Q Consensus       203 ~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~l-------gi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~  275 (407)
                      ..+..  +..+.++++|.||++|+++|+  +++..+       |++.+.|.++|++|+ +|||||++.  .+ ..+|+| 
T Consensus       281 ~~~~~--~~~~~l~l~G~hn~~Na~aAi--aa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~--~~-~~vi~D-  351 (487)
T 2vos_A          281 GLGGV--YSDIYLPLHGEHQAHNAVLAL--ASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMR--SA-PTVFID-  351 (487)
T ss_dssp             ETTEE--EEEEEECCCSHHHHHHHHHHH--HHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEE--TT-TEEEEC-
T ss_pred             cCCcc--cceeecCCCCHHHHHHHHHHH--HHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEc--CC-CeEEEE-
Confidence            21111  113468999999999999999  777776       799999999999999 899999994  34 466777 


Q ss_pred             CCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEEeCC------ChHHHHHHHHh-
Q 015421          276 KATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGY------SGVLIWKTLVN-  343 (407)
Q Consensus       276 ~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~g~------~~~~~~~~l~~-  343 (407)
                      ++|||+|++++++.+.    .+|+++|+|++.+++       ++.+.+.+.+ .|.+++++.      ++..+.+.++. 
T Consensus       352 ~AHNp~a~~a~l~~l~~~~~~~~~i~V~G~~~dkd-------~~~~~~~l~~~~d~vilt~~~~~r~~~~~~l~~~~~~~  424 (487)
T 2vos_A          352 AAHNPAGASALAQTLAHEFDFRFLVGVLSVLGDKD-------VDGILAALEPVFDSVVVTHNGSPRALDVEALALAAGER  424 (487)
T ss_dssp             CCCSHHHHHHHHHHHHHSCCCSEEEEEECCBTTBC-------HHHHHHHHTTTCSEEEECCCSCTTBCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCC-------HHHHHHHHHhhCCEEEEeCCCCcCCCCHHHHHHHHHhh
Confidence            5999999999988763    368899999998763       2345554443 578888753      24456655433 


Q ss_pred             CCCCccccccccHHHHHHHHHHhcCCC-------------CEEEEcCCCCCcccccCh
Q 015421          344 NGLSIPCFAVANMKDAVNHARRMATNG-------------DAIVLSPGCASFDEFRNF  388 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~a~~~a~~~~~~g-------------d~vL~~~G~~s~~~~~~~  388 (407)
                      .+. ..+..++++++|++.+.+.++++             |+||++   |||+.+..+
T Consensus       425 ~~~-~~~~~~~~~~~Ai~~a~~~a~~~~~~~~~~~~~~~~d~vlv~---GS~y~vg~~  478 (487)
T 2vos_A          425 FGP-DRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVIT---GSVVTAGAA  478 (487)
T ss_dssp             HCG-GGEEECSSHHHHHHHHHHHHHHHHTCTTTTC----CEEEEEE---SSHHHHHHH
T ss_pred             cCC-CceEecCCHHHHHHHHHHhcccCcccccccccccCCCEEEEE---eeHHHHHHH
Confidence            111 13456789999999998877665             889885   677766544

>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2

Probab=100.00  E-value=5.6e-47  Score=376.63  Aligned_cols=316  Identities=16%  Similarity=0.142  Sum_probs=223.0

Q ss_pred             CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc------------CCccchhhhhh-----------c--------
Q 015421           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH-----------C--------   89 (407)
Q Consensus        41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~-----------~--------   89 (407)
                      ++.++|+||||||||||++||+++|+..|++++..++            .|.|++...+.           .        
T Consensus        50 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (442)
T 1o5z_A           50 LEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFS  129 (442)
T ss_dssp             GSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTC
T ss_pred             hcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCC
Confidence            4678999999999999999999999999999864322            15554432110           0        


Q ss_pred             ccCC----------CCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHHHHHhhcccCCCc
Q 015421           90 IALP----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK  157 (407)
Q Consensus        90 ~~~~----------~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~K~~i~~~~~~~~  157 (407)
                      .++.          +.+.++|++|+|+| ++++|.++. ++|+++|||||+.||+++|| |+|+|+++|++|++   +++
T Consensus       130 ~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~---~~~  205 (442)
T 1o5z_A          130 PSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNV-VFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIK---ERV  205 (442)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGG-CCCSCEEECCCCC-------CCHHHHHHHHGGGCC---TTC
T ss_pred             CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccccc-CCCCEEEECCccHhhhhhhCcCHHHHHHHHHhhcc---CCc
Confidence            0000          01346889999999 688888776 89999999999999999999 99999999999998   578


Q ss_pred             eEEEeCCChhhHHHHhc----cccceEEeecCCCccccc---ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHH
Q 015421          158 LGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA  230 (407)
Q Consensus       158 ~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~  230 (407)
                      .+|+|.||+....+...    .+.++++|+.+  +....   ......+.+...+ .  +..+.++++|.||++|+++|+
T Consensus       206 ~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~l~G~hn~~NalaAi  280 (442)
T 1o5z_A          206 PLVTGERKREALKVMEDVARKKSSRMYVIDKD--FSVKVKSLKLHENRFDYCGEN-T--FEDLVLTMNGPHQIENAGVAL  280 (442)
T ss_dssp             CEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--BEEEEEECCTTCEEEEEESSS-E--EEEEEESSCSTHHHHHHHHHH
T ss_pred             cEEEcCCChHHHHHHHHHHHHcCCcEEEeCcc--eeeeccccccCCceEEEeccc-c--ccccccCCCcHhHHHHHHHHH
Confidence            99999999887665432    24567777642  21110   0011223332211 1  113568999999999999999


Q ss_pred             HHHHHH--HcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCC
Q 015421          231 LSVLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK  304 (407)
Q Consensus       231 ~~a~~~--~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~  304 (407)
                        +++.  .+|++.+.|.++|++|. +|||||++.  .++..+|.| ++|||+|++++++.+.    ++|+++|+|++.+
T Consensus       281 --a~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~--~~~~~viiD-~AhNp~s~~~~l~~l~~~~~~~~~i~V~g~~~d  354 (442)
T 1o5z_A          281 --KTLEATGLPLSEKAIREGLKNAK-NLGRFEILE--KNGKMYILD-GAHNPHGAESLVRSLKLYFNGEPLSLVIGILDD  354 (442)
T ss_dssp             --HHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEE--ETTEEEEEC-CCCSHHHHHHHHHHHHHHCTTCCEEEEECCCTT
T ss_pred             --HHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEE--cCCCeEEEE-CCcCHHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence              8888  89999999999999999 999999995  342445556 5999999999998873    3688999998765


Q ss_pred             CCCCCCCcchHhhhhhccC-ccEEEEeCCC------hHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcC
Q 015421          305 VLNGQESNGFEKLIEPLNH-HRCVITFGYS------GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP  377 (407)
Q Consensus       305 ~~~~~~~~~~~~~~~~l~~-~~~v~~~g~~------~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~  377 (407)
                      +       .+.++++.+.+ .|.++++|.+      +..+.+.++..+  ..+..++++++|++.+      ||+||++ 
T Consensus       355 k-------d~~~~~~~l~~~~d~vi~~~~~~~r~~~~~~i~~~~~~~~--~~~~~~~~~~~Ai~~a------~d~VLv~-  418 (442)
T 1o5z_A          355 K-------NREDILRKYTGIFERVIVTRVPSPRMKDMNSLVDMAKKFF--KNVEVIEDPLEAIEST------ERATVVT-  418 (442)
T ss_dssp             S-------CHHHHHGGGTTTCSEEEECCCSSTTCCCHHHHHHHHHHHC--SCCEECSSHHHHHHTC------CSEEEEE-
T ss_pred             C-------CHHHHHHHHHhhCCEEEEECCCCCCCCCHHHHHHHHHhcC--CCceecCCHHHHHHhC------CCEEEEE-
Confidence            4       25566666554 6888777632      356666665432  1345678999998876      8999984 


Q ss_pred             CCCCcccccChh
Q 015421          378 GCASFDEFRNFE  389 (407)
Q Consensus       378 G~~s~~~~~~~~  389 (407)
                        |||+.+.++.
T Consensus       419 --GS~~~~~~~~  428 (442)
T 1o5z_A          419 --GSLFLVGYVR  428 (442)
T ss_dssp             --SCHHHHHHHH
T ss_pred             --eeHHHHHHHH
Confidence              6787776653

>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*

Probab=100.00  E-value=7.1e-46  Score=367.42  Aligned_cols=310  Identities=18%  Similarity=0.145  Sum_probs=221.2

Q ss_pred             CCCcEEEEecCCChHhHHHHHHHHHHhcCCcee--ecccC----------Cccchhhhhh-----------cc--cCC--
Q 015421           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNL----------GNPLSEAAFH-----------CI--ALP--   93 (407)
Q Consensus        41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~--~~g~~----------g~~~~~~~~~-----------~~--~~~--   93 (407)
                      ++.++|+||||||||||++||+++|++.|++++  +++++          |.+++...+.           ..  +..  
T Consensus        47 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~~~~~t~~e~  126 (422)
T 1w78_A           47 PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGDISLTYFEY  126 (422)
T ss_dssp             CSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred             cCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhccCCCChHHH
Confidence            578999999999999999999999999999874  33322          2222211100           00  000  


Q ss_pred             --------CCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHHHHHhhcccCCCceEEEeC
Q 015421           94 --------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF  163 (407)
Q Consensus        94 --------~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~K~~i~~~~~~~~~~v~n~  163 (407)
                              +.+.++|++|+|+| ++++|.++. ++|+++|||||+.||+++|| |+|+|+++|+++++   +++.+|+|.
T Consensus       127 ~t~~a~~~~~~~~~d~~VlEvgl~~~~d~t~~-~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~---~~~~~v~~~  202 (422)
T 1w78_A          127 GTLSALWLFKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGREKAGIFR---SEKPAIVGE  202 (422)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC---TTSEEEECC
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCCcccccccC-CCCCEEEECCcChhhhhhhCCCHHHHHHHHHhhcc---CCCcEEEcC
Confidence                    01346789999999 678887765 79999999999999999999 99999999999997   467899988


Q ss_pred             CChh--hHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHc--C
Q 015421          164 GNQH--LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI--G  239 (407)
Q Consensus       164 dd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~l--g  239 (407)
                      ||+.  +...+...+.++++|+.+  +.+...  ...+.+...+...    ..++++ .||++|+++|+  +++..+  |
T Consensus       203 d~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~--~~~~~~~~~~~~~----~~l~l~-~hn~~Na~aAi--a~~~~~~~g  271 (422)
T 1w78_A          203 PEMPSTIADVAQEKGALLQRRGVE--WNYSVT--DHDWAFSDAHGTL----ENLPLP-LVPQPNAATAL--AALRASGLE  271 (422)
T ss_dssp             SSCCHHHHHHHHHHTCEEEEBTTT--BEEEEC--SSCEEEEETTEEE----EEECCC-SSCHHHHHHHH--HHHHHHTCC
T ss_pred             ccHHHHHHHHHHHcCCceEEeCcc--eeeecc--CceEEEecCCccc----ccCCch-HHHHHHHHHHH--HHHHHhCCC
Confidence            7764  222332334567777642  221111  1122222222111    357788 99999999999  666664  8


Q ss_pred             CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCCCcchH
Q 015421          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFE  315 (407)
Q Consensus       240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~~~~  315 (407)
                      ++.+.|.++|++|+ ++||||++.  .++ .+|+| ++|||+|++++++.+.    ++|+++|+|++.++       .++
T Consensus       272 i~~~~i~~~L~~~~-~~gR~e~~~--~~~-~~i~D-~Ahnp~s~~~~l~~l~~~~~~~~~i~V~g~~~~k-------d~~  339 (422)
T 1w78_A          272 VSENAIRDGIASAI-LPGRFQIVS--ESP-RVIFD-VAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDK-------DIA  339 (422)
T ss_dssp             CCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEEE-CCCSHHHHHHHHHHHHHSCSCSCEEEEECCBTTS-------CHH
T ss_pred             CCHHHHHHHHHhCC-CCceEEEEe--CCC-eEEEE-CCCCHHHHHHHHHHHHHhCCCCCEEEEEeccCCC-------CHH
Confidence            99999999999999 899999995  345 45556 4999999999977663    46899999987654       256


Q ss_pred             hhhhhccC-ccEEEEeCCC------hHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCccccc
Q 015421          316 KLIEPLNH-HRCVITFGYS------GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR  386 (407)
Q Consensus       316 ~~~~~l~~-~~~v~~~g~~------~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~  386 (407)
                      +++..+.+ .|.++++|.+      +..+.+.+..      +..++++++|++.+.+.+++||+||++   ||++.+.
T Consensus       340 ~~~~~l~~~~d~vi~~~~~~~r~~~~~~l~~~~~~------~~~~~~~~~ai~~a~~~~~~~d~vLv~---GS~~~~~  408 (422)
T 1w78_A          340 GTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGN------GKSFDSVAQAWDAAMADAKAEDTVLVC---GSFHTVA  408 (422)
T ss_dssp             HHHHHHHTTCSEEEECCCCSSSBCCHHHHHHHHSS------CEECSSHHHHHHHHHHHCCTTCEEEEE---SSHHHHH
T ss_pred             HHHHHHHhhCCEEEEECCCCCCCCCHHHHHHHHhh------cccCCCHHHHHHHHHHhcCCCCEEEEE---eeHHHHH
Confidence            67766643 6888888743      3445554421      345689999999999999999999996   4555443

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=100.00  E-value=2.3e-44  Score=344.38  Aligned_cols=246  Identities=17%  Similarity=0.195  Sum_probs=191.5

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCcee-e----ccc
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-V----GGN   77 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~-~----~g~   77 (407)
                      -+||+||+++++||++++|+++|+|++++++++++.+.++.++|+||||||||||++|++++|+..|.++. .    .+|
T Consensus        68 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n  147 (326)
T 3eag_A           68 DVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPEN  147 (326)
T ss_dssp             SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETT
T ss_pred             CEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceecc
Confidence            47999999999999999999999999999999987532567899999999999999999999999998752 2    266


Q ss_pred             CCccchhhhhhcccCCCCCCCCcEEEEEecccccccC-----CccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcc
Q 015421           78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP-----NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH  152 (407)
Q Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~-----~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~  152 (407)
                      +|.+.......   +.....+.+++|+|+|+++....     ...++|+++|||||++||+|+|+|+|+|+++|.+|++.
T Consensus       148 ~~~~~~~~~p~---~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~~  224 (326)
T 3eag_A          148 FGVSARLPQTP---RQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRT  224 (326)
T ss_dssp             SSCSEECCCCC---SSCTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTT
T ss_pred             CCcceecCCcc---ccccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHHh
Confidence            76653211000   00123467899999998654321     12379999999999999999999999999999999999


Q ss_pred             cCCCceEEEeCCChhhHHHHhc-cccceEEeecCCCccccc-ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHH
Q 015421          153 MVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA  230 (407)
Q Consensus       153 ~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~  230 (407)
                      +++++.+|+|.|||.+..+... ...++++|+...++.... ...+. |.+...+..  +..+.++++|+||++|+++|+
T Consensus       225 ~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~g~-f~~~~~~~~--~~~~~l~l~G~hNv~NalaAi  301 (326)
T 3eag_A          225 VPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTEHGWQAGEANADGS-FDVLLDGKT--AGRVKWDLMGRHNRMNALAVI  301 (326)
T ss_dssp             SCTTSEEEEESSCHHHHHHHTTCCCSCEEEESSSSSEEEEEECTTSC-EEEEETTEE--EEEECCCCCSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCHHHHHHHhhccCCCEEEECCCCcEEEEEecCCcE-EEEEECCce--EEEEEecCCcHHHHHHHHHHH
Confidence            8889999999999999887653 345678887543332110 01112 433323321  224579999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHhhcCCCCC
Q 015421          231 LSVLGLDIGVDVEALNSTIEILRTPP  256 (407)
Q Consensus       231 ~~a~~~~lgi~~~~i~~~L~~~~~~~  256 (407)
                        +++..+|++.+.|.++|++|+|++
T Consensus       302 --a~a~~lGi~~~~i~~~L~~f~gv~  325 (326)
T 3eag_A          302 --AAARHVGVDIQTACEALGAFKNVK  325 (326)
T ss_dssp             --HHHHHHTCCHHHHHHHHHTCCCEE
T ss_pred             --HHHHHcCCCHHHHHHHHHhCCCCC
Confidence              899999999999999999999765

>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}

Probab=99.78  E-value=1.8e-18  Score=148.08  Aligned_cols=138  Identities=14%  Similarity=0.210  Sum_probs=86.1

Q ss_pred             HHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEECCCCCCCCCCCCcchHhh
Q 015421          242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKL  317 (407)
Q Consensus       242 ~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~g~~~~~~~~~~~~~~~~~  317 (407)
                      .++|+++|++|+|++||||++. ..++++|||| |||||++++++++.+    +++|+++|||...+..  ..+..+.++
T Consensus        11 ~~~i~~~L~~f~gv~~R~E~i~-~~~g~~vi~D-yaHnP~si~a~l~al~~~~~~~riivvf~~g~~s~--r~k~~~~~~   86 (163)
T 3mvn_A           11 VDLGTENLYFQSNAQRRLEVKG-VVNNITVYDD-FAHHPTAITATIDALRAKVGQQRILAVLEPRSNTM--KMGVHKHEL   86 (163)
T ss_dssp             ----------------CCEEEE-EETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEECCC-----------CHHH
T ss_pred             HHHHHHHHHhCCCCCCCeEEEe-cCCCcEEEEc-CCCCHHHHHHHHHHHHHhcCCCcEEEEECCCCcch--hhHHHHHHH
Confidence            3678899999999999999996 3678999999 699999999988776    3468889997653210  112245677


Q ss_pred             hhhccCccEEEEeCCChH--HHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCccccc
Q 015421          318 IEPLNHHRCVITFGYSGV--LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR  386 (407)
Q Consensus       318 ~~~l~~~~~v~~~g~~~~--~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~  386 (407)
                      +..+..+|.++++|....  .+.+.++..+  ..+.+++|+++|++.+.+.+++||+||++ |+++|+.+.
T Consensus        87 ~~~~~~aD~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~eai~~~~~~~~~gDvVLv~-Gsg~~~~~~  154 (163)
T 3mvn_A           87 ATSLQDADSVFIYQPPTIEWQVSEVLANLA--QPAISADDVDELVMRIVQQAKPNDHILIM-SNGAFGGIH  154 (163)
T ss_dssp             HHHHTTCSEEEEECC----CCHHHHHTTCC--SCEEEESSHHHHHHHHHHHCCTTCEEEEE-CSSCGGGHH
T ss_pred             HHHHhcCCEEEEECCCCcccCHHHHHhhCC--CCeEEECCHHHHHHHHHHhCCCCCEEEEE-CCCCHHHHH
Confidence            777666899999985421  1333333322  25677899999999999999999999996 888887643

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=94.23  E-value=0.3  Score=45.92  Aligned_cols=107  Identities=20%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             CCcEEEEecC---CChHhHHHHHHHHHHhcCCceeeccc----------CCccchhhhhhc-------ccCCCCCCCCcE
Q 015421           42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN----------LGNPLSEAAFHC-------IALPSSKPKFQV  101 (407)
Q Consensus        42 ~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~~~g~----------~g~~~~~~~~~~-------~~~~~~~~~~~~  101 (407)
                      +.+.|.|+||   .|||+|+..|...|++.|+++...+.          .|.++.......       ........+.|+
T Consensus       168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~e~~i~~~~~~~~D~  247 (350)
T 2g0t_A          168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEI  247 (350)
T ss_dssp             CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHHHHHHHHHHHTTCSE
T ss_pred             cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHHHhhHHHhhhcCCCE
Confidence            4678999998   59999999999999999999743111          222222111110       000000346688


Q ss_pred             EEEEecccccccC------Cc--cccceEEEEec-CChhhhccC------CCHHHHHHHHHH
Q 015421          102 AVVEVSSYQMEIP------NK--YFCPTVSVVLN-LTPDHLERH------KTMKNYALTKCH  148 (407)
Q Consensus       102 ~V~E~g~~~l~~~------~~--~~~p~i~viTn-i~~dHl~~~------~t~e~i~~~K~~  148 (407)
                      .|+|-.++=..-.      ..  -.+|+..|+.. -++.|++.|      +++++....-..
T Consensus       248 ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~  309 (350)
T 2g0t_A          248 VFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIET  309 (350)
T ss_dssp             EEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHH
T ss_pred             EEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHH
Confidence            9999764311111      01  14788888865 555555544      566665544433

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.95  E-value=0.019  Score=56.47  Aligned_cols=64  Identities=19%  Similarity=0.190  Sum_probs=50.1

Q ss_pred             eeeeccccC-cCcHHHHHHHhcCCce--eeHHHHHHhhCC----CCCcEEEEecCCChHhH-HHHHHHHHHhc
Q 015421            4 LWLFLLEFQ-LKATGLACLLQSGKRV--MSELDFAAQVIP----RSIKILAVTGTNGKSTV-VTFVGQMLNHL   68 (407)
Q Consensus         4 ~~~~~~~~~-~~~p~l~~a~~~~~~~--l~~~~~~~~~~~----~~~~~I~VTGTnGKTTt-~~~l~~iL~~~   68 (407)
                      +||.++..+ .+++....|.+.++++  ..++++....++    +..-+|+|| |||||++ +.+|..-|++.
T Consensus        75 lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIs-T~Gksp~la~~ir~~ie~~  146 (457)
T 1pjq_A           75 LAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVS-SGGTSPVLARLLREKLESL  146 (457)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEE-CCCCChHHHHHHHHHHHHh
Confidence            677777777 4777889999999998  788887665532    233399999 9999998 88888888865

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=92.45  E-value=0.12  Score=47.94  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=29.6

Q ss_pred             CCCcEEEEe--cCCChHhHHHHHHHHHHhcCCceee
Q 015421           41 RSIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (407)
Q Consensus        41 ~~~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~~   74 (407)
                      .+.++|+|+  |-.|||||+.-|+..|.+.|++|..
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVll   81 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQ   81 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEE
Confidence            367899999  6789999999999999999999853

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=91.72  E-value=0.18  Score=45.14  Aligned_cols=39  Identities=28%  Similarity=0.416  Sum_probs=31.0

Q ss_pred             HHhhCCCCCcEEEEecCC---ChHhHHHHHHHHHHhcCCcee
Q 015421           35 AAQVIPRSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        35 ~~~~~~~~~~~I~VTGTn---GKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +.++..++++.|.||||.   |||+++..|...|++.|+++.
T Consensus        18 ~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~   59 (251)
T 3fgn_A           18 ENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVA   59 (251)
T ss_dssp             ----CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence            344444578999999996   999999999999999999873

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=90.59  E-value=0.26  Score=42.09  Aligned_cols=31  Identities=26%  Similarity=0.447  Sum_probs=26.9

Q ss_pred             CcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421           43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        43 ~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +++|+|+   |-.||||++..|+..|...|.++.
T Consensus         1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vl   34 (206)
T 4dzz_A            1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIA   34 (206)
T ss_dssp             CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEE
Confidence            4688888   667899999999999999998874

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=90.56  E-value=0.28  Score=43.24  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=29.4

Q ss_pred             CCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      .+++.|.||||   .|||+++..|...|++.|+++.
T Consensus         2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~   37 (228)
T 3of5_A            2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSL   37 (228)
T ss_dssp             TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeE
Confidence            35788999999   5999999999999999999873

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=90.44  E-value=0.31  Score=40.80  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=28.2

Q ss_pred             CCCcEEEEecCC--ChHhHHHHHHHHHHhcCCceee
Q 015421           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV   74 (407)
Q Consensus        41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~~   74 (407)
                      +.+++|+|+|..  ||||+...|...|+..|+++..
T Consensus         2 ~~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~   37 (169)
T 1xjc_A            2 NAMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT   37 (169)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeE
Confidence            357899999975  9999999999999999988743

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=89.69  E-value=0.3  Score=42.37  Aligned_cols=31  Identities=29%  Similarity=0.187  Sum_probs=26.8

Q ss_pred             cEEEEecC---CChHhHHHHHHHHHHhcCCceee
Q 015421           44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (407)
Q Consensus        44 ~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~~   74 (407)
                      ++|.||++   .||||++.-|+..|.+.|+++..
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll   35 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG   35 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            57888865   79999999999999999998843

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=88.99  E-value=0.4  Score=44.99  Aligned_cols=143  Identities=13%  Similarity=0.058  Sum_probs=79.2

Q ss_pred             eeeccccC-cCcHHHHHHHhcCCceee--HHH-HHHhhCC-----CCCcEEEEecC---CChHhHHHHHHHHHHhcCCce
Q 015421            5 WLFLLEFQ-LKATGLACLLQSGKRVMS--ELD-FAAQVIP-----RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus         5 ~~~~~~~~-~~~p~l~~a~~~~~~~l~--~~~-~~~~~~~-----~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~   72 (407)
                      ||...+.+ .++|++.++.+.|..++.  .+. .+ ....     -+.+.|.|+||   .|||+|+..|...|++.|+++
T Consensus       106 Vvsglh~~l~~~pel~~~A~~g~~i~dvr~pp~~l-~~~~g~~~~v~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a  184 (349)
T 2obn_A          106 LVNGLHTPLANIPDLNALLQPGQLIWDVRKEPANL-DVASGAARTLPCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRS  184 (349)
T ss_dssp             EEECSSSCCTTCHHHHHHCCTTCCEEETTCCCSSC-CCCCSGGGGCSSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCE
T ss_pred             EEeCccchhhCCHHHHHHHHcCCEEEEeccCcccc-cccccceeeecceEEEEcCCCccccceeHHHHHHHHHHhcCCcE
Confidence            55555544 677888775444655542  111 11 1110     14678999998   599999999999999999997


Q ss_pred             eeccc---------CCccchhhhhhc-------ccCCCCCCCCcEEEEEeccc---ccccC--Cc--cccce-EEEEecC
Q 015421           73 FVGGN---------LGNPLSEAAFHC-------IALPSSKPKFQVAVVEVSSY---QMEIP--NK--YFCPT-VSVVLNL  128 (407)
Q Consensus        73 ~~~g~---------~g~~~~~~~~~~-------~~~~~~~~~~~~~V~E~g~~---~l~~~--~~--~~~p~-i~viTni  128 (407)
                      ...++         .|.|+.....++       ... ....++|+.++|--++   .+...  ..  -.+|+ +.++...
T Consensus       185 ~~~~tgqtg~~~~~~gi~~Dav~~df~aG~ve~~~~-~~~~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~  263 (349)
T 2obn_A          185 KFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVM-RYGKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRA  263 (349)
T ss_dssp             EEECCSHHHHHHHSCSCCGGGSBHHHHHHHHHHHHH-HHTTTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEET
T ss_pred             EEEeccchhhhhhcCCcchhHHHHHHHhhhHHHHHH-HhccCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECC
Confidence            43111         233332111110       000 1134678899997542   22100  01  13666 6677777


Q ss_pred             ChhhhccC-----CCHHHHHHHHHHh
Q 015421          129 TPDHLERH-----KTMKNYALTKCHL  149 (407)
Q Consensus       129 ~~dHl~~~-----~t~e~i~~~K~~i  149 (407)
                      +.-|++.|     +++++....-..+
T Consensus       264 ~~g~i~~~~~~~~p~l~~~i~t~e~l  289 (349)
T 2obn_A          264 GQTHNGNNPHVPIPPLPEVIRLYETV  289 (349)
T ss_dssp             TCCBCSSCTTSBCCCHHHHHHHHHHH
T ss_pred             CCceECCCCccCCCCHHHHHHHHHHH
Confidence            77666333     4666665554444

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=87.96  E-value=0.42  Score=42.04  Aligned_cols=32  Identities=16%  Similarity=0.298  Sum_probs=27.0

Q ss_pred             CCCcEEEEe---cCCChHhHHHHHHHHHHhc-CCce
Q 015421           41 RSIKILAVT---GTNGKSTVVTFVGQMLNHL-GIEA   72 (407)
Q Consensus        41 ~~~~~I~VT---GTnGKTTt~~~l~~iL~~~-g~~~   72 (407)
                      +..++|+|+   |-.||||++..|+..|... |.++
T Consensus         2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~V   37 (245)
T 3ea0_A            2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHV   37 (245)
T ss_dssp             -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCE
T ss_pred             CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCE
Confidence            356889998   5678999999999999998 8776

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=87.69  E-value=0.78  Score=41.45  Aligned_cols=33  Identities=18%  Similarity=0.374  Sum_probs=28.6

Q ss_pred             CCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++.++|.||++   .||||++.-|+..|.+.|.++.
T Consensus        80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVL  115 (271)
T 3bfv_A           80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTL  115 (271)
T ss_dssp             CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEE
Confidence            46789999965   6999999999999999998773

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=87.26  E-value=0.92  Score=41.61  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             CCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ...++|.||++   .||||++.-|+..|.+.|.++.
T Consensus       102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVL  137 (299)
T 3cio_A          102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVL  137 (299)
T ss_dssp             CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEE
Confidence            45689999976   6999999999999999998773

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=87.24  E-value=0.88  Score=41.49  Aligned_cols=32  Identities=16%  Similarity=0.245  Sum_probs=27.9

Q ss_pred             CCCcEEEEecC---CChHhHHHHHHHHHHhcCCce
Q 015421           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~   72 (407)
                      .+.++|.||++   .||||++.-|+..|.+.|.++
T Consensus        90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rV  124 (286)
T 3la6_A           90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRV  124 (286)
T ss_dssp             TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCE
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCE
Confidence            45689999865   689999999999999999877

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=87.21  E-value=1  Score=40.27  Aligned_cols=42  Identities=19%  Similarity=0.184  Sum_probs=32.1

Q ss_pred             HHHHHHhhCCCCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421           31 ELDFAAQVIPRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        31 ~~~~~~~~~~~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ..+...++. +..++|+|+++   .||||++..|+..|.+.|+++.
T Consensus         7 ~~~~a~~l~-~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vl   51 (262)
T 2ph1_A            7 DEEIKERLG-KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVG   51 (262)
T ss_dssp             HHHHHHHHT-TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEE
T ss_pred             hhhhhhhhc-cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            344444544 45679999854   5799999999999999998874

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=86.88  E-value=0.69  Score=41.09  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=29.4

Q ss_pred             CCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +..+.|.||||   .|||+++..|...|++.|+++.
T Consensus        19 ~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~   54 (242)
T 3qxc_A           19 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTI   54 (242)
T ss_dssp             CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             hcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceE
Confidence            35689999999   6999999999999999999873

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=85.66  E-value=0.69  Score=41.21  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=27.4

Q ss_pred             CCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++.++|+|+++   .||||++..|+..|...|.++.
T Consensus         4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vl   39 (257)
T 1wcv_1            4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVL   39 (257)
T ss_dssp             -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEE
Confidence            35689999854   5799999999999999998773

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=85.31  E-value=0.89  Score=39.63  Aligned_cols=30  Identities=23%  Similarity=0.427  Sum_probs=25.6

Q ss_pred             cEEEEec---CCChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VTG---TnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++|+|++   -.||||++..|+..|.+.|+++.
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl   35 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVL   35 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            6788874   56899999999999999998773

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=84.70  E-value=0.96  Score=40.04  Aligned_cols=29  Identities=31%  Similarity=0.439  Sum_probs=25.2

Q ss_pred             cEEEEe---cCCChHhHHHHHHHHHHhcCCce
Q 015421           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~   72 (407)
                      ++|+|+   |-.||||++..|+..|...|+++
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~V   34 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKT   34 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcE
Confidence            678886   55689999999999999999877

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=84.56  E-value=0.83  Score=40.82  Aligned_cols=30  Identities=27%  Similarity=0.336  Sum_probs=24.6

Q ss_pred             cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++|+|.  |-.||||++..|+..|...|+++.
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vl   33 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIM   33 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEE
Confidence            455554  678999999999999999998773

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=84.45  E-value=1.1  Score=41.64  Aligned_cols=32  Identities=25%  Similarity=0.508  Sum_probs=27.2

Q ss_pred             CCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +..+|+|+|.+  |||||+..|+..|...|.++.
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVl  137 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVL  137 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            45699999775  799999999999998887764

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=84.44  E-value=1  Score=40.81  Aligned_cols=31  Identities=26%  Similarity=0.339  Sum_probs=26.0

Q ss_pred             CcEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           43 IKILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        43 ~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +++|+|+  |-.||||++.-|+..|.+.|+++.
T Consensus         2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVl   34 (289)
T 2afh_E            2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVM   34 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEE
Confidence            4566665  678999999999999999998874

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=84.25  E-value=0.89  Score=40.62  Aligned_cols=31  Identities=23%  Similarity=0.355  Sum_probs=26.0

Q ss_pred             CCCcEEEEecC---CChHhHHHHHHHHHHhcCCce
Q 015421           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~   72 (407)
                      ++.++|+|++.   .||||++..|+..|. .|.++
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~V   58 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKV   58 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCE
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCE
Confidence            46789999754   579999999999999 88776

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=84.03  E-value=0.9  Score=41.24  Aligned_cols=31  Identities=26%  Similarity=0.326  Sum_probs=26.9

Q ss_pred             CcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421           43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        43 ~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      .++|+|+   |-.||||++..|+..|...|+++.
T Consensus         4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vl   37 (286)
T 2xj4_A            4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVA   37 (286)
T ss_dssp             CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEE
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            3589998   567899999999999999998874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=83.56  E-value=1.2  Score=40.97  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=26.8

Q ss_pred             CCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ...+|+|+|.+  |||||+..|+..+...|.++.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~  136 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV  136 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence            45689999876  799999999999998876663

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=82.92  E-value=2  Score=36.49  Aligned_cols=32  Identities=28%  Similarity=0.460  Sum_probs=26.7

Q ss_pred             CCCcEEEEecCC--ChHhHHHHHHHHHHhcCCce
Q 015421           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~   72 (407)
                      .+..+|+|+|.+  ||||++.+|...|...|..+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v   53 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV   53 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence            356799999986  89999999999998766554

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=81.74  E-value=1.4  Score=37.95  Aligned_cols=28  Identities=32%  Similarity=0.516  Sum_probs=24.1

Q ss_pred             EEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421           45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        45 ~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +|+|+   |-.||||++..|+..|...| ++.
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vl   32 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETL   32 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEE
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEE
Confidence            56666   67799999999999999999 874

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=81.46  E-value=1.5  Score=38.86  Aligned_cols=30  Identities=30%  Similarity=0.556  Sum_probs=25.4

Q ss_pred             cEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++|+|+   |-.||||++..|+..|...|.++.
T Consensus         3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl   35 (263)
T 1hyq_A            3 RTITVASGKGGTGKTTITANLGVALAQLGHDVT   35 (263)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence            577776   456899999999999999998874

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=81.00  E-value=1.5  Score=41.58  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=28.0

Q ss_pred             CCCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421           41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        41 ~~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++.++|+|+   |-.||||++.-|+..|...|.++.
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVl  176 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVF  176 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEE
Confidence            357899998   456899999999999999998773

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=80.68  E-value=0.72  Score=41.99  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.2

Q ss_pred             ecCCChHhHHHHHHHHHHhcCCce
Q 015421           49 TGTNGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        49 TGTnGKTTt~~~l~~iL~~~g~~~   72 (407)
                      -|-.||||++..|+..|...|+++
T Consensus        45 KGGvGKTT~a~nLA~~la~~G~rV   68 (298)
T 2oze_A           45 KGGVGKSKLSTMFAYLTDKLNLKV   68 (298)
T ss_dssp             SSSSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCchHHHHHHHHHHHHHhCCCeE
Confidence            357899999999999999988776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	407
d2jfga2	140	c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanin	2e-24
d1p3da3	215	c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine	1e-16
d1gg4a4	214	c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl	2e-15
d2jfga3	204	c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine	4e-13
d1e8ca3	234	c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptid	1e-12
d1j6ua3	207	c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine l	2e-10
d2gc6a2	296	c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {	2e-04
d1o5za2	296	c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase	4e-04

>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 140

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 95.8 bits (237), Expect = 2e-24
 Identities = 45/144 (31%), Positives = 61/144 (42%), Gaps = 10/144 (6%)

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
           PHR ++V  +  GV W++DSKATN+ +T   L  L     + LL G        +S  F 
Sbjct: 3   PHRFEVV-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGG-----DGKSADFS 56

Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
            L   LN     +            L              M+ A+         GD ++L
Sbjct: 57  PLARYLNGDNVRLYCFGRDGAQLAAL----RPEVAEQTETMEQAMRLLAPRVQPGDMVLL 112

Query: 376 SPGCASFDEFRNFEHRGMVFQELA 399
           SP CAS D+F+NFE RG  F  LA
Sbjct: 113 SPACASLDQFKNFEQRGNEFARLA 136

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 215

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

 Score = 76.0 bits (186), Expect = 1e-16
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 15/213 (7%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
           R    +AV GT+GK+T    +  +     ++                      +     +
Sbjct: 10  RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNG-------GLVKSAGKNAHLGASR 62

Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
             + E         +    P VSVV N+ PDH++ ++   +    T      ++    L 
Sbjct: 63  YLIAEADESDASFLH--LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 120

Query: 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH---NMK 216
           ++   +  L E +      +   G         E    +       V+          + 
Sbjct: 121 VMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLN 180

Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
           V G+HN  N  AA+A     G+     +EAL  
Sbjct: 181 VPGKHNALNATAALAVAKEEGIANEAILEALAD 213

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

 Score = 72.4 bits (176), Expect = 2e-15
 Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 13/213 (6%)

Query: 44  KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +++A+TG++GK++V      +L+  G   +  GNL N +          P          
Sbjct: 3   RVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELG 62

Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
                           P  ++V NL   HLE   ++   A  K  +FS +    + ++  
Sbjct: 63  ANHQGEIA-WTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNA 121

Query: 164 GNQHLNE---AIKGHRFNLAWIGA----FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
            N         I   +       A    F    I   +    F +        + L    
Sbjct: 122 DNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLL---P 178

Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
           + GRHN  N  AA A    +G  +      L +
Sbjct: 179 LPGRHNIANALAAAALSMSVGATLDAIKAGLAN 211

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 204

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 65.9 bits (159), Expect = 4e-13
 Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 19/219 (8%)

Query: 31  ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI 90
           +++   +       I+A+TG+NGKSTV T VG+M    G+   VGGN             
Sbjct: 1   DIELFCREAQ--APIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN---------IGLP 49

Query: 91  ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF 150
           AL     + ++ V+E+SS+Q+E  +       +++             ++ Y   K  ++
Sbjct: 50  ALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIY 109

Query: 151 SHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
            +        +   +  L   I+G        G   G       +  ++       V   
Sbjct: 110 ENAKVC----VVNADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVL-- 163

Query: 211 QLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
            +  MK+ G+HNY N  AA+A     GL     ++AL +
Sbjct: 164 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTT 202

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 234

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

 Score = 65.2 bits (157), Expect = 1e-12
 Identities = 44/229 (19%), Positives = 73/229 (31%), Gaps = 22/229 (9%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA------------AFH 88
            +++++ VTGTNGK+T    + Q    LG  + V G +GN L                  
Sbjct: 3   DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQ 62

Query: 89  CIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
                          +EVSS+ + +          SV  NL+ DHL+ H  M++Y   K 
Sbjct: 63  HELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKW 122

Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
            L+S     +  +            K        +              A+         
Sbjct: 123 LLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGA 182

Query: 208 SQLQLHN-------MKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
           +     +         +MG  N  N   A+A L  LG  +   ++    
Sbjct: 183 TIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAAR 231

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 207

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.2 bits (139), Expect = 2e-10
 Identities = 39/208 (18%), Positives = 61/208 (29%), Gaps = 21/208 (10%)

Query: 44  KILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQV 101
           +  AVTGT+GK+T    V  +L HL      F+GG + +                     
Sbjct: 15  EEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKGN----------- 63

Query: 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161
             V     + E     F P   ++ N   DHLE +        +     S   +  +   
Sbjct: 64  GPVVYELDESEEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVTFA 123

Query: 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
                     +        +           +             +       +KV G H
Sbjct: 124 EDELTSHLGDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLEL------KLKVPGFH 177

Query: 222 NYHN--AAVAALSVLGLDIGVDVEALNS 247
           N  N  A +A    LG D+   +EAL  
Sbjct: 178 NVLNALAVIALFDSLGYDLAPVLEALEE 205

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Length = 296

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 17/137 (12%), Positives = 38/137 (27%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
           +  + + VTGTNGK +    +  +L   G+   +                  P       
Sbjct: 37  QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALV 96

Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
            AV  V +    +  +     V+    +T       +  +              ++   +
Sbjct: 97  NAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVI 156

Query: 161 LPFGNQHLNEAIKGHRF 177
            P  +     A+   + 
Sbjct: 157 TPVVSVLTEVALDHQKL 173

>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 30/251 (11%), Positives = 62/251 (24%), Gaps = 41/251 (16%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP-------LSEAAFHCIALP 93
              K + + GTNGK +V   V  +L   G       +           L+E       + 
Sbjct: 41  LEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVV 100

Query: 94  SSKPKFQVAVVEVSSYQMEIPNKYFCPTV---------SVVLNLTPDHLERHKTMKNYAL 144
                 +  + E+   ++  P+ +   T          +V + +    L       N   
Sbjct: 101 KIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVF 160

Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR---FNLAWIGAFPGVKIDTEAKTASFEV 201
             C     +       L +  + +     G       L             E        
Sbjct: 161 PLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSS 220

Query: 202 PAVGVVSQLQLHNMKVM----------------------GRHNYHNAAVAALSVLGLDIG 239
               +     +    +                       G H   NA VA  ++    + 
Sbjct: 221 RMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGLP 280

Query: 240 VDVEALNSTIE 250
           +  +A+   ++
Sbjct: 281 LSEKAIREGLK 291

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	407
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	100.0
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	100.0
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	100.0
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	100.0
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	100.0
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	99.97
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	99.97
d2jfga2	140	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	99.92
d1gg4a1	135	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	99.83
d1e8ca2	160	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	99.65
d1j6ua2	151	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	99.37
d1p3da2	152	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	99.29
d2gc6a1	129	Folylpolyglutamate synthetase, C-terminal domain {	99.15
d1o5za1	137	Folylpolyglutamate synthetase, C-terminal domain {	99.1
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.13
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.78
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	92.49
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	92.13
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	91.31
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	90.73
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	90.59
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	90.11
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.4
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	89.34
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	87.75
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.28
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	85.38
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	84.66
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	84.64
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	84.6
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	83.03
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	82.66

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=3.3e-37  Score=275.57  Aligned_cols=207  Identities=18%  Similarity=0.209  Sum_probs=159.2

Q ss_pred             HHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCcee-ecccCCccchhhhhhcccCCCCCCCCcEEEEEeccc
Q 015421           31 ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY  109 (407)
Q Consensus        31 ~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~-~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~  109 (407)
                      |.|+++++. +..++|+||||||||||++||+++|+..|+++. +.|++..++....        .....+++|+|+|++
T Consensus         1 r~e~L~~~~-r~~~~I~ITGTnGKTTt~~~l~~iL~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~v~E~~~~   71 (215)
T d1p3da3           1 RAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNA--------HLGASRYLIAEADES   71 (215)
T ss_dssp             HHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTTTEEE--------ECCSSSEEEEECCCT
T ss_pred             CHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCceEeeCceeccCcccc--------ccCCCceEEEEcCCc
Confidence            457777776 567899999999999999999999999998874 4444433332211        123557899999987


Q ss_pred             ccccCCccccceEEEEecCChhhhccC-CCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccccceEEeecCCCc
Q 015421          110 QMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV  188 (407)
Q Consensus       110 ~l~~~~~~~~p~i~viTni~~dHl~~~-~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~  188 (407)
                      +....  .++||++|||||++||+|+| +++|+|+++|..+++.+++++.+|+|.||+....+......++++||.+...
T Consensus        72 ~~~~~--~~~p~~~viTNi~~dHld~~~~s~e~~~~~K~~i~~~~~~~g~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~  149 (215)
T d1p3da3          72 DASFL--HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQA  149 (215)
T ss_dssp             TSGGG--GCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHCSEEEEEESSTTC
T ss_pred             cccce--eEcCCEEEEecccccccccccCCHHHHHHHHHHHHhcCCCCCEEEEeCcchHHHHHHHhcCCceEEEcccccc
Confidence            65543  27999999999999999988 6999999999999999999999999999999999887777788899876432


Q ss_pred             cccc-----ccccce-eEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 015421          189 KIDT-----EAKTAS-FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (407)
Q Consensus       189 ~~~~-----~~~~~~-~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~  253 (407)
                      ....     ...... +........   ..+.+|++|.||++|+++|+  ++|..+|+++++|.++|++|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~l~G~hn~~N~laAi--a~a~~lGi~~~~i~~~L~~Fk  215 (215)
T d1p3da3         150 DYRIEDYEQTGFQGHYTVICPNNER---INVLLNVPGKHNALNATAAL--AVAKEEGIANEAILEALADFQ  215 (215)
T ss_dssp             SEEEEEEEEETTEEEEEEECTTCCE---EEEEESSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCC
T ss_pred             cccccccccccccccccccccccce---eeEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence            1110     000111 111111111   23468999999999999999  899999999999999999985

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.2e-36  Score=265.54  Aligned_cols=202  Identities=27%  Similarity=0.422  Sum_probs=157.9

Q ss_pred             HHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhcccCCCCCCCCcEEEEEecccc
Q 015421           31 ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQ  110 (407)
Q Consensus        31 ~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~  110 (407)
                      +++++.+..  +.|+|+||||||||||++||+++|+..|.++.+.|++|.|.....         ..+.+++|+|+|+++
T Consensus         1 ~~~lf~~~~--~~~vI~VTGT~GKTTt~~~l~~iL~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~V~E~~~~~   69 (204)
T d2jfga3           1 DIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLL---------DDECELYVLELSSFQ   69 (204)
T ss_dssp             HHHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEETTSSCGGGGC---------CTTCCEEEEECCHHH
T ss_pred             CHHHHhhcC--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCcccCCcccccccccc---------cccceEEEEeecccc
Confidence            467777776  579999999999999999999999999999999999999976542         456789999999876


Q ss_pred             cccCCccccceEEEEecCChhhhccCCC-HHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccccceEEeecCCC-c
Q 015421          111 MEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG-V  188 (407)
Q Consensus       111 l~~~~~~~~p~i~viTni~~dHl~~~~t-~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~-~  188 (407)
                      ...... ++|+++|||||++||+|+|++ ++.+.+.|..+++   +.+.+|+|.||+....+. ....+.++|+.... +
T Consensus        70 ~~~~~~-~~p~i~viTNi~~dHld~~~~~~~~~~~~~~~i~~---~~~~~v~n~dd~~~~~~~-~~~~~~i~~~~~~~~~  144 (204)
T d2jfga3          70 LETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE---NAKVCVVNADDALTMPIR-GADERCVSFGVNMGDY  144 (204)
T ss_dssp             HHTCCC-CCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGT---TCSEEEEETTCGGGSCTT-CCCTTEEEECSSSSSE
T ss_pred             cccccc-cccccceeeeeccccccccccHHHHHHHHHHhhhc---cccceeehhhhHHHHHHH-ccCCceEEeeccccch
Confidence            554443 899999999999999999985 8999999999987   467899999999876553 34567888876532 1


Q ss_pred             ccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 015421          189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (407)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~  253 (407)
                      ..........+...  + .......+++++|+||++|+++|+  ++|..+|++++.|+++|++|+
T Consensus       145 ~~~~~~~~~~~~~~--~-~~~~~~~~~~l~G~hn~~N~laAi--a~a~~lGi~~~~i~~~L~~Ft  204 (204)
T d2jfga3         145 HLNHQQGETWLRVK--G-EKVLNVKEMKLSGQHNYTNALAAL--ALADAAGLPRASSLKALTTFT  204 (204)
T ss_dssp             EEEEETTEEEEEET--T-EEEEEGGGCSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHHCC
T ss_pred             hhcccccccceeec--C-CccccccccCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence            11111111111111  1 112223468999999999999999  899999999999999999985

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-35  Score=266.87  Aligned_cols=211  Identities=22%  Similarity=0.215  Sum_probs=151.7

Q ss_pred             CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhcc-cCC-----------CCCCCCcEEEEEecc
Q 015421           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI-ALP-----------SSKPKFQVAVVEVSS  108 (407)
Q Consensus        41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~-~~~-----------~~~~~~~~~V~E~g~  108 (407)
                      +++++|+||||||||||++||+++|+..|+++.+.|++|.++........ +++           ....+++++++|+++
T Consensus         3 ~~~~vI~ITGT~GKTTt~~~l~~iL~~~g~~~~~~gt~g~~~~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~~le~ss   82 (234)
T d1e8ca3           3 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSS   82 (234)
T ss_dssp             GSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             cCCeEEEEECCCcHHHHHHHHHHHHHHCCCCeEEECccccCcCccccccccccccchhHHHHHHHHhhcCCceeeeccCc
Confidence            57899999999999999999999999999999888877665432211110 000           013467889999996


Q ss_pred             cc-cccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccccceEE-eecCC
Q 015421          109 YQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW-IGAFP  186 (407)
Q Consensus       109 ~~-l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~-~~~~~  186 (407)
                      .+ .......++|+++|||||++||+|+|+++|+|+++|.++++. .+.+.+|+|.|||....+.........+ +....
T Consensus        83 ~g~~~~~~~~~~p~i~vitNi~~dHld~~~~~e~~~~~K~~i~~~-~~~~~~iin~Dd~~~~~~~~~~~~~~~~~~~~~~  161 (234)
T d1e8ca3          83 HGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI  161 (234)
T ss_dssp             HHHHTTTTTTCBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCC
T ss_pred             cchhhhhhcccccceEEEeeccccchhhhccccceehhhhccccc-cccceeEEecccccchhhhhhhccceeeeecccc
Confidence            43 343334589999999999999999999999999999999986 4567899999999999887655433322 22111


Q ss_pred             Cccccc-ccccceeEeccCCeeeee------eecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 015421          187 GVKIDT-EAKTASFEVPAVGVVSQL------QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT  254 (407)
Q Consensus       187 ~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~  254 (407)
                      ...... +.....+.....+..+.+      ..+.++++|.||++|+++|+  ++|+.+|+++++|.++|++|+|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~hni~N~laAi--ava~~lGi~~~~i~~~l~~fkP  234 (234)
T d1e8ca3         162 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQP  234 (234)
T ss_dssp             CTTTCSEEEEEEEEEECSSCEEEEEEETTCCEEEEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCC
T ss_pred             ccccccccccccccccccccceeeeecCCceEEEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCC
Confidence            111000 001111222222222211      12468999999999999999  8999999999999999999986

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.8e-35  Score=260.22  Aligned_cols=202  Identities=20%  Similarity=0.304  Sum_probs=147.8

Q ss_pred             CcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhcccCCCCCCCCcEEEEEeccccc---ccCCcccc
Q 015421           43 IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM---EIPNKYFC  119 (407)
Q Consensus        43 ~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l---~~~~~~~~  119 (407)
                      .++|+||||||||||++||+++|+..|.++++.|+++.++.......    ....+.++.++|+++.+.   +.....+.
T Consensus         2 ~kvI~VTGTnGKTTt~~mi~~iL~~~g~~~~~~g~~n~~~g~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~~~~~~~   77 (214)
T d1gg4a4           2 ARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLL----RLTPEYDYAVIELGANHQGEIAWTVSLTR   77 (214)
T ss_dssp             CEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTHHHHHHT----TCCTTCSEEEEECCCSSSSHHHHHHHHHC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHHhCCCCEEEeCcccCccccchhhh----hcccccccchhhhhhhhcccccccccccC
Confidence            37999999999999999999999999999999999887765432211    124567889999995432   22223478


Q ss_pred             ceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccc-cceEEeecCCC-ccc-----cc
Q 015421          120 PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-FNLAWIGAFPG-VKI-----DT  192 (407)
Q Consensus       120 p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~-~~~~~~~~~~~-~~~-----~~  192 (407)
                      |+++|+|||++||+|+|+++|+|+++|..+++.+++.+.+|+|.||+.+..+..... .++.+|+.... .++     ..
T Consensus        78 p~~~viTNi~~dHld~~~~~~~~~~~k~~~~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~  157 (214)
T d1gg4a4          78 PEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHV  157 (214)
T ss_dssp             CSEEEECCCC--------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHTTSEEEEECSSCTTCSBEEEEEEE
T ss_pred             chheeeehhccccccccccHHHHHhhhhhHhhhhccCCccccccccHHHHHHHHHhcCCceeeeccCCCCcceeeeeEEE
Confidence            999999999999999999999999999999999999999999999999888765443 45667775421 111     11


Q ss_pred             ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 015421          193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (407)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~  253 (407)
                      ......+.+...+..+   .+.+|++|.||++|+++|+  +++..+|++++.|.++|++|+
T Consensus       158 ~~~~~~~~i~~~~~~~---~~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~~l~~fk  213 (214)
T d1gg4a4         158 TSHGTEFTLQTPTGSV---DVLLPLPGRHNIANALAAA--ALSMSVGATLDAIKAGLANLK  213 (214)
T ss_dssp             CSSSEEEEEEETTEEE---EEEECSSSTHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCC
T ss_pred             eCCceEEEEEECCceE---EEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence            1122233333332222   2468999999999999999  899999999999999999997

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.3e-33  Score=247.22  Aligned_cols=200  Identities=22%  Similarity=0.261  Sum_probs=143.1

Q ss_pred             HHHHHHhhC-CCCCcEEEEecCCChHhHHHHHHHHHHhcCCce-eecccCCccchhhhhhcccCCCCCCCCcEEEEEecc
Q 015421           31 ELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSS  108 (407)
Q Consensus        31 ~~~~~~~~~-~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~-~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~  108 (407)
                      |++++...+ .++.++|+||||||||||++||+++|+..|.++ ...|.++.++.....        ..+.+++|+|+++
T Consensus         1 r~~~~~~~l~~~~~~~iAITGTnGKTTt~~~l~~iL~~~g~~~~~~~g~~~~~~~~~~~--------~~~~~~~v~e~~e   72 (207)
T d1j6ua3           1 RLHYFRDTLKREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNY--------EKGNGPVVYELDE   72 (207)
T ss_dssp             HHHHHHHHHHHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSE--------ECCSSCEEEEECT
T ss_pred             ChHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCccccccchhc--------cCCCcceeEEeee
Confidence            455555433 236789999999999999999999999999875 445666666543322        3455679999996


Q ss_pred             cccccCCccccceEEEEecCChhhhccCC-CHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccccceEEeecCCC
Q 015421          109 YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG  187 (407)
Q Consensus       109 ~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~  187 (407)
                      .+..  ...++|+++|||||++||+|+|+ ++|.|.++|..+++   ..+.+|+|.||+....+..      ++++....
T Consensus        73 ~~~~--~~~~~p~iaviTNI~~dHLd~~~~~~~~~~~~k~~~~~---~~~~~i~n~dd~~~~~~~~------~~~g~~~~  141 (207)
T d1j6ua3          73 SEEF--FSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISR---NTDLVVTFAEDELTSHLGD------VTFGVKKG  141 (207)
T ss_dssp             TSGG--GGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHH---TCSEEEEETTCTTTGGGCS------EEECSSSS
T ss_pred             chhh--hhhhhhceeeeeechhhhhhccCccccccccccchhhh---hcccccccccccccccccc------cccccccc
Confidence            5422  22479999999999999999998 79999999999987   4678999999987654432      23332211


Q ss_pred             -cccc--cccc-cceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 015421          188 -VKID--TEAK-TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (407)
Q Consensus       188 -~~~~--~~~~-~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~  253 (407)
                       +.+.  .... ...+.....+..  ...++++++|.||++|+++|+  ++|..+|++.++|.++|++|+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~NalaAi--ava~~lgi~~~~i~~~L~~FK  207 (207)
T d1j6ua3         142 TYTLEMRSASRAEQKAMVEKNGKR--YLELKLKVPGFHNVLNALAVI--ALFDSLGYDLAPVLEALEEFR  207 (207)
T ss_dssp             SEEEEEEEECSSCEEEEEEETTEE--EEEEEESSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHHCC
T ss_pred             cccccccccccccccccccccCcE--EEEEEeCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence             1110  0001 111112122221  123579999999999999999  899999999999999999986

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.97  E-value=6.1e-30  Score=238.95  Aligned_cols=214  Identities=15%  Similarity=0.123  Sum_probs=147.0

Q ss_pred             eeHHHHHHhhC---CCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecc--c----------CCccchhhhhhc----
Q 015421           29 MSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG--N----------LGNPLSEAAFHC----   89 (407)
Q Consensus        29 l~~~~~~~~~~---~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g--~----------~g~~~~~~~~~~----   89 (407)
                      |.|+..+...+   ++++++|+||||||||||++|++++|+++|+++++.+  +          .|.+++...+..    
T Consensus        22 l~r~~~~l~~lg~P~~~lkvI~VTGTNGKtST~~~i~~IL~~~G~kvG~~tSP~~~~~~e~~~~~~~~i~~~~~~~~~~~  101 (296)
T d2gc6a2          22 HRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALVNAVAF  101 (296)
T ss_dssp             CHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchhhCCEEEEeccCcHHHHHHHHHHHHHhcCCceeeeecccccchhhhhcccccCCcHHHHHHHHHH
Confidence            45555444333   3679999999999999999999999999999995422  2          133333322110    


Q ss_pred             ----------ccCC----------------CCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHH
Q 015421           90 ----------IALP----------------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN  141 (407)
Q Consensus        90 ----------~~~~----------------~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~  141 (407)
                                ....                ......|++++|+| ++.+|.++. ++|+++|+|||+.||++++| |+|+
T Consensus       102 i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~~i~e~g~g~~~d~~~~-~~~~~~viTni~~dH~~~lg~tle~  180 (296)
T d2gc6a2         102 VRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNV-ITPVVSVLTEVALDHQKLLGHTITA  180 (296)
T ss_dssp             HHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-CCCSEEEECCCCSTTHHHHCSSHHH
T ss_pred             HHHHHHhHHhhccCCCccHHHHHHHHHHHHHHHhcchhhhhhhHHHHhhhhhhc-ccceeecccccchHHHHhhhhHHHH
Confidence                      0000                01356789999999 578888886 79999999999999999986 9999


Q ss_pred             HHHHHHHhhcccCCCceEEEeCCChhhHHHH----hccccceEEeecCCCccccc---ccccceeEeccCCeeeeeeecc
Q 015421          142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHN  214 (407)
Q Consensus       142 i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  214 (407)
                      |+.+|+++++   ++..+|+..+++.+....    ...+...++++.+  +.+..   ......|.+.....  .+..+.
T Consensus       181 Ia~~K~~i~k---~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  253 (296)
T d2gc6a2         181 IAKHKAGIIK---RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRD--FSVPKAKLHGWGQRFTYEDQDG--RISDLE  253 (296)
T ss_dssp             HHHHHHTTCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--EEEEEEEECSSSEEEEEEETTE--EEEEEE
T ss_pred             HHHhhhcccc---cccccccccccHHHHHHHHHHHHhhCCcccccCcc--eeeeccccccCCceEEEEcCCC--ccCcCC
Confidence            9999999997   567788877776554443    2234455555432  22211   11122233322211  122357


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHcC------CCHHHHHHHhhcC
Q 015421          215 MKVMGRHNYHNAAVAALSVLGLDIG------VDVEALNSTIEIL  252 (407)
Q Consensus       215 l~~~G~~~~~Nal~A~~~a~~~~lg------i~~~~i~~~L~~~  252 (407)
                      ++++|+||++|+++|+  +++..++      ++.+.|++||++.
T Consensus       254 l~L~G~hn~~Na~~Ai--a~~~~l~~~~~~~i~~e~I~~GL~~~  295 (296)
T d2gc6a2         254 VPLVGDYQQRNMAIAI--QTAKVYAKQTEWPLTPQNIRQGLAAS  295 (296)
T ss_dssp             ESCCSHHHHHHHHHHH--HHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred             CCCCcHHHHHHHHHHH--HHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence            8999999999999999  6666553      8999999999863

>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.4e-24  Score=176.97  Aligned_cols=137  Identities=35%  Similarity=0.522  Sum_probs=116.5

Q ss_pred             CCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC-CCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEEeC
Q 015421          254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFG  331 (407)
Q Consensus       254 ~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~g  331 (407)
                      |+|+|||.+. ..+++.+||||.++||+|+.+|++.+. .+++++|+|+.....+      +.++.+.+.. ...++++|
T Consensus         1 GLpHR~e~v~-~~~gv~fiNDSKaTn~~a~~~Al~~~~~~~~iiLI~GG~~K~~d------~~~L~~~i~~~~~~v~~~G   73 (140)
T d2jfga2           1 GLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSAD------FSPLARYLNGDNVRLYCFG   73 (140)
T ss_dssp             CCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCTTCC------CGGGGGGSCSSSEEEEEES
T ss_pred             CCCcceEEEE-EcCCEEEEECCccccHHHHHHHHhhhhccCceEEEeeccccccc------hhhhhhhhhccchhhhhhc
Confidence            6899999997 479999999999999999999999996 4678899998755443      3456665543 67899999


Q ss_pred             CChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhh
Q 015421          332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFS  402 (407)
Q Consensus       332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l  402 (407)
                      +....+...+.     ..+..++++++|++.+.+.+++||+||++|||+||++|+||++||..|.++|+.|
T Consensus        74 ~~~~~i~~~~~-----~~~~~~~~l~~av~~a~~~~~~g~~VLlSPa~aSfD~f~nfeeRG~~F~~lV~~l  139 (140)
T d2jfga2          74 RDGAQLAALRP-----EVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKEL  139 (140)
T ss_dssp             TTHHHHHTTSG-----GGEEECSSHHHHHHHHGGGCCTTCEEEECCSSBSTTTSSSHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHh-----hhhhhHHHHHHHHHHHHHhcccCCEEEECCCccchhhhhCHHHHHHHHHHHHHHc
Confidence            99887765432     2345678999999999999999999999999999999999999999999999876

>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.8e-21  Score=157.82  Aligned_cols=129  Identities=16%  Similarity=0.147  Sum_probs=105.7

Q ss_pred             CCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEECCCCCCCCCCCCcchHhhhhhccC--ccEEEEe
Q 015421          255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVITF  330 (407)
Q Consensus       255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~--~~~v~~~  330 (407)
                      +|||++.+. ..++.++|||+||+||+||++||+.+.  ++|+++|+|+|.|+|..+. ..|+++++.++.  .|.++++
T Consensus         1 vpgR~~~~~-~~~g~~iIdDsYNAnP~Sm~aAl~~l~~~~~~ki~vLGdM~ELG~~s~-~~H~~l~~~~~~~~id~v~~v   78 (135)
T d1gg4a1           1 VPGRLFPIQ-LAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESE-ACHVQVGEAAKAAGIDRVLSV   78 (135)
T ss_dssp             CTTSSEEEE-EETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCCCTTHHH-HHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCCeEEE-cCCCcEEEecCCcCCHHHHHHHHHHhhccCCCceEEEcccccchhhHH-HHHHHHHHHHHhhcCCeEeee
Confidence            589999997 468899999999999999999998873  4688999999999999874 478889887653  7999999


Q ss_pred             CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCC--EEEEcCCCCCcccccChhhhhHHHHHHHhhhc
Q 015421          331 GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD--AIVLSPGCASFDEFRNFEHRGMVFQELAFFSK  403 (407)
Q Consensus       331 g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd--~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l~  403 (407)
                      |+....+.....      ...++.+.++++..+.....++|  +|||| |           ||++.||++|+.|+
T Consensus        79 G~~~~~~~~~~~------~~~~f~~~~~~~~~l~~~l~~~~~~~ILvK-G-----------Sr~~~le~iv~~Lk  135 (135)
T d1gg4a1          79 GKQSHAISTASG------VGEHFADKTALITRLKLLIAEQQVITILVK-G-----------SRSAAMEEVVRALQ  135 (135)
T ss_dssp             SSSTHHHHHHTT------SCEEESSHHHHHHHHHHHHHHCSSEEEEEE-C-----------CGGGTTHHHHHHHC
T ss_pred             chHHHHHHHhcC------cccccCCHHHHHHHHHHHhhcCCCCEEEEE-e-----------cccccHHHHHHHhC
Confidence            998877665421      22456788899888877666665  58887 5           79999999999986

>d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=8.3e-16  Score=128.69  Aligned_cols=145  Identities=14%  Similarity=0.042  Sum_probs=103.5

Q ss_pred             CCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc---CCCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEEe
Q 015421          255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITF  330 (407)
Q Consensus       255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~  330 (407)
                      +|||||++.. .+++.||.| |||||+|+.++++.+   ..+++++|+|+.++++...    ..++++.+.+ +|.++++
T Consensus         1 V~GR~E~i~~-~~~p~VIvD-yAHNp~ai~~l~~~~k~~~~~~~~~V~g~~gdr~~~~----~~~~~~~~~~~~D~vi~t   74 (160)
T d1e8ca2           1 VCGRMEVFTA-PGKPTVVVD-YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGK----RPLMGAIAEEFADVAVVT   74 (160)
T ss_dssp             CTTSSEEECC-TTSCEEEEE-CCCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSCSTH----HHHHHHHHHHHCSEEEEC
T ss_pred             CCCCcEEEec-CCCCEEEEE-CCCCHHHHHHHHHHhhhhcccccceeeeehhcccchh----hhhhhccchhccchhhhc
Confidence            6999999952 456677777 599999999998876   3578999999887775432    4455555543 6788876


Q ss_pred             -----CCChHHHHHHHHhCCC-CccccccccHHHHHHHHHHhcCCCCEEEEc-CCCCCcccccC---hhhhhHHHHHHHh
Q 015421          331 -----GYSGVLIWKTLVNNGL-SIPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN---FEHRGMVFQELAF  400 (407)
Q Consensus       331 -----g~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~-~G~~s~~~~~~---~~~r~~~~~~~~~  400 (407)
                           ++.+..+.+.+..... ...+..++|+++|++.|++.++++|+||+. +|+.+++.+.+   ..+.....+++++
T Consensus        75 ~~~~~~~~~~~i~~~~~~~~~~~~~v~~i~d~~~Ai~~Al~~a~~~D~Ili~GkG~e~~q~~~~~k~~~~D~~~~~~~l~  154 (160)
T d1e8ca2          75 DDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLG  154 (160)
T ss_dssp             CSCCBTSCHHHHHHHHHTTSSCGGGSEECSCHHHHHHHHHHHSCTTCEEEEESCTTCCEEEETTEEEECCHHHHHHHHHT
T ss_pred             ccCCccccchhhhhhhccccccccchhhhhhHHHHHHHHHHhCCCCCEEEEeecCchhheeECCeEecCCHHHHHHHHHH
Confidence                 4445566655544321 235667899999999999999999999986 57767654332   2356677777777


Q ss_pred             hhccc
Q 015421          401 FSKHD  405 (407)
Q Consensus       401 ~l~~~  405 (407)
                      .|+.+
T Consensus       155 ~~~~~  159 (160)
T d1e8ca2         155 VIARS  159 (160)
T ss_dssp             SCCSC
T ss_pred             HHhhc
Confidence            77543

>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=6.6e-13  Score=109.80  Aligned_cols=122  Identities=13%  Similarity=0.143  Sum_probs=80.0

Q ss_pred             CCCCceeEEee-ecCCEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEECCCCCCCCCCCCcchHhhhhhccCccEEE
Q 015421          254 TPPHRMQIVHR-DIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI  328 (407)
Q Consensus       254 ~~~gR~e~~~~-~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~  328 (407)
                      |++||||++.. ..+++.||||| ||||.++.++|+++    +++++++||++......   .....++...+..+|.++
T Consensus         1 Gv~rR~e~i~~~~~~~~~vidDy-AH~P~~i~a~l~a~r~~~~~~~ii~vf~p~~~~r~---~~~~~~~~~~~~~aD~vi   76 (151)
T d1j6ua2           1 GVHRRFSIAFHDPETNIYVIDDY-AHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRL---EREDGNFAKALQLADEVV   76 (151)
T ss_dssp             CCTTSSEEEEEETTTTEEEEEEC-CCSHHHHHHHHHHHHHHCSSSEEEEEECCBC-----------CHHHHHHTTSSEEE
T ss_pred             CCCCCeEEEEecCCCCEEEEEEC-CCCHHHHHHHHHHhhhhhcccceeeeeeccccchh---hHHHHHHHHHhhccccee
Confidence            68999999742 34678999995 99999999988865    45678899987654322   224556777777788888


Q ss_pred             Ee-----CCCh------HHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCccc
Q 015421          329 TF-----GYSG------VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE  384 (407)
Q Consensus       329 ~~-----g~~~------~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~  384 (407)
                      ++     ++++      ..+.+.++..+.  +..++++.+++.+ +++ .++||+||+. |+|++..
T Consensus        77 lt~~y~a~E~~~~~i~~~~i~~~i~~~~~--~~~~i~~~~~l~~-~l~-~~~~divl~~-GaGdi~~  138 (151)
T d1j6ua2          77 VTEVYDAFEEKKNGISGKMIWDSLKSLGK--EAYFVEKLPELEK-VIS-VSENTVFLFV-GAGDIIY  138 (151)
T ss_dssp             ECCCBC---------CHHHHHHHHHHTTC--CEEECCSGGGHHH-HCC-CCSSEEEEEE-CSSTHHH
T ss_pred             eecccccccccccccCHHHHHHHHHhcCC--CeEEcCCHHHHHH-HHh-CCCCCEEEEE-cCCCHHH
Confidence            86     2332      456666766543  4556667776544 343 6789998875 8886543

>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=99.29  E-value=3.1e-12  Score=105.58  Aligned_cols=126  Identities=14%  Similarity=0.240  Sum_probs=80.7

Q ss_pred             CCCCceeEEee---ecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCCCcchHhhhhhccCccE
Q 015421          254 TPPHRMQIVHR---DIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRC  326 (407)
Q Consensus       254 ~~~gR~e~~~~---~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (407)
                      |+.+|||+++.   ..+++.||||| ||+|.+++++|+.++    .++.++++........   +..+......+...+.
T Consensus         1 Gv~RRfe~~ge~~~~~~~~~VidDy-AHhPtaI~a~l~a~r~~~~~~~~~~~~~~~~~~r~---~~~~~~~~~~~~~~~~   76 (152)
T d1p3da2           1 GAGRRFDQLGEFIRPNGKVRLVDDY-GHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRT---RDLFDDFVQVLSQVDA   76 (152)
T ss_dssp             CBTTSSEEEEEEEETTEEEEEEEEC-CCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHHHH---HHTHHHHHHHHTTSSE
T ss_pred             CCCcceEEeceecccCCCcEEEEeC-CCCCHHHHHHHHHhhhhhhhhhhheeeeccccccc---cchhhhhHHHhhhhhh
Confidence            57899999952   24789999995 999999999988773    4556666654322111   1123334444433343


Q ss_pred             EEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccc
Q 015421          327 VITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF  385 (407)
Q Consensus       327 v~~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~  385 (407)
                      +++.           ..............+ ...+.+.++++++++.+.+.+++||+||++ |+|+++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~gDiil~m-GaGdi~~i  144 (152)
T d1p3da2          77 LIMLDVYAAGEAPIVGADSKSLCRSIRNLG-KVDPILVSDTSQLGDVLDQIIQDGDLILAQ-GAGSVSKI  144 (152)
T ss_dssp             EEEECCBCTTCCCCTTCSHHHHHHHHHHHT-SCCCEEESCGGGHHHHHHHHCCTTCEEEEE-CSSTHHHH
T ss_pred             hhhccccccccccccccchHHHHHHHHhcc-CccccccCCHHHHHHHHHHhCCCCCEEEEE-cCCCHHHH
Confidence            3332           111223333332222 235678899999999999999999999986 88887654

>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: Folylpolyglutamate synthetase, C-terminal domain
domain: Folylpolyglutamate synthetase, C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=99.15  E-value=4e-11  Score=95.99  Aligned_cols=113  Identities=14%  Similarity=0.055  Sum_probs=67.8

Q ss_pred             CCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc---CCCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEEe
Q 015421          255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITF  330 (407)
Q Consensus       255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~  330 (407)
                      ||||||++.  .++. +|.| +||||+|++.+++.+   ..+++++|+|...+++..       ++.+.+.+ .+.++++
T Consensus         1 WPGR~e~i~--~~~~-iilD-~AHN~~~~~~l~~~l~~~~~~~~~~v~g~~~dKd~~-------~~l~~l~~~~~~~~~~   69 (129)
T d2gc6a1           1 WPARLEKIS--DTPL-IVID-GAHNPDGINGLITALKQLFSQPITVIAGILADKDYA-------AMADRLTAAFSTVYLV   69 (129)
T ss_dssp             CTTSSEEEE--TTTT-EEEC-CCCSHHHHHHHHHHHHHHCSSCCEEEECCC----CC-------SSSSTTTTTCSEEEEC
T ss_pred             CCCceEEec--CCCc-EEEE-CCCCHHHHHHHhhccccccchhhhhhccccCCccHH-------HHHHhhhhhCCeEEEE
Confidence            799999994  4554 4555 699999999987766   357889999988876532       24444433 4455544


Q ss_pred             C--CC----hHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccCh
Q 015421          331 G--YS----GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF  388 (407)
Q Consensus       331 g--~~----~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~  388 (407)
                      .  ..    +....+.+.      .....++.++|++.+.+.. ++|.||++   |||+.+.+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ai~~a~~~~-~~~~vli~---GS~ylvg~v  123 (129)
T d2gc6a1          70 PVPGTPRALPEAGYEALH------EGRLKDSWQEALAASLNDV-PDQPIVIT---GSLYLASAV  123 (129)
T ss_dssp             CCTTSCCCC-----------------CBCSCHHHHHHHHHHHC-TTSCEEEE---SCHHHHHHH
T ss_pred             CCCCCcccChHHHHHHHH------hccccccHHHHHHHHHHhC-CCCcEEEE---ehHHHHHHH
Confidence            2  11    122222111      2345678999999999876 46778776   577765443

>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: Folylpolyglutamate synthetase, C-terminal domain
domain: Folylpolyglutamate synthetase, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.10  E-value=3.3e-10  Score=91.55  Aligned_cols=110  Identities=15%  Similarity=0.086  Sum_probs=76.9

Q ss_pred             CceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEEe-
Q 015421          257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITF-  330 (407)
Q Consensus       257 gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~-  330 (407)
                      ||||++.  .++..+|.| +||||+|++++++.+    +++++++|+|.+.+++       ...+...+.+ .+.++++ 
T Consensus         1 GR~e~i~--~~~~~iilD-~AHN~~a~~~l~~~l~~~~~~~~~~~i~g~~~dkd-------~~~~l~~l~~~~~~i~~~~   70 (137)
T d1o5za1           1 GRFEILE--KNGKMYILD-GAHNPHGAESLVRSLKLYFNGEPLSLVIGILDDKN-------REDILRKYTGIFERVIVTR   70 (137)
T ss_dssp             TSSEEEE--ETTEEEEEC-CCCSHHHHHHHHHHHHHHCTTCCEEEEECCCTTSC-------HHHHHGGGTTTCSEEEECC
T ss_pred             CCcEEEc--CCCCEEEEE-CCCCHHHHHHHHHHHHhhhccccceeeeccccccc-------HHHHHHHHHhhcceeeeee
Confidence            8999995  456677777 599999999987766    3578999999887654       3445555543 5666665 


Q ss_pred             -----CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccC
Q 015421          331 -----GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN  387 (407)
Q Consensus       331 -----g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~  387 (407)
                           +.++..+.+.+....  ..+..+++..+|++      .++|.|||+   |||+...+
T Consensus        71 ~~~~r~~~~~~l~~~~~~~~--~~~~~~~~~~~ai~------~~~~~ilv~---GSlylvge  121 (137)
T d1o5za1          71 VPSPRMKDMNSLVDMAKKFF--KNVEVIEDPLEAIE------STERATVVT---GSLFLVGY  121 (137)
T ss_dssp             CSSTTCCCHHHHHHHHHHHC--SCCEECSSHHHHHH------TCCSEEEEE---SCHHHHHH
T ss_pred             ccccccCCHHHHHHHHHHhC--CCcEEecCHHHHHh------CCCCCEEEE---CCHHHHHH
Confidence                 344567777766543  24566788888765      357888886   67876544

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00014  Score=52.63  Aligned_cols=28  Identities=4%  Similarity=-0.160  Sum_probs=26.2

Q ss_pred             eeeeeccccCcCcHHHHHHHhcCCceee
Q 015421            3 MLWLFLLEFQLKATGLACLLQSGKRVMS   30 (407)
Q Consensus         3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~   30 (407)
                      -+||++++++++|||+++|+++|+|+++
T Consensus        62 d~vV~SsAI~~~npel~~A~~~gIpv~~   89 (89)
T d1j6ua1          62 DLVIKTPAVRDDNPEIVRARMERVPIEN   89 (89)
T ss_dssp             SEEEECTTCCTTCHHHHHHHHTTCCEEE
T ss_pred             CEEEEecCcCCCCHHHHHHHHcCCCccC
Confidence            4799999999999999999999999975

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.01  Score=49.53  Aligned_cols=30  Identities=30%  Similarity=0.278  Sum_probs=27.2

Q ss_pred             cEEEEecCC---ChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVTGTN---GKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VTGTn---GKTTt~~~l~~iL~~~g~~~~   73 (407)
                      |.+-||||.   ||||++.-|+..|++.|+++.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl   34 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTA   34 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEE
Confidence            567888887   999999999999999999984

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.49  E-value=0.045  Score=47.86  Aligned_cols=31  Identities=32%  Similarity=0.536  Sum_probs=25.6

Q ss_pred             CCCcEEEEecCC--ChHhHHHHHHHHHHhcCCc
Q 015421           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIE   71 (407)
Q Consensus        41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~   71 (407)
                      ++-|+|||||+.  ||||++..|.++|+..+.+
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~   34 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVK   34 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCC
Confidence            467899999985  7999999999999987643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=92.13  E-value=0.12  Score=46.17  Aligned_cols=33  Identities=36%  Similarity=0.444  Sum_probs=29.4

Q ss_pred             CCCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      .+..+|+|||+  .||||...-|...+...|.++.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~va   86 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA   86 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCcee
Confidence            46789999999  8999999999999999998864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.31  E-value=0.11  Score=41.00  Aligned_cols=35  Identities=17%  Similarity=0.123  Sum_probs=29.6

Q ss_pred             CcEEEEecCC--ChHhHHHHHHHHHHhcCCceeeccc
Q 015421           43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN   77 (407)
Q Consensus        43 ~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~~~g~   77 (407)
                      +++|+|||..  ||||+..-|..-|+..|+++.+.-+
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~   37 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH   37 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEe
Confidence            5789999975  7999999999999999999865433

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.73  E-value=0.12  Score=45.08  Aligned_cols=31  Identities=26%  Similarity=0.339  Sum_probs=27.8

Q ss_pred             CcEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           43 IKILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        43 ~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +++|+|.  |-.|||||+.-|+..|.+.|+++.
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVL   34 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVM   34 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence            5678887  789999999999999999999884

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=90.59  E-value=0.099  Score=41.84  Aligned_cols=30  Identities=47%  Similarity=0.608  Sum_probs=26.5

Q ss_pred             CcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421           43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~   72 (407)
                      +++|.|+|.  .||||++..|+..|...|+.+
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~   32 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINN   32 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCE
Confidence            578889987  689999999999999988876

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=90.11  E-value=0.15  Score=39.80  Aligned_cols=33  Identities=27%  Similarity=0.248  Sum_probs=28.7

Q ss_pred             CcEEEEecCC--ChHhHHHHHHHHHHhcCCceeec
Q 015421           43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG   75 (407)
Q Consensus        43 ~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~~~   75 (407)
                      +|+|+|||..  ||||...-|..-|...|+++...
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~   36 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI   36 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence            5899999985  79999999999999999988543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.40  E-value=0.16  Score=43.52  Aligned_cols=31  Identities=26%  Similarity=0.352  Sum_probs=26.7

Q ss_pred             CcEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           43 IKILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        43 ~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +++|+|+  |=.||||++.-|+..|.+.|+++.
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVl   33 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIM   33 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEE
Confidence            4678887  567999999999999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.34  E-value=0.43  Score=42.22  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=28.4

Q ss_pred             CCCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      .+..+|+|||+  .||||+..-|...+...|.+++
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~va   83 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVA   83 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCcee
Confidence            45789999997  6899999999998998998874

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.75  E-value=0.24  Score=41.05  Aligned_cols=31  Identities=26%  Similarity=0.505  Sum_probs=27.0

Q ss_pred             CcEEEEec---CCChHhHHHHHHHHHHhcCCcee
Q 015421           43 IKILAVTG---TNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        43 ~~~I~VTG---TnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      +++|+|++   -.||||++.-|+..|.+.|.++.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~Vl   34 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVT   34 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEE
Confidence            47899984   48999999999999999998874

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.28  E-value=0.33  Score=41.53  Aligned_cols=32  Identities=19%  Similarity=0.394  Sum_probs=26.2

Q ss_pred             CCcEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        42 ~~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ..++|.++  |=.|||||+..|+..|.+.|+++.
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVl   52 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVH   52 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            45666666  667999999999999999998773

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=85.38  E-value=0.32  Score=38.32  Aligned_cols=29  Identities=28%  Similarity=0.404  Sum_probs=25.2

Q ss_pred             cEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421           44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~   72 (407)
                      ++|.|+|.  .||||++..|+.-|...+..+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~   32 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY   32 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence            67888886  589999999999999888765

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=84.66  E-value=0.48  Score=41.54  Aligned_cols=28  Identities=29%  Similarity=0.458  Sum_probs=23.7

Q ss_pred             CCCcEEEEecC--CChHhHHHHHHHHHHhc
Q 015421           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHL   68 (407)
Q Consensus        41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~   68 (407)
                      +..-+|||+|+  .||||++..|..+|+..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~  107 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRW  107 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhh
Confidence            34569999996  58999999999999864

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.64  E-value=0.48  Score=40.69  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=27.4

Q ss_pred             CCcEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421           42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        42 ~~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ..++|.++  |-.||||++..++..|.+.|+++.
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVL   40 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVL   40 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEE
Confidence            45677777  578999999999999999999884

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.60  E-value=0.45  Score=37.91  Aligned_cols=31  Identities=29%  Similarity=0.482  Sum_probs=26.3

Q ss_pred             CCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA   72 (407)
Q Consensus        42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~   72 (407)
                      ..-+|||+|-  .||||++..|...|...+..+
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~   53 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISV   53 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhccccccc
Confidence            3448999975  589999999999999988765

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.03  E-value=0.58  Score=38.58  Aligned_cols=30  Identities=23%  Similarity=0.427  Sum_probs=25.8

Q ss_pred             cEEEEec---CCChHhHHHHHHHHHHhcCCcee
Q 015421           44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAF   73 (407)
Q Consensus        44 ~~I~VTG---TnGKTTt~~~l~~iL~~~g~~~~   73 (407)
                      ++|+|+|   =.||||++.-|+..|...|.++.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~Vl   35 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVL   35 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEE
Confidence            6788884   58999999999999999998773

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=82.66  E-value=0.48  Score=38.78  Aligned_cols=28  Identities=43%  Similarity=0.672  Sum_probs=21.7

Q ss_pred             Cc-EEEEecC--CChHhHHHHHHHHHHhcCCceee
Q 015421           43 IK-ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV   74 (407)
Q Consensus        43 ~~-~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~   74 (407)
                      ++ +|||||.  .||||++.+    |++.|+.+..
T Consensus         2 mk~iIgitG~igSGKStv~~~----l~~~G~~vid   32 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANA----FADLGINVID   32 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHH----HHHTTCEEEE
T ss_pred             CCEEEEEECCCcCCHHHHHHH----HHHCCCcEEE
Confidence            45 9999997  689998875    5778887643