Citrus Sinensis ID: 015432

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
MGPIRGLKRRKKAEKKVDQNVLAAAAASDGDGDGDADADSLVAQPQPLDWWDNFSRRISGPLFGSKTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKFEKIRGFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDIIAGWPGSLTDALVLRNSGFFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGKGLSDIEAEYNKRHSATRMVAQMALARLKDVWRIIHGVMWMPDKNRLPRIVLVCCLLHNIVIDMEDEMLDELPLSYHHDSGYHQQTCESVDKTASVMRDNLSLYLSGKLPP
cccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccEEEEEccEEEEEcccccccccccccccccccccEEEEEcccccEEEEEEcccccccHHHHHHccHHHHHHHHccccccccccccccccccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccc
ccccHHHHcccccHHHHHHHHHHHHccccccccccccccEEEcccccHHHHHHHHHHHcccccccccHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHcccccccEEEEEccEEEEEcccccccccccccccccEEEEEEEEEccccEEEEEEccccccccHHHHHHcHHHHHHHHcccccccccEEccccccccEEEEEcccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccc
mgpirglkrrKKAEKKVDQNVLAAAaasdgdgdgdadadslvaqpqpldwwdnfsrrisgplfgsktsknfESVFKISRKTFDYICSLVKEDLaarqsnfsfsngkplspndMVAIALRRLSSGESLQIIGDLfglnqstvSQVTWRFVESMEErglhhlqwpsketeMEDIKSKFEKIRGFrnccgaidithivmnipavdpannvwydreknYSMILqgivdpemrfrdiiagwpgsLTDALVLrnsgffklteegkrldgkslqlsegielreyiigdtgfpllpwlltpyqgkglsDIEAEYNKRHSATRMVAQMALARLKDVWRIIHGvmwmpdknrlprIVLVCCLLHNIVIDMEDEmldelplsyhhdsgyhqqtcesvDKTASVMRDnlslylsgklpp
mgpirglkrrkkaeKKVDQNVLAAAaasdgdgdgDADADSLVAQPQPLDWWDNFSRRISgplfgsktsknfESVFKISRKTFDYICSLVKEDLAARQSnfsfsngkplspnDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERglhhlqwpsketemEDIKSKFEKIRGFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDIIAGWPGSLTDALVLRNSGFFklteegkrldgkslqlsEGIELREYIIGDTGFPLLPWLLTPYQGKGLSDIEAEYNKRHSATRMVAQMALARLKDVWRIIHGVMwmpdknrlpRIVLVCCLLHNIVIDMEDEMLDELPLSYHHDSGYHQQTCESVDKTASVMRDNlslylsgklpp
MGPIRGLKRRKKAEKKVDQNVLaaaaasdgdgdgdadadsLVAQPQPLDWWDNFSRRISGPLFGSKTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKFEKIRGFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDIIAGWPGSLTDALVLRNSGFFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGKGLSDIEAEYNKRHSATRMVAQMALARLKDVWRIIHGVMWMPDKNRLPRIVLVCCLLHNIVIDMEDEMLDELPLSYHHDSGYHQQTCESVDKTASVMRDNLSLYLSGKLPP
**********************************************PLDWWDNFSRRISGPLFGSKTSKNFESVFKISRKTFDYICSLVKEDLAAR****************MVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQW*********IKSKFEKIRGFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDIIAGWPGSLTDALVLRNSGFFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGKGLSDIEAEYNKRHSATRMVAQMALARLKDVWRIIHGVMWMPDKNRLPRIVLVCCLLHNIVIDMEDEMLDELPLSYHHDSGYHQ**C************************
******************************************AQPQPLDWWDNFSRRISGPLFGSKTSKNFESVFKISRKTFDYICSLVKEDLAARQSNF*F**GKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKFEKIRGFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDIIAGWPGSLTDALVLRNSGFFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGKGLSDIEAEYNKRHSATRMVAQMALARLKDVWRIIHGVMWMPDKNRLPRIVLVCCLLHNIVIDMEDEMLDELPLSY********************MRDNLSLYLSGKL**
*****************DQNVLAAAA**********DADSLVAQPQPLDWWDNFSRRISGPLFGSKTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKFEKIRGFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDIIAGWPGSLTDALVLRNSGFFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGKGLSDIEAEYNKRHSATRMVAQMALARLKDVWRIIHGVMWMPDKNRLPRIVLVCCLLHNIVIDMEDEMLDELPLSYHHDSGYHQQTCESVDKTASVMRDNLSLYLSGKLPP
*************EKKVDQNVLAAAAAS*******ADADSLVAQPQPLDWWDNFSRRISGPLFGSKTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKFEKIRGFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDIIAGWPGSLTDALVLRNSGFFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGKGLSDIEAEYNKRHSATRMVAQMALARLKDVWRIIHGVMWMPDKNRLPRIVLVCCLLHNIVIDMEDEMLDELPLSYH*D*G*HQQTCESVDKTASVMRDNLSLYLSGKLP*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGPIRGLKRRKKAEKKVDQNVLAAAAASDGDGDGDADADSLVAQPQPLDWWDNFSRRISGPLFGSKTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKFEKIRGFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDIIAGWPGSLTDALVLRNSGFFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGKGLSDIEAEYNKRHSATRMVAQMALARLKDVWRIIHGVMWMPDKNRLPRIVLVCCLLHNIVIDMEDEMLDELPLSYHHDSGYHQQTCESVDKTASVMRDNLSLYLSGKLPP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query407 2.2.26 [Sep-21-2011]
B0BN95349 Putative nuclease HARBI1 yes no 0.663 0.773 0.265 2e-24
Q17QR8349 Putative nuclease HARBI1 yes no 0.663 0.773 0.255 2e-23
Q6AZB8349 Putative nuclease HARBI1 no no 0.648 0.756 0.262 2e-23
Q96MB7349 Putative nuclease HARBI1 yes no 0.663 0.773 0.259 2e-23
Q8BR93349 Putative nuclease HARBI1 yes no 0.663 0.773 0.259 4e-22
Q5U538347 Putative nuclease HARBI1 N/A no 0.668 0.783 0.247 1e-17
>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1 Back     alignment and function desciption
 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 27/297 (9%)

Query: 67  TSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGES 126
           T +   S++   R+   Y+  L+   L+ R +  S    + +SP   +  AL   +SG  
Sbjct: 31  TDEYLMSMYGFPRQFIYYLVELLGASLS-RPTQRS----RAISPETQILAALGFYTSGSF 85

Query: 127 LQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKFEKIRGFRNCC 186
              +GD  G++Q+++S+      E++ ER    + +P+ E  ++ +K +F  + G     
Sbjct: 86  QTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPADEAAIQSLKDEFYGLAGMPGVI 145

Query: 187 GAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDIIAGWPGSLTDALVL 246
           GA+D  H+ +  P  +  + V  +R+  +S+    + D       +   WPGSL D  VL
Sbjct: 146 GAVDCIHVAIKAPNAEDLSYV--NRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVL 203

Query: 247 RNSGFFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGKGLSDIEAEY 306
           + S               S Q   G+    +++GD+ F L  WLLTP      +  E  Y
Sbjct: 204 QQSSL-------------SSQFETGMPKDSWLLGDSSFFLHTWLLTPLHIPE-TPAEYRY 249

Query: 307 NKRHSATRMVAQMALARLKDVWRIIHG----VMWMPDKNRLPRIVLVCCLLHNIVID 359
           N+ HSAT  V +  L  L   +R + G    + + P+K+    I+L CC+LHNI ++
Sbjct: 250 NRAHSATHSVIEKTLRTLCCRFRCLDGSKGALQYSPEKSS--HIILACCVLHNISLE 304
Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1 Back     alignment and function description
>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1 Back     alignment and function description
>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1 Back     alignment and function description
>sp|Q8BR93|HARB1_MOUSE Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1 Back     alignment and function description
>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
255582388 591 RNA binding protein, putative [Ricinus c 0.955 0.658 0.699 1e-169
224098298407 predicted protein [Populus trichocarpa] 0.977 0.977 0.698 1e-166
225449613398 PREDICTED: putative nuclease HARBI1 [Vit 0.960 0.982 0.674 1e-162
449459932392 PREDICTED: putative nuclease HARBI1-like 0.963 1.0 0.697 1e-162
225435066384 PREDICTED: putative nuclease HARBI1 [Vit 0.943 1.0 0.638 1e-157
356575367402 PREDICTED: putative nuclease HARBI1-like 0.943 0.955 0.642 1e-149
15233248406 PIF / Ping-Pong family of plant transpos 0.977 0.980 0.656 1e-147
356536488382 PREDICTED: putative nuclease HARBI1-like 0.936 0.997 0.637 1e-147
255638892382 unknown [Glycine max] 0.936 0.997 0.635 1e-146
388490968386 unknown [Lotus japonicus] 0.943 0.994 0.637 1e-144
>gi|255582388|ref|XP_002531983.1| RNA binding protein, putative [Ricinus communis] gi|223528380|gb|EEF30419.1| RNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/403 (69%), Positives = 329/403 (81%), Gaps = 14/403 (3%)

Query: 1   MGPIRGLKRRKKAEKKVDQNVLAAAAASDGDGDGDADADSLVAQPQPLDWWDNFSRRISG 60
           MGPIRGLKRRKKAEKKVDQNVLA+A +S             + Q Q LDWWD+FS+RI+G
Sbjct: 1   MGPIRGLKRRKKAEKKVDQNVLASALSS-------------LKQEQTLDWWDDFSKRITG 47

Query: 61  PLFGSKTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRR 120
           PL GS+ +K FESVFKISRKTF+YICSLV  DL ARQSN + +NGKPLSPND VAIALRR
Sbjct: 48  PLSGSRNTKKFESVFKISRKTFNYICSLVNNDLKARQSNLTGTNGKPLSPNDQVAIALRR 107

Query: 121 LSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKFEKIR 180
           LSSGESL  IGD FG+NQSTVS VTWRFVE+MEERGLHHL+WPS ETEM  IKSKFEKI 
Sbjct: 108 LSSGESLSSIGDSFGVNQSTVSHVTWRFVEAMEERGLHHLRWPSTETEMAAIKSKFEKIH 167

Query: 181 GFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDIIAGWPGSL 240
              NCCG ID TH+VM +PAVD +N+VW DREKN+SM+LQ IVDP+MRFRD+I G+PGSL
Sbjct: 168 SLPNCCGVIDTTHVVMTLPAVDHSNDVWIDREKNHSMVLQAIVDPDMRFRDVIVGYPGSL 227

Query: 241 TDALVLRNSGFFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGKGLS 300
           +DALVL+NS FFKL+EEGKRL+GK ++L EG EL EYIIGD GFPL+PWL TPYQ     
Sbjct: 228 SDALVLQNSSFFKLSEEGKRLNGKKMELMEGTELGEYIIGDAGFPLMPWLFTPYQHPH-Q 286

Query: 301 DIEAEYNKRHSATRMVAQMALARLKDVWRIIHGVMWMPDKNRLPRIVLVCCLLHNIVIDM 360
           + + E+N RHSAT ++AQ+AL RLK++WRIIHGVMW+PDKNRLPRI+ VCCLLHNIVIDM
Sbjct: 287 EHQIEFNNRHSATMLLAQIALTRLKEIWRIIHGVMWLPDKNRLPRIIFVCCLLHNIVIDM 346

Query: 361 EDEMLDELPLSYHHDSGYHQQTCESVDKTASVMRDNLSLYLSG 403
           ED++LDE+P+S  HD  Y QQ CES   + + MR+ LSLYLSG
Sbjct: 347 EDKVLDEMPVSDSHDKDYRQQICESASNSGTEMREKLSLYLSG 389

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224098298|ref|XP_002311148.1| predicted protein [Populus trichocarpa] gi|222850968|gb|EEE88515.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225449613|ref|XP_002279396.1| PREDICTED: putative nuclease HARBI1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459932|ref|XP_004147700.1| PREDICTED: putative nuclease HARBI1-like [Cucumis sativus] gi|449513511|ref|XP_004164345.1| PREDICTED: putative nuclease HARBI1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225435066|ref|XP_002281425.1| PREDICTED: putative nuclease HARBI1 [Vitis vinifera] gi|297746131|emb|CBI16187.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356575367|ref|XP_003555813.1| PREDICTED: putative nuclease HARBI1-like [Glycine max] Back     alignment and taxonomy information
>gi|15233248|ref|NP_191095.1| PIF / Ping-Pong family of plant transposase [Arabidopsis thaliana] gi|7076778|emb|CAB75893.1| putative protein [Arabidopsis thaliana] gi|21593300|gb|AAM65249.1| unknown [Arabidopsis thaliana] gi|26449824|dbj|BAC42035.1| unknown protein [Arabidopsis thaliana] gi|32362295|gb|AAP80175.1| At3g55350 [Arabidopsis thaliana] gi|332645850|gb|AEE79371.1| PIF / Ping-Pong family of plant transposase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356536488|ref|XP_003536769.1| PREDICTED: putative nuclease HARBI1-like [Glycine max] Back     alignment and taxonomy information
>gi|255638892|gb|ACU19748.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388490968|gb|AFK33550.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
TAIR|locus:2099901406 AT3G55350 [Arabidopsis thalian 0.977 0.980 0.647 5.3e-143
TAIR|locus:2077259396 AT3G63270 [Arabidopsis thalian 0.862 0.886 0.508 1.6e-95
TAIR|locus:2143104502 AT5G12010 [Arabidopsis thalian 0.791 0.641 0.287 1.3e-34
ZFIN|ZDB-GENE-050327-32415 zgc:113227 "zgc:113227" [Danio 0.759 0.744 0.308 2.2e-34
TAIR|locus:2123874540 AT4G29780 "AT4G29780" [Arabido 0.783 0.590 0.287 2.2e-28
ZFIN|ZDB-GENE-081022-77394 zgc:194221 "zgc:194221" [Danio 0.803 0.829 0.265 4.6e-25
RGD|1584007349 Harbi1 "harbinger transposase 0.756 0.882 0.261 5.3e-24
UNIPROTKB|F1SIA2349 HARBI1 "Uncharacterized protei 0.756 0.882 0.25 6.8e-24
ZFIN|ZDB-GENE-040608-1349 harbi1 "harbinger transposase 0.643 0.750 0.263 6.8e-24
UNIPROTKB|Q17QR8349 HARBI1 "Putative nuclease HARB 0.756 0.882 0.25 1.1e-23
TAIR|locus:2099901 AT3G55350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1398 (497.2 bits), Expect = 5.3e-143, P = 5.3e-143
 Identities = 264/408 (64%), Positives = 313/408 (76%)

Query:     1 MGPIRGLKRRKKAEKKVDQNVLXXXXXXXXXXXXXXXXXXLV----AQPQPLDWWDNFSR 56
             MGPI+ +K++K+AEKKVD+NVL                        +  Q LDWWD FSR
Sbjct:     1 MGPIKTIKKKKRAEKKVDRNVLLAATAAATSASAAAALNNNDDDDDSSSQSLDWWDGFSR 60

Query:    57 RISGPLFGSKTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAI 116
             RI G   GS   K FESVFKISRKTFDYICSLVK D  A+ +NFS SNG PLS ND VA+
Sbjct:    61 RIYG---GSTDPKTFESVFKISRKTFDYICSLVKADFTAKPANFSDSNGNPLSLNDRVAV 117

Query:   117 ALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKF 176
             ALRRL SGESL +IG+ FG+NQSTVSQ+TWRFVESMEER +HHL WPSK   +++IKSKF
Sbjct:   118 ALRRLGSGESLSVIGETFGMNQSTVSQITWRFVESMEERAIHHLSWPSK---LDEIKSKF 174

Query:   177 EKIRGFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDIIAGW 236
             EKI G  NCCGAIDITHIVMN+PAV+P+N VW D EKN+SM LQ +VDP+MRF D+IAGW
Sbjct:   175 EKISGLPNCCGAIDITHIVMNLPAVEPSNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGW 234

Query:   237 PGSLTDALVLRNSGFFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQG 296
             PGSL D +VL+NSGF+KL E+GKRL+G+ L LSE  ELREYI+GD+GFPLLPWLLTPYQG
Sbjct:   235 PGSLNDDVVLKNSGFYKLVEKGKRLNGEKLPLSERTELREYIVGDSGFPLLPWLLTPYQG 294

Query:   297 KGLSDIEAEYNKRHSATRMVAQMALARLKDVWRIIHGVMWMPDKNRLPRIVLVCCLLHNI 356
             K  S  + E+NKRHS     AQMAL++LKD WRII+GVMWMPD+NRLPRI+ VCCLLHNI
Sbjct:   295 KPTSLPQTEFNKRHSEATKAAQMALSKLKDRWRIINGVMWMPDRNRLPRIIFVCCLLHNI 354

Query:   357 VIDMEDEMLDELPLSYHHDSGYHQQTCESVDKTASVMRDNLSLYLSGK 404
             +IDMED+ LD+ PLS  HD  Y Q++C+  D+ +SV+RD LS  L GK
Sbjct:   355 IIDMEDQTLDDQPLSQQHDMNYRQRSCKLADEASSVLRDELSDQLCGK 402
GO:0005634 "nucleus" evidence=ISM
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
TAIR|locus:2077259 AT3G63270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143104 AT5G12010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050327-32 zgc:113227 "zgc:113227" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2123874 AT4G29780 "AT4G29780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081022-77 zgc:194221 "zgc:194221" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1584007 Harbi1 "harbinger transposase derived 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SIA2 HARBI1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040608-1 harbi1 "harbinger transposase derived 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QR8 HARBI1 "Putative nuclease HARBI1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00080450
hypothetical protein (407 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
pfam13359155 pfam13359, DDE_4, DDE superfamily endonuclease 2e-32
>gnl|CDD|222071 pfam13359, DDE_4, DDE superfamily endonuclease Back     alignment and domain information 
 Score =  119 bits (301), Expect = 2e-32
 Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 22/172 (12%)

Query: 189 IDITHIVMNIPAVDPANNVWYD-REKNYSMILQGIVDPEMRFRDIIAGWPGSLTDALVLR 247
           ID T I +  P         Y   +K+ ++ +  +VDP+ R   +  GWPGS++D  +L 
Sbjct: 1   IDGTEIPIERPKSLEEQAQTYSGYKKHNTLKVLIVVDPDGRIIFVSVGWPGSVSDKRILE 60

Query: 248 NSGFFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTP----YQGKGLSDIE 303
           NSG  +    G                 +Y++ D GFPL   LL P      G  L++ E
Sbjct: 61  NSGLLEKLPPG-----------------DYVLADRGFPLSDSLLAPPAKKPGGAQLTEEE 103

Query: 304 AEYNKRHSATRMVAQMALARLKDVWRIIHGVMWMPDKNRLPRIVLVCCLLHN 355
            E+N+R ++ R+  +  + RLK  +RI+ G + +     L +IVLVCC LHN
Sbjct: 104 VEFNRRIASARIHVERVIGRLKGRFRILRGRLRISKLTTLDKIVLVCCALHN 155

This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Length = 155

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 407
KOG4585326 consensus Predicted transposase [Replication, reco 100.0
PF13359158 DDE_Tnp_4: DDE superfamily endonuclease 100.0
PF04827205 Plant_tran: Plant transposon protein; InterPro: IP 100.0
PF1361353 HTH_Tnp_4: Helix-turn-helix of DDE superfamily end 98.91
PF13612155 DDE_Tnp_1_3: Transposase DDE domain 98.86
PF01609213 DDE_Tnp_1: Transposase DDE domain; InterPro: IPR00 97.19
PF1358688 DDE_Tnp_1_2: Transposase DDE domain 97.04
PF0279645 HTH_7: Helix-turn-helix domain of resolvase; Inter 95.06
PF1393644 HTH_38: Helix-turn-helix domain; PDB: 2W48_A. 95.05
PF0454550 Sigma70_r4: Sigma-70, region 4; InterPro: IPR00763 94.34
PF0421853 CENP-B_N: CENP-B N-terminal DNA-binding domain; In 93.55
smart00351125 PAX Paired Box domain. 92.63
PF0220936 VHP: Villin headpiece domain; InterPro: IPR003128 92.38
PF1338450 HTH_23: Homeodomain-like domain; PDB: 2X48_C. 92.17
PF1351852 HTH_28: Helix-turn-helix domain 92.17
cd00131128 PAX Paired Box domain 91.68
smart0015336 VHP Villin headpiece domain. 91.48
PF0828154 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013 91.15
cd0657190 Bac_DnaA_C C-terminal domain of bacterial DnaA pro 90.81
PF1301185 LZ_Tnp_IS481: leucine-zipper of insertion element 90.45
COG3415138 Transposase and inactivated derivatives [DNA repli 88.55
PRK09638176 RNA polymerase sigma factor SigY; Reviewed 88.36
PF1211682 SpoIIID: Stage III sporulation protein D; InterPro 88.24
PF1334075 DUF4096: Putative transposase of IS4/5 family (DUF 87.55
PRK09413121 IS2 repressor TnpA; Reviewed 86.98
TIGR02950154 SigM_subfam RNA polymerase sigma factor, SigM fami 86.86
PF0522545 HTH_psq: helix-turn-helix, Psq domain; InterPro: I 86.69
smart0042158 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulo 86.39
PRK12519194 RNA polymerase sigma factor; Provisional 85.82
PRK00118104 putative DNA-binding protein; Validated 85.6
cd0617155 Sigma70_r4 Sigma70, region (SR) 4 refers to the mo 85.58
cd0056942 HTH_Hin_like Helix-turn-helix domain of Hin and re 85.18
PRK04217110 hypothetical protein; Provisional 84.58
PRK06030124 hypothetical protein; Provisional 84.27
PRK09639166 RNA polymerase sigma factor SigX; Provisional 84.23
PF0035646 LacI: Bacterial regulatory proteins, lacI family; 84.13
TIGR02392270 rpoH_proteo alternative sigma factor RpoH. A sigma 83.51
PF0152776 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transp 83.27
PF1354252 HTH_Tnp_ISL3: Helix-turn-helix domain of transposa 82.9
TIGR02960324 SigX5 RNA polymerase sigma-70 factor, TIGR02960 fa 82.67
PRK09652182 RNA polymerase sigma factor RpoE; Provisional 82.2
PRK12529178 RNA polymerase sigma factor; Provisional 82.1
TIGR0253188 yecD_yerC TrpR-related protein YerC/YecD. This mod 82.09
TIGR02939190 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A s 81.62
PRK08301234 sporulation sigma factor SigE; Reviewed 81.0
PRK05911257 RNA polymerase sigma factor sigma-28; Reviewed 80.95
PF0496753 HTH_10: HTH DNA binding domain; InterPro: IPR00705 80.81
PRK06704228 RNA polymerase factor sigma-70; Validated 80.78
TIGR02985161 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Ba 80.5
TIGR02937158 sigma70-ECF RNA polymerase sigma factor, sigma-70 80.5
TIGR02947193 SigH_actino RNA polymerase sigma-70 factor, TIGR02 80.41
PHA0067578 hypothetical protein 80.12
>KOG4585 consensus Predicted transposase [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-41  Score=325.66  Aligned_cols=313  Identities=37%  Similarity=0.602  Sum_probs=254.2

Q ss_pred             hcCCCHHHHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432           74 VFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESME  153 (407)
Q Consensus        74 ~frmsr~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~  153 (407)
                      .|++++.+|++|+.............+.......  +...+++.|+.++++.+...++..||...+|+     .+...+.
T Consensus         7 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~i~~~fg~~~~~~-----~~~~~~~   79 (326)
T KOG4585|consen    7 EFRKSYTTFDKICSLVQSLNVVKNSGFMLSSLLP--ADTLVAVALWRLKTGESLRTVEKKFGLGQSTC-----KFLEEKE   79 (326)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhcccchhhhcccc--HHhhhhhhhccccccchHHHHHHHcCCcchhh-----hHHHhhh
Confidence            7899999999999987665554332222222222  89999999999999999999999999999999     6667777


Q ss_pred             HhccccccCCChhhHHHHHHHHHHhhhCCcceeeeeeeeEEEeecCCCCCCcchhcCCCCcceeEEEeeeCCCcceeecc
Q 015432          154 ERGLHHLQWPSKETEMEDIKSKFEKIRGFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDII  233 (407)
Q Consensus       154 ~~~~~~i~~P~~~~~~~~i~~~f~~~~~fp~~vGaIDgt~i~i~~P~~~~~~~~y~~~k~~~s~~~q~v~d~~grf~~v~  233 (407)
                      ..+.+++.||... .+..+.+.|+.   +|+|+|+||+|||++..|+.  ....|.|+  .+++++|+|||.+++|+++.
T Consensus        80 ~~~~~~~~~p~~~-~~~~i~~~~~~---~~~~~g~~d~~hi~~~~~~~--~~~~~~n~--~~~~Nvlav~n~d~~f~~v~  151 (326)
T KOG4585|consen   80 DLAPHFLKWPSRR-ILYEIRERFES---LPNCVGAIDTTHIPIRVPPK--SGSVYFNK--EQSKNLLAVCNFDMRFIYVD  151 (326)
T ss_pred             cccchhhcCchhh-hhhhhcccccc---ccchhccccccccceecCcc--cccccccc--ccchhhhheecCCceEEEEE
Confidence            7889999999977 78888888877   99999999999999998764  45677777  88899999999999999999


Q ss_pred             ccCCCcccccccccccchhhhhhhcccCCCccccCCC-ccccceeeecCCCccCCccccccCCCCCCCchhhhhhhhhhh
Q 015432          234 AGWPGSLTDALVLRNSGFFKLTEEGKRLDGKSLQLSE-GIELREYIIGDTGFPLLPWLLTPYQGKGLSDIEAEYNKRHSA  312 (407)
Q Consensus       234 ~g~pGs~~D~~v~~~S~l~~~l~~g~~l~~~~~~~~~-g~~~~~~llgD~gYpl~~~l~tP~~~~~lt~~~~~fN~~ls~  312 (407)
                      +||||+.||+.|+..+.+.+....+..+   +..+.+ |.+.+.+++|+.+||+.+++|+|+.++..+..++.||++|+.
T Consensus       152 vg~~Gs~~D~kvl~~~~~~~~~~~~~~~---k~yl~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~elFN~rh~~  228 (326)
T KOG4585|consen  152 VGWPGSAHDTKVLQDSLLYKRNFPHPPL---KYYLVDSGYPLRPGLLGPIGFPLYSLLMFPYGGPQPTNSQELFNKRHSS  228 (326)
T ss_pred             ccCCCCccHHHHHHhhcccccccccCCc---cccccccCcccccccccccccccchhhhcccCCCCCCchHHHHhhhhhh
Confidence            9999999999999999988776654332   333333 556788999999999999999999987778999999999999


Q ss_pred             hhhHHHHHHHHHHhHHHhhcccccCCCCCchhHHHHHHHHHhhhhcccCccccCCCCCCCCCCCCc--cccc-ccccChh
Q 015432          313 TRMVAQMALARLKDVWRIIHGVMWMPDKNRLPRIVLVCCLLHNIVIDMEDEMLDELPLSYHHDSGY--HQQT-CESVDKT  389 (407)
Q Consensus       313 ~R~~vE~afg~LK~rfriL~~~~~~~~~~~~~~ii~accvLHN~~i~~~d~~~~~~~~~~~~d~~~--~~~~-~~~~~~~  389 (407)
                      +|.++|++||+||+||+||... +..+..+.+.||.|||+|||+|++.+++..++......+|.+.  .... ..+...-
T Consensus       229 ~r~v~e~~fg~lk~rw~il~~~-~~~~~~~~~~iV~a~caLHN~~~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~  307 (326)
T KOG4585|consen  229 LRSVAERAFGVLKAKWRILQRR-EKYDLKKLPKIVTACCALHNIIRDSDEEDPDDPKWEKFDDYGENVAHLRYAPQQRDY  307 (326)
T ss_pred             HHHHHHHHHHHhhhhhHHHhhc-ccccccchHHHHHHHHHHHHHHHhhcccccccccccccccccccchhcccchhHHHH
Confidence            9999999999999999999987 6678889999999999999999998876655543232233321  1111 2344556


Q ss_pred             HHHHHHHHHHHhccCC
Q 015432          390 ASVMRDNLSLYLSGKL  405 (407)
Q Consensus       390 ~~~~Rd~l~~~l~~~~  405 (407)
                      +...|+.|+..+....
T Consensus       308 ~~~~r~~l~~~l~~~~  323 (326)
T KOG4585|consen  308 MEKIRDNLLSELWNGT  323 (326)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            8888999988887654

>PF13359 DDE_Tnp_4: DDE superfamily endonuclease Back     alignment and domain information
>PF04827 Plant_tran: Plant transposon protein; InterPro: IPR006912 This entry represents a putative Harbinger transposase-derived nuclease, which is thought to have nuclease activity Back     alignment and domain information
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease Back     alignment and domain information
>PF13612 DDE_Tnp_1_3: Transposase DDE domain Back     alignment and domain information
>PF01609 DDE_Tnp_1: Transposase DDE domain; InterPro: IPR002559 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF13586 DDE_Tnp_1_2: Transposase DDE domain Back     alignment and domain information
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms Back     alignment and domain information
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A Back     alignment and domain information
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere Back     alignment and domain information
>smart00351 PAX Paired Box domain Back     alignment and domain information
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia Back     alignment and domain information
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C Back     alignment and domain information
>PF13518 HTH_28: Helix-turn-helix domain Back     alignment and domain information
>cd00131 PAX Paired Box domain Back     alignment and domain information
>smart00153 VHP Villin headpiece domain Back     alignment and domain information
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins Back     alignment and domain information
>PF13011 LZ_Tnp_IS481: leucine-zipper of insertion element IS481 Back     alignment and domain information
>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09638 RNA polymerase sigma factor SigY; Reviewed Back     alignment and domain information
>PF12116 SpoIIID: Stage III sporulation protein D; InterPro: IPR014208 Members of this entry represent the transcriptional regulator SpoIIID, or stage III sporulation protein D Back     alignment and domain information
>PF13340 DUF4096: Putative transposase of IS4/5 family (DUF4096) Back     alignment and domain information
>PRK09413 IS2 repressor TnpA; Reviewed Back     alignment and domain information
>TIGR02950 SigM_subfam RNA polymerase sigma factor, SigM family Back     alignment and domain information
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [] Back     alignment and domain information
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon Back     alignment and domain information
>PRK12519 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK00118 putative DNA-binding protein; Validated Back     alignment and domain information
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs) Back     alignment and domain information
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella Back     alignment and domain information
>PRK04217 hypothetical protein; Provisional Back     alignment and domain information
>PRK06030 hypothetical protein; Provisional Back     alignment and domain information
>PRK09639 RNA polymerase sigma factor SigX; Provisional Back     alignment and domain information
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif Back     alignment and domain information
>TIGR02392 rpoH_proteo alternative sigma factor RpoH Back     alignment and domain information
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition Back     alignment and domain information
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3 Back     alignment and domain information
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family Back     alignment and domain information
>PRK09652 RNA polymerase sigma factor RpoE; Provisional Back     alignment and domain information
>PRK12529 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD Back     alignment and domain information
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE Back     alignment and domain information
>PRK08301 sporulation sigma factor SigE; Reviewed Back     alignment and domain information
>PRK05911 RNA polymerase sigma factor sigma-28; Reviewed Back     alignment and domain information
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif Back     alignment and domain information
>PRK06704 RNA polymerase factor sigma-70; Validated Back     alignment and domain information
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 Back     alignment and domain information
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family Back     alignment and domain information
>TIGR02947 SigH_actino RNA polymerase sigma-70 factor, TIGR02947 family Back     alignment and domain information
>PHA00675 hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.2 bits (137), Expect = 6e-09
 Identities = 57/510 (11%), Positives = 135/510 (26%), Gaps = 189/510 (37%)

Query: 35  DADADSLVAQPQPLDWWDNFSRRISGPLF--GSKTSKNFESVFKISRKTFDYICSLVKED 92
             + D ++          + + R+   L     +  + F  V ++ R  + ++ S +K +
Sbjct: 48  KEEIDHIIMSKDA----VSGTLRLFWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTE 101

Query: 93  LAAR---------QSNFSFSNGKPLSPND------MVAI--ALRRLSSGESLQIIGDL-F 134
                        Q +  +++ +  +  +       + +  AL  L   +++ I G L  
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 135 G--------LNQSTV-----SQVTW---------------------RFVESMEERGLHHL 160
           G             V      ++ W                     +   +   R  H  
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 161 QWPSKETEMEDIKSKFEKIRGFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQ 220
               +   ++    +  K + + NC        +V+         NV  + +        
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCL-------LVL-----L---NVQ-NAK-------- 257

Query: 221 GIVDPEMRF----------RDIIAGWPGSLTDAL----------VLRNSGFFKLTEEGKR 260
              +    F          R         +TD L             +       +E K 
Sbjct: 258 -AWNA---FNLSCKILLTTRFK------QVTDFLSAATTTHISLDHHSMTLTP--DEVKS 305

Query: 261 LDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGKGLSDIEAEYNK-RH---SATRMV 316
           L  K L      +L   ++  T  P    ++     + + D  A ++  +H        +
Sbjct: 306 LLLKYLDCRPQ-DLPREVL--TTNPRRLSII----AESIRDGLATWDNWKHVNCDKLTTI 358

Query: 317 AQMALARL----------------KDVWRIIHGVM---WMPDKNRLPRIVLVCCL----- 352
            + +L  L                     I   ++   W         +V+         
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 353 ----------LHNIVID----------MEDEMLD--ELPLSYHHDS-------------- 376
                     + +I ++          +   ++D   +P ++  D               
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 377 GYHQQTCESVDKTASVMRDNLSL-YLSGKL 405
           G+H +  E  ++        L   +L  K+
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
1tc3_C51 Protein (TC3 transposase); DNA binding, helix-turn 94.05
2w7n_A101 TRFB transcriptional repressor protein; INCP, plas 92.96
1wy3_A35 Villin; structural protein; HET: NLE; 0.95A {Synth 92.77
2glo_A59 Brinker CG9653-PA; protein-DNA complex, helix-turn 92.56
1und_A37 Advillin, P92; actin binding, F-actin binding, cyt 92.17
2jn6_A97 Protein CGL2762, transposase; GFT PSI-2, protein s 90.44
1jko_C52 HIN recombinase, DNA-invertase HIN; water-mediated 90.23
1jhg_A101 Trp operon repressor; complex (regulatory protein- 90.21
1tty_A87 Sigma-A, RNA polymerase sigma factor RPOD; helix-t 90.0
2p7v_B68 Sigma-70, RNA polymerase sigma factor RPOD; RSD, r 89.99
3t72_q99 RNA polymerase sigma factor RPOD, DNA-directed RN 89.6
1ku3_A73 Sigma factor SIGA; helix-turn-helix, transcription 89.27
3hug_A92 RNA polymerase sigma factor; ECF sigma factor, zin 88.97
2o8x_A70 Probable RNA polymerase sigma-C factor; promoter r 88.87
1qzp_A68 Dematin; villin headpiece, actin binding domain, p 86.6
1j1v_A94 Chromosomal replication initiator protein DNAA, 5' 86.38
1fse_A74 GERE; helix-turn-helix DNA-binding protein transcr 85.54
2elh_A87 CG11849-PA, LD40883P; structural genomics, NPPSFA, 85.43
1yu8_X67 Villin; alpha helix, 3-10 helix, structural protei 84.4
1u78_A141 TC3 transposase, transposable element TC3 transpos 84.35
2jpc_A61 SSRB; DNA binding protein, structural genomics, PS 84.0
2k6m_S67 Supervillin; SVHP, HP, headpiece, archvillin, acti 83.59
1k78_A149 Paired box protein PAX5; paired domain, ETS domain 83.26
2jt1_A77 PEFI protein; solution structure, winged helix-tur 83.04
1je8_A82 Nitrate/nitrite response regulator protein NARL; p 82.73
1pdn_C128 Protein (PRD paired); protein-DNA complex, double 82.66
1rp3_A239 RNA polymerase sigma factor sigma-28 (FLIA); trans 82.58
3hot_A345 Transposable element mariner, complete CDS; protei 82.31
1or7_A194 Sigma-24, RNA polymerase sigma-E factor; regulatio 82.13
1s7o_A113 Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SP 81.49
3c57_A95 Two component transcriptional regulatory protein; 81.2
3pvv_A101 Chromosomal replication initiator protein DNAA; he 80.97
1iuf_A144 Centromere ABP1 protein; riken structural genomics 80.93
2jrt_A95 Uncharacterized protein; solution, structure, NESG 80.9
1xsv_A113 Hypothetical UPF0122 protein SAV1236; helix-turn-h 80.86
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2 Back     alignment and structure
Probab=94.05  E-value=0.0043  Score=41.08  Aligned_cols=41  Identities=10%  Similarity=0.030  Sum_probs=31.7

Q ss_pred             CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHH
Q 015432          106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWR  147 (407)
Q Consensus       106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~  147 (407)
                      ..++.+++..+.+. +..|.++..||..+|||.+||++++.+
T Consensus         4 ~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~   44 (51)
T 1tc3_C            4 SALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD   44 (51)
T ss_dssp             CCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence            45777666444443 467899999999999999999998754
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli} Back     alignment and structure
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B* Back     alignment and structure
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster} Back     alignment and structure
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1 Back     alignment and structure
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19 Back     alignment and structure
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C Back     alignment and structure
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A* Back     alignment and structure
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2 Back     alignment and structure
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2 Back     alignment and structure
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B Back     alignment and structure
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A* Back     alignment and structure
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis} Back     alignment and structure
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A Back     alignment and structure
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2 Back     alignment and structure
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2 Back     alignment and structure
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} Back     alignment and structure
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A Back     alignment and structure
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2 Back     alignment and structure
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} Back     alignment and structure
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A Back     alignment and structure
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A Back     alignment and structure
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} Back     alignment and structure
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A Back     alignment and structure
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5 Back     alignment and structure
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A Back     alignment and structure
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* Back     alignment and structure
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A Back     alignment and structure
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3 Back     alignment and structure
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A Back     alignment and structure
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A* Back     alignment and structure
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7 Back     alignment and structure
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides} Back     alignment and structure
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
d1ijwc_47 HIN recombinase (DNA-binding domain) {Synthetic} 96.32
d1rp3a271 Sigma factor sigma-28 (FliA) {Aquifex aeolicus [Ta 93.41
d1hlva166 DNA-binding domain of centromere binding protein B 93.11
d1unda_36 Advillin {Human (Homo sapiens) [TaxId: 9606]} 92.36
d1or7a168 SigmaE factor (RpoE) {Escherichia coli [TaxId: 562 92.12
d1yu8x135 Villin {Chicken (Gallus gallus) [TaxId: 9031]} 91.99
d1k78a163 Pax-5 {Human (Homo sapiens) [TaxId: 9606]} 91.46
d1pdnc_123 Paired protein (prd) {Fruit fly (Drosophila melano 90.65
d1s7oa_106 Hypothetical protein SPy1201 {Streptococcus pyogen 89.42
d1xsva_106 Hypothetical protein SAV1236 {Staphylococcus aureu 86.31
d2jn6a189 Uncharacterized protein Cgl2762 {Corynebacterium g 85.19
d1qzpa_68 Dematin {Human (Homo sapiens) [TaxId: 9606]} 84.8
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 84.26
d1yu5x167 Villin {Chicken (Gallus gallus) [TaxId: 9031]} 83.48
d1a04a167 Nitrate/nitrite response regulator (NarL) {Escheri 81.61
d1qpza157 Purine repressor (PurR), N-terminal domain {Escher 81.54
d1uxda_59 Fructose repressor (FruR), N-terminal domain {Esch 80.72
d1l3la165 Quorum-sensing transcription factor TraR, C-termin 80.67
d2hsga157 Glucose-resistance amylase regulator CcpA, N-termi 80.02
d1fsea_67 Germination protein GerE {Bacillus subtilis [TaxId 80.01
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: HIN recombinase (DNA-binding domain)
species: Synthetic

Probab=96.32  E-value=9.2e-05  Score=48.03  Aligned_cols=39  Identities=21%  Similarity=0.282  Sum_probs=32.9

Q ss_pred             CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhh
Q 015432          106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVT  145 (407)
Q Consensus       106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i  145 (407)
                      +.++ ++|+..+...|+.|.+..+||..||||++|++|++
T Consensus         4 ~~lt-~~q~~~a~~l~~~G~s~~~iA~~~gVSr~TiYry~   42 (47)
T d1ijwc_           4 RAIN-KHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYF   42 (47)
T ss_dssp             CSSC-HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHS
T ss_pred             CcCC-HHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHhhC
Confidence            3344 46777778888999999999999999999999975
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]} Back     information, alignment and structure
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]} Back     information, alignment and structure
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure