Citrus Sinensis ID: 015428

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
MANLGNDNLEEEVMEETTEEENADYVLDDFDNLPVNTRFLGSTSDAHPWFAKYANFPGLVKLKKNIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAHLQTTHFKDISGLICQSPGSDPSFISFNQDAYGIPSPSFNFFPQLVNIRTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSGAILVFDLKDEQYGILPLPARSGPYGALTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILLPNKVIAYHVKAQKMQVVSETGTEGFQNCLPYINSLVAVAK
cccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHcHHHHHHHccHHHHHHHHcccccccEEEEEcccccccEEEccccccccccccccccccccEEEEccccEEEccEEEccccEEEEEEEcccccEEEccccccccccccEEEEEEEccccccccEEEEEEEEEEccccccEEEEEEEEcccccEEEccccccccccccccccEEEEccEEEEEEccccEEEEEccccEEEEEcccccccccccEEEEccEEEEEEccccccEEEEEEEcccccEEEEEEEEEcccccccccccEEEEEEcccEEEEEEccEEEEEEccccEEEEEEccccccEEEEEEEEEccccccc
cccccccccHHHHHHccccccccHHHHHHHccccccccccccccccccHHHcHHHccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccccEEEEccccEEEEEEcccccccccEEEEcccccEEEEcccccccccccEEEEEEEcccccccccEEEEEEEEEEccccccEEEEEEEEcccccEEEEEccccccccEccccccEEEEEEEEEEEcccEEEEEEccccEEEEEEccccccccEEEEEEccEEEEEEEcccccEEEEEEEEEcccEEEEEEcccccEcccccccccEEEEEcccEEEEEEccEEEEEEccccEEEEEEEccccccccEEEccccEEEccc
manlgndnleeevmeetteeenadyvlddfdnlpvntrflgstsdahpwfakyanfpglvklkkniglsdvtmehvlpflpakslcRFKAVSKEWNRWISSPFLAHLQTTHFkdisglicqspgsdpsfisfnqdaygipspsfnffpqlvNIRTTCNGLVCCQSVFEVGNFFYYICnpvtkewhvlpqpkffhgpeTAVALVfepsalgfsahyevvcavpvdqndvsIIFFEIYSsrsrswrttdticsepdvLKLSINGFYMKGFVYWTSLSGAILVfdlkdeqygilplparsgpygalTQMHGELcymlpqiqdgecligvygnldmslkcvipvehevlgetfsdcrvltcvnsdiliilLPNKVIAYHVKAQKMQVVSetgtegfqnclPYINSLVAVAK
manlgndnleeEVMEETTEEENADYVLDDFDNLPVNTRFLGSTSDAHPWFAKYANFPGLVKLKKNIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAHLQTTHFKDISGLICQSPGSDPSFISFNQDAYGIPSPSFNFFPQLVNIRTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEiyssrsrswrttdticsepdvLKLSINGFYMKGFVYWTSLSGAILVFDLKDEQYGILPLPARSGPYGALTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILLPNKVIAYHVKAQKMQVVSETgtegfqnclpYINSLVAVAK
MANLGNDNLeeevmeetteeeNADYVLDDFDNLPVNTRFLGSTSDAHPWFAKYANFPGLVKLKKNIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAHLQTTHFKDISGLICQSPGSDPSFISFNQDAYGIPSPSFNFFPQLVNIRTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYssrsrswrttdtICSEPDVLKLSINGFYMKGFVYWTSLSGAILVFDLKDEQYGILPLPARSGPYGALTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILLPNKVIAYHVKAQKMQVVSETGTEGFQNCLPYINSLVAVAK
***********************DYVLDDFDNLPVNTRFLGSTSDAHPWFAKYANFPGLVKLKKNIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAHLQTTHFKDISGLICQSPGSDPSFISFNQDAYGIPSPSFNFFPQLVNIRTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSGAILVFDLKDEQYGILPLPARSGPYGALTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILLPNKVIAYHVKAQKMQVVSETGTEGFQNCLPYINSLVAV**
***********EVME*TT*****DYVLDDFDN**************************************VTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAHLQTTHFKDISGLICQSPGSDPSFISFNQDAYGIPSPSFNFFPQLVNIRTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSGAILVFDLKDEQYGILPLPARSGPYGALTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILLPNKVIAYHVKAQKMQVVSETGTEGFQNCLPYINSLVAVA*
MANLGNDNL************NADYVLDDFDNLPVNTRFLGSTSDAHPWFAKYANFPGLVKLKKNIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAHLQTTHFKDISGLICQSPGSDPSFISFNQDAYGIPSPSFNFFPQLVNIRTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSGAILVFDLKDEQYGILPLPARSGPYGALTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILLPNKVIAYHVKAQKMQVVSETGTEGFQNCLPYINSLVAVAK
***LGNDNLEEEVMEETTEEENADYVLDDFDNLPVNTRFLGSTSDAHPWFAKYANFPGLVKLKKNIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAHLQTTHFKDISGLICQSPGSDPSFISFNQDAYGIPSPSFNFFPQLVNIRTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSGAILVFDLKDEQYGILPLPARSGPYGALTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILLPNKVIAYHVKAQKMQVVSETGTEGFQNCLPYINSLVAVA*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANLGNDNLEEEVMEETTEEENADYVLDDFDNLPVNTRFLGSTSDAHPWFAKYANFPGLVKLKKNIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAHLQTTHFKDISGLICQSPGSDPSFISFNQDAYGIPSPSFNFFPQLVNIRTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSGAILVFDLKDEQYGILPLPARSGPYGALTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILLPNKVIAYHVKAQKMQVVSETGTEGFQNCLPYINSLVAVAK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query407 2.2.26 [Sep-21-2011]
Q9FLS0420 F-box protein At5g07610 O yes no 0.567 0.55 0.296 3e-17
Q94A64418 F-box protein At5g03970 O no no 0.776 0.755 0.248 8e-15
Q9FGY4359 F-box protein At5g49610 O no no 0.525 0.596 0.291 3e-14
Q9LMR4410 Putative F-box/kelch-repe no no 0.562 0.558 0.258 7e-10
Q9C800441 Putative F-box protein At no no 0.523 0.482 0.267 2e-08
Q9LU90414 F-box protein At3g26010 O no no 0.805 0.792 0.247 8e-08
Q9M0Q9383 Putative F-box protein At no no 0.550 0.584 0.245 8e-08
Q9FK54379 F-box protein At5g18160 O no no 0.542 0.583 0.277 2e-07
Q9LUP4396 Putative F-box/kelch-repe no no 0.542 0.558 0.25 4e-07
Q9LUP5388 F-box/kelch-repeat protei no no 0.545 0.572 0.260 5e-07
>sp|Q9FLS0|FB253_ARATH F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1 Back     alignment and function desciption
 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 114/266 (42%), Gaps = 35/266 (13%)

Query: 57  PGLVKLKKNIGLS----------DVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAH 106
           P   + ++N G S          D  +  +L FLP K+L RFK VSK W   I++P  ++
Sbjct: 12  PRSARSRRNGGFSSSSATIVADIDDVLIQILSFLPIKTLLRFKRVSKRWLSLITNPVFSN 71

Query: 107 --LQTTHFKDISGLICQSPGS-DPSFISFNQDAYGIPSPS-----FNFFPQLVNIRTTCN 158
             +++ H   ISG    SP     SF+S + DA      S     F      + I  + N
Sbjct: 72  RVIKSNHPLPISGFFLHSPREIKYSFVSLDDDATNQRISSSLPLWFTDHQTDMIIMQSTN 131

Query: 159 GLVCCQSVFEVGNFF---YYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHY 215
           GL+ C+      N F   YY+ NP TK++ +L Q         A++L F+PS    S HY
Sbjct: 132 GLLLCKCSCASSNHFNTNYYVYNPTTKQYTLLHQI----AGHIALSLAFDPSR---SPHY 184

Query: 216 EVVCAVPVDQN------DVSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFV 269
           +V C      N      D  +   E+YSS    WR    + + P          +  G V
Sbjct: 185 KVFCLRGRSNNSFSSASDSELYHIEVYSSNEGLWRRVVPVPTSPSTFIEFSYSVFWNGAV 244

Query: 270 YWTSLSGA-ILVFDLKDEQYGILPLP 294
            W   S    L FD+  ++  ILPLP
Sbjct: 245 NWYGFSSRDCLSFDINTQEIKILPLP 270

Arabidopsis thaliana (taxid: 3702)
>sp|Q94A64|FB251_ARATH F-box protein At5g03970 OS=Arabidopsis thaliana GN=At5g03970 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1 Back     alignment and function description
>sp|Q9LMR4|FBK4_ARATH Putative F-box/kelch-repeat protein At1g15680 OS=Arabidopsis thaliana GN=At1g15680 PE=4 SV=1 Back     alignment and function description
>sp|Q9C800|FB34_ARATH Putative F-box protein At1g33530 OS=Arabidopsis thaliana GN=At1g33530 PE=4 SV=1 Back     alignment and function description
>sp|Q9LU90|FB188_ARATH F-box protein At3g26010 OS=Arabidopsis thaliana GN=At3g26010 PE=2 SV=1 Back     alignment and function description
>sp|Q9M0Q9|FB223_ARATH Putative F-box protein At4g09190 OS=Arabidopsis thaliana GN=At4g09190 PE=4 SV=1 Back     alignment and function description
>sp|Q9FK54|FB260_ARATH F-box protein At5g18160 OS=Arabidopsis thaliana GN=At5g18160 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUP4|FBK60_ARATH Putative F-box/kelch-repeat protein At3g17540 OS=Arabidopsis thaliana GN=At3g17540 PE=4 SV=1 Back     alignment and function description
>sp|Q9LUP5|FBK59_ARATH F-box/kelch-repeat protein At3g17530 OS=Arabidopsis thaliana GN=At3g17530 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
224094749405 predicted protein [Populus trichocarpa] 0.855 0.859 0.564 1e-111
224134342342 predicted protein [Populus trichocarpa] 0.813 0.967 0.550 1e-103
255561136339 conserved hypothetical protein [Ricinus 0.764 0.917 0.479 2e-84
255561138356 conserved hypothetical protein [Ricinus 0.805 0.921 0.409 7e-62
338762842360 hypothetical protein 111O18.16 [Coffea c 0.840 0.95 0.355 2e-54
297735175412 unnamed protein product [Vitis vinifera] 0.805 0.796 0.377 1e-52
225430790357 PREDICTED: putative F-box protein At3g23 0.805 0.918 0.377 1e-52
147846660399 hypothetical protein VITISV_027510 [Viti 0.805 0.822 0.377 2e-52
224094747360 predicted protein [Populus trichocarpa] 0.815 0.922 0.380 3e-52
9858770358 BAC19.2 [Solanum lycopersicum] 0.810 0.921 0.327 4e-47
>gi|224094749|ref|XP_002310220.1| predicted protein [Populus trichocarpa] gi|222853123|gb|EEE90670.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/354 (56%), Positives = 252/354 (71%), Gaps = 6/354 (1%)

Query: 54  ANFPGLVKLKKNIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAHLQTTHFK 113
           A FPG VK +++I + DV  ++ L FLPAKS+CRFK VSKEW +WI SPF +H QT HFK
Sbjct: 47  AKFPGHVK-QEDIKIEDVVRQYALCFLPAKSICRFKTVSKEWLKWIDSPFFSHKQTNHFK 105

Query: 114 DISGLICQSPGSDPSFISFNQDAYGIPSPSFNFFPQLVNIRTTCNGLVCCQSVFEVGNFF 173
            +SGL CQ PG  PSFISFN  AYG+ SP+  F P+ +++RT+CNGL+ CQS   +G+  
Sbjct: 106 HVSGLFCQFPGESPSFISFNPVAYGVSSPTLRFLPEPIDVRTSCNGLLGCQS--RLGDNA 163

Query: 174 YYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFF 233
           YYICNPVTKEW V+P+P  +HGPETA+AL FEP AL F A YE+VCAV +   D + + F
Sbjct: 164 YYICNPVTKEWRVVPKPTLYHGPETAIALAFEPDALKFGAQYELVCAVTLP--DRAALLF 221

Query: 234 EIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSGAILVFDLKDEQYGILPL 293
           EIYSSR+ SWR    +C E D L L+ +GFY++GFV+W + SGA+L FD K+E+YGIL L
Sbjct: 222 EIYSSRTNSWRVCTAMCLELDALPLNGDGFYIRGFVFWETQSGAVLGFDCKEEEYGILSL 281

Query: 294 PARSGPYGALTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHEVLGETF-SDC 352
           P  S P GALT++ GELCY+LP  +D    I VYGN+DMSL+ VIP+  EVLG      C
Sbjct: 282 PPSSNPTGALTELRGELCYLLPHKEDDAWSIEVYGNMDMSLRRVIPLHSEVLGHLVDGQC 341

Query: 353 RVLTCVNSDILIILLPNKVIAYHVKAQKMQVVSETGTEGFQNCLPYINSLVAVA 406
           R L  VN D +II L  KVIAYHV+A KM+ VS+  T+GF   LPY+NSL  V 
Sbjct: 342 RALAFVNDDTMIIALGMKVIAYHVRAHKMERVSDARTDGFVKYLPYVNSLAPVG 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224134342|ref|XP_002327814.1| predicted protein [Populus trichocarpa] gi|222836899|gb|EEE75292.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255561136|ref|XP_002521580.1| conserved hypothetical protein [Ricinus communis] gi|223539258|gb|EEF40851.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255561138|ref|XP_002521581.1| conserved hypothetical protein [Ricinus communis] gi|223539259|gb|EEF40852.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|338762842|gb|AEI98629.1| hypothetical protein 111O18.16 [Coffea canephora] Back     alignment and taxonomy information
>gi|297735175|emb|CBI17537.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225430790|ref|XP_002270563.1| PREDICTED: putative F-box protein At3g23950 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147846660|emb|CAN82744.1| hypothetical protein VITISV_027510 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224094747|ref|XP_002310219.1| predicted protein [Populus trichocarpa] gi|222853122|gb|EEE90669.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|9858770|gb|AAG01117.1|AF273333_2 BAC19.2 [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
TAIR|locus:2160334420 AT5G07610 "AT5G07610" [Arabido 0.533 0.516 0.307 1.9e-15
TAIR|locus:2157834359 AT5G49610 "AT5G49610" [Arabido 0.660 0.749 0.278 7.8e-12
TAIR|locus:2150665418 AT5G03970 "AT5G03970" [Arabido 0.530 0.516 0.273 1.9e-11
TAIR|locus:2092160414 AT3G26010 "AT3G26010" [Arabido 0.800 0.787 0.240 2.2e-09
TAIR|locus:2006902441 AT1G33530 "AT1G33530" [Arabido 0.523 0.482 0.259 4.3e-07
UNIPROTKB|Q6AT88309 OSJNBa0069I13.11 "Os05g0139300 0.390 0.514 0.297 4.4e-07
TAIR|locus:2036124410 AT1G15680 "AT1G15680" [Arabido 0.530 0.526 0.268 2.3e-06
TAIR|locus:2172304379 AT5G18160 "AT5G18160" [Arabido 0.542 0.583 0.272 1.2e-05
TAIR|locus:2141548383 AT4G09190 "AT4G09190" [Arabido 0.587 0.624 0.236 2.6e-05
TAIR|locus:2059909295 AT2G16810 "AT2G16810" [Arabido 0.535 0.738 0.258 5.7e-05
TAIR|locus:2160334 AT5G07610 "AT5G07610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 218 (81.8 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 76/247 (30%), Positives = 117/247 (47%)

Query:    68 LSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAH--LQTTHFKDISGLICQSPGS 125
             + DV ++ +L FLP K+L RFK VSK W   I++P  ++  +++ H   ISG    SP  
Sbjct:    34 IDDVLIQ-ILSFLPIKTLLRFKRVSKRWLSLITNPVFSNRVIKSNHPLPISGFFLHSPRE 92

Query:   126 DP-SFISFNQDAYG--IPSPSFNFFPQ----LVNIRTTCNGLVCCQSVFEVGNFF---YY 175
                SF+S + DA    I S    +F      ++ +++T NGL+ C+      N F   YY
Sbjct:    93 IKYSFVSLDDDATNQRISSSLPLWFTDHQTDMIIMQST-NGLLLCKCSCASSNHFNTNYY 151

Query:   176 ICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQN------DVS 229
             + NP TK++ +L Q     G   A++L F+PS    S HY+V C      N      D  
Sbjct:   152 VYNPTTKQYTLLHQ---IAG-HIALSLAFDPSR---SPHYKVFCLRGRSNNSFSSASDSE 204

Query:   230 IIFFEIYXXXXXXXXXXXXICSEPDV-LKLSINGFYMKGFVYWTSLSGA-ILVFDLKDEQ 287
             +   E+Y            + + P   ++ S + F+  G V W   S    L FD+  ++
Sbjct:   205 LYHIEVYSSNEGLWRRVVPVPTSPSTFIEFSYSVFW-NGAVNWYGFSSRDCLSFDINTQE 263

Query:   288 YGILPLP 294
               ILPLP
Sbjct:   264 IKILPLP 270
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2157834 AT5G49610 "AT5G49610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150665 AT5G03970 "AT5G03970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092160 AT3G26010 "AT3G26010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006902 AT1G33530 "AT1G33530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6AT88 OSJNBa0069I13.11 "Os05g0139300 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2036124 AT1G15680 "AT1G15680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172304 AT5G18160 "AT5G18160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141548 AT4G09190 "AT4G09190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059909 AT2G16810 "AT2G16810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00071074
hypothetical protein (405 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_I1996
f-box family protein (314 aa)
      • 0.702
RAV3
AP2 domain-containing transcription factor (369 aa)
      • 0.687
gw1.VII.473.1
hypothetical protein (312 aa)
      • 0.683
gw1.VII.471.1
hypothetical protein (300 aa)
      • 0.683
gw1.VII.1169.1
hypothetical protein (314 aa)
      • 0.683
gw1.5481.2.1
hypothetical protein (301 aa)
      • 0.683
gw1.369.14.1
hypothetical protein (329 aa)
      • 0.683
grail3.0369000101
hypothetical protein (330 aa)
      • 0.683
DREB19
SubName- Full=Putative uncharacterized protein; (325 aa)
      • 0.510
DREB26
AP2/ERF domain-containing transcription factor (196 aa)
      • 0.510

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 9e-07
pfam1293747 pfam12937, F-box-like, F-box-like 0.004
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 156 TCNGLVCCQSVFEVGNFFYYICNPVTKE--WHVLPQPKFFHGPETAVALVFEPSALGFSA 213
            C+GL+C      +      + NP T +  W   P+ +  +       L ++P       
Sbjct: 3   PCDGLICFSYGKRL-----VVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPI----EK 53

Query: 214 HYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTS 273
            Y+V+C      N       ++Y+  S SWRT +        LK    G  + G +Y+ +
Sbjct: 54  QYKVLCFSDRSGNRNQSEH-QVYTLGSNSWRTIE-CSPPHHPLKS--RGVCINGVLYYLA 109

Query: 274 LSGA------ILVFDLKDEQYGI-LPLP 294
            +        I+ FD+  E++   +PLP
Sbjct: 110 YTLKTNPDYFIVSFDVSSERFKEFIPLP 137

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 407
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 99.97
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.4
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.37
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.32
PHA02713557 hypothetical protein; Provisional 99.06
PHA03098534 kelch-like protein; Provisional 98.84
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.84
PHA02713557 hypothetical protein; Provisional 98.78
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.76
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.74
PHA02790480 Kelch-like protein; Provisional 98.71
PLN02153341 epithiospecifier protein 98.67
PHA02790480 Kelch-like protein; Provisional 98.58
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.51
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.51
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.48
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.44
PHA03098534 kelch-like protein; Provisional 98.43
PLN02193470 nitrile-specifier protein 98.41
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.31
PLN02193470 nitrile-specifier protein 98.3
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.21
PLN02153 341 epithiospecifier protein 98.1
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 97.94
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 97.82
KOG4693392 consensus Uncharacterized conserved protein, conta 97.62
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.4
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.45
KOG1230 521 consensus Protein containing repeated kelch motifs 95.86
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 95.64
KOG4693392 consensus Uncharacterized conserved protein, conta 95.57
KOG0281499 consensus Beta-TrCP (transducin repeats containing 95.43
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 93.75
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 93.48
PF07893 342 DUF1668: Protein of unknown function (DUF1668); In 93.48
KOG2997366 consensus F-box protein FBX9 [General function pre 92.96
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 92.83
PF1396450 Kelch_6: Kelch motif 92.76
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 91.79
KOG1230 521 consensus Protein containing repeated kelch motifs 91.2
PF1396450 Kelch_6: Kelch motif 90.75
smart0061247 Kelch Kelch domain. 90.64
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 89.79
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 89.22
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 88.27
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 87.1
COG3055381 Uncharacterized protein conserved in bacteria [Fun 85.97
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 85.07
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 84.91
KOG0316307 consensus Conserved WD40 repeat-containing protein 83.48
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 82.65
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 81.33
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 81.19
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 80.88
KOG4341483 consensus F-box protein containing LRR [General fu 80.47
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=99.97  E-value=1.8e-30  Score=236.51  Aligned_cols=211  Identities=21%  Similarity=0.348  Sum_probs=153.7

Q ss_pred             EeecCceEEEeeecccCCeEEEEEcCcccceeecCCCCcCC--CCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceE
Q 015428          154 RTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFH--GPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSII  231 (407)
Q Consensus       154 ~~s~~GLll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~--~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~  231 (407)
                      ++|||||||+...     ..++||||+||+++.||+++...  ......++|||+.    +++||||++..... +....
T Consensus         1 ~~sCnGLlc~~~~-----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~----~~~YKVv~~~~~~~-~~~~~   70 (230)
T TIGR01640         1 VVPCDGLICFSYG-----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPI----EKQYKVLCFSDRSG-NRNQS   70 (230)
T ss_pred             CcccceEEEEecC-----CcEEEECCCCCCEEecCCCCCcccccccceEEEeeccc----CCcEEEEEEEeecC-CCCCc
Confidence            4799999998642     67999999999999999875421  1112578999997    89999999986431 22456


Q ss_pred             EEEEEeCCCCcccccCCCCCCCcccccccceEEECCEEEEEecCC------cEEEEEcCCCeEe-eEeCCCCCC---CCc
Q 015428          232 FFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSG------AILVFDLKDEQYG-ILPLPARSG---PYG  301 (407)
Q Consensus       232 ~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~~~------~Il~fD~~~e~~~-~i~lP~~~~---~~~  301 (407)
                      .++||++++++||.+...+ +. .. ....+|++||.+||++...      .|++||+.+|+|+ .+++|....   ...
T Consensus        71 ~~~Vys~~~~~Wr~~~~~~-~~-~~-~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~  147 (230)
T TIGR01640        71 EHQVYTLGSNSWRTIECSP-PH-HP-LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYL  147 (230)
T ss_pred             cEEEEEeCCCCccccccCC-CC-cc-ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccce
Confidence            8999999999999987432 11 11 2234999999999997521      6999999999999 599987543   235


Q ss_pred             cEEEecCeEEEEeeeC---CCceEEEEEcCCccceeeEeeeeecccccCcCCcceEEEe-ecCCEEEEecC--CE-EEEE
Q 015428          302 ALTQMHGELCYMLPQI---QDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTC-VNSDILIILLP--NK-VIAY  374 (407)
Q Consensus       302 ~l~~~~G~L~~v~~~~---~~~~w~l~~~~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~-~~g~~lll~~~--~~-l~~y  374 (407)
                      .|++++|+||++....   ..++|+|++++..+|+...+|.++. ..+ ......++.+ .+|++++....  .. +++|
T Consensus       148 ~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~-~~~-~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y  225 (230)
T TIGR01640       148 SLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPP-LPD-LVDDNFLSGFTDKGEIVLCCEDENPFYIFYY  225 (230)
T ss_pred             EEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcc-hhh-hhhheeEeEEeeCCEEEEEeCCCCceEEEEE
Confidence            7999999999998753   2689999988887888766666421 111 1112346656 45666665543  34 9999


Q ss_pred             ECCCC
Q 015428          375 HVKAQ  379 (407)
Q Consensus       375 d~~t~  379 (407)
                      |++++
T Consensus       226 ~~~~~  230 (230)
T TIGR01640       226 NVGEN  230 (230)
T ss_pred             eccCC
Confidence            99875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 9e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.2 bits (111), Expect = 8e-06
 Identities = 62/474 (13%), Positives = 130/474 (27%), Gaps = 142/474 (29%)

Query: 11  EEVMEETTEEENADYVLDDFDNLPVNT--RFLGSTSDA-HPW------------------ 49
           + ++           +     +       +F+       + +                  
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 50  --------------FAKYANFP----------GLVKLKKNIGLSDVTM----EHVLPFLP 81
                         FAKY N             L++L+    +    +    +  +    
Sbjct: 112 YIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV---- 166

Query: 82  AKSLCRFKAVSKEWNR---WIS-----SP--FLAHLQTTHFKDISGLICQSPGSDPSFIS 131
           A  +C    V  + +    W++     SP   L  LQ   ++            DP++ S
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-----------IDPNWTS 215

Query: 132 FNQDAYGIPSPSFNFFPQLVNI---RTTCNGL-----VCCQSVFEVGNFFYYICNPV--T 181
            +  +  I     +   +L  +   +   N L     V     +     F   C  +  T
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLTT 272

Query: 182 KEWHV---LPQPKFFHGPETAVALVFEPS-ALGFSAHY---------EVVCAV-PVDQND 227
           +   V   L      H      ++   P         Y           V    P     
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--- 329

Query: 228 VSII--FFEIYSSRSRSWRTTDTICSE-PDVLKLSINGF---YMKGFVYWTSLSGAILVF 281
           +SII        +   +W+  +  C +   +++ S+N       +    +  LS    VF
Sbjct: 330 LSIIAESIRDGLATWDNWKHVN--CDKLTTIIESSLNVLEPAEYRK--MFDRLS----VF 381

Query: 282 DLKDEQYGILPLPAR-------SGPYGALTQMHGELC-YMLPQIQDGECLIGVYGNLDMS 333
                      +P               +  +  +L  Y L + Q  E  I +   + + 
Sbjct: 382 P-PS-----AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLE 434

Query: 334 LKCVIPVE---HEVLGETFSDCRVLTCVNSDILIILLPN---KVIAYHVKAQKM 381
           LK  +  E   H  + + ++  +     + D++   L       I +H+K  + 
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFD--SDDLIPPYLDQYFYSHIGHHLKNIEH 486
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.17
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.15
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.13
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.02
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.98
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.98
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.95
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.94
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 98.87
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.82
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.81
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.79
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.75
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.73
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.59
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.46
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.44
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.26
3v7d_B 464 Cell division control protein 4; WD 40 domain, pho 98.26
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.13
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.05
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.72
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.66
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.46
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.37
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.95
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 95.82
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 92.06
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 86.43
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 85.52
3v9f_A 781 Two-component system sensor histidine kinase/RESP 83.59
2bkl_A 695 Prolyl endopeptidase; mechanistic study, celiac sp 83.25
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 82.22
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 81.87
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 81.79
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 81.52
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
Probab=99.17  E-value=2.4e-08  Score=93.67  Aligned_cols=209  Identities=11%  Similarity=0.130  Sum_probs=126.9

Q ss_pred             eEEeecCceEEEeeecc--------cCCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEec
Q 015428          152 NIRTTCNGLVCCQSVFE--------VGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPV  223 (407)
Q Consensus       152 ~i~~s~~GLll~~~~~~--------~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~  223 (407)
                      ..+...+|.|++.++..        .....++++||.|++|..+|+.+..+.. . .+..++       +  +|+.++..
T Consensus        50 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~-~~~~~~-------~--~iyv~GG~  118 (318)
T 2woz_A           50 SSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-F-GLGEVD-------D--KIYVVAGK  118 (318)
T ss_dssp             EEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-C-EEEEET-------T--EEEEEEEE
T ss_pred             eEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-c-ceEEEC-------C--EEEEEcCc
Confidence            34456677777665421        0112388999999999999987654322 1 122222       1  55666554


Q ss_pred             cC-CCcceEEEEEEeCCCCcccccCCCCCCCcccccccceEEECCEEEEEec-------CCcEEEEEcCCCeEeeEe-CC
Q 015428          224 DQ-NDVSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSL-------SGAILVFDLKDEQYGILP-LP  294 (407)
Q Consensus       224 ~~-~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~-------~~~Il~fD~~~e~~~~i~-lP  294 (407)
                      .. .......+++||+.+++|+.+...+.+.    .....+.++|.+|.+..       ...+..||+.+.+|+.++ +|
T Consensus       119 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p  194 (318)
T 2woz_A          119 DLQTEASLDSVLCYDPVAAKWSEVKNLPIKV----YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK  194 (318)
T ss_dssp             BTTTCCEEEEEEEEETTTTEEEEECCCSSCE----ESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS
T ss_pred             cCCCCcccceEEEEeCCCCCEeECCCCCCcc----cccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC
Confidence            31 2334567999999999999987543321    23457779999999874       246999999999999985 33


Q ss_pred             CCCCCCccEEEecCeEEEEeeeCCCc-eEEEEEc--CCccceeeEeeeeecccccCcCCcceEEEeecCCEEEEec----
Q 015428          295 ARSGPYGALTQMHGELCYMLPQIQDG-ECLIGVY--GNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILL----  367 (407)
Q Consensus       295 ~~~~~~~~l~~~~G~L~~v~~~~~~~-~w~l~~~--~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~~----  367 (407)
                      .. ......+..+|+|+++....... .-.++.+  ..+.|....  .++.   .+   ....++..++.++++..    
T Consensus       195 ~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~p~---~r---~~~~~~~~~~~i~v~GG~~~~  265 (318)
T 2woz_A          195 TP-RSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT--EFPQ---ER---SSISLVSLAGSLYAIGGFAMI  265 (318)
T ss_dssp             SC-CBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECC--CCSS---CC---BSCEEEEETTEEEEECCBCCB
T ss_pred             CC-cccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECC--CCCC---cc---cceEEEEECCEEEEECCeecc
Confidence            33 22345677899999997653221 1223333  345564422  2221   11   11122234444444411    


Q ss_pred             -----------CCEEEEEECCCCeEEEe
Q 015428          368 -----------PNKVIAYHVKAQKMQVV  384 (407)
Q Consensus       368 -----------~~~l~~yd~~t~~~~~l  384 (407)
                                 ...+..||+++++|+++
T Consensus       266 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          266 QLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             C----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             CCCCceeccceeeeEEEEeCCCCEehhh
Confidence                       24689999999999999
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 407
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-06
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 9e-06
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 9e-04
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 10/37 (27%), Positives = 13/37 (35%)

Query: 68  LSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFL 104
           L D  +  +   L    L +   V K W R  S   L
Sbjct: 4   LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.17
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.45
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.43
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.39
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.29
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.03
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.6
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.51
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 81.14
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.7e-12  Score=78.33  Aligned_cols=40  Identities=25%  Similarity=0.284  Sum_probs=37.4

Q ss_pred             CCCCchHHHHHhcCCCCchhhhhhhcccHhhhhhhcCCcc
Q 015428           65 NIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFL  104 (407)
Q Consensus        65 ~~~Lpd~lle~IL~rLP~~sl~r~r~VCK~Wr~li~sp~F  104 (407)
                      |..||++++.+||++||+++++|++.|||+|+.+++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            5789999999999999999999999999999999998764
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure