Citrus Sinensis ID: 015435

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
Protein Sequence
MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHccccccccccccEEEcccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccHHHccccEEEEEccccHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHcccccccccccccccccccHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHccccccEEcccccccccccHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHcccEEEcccccEEccccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHccccccEEccccccEcccccEcccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccHHHHcccEEEEEEEHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHccEEEEEEcEEccccEEcHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHcHHHHHHHHcccccEEEEEcccccccHHHcEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccEEEccccHHHHHHHHHHHcEEcccccEEEHHHcccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDSESVFgkivrapedpilgVTVAynkdtspvklnlgvgayrteegkpLVLNVVRKAEQLLVNDqsrvkeylpivglvdfNKLSAKLIlgadspaikdnrvTTVQCLSGTGSLRVGAEFLARHYHQLtiyipqptwgnhpkvftlaglsvktyryydpatrglnFQGLLEDLRAAPSGAIVLLHAcahnptgvdptlEQWEQIRQLMRSkgllpffdsayqgfasgsldadaQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVirpmyssppihgASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALsargtpgdwsHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMtsdgrismaglssktvphLTDAIHAAVTRMG
Flexible Loop (DISEMBL)
mdsesvfgkivrapedpilGVTVaynkdtspvkLNLGVGAYRTEEGKPLVLNVVRKAEQLlvndqsrvkeyLPIVGLVDFNKLSAKLILgadspaikdnrVTTVQCLSGTGSLRVGAEFLARHYHQLTIyipqptwgnhPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIrpmyssppihgASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG
Low Complexity Region (SEG)
MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG
Disordered region (IsUnstruct)
*******************GVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGL****V*HLT***********
Disordered Region (DISOPRED)
*DSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM*
Disordered Region (DISEMBL)
MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG
Disordered Region (DISPRO)
*****VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	407	2.2.26 [Sep-21-2011]
P28734	405	Aspartate aminotransferas	N/A	no	0.982	0.987	0.88	0.0
P46644	449	Aspartate aminotransferas	yes	no	0.985	0.893	0.867	0.0
P37833	407	Aspartate aminotransferas	no	no	0.997	0.997	0.862	0.0
P46645	405	Aspartate aminotransferas	no	no	0.992	0.997	0.863	0.0
P28011	418	Aspartate aminotransferas	N/A	no	0.992	0.966	0.846	0.0
P46646	403	Aspartate aminotransferas	no	no	0.985	0.995	0.749	0.0
Q55F21	426	Aspartate aminotransferas	yes	no	0.975	0.931	0.563	1e-135
P26563	454	Aspartate aminotransferas	N/A	no	0.968	0.867	0.575	1e-134
P46248	453	Aspartate aminotransferas	no	no	0.968	0.869	0.560	1e-133
P00508	423	Aspartate aminotransferas	yes	no	0.948	0.912	0.551	1e-127

>sp|P28734|AATC_DAUCA Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/400 (88%), Positives = 377/400 (94%)

Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           SVF  +VRAPEDPILGVTVAY+KD SP KLNLGVGAYRTEEGKPLVLNVV+KAEQ+LVND
Sbjct: 3   SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVND 62

Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
           QSRVKEYLPIVGL DFNKLSAKLI GADSPAI++NRV TVQCLSGTGSLRVG EFLARHY
Sbjct: 63  QSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 122

Query: 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
           H+ T+YIPQPTWGNHPK+FTLAGLSVKTYRYY+P TRGL+F+G+LEDL +AP GAIVLLH
Sbjct: 123 HEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLH 182

Query: 185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
           ACAHNPTGVDPT+EQWEQIRQLMRSK LLPFFDSAYQGFASGSLDADAQSVR+FVADGGE
Sbjct: 183 ACAHNPTGVDPTIEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDADAQSVRIFVADGGE 242

Query: 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
           CL AQSYAKNMGLYGERVGALSIVCKT DVAS+VESQLKLVIRPMYSSPP+HGASIVA I
Sbjct: 243 CLAAQSYAKNMGLYGERVGALSIVCKTADVASKVESQLKLVIRPMYSSPPLHGASIVAAI 302

Query: 305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQ 364
           LKD  +Y EWTLELKAMADRIISMRQ+LF+AL A+GTPGDWSHI+KQIGMFTFTGLNSEQ
Sbjct: 303 LKDGDLYNEWTLELKAMADRIISMRQELFNALQAKGTPGDWSHIVKQIGMFTFTGLNSEQ 362

Query: 365 VAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVT 404
           V FMT EYHIY+TSDGRISMAGLSS+TVPHL DAIHAAVT
Sbjct: 363 VTFMTNEYHIYLTSDGRISMAGLSSRTVPHLADAIHAAVT 402

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.
Daucus carota (taxid: 4039)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1

>sp|P46644|AAT3_ARATH Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP3 PE=1 SV=1

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/401 (86%), Positives = 377/401 (94%)

Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           SVF  +V+APEDPILGVTVAYNKD SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQ L+ND
Sbjct: 47  SVFSHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLIND 106

Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
           ++R+KEYLPIVGLV+FNKLSAKLILGADSPAI++NR+TTV+CLSGTGSLRVG EFLA+HY
Sbjct: 107 RTRIKEYLPIVGLVEFNKLSAKLILGADSPAIRENRITTVECLSGTGSLRVGGEFLAKHY 166

Query: 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
           HQ TIYI QPTWGNHPK+FTLAGL+VKTYRYYDPATRGLNFQGLLEDL AA  G+IVLLH
Sbjct: 167 HQKTIYITQPTWGNHPKIFTLAGLTVKTYRYYDPATRGLNFQGLLEDLGAAAPGSIVLLH 226

Query: 185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
           ACAHNPTGVDPT++QWEQIR+LMRSKGL+PFFDSAYQGFASGSLD DA+ +RMFVADGGE
Sbjct: 227 ACAHNPTGVDPTIQQWEQIRKLMRSKGLMPFFDSAYQGFASGSLDTDAKPIRMFVADGGE 286

Query: 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
           CLVAQSYAKNMGLYGERVGALSIVCK+ DVA RVESQLKLVIRPMYSSPPIHGASIVA I
Sbjct: 287 CLVAQSYAKNMGLYGERVGALSIVCKSADVAGRVESQLKLVIRPMYSSPPIHGASIVAVI 346

Query: 305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQ 364
           L+D  ++ EWTLELKAMADRIISMR+QLF+AL  RGTPGDWSHIIKQIGMFTFTGLN  Q
Sbjct: 347 LRDKNLFNEWTLELKAMADRIISMRKQLFEALRTRGTPGDWSHIIKQIGMFTFTGLNPAQ 406

Query: 365 VAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 405
           V+FMTKEYHIYMTSDGRISMAGLSSKTVPHL DAIHA VT+
Sbjct: 407 VSFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAIHAVVTK 447

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P37833|AATC_ORYSJ Aspartate aminotransferase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os01g0760600 PE=2 SV=1

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/406 (86%), Positives = 377/406 (92%)

Query: 1   MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQL 60
           M S SVF  + +APEDPILGVTVAYNKD SPVK+NLGVGAYRTEEGKPLVLNVVR+AEQ+
Sbjct: 1   MASSSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQM 60

Query: 61  LVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFL 120
           L+N+ SRVKEYLPI GL DFNKLSAKLI GADSPAI++NRV TVQCLSGTGSLRVG EFL
Sbjct: 61  LINNPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFL 120

Query: 121 ARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAI 180
           ARHYH+ TIYIPQPTWGNHPKVFTLAGL+V++YRYYDPATRGL+FQGLLEDL +APSGAI
Sbjct: 121 ARHYHERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAI 180

Query: 181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA 240
           VLLHACAHNPTGVDPTL+QWEQIRQLMRSK LLPFFDSAYQGFASGSLD DAQSVRMFVA
Sbjct: 181 VLLHACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVA 240

Query: 241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASI 300
           DGGE L+AQSYAKNMGLYGERVGALSIVC + DVA RVESQLKLVIRPMYS+PPIHGASI
Sbjct: 241 DGGELLMAQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASI 300

Query: 301 VATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL 360
           VATILKDS M+ EWT+ELK MADRIISMRQQLFDAL  R TPGDWSHIIKQIGMFTFTGL
Sbjct: 301 VATILKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPGDWSHIIKQIGMFTFTGL 360

Query: 361 NSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           NS+QVAFM +EYHIYMTSDGRISMAGLS +T+PHL DAIHAAVT++
Sbjct: 361 NSDQVAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVTKL 406

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P46645|AAT2_ARATH Aspartate aminotransferase, cytoplasmic isozyme 1 OS=Arabidopsis thaliana GN=ASP2 PE=1 SV=2

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/404 (86%), Positives = 373/404 (92%)

Query: 4   ESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN 63
           +SVF  + RAPEDPILGVTVAYN D SPVK+NLGVGAYRTEEGKPLVL+VVRKAEQ LVN
Sbjct: 2   DSVFSNVARAPEDPILGVTVAYNNDPSPVKINLGVGAYRTEEGKPLVLDVVRKAEQQLVN 61

Query: 64  DQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH 123
           D SRVKEY+PIVG+ DFNKLSAKLILGADSPAI ++RVTTVQCLSGTGSLRVGAEFL  H
Sbjct: 62  DPSRVKEYIPIVGISDFNKLSAKLILGADSPAITESRVTTVQCLSGTGSLRVGAEFLKTH 121

Query: 124 YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 183
           YHQ  IYIP+PTWGNHPKVF LAGLSV+ +RYYDPATRGL+F+GLLEDL AAPSGAIVLL
Sbjct: 122 YHQSVIYIPKPTWGNHPKVFNLAGLSVEYFRYYDPATRGLDFKGLLEDLGAAPSGAIVLL 181

Query: 184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243
           HACAHNPTGVDPT EQWEQIRQLMRSK LLPFFDSAYQGFASGSLD DAQSVR FVADGG
Sbjct: 182 HACAHNPTGVDPTSEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDTDAQSVRTFVADGG 241

Query: 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT 303
           ECL+AQSYAKNMGLYGERVGALSIVCK+ DVAS+VESQ+KLV+RPMYSSPPIHGASIVAT
Sbjct: 242 ECLIAQSYAKNMGLYGERVGALSIVCKSADVASKVESQVKLVVRPMYSSPPIHGASIVAT 301

Query: 304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSE 363
           ILK S MY  WT+ELK MADRI SMRQQLF+A+ ARGTPGDWSHIIKQIGMFTFTGLN E
Sbjct: 302 ILKSSDMYNNWTIELKEMADRIKSMRQQLFEAIQARGTPGDWSHIIKQIGMFTFTGLNKE 361

Query: 364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG 407
           QV FMTKE+HIYMTSDGRISMAGLSSKTVPHL DA+HAAVTR+G
Sbjct: 362 QVEFMTKEFHIYMTSDGRISMAGLSSKTVPHLADAMHAAVTRLG 405

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P28011|AAT1_MEDSA Aspartate aminotransferase 1 OS=Medicago sativa GN=AAT-1 PE=2 SV=2

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/404 (84%), Positives = 371/404 (91%)

Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
           S+SVF  +VRAPEDPILGVTVAYNKD SP+KLNLGVGAYRTEEGKPLVL+VVR+ E+ L+
Sbjct: 14  SDSVFAHLVRAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTEEGKPLVLDVVRRVERQLL 73

Query: 63  NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122
           ND SR KEY+PIVGL DFNKLSAKLI GADSPAI++NRVTTVQ LSGTGSLRVG EFLA+
Sbjct: 74  NDMSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQGLSGTGSLRVGGEFLAK 133

Query: 123 HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL 182
           HYHQ  IY+P PTWGNH KVF LAGL+VKTYRYY PATRGL+FQGLLEDL +APSG++VL
Sbjct: 134 HYHQRIIYLPTPTWGNHTKVFNLAGLTVKTYRYYAPATRGLDFQGLLEDLGSAPSGSVVL 193

Query: 183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG 242
           LHACAHNPTGVDPTLEQWEQIRQL+RSK LLPFFDSAYQGFASGSLDADAQ VR+FVADG
Sbjct: 194 LHACAHNPTGVDPTLEQWEQIRQLIRSKSLLPFFDSAYQGFASGSLDADAQPVRLFVADG 253

Query: 243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVA 302
           GE LVAQSYAKNMGLYGERVGALSIV K+ DV+SRVESQLKLVIRPMYSSPPIHGASIVA
Sbjct: 254 GELLVAQSYAKNMGLYGERVGALSIVSKSADVSSRVESQLKLVIRPMYSSPPIHGASIVA 313

Query: 303 TILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNS 362
            ILKD  +Y +WT+ELKAMADRII+MRQQLFDAL ARGTPGDWSHIIKQIGMFTFTGLN 
Sbjct: 314 AILKDRDLYNDWTIELKAMADRIINMRQQLFDALRARGTPGDWSHIIKQIGMFTFTGLNP 373

Query: 363 EQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           EQV+ +TKEYHIY+TSDGRISMAGLSSKTVPHL  AIHA VTR+
Sbjct: 374 EQVSILTKEYHIYLTSDGRISMAGLSSKTVPHLAHAIHAVVTRV 417

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P46646|AAT4_ARATH Aspartate aminotransferase, cytoplasmic isozyme 2 OS=Arabidopsis thaliana GN=ASP4 PE=2 SV=2

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/403 (74%), Positives = 344/403 (85%), Gaps = 2/403 (0%)

Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           S+   ++ APEDP+L V  A   D SPVKLNL  G YRTEEGKPLVL+VVR+AEQ L ND
Sbjct: 3   SILSSVLPAPEDPVLSVIFACRDDPSPVKLNLSAGTYRTEEGKPLVLDVVRRAEQQLAND 62

Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
               KEYLP+ GL +FNKLS KLILG DSPA+K+NRV T QCLSGTGSLRVGAEFLA H 
Sbjct: 63  LD--KEYLPLNGLPEFNKLSTKLILGDDSPALKENRVVTTQCLSGTGSLRVGAEFLATHN 120

Query: 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
            +  I++P PTWGNHP++FTLAGLSV+ +RYYDP +RGL+F+G+LEDL AAP GAIV+L 
Sbjct: 121 KESVIFVPNPTWGNHPRIFTLAGLSVQYFRYYDPKSRGLDFKGMLEDLGAAPPGAIVVLQ 180

Query: 185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
           ACAHNPTGVDPT EQWE+IR+L+RSK LLPFFDSAYQGFASGSLDADAQ+VRMFVADGGE
Sbjct: 181 ACAHNPTGVDPTFEQWEKIRRLVRSKSLLPFFDSAYQGFASGSLDADAQAVRMFVADGGE 240

Query: 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
           CL+AQSYAKNMGLYGER+G+L+IVC +EDVA +VE+Q+ LV+RPMY +PPIHGASIVATI
Sbjct: 241 CLIAQSYAKNMGLYGERIGSLTIVCTSEDVAKKVENQVLLVVRPMYLTPPIHGASIVATI 300

Query: 305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQ 364
           LK+S MY +WT+ELK MADRIISMRQQL+ AL ARGTPGDWSHIIK IGMFTFTGL+ EQ
Sbjct: 301 LKNSDMYNDWTIELKGMADRIISMRQQLYAALEARGTPGDWSHIIKHIGMFTFTGLSEEQ 360

Query: 365 VAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG 407
           V  M KEYHIYMT DGRISMA LSSKTVP L DAIHA VTR+ 
Sbjct: 361 VRLMAKEYHIYMTYDGRISMASLSSKTVPQLADAIHAVVTRIA 403

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q55F21|AATM_DICDI Aspartate aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=aatA PE=3 SV=1

 Score =  480 bits (1236), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/399 (56%), Positives = 293/399 (73%), Gaps = 2/399 (0%)

Query: 7   FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS 66
           +  + + PEDPILGV++AYNKDTSP K+NLGVGAYR E GKP VL+ V+KA++ +  + +
Sbjct: 28  WANVQKGPEDPILGVSIAYNKDTSPSKINLGVGAYRDENGKPYVLDCVKKADKKIY-EAN 86

Query: 67  RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ 126
              EY PIVG+  FN+L+A+L LG +   IK+ R+ TVQ +SGTG+LR+ A+F AR    
Sbjct: 87  VDHEYAPIVGVAAFNQLAAQLALGEECKHIKEKRIATVQSISGTGALRIAADFFARFLKG 146

Query: 127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC 186
            T Y+P PTWGNH  +F  AG+ VK+Y YY+PAT GLNF+ + +D+ AAP G+I+LLHAC
Sbjct: 147 KTAYVPNPTWGNHNVIFNDAGIPVKSYGYYNPATCGLNFEAMTKDIAAAPEGSIILLHAC 206

Query: 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246
           AHNPTGVDPT EQW++I ++ + +G    FD AYQGFASGS + DA +VRMFV DG    
Sbjct: 207 AHNPTGVDPTAEQWKKISEICKERGHFVLFDFAYQGFASGSPEKDAAAVRMFVEDGHNIA 266

Query: 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306
           + QS+AKN GLYGER+GA SI+ +T D A  VESQLK++IRPMYS+PP++GA +V  ILK
Sbjct: 267 LCQSFAKNFGLYGERIGAFSILTETSDQALNVESQLKILIRPMYSNPPVYGARLVQAILK 326

Query: 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVA 366
           D  +  EW  E+K MADRII+MR+QL   L   G+  DWSHI  QIGMF FTGL  EQV 
Sbjct: 327 DKELTNEWRSEVKGMADRIINMREQLVKYLKKHGSTRDWSHITTQIGMFCFTGLTPEQVD 386

Query: 367 FMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 405
            +  EYHIY+T +GRIS+AG++S  V +L  A+ AAVT+
Sbjct: 387 RLANEYHIYLTRNGRISIAGINSTNVEYLAKAM-AAVTK 424

Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P26563|AATM_LUPAN Aspartate aminotransferase P2, mitochondrial (Fragment) OS=Lupinus angustifolius PE=2 SV=1

 Score =  479 bits (1234), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/396 (57%), Positives = 296/396 (74%), Gaps = 2/396 (0%)

Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           S F  I  AP DPILGV+ A+  DTS  KLNLGVGAYRTEE +P VL VV KAE L++ +
Sbjct: 52  SRFEGIPMAPPDPILGVSEAFRADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLML-E 110

Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
           + + KEYL I GL  FNK +A+L+LGAD+PAIK  RV TVQ LSGTGSLR+GA  + R++
Sbjct: 111 RGQNKEYLAIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYF 170

Query: 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
               + I  PTWGNH  +F  A +    YRYYDP T GL+F+G++ED++AAP G  VLLH
Sbjct: 171 PGAKVLISAPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGTFVLLH 230

Query: 185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
            CAHNPTG+DPT EQWE+I  +++ K  +PFFD AYQGFASGSLD DA SVR+FVA G E
Sbjct: 231 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFVARGLE 290

Query: 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
            LVAQSY+KN+GLY ER+GA++++  + + A+RV+SQLK + RPMYS+PP+HGA IVA I
Sbjct: 291 VLVAQSYSKNLGLYAERIGAINVISSSPESAARVKSQLKRIARPMYSNPPVHGARIVADI 350

Query: 305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG-DWSHIIKQIGMFTFTGLNSE 363
           + +  ++ EW +E++ MA RI ++RQQL+D++S++   G DWS I+KQIGMF++TGLN  
Sbjct: 351 VGNPALFDEWKVEMEMMAGRIKNVRQQLYDSISSKDKSGKDWSFILKQIGMFSYTGLNKN 410

Query: 364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAI 399
           Q   MT ++H+YMT DGRIS+AGLS     +L DAI
Sbjct: 411 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 446

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Lupinus angustifolius (taxid: 3871)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P46248|AAT5_ARATH Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP5 PE=1 SV=2

 Score =  473 bits (1218), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 222/396 (56%), Positives = 290/396 (73%), Gaps = 2/396 (0%)

Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           S F  I  AP DPILGV+ A+  DT+ +KLNLGVGAYRTEE +P VLNVV+KAE L++ +
Sbjct: 51  SRFEGITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLML-E 109

Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
           +   KEYLPI GL  FNK +A+L+ GA  P IK+ RV T+Q LSGTGSLR+ A  + R++
Sbjct: 110 RGDNKEYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYF 169

Query: 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
               + I  PTWGNH  +F  A +    YRYYDP T GL+F+G++ D++ AP G+ +LLH
Sbjct: 170 PGAKVVISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLH 229

Query: 185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
            CAHNPTG+DPT EQW +I  +++ K  +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct: 230 GCAHNPTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGME 289

Query: 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
             VAQSY+KN+GLY ER+GA+++VC + D A+RV+SQLK + RPMYS+PP+HGA IVA +
Sbjct: 290 FFVAQSYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPPVHGARIVANV 349

Query: 305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG-DWSHIIKQIGMFTFTGLNSE 363
           + D TM+ EW  E++ MA RI ++RQ+L+D+L ++   G DWS I+KQIGMF+FTGLN  
Sbjct: 350 VGDVTMFSEWKAEMEMMAGRIKTVRQELYDSLVSKDKSGKDWSFILKQIGMFSFTGLNKA 409

Query: 364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAI 399
           Q   MT ++H+YMT DGRIS+AGLS     +L DAI
Sbjct: 410 QSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAI 445

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P00508|AATM_CHICK Aspartate aminotransferase, mitochondrial OS=Gallus gallus GN=GOT2 PE=1 SV=2

 Score =  456 bits (1173), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/388 (55%), Positives = 278/388 (71%), Gaps = 2/388 (0%)

Query: 14  PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLP 73
           P DPILGVT A+ +DT+  K+NLGVGAYR + GK  VLN VRKAE ++   +   KEYLP
Sbjct: 33  PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKSYVLNCVRKAEAMIAAKKMD-KEYLP 91

Query: 74  IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIP 132
           I GL DF + SA+L LG +S A K  R  TVQ +SGTGSLRVGA FL R +     +Y+P
Sbjct: 92  IAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLP 151

Query: 133 QPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTG 192
           +P+WGNH  +F  AGL ++ YRYYDP T  L+F G +ED+   P  +I+LLHACAHNPTG
Sbjct: 152 KPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTG 211

Query: 193 VDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA 252
           VDP  EQW+++  +++ + LL +FD AYQGFASG ++ DA ++R F+  G + +++QSYA
Sbjct: 212 VDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYA 271

Query: 253 KNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYK 312
           KNMGLYGER GA +++C+  + A RVESQLK++IRPMYS+PP++GA I + IL    + K
Sbjct: 272 KNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRK 331

Query: 313 EWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEY 372
           EW +E+K MADRIISMR QL   L   G+  +W HI  QIGMF FTGL  EQV  +TKE+
Sbjct: 332 EWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEF 391

Query: 373 HIYMTSDGRISMAGLSSKTVPHLTDAIH 400
            IYMT DGRIS+AG++S  V +L  AIH
Sbjct: 392 SIYMTKDGRISVAGVASSNVGYLAHAIH 419

Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. May facilitate cellular uptake of long-chain free fatty acids.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
224143559	407	predicted protein [Populus trichocarpa]	1.0	1.0	0.911	0.0
255546447	404	aspartate aminotransferase, putative [Ri	0.992	1.0	0.901	0.0
255551036	440	aspartate aminotransferase, putative [Ri	0.995	0.920	0.906	0.0
366984548	452	putative aspartate aminotransferase 2 [G	0.990	0.891	0.890	0.0
452090848	467	aspartate aminotransferase [Prunus persi	0.995	0.867	0.883	0.0
225445206	411	PREDICTED: aspartate aminotransferase, c	0.987	0.978	0.907	0.0
224089058	449	predicted protein [Populus trichocarpa]	0.995	0.902	0.879	0.0
225430011	450	PREDICTED: aspartate aminotransferase, c	0.985	0.891	0.897	0.0
296081881	422	unnamed protein product [Vitis vinifera]	0.985	0.950	0.897	0.0
147799142	411	hypothetical protein VITISV_020521 [Viti	0.987	0.978	0.900	0.0

>gi|224143559|ref|XP_002324997.1| predicted protein [Populus trichocarpa] gi|118488006|gb|ABK95824.1| unknown [Populus trichocarpa] gi|222866431|gb|EEF03562.1| predicted protein [Populus trichocarpa]

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/407 (91%), Positives = 387/407 (95%)

Query: 1   MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQL 60
           M+S SVF  IVRAPEDPILGVTVAYNKD+SP KLNLGVGAYRTEEGKPLVLNVVR+AEQ+
Sbjct: 1   MESSSVFANIVRAPEDPILGVTVAYNKDSSPHKLNLGVGAYRTEEGKPLVLNVVRRAEQM 60

Query: 61  LVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFL 120
           LVND SRVKEYLPIVGL DFNKLSAKLI GADSPAI++NRVTTVQCLSGTGSLRVGAEFL
Sbjct: 61  LVNDSSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQCLSGTGSLRVGAEFL 120

Query: 121 ARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAI 180
           ARHYHQL IYIP PTWGNH K+F LAGLSVK YRYYDP+TRGL+FQGLLEDL AAPSG+I
Sbjct: 121 ARHYHQLVIYIPNPTWGNHTKIFGLAGLSVKAYRYYDPSTRGLDFQGLLEDLGAAPSGSI 180

Query: 181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA 240
           VLLHACAHNPTGVDPT+EQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA SVRMFVA
Sbjct: 181 VLLHACAHNPTGVDPTIEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAGSVRMFVA 240

Query: 241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASI 300
           DGGECL AQSYAKNMGLYGERVGALSIVCK  DVASRVESQLKLVIRPMYS+PPIHGASI
Sbjct: 241 DGGECLAAQSYAKNMGLYGERVGALSIVCKKADVASRVESQLKLVIRPMYSNPPIHGASI 300

Query: 301 VATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL 360
           VATILKD  MY EWT+ELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL
Sbjct: 301 VATILKDRDMYNEWTVELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL 360

Query: 361 NSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG 407
           N+EQVAFMTKEYHIYMTSDGRISMAGLSS+TVPHLTDAIHAAVTR+G
Sbjct: 361 NTEQVAFMTKEYHIYMTSDGRISMAGLSSRTVPHLTDAIHAAVTRVG 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546447|ref|XP_002514283.1| aspartate aminotransferase, putative [Ricinus communis] gi|223546739|gb|EEF48237.1| aspartate aminotransferase, putative [Ricinus communis]

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/407 (90%), Positives = 385/407 (94%), Gaps = 3/407 (0%)

Query: 1   MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQL 60
           M S SVFG +V+APEDPILGVTVAYNKDTSP KLNLGVGAYRTEEGKPLVLNVVR+AEQ+
Sbjct: 1   MASASVFGNVVQAPEDPILGVTVAYNKDTSPNKLNLGVGAYRTEEGKPLVLNVVREAEQM 60

Query: 61  LVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFL 120
           LVND SR+KEYLPIVGL DFNKLSAKLILGADSPA+++NRV TVQCLSGTGSLRVG EFL
Sbjct: 61  LVNDPSRIKEYLPIVGLADFNKLSAKLILGADSPAVQENRVATVQCLSGTGSLRVGGEFL 120

Query: 121 ARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAI 180
           ARHYHQLTIYIPQPTWGNHPK+FTLAGLSVKTYRYYDPATRGL+FQ   EDL AAP+G++
Sbjct: 121 ARHYHQLTIYIPQPTWGNHPKIFTLAGLSVKTYRYYDPATRGLDFQ---EDLGAAPAGSV 177

Query: 181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA 240
           VLLHACAHNPTGVDPT EQWEQIRQL+RSK  LPFFDSAYQGFASGSLDADAQ VRMFVA
Sbjct: 178 VLLHACAHNPTGVDPTTEQWEQIRQLIRSKAFLPFFDSAYQGFASGSLDADAQPVRMFVA 237

Query: 241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASI 300
           DGGECLVAQSYAKNMGLYGERVGALSIVCKT DVASRVESQLKLVIRPMYS+PPIHGASI
Sbjct: 238 DGGECLVAQSYAKNMGLYGERVGALSIVCKTADVASRVESQLKLVIRPMYSNPPIHGASI 297

Query: 301 VATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL 360
           VATILKD  MY EWT+ELKAMADRIISMRQ+LFDALSARGTPGDWSHIIKQIGMFTFTGL
Sbjct: 298 VATILKDRDMYNEWTVELKAMADRIISMRQKLFDALSARGTPGDWSHIIKQIGMFTFTGL 357

Query: 361 NSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG 407
           NSEQVAFMTKEYHIYMT+DGRISMAGLSSKTVPHL DAIHAAVTR G
Sbjct: 358 NSEQVAFMTKEYHIYMTADGRISMAGLSSKTVPHLADAIHAAVTRFG 404

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551036|ref|XP_002516566.1| aspartate aminotransferase, putative [Ricinus communis] gi|223544386|gb|EEF45907.1| aspartate aminotransferase, putative [Ricinus communis]

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/405 (90%), Positives = 382/405 (94%)

Query: 1   MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQL 60
           +   SVF  +VRAPEDPILGVTVAYNKD SPVKLNLGVGAYRT+EGKPLVL+VVRKAEQ 
Sbjct: 34  IQENSVFSHVVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTDEGKPLVLHVVRKAEQQ 93

Query: 61  LVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFL 120
           LVND+SRVKEYLPI GL DFNKLSAKLI GADSPAI+D+RVTTVQCLSGTGSLRVGAEFL
Sbjct: 94  LVNDRSRVKEYLPITGLSDFNKLSAKLIFGADSPAIQDHRVTTVQCLSGTGSLRVGAEFL 153

Query: 121 ARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAI 180
           ARHYHQ TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDL +APSGAI
Sbjct: 154 ARHYHQRTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLNSAPSGAI 213

Query: 181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA 240
           VLLHACAHNPTGVDPTL+QW QIRQL+RSKGL+PFFDSAYQGFASGSLDADAQ VRMFVA
Sbjct: 214 VLLHACAHNPTGVDPTLQQWAQIRQLLRSKGLMPFFDSAYQGFASGSLDADAQPVRMFVA 273

Query: 241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASI 300
           DGGE LV QSYAKNMGLYGERVGALSIVC+T DVASRVESQLKLVIRPMYS+PPIHGASI
Sbjct: 274 DGGELLVVQSYAKNMGLYGERVGALSIVCRTADVASRVESQLKLVIRPMYSNPPIHGASI 333

Query: 301 VATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL 360
           VA ILKD  +Y EWT+ELKAMADRIISMRQQLFDAL ARGTPGDWSHIIKQIGMFTFTGL
Sbjct: 334 VAFILKDRNLYSEWTIELKAMADRIISMRQQLFDALRARGTPGDWSHIIKQIGMFTFTGL 393

Query: 361 NSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 405
           NSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHL DAIHAAVTR
Sbjct: 394 NSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVTR 438

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|366984548|gb|AEX09183.1| putative aspartate aminotransferase 2 [Gossypium hirsutum]

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/403 (89%), Positives = 384/403 (95%)

Query: 4   ESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN 63
           +SVF  +VRAPEDPILGVTVAYNKD SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQ+L+N
Sbjct: 49  DSVFSHVVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQMLLN 108

Query: 64  DQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH 123
           D+SRVKEYLPIVG+ +FNKLSAKLI GADSPAI++NRVTTVQCLSGTGSLRVGAEFLARH
Sbjct: 109 DKSRVKEYLPIVGIAEFNKLSAKLIFGADSPAIRENRVTTVQCLSGTGSLRVGAEFLARH 168

Query: 124 YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 183
           YHQ TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDP TRG+NFQGLLEDL +APSG+IVLL
Sbjct: 169 YHQKTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPTTRGMNFQGLLEDLGSAPSGSIVLL 228

Query: 184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243
           HACAHNPTGVDPTL+QWEQIRQLMRSK LLPFFDSAYQGFASG+LD DAQS+RMFVADGG
Sbjct: 229 HACAHNPTGVDPTLQQWEQIRQLMRSKALLPFFDSAYQGFASGNLDEDAQSIRMFVADGG 288

Query: 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT 303
           EC VAQSYAKNMGLYGERVGALS+VC+  DVAS+VESQLKLVIRPM+S+PPIHGASIV T
Sbjct: 289 ECFVAQSYAKNMGLYGERVGALSVVCRAADVASKVESQLKLVIRPMFSNPPIHGASIVVT 348

Query: 304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSE 363
           ILKDS M+ EWT+ELKAMADRIISMR+QLFDAL ARGTPGDWSHIIKQIGMFTFTGLNS+
Sbjct: 349 ILKDSNMFNEWTIELKAMADRIISMRKQLFDALRARGTPGDWSHIIKQIGMFTFTGLNSK 408

Query: 364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           QV FMT+EYHIYMTSDGRISMAGLSSKTVPHL DAIHAAVTRM
Sbjct: 409 QVEFMTREYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVTRM 451

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|452090848|gb|AGF95095.1| aspartate aminotransferase [Prunus persica]

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/405 (88%), Positives = 386/405 (95%)

Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
           + SVF  +VRAPEDPILGVTVAYNKD SP KLNLGVGAYRTEEGKPLVLNVVRKAEQLLV
Sbjct: 63  ANSVFAHVVRAPEDPILGVTVAYNKDPSPAKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 122

Query: 63  NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122
           ND+SRVKEYLPIVGL DFNKLSAKLILGADSP I++NR+TTVQCLSGTGSLRVG EFLA+
Sbjct: 123 NDRSRVKEYLPIVGLADFNKLSAKLILGADSPPIQENRITTVQCLSGTGSLRVGGEFLAK 182

Query: 123 HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL 182
           HYH+ TIYIPQPTWGNH KVFTLAGLSVK+YRYYDPATRGL+FQGLLEDLR+AP+GAIVL
Sbjct: 183 HYHERTIYIPQPTWGNHTKVFTLAGLSVKSYRYYDPATRGLDFQGLLEDLRSAPAGAIVL 242

Query: 183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG 242
           LHACAHNPTGVDPTLEQWEQIRQL+RS+GLLPFFDSAYQGFASGSLDADA+SVR F ADG
Sbjct: 243 LHACAHNPTGVDPTLEQWEQIRQLVRSRGLLPFFDSAYQGFASGSLDADAESVRRFAADG 302

Query: 243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVA 302
           GECL+AQSYAKNMGLYGERVGALSIVCKT DVAS+VESQ+KLVIRPMYS+PPIHGASIVA
Sbjct: 303 GECLIAQSYAKNMGLYGERVGALSIVCKTADVASKVESQVKLVIRPMYSNPPIHGASIVA 362

Query: 303 TILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNS 362
           TILKD  ++ EWT+ELKAMADRIISMR QLF++L A+GTPGDWSHIIKQIGMFTFTGLNS
Sbjct: 363 TILKDRDLFNEWTIELKAMADRIISMRHQLFESLRAKGTPGDWSHIIKQIGMFTFTGLNS 422

Query: 363 EQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG 407
           EQVAFMTKEYHIYMTSDGRISMAGLSS+TVPHLT+AIHAAVTR+ 
Sbjct: 423 EQVAFMTKEYHIYMTSDGRISMAGLSSRTVPHLTEAIHAAVTRVA 467

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445206|ref|XP_002284313.1| PREDICTED: aspartate aminotransferase, cytoplasmic [Vitis vinifera] gi|297738807|emb|CBI28052.3| unnamed protein product [Vitis vinifera]

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/402 (90%), Positives = 381/402 (94%)

Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           SVF  IVRAPEDPILGVTVAYNKDTSP+KLNLGVGAYRTEEGKPLVLNVVR+AEQLLVND
Sbjct: 9   SVFSNIVRAPEDPILGVTVAYNKDTSPIKLNLGVGAYRTEEGKPLVLNVVRRAEQLLVND 68

Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
            SRVKEYLPIVGL +FNKLSAKLI GADSPAI++NRV TVQ LSGTGSLR+GAEFLARHY
Sbjct: 69  PSRVKEYLPIVGLAEFNKLSAKLIFGADSPAIQENRVATVQGLSGTGSLRIGAEFLARHY 128

Query: 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
           +Q TIYIP PTWGNHPK+FT+AGLSVKTYRYYDP TRGL+F+GLLEDL AAP+GAIVLLH
Sbjct: 129 YQHTIYIPVPTWGNHPKIFTIAGLSVKTYRYYDPETRGLDFKGLLEDLGAAPTGAIVLLH 188

Query: 185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
           ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE
Sbjct: 189 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 248

Query: 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
           CL AQSYAKNMGLYGERVGALSIVCK  DVASRVESQLKLVIRPMYS+PPIHGASIVATI
Sbjct: 249 CLAAQSYAKNMGLYGERVGALSIVCKAADVASRVESQLKLVIRPMYSNPPIHGASIVATI 308

Query: 305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQ 364
           LKDS MY EWTLELKAMADRIISMRQ LFD L  RGTPGDWSHIIKQIGMFTFTGLN+EQ
Sbjct: 309 LKDSDMYNEWTLELKAMADRIISMRQLLFDTLRDRGTPGDWSHIIKQIGMFTFTGLNTEQ 368

Query: 365 VAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           VAFMTKEYHIYMTSDGRISMAGLSS+TVPHL DAIHAAVTR+
Sbjct: 369 VAFMTKEYHIYMTSDGRISMAGLSSRTVPHLADAIHAAVTRI 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089058|ref|XP_002308618.1| predicted protein [Populus trichocarpa] gi|222854594|gb|EEE92141.1| predicted protein [Populus trichocarpa]

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/405 (87%), Positives = 382/405 (94%)

Query: 2   DSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLL 61
           DS SVF  +VR PEDPILGVTVAYNKD SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLL
Sbjct: 44  DSNSVFSHVVRGPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLL 103

Query: 62  VNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA 121
           VND+SRVKEYLPI GL +FNKLSAKL+ GA+ PAI++NRVTTVQCLSGTGSLRVGAEFLA
Sbjct: 104 VNDRSRVKEYLPITGLAEFNKLSAKLMFGANCPAIQENRVTTVQCLSGTGSLRVGAEFLA 163

Query: 122 RHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIV 181
           +H+HQ TIYIPQPTWGNHPK+FTLAGLSVKTYRYYDPATRGLNFQGL+EDL +APSGAIV
Sbjct: 164 KHHHQRTIYIPQPTWGNHPKIFTLAGLSVKTYRYYDPATRGLNFQGLVEDLNSAPSGAIV 223

Query: 182 LLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD 241
           LLHACAHNPTGVDPT +QWEQIR+LMRSKGL+PFFDSAYQGFASGSLDADAQ VRMFVAD
Sbjct: 224 LLHACAHNPTGVDPTSQQWEQIRKLMRSKGLMPFFDSAYQGFASGSLDADAQPVRMFVAD 283

Query: 242 GGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIV 301
           GGE L+AQSYAKNMGLYGER+GALSIVCKT DVA RVESQLKLVIRPMYS+PPIHGASIV
Sbjct: 284 GGELLLAQSYAKNMGLYGERIGALSIVCKTADVAGRVESQLKLVIRPMYSNPPIHGASIV 343

Query: 302 ATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN 361
           A ILKD  +Y EWT+ELKAMADRIISMRQ+LF+AL ARGTPGDWSHI+KQIGMFTFTGLN
Sbjct: 344 AAILKDRDLYNEWTIELKAMADRIISMRQKLFEALHARGTPGDWSHIVKQIGMFTFTGLN 403

Query: 362 SEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           S+QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHL DA+HAAV R+
Sbjct: 404 SKQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAMHAAVKRV 448

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430011|ref|XP_002284136.1| PREDICTED: aspartate aminotransferase, chloroplastic [Vitis vinifera]

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/401 (89%), Positives = 380/401 (94%)

Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           SVF  +V+APEDPILGVTVAYNKD SPVKLNLGVGAYRTEEGKPLVLNVVR+AEQLLVND
Sbjct: 48  SVFDHVVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRAEQLLVND 107

Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
           +SRVKEYLPIVGL +FNKLSAKL+ GADSPAI+  RVTTVQCLSGTGSLRVGAEFLARH+
Sbjct: 108 RSRVKEYLPIVGLAEFNKLSAKLMFGADSPAIQVKRVTTVQCLSGTGSLRVGAEFLARHH 167

Query: 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
           HQ TIYIPQPTWGNH K+FTLAGLSVKTYRYYDPATRGLNFQGLLEDL  APSGAIVLLH
Sbjct: 168 HQRTIYIPQPTWGNHGKIFTLAGLSVKTYRYYDPATRGLNFQGLLEDLSLAPSGAIVLLH 227

Query: 185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
           ACAHNPTGVDPTL+QWEQIRQL+R KGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE
Sbjct: 228 ACAHNPTGVDPTLQQWEQIRQLIRLKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 287

Query: 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
           CL AQSYAKNMGLYGERVGALSIVCKT DVASRVESQ+KLVIRPM+S+PPIHGASIVA I
Sbjct: 288 CLAAQSYAKNMGLYGERVGALSIVCKTADVASRVESQVKLVIRPMFSNPPIHGASIVAII 347

Query: 305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQ 364
           LK+  MY EWT+ELKAMADRIISMRQQLFDAL ARGTPGDW+HI+KQIGMFTFTGLN+ Q
Sbjct: 348 LKNRDMYNEWTVELKAMADRIISMRQQLFDALRARGTPGDWNHILKQIGMFTFTGLNTAQ 407

Query: 365 VAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 405
           VAFMTKEYH+YMTSDGRISMAGLSSKTVPHL DAIHAAVTR
Sbjct: 408 VAFMTKEYHVYMTSDGRISMAGLSSKTVPHLADAIHAAVTR 448

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081881|emb|CBI20886.3| unnamed protein product [Vitis vinifera]

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/401 (89%), Positives = 380/401 (94%)

Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           SVF  +V+APEDPILGVTVAYNKD SPVKLNLGVGAYRTEEGKPLVLNVVR+AEQLLVND
Sbjct: 20  SVFDHVVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRAEQLLVND 79

Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
           +SRVKEYLPIVGL +FNKLSAKL+ GADSPAI+  RVTTVQCLSGTGSLRVGAEFLARH+
Sbjct: 80  RSRVKEYLPIVGLAEFNKLSAKLMFGADSPAIQVKRVTTVQCLSGTGSLRVGAEFLARHH 139

Query: 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
           HQ TIYIPQPTWGNH K+FTLAGLSVKTYRYYDPATRGLNFQGLLEDL  APSGAIVLLH
Sbjct: 140 HQRTIYIPQPTWGNHGKIFTLAGLSVKTYRYYDPATRGLNFQGLLEDLSLAPSGAIVLLH 199

Query: 185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
           ACAHNPTGVDPTL+QWEQIRQL+R KGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE
Sbjct: 200 ACAHNPTGVDPTLQQWEQIRQLIRLKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 259

Query: 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
           CL AQSYAKNMGLYGERVGALSIVCKT DVASRVESQ+KLVIRPM+S+PPIHGASIVA I
Sbjct: 260 CLAAQSYAKNMGLYGERVGALSIVCKTADVASRVESQVKLVIRPMFSNPPIHGASIVAII 319

Query: 305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQ 364
           LK+  MY EWT+ELKAMADRIISMRQQLFDAL ARGTPGDW+HI+KQIGMFTFTGLN+ Q
Sbjct: 320 LKNRDMYNEWTVELKAMADRIISMRQQLFDALRARGTPGDWNHILKQIGMFTFTGLNTAQ 379

Query: 365 VAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 405
           VAFMTKEYH+YMTSDGRISMAGLSSKTVPHL DAIHAAVTR
Sbjct: 380 VAFMTKEYHVYMTSDGRISMAGLSSKTVPHLADAIHAAVTR 420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799142|emb|CAN70394.1| hypothetical protein VITISV_020521 [Vitis vinifera]

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/402 (90%), Positives = 378/402 (94%)

Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           SVF  IVRAPEDPILGVTVAYNKDTSP+KLNLGVGAYRTEEGKPLVL VVR+AEQLLVND
Sbjct: 9   SVFSNIVRAPEDPILGVTVAYNKDTSPIKLNLGVGAYRTEEGKPLVLKVVRRAEQLLVND 68

Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
            SRVKEYLPIVGL +FNKLSAKLI GADSPAI++NRV TVQ LSGTGSLR+GAEFLARHY
Sbjct: 69  PSRVKEYLPIVGLAEFNKLSAKLIFGADSPAIQENRVATVQGLSGTGSLRIGAEFLARHY 128

Query: 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
           +Q TIYIP PTWGNHPK+FT+AGLSVKTYRYYDP TRGL+F+GLLEDL AAP+GAIVLLH
Sbjct: 129 YQHTIYIPVPTWGNHPKIFTIAGLSVKTYRYYDPETRGLDFKGLLEDLGAAPTGAIVLLH 188

Query: 185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
           ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE
Sbjct: 189 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 248

Query: 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
           CL AQSYAKNMGLYGERVGALSIVCK  DVASRVESQLKLVIRPMYS+PPIHGASIVATI
Sbjct: 249 CLAAQSYAKNMGLYGERVGALSIVCKAADVASRVESQLKLVIRPMYSNPPIHGASIVATI 308

Query: 305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQ 364
           LKDS MY EWT ELKAMADRIISMRQ LFD L  RGTPGDWSHIIKQIGMFTFTGLN+EQ
Sbjct: 309 LKDSDMYNEWTXELKAMADRIISMRQLLFDTLRDRGTPGDWSHIIKQIGMFTFTGLNTEQ 368

Query: 365 VAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           VAFMTKEYHIYMTSDGRISMAGLSS+TVPHL DAI AAVTR+
Sbjct: 369 VAFMTKEYHIYMTSDGRISMAGLSSRTVPHLADAIXAAVTRI 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
UNIPROTKB|P28734	405	P28734 "Aspartate aminotransfe	0.982	0.987	0.88	1.2e-191
TAIR|locus:2144226	449	ASP3 "aspartate aminotransfera	0.985	0.893	0.867	3.7e-190
UNIPROTKB|P37833	407	LOC_Os01g55540 "Aspartate amin	0.997	0.997	0.862	3.3e-189
TAIR|locus:2180826	405	ASP2 "aspartate aminotransfera	0.992	0.997	0.863	2.3e-188
TAIR|locus:2026262	405	ASP4 "aspartate aminotransfera	0.987	0.992	0.756	1.4e-165
DICTYBASE|DDB_G0268664	426	aatA "aspartate transaminase"	0.972	0.929	0.565	2e-120
UNIPROTKB|P26563	454	P26563 "Aspartate aminotransfe	0.968	0.867	0.575	3.2e-120
TAIR|locus:2116682	462	ASP5 "aspartate aminotransfera	0.968	0.852	0.560	2.6e-118
ZFIN|ZDB-GENE-030131-7917	428	got2b "glutamic-oxaloacetic tr	0.982	0.934	0.540	1.2e-115
UNIPROTKB|F1P180	401	GOT2 "Aspartate aminotransfera	0.980	0.995	0.542	2.4e-115

UNIPROTKB|P28734 P28734 "Aspartate aminotransferase, cytoplasmic" [Daucus carota (taxid:4039)]

 Score = 1857 (658.8 bits), Expect = 1.2e-191, P = 1.2e-191
 Identities = 352/400 (88%), Positives = 377/400 (94%)

Query:     5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
             SVF  +VRAPEDPILGVTVAY+KD SP KLNLGVGAYRTEEGKPLVLNVV+KAEQ+LVND
Sbjct:     3 SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVND 62

Query:    65 QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
             QSRVKEYLPIVGL DFNKLSAKLI GADSPAI++NRV TVQCLSGTGSLRVG EFLARHY
Sbjct:    63 QSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 122

Query:   125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
             H+ T+YIPQPTWGNHPK+FTLAGLSVKTYRYY+P TRGL+F+G+LEDL +AP GAIVLLH
Sbjct:   123 HEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLH 182

Query:   185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
             ACAHNPTGVDPT+EQWEQIRQLMRSK LLPFFDSAYQGFASGSLDADAQSVR+FVADGGE
Sbjct:   183 ACAHNPTGVDPTIEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDADAQSVRIFVADGGE 242

Query:   245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
             CL AQSYAKNMGLYGERVGALSIVCKT DVAS+VESQLKLVIRPMYSSPP+HGASIVA I
Sbjct:   243 CLAAQSYAKNMGLYGERVGALSIVCKTADVASKVESQLKLVIRPMYSSPPLHGASIVAAI 302

Query:   305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQ 364
             LKD  +Y EWTLELKAMADRIISMRQ+LF+AL A+GTPGDWSHI+KQIGMFTFTGLNSEQ
Sbjct:   303 LKDGDLYNEWTLELKAMADRIISMRQELFNALQAKGTPGDWSHIVKQIGMFTFTGLNSEQ 362

Query:   365 VAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVT 404
             V FMT EYHIY+TSDGRISMAGLSS+TVPHL DAIHAAVT
Sbjct:   363 VTFMTNEYHIYLTSDGRISMAGLSSRTVPHLADAIHAAVT 402

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

TAIR|locus:2144226 ASP3 "aspartate aminotransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1843 (653.8 bits), Expect = 3.7e-190, P = 3.7e-190
 Identities = 348/401 (86%), Positives = 377/401 (94%)

Query:     5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
             SVF  +V+APEDPILGVTVAYNKD SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQ L+ND
Sbjct:    47 SVFSHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLIND 106

Query:    65 QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
             ++R+KEYLPIVGLV+FNKLSAKLILGADSPAI++NR+TTV+CLSGTGSLRVG EFLA+HY
Sbjct:   107 RTRIKEYLPIVGLVEFNKLSAKLILGADSPAIRENRITTVECLSGTGSLRVGGEFLAKHY 166

Query:   125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
             HQ TIYI QPTWGNHPK+FTLAGL+VKTYRYYDPATRGLNFQGLLEDL AA  G+IVLLH
Sbjct:   167 HQKTIYITQPTWGNHPKIFTLAGLTVKTYRYYDPATRGLNFQGLLEDLGAAAPGSIVLLH 226

Query:   185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
             ACAHNPTGVDPT++QWEQIR+LMRSKGL+PFFDSAYQGFASGSLD DA+ +RMFVADGGE
Sbjct:   227 ACAHNPTGVDPTIQQWEQIRKLMRSKGLMPFFDSAYQGFASGSLDTDAKPIRMFVADGGE 286

Query:   245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
             CLVAQSYAKNMGLYGERVGALSIVCK+ DVA RVESQLKLVIRPMYSSPPIHGASIVA I
Sbjct:   287 CLVAQSYAKNMGLYGERVGALSIVCKSADVAGRVESQLKLVIRPMYSSPPIHGASIVAVI 346

Query:   305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQ 364
             L+D  ++ EWTLELKAMADRIISMR+QLF+AL  RGTPGDWSHIIKQIGMFTFTGLN  Q
Sbjct:   347 LRDKNLFNEWTLELKAMADRIISMRKQLFEALRTRGTPGDWSHIIKQIGMFTFTGLNPAQ 406

Query:   365 VAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 405
             V+FMTKEYHIYMTSDGRISMAGLSSKTVPHL DAIHA VT+
Sbjct:   407 VSFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAIHAVVTK 447

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0010150 "leaf senescence" evidence=IEP

GO:0005777 "peroxisome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009735 "response to cytokinin stimulus" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|P37833 LOC_Os01g55540 "Aspartate aminotransferase, cytoplasmic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1834 (650.7 bits), Expect = 3.3e-189, P = 3.3e-189
 Identities = 350/406 (86%), Positives = 377/406 (92%)

Query:     1 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQL 60
             M S SVF  + +APEDPILGVTVAYNKD SPVK+NLGVGAYRTEEGKPLVLNVVR+AEQ+
Sbjct:     1 MASSSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQM 60

Query:    61 LVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFL 120
             L+N+ SRVKEYLPI GL DFNKLSAKLI GADSPAI++NRV TVQCLSGTGSLRVG EFL
Sbjct:    61 LINNPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFL 120

Query:   121 ARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAI 180
             ARHYH+ TIYIPQPTWGNHPKVFTLAGL+V++YRYYDPATRGL+FQGLLEDL +APSGAI
Sbjct:   121 ARHYHERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAI 180

Query:   181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA 240
             VLLHACAHNPTGVDPTL+QWEQIRQLMRSK LLPFFDSAYQGFASGSLD DAQSVRMFVA
Sbjct:   181 VLLHACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVA 240

Query:   241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASI 300
             DGGE L+AQSYAKNMGLYGERVGALSIVC + DVA RVESQLKLVIRPMYS+PPIHGASI
Sbjct:   241 DGGELLMAQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASI 300

Query:   301 VATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL 360
             VATILKDS M+ EWT+ELK MADRIISMRQQLFDAL  R TPGDWSHIIKQIGMFTFTGL
Sbjct:   301 VATILKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPGDWSHIIKQIGMFTFTGL 360

Query:   361 NSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
             NS+QVAFM +EYHIYMTSDGRISMAGLS +T+PHL DAIHAAVT++
Sbjct:   361 NSDQVAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVTKL 406

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006522 "alanine metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

GO:0006807 "nitrogen compound metabolic process" evidence=ISS

TAIR|locus:2180826 ASP2 "aspartate aminotransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1826 (647.8 bits), Expect = 2.3e-188, P = 2.3e-188
 Identities = 349/404 (86%), Positives = 373/404 (92%)

Query:     4 ESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN 63
             +SVF  + RAPEDPILGVTVAYN D SPVK+NLGVGAYRTEEGKPLVL+VVRKAEQ LVN
Sbjct:     2 DSVFSNVARAPEDPILGVTVAYNNDPSPVKINLGVGAYRTEEGKPLVLDVVRKAEQQLVN 61

Query:    64 DQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH 123
             D SRVKEY+PIVG+ DFNKLSAKLILGADSPAI ++RVTTVQCLSGTGSLRVGAEFL  H
Sbjct:    62 DPSRVKEYIPIVGISDFNKLSAKLILGADSPAITESRVTTVQCLSGTGSLRVGAEFLKTH 121

Query:   124 YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 183
             YHQ  IYIP+PTWGNHPKVF LAGLSV+ +RYYDPATRGL+F+GLLEDL AAPSGAIVLL
Sbjct:   122 YHQSVIYIPKPTWGNHPKVFNLAGLSVEYFRYYDPATRGLDFKGLLEDLGAAPSGAIVLL 181

Query:   184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243
             HACAHNPTGVDPT EQWEQIRQLMRSK LLPFFDSAYQGFASGSLD DAQSVR FVADGG
Sbjct:   182 HACAHNPTGVDPTSEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDTDAQSVRTFVADGG 241

Query:   244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT 303
             ECL+AQSYAKNMGLYGERVGALSIVCK+ DVAS+VESQ+KLV+RPMYSSPPIHGASIVAT
Sbjct:   242 ECLIAQSYAKNMGLYGERVGALSIVCKSADVASKVESQVKLVVRPMYSSPPIHGASIVAT 301

Query:   304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSE 363
             ILK S MY  WT+ELK MADRI SMRQQLF+A+ ARGTPGDWSHIIKQIGMFTFTGLN E
Sbjct:   302 ILKSSDMYNNWTIELKEMADRIKSMRQQLFEAIQARGTPGDWSHIIKQIGMFTFTGLNKE 361

Query:   364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG 407
             QV FMTKE+HIYMTSDGRISMAGLSSKTVPHL DA+HAAVTR+G
Sbjct:   362 QVEFMTKEFHIYMTSDGRISMAGLSSKTVPHLADAMHAAVTRLG 405

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

TAIR|locus:2026262 ASP4 "aspartate aminotransferase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1611 (572.2 bits), Expect = 1.4e-165, P = 1.4e-165
 Identities = 304/402 (75%), Positives = 346/402 (86%)

Query:     5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
             S+   ++ APEDP+L V  A   D SPVKLNL  G YRTEEGKPLVL+VVR+AEQ L ND
Sbjct:     3 SILSSVLPAPEDPVLSVIFACRDDPSPVKLNLSAGTYRTEEGKPLVLDVVRRAEQQLAND 62

Query:    65 QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
              SR KEYLP+ GL +FNKLS KLILG DSPA+K+NRV T QCLSGTGSLRVGAEFLA H 
Sbjct:    63 LSRDKEYLPLNGLPEFNKLSTKLILGDDSPALKENRVVTTQCLSGTGSLRVGAEFLATHN 122

Query:   125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
              +  I++P PTWGNHP++FTLAGLSV+ +RYYDP +RGL+F+G+LEDL AAP GAIV+L 
Sbjct:   123 KESVIFVPNPTWGNHPRIFTLAGLSVQYFRYYDPKSRGLDFKGMLEDLGAAPPGAIVVLQ 182

Query:   185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
             ACAHNPTGVDPT EQWE+IR+L+RSK LLPFFDSAYQGFASGSLDADAQ+VRMFVADGGE
Sbjct:   183 ACAHNPTGVDPTFEQWEKIRRLVRSKSLLPFFDSAYQGFASGSLDADAQAVRMFVADGGE 242

Query:   245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
             CL+AQSYAKNMGLYGER+G+L+IVC +EDVA +VE+Q+ LV+RPMY +PPIHGASIVATI
Sbjct:   243 CLIAQSYAKNMGLYGERIGSLTIVCTSEDVAKKVENQVLLVVRPMYLTPPIHGASIVATI 302

Query:   305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQ 364
             LK+S MY +WT+ELK MADRIISMRQQL+ AL ARGTPGDWSHIIK IGMFTFTGL+ EQ
Sbjct:   303 LKNSDMYNDWTIELKGMADRIISMRQQLYAALEARGTPGDWSHIIKHIGMFTFTGLSEEQ 362

Query:   365 VAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
             V  M KEYHIYMT DGRISMA LSSKTVP L DAIHA VTR+
Sbjct:   363 VRLMAKEYHIYMTYDGRISMASLSSKTVPQLADAIHAVVTRI 404

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=ISS

DICTYBASE|DDB_G0268664 aatA "aspartate transaminase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
 Identities = 226/400 (56%), Positives = 294/400 (73%)

Query:     7 FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS 66
             +  + + PEDPILGV++AYNKDTSP K+NLGVGAYR E GKP VL+ V+KA++ +   ++
Sbjct:    28 WANVQKGPEDPILGVSIAYNKDTSPSKINLGVGAYRDENGKPYVLDCVKKADKKIY--EA 85

Query:    67 RVK-EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
              V  EY PIVG+  FN+L+A+L LG +   IK+ R+ TVQ +SGTG+LR+ A+F AR   
Sbjct:    86 NVDHEYAPIVGVAAFNQLAAQLALGEECKHIKEKRIATVQSISGTGALRIAADFFARFLK 145

Query:   126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
               T Y+P PTWGNH  +F  AG+ VK+Y YY+PAT GLNF+ + +D+ AAP G+I+LLHA
Sbjct:   146 GKTAYVPNPTWGNHNVIFNDAGIPVKSYGYYNPATCGLNFEAMTKDIAAAPEGSIILLHA 205

Query:   186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
             CAHNPTGVDPT EQW++I ++ + +G    FD AYQGFASGS + DA +VRMFV DG   
Sbjct:   206 CAHNPTGVDPTAEQWKKISEICKERGHFVLFDFAYQGFASGSPEKDAAAVRMFVEDGHNI 265

Query:   246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
              + QS+AKN GLYGER+GA SI+ +T D A  VESQLK++IRPMYS+PP++GA +V  IL
Sbjct:   266 ALCQSFAKNFGLYGERIGAFSILTETSDQALNVESQLKILIRPMYSNPPVYGARLVQAIL 325

Query:   306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
             KD  +  EW  E+K MADRII+MR+QL   L   G+  DWSHI  QIGMF FTGL  EQV
Sbjct:   326 KDKELTNEWRSEVKGMADRIINMREQLVKYLKKHGSTRDWSHITTQIGMFCFTGLTPEQV 385

Query:   366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 405
               +  EYHIY+T +GRIS+AG++S  V +L  A+ AAVT+
Sbjct:   386 DRLANEYHIYLTRNGRISIAGINSTNVEYLAKAM-AAVTK 424

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IEA;ISS

GO:0019266 "asparagine biosynthetic process from oxaloacetate" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

GO:0006533 "aspartate catabolic process" evidence=ISS

GO:0006532 "aspartate biosynthetic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P26563 P26563 "Aspartate aminotransferase P2, mitochondrial" [Lupinus angustifolius (taxid:3871)]

 Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
 Identities = 228/396 (57%), Positives = 296/396 (74%)

Query:     5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
             S F  I  AP DPILGV+ A+  DTS  KLNLGVGAYRTEE +P VL VV KAE L++ +
Sbjct:    52 SRFEGIPMAPPDPILGVSEAFRADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLML-E 110

Query:    65 QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
             + + KEYL I GL  FNK +A+L+LGAD+PAIK  RV TVQ LSGTGSLR+GA  + R++
Sbjct:   111 RGQNKEYLAIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYF 170

Query:   125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
                 + I  PTWGNH  +F  A +    YRYYDP T GL+F+G++ED++AAP G  VLLH
Sbjct:   171 PGAKVLISAPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGTFVLLH 230

Query:   185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
              CAHNPTG+DPT EQWE+I  +++ K  +PFFD AYQGFASGSLD DA SVR+FVA G E
Sbjct:   231 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFVARGLE 290

Query:   245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
              LVAQSY+KN+GLY ER+GA++++  + + A+RV+SQLK + RPMYS+PP+HGA IVA I
Sbjct:   291 VLVAQSYSKNLGLYAERIGAINVISSSPESAARVKSQLKRIARPMYSNPPVHGARIVADI 350

Query:   305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG-DWSHIIKQIGMFTFTGLNSE 363
             + +  ++ EW +E++ MA RI ++RQQL+D++S++   G DWS I+KQIGMF++TGLN  
Sbjct:   351 VGNPALFDEWKVEMEMMAGRIKNVRQQLYDSISSKDKSGKDWSFILKQIGMFSYTGLNKN 410

Query:   364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAI 399
             Q   MT ++H+YMT DGRIS+AGLS     +L DAI
Sbjct:   411 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 446

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

TAIR|locus:2116682 ASP5 "aspartate aminotransferase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
 Identities = 222/396 (56%), Positives = 290/396 (73%)

Query:     5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
             S F  I  AP DPILGV+ A+  DT+ +KLNLGVGAYRTEE +P VLNVV+KAE L++ +
Sbjct:    51 SRFEGITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLML-E 109

Query:    65 QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
             +   KEYLPI GL  FNK +A+L+ GA  P IK+ RV T+Q LSGTGSLR+ A  + R++
Sbjct:   110 RGDNKEYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYF 169

Query:   125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184
                 + I  PTWGNH  +F  A +    YRYYDP T GL+F+G++ D++ AP G+ +LLH
Sbjct:   170 PGAKVVISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLH 229

Query:   185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244
              CAHNPTG+DPT EQW +I  +++ K  +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct:   230 GCAHNPTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGME 289

Query:   245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304
               VAQSY+KN+GLY ER+GA+++VC + D A+RV+SQLK + RPMYS+PP+HGA IVA +
Sbjct:   290 FFVAQSYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPPVHGARIVANV 349

Query:   305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG-DWSHIIKQIGMFTFTGLNSE 363
             + D TM+ EW  E++ MA RI ++RQ+L+D+L ++   G DWS I+KQIGMF+FTGLN  
Sbjct:   350 VGDVTMFSEWKAEMEMMAGRIKTVRQELYDSLVSKDKSGKDWSFILKQIGMFSFTGLNKA 409

Query:   364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAI 399
             Q   MT ++H+YMT DGRIS+AGLS     +L DAI
Sbjct:   410 QSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAI 445

GO:0003824 "catalytic activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0033853 "aspartate-prephenate aminotransferase activity" evidence=IDA

GO:0033854 "glutamate-prephenate aminotransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

ZFIN|ZDB-GENE-030131-7917 got2b "glutamic-oxaloacetic transaminase 2b, mitochondrial (aspartate aminotransferase 2)" [Danio rerio (taxid:7955)]

 Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
 Identities = 219/405 (54%), Positives = 289/405 (71%)

Query:     3 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
             + S + ++   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VLN VRKAE L+ 
Sbjct:    27 ASSWWTEVQMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAESLIA 86

Query:    63 NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122
             + ++  KEYL IVGL DFNK  A+L LG DS  +K  R  TVQ +SGTGSLRVGA FL+R
Sbjct:    87 S-KALDKEYLGIVGLGDFNKACAELALGQDSDVLKSKRSITVQTISGTGSLRVGANFLSR 145

Query:   123 HYHQLT--IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAI 180
              +H +   +Y+P+P+WGNH  +F  AG+ +K YRYYDPAT G +F G L+D+   P  ++
Sbjct:   146 -FHTVARDVYLPKPSWGNHTPIFRDAGMQLKAYRYYDPATCGFDFTGALDDISKIPQNSV 204

Query:   181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA 240
             +LLHACAHNPTGVDP  EQW+++  +++ + LLPFFD AYQGFASG +D DA +VR F+ 
Sbjct:   205 ILLHACAHNPTGVDPRPEQWKELSAVIKERKLLPFFDMAYQGFASGDIDRDAWAVRYFIE 264

Query:   241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASI 300
              G   L++QS+AKNMGLYGERVG  ++VC   + A RVESQLK++IRP+YS+PP++GA I
Sbjct:   265 QGHNILLSQSFAKNMGLYGERVGGFTVVCGDAEEAKRVESQLKILIRPIYSNPPMNGARI 324

Query:   301 VATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL 360
              +TIL    +   W  E+K MADRII MR+ L   L   G+  +W H+  QIGMF FTGL
Sbjct:   325 ASTILTTPELRSTWLEEVKGMADRIIRMREMLVTNLKKEGSTHNWQHVTDQIGMFCFTGL 384

Query:   361 NSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 405
               EQV  +TK++ +YMT DGRIS+AG++S  V +L  AIH  VT+
Sbjct:   385 KPEQVERLTKDFSVYMTKDGRISVAGVTSGNVEYLAHAIHQ-VTK 428

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1P180 GOT2 "Aspartate aminotransferase" [Gallus gallus (taxid:9031)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 218/402 (54%), Positives = 285/402 (70%)

Query:     5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
             S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VLN VRKAE ++   
Sbjct:     2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61

Query:    65 QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
             +   KEYLPI GL DF + SA+L LG +S A K  R  TVQ +SGTGSLRVGA FL R +
Sbjct:    62 KMD-KEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 120

Query:   125 H-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 183
                  +Y+P+P+WGNH  +F  AGL ++ YRYYDP T  L+F G +ED+   P  +I+LL
Sbjct:   121 KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILL 180

Query:   184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243
             HACAHNPTGVDP  EQW+++  +++ + LL +FD AYQGFASG ++ DA ++R F+  G 
Sbjct:   181 HACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240

Query:   244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT 303
             + +++QSYAKNMGLYGER GA +++C+  + A RVESQLK++IRPMYS+PP++GA I + 
Sbjct:   241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASL 300

Query:   304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSE 363
             IL    + KEW +E+K MADRIISMR QL   L   G+  +W HI  QIGMF FTGL  E
Sbjct:   301 ILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 360

Query:   364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 405
             QV  +TKE+ IYMT DGRIS+AG++S  V +L  AIH  VT+
Sbjct:   361 QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQ-VTK 401

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006107 "oxaloacetate metabolic process" evidence=IEA

GO:0006532 "aspartate biosynthetic process" evidence=IEA

GO:0006533 "aspartate catabolic process" evidence=IEA

GO:0015908 "fatty acid transport" evidence=IEA

GO:0019550 "glutamate catabolic process to aspartate" evidence=IEA

GO:0019551 "glutamate catabolic process to 2-oxoglutarate" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46646	AAT4_ARATH	2, ., 6, ., 1, ., 1	0.7493	0.9852	0.9950	no	no
P46644	AAT3_ARATH	2, ., 6, ., 1, ., 1	0.8678	0.9852	0.8930	yes	no
P46645	AAT2_ARATH	2, ., 6, ., 1, ., 1	0.8638	0.9926	0.9975	no	no
Q02636	ATTY_RHIME	2, ., 6, ., 1, ., 5	0.3720	0.9164	0.9588	yes	no
P12344	AATM_BOVIN	2, ., 6, ., 1, ., 1	0.5475	0.9508	0.9	yes	no
P05202	AATM_MOUSE	2, ., 6, ., 1, ., 1	0.5526	0.9508	0.9	yes	no
P95468	TYRB_PARDE	2, ., 6, ., 1, ., 5, 7	0.3661	0.9508	0.9822	yes	no
O94320	AATM_SCHPO	2, ., 6, ., 1, ., 1	0.4825	0.9754	0.9084	yes	no
P28011	AAT1_MEDSA	2, ., 6, ., 1, ., 1	0.8465	0.9926	0.9665	N/A	no
Q4R559	AATM_MACFA	2, ., 6, ., 1, ., 1	0.5501	0.9508	0.9	N/A	no
P44425	AAT_HAEIN	2, ., 6, ., 1, ., 1	0.4390	0.9631	0.9898	yes	no
P72173	AAT_PSEAE	2, ., 6, ., 1, ., 1	0.4481	0.9656	0.9874	yes	no
Q28F67	AATM_XENTR	2, ., 6, ., 1, ., 1	0.5513	0.9754	0.9297	yes	no
Q5REB0	AATM_PONAB	2, ., 6, ., 1, ., 1	0.5475	0.9508	0.9	yes	no
P28734	AATC_DAUCA	2, ., 6, ., 1, ., 1	0.88	0.9828	0.9876	N/A	no
P58661	AAT_SALTY	2, ., 6, ., 1, ., 1	0.4472	0.9729	1.0	yes	no
P00508	AATM_CHICK	2, ., 6, ., 1, ., 1	0.5515	0.9484	0.9125	yes	no
P37833	AATC_ORYSJ	2, ., 6, ., 1, ., 1	0.8620	0.9975	0.9975	no	no
P00507	AATM_RAT	2, ., 6, ., 1, ., 1	0.5552	0.9508	0.9	yes	no
P00506	AATM_PIG	2, ., 6, ., 1, ., 1	0.5424	0.9508	0.9	yes	no
P00505	AATM_HUMAN	2, ., 6, ., 1, ., 1	0.5501	0.9508	0.9	yes	no
Q55F21	AATM_DICDI	2, ., 6, ., 1, ., 1	0.5639	0.9754	0.9319	yes	no
P08907	AATM_HORSE	2, ., 6, ., 1, ., 1	0.5516	0.9705	0.9850	yes	no
P23542	AATC_YEAST	2, ., 6, ., 1, ., 1	0.4215	0.9852	0.9593	yes	no
P26563	AATM_LUPAN	2, ., 6, ., 1, ., 1	0.5757	0.9680	0.8678	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.998
4th Layer	2.6.1.1	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XVIII0241	SubName- Full=Putative uncharacterized protein; (407 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.V.2829.1	SubName- Full=Putative uncharacterized protein; (566 aa)						•	•		0.967
	estExt_fgenesh4_pm.C_LG_I0800	asparagine synthase (glutamine-hydrolyzing) (EC-6.3.5.4) (588 aa)						•	•		0.967
	estExt_Genewise1_v1.C_LG_IX3026	asparagine synthase (glutamine-hydrolyzing) (EC-6.3.5.4) (590 aa)						•	•		0.967
	gw1.IV.4171.1	proline dehydrogenase (EC-1.5.99.8) (435 aa)						•	•		0.927
	gw1.123.99.1	proline dehydrogenase (EC-1.5.99.8) (440 aa)						•	•		0.927
	eugene3.00030830	lactate dehydrogenase (EC-1.1.1.27) (351 aa)						•	•		0.916
	estExt_fgenesh4_pg.C_LG_XVI0748	adenylosuccinate synthase (EC-6.3.4.4); Plays an important role in the de novo pathway of purin [...] (491 aa)				•		•	•		0.905
	eugene3.00081537	RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)						•	•		0.903
	estExt_Genewise1_v1.C_2730019	malate dehydrogenase (EC-1.1.1.37) (332 aa)						•	•		0.903
	eugene3.00021309	malate dehydrogenase (EC-1.1.1.37) (332 aa)						•	•		0.903

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	407
PLN02397	423	PLN02397, PLN02397, aspartate transaminase	0.0
PTZ00376	404	PTZ00376, PTZ00376, aspartate aminotransferase; Pr	0.0
PRK09257	396	PRK09257, PRK09257, aromatic amino acid aminotrans	0.0
COG1448	396	COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr	0.0
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	1e-108
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	1e-45
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	2e-13
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	9e-09
TIGR01141	346	TIGR01141, hisC, histidinol-phosphate aminotransfe	1e-06
COG0079	356	COG0079, HisC, Histidinol-phosphate/aromatic amino	7e-06
PRK08637	388	PRK08637, PRK08637, hypothetical protein; Provisio	2e-05
TIGR01140	330	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha	3e-05

>gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase

 Score =  855 bits (2212), Expect = 0.0
 Identities = 312/403 (77%), Positives = 340/403 (84%), Gaps = 1/403 (0%)

Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
           + S F  +  AP DPILGVT A+  D SPVKLNLGVGAYRTEEGKP+VLNVVRKAEQ L+
Sbjct: 20  ASSRFEHVEPAPPDPILGVTEAFLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLL 79

Query: 63  NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122
              SR KEYLPI GL +FNKLSAKL  GADSPAIK+NRV TVQCLSGTGSLR+GAEFLAR
Sbjct: 80  -AGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLAR 138

Query: 123 HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL 182
            Y   TIYIP PTWGNH  +F  AG+ V+TYRYYDP TRGL+F GLLEDL+AAP G+ VL
Sbjct: 139 FYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVL 198

Query: 183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG 242
           LHACAHNPTGVDPT EQWEQI  L++SK  LPFFDSAYQGFASG LDADAQSVRMFV DG
Sbjct: 199 LHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDG 258

Query: 243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVA 302
            E LVAQSYAKNMGLYGERVGALS+VCK+ DVA RV+SQLKL+ RPMYS+PPIHGASIVA
Sbjct: 259 HEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVA 318

Query: 303 TILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNS 362
           TIL D  ++ EWT ELK MADRIISMRQ+L+DAL ARG+PGDWSHI KQIGMF+FTGLN 
Sbjct: 319 TILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLNK 378

Query: 363 EQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 405
           EQV  MTKEYHIYMT DGRISMAGLSSK VP+L DAIHA VT 
Sbjct: 379 EQVDRMTKEYHIYMTRDGRISMAGLSSKNVPYLADAIHAVVTN 421

Length = 423

>gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional

 Score =  652 bits (1684), Expect = 0.0
 Identities = 233/401 (58%), Positives = 295/401 (73%), Gaps = 2/401 (0%)

Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           S+F ++   P DPILG+  A+  D SP K+NLG+GAYR E GKP VL  VRKAE+++  +
Sbjct: 3   SLFSQVPLGPPDPILGLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIA-E 61

Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
           ++  KEYLPI GL  F + + KL+ G  S A+ + R+ TVQ LSGTG+LR+G EFL R  
Sbjct: 62  KNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFL 121

Query: 125 -HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 183
               T+Y+  PTW NH  +F  AGL+VK YRYYDP T+GL+F G+LEDLR AP+G++VLL
Sbjct: 122 PAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLL 181

Query: 184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243
           HACAHNPTGVDPT EQW++I  +M+ K L+PFFD AYQGFASG LD DA ++R+F   G 
Sbjct: 182 HACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGV 241

Query: 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT 303
           E LVAQS++KNMGLYGER+GAL IVC  ++ A+ V SQLKL+IRPMYSSPPIHGA I   
Sbjct: 242 EFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADR 301

Query: 304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSE 363
           IL D  +  EW  ELK M+ RI +MRQ L+D L A G+PGDW HII QIGMF+FTGL  E
Sbjct: 302 ILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLTKE 361

Query: 364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVT 404
           QV  + ++YHIY+  +GRIS+AGL+SK V ++ +AIH  V 
Sbjct: 362 QVERLIEKYHIYLLDNGRISVAGLTSKNVDYVAEAIHDVVR 402

Length = 404

>gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase; Provisional

 Score =  570 bits (1472), Expect = 0.0
 Identities = 199/397 (50%), Positives = 266/397 (67%), Gaps = 3/397 (0%)

Query: 7   FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS 66
           F  +  AP DPILG+  A+  D  P K+NLGVG Y+ E+G+  VL  V+KAE  L+  ++
Sbjct: 2   FEHLEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETET 61

Query: 67  RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ 126
             K YLPI GL  + +   +L+ GADSPA+   RV TVQ   GTG+LRVGA+FL R +  
Sbjct: 62  -TKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPD 120

Query: 127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC 186
             +++  PTW NH  +F  AGL VKTY YYD AT+GL+F  +L DL  AP+G +VLLH C
Sbjct: 121 AKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGC 180

Query: 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246
            HNPTG D T EQW+++ +L++ +GL+PF D AYQGF  G L+ DA  +R F A G E L
Sbjct: 181 CHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDG-LEEDAYGLRAFAAAGLELL 239

Query: 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306
           VA S++KN GLYGERVGALS+V +  + A RV SQLK  IR  YS+PP HGA+IVATIL 
Sbjct: 240 VASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILN 299

Query: 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVA 366
           D  +  EW  EL+ M +RI +MRQ L +AL A+G   D+  I +Q GMF+++GL  EQV 
Sbjct: 300 DPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTPEQVD 359

Query: 367 FMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
            + +E+ +Y    GRI++AGL+   + ++ +AI AAV
Sbjct: 360 RLREEFGVYAVGSGRINVAGLNESNIDYVAEAI-AAV 395

Length = 396

>gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score =  542 bits (1398), Expect = 0.0
 Identities = 207/397 (52%), Positives = 280/397 (70%), Gaps = 2/397 (0%)

Query: 7   FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS 66
           F KI  AP DPILG+  A+  D  P K+NLG+G Y+ E+GK  VL  V+KAE+ L+  + 
Sbjct: 2   FEKIEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQE- 60

Query: 67  RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ 126
           + K YLPI GL +F +   KL+ GADSPA+ ++RV TVQ L GTG+LRV A+FLAR +  
Sbjct: 61  KTKNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPD 120

Query: 127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC 186
            T++I  PTW NH  +F  AGL V+TY YYD  T+GL+F G+L DL+ AP G++VLLH C
Sbjct: 121 ATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGC 180

Query: 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246
            HNPTG+DPT EQW+++  L++ +GL+PFFD AYQGFA G L+ DA ++R+F   G E L
Sbjct: 181 CHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELL 239

Query: 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306
           VA S++KN GLYGERVGALS+V +  + A RV SQLK +IR  YS+PP HGA++VATIL 
Sbjct: 240 VASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILN 299

Query: 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVA 366
           +  +  EW  EL+ M  RI+ MRQ L DAL A G P ++  II Q GMF++TGL+ EQV 
Sbjct: 300 NPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSPEQVD 359

Query: 367 FMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
            + +E+ IY+ + GRI++AGL++  + ++  AI A +
Sbjct: 360 RLREEFGIYLVASGRINVAGLNTSNIDYVAKAIAAVL 396

Length = 396

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score =  323 bits (830), Expect = e-108
 Identities = 121/381 (31%), Positives = 167/381 (43%), Gaps = 36/381 (9%)

Query: 31  PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILG 90
             K+NLG   Y  +      L  V KAE+           Y P  GL +  +  AK +  
Sbjct: 1   TDKINLGSNEYLGDS---GTLPAVAKAEKDA-LAGGTRNLYGPTDGLPELREALAKFLG- 55

Query: 91  ADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSV 150
             SP +K +R   V   SG G+      FL R      I +P PT+ ++ ++F LAG  V
Sbjct: 56  -RSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEV 114

Query: 151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 210
             Y  Y      L+F  L   L+ A  G  V+LH   HNPTG   TLE+ E++  L +  
Sbjct: 115 VRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEH 174

Query: 211 GLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK 270
            +L   D AY GF  G    DA + R  +A+G   LV  S++K  GL G RVG +     
Sbjct: 175 NILLLVDEAYAGFVFG--SLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNA- 231

Query: 271 TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQ 330
                  V SQL+ + RP YSS   H  +  A  L D  +       L+ M  RI   R 
Sbjct: 232 ------AVISQLRKLARPFYSS--THLQAAAAAALSDPLLVASE---LEEMRQRIKERRD 280

Query: 331 QLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV-AF---MTKEYHIYMT--------S 378
            L D L A G     S +  Q G F  TGL+ E   A    + +E  +Y+T         
Sbjct: 281 YLRDGLEAAG----LSVLPSQAGFFLLTGLDPEAALALAQVLLEEVGVYVTPGSSFGGPG 336

Query: 379 DGRISMAGLSSKTVPHLTDAI 399
             RI++AG + + +  L +AI
Sbjct: 337 WLRITVAGGTEEELEELLEAI 357

Length = 357

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score =  160 bits (407), Expect = 1e-45
 Identities = 65/368 (17%), Positives = 124/368 (33%), Gaps = 45/368 (12%)

Query: 34  LNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADS 93
           ++L +G         ++  +   A +  +        Y P  GL +  +  A+ +     
Sbjct: 1   IDLSIGEPDFPPPPEVLEALAAAALRAGLL------GYYPDPGLPELREAIAEWLGRRGG 54

Query: 94  PAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTY 153
             +    +  V       +L +    L        + +P PT+  +     LAG  V   
Sbjct: 55  VDVPPEEI--VVTNGAQEALSLLLRALLNP--GDEVLVPDPTYPGYEAAARLAGAEVVPV 110

Query: 154 RYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLL 213
              +     L+ +  L +    P   ++ L+   +NPTG   + E+ E++ +L +  G+L
Sbjct: 111 PLDEEGGFLLDLE--LLEAAKTPKTKLLYLNNP-NNPTGAVLSEEELEELAELAKKHGIL 167

Query: 214 PFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTED 273
              D AY                  +      +V +S++K  GL G R+G L    +   
Sbjct: 168 IISDEAYAELVYDGEPP---PALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPE--- 221

Query: 274 VASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLF 333
               +  +LK ++    S P     +  A  L D   +      L+ + +R    R  L 
Sbjct: 222 ---ELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEH------LEELRERYRRRRDALL 272

Query: 334 DALSARGTPGDWSHIIKQIGMFTFTGLN----SEQVAFMTKEYHIYMTSDG--------- 380
           +AL   G       +    G F +  L      E +  +  E  + +             
Sbjct: 273 EALKELGPLV---VVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGF 329

Query: 381 -RISMAGL 387
            R+S A  
Sbjct: 330 VRLSFATP 337

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 15/165 (9%)

Query: 103 TVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG 162
            V   SGTG+       L        I         +     LAG         D A  G
Sbjct: 20  AVFVPSGTGANEAALLALLG-PGDEVIVDANGHGSRYWVAAELAGAKPVPVPV-DDAGYG 77

Query: 163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG 222
                +LE+L+A P+ A++++     +   + P  E    IR++ +  G+L   D+A  G
Sbjct: 78  GLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKE----IRKIAKEYGILLLVDAASAG 133

Query: 223 FASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSI 267
            AS +         + + +GG  +V  S  KN+G  GE  G + +
Sbjct: 134 GASPAP-------GVLIPEGGADVVTFSLHKNLG--GEGGGVVIV 169

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 22/214 (10%)

Query: 131 IPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSG---AIVLLHACA 187
           IP P + ++     LAG                 F+  LEDL AA +    AI+L     
Sbjct: 118 IPDPGYPSYEAAVKLAGGKP---VPVPLDEEENGFKPDLEDLEAAITPKTKAIIL--NSP 172

Query: 188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLV 247
           +NPTG   + E+ + I +L R   ++   D  Y+        A+  S+ + +A   +  +
Sbjct: 173 NNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYD--GAEHPSI-LELAGARDRTI 229

Query: 248 A-QSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306
              S++K  G+ G R+G   +V   E++ +     L+ +   + S  P          L 
Sbjct: 230 TINSFSKTYGMTGWRIGW--VVGPPEELIAA----LRKLKSYLTSCAPTPAQYAAIAALN 283

Query: 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARG 340
                +     ++ M +     R  L +AL+  G
Sbjct: 284 GPQSDE----VVEEMREEYRERRDLLVEALNEIG 313

Length = 393

>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 45/214 (21%), Positives = 79/214 (36%), Gaps = 30/214 (14%)

Query: 128 TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA 187
            + +P PT+  +     + G  V      +      + Q  LED+  A      L+  C+
Sbjct: 97  AVLVPPPTYSMYEISAKIHGAEVVKVPLDE------DGQLDLEDILVAIDDKPKLVFLCS 150

Query: 188 -HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246
            +NPTG   +    E + +      L+   D AY  F+         S    +A+    +
Sbjct: 151 PNNPTGNLLSRSDIEAVLERTPEDALV-VVDEAYGEFSGE------PSTLPLLAEYPNLI 203

Query: 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306
           V ++ +K  GL G R+G         ++       L  V  P   S     A+I A  L+
Sbjct: 204 VLRTLSKAFGLAGLRIG---YAIANAEII----DALNKVRAPFNLSRLAQAAAIAA--LR 254

Query: 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARG 340
           D          ++   + I + R++L+D L    
Sbjct: 255 DDD-------FIEKTVEEINAERERLYDGLKKLP 281

Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346

>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 34/215 (15%)

Query: 128 TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA 187
           T+ IP+PT+  +     LAG  V              F+  L+ + AA      L+  C 
Sbjct: 101 TVLIPEPTFSMYEIAAQLAGAEVVKVPL-------KEFRLDLDAILAAIRDKTKLVFLCN 153

Query: 188 -HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246
            +NPTG     E+   + + +   GL+   D AY  F+  S           +      +
Sbjct: 154 PNNPTGTLLPREELRALLEALPEGGLV-VIDEAYIEFSPESSLE-------LLKYPPNLI 205

Query: 247 VAQSYAKNMGLYGERVG-ALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           V ++++K  GL G RVG A++      ++ + +       +RP ++       +     L
Sbjct: 206 VLRTFSKAFGLAGLRVGYAIA----NPELIAALNK-----VRPPFNV-SSPALAAAIAAL 255

Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARG 340
           +D+         L+   +RI   R++L+ AL A G
Sbjct: 256 RDAD-------YLEESVERIREERERLYAALKALG 283

Length = 356

>gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 128 TIYIPQPTWGNHPKVF-TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-PSGAIVLLHA 185
           T+ +P   WGN+   F T  G  + TY  +D    G +   L E L+AA   G ++++  
Sbjct: 95  TVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDG-GFDTDALKEALQAAYNKGKVIVILN 153

Query: 186 CAHNPTGVDPTLEQWEQIRQLMRS-----KGLLPFFDSAYQGF 223
             +NPTG  PT ++   I + ++        ++   D AY G 
Sbjct: 154 FPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGL 196

Length = 388

>gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 48/225 (21%), Positives = 79/225 (35%), Gaps = 43/225 (19%)

Query: 120 LARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGA 179
           L R      + +  PT+  + + +  AG  V      D            + L AA   A
Sbjct: 80  LPRLLAPGRVLVLAPTYSEYARAWRAAGHEVV--ELPDL-----------DRLPAALEEA 126

Query: 180 IVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV 239
            +L+    +NPTG     E    +   +R++G     D A+  F          S+    
Sbjct: 127 DLLVVCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDF------TPDASLAPQA 180

Query: 240 ADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPP--IHG 297
           A     +V +S  K  GL G R+G    V     + +R+   L           P  ++G
Sbjct: 181 ARFPGLVVLRSLTKFFGLAGLRLGF---VVAHPALIARLREAL----------GPWTVNG 227

Query: 298 ASIVATI--LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG 340
            ++ A    L D+     W     A   R+ + R +L   L+  G
Sbjct: 228 PALAAGRAALADT----AWQ---AATRARLAAERARLAALLARLG 265

This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	407
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	100.0
PTZ00376	404	aspartate aminotransferase; Provisional	100.0
PRK09257	396	aromatic amino acid aminotransferase; Provisional	100.0
PLN02397	423	aspartate transaminase	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	100.0
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	100.0
PLN00175	413	aminotransferase family protein; Provisional	100.0
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	100.0
PRK08636	403	aspartate aminotransferase; Provisional	100.0
PRK07366	388	succinyldiaminopimelate transaminase; Validated	100.0
PLN02187	462	rooty/superroot1	100.0
PTZ00377	481	alanine aminotransferase; Provisional	100.0
PRK07681	399	aspartate aminotransferase; Provisional	100.0
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	100.0
PRK06348	384	aspartate aminotransferase; Provisional	100.0
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	100.0
PRK06855	433	aminotransferase; Validated	100.0
PRK09148	405	aminotransferase; Validated	100.0
PRK06207	405	aspartate aminotransferase; Provisional	100.0
PRK08068	389	transaminase; Reviewed	100.0
PLN02656	409	tyrosine transaminase	100.0
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	100.0
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	100.0
PRK07682	378	hypothetical protein; Validated	100.0
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	100.0
PRK05942	394	aspartate aminotransferase; Provisional	100.0
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	100.0
PLN02231	534	alanine transaminase	100.0
PRK06107	402	aspartate aminotransferase; Provisional	100.0
PRK06290	410	aspartate aminotransferase; Provisional	100.0
PRK08912	387	hypothetical protein; Provisional	100.0
PRK08960	387	hypothetical protein; Provisional	100.0
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	100.0
PRK07683	387	aminotransferase A; Validated	100.0
PRK12414	384	putative aminotransferase; Provisional	100.0
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK07337	388	aminotransferase; Validated	100.0
PRK05957	389	aspartate aminotransferase; Provisional	100.0
PRK07309	391	aromatic amino acid aminotransferase; Validated	100.0
PRK06108	382	aspartate aminotransferase; Provisional	100.0
PRK05764	393	aspartate aminotransferase; Provisional	100.0
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	100.0
PRK07324	373	transaminase; Validated	100.0
PTZ00433	412	tyrosine aminotransferase; Provisional	100.0
PRK08175	395	aminotransferase; Validated	100.0
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	100.0
PRK08637	388	hypothetical protein; Provisional	100.0
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK07550	386	hypothetical protein; Provisional	100.0
PRK09082	386	methionine aminotransferase; Validated	100.0
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	100.0
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK09265	404	aminotransferase AlaT; Validated	100.0
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	100.0
PRK08361	391	aspartate aminotransferase; Provisional	100.0
PRK08363	398	alanine aminotransferase; Validated	100.0
PRK05839	374	hypothetical protein; Provisional	100.0
PRK07777	387	aminotransferase; Validated	100.0
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	100.0
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	100.0
PLN02368	407	alanine transaminase	100.0
PRK09275	527	aspartate aminotransferase; Provisional	100.0
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	100.0
PRK07568	397	aspartate aminotransferase; Provisional	100.0
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	100.0
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	100.0
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	100.0
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	100.0
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	100.0
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	100.0
PRK01533	366	histidinol-phosphate aminotransferase; Validated	100.0
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06836	394	aspartate aminotransferase; Provisional	100.0
PRK06358	354	threonine-phosphate decarboxylase; Provisional	100.0
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	100.0
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	100.0
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	100.0
PLN02672	1082	methionine S-methyltransferase	100.0
PRK08056	356	threonine-phosphate decarboxylase; Provisional	100.0
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	100.0
PRK09105	370	putative aminotransferase; Provisional	100.0
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	100.0
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	100.0
PRK07392	360	threonine-phosphate decarboxylase; Validated	100.0
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06225	380	aspartate aminotransferase; Provisional	100.0
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	100.0
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK02731	367	histidinol-phosphate aminotransferase; Validated	100.0
PRK07908	349	hypothetical protein; Provisional	100.0
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	100.0
PRK06425	332	histidinol-phosphate aminotransferase; Validated	100.0
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	100.0
PRK03321	352	putative aminotransferase; Provisional	100.0
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	100.0
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	100.0
KOG0634	472	consensus Aromatic amino acid aminotransferase and	100.0
PRK00950	361	histidinol-phosphate aminotransferase; Validated	100.0
PRK08354	311	putative aminotransferase; Provisional	100.0
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	100.0
cd00609	350	AAT_like Aspartate aminotransferase family. This f	100.0
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	100.0
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.97
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.97
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.96
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.96
PRK02627	396	acetylornithine aminotransferase; Provisional	99.96
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.96
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.96
PLN02822	481	serine palmitoyltransferase	99.96
PRK10534	333	L-threonine aldolase; Provisional	99.96
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.96
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.96
PLN02721	353	threonine aldolase	99.96
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.96
PRK13392	410	5-aminolevulinate synthase; Provisional	99.96
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.95
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.95
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.95
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.95
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.95
PLN02483	489	serine palmitoyltransferase	99.95
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.95
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.95
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.95
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.95
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.95
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.95
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.95
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.95
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.94
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.94
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.94
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.94
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.94
PRK07179	407	hypothetical protein; Provisional	99.94
PLN02242	418	methionine gamma-lyase	99.94
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.94
PRK09064	407	5-aminolevulinate synthase; Validated	99.94
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.94
PRK07049	427	methionine gamma-lyase; Validated	99.94
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.93
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.93
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.93
PRK02948	381	cysteine desulfurase; Provisional	99.93
PLN02409	401	serine--glyoxylate aminotransaminase	99.93
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.93
PRK13393	406	5-aminolevulinate synthase; Provisional	99.93
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.93
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.93
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.93
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.93
PRK04260	375	acetylornithine aminotransferase; Provisional	99.93
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.93
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.93
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.92
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.92
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.92
PLN00144	382	acetylornithine transaminase	99.92
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.92
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.92
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.92
PRK06234	400	methionine gamma-lyase; Provisional	99.92
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.91
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.91
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.91
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.91
PLN02624	474	ornithine-delta-aminotransferase	99.91
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.91
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.91
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.91
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.91
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.91
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.91
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.9
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.9
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.9
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.9
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.9
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.9
PRK06460	376	hypothetical protein; Provisional	99.9
PRK08249	398	cystathionine gamma-synthase; Provisional	99.9
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.9
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.9
PRK06767	386	methionine gamma-lyase; Provisional	99.89
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.89
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.89
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.89
PRK08045	386	cystathionine gamma-synthase; Provisional	99.89
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.89
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.89
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.89
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.89
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.89
PRK07505	402	hypothetical protein; Provisional	99.89
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.89
PRK07582	366	cystathionine gamma-lyase; Validated	99.89
PRK08776	405	cystathionine gamma-synthase; Provisional	99.89
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.88
PRK07811	388	cystathionine gamma-synthase; Provisional	99.88
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.88
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.88
PRK07503	403	methionine gamma-lyase; Provisional	99.88
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.88
PRK08861	388	cystathionine gamma-synthase; Provisional	99.88
PRK08574	385	cystathionine gamma-synthase; Provisional	99.88
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.88
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.88
PLN02955	476	8-amino-7-oxononanoate synthase	99.88
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.88
PRK07050	394	cystathionine beta-lyase; Provisional	99.88
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.87
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.87
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.87
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.87
PRK14012	404	cysteine desulfurase; Provisional	99.87
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.87
PRK05939	397	hypothetical protein; Provisional	99.86
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.86
PRK09028	394	cystathionine beta-lyase; Provisional	99.86
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.86
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.86
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.86
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.86
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.85
PLN02509	464	cystathionine beta-lyase	99.85
PRK07671	377	cystathionine beta-lyase; Provisional	99.85
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.85
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.85
PRK08064	390	cystathionine beta-lyase; Provisional	99.85
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.85
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.84
PRK05968	389	hypothetical protein; Provisional	99.84
PRK06541	460	hypothetical protein; Provisional	99.84
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.84
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.84
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.84
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.84
PRK05967	395	cystathionine beta-lyase; Provisional	99.84
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.84
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.83
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.83
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.83
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.83
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.83
PRK06062	451	hypothetical protein; Provisional	99.83
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.83
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.83
PLN02651	364	cysteine desulfurase	99.83
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.82
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.82
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.82
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.82
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.82
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.81
PRK07482	461	hypothetical protein; Provisional	99.81
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.81
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.81
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.81
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.81
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.81
PRK05965	459	hypothetical protein; Provisional	99.81
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.8
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.8
PRK07678	451	aminotransferase; Validated	99.8
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.8
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.8
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.8
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.8
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.79
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.79
PRK06105	460	aminotransferase; Provisional	99.79
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.79
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.79
PRK06917	447	hypothetical protein; Provisional	99.79
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.79
PRK07036	466	hypothetical protein; Provisional	99.79
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.79
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.79
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.78
PRK07481	449	hypothetical protein; Provisional	99.78
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.78
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.78
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.78
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.77
PRK07480	456	putative aminotransferase; Validated	99.77
PRK12403	460	putative aminotransferase; Provisional	99.77
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.77
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.77
PRK07046	453	aminotransferase; Validated	99.77
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.77
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.76
PRK07483	443	hypothetical protein; Provisional	99.76
PRK08114	395	cystathionine beta-lyase; Provisional	99.76
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.76
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.75
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.74
PRK06148	1013	hypothetical protein; Provisional	99.74
PRK06149	972	hypothetical protein; Provisional	99.73
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.73
PRK13237	460	tyrosine phenol-lyase; Provisional	99.72
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.72
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	99.72
PRK02769	380	histidine decarboxylase; Provisional	99.71
PRK08297	443	L-lysine aminotransferase; Provisional	99.71
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.71
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.7
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.7
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.7
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.69
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.69
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.68
PRK06434	384	cystathionine gamma-lyase; Validated	99.68
PLN02271	586	serine hydroxymethyltransferase	99.67
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.67
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.67
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.67
PLN03032	374	serine decarboxylase; Provisional	99.66
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.66
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.65
PRK04311	464	selenocysteine synthase; Provisional	99.65
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.64
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.64
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.64
PLN02724	805	Molybdenum cofactor sulfurase	99.63
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.63
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.62
PLN02263	470	serine decarboxylase	99.61
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.61
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.61
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.61
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.61
PLN02880	490	tyrosine decarboxylase	99.6
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.6
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.59
PLN02590	539	probable tyrosine decarboxylase	99.59
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.59
PRK15029	755	arginine decarboxylase; Provisional	99.59
PRK03080	378	phosphoserine aminotransferase; Provisional	99.58
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.56
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.56
PRK13578	720	ornithine decarboxylase; Provisional	99.53
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.52
PRK15400	714	lysine decarboxylase CadA; Provisional	99.52
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.5
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.48
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.45
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.42
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.42
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.41
PRK05367	954	glycine dehydrogenase; Provisional	99.38
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.35
PLN02452	365	phosphoserine transaminase	99.35
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.33
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.33
PRK12566	954	glycine dehydrogenase; Provisional	99.31
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.3
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.26
PRK12462	364	phosphoserine aminotransferase; Provisional	99.23
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	99.22
PRK05367	954	glycine dehydrogenase; Provisional	99.18
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.1
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.1
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	99.01
COG4100	416	Cystathionine beta-lyase family protein involved i	99.0
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.98
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	98.94
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	98.93
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.92
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	98.92
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.82
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	98.8
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.59
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.53
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.48
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.46
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.46
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	98.43
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	98.34
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	98.26
PRK12566	954	glycine dehydrogenase; Provisional	97.95
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.7
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	97.25
PLN02672	1082	methionine S-methyltransferase	96.32
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	96.25
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	95.72
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	89.08
cd06568	329	GH20_SpHex_like A subgroup of the Glycosyl hydrola	84.7
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	82.3
cd02742	303	GH20_hexosaminidase Beta-N-acetylhexosaminidases o	82.28

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=8.3e-60  Score=416.20  Aligned_cols=395  Identities=53%  Similarity=0.935  Sum_probs=376.8

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      ||.++...|+++|+++...+++++++++|||++|++.|+.|.++..+.|+++...+. +......|.|..|++.++++++
T Consensus         1 ~F~~i~~~p~DpIlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~-~~~~~k~Yl~i~G~~~f~~~~~   79 (396)
T COG1448           1 MFEKIEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLL-EQEKTKNYLPIEGLPEFLEAVQ   79 (396)
T ss_pred             CccccccCCCCchhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhh-ccccccccCCcCCcHHHHHHHH
Confidence            578999999999999999999999999999999999999998888899999998887 4457888999999999999999


Q ss_pred             HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435           86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF  165 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  165 (407)
                      +++++..+..++.+++..+||.|||+|+.+...++....+..+|.+++|+|++|..+++.+|.++..||++|..+.++|+
T Consensus        80 ~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df  159 (396)
T COG1448          80 KLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDF  159 (396)
T ss_pred             HHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccH
Confidence            99999887777889999999999999999999999888888899999999999999999999999999999999899999


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +.+.+.+.+.+...+++++.+||||||.-++.++|++|+++.++++++.++|-||++|..+ .+.|.+.++.+.......
T Consensus       160 ~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~  238 (396)
T COG1448         160 DGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPEL  238 (396)
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcE
Confidence            9999999988899999999999999999999999999999999999999999999999987 888999999998888889


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                      ++..||||+||+-|.|+|.+.+++.|.+...++.+.+....+..+++||..+..++..+|++++++.+|...+..+++++
T Consensus       239 lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri  318 (396)
T COG1448         239 LVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRI  318 (396)
T ss_pred             EEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHH
Q 015435          326 ISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~  402 (407)
                      .++|..|.+.|+..+.+..|+++..+.|+|.+.+++.+++.++.++++|++..+|||+++++++..++.++++|.++
T Consensus       319 ~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~~QV~rLree~~IY~v~sGRi~vaGl~~~ni~~va~ai~~v  395 (396)
T COG1448         319 LEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSPEQVDRLREEFGIYLVASGRINVAGLNTSNIDYVAKAIAAV  395 (396)
T ss_pred             HHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCCHHHHHHHHHhccEEEecCCeeeeccCChhhHHHHHHHHHhh
Confidence            99999999999998877789999999999999999999999999999999999999999999999999999999876

>PTZ00376 aspartate aminotransferase; Provisional

Probab=100.00  E-value=7.2e-55  Score=416.74  Aligned_cols=399  Identities=58%  Similarity=0.997  Sum_probs=319.5

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      +|.|+...+.++++...+.+++..+++.+||+.|.|.+..+.+.+.+.+.++...+. ......+|++..|.+++|++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~Y~~~~G~~~lR~aia   82 (404)
T PTZ00376          4 LFSQVPLGPPDPILGLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIA-EKNLDKEYLPIEGLQSFIEAAQ   82 (404)
T ss_pred             hhhcCCcCCCChHHHHHHHHhhcCCcccEecccceeECCCCCEehhhHHHHHHHHhc-cccCCCCCCCCCCCHHHHHHHH
Confidence            688888888888888777776555578999999987443442334455555544443 2344578999999999999999


Q ss_pred             HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHH-HhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFL-ARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~-~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      +++.+..+..+++++|++.+|.|+++++.++..++ ..+.+||+|++++|+|+.|...++..|++++.+|+.+++++++|
T Consensus        83 ~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d  162 (404)
T PTZ00376         83 KLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLD  162 (404)
T ss_pred             HHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcC
Confidence            99966655556788998333999999999986544 34579999999999999999999999999999999544568999


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++.+++.+.+......++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++.+.+..++..+....++
T Consensus       163 ~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~  242 (404)
T PTZ00376        163 FDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVE  242 (404)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCc
Confidence            99999998643233455666999999999999999999999999999999999999999985321123344444444568


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +++++||||.|+++|+|+||+.+++.++++.+++...+....+..+.+++.++|.++..++++..+.+.|.+.+++.+++
T Consensus       243 vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  322 (404)
T PTZ00376        243 FLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGR  322 (404)
T ss_pred             EEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999843356777777777666655544455678889999999998876556666777888899


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHHHH
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      ++++++.+.+.|++.+.+..+.+..|+||+|.|++++.+++.++++++||.+.|+|||+++.+++++++.++++|++++.
T Consensus       323 ~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~~~~~~~L~~~~~v~v~p~~Ris~~~~~~~~~~~~~~~l~~~~~  402 (404)
T PTZ00376        323 IQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLTKEQVERLIEKYHIYLLDNGRISVAGLTSKNVDYVAEAIHDVVR  402 (404)
T ss_pred             HHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCCHHHHHHHHHhCCEeecCCCeEEEeccCHHhHHHHHHHHHHHHh
Confidence            99999999999998764323566688999999999999999999998999999999999986799999999999999875


Q ss_pred             h
Q 015435          405 R  405 (407)
Q Consensus       405 ~  405 (407)
                      .
T Consensus       403 ~  403 (404)
T PTZ00376        403 N  403 (404)
T ss_pred             c
Confidence            3

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=100.00  E-value=1.5e-54  Score=413.92  Aligned_cols=393  Identities=49%  Similarity=0.866  Sum_probs=317.8

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCcccc-chhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLV-LNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      ||+|+...+++++..+...++....++.|||++|.+.++++ ..| .+.+.++..++. ......+|++..|.+++|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~-~~p~~~~l~~a~~~~~-~~~~~~~Y~~~~G~~~lR~ai   78 (396)
T PRK09257          1 MFEHLEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQG-RTPVLRAVKKAEARLL-ETETTKNYLPIEGLAAYRQAV   78 (396)
T ss_pred             CcccCCCCCCChHHHHHHHHhhCCCcCcEecceeeEECCCC-CEeccHHHHHHHHHhc-ccccCCCcCCCCCCHHHHHHH
Confidence            47888888888888877777654457899999999866555 334 345555555554 223456799999999999999


Q ss_pred             HHHHhCCCCCCCCCCce--EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435           85 AKLILGADSPAIKDNRV--TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG  162 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i--~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~  162 (407)
                      ++++.+.++..+++++|  ++  |+|+++++.++.+++..+.+||+|++++|+|+.|...++..|++++.+|+.++++++
T Consensus        79 a~~~~~~~~~~~~~~~i~v~i--T~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~  156 (396)
T PRK09257         79 QELLFGADSPALAAGRVATVQ--TPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKG  156 (396)
T ss_pred             HHHhcCCCCcccccCeEEEEe--cCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCc
Confidence            99997665544567887  78  999999999996656556899999999999999999999999999999985455679


Q ss_pred             cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      +|++++++.+.+.+....++++++||||||.++|.+++++|+++|++||+++|+||+|.++.++. +.+..++..+....
T Consensus       157 ~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~~  235 (396)
T PRK09257        157 LDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGL-EEDAYGLRAFAAAG  235 (396)
T ss_pred             cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccch-HHHHHHHHHHHhcC
Confidence            99999999887433445667769999999999999999999999999999999999999998641 11234444444445


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      +++++++||||.|+++|+|+||++.++++++...++...+....+..+.+++.+.|.++..++.+..+.+.|.+++++.+
T Consensus       236 ~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r  315 (396)
T PRK09257        236 LELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMR  315 (396)
T ss_pred             CcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            68999999999999999999999422456665556666665555555557788999999999998776666778899999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHH
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~  402 (407)
                      ++++++++.+.+.|++.+.+..+.+..|+||+|.|++++.+++.++++++||.+.|.|||+++.++++++++++++|+++
T Consensus       316 ~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~~~~~~l~~~~~V~~~p~~ri~~~~~~~~~i~~~~~~i~~~  395 (396)
T PRK09257        316 ERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTPEQVDRLREEFGVYAVGSGRINVAGLNESNIDYVAEAIAAV  395 (396)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCCHHHHHHHHHcCCEEEcCCCeEEEeeCCHHHHHHHHHHHHhh
Confidence            99999999999999987532226677899999999999988889999999999999899999877999999999999876


Q ss_pred             H
Q 015435          403 V  403 (407)
Q Consensus       403 l  403 (407)
                      +
T Consensus       396 ~  396 (396)
T PRK09257        396 L  396 (396)
T ss_pred             C
Confidence            4

>PLN02397 aspartate transaminase

Probab=100.00  E-value=7.7e-54  Score=410.54  Aligned_cols=399  Identities=78%  Similarity=1.203  Sum_probs=318.2

Q ss_pred             cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      +||.++...+.++|....+.++.+.....|+|+.|.+.++.+.|...+.+.++...+. +.....+|++..|.++||+++
T Consensus        22 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~-~~~~~~~Y~~~~G~~~LR~ai  100 (423)
T PLN02397         22 SRFEHVEPAPPDPILGVTEAFLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLL-AGSRNKEYLPIEGLAEFNKLS  100 (423)
T ss_pred             hHHHcCCcCCCChHHHHHHHHhhCCCcceEecccceeeCCCCCcccchHHHHHHHHhh-ccCCCCCCCCcCCCHHHHHHH
Confidence            4789999999999999888887777788999999975455553443455666655553 234456799999999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      ++++.+......++++|...++.+++++..++..++..+.+||+|++++|+|+.|...++.+|++++.+|+.+++++++|
T Consensus       101 a~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d  180 (423)
T PLN02397        101 AKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLD  180 (423)
T ss_pred             HHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccC
Confidence            99996654433334455333355666676655555666679999999999999999999999999999998544457899


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++.+++.+.+.+.+..++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++...+..++..+....++
T Consensus       181 ~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~  260 (423)
T PLN02397        181 FDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHE  260 (423)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCc
Confidence            99999888643233455665999999999999999999999999999999999999999985421123344444444467


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +|+++||||.|+++|||+||+++++++++..+.+...+....+..+.+++.+.|.++..++++..+.+.|.+++++++++
T Consensus       261 vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~  340 (423)
T PLN02397        261 ILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADR  340 (423)
T ss_pred             EEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999843356677666666666666655566788889999999998876666776778899999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHHHH
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      ++++++.+.+.|++.+.+..+.+..|+||||.|++++.+++.++++++||.+.++|||+++.++++.+++++++|+++++
T Consensus       341 ~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~~~~~~~Ll~~~~V~v~~~~Ri~~~~~~~~~i~~~~~~i~~~~~  420 (423)
T PLN02397        341 IISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLNKEQVDRMTKEYHIYMTRDGRISMAGLSSKNVPYLADAIHAVVT  420 (423)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCCHHHHHHHHHhCCEEECCCCeEEEeeCCHHHHHHHHHHHHHHHh
Confidence            99999999999998864334677789999999999998899999999999999999999987799999999999999986

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=5.1e-54  Score=404.29  Aligned_cols=346  Identities=18%  Similarity=0.251  Sum_probs=294.6

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCc-eEEeecCCc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNR-VTTVQCLSG  109 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~-i~~~~t~g~  109 (407)
                      .++|||++|.|   +. +.|.+..+++.+++.  .... .|++..|+++||+++++++...++..+++++ |++  |+|+
T Consensus        28 ~~vi~l~iG~P---d~-~~p~~i~~a~~~a~~--~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiiv--t~Ga   98 (393)
T COG0436          28 EDVIDLSIGEP---DF-PTPEHIIEAAIEALE--EGGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIV--TAGA   98 (393)
T ss_pred             CCEEEeCCCCC---CC-CCCHHHHHHHHHHHh--cccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--eCCH
Confidence            68999999996   55 888899999988886  2222 6889999999999999999777776677665 999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecC-CCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDP-ATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      ++++.++  ++..+.+||+|++++|.|+.|...+..+|++++.+++..+ .++.+|++++++.++  ++++++++ ++||
T Consensus        99 ~~al~~~--~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~--~ktk~i~l-n~P~  173 (393)
T COG0436          99 KEALFLA--FLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT--PKTKAIIL-NSPN  173 (393)
T ss_pred             HHHHHHH--HHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcC--ccceEEEE-eCCC
Confidence            9999999  4666899999999999999999999999999999998534 479999999999998  67888777 9999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      ||||.+++++++++|+++|++||++||+||+|.++.+++.  ..+++..+....+++|++.||||.|+++|||+||+  +
T Consensus       174 NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~--~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~--v  249 (393)
T COG0436         174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGA--EHPSILELAGARDRTITINSFSKTYGMTGWRIGWV--V  249 (393)
T ss_pred             CCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCC--CcCCHhhcCCCcceEEEEecccccccccccceeEe--e
Confidence            9999999999999999999999999999999999999863  24445444444578999999999999999999999  5


Q ss_pred             ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 015435          269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI  348 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  348 (407)
                      +++++    +.+.+...+....++++.+.|.++..+|++.+.    ....+..++.++++|+.+.+.|++.+.   +.+.
T Consensus       250 ~~~~~----l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~----~~~~~~~~~~~~~rrd~l~~~l~~~~g---~~~~  318 (393)
T COG0436         250 GPPEE----LIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS----DEVVEEMREEYRERRDLLVEALNEIGG---LSVV  318 (393)
T ss_pred             cChHH----HHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc----hHHHHHHHHHHHHHHHHHHHHHHhcCC---eeec
Confidence            66554    444454566667779999999999999998741    145677779999999999999998864   7777


Q ss_pred             c-CCceeEEecCCC-----HHHHHHhHhhccEEEcCC-------C----eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          349 I-KQIGMFTFTGLN-----SEQVAFMTKEYHIYMTSD-------G----RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       349 ~-~~~~~~~~~~~~-----~~~~~~~l~~~gi~~~~g-------g----Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      . |.|++|.|++++     .+++.++|+++||.+.||       |    |||++. +++.+++++++|.+.++..
T Consensus       319 ~~p~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~-~~~~l~~a~~rl~~~~~~~  392 (393)
T COG0436         319 KPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARFLAEY  392 (393)
T ss_pred             cCCCeeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec-CHHHHHHHHHHHHHHHHhc
Confidence            7 889999999663     467899999999999996       2    999997 6699999999999988754

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-52  Score=362.08  Aligned_cols=400  Identities=70%  Similarity=1.122  Sum_probs=382.0

Q ss_pred             cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      +.+.++...|++||+++..+++.++++..|||++|.+.|.+|+|...+.++++..++. .......|.|..|++++.+..
T Consensus        26 s~~s~V~maPpDpILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~-~~~ldKEYlpI~Gl~eF~k~s  104 (427)
T KOG1411|consen   26 SWWSHVEMAPPDPILGVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLA-SLSLDKEYLPITGLAEFNKLS  104 (427)
T ss_pred             chhhcCCCCCCCCcccHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHh-hhcccchhccccchHHHHHHH
Confidence            4688999999999999999999999999999999999999999999999999999887 345566899999999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      +++.++..+..+++++|+.+||-|||+|+.+...++..+-++..|.+|+|+|.++..++..+|..+..+..+++.+.++|
T Consensus       105 akLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld  184 (427)
T KOG1411|consen  105 AKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLD  184 (427)
T ss_pred             HHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccccccc
Confidence            99999999888999999999999999999999999998889999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++.+.+.+.+.+....++++.+.|||||+-.+.+.|++|.++.++.+.+-++|.+|++|..++.+.++++++.|...+.+
T Consensus       185 ~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~  264 (427)
T KOG1411|consen  185 FKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHE  264 (427)
T ss_pred             hHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCc
Confidence            99999999988889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      ++++-||.|.+|+.|.|+|.+.+||.+++...++.+.+....++++++||..+..++...+.+.+++.+|...++.+.++
T Consensus       265 ~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadR  344 (427)
T KOG1411|consen  265 ILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADR  344 (427)
T ss_pred             eEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHHHH
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      +..+|+.|.+.|+..+.+..|+++..+.|+|.|.+++.+++..+.+++.|.++..||||+++++...+..+.++|.++-+
T Consensus       345 i~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~peQv~~l~ke~~iYmT~dGRiS~aG~ss~nV~yLa~aih~vtk  424 (427)
T KOG1411|consen  345 IISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNPEQVDWLTKEYHIYLTKDGRISMAGLSSSNVPYLADAIHAVTK  424 (427)
T ss_pred             hhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCCHHHHHHHHhhheeeeccCceEeeccccccCCcccchhhHhHhc
Confidence            99999999999999988778999999999999999999999999999999999999999999999999999999988754


Q ss_pred             h
Q 015435          405 R  405 (407)
Q Consensus       405 ~  405 (407)
                      .
T Consensus       425 ~  425 (427)
T KOG1411|consen  425 N  425 (427)
T ss_pred             C
Confidence            3

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-51  Score=349.00  Aligned_cols=403  Identities=51%  Similarity=0.875  Sum_probs=380.8

Q ss_pred             ccccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            4 ESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      +++|..+...++..++.....|.++..+..+||++|.+.+.+|.|+..+++++....+.++....|.|-|..|++.++.+
T Consensus         3 ~s~f~~I~~a~p~~vf~~~~~y~~d~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~   82 (410)
T KOG1412|consen    3 MSFFANIPVAPPIEVFKLNASYGEDLDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKA   82 (410)
T ss_pred             cchhcCCccCChHHHHhhHHHhcccCCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhh
Confidence            36999999999999999999999999999999999999999999999999999988887666778999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcC-ceeeEEEeecCCCCC
Q 015435           84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAG-LSVKTYRYYDPATRG  162 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G-~~~~~v~~~~~~~~~  162 (407)
                      .++.+++.+...+++++++-+|+-|||+|+.+...++..+-...+|.+++|+|.++..+++.+| ..+..++.-+.++..
T Consensus        83 A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~  162 (410)
T KOG1412|consen   83 ATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKC  162 (410)
T ss_pred             hHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCce
Confidence            9999999999999999999999999999999999999887777889999999999999999999 567778876777789


Q ss_pred             cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      +|++.+...++..|...+++++.+.|||||.-.+.++|.+|++..++++++.++|-+|++|..++.+.|.|.++.+...+
T Consensus       163 ~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g  242 (410)
T KOG1412|consen  163 VDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQG  242 (410)
T ss_pred             ecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcC
Confidence            99999999999888888888877779999999999999999999999999999999999999999999999999999988


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      ...+++-||+|.+|+.+.|+|-+.++..++.....+.+.+...++..+++||..+..++.+.|..++++++|...++.+.
T Consensus       243 ~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~Ms  322 (410)
T KOG1412|consen  243 FELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMS  322 (410)
T ss_pred             CeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            88999999999999999999999989999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHH
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~  402 (407)
                      .|+.++|..|++.|..++.|+.|+++..+.|+|++.|++...++.+.+++.|++.+.|||++++++...++....+|.+.
T Consensus       323 sRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp~qV~~li~~h~vyLl~~GRInisGLN~~NveyVAkAIde~  402 (410)
T KOG1412|consen  323 SRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTPAQVDHLIENHKVYLLSDGRINISGLNMKNVEYVAKAIDET  402 (410)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCHHHHHHHHHhceEEEecCCcEeeeccccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHhh
Q 015435          403 VTRM  406 (407)
Q Consensus       403 l~~~  406 (407)
                      .+..
T Consensus       403 Vr~~  406 (410)
T KOG1412|consen  403 VRAI  406 (410)
T ss_pred             HHhh
Confidence            8754

>PLN00175 aminotransferase family protein; Provisional

Probab=100.00  E-value=4.3e-48  Score=370.01  Aligned_cols=361  Identities=16%  Similarity=0.155  Sum_probs=286.1

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      +..|+...+.+.+..+....   ...+.|||+.|.|   +. +.++.+.+++.+.+.  . ...+|++..|.++||++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~G~P---~~-~~~~~~~~~~~~~~~--~-~~~~Y~~~~G~~~Lr~aia  101 (413)
T PLN00175         32 VAKRLEKFKTTIFTQMSSLA---IKHGAINLGQGFP---NF-DGPDFVKEAAIQAIR--D-GKNQYARGFGVPELNSAIA  101 (413)
T ss_pred             hhHHhhcCCCCHHHHHHHHh---hcCCeEecCCCCC---CC-CCCHHHHHHHHHHHh--c-CCCCcCCCCCCHHHHHHHH
Confidence            34555555555544433332   2358999999997   33 445455555555554  2 3467999999999999999


Q ss_pred             HHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           86 KLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        86 ~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      +++....+..++++ +|++  |+|+++++.+++  ...+.+||+|++++|+|..+...++..|.+++.+++. ++++.+|
T Consensus       102 ~~~~~~~g~~~~~~~~I~v--t~G~~~al~~~~--~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~  176 (413)
T PLN00175        102 ERFKKDTGLVVDPEKEVTV--TSGCTEAIAATI--LGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLR-PPDFAVP  176 (413)
T ss_pred             HHHHHHhCCCCCCCCCEEE--eCCHHHHHHHHH--HHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECC-cccCCCC
Confidence            99965556666776 7999  999999999884  4457899999999999999999999999999999994 4457899


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++++.+.  ++++++++ ++||||||.+++.+++++|+++|++|+++||+||+|.++.+++.   ..++..+....++
T Consensus       177 ~~~l~~~~~--~~~k~i~i-~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~---~~s~~~~~~~~~~  250 (413)
T PLN00175        177 EDELKAAFT--SKTRAILI-NTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD---HISMASLPGMYER  250 (413)
T ss_pred             HHHHHHhcC--cCceEEEe-cCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc---ccChhhCCCCcCc
Confidence            999999887  56777766 89999999999999999999999999999999999999988642   2233333333578


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +|+++||||.|+++|+|+||+  +++     +.+...+.........+++.+.|.++..+|++.+      .++++.+++
T Consensus       251 vi~i~SfSK~~~~~G~RiG~~--v~~-----~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~------~~~~~~~~~  317 (413)
T PLN00175        251 TVTMNSLGKTFSLTGWKIGWA--IAP-----PHLTWGVRQAHSFLTFATATPMQWAAVAALRAPE------SYYEELKRD  317 (413)
T ss_pred             EEEEecchhhccCcchheeee--EeC-----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCH------HHHHHHHHH
Confidence            999999999999999999999  566     4455555555554556888999999999997653      567888999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC------C-HHHHHHhHhhccEEEcCC---------C----eEEe
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL------N-SEQVAFMTKEYHIYMTSD---------G----RISM  384 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~l~~~gi~~~~g---------g----Ris~  384 (407)
                      ++++++++.+.|++.+    +.+..|.|++|+|+++      + .+++..+++++||.+.||         +    ||++
T Consensus       318 ~~~~~~~l~~~L~~~g----~~~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~  393 (413)
T PLN00175        318 YSAKKDILVEGLKEVG----FKVYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAF  393 (413)
T ss_pred             HHHHHHHHHHHHHHCC----CeecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEE
Confidence            9999999999999886    6778899999999854      2 245667778899999885         1    9999


Q ss_pred             cCCCCCChhHHHHHHHHHHHh
Q 015435          385 AGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       385 ~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +. +++++++++++|++++++
T Consensus       394 ~~-~~e~l~~~~~rL~~~~~~  413 (413)
T PLN00175        394 CK-DEETLRAAVERMKTKLKR  413 (413)
T ss_pred             cC-CHHHHHHHHHHHHHHHhC
Confidence            96 889999999999998864

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-48  Score=346.88  Aligned_cols=338  Identities=17%  Similarity=0.159  Sum_probs=276.4

Q ss_pred             eeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCceEEeecCCcccHHH
Q 015435           36 LGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIK-DNRVTTVQCLSGTGSLR  114 (407)
Q Consensus        36 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~-~~~i~~~~t~g~t~a~~  114 (407)
                      |+.|.+   +. |.|..+.+++...+.  ....++|++..|+++|++++++.+..-++.... +++|++  |.|+.+++.
T Consensus        36 LgqGfp---~~-~~P~fv~ea~~~~~~--~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlV--T~GA~~ai~  107 (420)
T KOG0257|consen   36 LGQGFP---DF-PPPKFVTEAAKNAAK--EPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLV--TAGANEAIS  107 (420)
T ss_pred             ccCCCC---CC-CCcHHHHHHHHHHhc--cchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEE--ecCchHHHH
Confidence            999986   55 767777777766665  336789999999999999999999553444443 467999  999999999


Q ss_pred             HHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEee------cCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          115 VGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY------DPATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       115 ~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~------~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      .+  ++..+++||+|++.+|.|++|...+..+|..++.+++.      ...++.+|+++++.+++  +++++|++ |+||
T Consensus       108 ~~--~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t--~kTk~Ii~-ntPh  182 (420)
T KOG0257|consen  108 SA--LLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKIT--EKTKAIIL-NTPH  182 (420)
T ss_pred             HH--HHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhcc--CCccEEEE-eCCC
Confidence            77  46779999999999999999999999999999999986      35568899999999999  77888888 9999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      ||||.++++++|++|+++|++||+++|.||+|..+.+++.  ++..+..++++.++++.++|+||+||++|||+||+  +
T Consensus       183 NPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~--~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~--i  258 (420)
T KOG0257|consen  183 NPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGN--KHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWA--I  258 (420)
T ss_pred             CCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCC--cceeeecCCchhheEEEeccccceeeeeeeeeeee--e
Confidence            9999999999999999999999999999999999999864  23444445677789999999999999999999999  5


Q ss_pred             ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHH--hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 015435          269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYK--EWTLELKAMADRIISMRQQLFDALSARGTPGDWS  346 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  346 (407)
                      .+     +.+...+...++......+++.|.+...++.......  .-..+...+.+.++++|+.|.+.|.++|    +.
T Consensus       259 gp-----~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg----~~  329 (420)
T KOG0257|consen  259 GP-----KHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELG----LK  329 (420)
T ss_pred             ch-----HHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcC----Cc
Confidence            65     5567777777777777788888888887776543100  0002344588999999999999999998    89


Q ss_pred             cccCCceeEEecCCC-----------------HHHHHHhHhhccEEEcCCC---------------eEEecCCCCCChhH
Q 015435          347 HIIKQIGMFTFTGLN-----------------SEQVAFMTKEYHIYMTSDG---------------RISMAGLSSKTVPH  394 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~~~~gg---------------Ris~~~~~~e~i~~  394 (407)
                      +..|+|+||+|.+++                 -.+..+++++.|+.+.|+.               |+++.. +.+.++.
T Consensus       330 v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k-~~~~L~~  408 (420)
T KOG0257|consen  330 VTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCK-ADETLRK  408 (420)
T ss_pred             cccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHh-hHHHHHH
Confidence            999999999998653                 1235688899999998862               667765 6677777


Q ss_pred             HHHHHH
Q 015435          395 LTDAIH  400 (407)
Q Consensus       395 ~~~~l~  400 (407)
                      +.++++
T Consensus       409 a~e~l~  414 (420)
T KOG0257|consen  409 AIERLK  414 (420)
T ss_pred             HHHHHh
Confidence            777776

>PRK08636 aspartate aminotransferase; Provisional

Probab=100.00  E-value=5.4e-47  Score=362.51  Aligned_cols=369  Identities=15%  Similarity=0.193  Sum_probs=282.0

Q ss_pred             cccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      |.++...+.+++..+.....  ...+.++++|+.|.|   +. +.|...++++.+.+.  .....+|++..|.+++|+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~p---~~-~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lR~~i   80 (403)
T PRK08636          7 FNKIKRLPKYVFAEVNELKMAARRAGEDIIDFSMGNP---DG-PTPQHIIDKLCESAQ--KPKTHGYSVSKGIYKLRLAI   80 (403)
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCCCEEEcCCcCC---CC-CCCHHHHHHHHHHhc--CCccCCCCCCCCCHHHHHHH
Confidence            45566666665544444332  224578999999976   44 456667777766664  23467899999999999999


Q ss_pred             HHHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           85 AKLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        85 a~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      ++++...++..++++ +|++  |+|+++++.+++  ...+.+||+|++++|+|+.+...++..|++++.+++..+.++++
T Consensus        81 a~~l~~~~~~~~~~~~~I~i--t~G~~~al~~~~--~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~  156 (403)
T PRK08636         81 CNWYKRKYNVDLDPETEVVA--TMGSKEGYVHLV--QAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFEL  156 (403)
T ss_pred             HHHHHHHhCCCCCCCCeEEE--CCChHHHHHHHH--HHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCcc
Confidence            999965556666777 7999  999999999995  34478999999999999999999999999999999842345789


Q ss_pred             ChhhH----HHHHHcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH
Q 015435          164 NFQGL----LEDLRAA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF  238 (407)
Q Consensus       164 d~~~l----~~~i~~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~  238 (407)
                      |++.+    ++.+.+. ++++++++ ++||||||.++|.+++++|+++|++|+++||+||+|.++.+++.  ...++..+
T Consensus       157 d~~~l~~~l~~~~~~~~~~~~~i~~-~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~--~~~~~~~~  233 (403)
T PRK08636        157 DEDQFFENLEKALRESSPKPKYVVV-NFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGY--KTPSILEV  233 (403)
T ss_pred             ChhhhhhHHHHHHhhccCCceEEEE-eCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCC--CCCChhcC
Confidence            98865    4444432 34555555 89999999999999999999999999999999999999987642  22333333


Q ss_pred             HHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435          239 VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLEL  318 (407)
Q Consensus       239 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  318 (407)
                      ....+.+++++||||.||+||+|+||+  +++ ++    ++..+.........+++.+.|.++..+++...      +++
T Consensus       234 ~~~~~~~i~~~S~SK~~~~~GlRiG~i--v~~-~~----li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~------~~~  300 (403)
T PRK08636        234 EGAKDVAVESYTLSKSYNMAGWRVGFV--VGN-KK----LVGALKKIKSWLDYGMFTPIQVAATIALDGDQ------SCV  300 (403)
T ss_pred             CCccccEEEEEecccccCCccceeeee--eCC-HH----HHHHHHHHHHHhcccCChHHHHHHHHHHhCcH------HHH
Confidence            223356788999999999999999999  555 44    44444444433334666777887776665332      567


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC--------HHHHHHhHhhccEEEcCCC----------
Q 015435          319 KAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN--------SEQVAFMTKEYHIYMTSDG----------  380 (407)
Q Consensus       319 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~gi~~~~gg----------  380 (407)
                      +++++.++++++.+.+.|++.+    +.+..|.+|+|.|+.+.        .+++..+++++||.+.||.          
T Consensus       301 ~~~~~~~~~~~~~l~~~L~~~~----~~~~~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~i  376 (403)
T PRK08636        301 EEIRETYRKRRDVLIESFANAG----WELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYV  376 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC----CcccCCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeE
Confidence            7888999999999999999876    67778899999999763        3445677878999999971          


Q ss_pred             eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          381 RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ||+++ .+++++++++++|+++++++
T Consensus       377 Ri~~~-~~~~~l~~~~~rl~~~l~~~  401 (403)
T PRK08636        377 RIALI-ENENRIRQAARNIKKFLKEL  401 (403)
T ss_pred             EEEec-CCHHHHHHHHHHHHHHHHhh
Confidence            99998 48899999999999998764

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=100.00  E-value=4.3e-47  Score=361.98  Aligned_cols=365  Identities=14%  Similarity=0.154  Sum_probs=272.0

Q ss_pred             cccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      .+|+...+.+.+....+...  ...+.++|+|+.|.+   .. +.++.+.+++...+.  .....+|++..|.++||+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~---~~-~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~ai   77 (388)
T PRK07366          4 AQRLQPLQSNVFADMDRAKAQARAAGKELIDLSLGSS---DL-PAPAHALEAIAQSLH--DPSTHGYLLFHGTLDFREAA   77 (388)
T ss_pred             hhhhhcCCccHHHHHHHHHHHHHhcCCCeEEeCCCCC---CC-CCCHHHHHHHHHHHh--CcccCCCCCCCCCHHHHHHH
Confidence            34444444333333333222  334678999999985   22 445555555555553  23456798889999999999


Q ss_pred             HHHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           85 AKLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        85 a~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      ++++...++..++++ +|++  |+|+++++.++.  ...+.+||+|++++|+|+.+...++..|++++.+|+..+.++.+
T Consensus        78 a~~~~~~~g~~~~~~~~I~i--t~Gs~~al~~~~--~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~  153 (388)
T PRK07366         78 AQWYEQRFGLAVDPETEVLP--LIGSQEGTAHLP--LAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLP  153 (388)
T ss_pred             HHHHHHhhCCcCCCcCeEEE--CCCcHHHHHHHH--HHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCC
Confidence            999966666667777 6999  999999999985  34477999999999999999999999999999999953445678


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      |++++++.+.  ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.. ...++..+....+
T Consensus       154 d~~~l~~~~~--~~~k~i~l-~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~~~~~~~  229 (388)
T PRK07366        154 VFADIPTEVL--AQARLMVL-SYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEV-EPPSILQADPEKS  229 (388)
T ss_pred             CHHHHHHhhc--ccceEEEE-eCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCC-CCCChhhCCCCcc
Confidence            8889988775  45667666 889999999999999999999999999999999999999876421 1223333322345


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ++++++||||.||++|+|+||+  +++ ++    +.+.+.........+.+...+.++...+.+.      .+++++.++
T Consensus       230 ~vi~~~SfSK~~g~~GlRiG~~--v~~-~~----li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~------~~~l~~~~~  296 (388)
T PRK07366        230 VSIEFFTLSKSYNMGGFRIGFA--IGN-AQ----LIQALRQVKAVVDFNQYRGILNGAIAALTGP------QATVQQTVQ  296 (388)
T ss_pred             cEEEEeecccccCCcchhheeh--cCC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCc------HHHHHHHHH
Confidence            7899999999999999999999  554 44    4444544444333344333344444444332      256888999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC------H-HHHHHhHhhccEEEcCCC----------eEEecC
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN------S-EQVAFMTKEYHIYMTSDG----------RISMAG  386 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~l~~~gi~~~~gg----------Ris~~~  386 (407)
                      .++++++++.+.|++.+    +.+..|.+|+|.|+.+.      . +++..+++++||.+.||.          ||+++.
T Consensus       297 ~~~~~r~~l~~~L~~~~----~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~  372 (388)
T PRK07366        297 IFRQRRDAFINALHQIG----WPVPLPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH  372 (388)
T ss_pred             HHHHHHHHHHHHHHHCC----CcccCCCeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC
Confidence            99999999999999886    67677889999999663      2 335567788999999861          999986


Q ss_pred             CCCCChhHHHHHHHHHH
Q 015435          387 LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l  403 (407)
                       +++++++++++|++++
T Consensus       373 -~~~~l~~~l~rl~~~l  388 (388)
T PRK07366        373 -DPDILEEAVERIAAFL  388 (388)
T ss_pred             -CHHHHHHHHHHHHHhC
Confidence             7889999999998753

>PLN02187 rooty/superroot1

Probab=100.00  E-value=1.4e-46  Score=363.07  Aligned_cols=365  Identities=13%  Similarity=0.158  Sum_probs=282.4

Q ss_pred             CchhhhhHhh----hhcCCCCeeeeeeeeeecCCCcc---ccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHH
Q 015435           16 DPILGVTVAY----NKDTSPVKLNLGVGAYRTEEGKP---LVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLI   88 (407)
Q Consensus        16 ~~~~~~~~~~----~~~~~~~~i~l~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~   88 (407)
                      .+|+.+...+    ....++++|+|+.|.|   +..|   .|.++.+++.+.+.  ......|.+..|.+++|+++|+++
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~vi~l~~Gdp---~~~p~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lR~aiA~~~  121 (462)
T PLN02187         47 VTLRGVIYMLFDNCGKDVNKTILPLGHGDP---SVYPCFRTCIEAEDAVVDVLR--SGKGNSYGPGAGILPARRAVADYM  121 (462)
T ss_pred             chHhhHHHHHHhhcccCCCCCeEECCCCCC---CCCCCCCCCHHHHHHHHHHHh--CCCCCCCCCCCChHHHHHHHHHHH
Confidence            3455554433    2344689999999975   4323   24456666666564  334567999999999999999999


Q ss_pred             hCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhH
Q 015435           89 LGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGL  168 (407)
Q Consensus        89 ~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l  168 (407)
                      ....+..+++++|++  |+|+++++.+++  ...+.+||+|++++|+|+.|...++..|++++.+++..+.++++|++++
T Consensus       122 ~~~~~~~~~~~~I~i--t~G~~~al~~~~--~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l  197 (462)
T PLN02187        122 NRDLPHKLTPEDIFL--TAGCNQGIEIVF--ESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGI  197 (462)
T ss_pred             HHhcCCCCCcccEEE--eCCHHHHHHHHH--HHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHH
Confidence            655566788899999  999999999995  3447899999999999999999999999999999985445689999999


Q ss_pred             HHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEE
Q 015435          169 LEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVA  248 (407)
Q Consensus       169 ~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~  248 (407)
                      ++++.  ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+.. ..+++++
T Consensus       198 ~~~~~--~~~~~v~i-~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~--~~~s~~~~~~-~~~vi~l  271 (462)
T PLN02187        198 EAIAD--ENTVAMVV-INPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDN--PFVSMGKFAS-IVPVLTL  271 (462)
T ss_pred             HHhcC--CCcEEEEE-eCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC--CceeHHHhcc-CCcEEEE
Confidence            99876  55666666 89999999999999999999999999999999999999988642  2223333322 2469999


Q ss_pred             EecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccC--CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          249 QSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYS--SPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       249 ~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                      +||||.|++||+|+||+  ++++++..-.+.+.+.........  +++.+.|.++..++++..     .+++++.++.++
T Consensus       272 ~SfSK~f~~pGlRiG~~--v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~-----~~~l~~~~~~l~  344 (462)
T PLN02187        272 AGISKGWVVPGWKIGWI--ALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD-----KNFFAKKNKILK  344 (462)
T ss_pred             ecchhhcCCccceeEEE--EecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc-----HHHHHHHHHHHH
Confidence            99999999999999999  576554221223344444443333  457899999999987521     256888889999


Q ss_pred             HHHHHHHHHHHhcCCCCCcc-cccCCceeEEecCCC---------H-HHHHHhHhhccEEEcCCC--------eEEecCC
Q 015435          327 SMRQQLFDALSARGTPGDWS-HIIKQIGMFTFTGLN---------S-EQVAFMTKEYHIYMTSDG--------RISMAGL  387 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~---------~-~~~~~~l~~~gi~~~~gg--------Ris~~~~  387 (407)
                      ++++++.+.|++.+.   .. +..|.+++|.|+.++         . +++.+++.++||.+.||.        ||+++. 
T Consensus       345 ~~r~~l~~~L~~~~~---~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~-  420 (462)
T PLN02187        345 HNVDLVCDRLKDIPC---VVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGV-  420 (462)
T ss_pred             HHHHHHHHHHhhCCC---CcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCC-
Confidence            999999999998752   22 346789999998542         2 456778888999999972        999996 


Q ss_pred             CCCChhHHHHHHHHHHHhh
Q 015435          388 SSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       388 ~~e~i~~~~~~l~~~l~~~  406 (407)
                      +++.++.++++|+++++++
T Consensus       421 ~~e~l~~al~rL~~~l~~~  439 (462)
T PLN02187        421 EAHMLEDALERLKGFCTRH  439 (462)
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            7888999999999998753

>PTZ00377 alanine aminotransferase; Provisional

Probab=100.00  E-value=1.9e-46  Score=365.54  Aligned_cols=359  Identities=17%  Similarity=0.150  Sum_probs=274.8

Q ss_pred             CCCCeeeeeeeeeecCCC-------------ccc-------------cchhHHHHHHHHhccccccccCCCCCCcHHHHH
Q 015435           29 TSPVKLNLGVGAYRTEEG-------------KPL-------------VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNK   82 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~-------------~~~-------------~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~   82 (407)
                      ++.++|+|++|.|.+ .|             ...             |..+++++.+.+.........|++..|.+++|+
T Consensus        44 ~~~~vi~~~~G~p~~-~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~  122 (481)
T PTZ00377         44 PFDSIVYCNIGNPQA-LGQKPLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRK  122 (481)
T ss_pred             CcceeEEcCCCChhh-cCCCCchHHHHHHHHccChhhhcCccccccCCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHH
Confidence            457999999999721 00             122             446676665544411224567999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh-cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCC
Q 015435           83 LSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH-YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATR  161 (407)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~-~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~  161 (407)
                      ++++++...++..+++++|++  |+|+++++.+++.  ..+ .+||.|++++|+|+.|...++..|.+++.+++..++++
T Consensus       123 aia~~~~~~~g~~~~~~~I~i--t~Ga~~al~~~~~--~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~  198 (481)
T PTZ00377        123 AVAAFIERRDGVPKDPSDIFL--TDGASSGIKLLLQ--LLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGW  198 (481)
T ss_pred             HHHHHHHHhcCCCCChhhEEE--cCCHHHHHHHHHH--HhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCC
Confidence            999999766677778899999  9999999999953  336 69999999999999999999999999999999545567


Q ss_pred             CcChhhHHHHHHcC----CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435          162 GLNFQGLLEDLRAA----PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM  237 (407)
Q Consensus       162 ~~d~~~l~~~i~~~----~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~  237 (407)
                      ++|++++++.+...    .+++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++. ....++..
T Consensus       199 ~~d~~~l~~~l~~~~~~~~~~k~l~l-~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~-~~~~s~~~  276 (481)
T PTZ00377        199 SLDQEELEEAYEQAVRNGITPRALVV-INPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGE-KPFISFRK  276 (481)
T ss_pred             CCCHHHHHHHHHHHHhcCCCeeEEEE-ECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCC-CCcccHHH
Confidence            89999999998631    14566666 79999999999999999999999999999999999999988431 12223322


Q ss_pred             HH-H---c---CCcEEEEEecCcc-ccccCCCcceeEEee--cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435          238 FV-A---D---GGECLVAQSYAKN-MGLYGERVGALSIVC--KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       238 ~~-~---~---~~~~i~~~s~sK~-~~~~G~r~G~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                      +. .   .   ..++++++||||. +++||+|+||+  ++  .++++.    +.+...+. ...+++.++|.++..++++
T Consensus       277 ~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~--~~~~~p~~li----~~l~~~~~-~~~~~~~~~Q~a~~~~l~~  349 (481)
T PTZ00377        277 VLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYF--ELTNIPPEVR----EQIYKLAS-INLCSNVVGQLMTGLMCNP  349 (481)
T ss_pred             HHHhhcccccCCeEEEEEecCCcccccCCcCceEEE--EEeCCCHHHH----HHHHHHhh-eecCCChHHHHHHHHHhCC
Confidence            21 1   1   1268999999997 69999999999  45  245444    44444432 2346888999999999864


Q ss_pred             h----hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC-----------------HHHHH
Q 015435          308 S----TMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN-----------------SEQVA  366 (407)
Q Consensus       308 ~----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~  366 (407)
                      .    ..++.|.+...+.+++++++++++.+.|++.+.   +.+..|+||+|.|+.+.                 .+++.
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g---~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~  426 (481)
T PTZ00377        350 PREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEG---VSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCL  426 (481)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHH
Confidence            2    222335555666677789999999999988732   78889999999996431                 12356


Q ss_pred             HhHhhccEEEcCCC-----------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          367 FMTKEYHIYMTSDG-----------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       367 ~~l~~~gi~~~~gg-----------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+++++||.+.||.           ||+++ .+++++++++++|++++++
T Consensus       427 ~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~-~~~e~l~~~l~rl~~~~~~  475 (481)
T PTZ00377        427 ELLESTGIVVVPGSGFGQKPGTYHFRITIL-PPEEQIEEMVKKIKEFHES  475 (481)
T ss_pred             HHHHHcCEEEeCCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHH
Confidence            78888999999862           99999 4778999999999998864

>PRK07681 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-46  Score=359.37  Aligned_cols=362  Identities=12%  Similarity=0.145  Sum_probs=278.4

Q ss_pred             ccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      +.+|++...++.+........  ...++++|||+.|.+   .. +.+..+.+++...+.  .....+|. ..|.+++|++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p---~~-~~~~~~~~~~~~~~~--~~~~~~y~-~~G~~~lr~a   77 (399)
T PRK07681          5 LATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNP---DM-PPADFVREEMVHTAN--QKESYGYT-LSGIQEFHEA   77 (399)
T ss_pred             HhHHHhhcCccHHHHHHHHHHHhhhcCCCeEEeCCCCC---CC-CCCHHHHHHHHHHHh--ccccCCCC-CCCcHHHHHH
Confidence            445666555555555444332  234578999999985   22 334344444444433  22334454 5899999999


Q ss_pred             HHHHHhCCCCCCCCC-CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435           84 SAKLILGADSPAIKD-NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG  162 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~-~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~  162 (407)
                      +++++...++..+++ ++|++  |+|+++++.+++  ...+.+||.|++++|+|+.+...++..|++++.+|++++.++.
T Consensus        78 ia~~~~~~~g~~~~~~~~I~i--t~G~~~al~~~~--~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~  153 (399)
T PRK07681         78 VTEYYNNTHNVILNADKEVLL--LMGSQDGLVHLP--MVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFL  153 (399)
T ss_pred             HHHHHHHHhCCCCCCCCeEEE--CCCcHHHHHHHH--HHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCc
Confidence            999996656666777 79999  999999999985  4447899999999999999999999999999999995444567


Q ss_pred             cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      +|++++++.+.  ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....
T Consensus       154 ~d~~~l~~~~~--~~~k~v~l-~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~  228 (399)
T PRK07681        154 PDLELIPEEIA--DKAKMMIL-NFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGN--KPISFLSVPGAK  228 (399)
T ss_pred             CCHHHHHHhcc--ccceEEEE-eCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCC--CCCChhhCCCCc
Confidence            89999998886  45677666 89999999999999999999999999999999999999987642  122332222234


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      +++|+++||||.|+++|+|+||+  +++ ++    +.+.+.........+++.+.|.++..++++..      +++++.+
T Consensus       229 ~~~i~~~S~SK~~~~~GlRiG~~--i~~-~~----l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~------~~~~~~~  295 (399)
T PRK07681        229 EVGVEINSLSKSYSLAGSRIGYM--IGN-EE----IVRALTQFKSNTDYGVFLPIQKAACAALRNGA------AFCEKNR  295 (399)
T ss_pred             ccEEEEeecccccCCccceeEEE--ecC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCcH------HHHHHHH
Confidence            67899999999999999999999  565 44    44445545444455788889999999998753      4577788


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC----CH-HHHHHhHhhccEEEcCCC----------eEEecCC
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----NS-EQVAFMTKEYHIYMTSDG----------RISMAGL  387 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~l~~~gi~~~~gg----------Ris~~~~  387 (407)
                      +.++++++++.+.|++.+    +.+..|.+|+|.|+.+    +. +++.++++++||.+.||.          ||+++. 
T Consensus       296 ~~~~~~~~~l~~~L~~~g----~~~~~p~~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-  370 (399)
T PRK07681        296 GIYQERRDTLVDGFRTFG----WNVDKPAGSMFVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-  370 (399)
T ss_pred             HHHHHHHHHHHHHHHHCC----CcccCCCeeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC-
Confidence            899999999999999886    6777788999999865    23 456677777999998861          999985 


Q ss_pred             CCCChhHHHHHHHH
Q 015435          388 SSKTVPHLTDAIHA  401 (407)
Q Consensus       388 ~~e~i~~~~~~l~~  401 (407)
                      +++++++++++|++
T Consensus       371 ~~~~~~~~l~~l~~  384 (399)
T PRK07681        371 DEEVLQQAVENIRN  384 (399)
T ss_pred             CHHHHHHHHHHHHH
Confidence            77999999999988

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=2.3e-46  Score=358.12  Aligned_cols=360  Identities=15%  Similarity=0.165  Sum_probs=278.6

Q ss_pred             hhhhHhhhhcCCCCeeeeeeeeeecCC---CccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCC
Q 015435           19 LGVTVAYNKDTSPVKLNLGVGAYRTEE---GKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPA   95 (407)
Q Consensus        19 ~~~~~~~~~~~~~~~i~l~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~   95 (407)
                      ......+.++.++++|+|++|.|   +   ..+.|+.+.+++.+.+.  .....+|+|..|.+++|+++++++...++..
T Consensus        20 ~~~~~~~~~~~~~~~i~l~~G~p---~~~~~~~~p~~~~~a~~~~~~--~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~   94 (409)
T PLN00143         20 KFLKENFNEDDHRLAISFGFGDP---SCFECFRTTNIAEDAIVEAVR--SAKFNSYAPTGGILPARRAIADYLSNDLPYQ   94 (409)
T ss_pred             HHHHHhcccCCCCceeeCCCCCC---CCCCCCCCCHHHHHHHHHHHh--CcCCCCCCCCCCCHHHHHHHHHHHHhhcCCC
Confidence            33344445677899999999986   3   12556666666666664  3334669999999999999999997666667


Q ss_pred             CCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435           96 IKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA  175 (407)
Q Consensus        96 ~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~  175 (407)
                      +++++|++  |+|+++++.++.  ...+.+||.|++++|+|+.+...++..|.+++.+++.+++++.+|++++++++.  
T Consensus        95 ~~~~~I~i--t~G~~~al~~~~--~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--  168 (409)
T PLN00143         95 LSPDDVYL--TLGCKHAAEIII--KVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIAD--  168 (409)
T ss_pred             CCHhhEEE--ecChHHHHHHHH--HHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcc--
Confidence            78899999  999999999995  344789999999999999999999999999999998544567899999998876  


Q ss_pred             CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      ++++.+++ ++||||||.+++.+++++|+++|++|+++||+||+|.++.+++.  ...++..+ ...+++++++||||.|
T Consensus       169 ~~~~~~~~-~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~--~~~~~~~~-~~~~~vi~~~SfSK~f  244 (409)
T PLN00143        169 ENTIAMVI-INPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSK--PFVPMGLF-ASIVPVITLGSISKRW  244 (409)
T ss_pred             cCCEEEEE-ECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCC--CCcchhhh-cccCcEEEEccchhhc
Confidence            45666666 89999999999999999999999999999999999999988642  11222222 3345799999999999


Q ss_pred             cccCCCcceeEEeecCh-hhHH--HHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTE-DVAS--RVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQL  332 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (407)
                      +++|+|+||+  +++++ .+.+  .+...+...... ...++.+.|.++..++++..     ..++++.+++++++++.+
T Consensus       245 ~~pGlRvG~~--v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~~  316 (409)
T PLN00143        245 MIPGWGLGWL--VTCDPSGLLQICEIADSIKKALNP-APFPPTFIQAAIPEILEKTT-----EDFFSKTINILRAALAFC  316 (409)
T ss_pred             CCCccceEEE--EeeCchhhhhhHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHH
Confidence            9999999999  67544 2222  122333333222 22457788999998887531     145677788888889999


Q ss_pred             HHHHHhcCCCCCcc-cccCCceeEEecCCC----------HHHHHHhHhhccEEEcCCC--------eEEecCCCCCChh
Q 015435          333 FDALSARGTPGDWS-HIIKQIGMFTFTGLN----------SEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVP  393 (407)
Q Consensus       333 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~  393 (407)
                      .+.|++++.   .. ...|.+|+|.|+.+.          .+++.++++++||.+.||.        ||+++. ++++++
T Consensus       317 ~~~L~~~~~---~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~-~~~~l~  392 (409)
T PLN00143        317 YDKLKEIPC---IMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAV-EQSSLE  392 (409)
T ss_pred             HHHHhcCCC---CCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcC-CHHHHH
Confidence            999988652   22 346889999999763          2345677788999999972        999995 789999


Q ss_pred             HHHHHHHHHHHh
Q 015435          394 HLTDAIHAAVTR  405 (407)
Q Consensus       394 ~~~~~l~~~l~~  405 (407)
                      +++++|++++++
T Consensus       393 ~al~rl~~~l~~  404 (409)
T PLN00143        393 DGLGRLKSFCGR  404 (409)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999865

>PRK06348 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2e-46  Score=356.52  Aligned_cols=360  Identities=14%  Similarity=0.139  Sum_probs=282.3

Q ss_pred             cccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK   86 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~   86 (407)
                      .+++.......+.......+.  .+++|||+.|.+   .. +.++..++++.....   .....|++..|.+++|+++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~g~p---~~-~~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~~ia~   77 (384)
T PRK06348          7 AKKYQQMEVNIMAEIATLAKK--FPDIIDLSLGDP---DL-ITDESIINAAFEDAK---KGHTRYTDSGGDVELIEEIIK   77 (384)
T ss_pred             HHHHhcCCccHHHHHHHHHHh--cCCcEEcCCCCC---CC-CCCHHHHHHHHHHHh---cCCCCCCCCCCcHHHHHHHHH
Confidence            455555555555555554332  357899999975   33 334455555655553   235679999999999999999


Q ss_pred             HHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChh
Q 015435           87 LILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQ  166 (407)
Q Consensus        87 ~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  166 (407)
                      ++...++..+++++|++  |+|+++++.+++  ...+.+||+|++++|+|..+...++..|.+++.+++.+++++.+|++
T Consensus        78 ~~~~~~~~~~~~~~i~i--t~G~~~al~~~~--~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~  153 (384)
T PRK06348         78 YYSKNYDLSFKRNEIMA--TVGACHGMYLAL--QSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVK  153 (384)
T ss_pred             HHHHHhCCCCChhhEEE--cCChHHHHHHHH--HHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHH
Confidence            99666666778899999  999999999995  44478999999999999999999999999999998754456779999


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      ++++.+.  ++++++++ ++||||||.++|.+++++|+++|++||++||+||+|.++.+++.   ..++..+....++++
T Consensus       154 ~l~~~~~--~~~~~v~l-~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~~~~~vi  227 (384)
T PRK06348        154 KLEALIT--SKTKAIIL-NSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED---FVPMATLAGMPERTI  227 (384)
T ss_pred             HHHHhhC--cCccEEEE-eCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC---ccchhhcCCCcCcEE
Confidence            9999886  45677777 79999999999999999999999999999999999999987631   223322322256899


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                      +++||||.++++|+|+||+  +++     +.+.+.+.........+++.+.|.++..++.+.+      ++++++++.++
T Consensus       228 ~~~SfSK~~~l~GlRiG~~--v~~-----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~  294 (384)
T PRK06348        228 TFGSFSKDFAMTGWRIGYV--IAP-----DYIIETAKIINEGICFSAPTISQRAAIYALKHRD------TIVPLIKEEFQ  294 (384)
T ss_pred             EEecchhccCCccccceee--ecC-----HHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcH------HHHHHHHHHHH
Confidence            9999999999999999999  576     4456656656555556788899999998887543      55778889999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CHH-HHHHhHhhccEEEcCCC----------eEEecCCCCC
Q 015435          327 SMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NSE-QVAFMTKEYHIYMTSDG----------RISMAGLSSK  390 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~l~~~gi~~~~gg----------Ris~~~~~~e  390 (407)
                      ++++++.+.|+..+.   +.+..|.+|+|.|+.+     +.+ ++..+++++||.+.||.          ||+++. +++
T Consensus       295 ~r~~~~~~~L~~~~~---~~~~~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~  370 (384)
T PRK06348        295 KRLEYAYKRIESIPN---LSLHPPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTV-GIE  370 (384)
T ss_pred             HHHHHHHHHHhcCCC---ceeccCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecC-CHH
Confidence            999999999987642   6777889999999754     333 45566777899999862          999984 888


Q ss_pred             ChhHHHHHHHHH
Q 015435          391 TVPHLTDAIHAA  402 (407)
Q Consensus       391 ~i~~~~~~l~~~  402 (407)
                      +++.++++|+++
T Consensus       371 ~l~~al~~l~~~  382 (384)
T PRK06348        371 VLEEAFNRIEKM  382 (384)
T ss_pred             HHHHHHHHHHhh
Confidence            899999998764

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=100.00  E-value=2.5e-46  Score=367.64  Aligned_cols=373  Identities=17%  Similarity=0.181  Sum_probs=284.9

Q ss_pred             cccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      .+|+...+.+.+..+...++  ...+.++|+|++|.| ++.+.+.|..+++++.+++.    ...+|++..|.++||+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~----~~~~Y~~~~G~~~lReai  194 (517)
T PRK13355        120 SHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNP-APFGFRTPDEVVYDMAQQLT----DTEGYSDSKGLFSARKAI  194 (517)
T ss_pred             hHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCC-CcCCCCCCHHHHHHHHHHhh----cCCCCCCCcChHHHHHHH
Confidence            45555555554444444333  335679999999986 23344557777777777664    245699999999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      ++++...+...+++++|++  |+|+++++.+++  ...+.+||+|++++|+|+.|...++.+|.+++.+++..+.++.+|
T Consensus       195 a~~~~~~~~~~~~~~~I~i--t~G~~eal~~~~--~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d  270 (517)
T PRK13355        195 MQYAQLKGLPNVDVDDIYT--GNGVSELINLSM--SALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPD  270 (517)
T ss_pred             HHHHHhcCCCCCChhHEEE--eCcHHHHHHHHH--HHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCC
Confidence            9999554444578899999  999999999985  344789999999999999999999999999999998544457899


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++++++.  ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+. ....
T Consensus       271 ~~~l~~~~~--~~~k~i~i-~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~--~~~s~~~~~-~~~~  344 (517)
T PRK13355        271 IDDIRSKIT--SRTKAIVI-INPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGL--EHTSIASLA-PDLF  344 (517)
T ss_pred             HHHHHHhcC--cCceEEEE-ECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCC--CcccHHHhC-CCCe
Confidence            999999887  56777777 89999999999999999999999999999999999999998642  223333321 1234


Q ss_pred             EEEEEecCccccccCCCcceeEEee-cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVC-KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      +++++||||.|+++|+|+||+  ++ .++++.+.+...+.... ....+++.++|.++..+|.+.+.   +.+++.+. .
T Consensus       345 vi~~~S~SK~~~~~G~RiG~~--i~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~aL~~~~~---~~~~~~~~-~  417 (517)
T PRK13355        345 CVTFSGLSKSHMIAGYRIGWM--ILSGNKRIAKDYIEGLNMLA-NMRLCSNVPAQSIVQTALGGHQS---VKDYLVPG-G  417 (517)
T ss_pred             EEEEecchhhccCcccceEEE--EeeCchhhHHHHHHHHHHHh-cCcCCcChHHHHHHHHHhcCCcc---HHHHHHHH-H
Confidence            677899999999999999999  44 44554444555444332 23346788899999998865321   22344443 3


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC---------HHHHHHhHhhccEEEcCCC----------eEEe
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN---------SEQVAFMTKEYHIYMTSDG----------RISM  384 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~gi~~~~gg----------Ris~  384 (407)
                      ++.++++++.+.|++++.   +.+..|+|+||.|+.++         .+++.++|+++||.+.||.          ||++
T Consensus       418 ~~~~~r~~l~~~L~~~~g---~~~~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~  494 (517)
T PRK13355        418 RVYEQRELVYNALNAIPG---ISAVKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVY  494 (517)
T ss_pred             HHHHHHHHHHHHHhcCCC---cccCCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEe
Confidence            445668999999988732   78889999999997552         3567788888999999861          9999


Q ss_pred             cCCCCCChhHHHHHHHHHHHh
Q 015435          385 AGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       385 ~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +. ++++++.++++|++++++
T Consensus       495 ~~-~~~~l~~a~~rl~~~~~~  514 (517)
T PRK13355        495 LP-RLEDLEDAMDRLADFFSY  514 (517)
T ss_pred             CC-CHHHHHHHHHHHHHHHHH
Confidence            74 889999999999999875

>PRK06855 aminotransferase; Validated

Probab=100.00  E-value=7.2e-46  Score=356.83  Aligned_cols=355  Identities=13%  Similarity=0.134  Sum_probs=272.9

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      .+.+++++++|.|. ..+.+.|....+++.+.+.  .....+|++..|.+++|+++++++...++..+++++|++  |+|
T Consensus        30 ~g~~~~~~~~G~p~-~~~~~~p~~~~~a~~~~~~--~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~i--t~G  104 (433)
T PRK06855         30 LGVKITWENIGDPI-AKGEKIPDWMKEIVAELVM--DDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIF--FNG  104 (433)
T ss_pred             ccccccccccCCCc-ccCCCCCHHHHHHHHHHhh--cCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEE--cCc
Confidence            45689999999861 1122445444444444443  234567999999999999999999666677788899999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH-hhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF-TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA  187 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~-~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p  187 (407)
                      +++++.+++   ..+.+||.|++++|+|+.+.... ...|++++.+++..+.++++|++++++.+...++++++++ ++|
T Consensus       105 ~~~al~~~~---~l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l-~~P  180 (433)
T PRK06855        105 LGDAIAKIY---GLLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILL-INP  180 (433)
T ss_pred             HHHHHHHHH---HhcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEE-ECC
Confidence            999998884   35789999999999999987553 4568999999985345678999999999874344566666 799


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEE
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSI  267 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  267 (407)
                      |||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+.. ...+|+++||||.|++||+|+||+  
T Consensus       181 ~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~--~~~sl~~~~~-~~~~I~~~S~SK~~~~pGlRiG~i--  255 (433)
T PRK06855        181 DNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGK--KTVPLSEVIG-DVPGIALKGISKELPWPGSRCGWI--  255 (433)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCCHHHHcC-cCCeEEEecCccccCCCcceEEEE--
Confidence            99999999999999999999999999999999999988642  2233333322 235799999999999999999999  


Q ss_pred             eecCh---hhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435          268 VCKTE---DVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD  344 (407)
Q Consensus       268 v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  344 (407)
                      +++++   .....+.+.+..... ...+++.+.|.++..++++..    +.+++++.++.++++++.+.+.|++.+.   
T Consensus       256 i~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~~L~~~~~---  327 (433)
T PRK06855        256 EVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPE----YKNYLKERNKRYEKRSNIAYEKLKDVPG---  327 (433)
T ss_pred             EEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCc----HHHHHHHHHHHHHHHHHHHHHHHhcCCC---
Confidence            56431   111223333332222 233677889999999998753    3467888999999999999999987632   


Q ss_pred             cccccCCceeEEecCCCH--------------------------------HHHHHhHhhccEEEcCCC---------eEE
Q 015435          345 WSHIIKQIGMFTFTGLNS--------------------------------EQVAFMTKEYHIYMTSDG---------RIS  383 (407)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~l~~~gi~~~~gg---------Ris  383 (407)
                      +.+..|.||||.|+.+..                                +++..+++++||.+.||.         ||+
T Consensus       328 ~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls  407 (433)
T PRK06855        328 LKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVT  407 (433)
T ss_pred             eeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEE
Confidence            677889999999986632                                345577888999999982         999


Q ss_pred             ecCCCCCChhHHHHHHHHHHHh
Q 015435          384 MAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       384 ~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ++..+++++++++++|++++++
T Consensus       408 ~~~~~~~~i~~~~~~l~~~~~~  429 (433)
T PRK06855        408 LLERDEEKFEWIYQTLAEKIEE  429 (433)
T ss_pred             ECCCcHHHHHHHHHHHHHHHHH
Confidence            9976889999999999999875

>PRK09148 aminotransferase; Validated

Probab=100.00  E-value=5e-46  Score=355.67  Aligned_cols=367  Identities=17%  Similarity=0.203  Sum_probs=278.4

Q ss_pred             ccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      -|+|+....++.+..+.....  ++.+.+.|||+.|.+   .. +.+....+++.+.+.  .....+|++..|.+++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p---~~-~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~a   76 (405)
T PRK09148          3 EFHRIRRLPPYVFEQVNRLKAAARAAGADIIDLGMGNP---DL-PTPQHIVDKLCETAQ--DPRTHRYSASKGIPGLRRA   76 (405)
T ss_pred             chhhhhcCCccHHHHHHHHHHHHHhcCCCeEEcCCCCC---CC-CCCHHHHHHHHHHHc--CcccCCCCCCCCCHHHHHH
Confidence            356666666665554433332  234578999999975   32 335566666555543  2345789999999999999


Q ss_pred             HHHHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435           84 SAKLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG  162 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~  162 (407)
                      +++++....+..++++ +|++  |+|+++++.+++.  ..+.+||+|++++|+|+.+...++..|.+++.+++..+..  
T Consensus        77 ia~~~~~~~g~~~~~~~~I~i--t~G~~~al~~~~~--~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~--  150 (405)
T PRK09148         77 QAAYYARRFGVKLNPDTQVVA--TLGSKEGFANMAQ--AITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE--  150 (405)
T ss_pred             HHHHHHHHhCCCCCCCCcEEE--cCChHHHHHHHHH--HhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC--
Confidence            9999954445556666 8999  9999999999953  4478999999999999999999999999999999843322  


Q ss_pred             cChhhHHHHHHcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc
Q 015435          163 LNFQGLLEDLRAA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD  241 (407)
Q Consensus       163 ~d~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~  241 (407)
                       .++++++.+... ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+...
T Consensus       151 -~~~~l~~~~~~~~~~~~~v~l-~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~--~~~s~~~~~~~  226 (405)
T PRK09148        151 -FFPALERAVRHSIPKPIALIV-NYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGN--PPPSVLQVPGA  226 (405)
T ss_pred             -CccCHHHHHhhccccceEEEE-eCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCC--CCCChhhCCCc
Confidence             344555555422 44566665 89999999999999999999999999999999999999987542  12223222222


Q ss_pred             CCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          242 GGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       242 ~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      .+.+++++||||.|++||+|+||+  +++ +    .+.+.+...+.....+++.+.|.++..++++.+      +++++.
T Consensus       227 ~~~~i~~~SfSK~~~~pGlR~G~~--v~~-~----~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~------~~~~~~  293 (405)
T PRK09148        227 KDVTVEFTSMSKTFSMAGWRMGFA--VGN-E----RLIAALTRVKSYLDYGAFTPIQVAATAALNGPQ------DCIAEM  293 (405)
T ss_pred             cCcEEEEeccccccCCcchheeee--eCC-H----HHHHHHHHHHHHhccCCChHHHHHHHHHHhCcH------HHHHHH
Confidence            356788999999999999999999  554 4    455555555544455778889999999997542      567888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC--------HHHHHHhHhhccEEEcCCC----------eEE
Q 015435          322 ADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN--------SEQVAFMTKEYHIYMTSDG----------RIS  383 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~gi~~~~gg----------Ris  383 (407)
                      ++.++++++++.+.|+..+    +.+..|.+|+|.|+.+.        .++...+++++||.+.||.          ||+
T Consensus       294 ~~~~~~~r~~l~~~L~~~~----~~~~~p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~  369 (405)
T PRK09148        294 RELYKKRRDVLVESFGRAG----WDIPPPAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIA  369 (405)
T ss_pred             HHHHHHHHHHHHHHHHHcC----CccCCCCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEE
Confidence            8999999999999999876    66677899999998652        2445667778999999862          999


Q ss_pred             ecCCCCCChhHHHHHHHHHHHhh
Q 015435          384 MAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       384 ~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++. +.+.+..++++|.++++++
T Consensus       370 ~~~-~~~~l~~al~~l~~~l~~~  391 (405)
T PRK09148        370 LVE-NEQRIRQAARNIKRFLSSA  391 (405)
T ss_pred             ecC-CHHHHHHHHHHHHHHHHHH
Confidence            984 7899999999999998764

>PRK06207 aspartate aminotransferase; Provisional

Probab=100.00  E-value=5.7e-46  Score=355.00  Aligned_cols=346  Identities=15%  Similarity=0.169  Sum_probs=271.4

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCC-CceEEeecCC
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKD-NRVTTVQCLS  108 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~-~~i~~~~t~g  108 (407)
                      ..+.|+|+.|.+   +..+.++.+.+++.+.+.  .....+|++..|.+++|+++++++....+..+++ ++|++  |+|
T Consensus        38 ~~~~i~l~~g~~---~~~~p~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~i--t~G  110 (405)
T PRK06207         38 PGRPVDFSHGDV---DAHEPTPGAFELFSAGVE--RGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELII--TPG  110 (405)
T ss_pred             CCCceecCCcCC---CCCCCCHHHHHHHHHHHh--cCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE--eCC
Confidence            468899999986   321334556666666654  2234679889999999999999996655655677 89999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec---CCCCCcChhhHHHHHHcCCCCcEEEEec
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD---PATRGLNFQGLLEDLRAAPSGAIVLLHA  185 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~---~~~~~~d~~~l~~~i~~~~~~~~v~i~~  185 (407)
                      +++++.+++  ...+.+||+|++++|+|+.+...++..|.+++.++++.   +.++++|++++++.+.  ++++++++ +
T Consensus       111 a~~al~~~~--~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~--~~~k~v~l-~  185 (405)
T PRK06207        111 TQGALFLAV--AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK--AGVRVFLF-S  185 (405)
T ss_pred             cHHHHHHHH--HHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh--hcCeEEEE-C
Confidence            999999985  44478999999999999999999999999999999841   2357899999999887  45666666 9


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCccee
Q 015435          186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGAL  265 (407)
Q Consensus       186 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  265 (407)
                      +||||||.+++.+++++|+++|++||++||+||+|.++.+++..  ..++..+....+++++++||||.|+++|+|+||+
T Consensus       186 ~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~--~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~i  263 (405)
T PRK06207        186 NPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTS--YTHLRALPIDPENVITIMGPSKTESLSGYRLGVA  263 (405)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC--CCchhcCCCCcCcEEEEecchhhccCcccceEEE
Confidence            99999999999999999999999999999999999999886421  1222222223578999999999999999999999


Q ss_pred             EEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 015435          266 SIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDW  345 (407)
Q Consensus       266 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  345 (407)
                        +++ +    .+.+.+.........+.+.+.|.++..++++..      .++++.+++++++++.+.+.|++.+.   +
T Consensus       264 --i~~-~----~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~~r~~l~~~L~~~~~---~  327 (405)
T PRK06207        264 --FGS-P----AIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPD------GWMKDRIARHQAIRDDLLRVLRGVEG---V  327 (405)
T ss_pred             --EcC-H----HHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHhcCCC---c
Confidence              555 4    455555555544555677788999998887542      23455666777889999999987632   6


Q ss_pred             ccccCCceeEEecCCC-----HH-HHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          346 SHIIKQIGMFTFTGLN-----SE-QVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       346 ~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+..|.+|+|.|+.+.     .+ +...+++++||.+.||.          ||+++. +++++++++++|++++++.
T Consensus       328 ~~~~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~-~~~~l~~al~rl~~~l~~~  403 (405)
T PRK06207        328 FVRAPQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ-DHAAAVAAAERIAQLIERY  403 (405)
T ss_pred             eecCCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence            7778899999999763     33 45566667899999962          999996 7899999999999998764

>PRK08068 transaminase; Reviewed

Probab=100.00  E-value=5.4e-46  Score=354.39  Aligned_cols=361  Identities=16%  Similarity=0.184  Sum_probs=272.1

Q ss_pred             ccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            8 GKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      +++.......+....+.+.  ...+.++|+|+.|.|   +. +.++.+.+.+...+.  .....+|+|..|.++||++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p---~~-~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~aia   80 (389)
T PRK08068          7 ELLKQLPKQFFASLVAKVNKKVAEGHDVINLGQGNP---DQ-PTPEHIVEALQEAAE--NPANHKYSPFRGYPFLKEAAA   80 (389)
T ss_pred             hHhhhcCccHHHHHHHHHHHHHhcCCCeEEecCCCC---CC-CCCHHHHHHHHHHHh--CCCCCCCCCCCCCHHHHHHHH
Confidence            4454545555544444332  223468999999975   43 444445555545543  334567988999999999999


Q ss_pred             HHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           86 KLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        86 ~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      +++....+..++++ +|++  |+|+++++..++  ...+.+||+|++++|+|..+...++..|++++.+|++++.++.+|
T Consensus        81 ~~~~~~~g~~~~~~~~i~i--t~G~~~~l~~~~--~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d  156 (389)
T PRK08068         81 DFYKREYGVTLDPETEVAI--LFGGKAGLVELP--QCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPD  156 (389)
T ss_pred             HHHHHHhCCCCCCCccEEE--cCCcHHHHHHHH--HHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCC
Confidence            99965455556677 8999  999999999884  444789999999999999999999999999999999534457789


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++++.+.  ++++++++ ++||||||++++.+++++|+++|++|+++||+||+|.++.+++.  ...+........++
T Consensus       157 ~~~l~~~~~--~~~~~v~l-~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~--~~~s~~~~~~~~~~  231 (389)
T PRK08068        157 YTKIPEEVA--EKAKLMYL-NYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQ--KPVSFLQTPGAKDV  231 (389)
T ss_pred             HHHHHHhcc--ccceEEEE-ECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCC--CCcChhhCCCccCC
Confidence            999998886  45667666 89999999999999999999999999999999999998887531  12222222223457


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +++++||||.||++|+|+||+  +++ ++    +.+.+.........+.+...|.++..++.+..      +++++++++
T Consensus       232 ~i~~~S~SK~~g~~GlRiG~~--~~~-~~----l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~  298 (389)
T PRK08068        232 GIELYTLSKTFNMAGWRVAFA--VGN-ES----VIEAINLLQDHLFVSLFGAIQDAAIEALLSDQ------SCVAELVAR  298 (389)
T ss_pred             EEEEecchhccCCccceeEeE--ecC-HH----HHHHHHHHHhhccCCCChHHHHHHHHHHhCcH------HHHHHHHHH
Confidence            899999999999999999999  454 44    44445445444444666667887777775432      557788899


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC----CHHH-HHHhHhhccEEEcCCC----------eEEecCCCC
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----NSEQ-VAFMTKEYHIYMTSDG----------RISMAGLSS  389 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~l~~~gi~~~~gg----------Ris~~~~~~  389 (407)
                      ++++++++.+.|++.+    +.+..+.+|+|.|+.+    +.+. ...+++++||.+.||.          ||+++. ++
T Consensus       299 ~~~~r~~~~~~L~~~g----~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~  373 (389)
T PRK08068        299 YESRRNAFISACREIG----WEVDAPKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT-DE  373 (389)
T ss_pred             HHHHHHHHHHHHHHCC----CcccCCCeeEEEEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC-CH
Confidence            9999999999999887    6777889999999855    3444 4566666899998851          999985 66


Q ss_pred             CChhHHHHHHHH
Q 015435          390 KTVPHLTDAIHA  401 (407)
Q Consensus       390 e~i~~~~~~l~~  401 (407)
                      +.+..++++|++
T Consensus       374 ~~l~~al~~l~~  385 (389)
T PRK08068        374 ERLREAVERIGK  385 (389)
T ss_pred             HHHHHHHHHHHH
Confidence            777888877765

>PLN02656 tyrosine transaminase

Probab=100.00  E-value=1.2e-45  Score=353.58  Aligned_cols=365  Identities=15%  Similarity=0.134  Sum_probs=282.2

Q ss_pred             chhhhhHhhh-hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCC
Q 015435           17 PILGVTVAYN-KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPA   95 (407)
Q Consensus        17 ~~~~~~~~~~-~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~   95 (407)
                      +.+..+..+. +.++.++|+|++|.|......+.|+...+++.+.+.  .....+|++..|.+++|+++++++...++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~   93 (409)
T PLN02656         16 ILSLLMESIDDEENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQ--SNKFNGYAPTVGLPQARRAIAEYLSRDLPYK   93 (409)
T ss_pred             HHHHHHHhccccccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHh--cCCCCCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            3445554442 456789999999987110112556666666666665  3345679999999999999999996655666


Q ss_pred             CCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435           96 IKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA  175 (407)
Q Consensus        96 ~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~  175 (407)
                      +++++|++  |+|+++++.+++.  ..+.+||+|++++|+|+.+.......|++++.+++..++++.+|++++++.+.  
T Consensus        94 ~~~~~i~~--t~G~~~al~~~~~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~--  167 (409)
T PLN02656         94 LSLDDVFI--TSGCTQAIDVALS--MLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALAD--  167 (409)
T ss_pred             CCcccEEE--eCChHHHHHHHHH--HHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhc--
Confidence            78899999  9999999999853  34789999999999999999999999999999998534567899999999886  


Q ss_pred             CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+ ....++|+++||||.|
T Consensus       168 ~~~~~v~l-~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~SfSK~f  243 (409)
T PLN02656        168 QNTVALVI-INPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSN--PFVPMGVF-GSIVPVLTLGSLSKRW  243 (409)
T ss_pred             cCceEEEE-ECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CcccHHHh-cccCcEEEEcccchhc
Confidence            55677666 88999999999999999999999999999999999999988642  12233222 3346799999999999


Q ss_pred             cccCCCcceeEEeecChhhH---HHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVA---SRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQL  332 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (407)
                      +++|+|+||+  ++++++..   ..++..+...... ..+++.+.|.++..++++..     ..++++.+++++++++.+
T Consensus       244 ~~pGlRiG~~--i~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~~-----~~~~~~~~~~~~~~r~~~  315 (409)
T PLN02656        244 IVPGWRLGWF--VTTDPSGSFRDPKIVERIKKYFDI-LGGPATFIQAAVPTILEQTD-----ESFFKKTINILKQSSDIC  315 (409)
T ss_pred             cCcceeEEEE--EEeCcccccccHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHH
Confidence            9999999999  67532100   1233334333332 23678889999999997532     256778888999999999


Q ss_pred             HHHHHhcCCCCCcc-cccCCceeEEecCCC---------H-HHHHHhHhhccEEEcCCC--------eEEecCCCCCChh
Q 015435          333 FDALSARGTPGDWS-HIIKQIGMFTFTGLN---------S-EQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVP  393 (407)
Q Consensus       333 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~---------~-~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~  393 (407)
                      .+.|+..+.   +. +..|.+|+|.|+.++         . +++.++++++||.+.||.        ||+++. ++++++
T Consensus       316 ~~~L~~~~~---~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~-~~e~l~  391 (409)
T PLN02656        316 CDRIKEIPC---ITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAA-DPSSLE  391 (409)
T ss_pred             HHHHhhCCC---CcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCC-CHHHHH
Confidence            999988742   33 457899999998652         2 346678888999999972        999996 889999


Q ss_pred             HHHHHHHHHHHh
Q 015435          394 HLTDAIHAAVTR  405 (407)
Q Consensus       394 ~~~~~l~~~l~~  405 (407)
                      +++++|++++++
T Consensus       392 eal~rl~~~~~~  403 (409)
T PLN02656        392 EALGRIKSFYLR  403 (409)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998864

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=100.00  E-value=7.4e-46  Score=353.04  Aligned_cols=361  Identities=16%  Similarity=0.168  Sum_probs=273.5

Q ss_pred             ccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            8 GKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      .|+...+.+.+......+.  ++.++++++|+.|.+   .. +.++.+.+++.+.+.  .....+|++..|.+++|++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~-~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~~ia   77 (383)
T TIGR03540         4 DRIENLPPYLFAEIDKKKAEKKAEGVDVISLGIGDP---DL-PTPKHIVEALCKAAE--NPENHRYPSYEGMLAYRQAVA   77 (383)
T ss_pred             hhhccCChhHHHHHHHHHHHHHhcCCCeEEeCCCCC---CC-CCCHHHHHHHHHHHh--CCCCCCCCCCCCCHHHHHHHH
Confidence            3444444444333333332  345679999999985   32 334455555555543  234577988999999999999


Q ss_pred             HHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           86 KLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        86 ~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      +++...++..++++ +|++  |+|+++++.++.  ...+.+||.|++++|+|+.+...++..|.+++.+|++++.++.+|
T Consensus        78 ~~~~~~~~~~~~~~~~vi~--t~G~~~~l~~~~--~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d  153 (383)
T TIGR03540        78 DWYKRRFGVELDPETEVLS--LIGSKEGIAHIP--LAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPD  153 (383)
T ss_pred             HHHHHhhCCCCCCCCeEEE--CCCcHHHHHHHH--HHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccC
Confidence            99965445555555 6888  999999999995  334789999999999999999999999999999999544456789


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++++.+.  ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....++
T Consensus       154 ~~~l~~~~~--~~~~~v~i-~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~--~~~~~~~~~~~~~~  228 (383)
T TIGR03540       154 FDAIPEDIA--KKAKLMFI-NYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGY--KAPSFLEVDGAKDV  228 (383)
T ss_pred             HHHHHhhcc--ccceEEEE-eCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCC--CCcCcccCCCcccC
Confidence            999998886  45677777 79999999999999999999999999999999999999887542  22222222222357


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +++++||||.||++|+|+||+  +++ ++    +.+.+.........+++.+.|.++..++.+..      ++++++++.
T Consensus       229 ~i~~~SfSK~~g~~GlRiG~~--i~~-~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~  295 (383)
T TIGR03540       229 GIEFHSLSKTYNMTGWRIGMA--VGN-AD----LIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQ------DVVKEIRKI  295 (383)
T ss_pred             EEEEEecccccCCccceeeEE--eCC-HH----HHHHHHHHHHhcccCCChHHHHHHHHHHhCCH------HHHHHHHHH
Confidence            899999999999999999999  454 44    44444444433444667788898888887653      567788899


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC----H-HHHHHhHhhccEEEcCC--------C--eEEecCCCC
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN----S-EQVAFMTKEYHIYMTSD--------G--RISMAGLSS  389 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~gi~~~~g--------g--Ris~~~~~~  389 (407)
                      ++++++.+.+.|++.+    +.+..+.+|+|.|+.+.    . +++..+++++||.+.||        +  ||+++. ++
T Consensus       296 ~~~~~~~~~~~L~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~  370 (383)
T TIGR03540       296 YQRRRDLLLEALKKIG----IDVEKPKATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV-PD  370 (383)
T ss_pred             HHHHHHHHHHHHHhCC----CEecCCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC-CH
Confidence            9999999999999886    77778889999998652    3 44567777899999986        1  999985 77


Q ss_pred             CChhHHHHHHHH
Q 015435          390 KTVPHLTDAIHA  401 (407)
Q Consensus       390 e~i~~~~~~l~~  401 (407)
                      ++++.++++|++
T Consensus       371 ~~l~~~l~~l~~  382 (383)
T TIGR03540       371 ERLEEAVARIKK  382 (383)
T ss_pred             HHHHHHHHHHhh
Confidence            778888877764

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=100.00  E-value=1.4e-45  Score=352.44  Aligned_cols=362  Identities=13%  Similarity=0.128  Sum_probs=275.6

Q ss_pred             ccccCCCCCchhhhhHhhh---hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            8 GKIVRAPEDPILGVTVAYN---KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      +++.+.+++.+..+...++   +..+.++|+|+.|.+   +. +.++...+++.+.+.    ...+|++..|.+++|+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p---~~-~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~i   74 (396)
T PRK09147          3 PRLDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEP---KH-PTPAFIKDALAANLD----GLASYPTTAGLPALREAI   74 (396)
T ss_pred             chhhcCCcchHHHHHHHHHhhhhccCCCeEecCCCCC---CC-CCCHHHHHHHHHHhh----hhcCCCCCCCCHHHHHHH
Confidence            3555566666655555443   345789999999986   33 334444444433332    357798899999999999


Q ss_pred             HHHHhCCCCCC-CCCC-ceEEeecCCcccHHHHHHHHHHhhcC---CCeEEecCCCCCChHHHHhhcCceeeEEEeecCC
Q 015435           85 AKLILGADSPA-IKDN-RVTTVQCLSGTGSLRVGAEFLARHYH---QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA  159 (407)
Q Consensus        85 a~~~~~~~~~~-~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~---gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~  159 (407)
                      ++++...++.. ++++ +|++  |+|+++++.++.  ...+.+   ||.|++++|+|..+...++..|++++.+|++.+.
T Consensus        75 a~~~~~~~g~~~~~~~~~i~i--t~G~~~al~~~~--~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~  150 (396)
T PRK09147         75 AAWLERRYGLPALDPATQVLP--VNGSREALFAFA--QTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPAN  150 (396)
T ss_pred             HHHHHHHhCCCcCCccceEEE--CCChHHHHHHHH--HHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccc
Confidence            99996555655 6664 8999  999999999985  344678   8999999999999999999999999999995444


Q ss_pred             CCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH
Q 015435          160 TRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV  239 (407)
Q Consensus       160 ~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~  239 (407)
                      ++++|++++++.+.  ++++++++ ++||||||.+++.+++++|+++|++|+++||+||+|.++.+++............
T Consensus       151 ~~~~d~~~l~~~~~--~~~k~i~l-~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  227 (396)
T PRK09147        151 NFAPDFDAVPAEVW--ARTQLLFV-CSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAA  227 (396)
T ss_pred             cCccCHHHHHHHHh--hccEEEEE-cCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhcc
Confidence            57899999998876  45677776 8999999999999999999999999999999999999998764211111111111


Q ss_pred             ----HcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHH
Q 015435          240 ----ADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWT  315 (407)
Q Consensus       240 ----~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  315 (407)
                          ...+++++++||||.|+++|+|+||+  +++ ++    +.+.+.........+++.+.|.++...+.+.       
T Consensus       228 ~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~--~~~-~~----l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~-------  293 (396)
T PRK09147        228 ELGRDDFKRLVVFHSLSKRSNVPGLRSGFV--AGD-AA----LLKKFLLYRTYHGCAMPPAVQAASIAAWNDE-------  293 (396)
T ss_pred             ccCccccccEEEEeccccccCCccceeeee--cCC-HH----HHHHHHHHhhhcccCCCHHHHHHHHHHhcch-------
Confidence                12368999999999999999999999  565 44    4444444443334467778888877777543       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC---HHHHHHhHhhccEEEcCC-------------
Q 015435          316 LELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN---SEQVAFMTKEYHIYMTSD-------------  379 (407)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~g-------------  379 (407)
                      +++.+.++.++++++.+.+.|++.     +.+..|.+|+|.|+.+.   .+++..+++++||.+.||             
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~L~~~-----~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~  368 (396)
T PRK09147        294 AHVRENRALYREKFDAVTPILAPV-----LDVQLPDAGFYLWAKVPGDDTEFARRLYADYNVTVLPGSYLAREAHGVNPG  368 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCCeeEEEEEECCCCHHHHHHHHHHhCCEEEeCCccccccccCCCCC
Confidence            457788899999999999998763     35567889999999763   345667777789999774             


Q ss_pred             -C--eEEecCCCCCChhHHHHHHHHHHH
Q 015435          380 -G--RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       380 -g--Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                       +  ||+++. +++++++++++|+++++
T Consensus       369 ~~~iRi~~~~-~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        369 AGRVRIALVA-PLAECVEAAERIVDFCR  395 (396)
T ss_pred             CCeEEEEecC-CHHHHHHHHHHHHHHhc
Confidence             1  999986 78899999999998774

>PRK07682 hypothetical protein; Validated

Probab=100.00  E-value=8.5e-46  Score=352.00  Aligned_cols=341  Identities=16%  Similarity=0.163  Sum_probs=270.9

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCC-ceEEeecCCc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDN-RVTTVQCLSG  109 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t~g~  109 (407)
                      ++.|+|+.|.+   +. +.+....+++.+.+.   ....+|.+..|.+++|+++++++....+..++++ +|++  |+|+
T Consensus        20 ~~~i~l~~~~~---~~-~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~--t~G~   90 (378)
T PRK07682         20 EGVISLGVGEP---DF-VTPWNVREASIRSLE---QGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIV--TVGA   90 (378)
T ss_pred             CCeEEeCCCCC---CC-CCCHHHHHHHHHHHh---cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCh
Confidence            57899999986   22 333344455544443   2356798889999999999999965445556665 7999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++.+++  ...+.+||+|++++|+|+.+...++..|.+++.++...++++++|++++++++.  ++++++++ ++|||
T Consensus        91 ~~al~~~~--~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~v~~-~~p~N  165 (378)
T PRK07682         91 SQALDVAM--RAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAIT--AKTKAILL-CSPNN  165 (378)
T ss_pred             HHHHHHHH--HHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcC--cccEEEEE-ECCCC
Confidence            99999985  444789999999999999999999999999999987433457899999999886  45667666 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||.+++.+++++|+++|++|++++|+||+|.++.+++.   ..++..+....+++++++||||.|+++|+|+||+  ++
T Consensus       166 PtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~--~~  240 (378)
T PRK07682        166 PTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA---YTSFASIKGMRERTILISGFSKGFAMTGWRLGFI--AA  240 (378)
T ss_pred             CcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC---CCChhhcccccCCEEEEecCcccccChhhhhhhh--hc
Confidence            999999999999999999999999999999999998642   2223333333468999999999999999999999  45


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      + ++    +.+.+.........+++.+.|.++..+|++..      .++++++++++++++++.+.|++.+    +.+..
T Consensus       241 ~-~~----~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~L~~~~----~~~~~  305 (378)
T PRK07682        241 P-VY----FSEAMLKIHQYSMMCAPTMAQFAALEALRAGN------DDVIRMRDSYRKRRNFFVTSFNEIG----LTCHV  305 (378)
T ss_pred             C-HH----HHHHHHHHHHhhccCCCHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHHHCC----CccCC
Confidence            5 44    44444444444445778889999999998653      3467888999999999999999887    67788


Q ss_pred             CCceeEEecCC-----CHH-HHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          350 KQIGMFTFTGL-----NSE-QVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       350 ~~~~~~~~~~~-----~~~-~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |.+++|.|+.+     +.+ +...+++++||.+.||.          ||+++. +++++++++++|+++++++
T Consensus       306 p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~  377 (378)
T PRK07682        306 PGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRFVENK  377 (378)
T ss_pred             CCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence            89999999843     344 45566777899999861          999997 7899999999999999875

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=2.2e-45  Score=352.63  Aligned_cols=353  Identities=14%  Similarity=0.169  Sum_probs=277.4

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      +.++|+|++|.|..--..+.++++.+++.+.+.  ......|++..|.+++|+++++++...++..+++++|++  |+|+
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~--~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~i--t~G~  126 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALR--SGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYL--TAGC  126 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHH--cCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEE--eCCH
Confidence            679999999986110012445666666666664  333457988899999999999999666666778899999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++.+++..  .+.+||+|++++|+|+.|.......|++++.+++..+.++.+|++.+++.++  ++++++++ ++|||
T Consensus       127 ~~al~l~~~~--l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~i-~~P~N  201 (430)
T PLN00145        127 AQAIEIIMSV--LAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALAD--ENTVAMVI-INPNN  201 (430)
T ss_pred             HHHHHHHHHH--hcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhC--cCceEEEE-eCCCC
Confidence            9999999543  3679999999999999999999999999999997545568899999999887  56777777 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+ ....++++++||||.|++||+|+||+  ++
T Consensus       202 PtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~--~~~~~~~~-~~~~~vi~~~S~SK~~~~pG~RlG~i--v~  276 (430)
T PLN00145        202 PCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSK--PFVPMGVF-GEVAPVLTLGSISKRWVVPGWRLGWI--AT  276 (430)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCC--Cccchhhh-cccCcEEEEeccccccCCCCeeEEEE--EE
Confidence            999999999999999999999999999999999988642  22333333 23568999999999999999999999  56


Q ss_pred             cCh-hhHHH--HHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 015435          270 KTE-DVASR--VESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS  346 (407)
Q Consensus       270 ~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  346 (407)
                      +++ .+.+.  +...+.... ....+++.+.|.++..++++..     .+++++.++.++++++.+.+.|++.+.   +.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~L~~~~g---~~  347 (430)
T PLN00145        277 CDPNGILKETKVVDSIRNYL-NISTDPATFVQGAIPQIIANTK-----EEFFTKTLGLLKETADICYEKIKEIKC---IT  347 (430)
T ss_pred             ecchhhhhhhHHHHHHHHHh-cccCCCCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHHHHHHhcCCC---CC
Confidence            433 22221  233333333 2333678889999998887531     256778889999999999999988632   55


Q ss_pred             c-ccCCceeEEecCCC----------HHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          347 H-IIKQIGMFTFTGLN----------SEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       347 ~-~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      . ..|.+++|+|+.++          .+++.++++++||.+.||.        ||+++. ++++++.++++|++++++.
T Consensus       348 ~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~-~~~~l~~al~rl~~~~~~~  425 (430)
T PLN00145        348 CPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAI-DPPSLEDGLERLKSFCLRH  425 (430)
T ss_pred             CCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence            4 47899999998653          2456788888999999972        999995 8888999999999998753

>PRK05942 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-45  Score=351.59  Aligned_cols=341  Identities=17%  Similarity=0.205  Sum_probs=266.3

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCC-ceEEeecC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDN-RVTTVQCL  107 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t~  107 (407)
                      .+.++|+|+.|.|   .. +.|....+++...+.  ......|+++.|.++||+++++++....+..++++ +|++  |+
T Consensus        33 ~g~~~i~l~~g~p---~~-~~p~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~v--t~  104 (394)
T PRK05942         33 QGLDLIDLGMGNP---DG-AAPQPVIEAAIAALA--DPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALP--LL  104 (394)
T ss_pred             cCCCeEEcCCCCC---CC-CCCHHHHHHHHHHHh--CCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEE--cc
Confidence            4567999999975   44 445567777766664  23457798899999999999999965445556667 5888  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA  187 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p  187 (407)
                      |+++++.+++  ...+.+||+|++++|+|+.+...+...|++++.++++.+.++.+|++++++.+.  ++++++++ ++|
T Consensus       105 G~~~al~~~~--~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--~~~k~i~l-~~P  179 (394)
T PRK05942        105 GSKEGLTHLA--LAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVA--QQAKILYF-NYP  179 (394)
T ss_pred             ChHHHHHHHH--HHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcc--ccceEEEE-cCC
Confidence            9999999985  444789999999999999999999999999999998434456799999999886  56777777 799


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEE
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSI  267 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  267 (407)
                      |||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+....+.+++++||||.|+++|+|+||+  
T Consensus       180 ~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~--~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i--  255 (394)
T PRK05942        180 SNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQ--PTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFV--  255 (394)
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCC--CCChhhCCCccccEEEEecchhccCChhhheeee--
Confidence            999999999999999999999999999999999999875421  2223222222356789999999999999999999  


Q ss_pred             eecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435          268 VCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH  347 (407)
Q Consensus       268 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  347 (407)
                      +++ ++    +.+.+.........+++...|.++..+++..+      +++++.+++++++++++.+.|++.+    +.+
T Consensus       256 ~~~-~~----l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~L~~~~----~~~  320 (394)
T PRK05942        256 VGN-RH----IIQGLRTLKTNLDYGIFSALQKAAETALQLPD------SYLQQVQERYRTRRDFLIQGLGELG----WNI  320 (394)
T ss_pred             ecC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHHHCC----Cee
Confidence            455 44    44555544443344677788888888886432      5677888999999999999998876    677


Q ss_pred             ccCCceeEEecCC----C-HHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHH
Q 015435          348 IIKQIGMFTFTGL----N-SEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       348 ~~~~~~~~~~~~~----~-~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~  402 (407)
                      ..+.+++|.|+.+    + .+++.++++++||.+.||.          ||+++. +.+.+..++++|+++
T Consensus       321 ~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~  389 (394)
T PRK05942        321 PPTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA-DCDRLGEALDRLKQA  389 (394)
T ss_pred             cCCCeeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHh
Confidence            7888999999865    2 3446678888999998851          999974 556666666666553

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-45  Score=351.15  Aligned_cols=363  Identities=14%  Similarity=0.159  Sum_probs=272.6

Q ss_pred             ccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      |.+++....++.........+  ...+.++++|+.|.+   .. +.++.+.+++.+.+.  ......|++..|.+++|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~---~~-~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~a   77 (385)
T PRK09276          4 LADRIKNLPPYLFAEIDKKKAEKIARGVDVISLGIGDP---DL-PTPDHIIEAMCKAVE--DPENHQYPSYEGMLEFRKA   77 (385)
T ss_pred             hhhHhhhCCccHHHHHHHHHHHHHhcCCCEEEecCCCC---CC-CCCHHHHHHHHHHHh--CCCCCCCCCCCCcHHHHHH
Confidence            445555555444433333222  134578999999975   32 334444444444443  2335679888999999999


Q ss_pred             HHHHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435           84 SAKLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG  162 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~  162 (407)
                      +++++...++..++++ +|++  |+|+++++.++..  ..+.+||+|++++|+|+.+...++..|.+++.++++++.++.
T Consensus        78 ia~~~~~~~g~~~~~~~~ii~--t~G~~~~i~~~~~--~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~  153 (385)
T PRK09276         78 VADWYKRRFGVELDPETEVIS--LIGSKEGIAHIPL--AFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFL  153 (385)
T ss_pred             HHHHHHHHhCCCCCCCCcEEE--ccCcHHHHHHHHH--HhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCc
Confidence            9999965445555666 5888  9999999999853  347899999999999999999999999999999985444567


Q ss_pred             cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      +|++++++.+.  ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....
T Consensus       154 ~d~~~l~~~~~--~~~~~v~l-~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~  228 (385)
T PRK09276        154 PDLDAIPEDVA--KKAKLMFI-NYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGY--KPPSFLEVPGAK  228 (385)
T ss_pred             CCHHHHHHhcc--ccceEEEE-eCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCC--CCCChhccCCCc
Confidence            89999988876  45677777 79999999999999999999999999999999999999987542  122332222224


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      +++++++||||.||++|+|+||+  +++ +++    .+.+.........+++.+.|.++..++.+..      .++++.+
T Consensus       229 ~~~i~~~S~SK~~g~~GlRiG~~--i~~-~~l----~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~  295 (385)
T PRK09276        229 DVGIEFHSLSKTYNMTGWRIGFA--VGN-ADL----IAGLGKVKSNVDSGVFQAIQEAGIAALNGPQ------EVVEELR  295 (385)
T ss_pred             CCEEEEecchhhcCCcchhheee--eCC-HHH----HHHHHHHHhhccCCCCHHHHHHHHHHHcCcH------HHHHHHH
Confidence            57899999999999999999999  554 444    4444444433444566778888888887532      5677888


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC----CHH-HHHHhHhhccEEEcCC--------C--eEEecCC
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----NSE-QVAFMTKEYHIYMTSD--------G--RISMAGL  387 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~l~~~gi~~~~g--------g--Ris~~~~  387 (407)
                      ++++++++.+.+.|++.+    +.+..+.+|+|.|+.+    +.. ++.++++++||.+.||        +  ||+++. 
T Consensus       296 ~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-  370 (385)
T PRK09276        296 KIYQERRDILVEGLRKLG----LEVEPPKATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTV-  370 (385)
T ss_pred             HHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCC-
Confidence            999999999999999876    6777888999999865    333 4567777789999996        1  999985 


Q ss_pred             CCCChhHHHHHHHH
Q 015435          388 SSKTVPHLTDAIHA  401 (407)
Q Consensus       388 ~~e~i~~~~~~l~~  401 (407)
                      +++++..++++|++
T Consensus       371 ~~~~l~~~l~~l~~  384 (385)
T PRK09276        371 PDERIEEAVERIKK  384 (385)
T ss_pred             CHHHHHHHHHHHhh
Confidence            77788888887764

>PLN02231 alanine transaminase

Probab=100.00  E-value=5.4e-45  Score=355.43  Aligned_cols=354  Identities=17%  Similarity=0.184  Sum_probs=275.5

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcc-ccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND-QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+++|+|+.|.+      ..|..+++++.+.+.+. .....+|+++.|.+++|+++++++...++..+++++|++  |+
T Consensus       127 ~~p~~i~~~~~~~------~fp~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~i--T~  198 (534)
T PLN02231        127 DHPSLLDKSETHG------LFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFL--TD  198 (534)
T ss_pred             cCCccCCCCCccc------cCCHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEE--eC
Confidence            3468899985542      33568888887766522 124677999999999999999999776777888999999  99


Q ss_pred             CcccHHHHHHHHHHhh-cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC----CCcEEE
Q 015435          108 SGTGSLRVGAEFLARH-YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP----SGAIVL  182 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~-~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~----~~~~v~  182 (407)
                      |+++++.+++.++  + .+||.|+++.|+|+.|...+...|.+++.++++.++++++|++++++.+.+..    ++++++
T Consensus       199 Ga~~ai~~~~~~l--~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~iv  276 (534)
T PLN02231        199 GASPAVHMMMQLL--IRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALV  276 (534)
T ss_pred             CHHHHHHHHHHHh--ccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEE
Confidence            9999999995333  5 37999999999999999999999999999999544568999999999986421    345666


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH------cCCcEEEEEecCccc-
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA------DGGECLVAQSYAKNM-  255 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~s~sK~~-  255 (407)
                      + +|||||||.+++.+++++|+++|++||++||+||+|.++.+++. ....++..+..      ...++++++||||.+ 
T Consensus       277 l-~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~-~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~  354 (534)
T PLN02231        277 V-INPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPD-KKFHSFKKVARSMGYGEKDISLVSFQSVSKGYY  354 (534)
T ss_pred             E-eCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCcccHHHHHhhhccccCCceEEEEeccCcccc
Confidence            6 89999999999999999999999999999999999999998531 12334333321      123689999999975 


Q ss_pred             cccCCCcceeEEeec--ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh----hhHHhHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCK--TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS----TMYKEWTLELKAMADRIISMR  329 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~  329 (407)
                      ++||+|+||+  ++.  ++++.+.+.+    ... ...+++..+|.++..+++.+    ..++.|.++.+.+++.+++++
T Consensus       355 g~pGlRiGy~--~~~~~~~~l~~~l~k----~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~  427 (534)
T PLN02231        355 GECGKRGGYM--EVTGFTSDVREQIYK----VAS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRA  427 (534)
T ss_pred             cCCccceEEE--EEecCCHHHHHHHHH----HHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            8999999999  443  5665555544    222 23467778888888888653    234455556667889999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCceeEEecCC--CH--------------H-HHHHhHhhccEEEcCCC-----------e
Q 015435          330 QQLFDALSARGTPGDWSHIIKQIGMFTFTGL--NS--------------E-QVAFMTKEYHIYMTSDG-----------R  381 (407)
Q Consensus       330 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~--------------~-~~~~~l~~~gi~~~~gg-----------R  381 (407)
                      +++.+.|++++.   +.+..|+||||.|.++  ..              + ++.++++++||++.||.           |
T Consensus       428 ~~l~~~L~~~~g---i~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~R  504 (534)
T PLN02231        428 KTLEDALNSLEG---VTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFR  504 (534)
T ss_pred             HHHHHHHhcCCC---ceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEE
Confidence            999999998732   7888999999999543  21              1 24567888999999972           8


Q ss_pred             EEecCCCCCChhHHHHHHHHHHHh
Q 015435          382 ISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       382 is~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +++.. ++++++.++++|++++++
T Consensus       505 it~~~-~~e~l~eal~RL~~~~~~  527 (534)
T PLN02231        505 CTILP-QEDKIPAIVSRLTEFHKS  527 (534)
T ss_pred             EEeCC-CHHHHHHHHHHHHHHHHH
Confidence            89874 889999999999998764

>PRK06107 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.8e-45  Score=350.62  Aligned_cols=372  Identities=14%  Similarity=0.151  Sum_probs=288.3

Q ss_pred             CCcccccccccCCCCCchhhhh---HhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCc
Q 015435            1 MDSESVFGKIVRAPEDPILGVT---VAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGL   77 (407)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~   77 (407)
                      ||.+-+.+|++..+++......   +.. ...+.+++||+.|.|   .. +.++.+.+.+.+.+.   ....+|.+..|.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~g~p---~~-~~~~~~~~~~~~~~~---~~~~~Y~~~~G~   72 (402)
T PRK06107          1 MSTFVPAARVSRIKPSPSTAAAARAREL-RAAGRSIVDLTVGEP---DF-DTPDHIKQAAVAAIE---RGETKYTLVNGT   72 (402)
T ss_pred             CCchhhhHHhhhcCccHHHHHHHHHHHH-HhccCCEEEcCCCCC---CC-CCCHHHHHHHHHHHH---cCCCCCCCCCCC
Confidence            4554455666665555433322   222 234578999999986   22 334444444444443   234679999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec
Q 015435           78 VDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD  157 (407)
Q Consensus        78 ~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~  157 (407)
                      +++|+++++++....+..+++++|++  |+|+++++.+++  ...+.+||+|++++|+|..|...+...|.+++.+++..
T Consensus        73 ~~lr~~ia~~l~~~~g~~~~~~~i~~--t~G~~~al~~~~--~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~  148 (402)
T PRK06107         73 PALRKAIIAKLERRNGLHYADNEITV--GGGAKQAIFLAL--MATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPE  148 (402)
T ss_pred             HHHHHHHHHHHHHhcCCCCChhhEEE--eCCHHHHHHHHH--HHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCc
Confidence            99999999999655566667899999  999999999984  44578999999999999999999999999998888843


Q ss_pred             CCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc-CceeeeccccccccCCCCCchhHHHH
Q 015435          158 PATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK-GLLPFFDSAYQGFASGSLDADAQSVR  236 (407)
Q Consensus       158 ~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~D~~y~~~~~~~~~~~~~~~~  236 (407)
                      ++++.+|++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++| ++++|+||+|.++.+++.  ...++.
T Consensus       149 ~~~~~~~~~~l~~~~~--~~~~~v~l-~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~--~~~~~~  223 (402)
T PRK06107        149 EQGFKLTPEALEAAIT--PRTRWLIL-NAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDE--PTPHLL  223 (402)
T ss_pred             ccCCCCCHHHHHhhcC--cCceEEEE-ECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCC--CCCCHH
Confidence            4456789999999886  55667766 89999999999999999999999998 999999999999887542  223333


Q ss_pred             HHH-HcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHH
Q 015435          237 MFV-ADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWT  315 (407)
Q Consensus       237 ~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  315 (407)
                      .+. ...+++++++||||.|+++|+|+||+  +++     +.+.+.+.........+++.+.|.++..+++...      
T Consensus       224 ~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~--~~~-----~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~------  290 (402)
T PRK06107        224 AAAPELRDRVLVTNGVSKTYAMTGWRIGYA--AGP-----ADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQ------  290 (402)
T ss_pred             HhCcCccCCEEEEeccchhhcCcccceeee--ecC-----HHHHHHHHHHHHhcccCCChHHHHHHHHHhcCCh------
Confidence            332 22468999999999999999999999  565     4455556656555556889999999999997543      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC---------------C-HHHHHHhHhhccEEEcCC
Q 015435          316 LELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL---------------N-SEQVAFMTKEYHIYMTSD  379 (407)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~l~~~gi~~~~g  379 (407)
                      +++++.++.++++++.+.+.|++.+.   +.+..|.+|+|.|+.+               + .+++..+++++||.+.||
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~L~~~~g---~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg  367 (402)
T PRK06107        291 SFVTESVAVYKQRRDYALALLNAIPG---LSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQG  367 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC---CcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCc
Confidence            56788889999999999999988632   6778899999999864               2 244667888899999998


Q ss_pred             C--------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          380 G--------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 g--------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .        ||+++. +++++++++++|+++++++
T Consensus       368 ~~Fg~~~~iRis~~~-~~e~l~~~l~~l~~~l~~~  401 (402)
T PRK06107        368 TAYGLSPYFRLSIAT-SLETLEEACARIERAVAAL  401 (402)
T ss_pred             cccCCCCeEEEEeCC-CHHHHHHHHHHHHHHHHhc
Confidence            3        999996 8899999999999998764

>PRK06290 aspartate aminotransferase; Provisional

Probab=100.00  E-value=6.2e-45  Score=347.33  Aligned_cols=343  Identities=14%  Similarity=0.129  Sum_probs=268.1

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCC-CCCC-ceEEeec
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPA-IKDN-RVTTVQC  106 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~-~~~~-~i~~~~t  106 (407)
                      ++.++|||++|.+   .. +.++...+++...+.  ......|+ ..|.+++|+++++++....+.. ++++ +|++  |
T Consensus        42 ~~~~~i~L~~g~p---~~-~~~~~~~~~l~~~~~--~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~i--t  112 (410)
T PRK06290         42 PDMELIDMGVGEP---DE-MADESVVEVLCEEAK--KPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIH--S  112 (410)
T ss_pred             CCCCeEEcCCCCC---CC-CCCHHHHHHHHHHHh--CCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEE--c
Confidence            4567999999986   32 334444555444443  22345685 4899999999999996544554 6665 7999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecC
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC  186 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~  186 (407)
                      +|+++++..++  ...+.+||.|+++.|+|+.+...++..|.+++.++++.+.++.+|++++++.+.  ++++++++ ++
T Consensus       113 ~Gs~~al~~~~--~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~--~~~k~i~l-~n  187 (410)
T PRK06290        113 IGSKPALAMLP--SCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIK--EKAKLLYL-NY  187 (410)
T ss_pred             cCHHHHHHHHH--HHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhc--ccceEEEE-EC
Confidence            99999999985  344789999999999999999999999999999999544456789999998886  45677777 79


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      ||||||.+++.+++++|+++|++||++||+||+|.++.+++.   ..++..+....+++|+++||||.||++|+|+||+ 
T Consensus       188 P~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~---~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~i-  263 (410)
T PRK06290        188 PNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK---PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFV-  263 (410)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC---CcChhcCCCccccEEEEeechhhcCCchhheEeE-
Confidence            999999999999999999999999999999999999987532   1222222223457899999999999999999999 


Q ss_pred             EeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 015435          267 IVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS  346 (407)
Q Consensus       267 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  346 (407)
                       +++ +    .+.+.+.........+++.+.|.++..++++.       .++++.+++++++++++.+.|++.|    +.
T Consensus       264 -i~~-~----~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~  326 (410)
T PRK06290        264 -VGN-E----LIVKAFATVKDNNDSGQFIAIQKAGIYALDHP-------EITEKIREKYSRRLDKLVKILNEVG----FK  326 (410)
T ss_pred             -EeC-H----HHHHHHHHHHhccccCCcHHHHHHHHHHhhCc-------HHHHHHHHHHHHHHHHHHHHHHhCC----Ce
Confidence             555 3    45555555555555566778899999998875       3466788899999999999999887    77


Q ss_pred             cccCCceeEEecCCC-----------H-HHHHHhHhhccEEEcCCC------eEEecC--CCCCChhHHHHHHHHHHHhh
Q 015435          347 HIIKQIGMFTFTGLN-----------S-EQVAFMTKEYHIYMTSDG------RISMAG--LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~-----------~-~~~~~~l~~~gi~~~~gg------Ris~~~--~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +..|.+++|.|+.+.           . ++...++++.++.+.|+.      ||+++.  .++++.++++++|++.|.++
T Consensus       327 ~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~  406 (410)
T PRK06290        327 AEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV  406 (410)
T ss_pred             ecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence            788899999997552           3 345677777778887752      999984  36789999999999998764

>PRK08912 hypothetical protein; Provisional

Probab=100.00  E-value=2.9e-45  Score=349.29  Aligned_cols=360  Identities=18%  Similarity=0.158  Sum_probs=276.6

Q ss_pred             ccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHH
Q 015435            8 GKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKL   87 (407)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~   87 (407)
                      ++++..++..+..... ..+  ..+.++|+.|.|   +. +.|+...+.+.+.+.   ....+|++..|.+++|++++++
T Consensus         6 ~~~~~~~~~~~~~~~~-~~~--~~~~i~l~~g~p---~~-~~p~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~~ia~~   75 (387)
T PRK08912          6 PVFADLPTTIFEVMSQ-LAR--EHGAINLGQGFP---DD-PGPEDVRRAAADALL---DGSNQYPPMMGLPELRQAVAAH   75 (387)
T ss_pred             HHHhhCCCCHHHHHHH-HHh--hCCeEEccCCCC---CC-CCCHHHHHHHHHHHh---cCCCCCCCCCCcHHHHHHHHHH
Confidence            4455545454433333 222  258999999986   33 446666666666554   2346799999999999999999


Q ss_pred             HhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChh
Q 015435           88 ILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQ  166 (407)
Q Consensus        88 ~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  166 (407)
                      +...++..++++ +|++  |+|+++++.+++  ...+.+||+|++++|+|..+...++..|.+++.++++ ++++++|++
T Consensus        76 ~~~~~g~~~~~~~~i~~--t~G~~~al~~~~--~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~  150 (387)
T PRK08912         76 YARFQGLDLDPETEVMV--TSGATEALAAAL--LALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLE-PPHWRLPRA  150 (387)
T ss_pred             HHHHhCCCCCCcccEEE--eCCcHHHHHHHH--HHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC-cccCcCCHH
Confidence            965555556777 9999  999999998884  4447899999999999999999999999999999983 446789999


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      ++++.+.  ++++++++ ++||||||.+++.+++++|+++|++|++++|+||+|.++.+++.  ...++..+....++++
T Consensus       151 ~l~~~~~--~~~~~v~l-~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~i  225 (387)
T PRK08912        151 ALAAAFS--PRTKAVLL-NNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGR--RHIPLMTLPGMRERTV  225 (387)
T ss_pred             HHHHHhC--ccceEEEE-eCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCC--CCcChhhCCCccCceE
Confidence            9999886  55677776 79999999999999999999999999999999999999887642  1222222222246899


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                      +++||||.||++|+|+||+  +++ ++    +.+.+.........+.+...|.++...+....      +++++.+++++
T Consensus       226 ~~~S~SK~~g~~GlRiG~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~  292 (387)
T PRK08912        226 KIGSAGKIFSLTGWKVGFV--CAA-PP----LLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPD------DYFEGMRADLA  292 (387)
T ss_pred             EEeechhhccCcCceeEEE--ecC-HH----HHHHHHHHHhhccccCChHHHHHHHHHHhCCH------HHHHHHHHHHH
Confidence            9999999999999999999  565 44    44444444443334556666777777665432      45678889999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC-------H-HHHHHhHhhccEEEcCC----------C--eEEecC
Q 015435          327 SMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN-------S-EQVAFMTKEYHIYMTSD----------G--RISMAG  386 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~l~~~gi~~~~g----------g--Ris~~~  386 (407)
                      ++++++.+.|+..+    +.+..+.+++|.|+.+.       . +++..+++++||.+.||          +  ||+++.
T Consensus       293 ~~~~~l~~~L~~~g----~~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~  368 (387)
T PRK08912        293 RSRDRLAAGLRRIG----FPVLPSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK  368 (387)
T ss_pred             HHHHHHHHHHHhCC----CcccCCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC
Confidence            99999999999887    67778889999998552       3 24556677889999885          1  999997


Q ss_pred             CCCCChhHHHHHHHHHHHh
Q 015435          387 LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~~  405 (407)
                       +++.++.++++|++++++
T Consensus       369 -~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        369 -RDATLDEAVERLAAARRR  386 (387)
T ss_pred             -CHHHHHHHHHHHHHHHhc
Confidence             789999999999998865

>PRK08960 hypothetical protein; Provisional

Probab=100.00  E-value=6.6e-45  Score=346.67  Aligned_cols=361  Identities=16%  Similarity=0.187  Sum_probs=281.4

Q ss_pred             cccccCCCCCchhhhhHhhhh--cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYNK--DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      .+++.+..+..+..+...+.+  ..++++++|+.|.+   .. +.|..+.+++.+.+.   .....|.+..|.+++|+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~---~~-~~~~~v~~a~~~~~~---~~~~~Y~~~~g~~~lr~~i   78 (387)
T PRK08960          6 SRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEP---DF-TTAEPIVAAGQAALA---AGHTRYTAARGLPALREAI   78 (387)
T ss_pred             hhHHHhCCchHHHHHHHHHHHHHhcCCCeEEeCCCCC---CC-CCCHHHHHHHHHHHh---cCCCccCCCCCCHHHHHHH
Confidence            455555566666655543331  34578999999986   22 446666666655554   2345698899999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      ++++...++..+++++|++  |+|+++++.++...  .+.+||+|++++|+|+.+...+...|.+++.++++.+.++.+|
T Consensus        79 a~~~~~~~g~~~~~~~i~i--t~G~~~al~~~~~~--~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d  154 (387)
T PRK08960         79 AGFYAQRYGVDVDPERILV--TPGGSGALLLASSL--LVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLT  154 (387)
T ss_pred             HHHHHHHhCCCCChhhEEE--ccCcHHHHHHHHHH--hcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCC
Confidence            9999655556677899999  99999999998533  3789999999999999999999999999999998544456899


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++++.+.  ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.   ..++   ....++
T Consensus       155 ~~~l~~~~~--~~~~~i~i-~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~---~~~~---~~~~~~  225 (387)
T PRK08960        155 PALVERHWN--ADTVGALV-ASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD---AASV---LEVDDD  225 (387)
T ss_pred             HHHHHHHhC--ccceEEEE-ECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC---CCCh---hhccCC
Confidence            999999887  55666666 89999999999999999999999999999999999999887532   2222   223468


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +++++||||.||++|+|+||+  +++     +.+...+.........+++.+.|.++..++.+.     +.+++++.++.
T Consensus       226 vi~~~S~SK~~g~~GlRiG~~--~~~-----~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-----~~~~l~~~~~~  293 (387)
T PRK08960        226 AFVLNSFSKYFGMTGWRLGWL--VAP-----PAAVPELEKLAQNLYISASTPAQHAALACFEPE-----TLAILEARRAE  293 (387)
T ss_pred             EEEEeecccccCCcccEEEEE--EcC-----HHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcC-----cHHHHHHHHHH
Confidence            999999999999999999999  566     345555555555555677889999888888642     13667888899


Q ss_pred             HHHHHHHHHHHHHhcCCCCCccc-ccCCceeEEecCC-----CHH-HHHHhHhhccEEEcCCC-----------eEEecC
Q 015435          325 IISMRQQLFDALSARGTPGDWSH-IIKQIGMFTFTGL-----NSE-QVAFMTKEYHIYMTSDG-----------RISMAG  386 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~-~~~~~l~~~gi~~~~gg-----------Ris~~~  386 (407)
                      ++++++.+.+.|+..+    +.. ..|.+|+|.|+++     +.. ++.++++++||.+.||.           ||+++.
T Consensus       294 ~~~~~~~l~~~L~~~~----~~~~~~p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~  369 (387)
T PRK08960        294 FARRRDFLLPALRELG----FGIAVEPQGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ  369 (387)
T ss_pred             HHHHHHHHHHHHHhcC----CcCCcCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC
Confidence            9999999999999876    443 4678999999865     333 45567778999999861           999996


Q ss_pred             CCCCChhHHHHHHHHHHH
Q 015435          387 LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~  404 (407)
                       +.+.++.++++|+++++
T Consensus       370 -~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        370 -SLPRLQEAVERIARGLR  386 (387)
T ss_pred             -CHHHHHHHHHHHHHHHh
Confidence             77888888888888764

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=100.00  E-value=5.1e-45  Score=349.07  Aligned_cols=367  Identities=15%  Similarity=0.181  Sum_probs=280.0

Q ss_pred             CCchhhhhHhhhhc--CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCC
Q 015435           15 EDPILGVTVAYNKD--TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGAD   92 (407)
Q Consensus        15 ~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~   92 (407)
                      .+++....+.+++.  .++++++|++|.|......+.++.+.+++.+.+.  ......|.+..|..++|+++++++.. .
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~aia~~~~~-~   89 (401)
T TIGR01264        13 VNPIRAIVDNMKVKPNPEKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLD--SGKYNGYAPTVGALSAREAIASYYHN-P   89 (401)
T ss_pred             hhHHHHHHHHHHhhhhcCCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHh--ccCCCCCCCCCCCHHHHHHHHHHHhh-c
Confidence            34566666555543  3468899999987211122334445554444443  23345698999999999999999954 4


Q ss_pred             CCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHH
Q 015435           93 SPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDL  172 (407)
Q Consensus        93 ~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i  172 (407)
                      +..+++++|++  |+|+++++.+++.  ..+.+||+|++++|+|..+...++..|++++.+++..+.++++|++.+++.+
T Consensus        90 ~~~~~~~~i~~--t~G~~~al~~~~~--~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~  165 (401)
T TIGR01264        90 DGPIEADDVVL--CSGCSHAIEMCIA--ALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLI  165 (401)
T ss_pred             CCCCCHHHEEE--CcChHHHHHHHHH--HhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHh
Confidence            44577899999  9999999999853  3477999999999999999999999999999999854445789999999988


Q ss_pred             HcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecC
Q 015435          173 RAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA  252 (407)
Q Consensus       173 ~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  252 (407)
                      .  ++++++++ ++||||||.+++.+++++|+++|+++|+++|+||+|.+|.+++.  ...++..+.. ..++|+++|||
T Consensus       166 ~--~~~~~v~~-~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~-~~~vi~~~SfS  239 (401)
T TIGR01264       166 D--EKTAALIV-NNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGA--TFEPLASLSS-TVPILSCGGLA  239 (401)
T ss_pred             c--cCceEEEE-cCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCc--ccccHHHcCC-CCcEEEEccCc
Confidence            6  45667666 99999999999999999999999999999999999999987642  2233333221 23589999999


Q ss_pred             ccccccCCCcceeEEeecCh-hhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 015435          253 KNMGLYGERVGALSIVCKTE-DVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQ  331 (407)
Q Consensus       253 K~~~~~G~r~G~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (407)
                      |.|+++|+|+||+  +++++ +....+...+..... ...+++.+.|.++..++.+..     .+++++.++.+++++++
T Consensus       240 K~~~~~GlRiG~i--v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~-----~~~l~~~~~~~~~~r~~  311 (401)
T TIGR01264       240 KRWLVPGWRLGWI--IIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRTP-----QEYFDGTLSVLESNAML  311 (401)
T ss_pred             ccCCCccceEEEE--EecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHH
Confidence            9999999999999  56643 222334444444332 234678889999988886521     25678888999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCceeEEecCCC----------HHHHHHhHhhccEEEcCCC--------eEEecCCCCCChh
Q 015435          332 LFDALSARGTPGDWSHIIKQIGMFTFTGLN----------SEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVP  393 (407)
Q Consensus       332 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~  393 (407)
                      +.+.|++.+.   +.+..|.+|+|.|+.+.          .+++..+++++||.+.||.        ||+++. ++++++
T Consensus       312 l~~~L~~~~~---~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~-~~~~l~  387 (401)
T TIGR01264       312 CYGALAAVPG---LRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTV-PVVMME  387 (401)
T ss_pred             HHHHHHhCCC---CcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcC-CHHHHH
Confidence            9999998732   67778899999999742          3345677778999999863        999996 789999


Q ss_pred             HHHHHHHHHHHhh
Q 015435          394 HLTDAIHAAVTRM  406 (407)
Q Consensus       394 ~~~~~l~~~l~~~  406 (407)
                      .++++|.++++++
T Consensus       388 ~~l~rl~~~~~~~  400 (401)
T TIGR01264       388 EACSRIQEFCERH  400 (401)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998764

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK07683 aminotransferase A; Validated

Probab=100.00  E-value=6.7e-45  Score=346.25  Aligned_cols=362  Identities=15%  Similarity=0.186  Sum_probs=280.1

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      |.+++.......+......+.  +.++.|+|+.|.|   .. +.+..+.+++.+.+.   .....|.+..|.+++|++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~p---~~-~~~~~~~~a~~~~~~---~~~~~Y~~~~g~~~lr~~ia   75 (387)
T PRK07683          5 INPRVKDIQISGIRQFSNMVQ--NYDNLISLTIGQP---DF-PTPSHVKEAAKRAIT---ENYTSYTHNAGLLELRKAAC   75 (387)
T ss_pred             hhHHHHhCCccHHHHHHHHHH--hcCCeEEecCCCC---CC-CCCHHHHHHHHHHHh---cCCCCCCCCCCCHHHHHHHH
Confidence            345665555555544444432  2367899999975   32 334455555555543   23567988999999999999


Q ss_pred             HHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           86 KLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        86 ~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      +++...++..++++ +|++  |+|+++++.+++.  ..+.+||+|+++.|+|..+...++..|++++.++.+ ++++.+|
T Consensus        76 ~~l~~~~g~~~~~~~~I~~--t~G~~~al~~~~~--~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~  150 (387)
T PRK07683         76 NFVKDKYDLHYSPESEIIV--TIGASEAIDIAFR--TILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTR-STGFRLT  150 (387)
T ss_pred             HHHHHHhCCCCCCCCcEEE--eCChHHHHHHHHH--HhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecC-cccCCCC
Confidence            99965556666777 9999  9999999999853  347799999999999999999999999999999983 4556778


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++++.+.  ++++++++ ++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.   ..++..+.+..++
T Consensus       151 ~~~l~~~~~--~~~~~i~i-~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~~~~~  224 (387)
T PRK07683        151 AEALENAIT--EKTRCVVL-PYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP---HTSIAHFPEMREK  224 (387)
T ss_pred             HHHHHHhcC--cCceEEEE-eCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC---cCChhhccCCcCC
Confidence            899999886  45677666 99999999999999999999999999999999999999987532   2233333233468


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +++++||||.||+||+|+||+  +++ +++    ++.+.........+++.+.|.++..++.+..      .+.++.+++
T Consensus       225 vi~~~s~SK~~~~pGlRiG~i--~~~-~~l----~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~  291 (387)
T PRK07683        225 TIVINGLSKSHSMTGWRIGFL--FAP-SYL----AKHILKVHQYNVTCASSISQYAALEALTAGK------DDAKMMRHQ  291 (387)
T ss_pred             eEEEeeccccccCccceeEEE--EcC-HHH----HHHHHHHHHhccCCCChHHHHHHHHHHhCCh------HHHHHHHHH
Confidence            999999999999999999999  455 444    4444433333334567788999998887653      346777888


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CH-HHHHHhHhhccEEEcCCC----------eEEecCCC
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NS-EQVAFMTKEYHIYMTSDG----------RISMAGLS  388 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~~~~gg----------Ris~~~~~  388 (407)
                      ++++++++.+.|++.+    +.+..+.+++|.|+.+     +. +++.++++++||.+.||.          ||+++. +
T Consensus       292 ~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~-~  366 (387)
T PRK07683        292 YKKRRDYVYNRLISMG----LDVEKPTGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY-S  366 (387)
T ss_pred             HHHHHHHHHHHHHHcC----CcccCCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC-C
Confidence            9999999999998876    7778889999999743     33 345677888999999862          999996 8


Q ss_pred             CCChhHHHHHHHHHHHh
Q 015435          389 SKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~~  405 (407)
                      +++++.++++|.+++++
T Consensus       367 ~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        367 IETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            89999999999998865

>PRK12414 putative aminotransferase; Provisional

Probab=100.00  E-value=4.3e-45  Score=347.21  Aligned_cols=356  Identities=15%  Similarity=0.180  Sum_probs=273.1

Q ss_pred             cccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK   86 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~   86 (407)
                      ++++...+.+ +........  ..++.|+|+.|.+   +. +.++...+++.+.+.   ....+|+|..|.+++|+++++
T Consensus         8 ~~~~~~~~~~-~~~~~~~~~--~~~~~i~l~~g~p---~~-~~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~~ia~   77 (384)
T PRK12414          8 RSKLPDVGTT-IFTVIGQLA--AQHDALNLSQGAP---NF-APDPALVEGVARAMR---DGHNQYAPMAGIAALREALAE   77 (384)
T ss_pred             HHhcccCCcc-HHHHHHHHH--HhCCeEEcCCCCC---CC-CCCHHHHHHHHHHHH---hCCCCcCCCCCcHHHHHHHHH
Confidence            5566555543 333333222  3367999999986   32 334444444444443   234679999999999999999


Q ss_pred             HHhCCCCCCCCC-CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435           87 LILGADSPAIKD-NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF  165 (407)
Q Consensus        87 ~~~~~~~~~~~~-~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  165 (407)
                      ++....+...++ ++|++  |+|+++++.+++  ...+.+||+|++++|+|..+...++..|.+++.+++. ++++.+|+
T Consensus        78 ~l~~~~g~~~~~~~~i~i--t~g~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~d~  152 (384)
T PRK12414         78 KTERLYGARYDPASEVTV--IASASEGLYAAI--SALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLS-PEDFRVNW  152 (384)
T ss_pred             HHHHHhCCCCCCCCcEEE--ECChHHHHHHHH--HHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecC-ccccccCH
Confidence            985444444444 68999  999999999884  4447899999999999999999999999999999984 44578999


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +++++.+.  ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+....+++
T Consensus       153 ~~l~~~l~--~~~~~v~i-~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~--~~~~~~~~~~~~~~  227 (384)
T PRK12414        153 DEVAAAIT--PRTRMIIV-NTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGAR--HHSMARHRELAERS  227 (384)
T ss_pred             HHHHhhcC--cccEEEEE-cCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCC--ccCcccCcCccCcE
Confidence            99999886  55677766 899999999999999999999999999999999999998876421  12222222234589


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                      ++++||||.||++|+|+||+  +++     +.+.+.+.........+++.+.|.++..++++..       ...+.++.+
T Consensus       228 i~~~SfSK~~~~pGlRiG~~--v~~-----~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~-------~~~~~~~~~  293 (384)
T PRK12414        228 VIVSSFGKSYHVTGWRVGYC--LAP-----AELMDEIRKVHQFMVFSADTPMQHAFAEALAEPA-------SYLGLGAFY  293 (384)
T ss_pred             EEEecccccccCccceEEEE--ecC-----HHHHHHHHHHHhheecCCCcHHHHHHHHHhcCCh-------HHHHHHHHH
Confidence            99999999999999999999  566     3455555555544455788899999999998753       123467788


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-------CHHHHHHhHhhccEEEcCCC------------eEEecC
Q 015435          326 ISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-------NSEQVAFMTKEYHIYMTSDG------------RISMAG  386 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~~~~gg------------Ris~~~  386 (407)
                      +++++++.+.|++.+    +.+.++.||+|.|+.+       +.+++.++++++||.+.||.            ||+++.
T Consensus       294 ~~~r~~l~~~L~~~g----~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~  369 (384)
T PRK12414        294 QRKRDLLARELAGSR----FELLPSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK  369 (384)
T ss_pred             HHHHHHHHHHHHhCC----CeecCCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC
Confidence            999999999999886    6778889999999743       34566688888999998851            999997


Q ss_pred             CCCCChhHHHHHHHH
Q 015435          387 LSSKTVPHLTDAIHA  401 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~  401 (407)
                       +++++++++++|.+
T Consensus       370 -~~~~~~~~~~rl~~  383 (384)
T PRK12414        370 -DDATLVEGARRLCS  383 (384)
T ss_pred             -CHHHHHHHHHHHhh
Confidence             78889999998875

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=2e-44  Score=348.69  Aligned_cols=348  Identities=16%  Similarity=0.211  Sum_probs=270.5

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhcc----------ccccccCCCCCCcHHHHHHHHHHHhCCCC--CCCC
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND----------QSRVKEYLPIVGLVDFNKLSAKLILGADS--PAIK   97 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~y~~~~g~~~l~~~~a~~~~~~~~--~~~~   97 (407)
                      ...+|+|+.++.      +.+.+.+...+....+.          ......|++..|.++||+++++++...++  ..++
T Consensus        37 p~g~i~L~~~En------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~  110 (468)
T PLN02450         37 PSGIIQMGLAEN------QLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFD  110 (468)
T ss_pred             CCeeEEeehhHh------HhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcC
Confidence            347999999873      45557777776554200          01234588888999999999999954333  3367


Q ss_pred             CCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCceeeEEEeecCCCCCcChhhHHHHHHcC-
Q 015435           98 DNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-  175 (407)
Q Consensus        98 ~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-  175 (407)
                      +++|++  |+|+++++.+++  ...+.+||.|++++|+|+.+...+. ..|++++.+++..++++.+|++++++.+.+. 
T Consensus       111 ~~~Iii--t~Ga~~al~~l~--~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~  186 (468)
T PLN02450        111 PNKLVL--TAGATSANETLM--FCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQ  186 (468)
T ss_pred             hHHeEE--ccChHHHHHHHH--HHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHH
Confidence            899999  999999999994  4457899999999999999988888 5899999999854556778889999887631 


Q ss_pred             ---CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH--------cCCc
Q 015435          176 ---PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA--------DGGE  244 (407)
Q Consensus       176 ---~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~--------~~~~  244 (407)
                         .+.+++++ +|||||||.+++.+++++|+++|++||++||+||+|.++.+.+.  +..+......        ..++
T Consensus       187 ~~~~~~k~v~l-~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~--~~~s~l~~~~~~~~~~~~~~~~  263 (468)
T PLN02450        187 KLNLKVKGVLI-TNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSP--GFVSVMEVLKDRKLENTDVSNR  263 (468)
T ss_pred             hcCCCeeEEEE-ecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCC--CcccHHHHhhhcccccCCCCCc
Confidence               24566666 89999999999999999999999999999999999999887642  2223222211        2468


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +++++||||.|+++|+|+||+  +++++.+.+.    +.....  ...++.+.|.++..+|++..+.+   .++++.+++
T Consensus       264 vi~l~S~SK~~~l~GlRiG~l--i~~~~~l~~~----~~~~~~--~~~~s~~~Q~a~~~~L~~~~~~~---~~l~~~~~~  332 (468)
T PLN02450        264 VHIVYSLSKDLGLPGFRVGAI--YSNDEMVVSA----ATKMSS--FGLVSSQTQYLLSALLSDKKFTK---NYLEENQKR  332 (468)
T ss_pred             EEEEEeccccCCCCCccEEEE--EECCHHHHHH----HHHHhh--cCCCCHHHHHHHHHHhCCchhHH---HHHHHHHHH
Confidence            999999999999999999999  6775543332    222221  23567889999999998864221   256778899


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC-----------HHHHHHhHhhccEEEcCCC----------eEE
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN-----------SEQVAFMTKEYHIYMTSDG----------RIS  383 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~gi~~~~gg----------Ris  383 (407)
                      ++++++.+.+.|++.+    +.+..+++|+|+|+.+.           .+...++++++||.+.||.          ||+
T Consensus       333 l~~rr~~l~~~L~~~g----i~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~  408 (468)
T PLN02450        333 LKQRQKKLVSGLEAAG----IKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVC  408 (468)
T ss_pred             HHHHHHHHHHHHHHcC----CcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEE
Confidence            9999999999999887    67788999999999763           1234567788999999972          999


Q ss_pred             ecCCCCCChhHHHHHHHHHHHh
Q 015435          384 MAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       384 ~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ++.++++++++++++|++++++
T Consensus       409 f~~~~~~~l~~~l~ri~~~l~~  430 (468)
T PLN02450        409 FANMSEETLDLAMKRLKSFVES  430 (468)
T ss_pred             ecCCCHHHHHHHHHHHHHHHHh
Confidence            9965789999999999999865

>PRK07337 aminotransferase; Validated

Probab=100.00  E-value=2.1e-44  Score=343.50  Aligned_cols=360  Identities=15%  Similarity=0.189  Sum_probs=277.8

Q ss_pred             cccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      .+++.....+.+........  ...++++++|+.|.+   .. +.++.+.+++.+.+.   .....|++..|.+++|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~---~~-~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~i   76 (388)
T PRK07337          4 AARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEP---DF-TAPEPVVEAAARALR---RGVTQYTSALGLAPLREAI   76 (388)
T ss_pred             hhHhHhcCchHHHHHHHHHHHHHhcCCCEEEeCCcCC---CC-CCCHHHHHHHHHHHh---cCCCCCCCCCCCHHHHHHH
Confidence            34555555554544443332  224578999999985   22 334455555544443   2356798888999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      ++++...++..+++++|++  |+|+++++.++..  ..+.+||+|++++|+|..+...++..|.+++.+|++.+.++++|
T Consensus        77 a~~~~~~~~~~~~~~~i~~--t~G~~~al~~~~~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~  152 (388)
T PRK07337         77 AAWYARRFGLDVAPERIVV--TAGASAALLLACL--ALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLT  152 (388)
T ss_pred             HHHHHHHhCCCCChHhEEE--ecCcHHHHHHHHH--HhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCC
Confidence            9999655566677899999  9999999998853  34789999999999999999999999999999998534467899


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++++.+.  ++++++++ ++||||||.+++.+++++|+++|+++++++|+||+|.++.+++.   ..+.   ....++
T Consensus       153 ~~~l~~~~~--~~~~~v~l-~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~---~~~~---~~~~~~  223 (388)
T PRK07337        153 AADVEAAWG--ERTRGVLL-ASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA---PVSA---LSLGDD  223 (388)
T ss_pred             HHHHHhhcC--ccceEEEE-ECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC---CcCh---hhccCC
Confidence            999999887  56777776 99999999999999999999999999999999999999887532   1121   123467


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +++++||||.|+++|+|+||+  +++     +.+.+.+.........+++.+.|.++..++.+..+     ...++.++.
T Consensus       224 vi~~~S~SK~~~~~G~RiG~~--~~~-----~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~-----~~~~~~~~~  291 (388)
T PRK07337        224 VITINSFSKYFNMTGWRLGWL--VVP-----EALVGTFEKLAQNLFICASALAQHAALACFEPDTL-----AIYERRRAE  291 (388)
T ss_pred             EEEEEechhhcCCchhheeee--ecC-----HHHHHHHHHHHHHhccCCChHHHHHHHHHhccCch-----HHHHHHHHH
Confidence            899999999999999999999  566     44555555555455557788899998888875421     335677889


Q ss_pred             HHHHHHHHHHHHHhcCCCCCccc-ccCCceeEEecCCC---------H-HHHHHhHhhccEEEcCCC-----------eE
Q 015435          325 IISMRQQLFDALSARGTPGDWSH-IIKQIGMFTFTGLN---------S-EQVAFMTKEYHIYMTSDG-----------RI  382 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~---------~-~~~~~~l~~~gi~~~~gg-----------Ri  382 (407)
                      ++++++++.+.|++.+    +.. ..|.+|+|.|+.+.         . +++.++++++||.+.||.           ||
T Consensus       292 ~~~~r~~~~~~L~~~~----~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri  367 (388)
T PRK07337        292 FKRRRDFIVPALESLG----FKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRL  367 (388)
T ss_pred             HHHHHHHHHHHHHhcC----CccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEE
Confidence            9999999999999876    443 46789999999653         3 345677888999998751           99


Q ss_pred             EecCCCCCChhHHHHHHHHHH
Q 015435          383 SMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       383 s~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +++. +++.++.++++|++++
T Consensus       368 ~~~~-~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        368 SYAT-SMSRLEEAVARLGKLF  387 (388)
T ss_pred             EecC-CHHHHHHHHHHHHHHh
Confidence            9997 7788899999888764

>PRK05957 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.4e-44  Score=342.65  Aligned_cols=366  Identities=16%  Similarity=0.210  Sum_probs=278.0

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      +.+|+...++..+ ..+....+. .+.+++|+.|.+   .. +.+..+.+++.+.+.  ......|.+..|.+++|++++
T Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~g~~---~~-~~~~~~~~a~~~~~~--~~~~~~Y~~~~G~~~lr~~~~   75 (389)
T PRK05957          4 FTSRMDAVQSPII-PVVGQLIRE-NPGTISLGQGVV---SY-PPPPEAIEALNNFLA--NPENHKYQAVQGIPPLLEAIT   75 (389)
T ss_pred             hhHHHHhcCCcHH-HHHHHHHHh-CCCeEEccCCCC---CC-CCCHHHHHHHHHHHh--CCCCCCCCCCCCCHHHHHHHH
Confidence            3455555554444 333322222 257899999985   32 445555555545443  233467988999999999999


Q ss_pred             HHHhCCCCCCCC-CCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           86 KLILGADSPAIK-DNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        86 ~~~~~~~~~~~~-~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      +++....+..++ +++|++  |+|+++++..++  ...+.+||+|++++|+|..+...++..|++++.++.  +.++++|
T Consensus        76 ~~l~~~~g~~~~~~~~i~~--t~G~~~~l~~~~--~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~--~~~~~~d  149 (389)
T PRK05957         76 QKLQQDNGIELNNEQAIVV--TAGSNMAFMNAI--LAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPT--DDNYQLQ  149 (389)
T ss_pred             HHHHHHhCCCCCCCCeEEE--eCChHHHHHHHH--HHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeec--CCCCCcC
Confidence            999555455455 578999  999999998884  344789999999999999999988999999999998  3457899


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++++.+.  ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...+...+.+...+
T Consensus       150 ~~~l~~~i~--~~~klv~~-~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~~~~~  224 (389)
T PRK05957        150 PEAIEQAIT--PKTRAIVT-ISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGV--KHFSPGSIPGSGNH  224 (389)
T ss_pred             HHHHHHhcC--cCceEEEE-eCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCC--CccChhhCCCccCc
Confidence            999999987  56777766 89999999999999999999999999999999999999988642  11222222344568


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +|+++||||.||++|+|+||+  +++ +    .+.+++.........+++.+.|.++..++++..      .++++.++.
T Consensus       225 ~i~~~S~SK~~g~~GlRiG~~--~~~-~----~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~  291 (389)
T PRK05957        225 TISLYSLSKAYGFASWRIGYM--VIP-I----HLLEAIKKIQDTILICPPVVSQYAALGALQVGK------SYCQQHLPE  291 (389)
T ss_pred             EEEEecchhhccCccceeEEE--ecC-H----HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCCh------HHHHHHHHH
Confidence            999999999999999999999  565 3    455555555554555778889999998887643      345666677


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC----CH-HHHHHhHhhccEEEcCCC----------eEEecCCCC
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----NS-EQVAFMTKEYHIYMTSDG----------RISMAGLSS  389 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~l~~~gi~~~~gg----------Ris~~~~~~  389 (407)
                      ++++++++.+.|+..+.  .+.+..+.+|+|.|+.+    +. +++.++++++||.+.||.          ||+++..++
T Consensus       292 ~~~~r~~l~~~L~~~~~--~~~~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~  369 (389)
T PRK05957        292 IAQVRQILLKSLGQLQD--RCTLHPANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQK  369 (389)
T ss_pred             HHHHHHHHHHHHHhcCC--CccccCCCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCH
Confidence            89999999999987642  13566788999999854    33 456677777999999961          999986678


Q ss_pred             CChhHHHHHHHHHHHh
Q 015435          390 KTVPHLTDAIHAAVTR  405 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~  405 (407)
                      +++++++++|.+.++.
T Consensus       370 ~~l~~~~~~l~~~~~~  385 (389)
T PRK05957        370 ATAKEGIERLVQGLKT  385 (389)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8899999999998875

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=100.00  E-value=4.3e-44  Score=341.17  Aligned_cols=364  Identities=14%  Similarity=0.186  Sum_probs=276.1

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      |.+|+++.....+..+.....  +.+++|+|+.|.+   .. +.+..+.++..+.+.   .....|.+..|.+++|++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~---~~-~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia   77 (391)
T PRK07309          7 FNKQLDKIEVSLIRQFDQSIS--DIPGILKLTLGEP---DF-TTPDHVKEAAKRAID---ANQSHYTGMAGLLELRQAAA   77 (391)
T ss_pred             HHhhhhhcCccHHHHHHHHHH--hcCCeEEcCCCCC---CC-CCCHHHHHHHHHHHh---cCCCCCCCCCCcHHHHHHHH
Confidence            345555555544444433332  2267999999986   22 224444444444443   22356988999999999999


Q ss_pred             HHHhCCCCCCCC-CCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           86 KLILGADSPAIK-DNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        86 ~~~~~~~~~~~~-~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      +++...++..++ +++|++  |+|+++++.+++  ...+.+||+|++++|+|..+...++..|.+++.++. ++.++.+|
T Consensus        78 ~~~~~~~~~~~~~~~~i~i--t~G~~~al~~~~--~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d  152 (391)
T PRK07309         78 DFVKEKYNLDYAPENEILV--TIGATEALSASL--TAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDT-TENDFVLT  152 (391)
T ss_pred             HHHHHHhCCCCCCCCcEEE--eCChHHHHHHHH--HHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEec-CCcCCcCC
Confidence            999655555455 378999  999999999985  444789999999999999999999999999999998 34456899


Q ss_pred             hhhHHHHHHcCC-CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          165 FQGLLEDLRAAP-SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       165 ~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      ++++++++.+.+ +++++++ ++||||||++++.+++++|+++|++||+++|+|++|.++.+++.  ...++..+  ..+
T Consensus       153 ~~~l~~~~~~~~~~~~~i~l-~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~--~~~~~~~~--~~~  227 (391)
T PRK07309        153 PEMLEKAILEQGDKLKAVIL-NYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE--PHVSIAEY--LPD  227 (391)
T ss_pred             HHHHHHHhhccCCCeEEEEE-ECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC--CCCCHHHh--ccC
Confidence            999999987432 3566666 78999999999999999999999999999999999999987532  12233222  246


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ++++++||||.||++|+|+||+  +++ +++    .+.+.........+++.+.|.++..++++..      ......++
T Consensus       228 ~~i~~~S~SK~~g~~GlRvG~~--v~~-~~~----~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~  294 (391)
T PRK07309        228 QTILINGLSKSHAMTGWRIGLI--FAP-AEF----TAQLIKSHQYLVTAATTMAQFAAVEALTNGK------DDALPMKK  294 (391)
T ss_pred             CEEEEecChhhccCccceeEEE--EeC-HHH----HHHHHHHHhhcccCCChHHHHHHHHHHhCCh------hHHHHHHH
Confidence            8999999999999999999999  565 444    4444433333344778888999999988653      22346778


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC-------HHHHHHhHhhccEEEcCCC----------eEEecC
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN-------SEQVAFMTKEYHIYMTSDG----------RISMAG  386 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~gi~~~~gg----------Ris~~~  386 (407)
                      +++++++++.+.|++.+    +.+..|.+|+|.|+.+.       .+.+.++++++||.+.||.          ||+++.
T Consensus       295 ~~~~~~~~~~~~l~~~~----~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~  370 (391)
T PRK07309        295 EYIKRRDYIIEKMTDLG----FKIIKPDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA  370 (391)
T ss_pred             HHHHHHHHHHHHHHHCC----CeecCCCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence            88899999999998876    77888899999997542       2345577788999998862          999986


Q ss_pred             CCCCChhHHHHHHHHHHHhh
Q 015435          387 LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~~~  406 (407)
                       +.++++.++++|+++++++
T Consensus       371 -~~~~l~~~i~~l~~~~~~~  389 (391)
T PRK07309        371 -SMETIKEAMKRLKEYMEEH  389 (391)
T ss_pred             -CHHHHHHHHHHHHHHHHhh
Confidence             7789999999999999765

>PRK06108 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.2e-44  Score=342.17  Aligned_cols=343  Identities=19%  Similarity=0.189  Sum_probs=270.3

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      +++|+|+.|.+   .. +.+..+.+++...+.  . ....|.+..|.+++|+++++++....+..+++++|++  |+|++
T Consensus        24 ~~~i~l~~g~~---~~-~~~~~~~~~~~~~~~--~-~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~--t~g~~   94 (382)
T PRK06108         24 EGVLPLWFGES---DL-PTPDFIRDAAAAALA--D-GETFYTHNLGIPELREALARYVSRLHGVATPPERIAV--TSSGV   94 (382)
T ss_pred             CCeEEecCCCC---CC-CCCHHHHHHHHHHHh--c-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEE--eCChH
Confidence            57999999986   32 445555555555554  2 2345988999999999999999655565677899999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecC-CCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDP-ATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      +++.+++  ...+.+||+|++++|+|..+...++..|++++.+|++.+ .++.+|++++++.+.  ++++++++ ++|||
T Consensus        95 ~al~~~~--~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l-~~p~N  169 (382)
T PRK06108         95 QALMLAA--QALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAIT--PRTRALFI-NSPNN  169 (382)
T ss_pred             HHHHHHH--HHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcC--ccceEEEE-ECCCC
Confidence            9999985  334779999999999999999999999999999998532 345689999999886  45667666 79999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||.+++.+++++|+++|+++|+++|+||+|.++.+++. ....++..+....+++++++||||.|+++|+|+||+  ++
T Consensus       170 PtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~--~~  246 (382)
T PRK06108        170 PTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPG-GRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWL--VA  246 (382)
T ss_pred             CCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCC-CCCCCHhhcCCCcCCEEEEeechhhccCcccceeee--eC
Confidence            999999999999999999999999999999999987511 122232223333468999999999999999999999  56


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      + ++    +.+.+.........+++.+.|.++..++.+..      +++++.+++++++++++.+.|++.+.   +.+..
T Consensus       247 ~-~~----~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~  312 (382)
T PRK06108        247 P-PA----LGQVLEKLIEYNTSCVAQFVQRAAVAALDEGE------DFVAELVARLRRSRDHLVDALRALPG---VEVAK  312 (382)
T ss_pred             C-HH----HHHHHHHHHHhcccCCChHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHHhCCC---CcccC
Confidence            5 44    44444444333345678889999998887653      45678888999999999999988732   67778


Q ss_pred             CCceeEEecCCC----H-HHHHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          350 KQIGMFTFTGLN----S-EQVAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       350 ~~~~~~~~~~~~----~-~~~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      |++|+|.|+.+.    . +++..+++++||.+.||        +  ||+++. ++++++.++++|++++++
T Consensus       313 p~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~~  382 (382)
T PRK06108        313 PDGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLRRFLAR  382 (382)
T ss_pred             CCeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHhC
Confidence            899999998652    3 45567778899999885        1  999997 889999999999998764

>PRK05764 aspartate aminotransferase; Provisional

Probab=100.00  E-value=4.3e-44  Score=342.34  Aligned_cols=368  Identities=16%  Similarity=0.193  Sum_probs=287.6

Q ss_pred             cccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNK   82 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~   82 (407)
                      +|.+|+.+.+++++.++....+  ...+.++++|+.|.+   .. +.++.+.+++.+.+.   .....|++..|.+++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~-~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~   75 (393)
T PRK05764          3 KLSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEP---DF-DTPEHIKEAAIEALD---DGKTKYTPAAGIPELRE   75 (393)
T ss_pred             chhhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCC---CC-CCCHHHHHHHHHHHh---cCCCCcCCCCChHHHHH
Confidence            3677888888888766555443  233578999999986   33 444455555545553   22446988999999999


Q ss_pred             HHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435           83 LSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG  162 (407)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~  162 (407)
                      ++++++....+..+++++|++  |+|+++++.+++  ...+.+||.|++++|+|..+..+++.+|.+++.++++.+.++.
T Consensus        76 ~ia~~~~~~~~~~~~~~~i~~--~~g~~~a~~~~~--~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~  151 (393)
T PRK05764         76 AIAAKLKRDNGLDYDPSQVIV--TTGAKQALYNAF--MALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFK  151 (393)
T ss_pred             HHHHHHHHHhCCCCCHHHEEE--eCCcHHHHHHHH--HHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCc
Confidence            999999554455567799999  999999999884  4447899999999999999999999999999999985344577


Q ss_pred             cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH-HHc
Q 015435          163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF-VAD  241 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~-~~~  241 (407)
                      +|++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||+++|+|++|.++.+++.  ...++..+ .+.
T Consensus       152 ~d~~~l~~~l~--~~~~~v~~-~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~  226 (393)
T PRK05764        152 LTVEQLEAAIT--PKTKALIL-NSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGA--EFTSIASLSPEL  226 (393)
T ss_pred             CCHHHHHHhhC--ccceEEEE-ECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCC--CcccHHHcCCCC
Confidence            89999999886  56677666 89999999999999999999999999999999999999887532  11233322 233


Q ss_pred             CCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          242 GGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       242 ~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      .+++++++||||.++++|+|+||+  +++ ++    +...+.........+++.+.|.++..+++...      ++++++
T Consensus       227 ~~~~i~~~s~SK~~~~~G~RiG~i--~~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~  293 (393)
T PRK05764        227 RDRTITVNGFSKAYAMTGWRLGYA--AGP-KE----LIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQ------DEVEEM  293 (393)
T ss_pred             cCCEEEEecCcccccCccceeEEE--ecC-HH----HHHHHHHHHhhcccCCChHHHHHHHHHHcCCh------HHHHHH
Confidence            468999999999999999999999  444 44    44445445544555788889999888887321      556778


Q ss_pred             HHHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEecCCC----------HHHHHHhHhhccEEEcCCC--------eE
Q 015435          322 ADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTGLN----------SEQVAFMTKEYHIYMTSDG--------RI  382 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~~~~gg--------Ri  382 (407)
                      +++++++++.+.+.|++. +    +.+..|.+++|.|+.+.          .++...+++++||.+.+|.        ||
T Consensus       294 ~~~~~~~~~~l~~~L~~~~g----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRi  369 (393)
T PRK05764        294 RQAFEERRDLMVDGLNEIPG----LECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRL  369 (393)
T ss_pred             HHHHHHHHHHHHHHHhhCCC----CcccCCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEE
Confidence            888999999999999987 5    67778889999987542          3445677788999999862        99


Q ss_pred             EecCCCCCChhHHHHHHHHHHHhh
Q 015435          383 SMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       383 s~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +++. +++++++++++|.++++++
T Consensus       370 s~~~-~~~~~~~~i~~l~~~~~~~  392 (393)
T PRK05764        370 SYAT-SLEDLEEGLERIERFLESL  392 (393)
T ss_pred             EecC-CHHHHHHHHHHHHHHHHhh
Confidence            9986 8899999999999998865

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=100.00  E-value=6.4e-44  Score=340.59  Aligned_cols=358  Identities=15%  Similarity=0.155  Sum_probs=269.3

Q ss_pred             cccCCCCCchhhhhHhhh---hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            9 KIVRAPEDPILGVTVAYN---KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      ++...+.+.+......+.   +.++.+.++|+.|.+   .. +.|+.+.+++.+.+.    ....|+++.|.+++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p---~~-~~~~~~~~a~~~~~~----~~~~Y~~~~G~~~lr~aia   74 (393)
T TIGR03538         3 NLSRLQPYPFEKLAALLAGVTPPASKPPIALSIGEP---KH-PTPAFVLEALRENLH----GLSTYPTTKGLPELRQAIA   74 (393)
T ss_pred             hhhhCCccHHHHHHHHHHhhhhhcCCCeEEecCCCC---CC-CCCHHHHHHHHHHhh----ccCCCCCCCCCHHHHHHHH
Confidence            344455555555444443   235689999999986   32 334444444444432    3577999999999999999


Q ss_pred             HHHhCCCCCC--CCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCe--EEecCCCCCChHHHHhhcCceeeEEEeecCCC
Q 015435           86 KLILGADSPA--IKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLT--IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPAT  160 (407)
Q Consensus        86 ~~~~~~~~~~--~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~--Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~  160 (407)
                      +++...++..  ++++ +|++  |+|+++++.+++.  ..+.+||.  |++++|+|..|...++..|.+++.++++++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~i~i--t~Ga~~al~~~~~--~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~  150 (393)
T TIGR03538        75 RWLERRFDLPTGVDPERHVLP--VNGTREALFAFAQ--AVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENG  150 (393)
T ss_pred             HHHHHhhCCcccCCCCceEEE--CCCcHHHHHHHHH--HHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCC
Confidence            9996554443  5664 7999  9999999999853  34779986  99999999999999999999999999954445


Q ss_pred             CCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH-HHHH
Q 015435          161 RGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV-RMFV  239 (407)
Q Consensus       161 ~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~-~~~~  239 (407)
                      +.+|++++++++.  ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.. ...+. ..+.
T Consensus       151 ~~~d~~~l~~~~~--~~~k~i~l-~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~~~~  226 (393)
T TIGR03538       151 FLPDFDAVPESVW--RRCQLLFV-CSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGN-PPAGLLQAAA  226 (393)
T ss_pred             CCCCHHHHHHHHh--hcceEEEE-eCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCC-CCcCHHHhcc
Confidence            7789999999886  45677777 899999999999999999999999999999999999999875311 11111 1111


Q ss_pred             ----HcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHH
Q 015435          240 ----ADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWT  315 (407)
Q Consensus       240 ----~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  315 (407)
                          ...+++++++||||.|+++|+|+||+  +++ ++    +...+.........+++.+.|.++...+.+.       
T Consensus       227 ~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~--i~~-~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-------  292 (393)
T TIGR03538       227 QLGRDDFRRCLVFHSLSKRSNLPGLRSGFV--AGD-AE----ILKAFLRYRTYHGCAMPIPTQLASIAAWNDE-------  292 (393)
T ss_pred             cccccccccEEEEecchhhcCCcccceEEE--ecC-HH----HHHHHHHHHHhhccCcCHHHHHHHHHHhcCh-------
Confidence                12468999999999999999999999  565 44    4444444444334467788888887777543       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC--H-HHHHHhHhhccEEEcCC------------C
Q 015435          316 LELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN--S-EQVAFMTKEYHIYMTSD------------G  380 (407)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~l~~~gi~~~~g------------g  380 (407)
                      +++++.++.++++++.+.+.|++.     +.+..|.+|+|.|+.+.  . +++..+++++||.+.||            +
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~L~~~-----~~~~~p~gg~f~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~  367 (393)
T TIGR03538       293 QHVRENRALYREKFAAVLEILGQV-----LDLELPDAGFYLWPKVPGDDEAFARALYEEENVTVLPGRFLAREAEGVNPG  367 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-----CcccCCCeeEEEEEECCCCHHHHHHHHHHHCCEEEeCCccccccccCCCCC
Confidence            557788889999999999999764     24457889999999764  3 34556677799999654            1


Q ss_pred             ----eEEecCCCCCChhHHHHHHHHH
Q 015435          381 ----RISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       381 ----Ris~~~~~~e~i~~~~~~l~~~  402 (407)
                          ||+++. ++++++.++++|+++
T Consensus       368 ~~~~Ris~~~-~~~~l~~~l~~l~~~  392 (393)
T TIGR03538       368 EGRVRIALVA-PLEECVEAAERIRSF  392 (393)
T ss_pred             CCEEEEEecC-CHHHHHHHHHHHHHh
Confidence                899986 789999999999875

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07324 transaminase; Validated

Probab=100.00  E-value=1.5e-44  Score=341.83  Aligned_cols=334  Identities=16%  Similarity=0.114  Sum_probs=270.1

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      .++++++|+.|.+   +. +.|... ++...++.   ....+|++..|.+++|+++++++.+     +++++|++  |+|
T Consensus        24 ~~~~~~~~~~~e~---~~-~~~~~~-~~~~~~~~---~~~~~Y~~~~G~~~lr~~ia~~~~~-----~~~~~vi~--t~G   88 (373)
T PRK07324         24 AESCIDSLTLEEL---LA-LAGKNP-EAFYQELG---QKKLTYGWIEGSPEFKEAVASLYQN-----VKPENILQ--TNG   88 (373)
T ss_pred             ccCCCCCCcHHHH---Hh-ccCcch-HHHHHHHh---cCCccCCCCCCCHHHHHHHHHHhcC-----CChhhEEE--cCC
Confidence            4689999999987   33 445555 66666665   2345799999999999999999832     44689999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      +++++.+++  ...+.+||+|+++.|+|..+...++..|.+++.+|+..+.++.+|++++++.+.  ++++++++ ++||
T Consensus        89 ~~~al~~~~--~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~--~~~kli~i-~~p~  163 (373)
T PRK07324         89 ATGANFLVL--YALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVR--PNTKLICI-NNAN  163 (373)
T ss_pred             hHHHHHHHH--HHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCC--CCCcEEEE-eCCC
Confidence            999999985  444789999999999999999999999999999999544456789999998876  56777766 8999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      ||||.+++.+++++|+++|++||+++|+||+|.++.+++   +..++   ....+++|+++||||.||++|+|+||+  +
T Consensus       164 NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~---~~~s~---~~~~~~~I~~~s~SK~~~~~G~RiG~i--~  235 (373)
T PRK07324        164 NPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG---STPSI---ADLYEKGISTNSMSKTYSLPGIRVGWI--A  235 (373)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC---CCCCh---hhccCCEEEEecchhhcCCccceeEEE--e
Confidence            999999999999999999999999999999999988753   12222   223467899999999999999999999  5


Q ss_pred             ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 015435          269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI  348 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  348 (407)
                      ++ +    .+...+...+.....+++.+.|.++..++++.+      ..+++.++.++++++.+.+.|.+.+.   +.+.
T Consensus       236 ~~-~----~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~------~~l~~~~~~~~~~~~~l~~~l~~~~~---~~~~  301 (373)
T PRK07324        236 AN-E----EVIDILRKYRDYTMICAGVFDDMLASLALEHRD------AILERNRKIVRTNLAILDEWVAKEPR---VSYV  301 (373)
T ss_pred             cC-H----HHHHHHHHHhCcEEecCChHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHhcCCC---ceEE
Confidence            65 4    455555555555555778888988888887542      56778889999999999999987642   6677


Q ss_pred             cCCceeEEecCC----C-HHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          349 IKQIGMFTFTGL----N-SEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       349 ~~~~~~~~~~~~----~-~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      .|.+|++.|+.+    + .+++.++++++||.+.||.        ||+++. +++.+++++++|++++++
T Consensus       302 ~p~gg~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~-~~~~l~~~l~rl~~~l~~  370 (373)
T PRK07324        302 KPKAVSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCC-DTETLKKGLKKLSEFLRE  370 (373)
T ss_pred             CCCceEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence            888888766633    3 3467788888999999983        999996 788999999999999875

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=100.00  E-value=6.5e-44  Score=342.04  Aligned_cols=366  Identities=16%  Similarity=0.168  Sum_probs=278.8

Q ss_pred             CchhhhhHhhhh-cCCCCeeeeeeeeeecC-CCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCC--
Q 015435           16 DPILGVTVAYNK-DTSPVKLNLGVGAYRTE-EGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGA--   91 (407)
Q Consensus        16 ~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~--   91 (407)
                      .++.+...++.. ..++++|+|+.|.|... +. ..+..+.+++.+.+.  .....+|++..|.++||+++++++...  
T Consensus        17 ~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~-~p~~~~~~a~~~~~~--~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~   93 (412)
T PTZ00433         17 NPLRTVTDNAKPSPSPKSIIKLSVGDPTLDGNL-LTPAIQTKALVEAVD--SQECNGYPPTVGSPEAREAVATYWRNSFV   93 (412)
T ss_pred             ccHHHHHHhhccCCCCCCeeecCCcCCCCcCCC-CCCHHHHHHHHHHhh--cCCCCCCCCCCCcHHHHHHHHHHHHhhcc
Confidence            345555556653 46789999999987210 11 224444444444443  234567988889999999999999532  


Q ss_pred             ----CCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhh
Q 015435           92 ----DSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQG  167 (407)
Q Consensus        92 ----~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  167 (407)
                          .+..+++++|++  |+|+++++.+++.  ..+.+||+|+++.|+|..+...++..|++++.+++..+.++++|+++
T Consensus        94 ~~~~~~~~~~~~~i~i--t~G~~~al~~~~~--~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~  169 (412)
T PTZ00433         94 HKESLKSTIKKDNVVL--CSGVSHAILMALT--ALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDE  169 (412)
T ss_pred             ccccccCCCChhhEEE--eCChHHHHHHHHH--HhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHH
Confidence                234577899999  9999999999953  34779999999999999999999999999999998544467899999


Q ss_pred             HHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEE
Q 015435          168 LLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLV  247 (407)
Q Consensus       168 l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~  247 (407)
                      +++.+.  ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+. ...++++
T Consensus       170 l~~~~~--~~~~~i~~-~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~-~~~~~i~  243 (412)
T PTZ00433        170 IRRLVD--DRTKALIM-TNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGA--TFTSVADFD-TTVPRVI  243 (412)
T ss_pred             HHHHhc--cCceEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCC--Cccchhhcc-CCCceEE
Confidence            998886  45677766 89999999999999999999999999999999999999987642  122333332 1235799


Q ss_pred             EEecCccccccCCCcceeEEeecChh-hHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          248 AQSYAKNMGLYGERVGALSIVCKTED-VASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       248 ~~s~sK~~~~~G~r~G~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                      ++||||.|+++|+|+||+  ++.+++ ..+.+...+..... ...+++.+.|.++..++.+..     ..++++.+++++
T Consensus       244 ~~SfSK~~~~pGlRlG~~--i~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~-----~~~~~~~~~~~~  315 (412)
T PTZ00433        244 LGGTAKNLVVPGWRLGWL--LLVDPHGNGGDFLDGMKRLGM-LVCGPCSVVQAALGEALLNTP-----QEHLEQIVAKLE  315 (412)
T ss_pred             EccchhhcCCCCeeEEEE--EEeCCcccHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHhcCc-----HHHHHHHHHHHH
Confidence            999999999999999999  553321 12334554544432 234788889999988887521     256788889999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC----------HHHHHHhHhhccEEEcCCC--------eEEecCCC
Q 015435          327 SMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN----------SEQVAFMTKEYHIYMTSDG--------RISMAGLS  388 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~~~~gg--------Ris~~~~~  388 (407)
                      ++++.+.+.|++...   +.+..|.+|+|.|+.++          .+++..+++++||.+.||.        ||+++. +
T Consensus       316 ~~r~~l~~~L~~~~~---~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~-~  391 (412)
T PTZ00433        316 EGAMVLYNHIGECIG---LSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR-P  391 (412)
T ss_pred             HHHHHHHHHHhcCCC---CcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecC-C
Confidence            999999999987532   67778999999997552          2456677777899999973        999986 6


Q ss_pred             CCChhHHHHHHHHHHHhh
Q 015435          389 SKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~~~  406 (407)
                      ++++++++++|.+++++.
T Consensus       392 ~e~l~~al~~l~~~~~~~  409 (412)
T PTZ00433        392 VEVLREAVERIKAFCERH  409 (412)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            788999999999998753

>PRK08175 aminotransferase; Validated

Probab=100.00  E-value=1.1e-43  Score=339.00  Aligned_cols=366  Identities=17%  Similarity=0.239  Sum_probs=277.4

Q ss_pred             cccccCCCCCchhhhhHhhh---hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYN---KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      |+++...+++ .+...+...   .+.++++++|+.|.|   ++ +.++...+++.+.+.  ......|++..|.+++|++
T Consensus         3 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~l~~g~p---~~-~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~a   75 (395)
T PRK08175          3 FTRIDRLPPY-VFNITAELKMAARRRGEDIIDFSMGNP---DG-PTPPHIVEKLCEVAQ--RPDTHGYSTSRGIPRLRRA   75 (395)
T ss_pred             cchhhcCCch-HHHHHHHHHHHHHhcCCCeEEcCCCCC---CC-CCCHHHHHHHHHHHh--CCCcCCCCCCCCCHHHHHH
Confidence            4455444433 443333332   234578999999976   44 445556666666654  2345779999999999999


Q ss_pred             HHHHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435           84 SAKLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG  162 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~  162 (407)
                      +++++...++..++++ ++++  |+|+++++.++.  ...+.+||+|++++|+|+.+...++..|.+++.++++ ++  +
T Consensus        76 ia~~~~~~~g~~~~~~~~i~~--t~G~~~~l~~~~--~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~--~  148 (395)
T PRK08175         76 ISRWYQDRYDVDIDPESEAIV--TIGSKEGLAHLM--LATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLV-EG--V  148 (395)
T ss_pred             HHHHHHHHhCCCCCCCCcEEE--ccCcHHHHHHHH--HHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecc-cC--C
Confidence            9999965556666666 7999  999999999884  3447899999999999999999999999999999984 22  2


Q ss_pred             cChhhHHHHHHcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc
Q 015435          163 LNFQGLLEDLRAA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD  241 (407)
Q Consensus       163 ~d~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~  241 (407)
                      .+++++++++.+. ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+...
T Consensus       149 ~~~~~l~~~l~~~~~~~~~v~i-~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~--~~~~~~~~~~  225 (395)
T PRK08175        149 DFFNELERAIRESYPKPKMMIL-GFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWK--APSIMQVPGA  225 (395)
T ss_pred             CcHHHHHHHHhhccCCceEEEE-eCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCC--CcchhcCCCc
Confidence            3478888877643 34566666 799999999999999999999999999999999999998875421  2232222222


Q ss_pred             CCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          242 GGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       242 ~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      .+.+++++||||.||+||+|+||+  ++ ++++.+    .+.........+++.+.|.++..++.+..      ++++++
T Consensus       226 ~~~~i~~~S~SK~~g~pGlRiG~~--~~-~~~l~~----~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~  292 (395)
T PRK08175        226 KDVAVEFFTLSKSYNMAGWRIGFM--VG-NPELVS----ALARIKSYHDYGTFTPLQVAAIAALEGDQ------QCVRDI  292 (395)
T ss_pred             ccCEEEEeeccccccCcchhheee--eC-CHHHHH----HHHHHHhhcccCCCcHHHHHHHHHHhCcH------HHHHHH
Confidence            456889999999999999999999  45 455444    44444443344667778888888886532      567888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC--------HHHHHHhHhhccEEEcCCC----------eEE
Q 015435          322 ADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN--------SEQVAFMTKEYHIYMTSDG----------RIS  383 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~gi~~~~gg----------Ris  383 (407)
                      ++.++++++++.+.|+..+    +.+..|.+|+|.|+.+.        .+++..+++++||.+.||.          ||+
T Consensus       293 ~~~~~~~~~~~~~~L~~~~----~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis  368 (395)
T PRK08175        293 AEQYKRRRDVLVKGLHEAG----WMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFA  368 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcC----CcccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEE
Confidence            9999999999999999886    67777889999999653        2345567778999999961          999


Q ss_pred             ecCCCCCChhHHHHHHHHHHHhhC
Q 015435          384 MAGLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       384 ~~~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      ++. +++.++.++++|++++++.|
T Consensus       369 ~~~-~~~~~~~al~~l~~~l~~~~  391 (395)
T PRK08175        369 LIE-NRDRIRQAIRGIKAMFRADG  391 (395)
T ss_pred             eCC-CHHHHHHHHHHHHHHHHhcC
Confidence            984 78999999999999998754

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-43  Score=309.32  Aligned_cols=367  Identities=13%  Similarity=0.143  Sum_probs=297.4

Q ss_pred             CchhhhhHhhh----hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCC
Q 015435           16 DPILGVTVAYN----KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGA   91 (407)
Q Consensus        16 ~~~~~~~~~~~----~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~   91 (407)
                      ..+++....+.    ....+.+|.++.|.|..-.-.+..+...+++.+++.  .+...+|+|..|+...|+++|++++..
T Consensus        42 ~tir~i~~~l~~~~~p~~~k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~--Sgk~N~Yaps~G~~~AR~AVAeYl~~~  119 (447)
T KOG0259|consen   42 VTIRGILSALFDCCDPEKKKPILPLGHGDPSVYPCFRTSQEAEQAVVDALR--SGKGNGYAPSVGILPARRAVAEYLNRD  119 (447)
T ss_pred             ccHHHHHHHHhhcCCcccCceeccCCCCCCCccccccCCHHHHHHHHHHHh--cCCCCCcCCccccHHHHHHHHHHhhcC
Confidence            34555554443    222348899999987321122335566777777776  566788999999999999999998777


Q ss_pred             CCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHH
Q 015435           92 DSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLED  171 (407)
Q Consensus        92 ~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~  171 (407)
                      ....+++++|++  |+|.++|+++++..  +..+|..|++|.|+|+.|...+...|+.++++++-.+.+|.+|++.++..
T Consensus       120 l~~kl~a~DV~l--tsGC~qAIe~~i~~--LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal  195 (447)
T KOG0259|consen  120 LPNKLTADDVVL--TSGCSQAIELAISS--LANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEAL  195 (447)
T ss_pred             CCCccCcCceEE--eccchHHHHHHHHH--hcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHh
Confidence            777889999999  99999999999544  46799999999999999999999999999999987677899999999999


Q ss_pred             HHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          172 LRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       172 i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                      ++  ++|.+++| .||+||+|.+++.+.|++|+++|+|+++.+|.||+|.+++|++.  +..++..+. .--.++.++|.
T Consensus       196 ~D--ENT~Aivv-iNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~--pfvpmg~fs-siVPVitlggi  269 (447)
T KOG0259|consen  196 AD--ENTVAIVV-INPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDK--PFVPMGKFS-SIVPVITLGGI  269 (447)
T ss_pred             hc--cCeeEEEE-eCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCC--Cccchhhcc-ccCceEeeccc
Confidence            98  67888888 89999999999999999999999999999999999999999864  445555442 24578999999


Q ss_pred             CccccccCCCcceeEEeecChh--hHH-HHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435          252 AKNMGLYGERVGALSIVCKTED--VAS-RVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       252 sK~~~~~G~r~G~~~~v~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  328 (407)
                      ||-|-.||||+||+  +..|+.  +.+ .....+..+.+ ....|.++.|.|.-..|..-.     +++.+.....++.+
T Consensus       270 sKrW~VPGWRlGWi--~~hD~~gvf~~~~~~q~~~~~~~-~~~~p~TiiQ~AlP~IL~kTp-----~efF~k~~~~lk~n  341 (447)
T KOG0259|consen  270 SKRWIVPGWRLGWI--ALHDPRGVFRDTKVVQGIKNFLD-IIPGPATIIQGALPDILEKTP-----EEFFDKKLSFLKSN  341 (447)
T ss_pred             ccccccCCceeeeE--EEecccccccchHHHHHHHHHHh-ccCCccHhHHHHhHHHHHhCh-----HHHHHHHHHHHHhh
Confidence            99999999999999  455543  111 11223333322 234889999999999998643     26788888999999


Q ss_pred             HHHHHHHHHhcCCCCCcc-cccCCceeEEecCC----------CHHHHHHhHhhccEEEcCCC--------eEEecCCCC
Q 015435          329 RQQLFDALSARGTPGDWS-HIIKQIGMFTFTGL----------NSEQVAFMTKEYHIYMTSDG--------RISMAGLSS  389 (407)
Q Consensus       329 ~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~  389 (407)
                      .+...+.|.+++.   +. ...|.|.+|.|+++          +.++...+.+|..+.+.||.        |+++.. +.
T Consensus       342 a~l~y~~Lk~IP~---l~cp~kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~-~~  417 (447)
T KOG0259|consen  342 ADLCYSRLKDIPC---LTCPVKPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITV-EE  417 (447)
T ss_pred             HHHHHHHHhcCCC---cccCcCCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEcc-Ch
Confidence            9999999999874   55 77999999999966          45788999999999999983        999995 88


Q ss_pred             CChhHHHHHHHHHHHhh
Q 015435          390 KTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~~  406 (407)
                      +.+++++.||+++.++.
T Consensus       418 ~~leea~~Rik~Fc~RH  434 (447)
T KOG0259|consen  418 EMLEEAFSRIKEFCDRH  434 (447)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999998763

>PRK08637 hypothetical protein; Provisional

Probab=100.00  E-value=6.7e-43  Score=332.63  Aligned_cols=359  Identities=20%  Similarity=0.294  Sum_probs=273.0

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCC---CCceEEeecC
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIK---DNRVTTVQCL  107 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~---~~~i~~~~t~  107 (407)
                      .+.+|.++|...+..+ |.+.+.+.++.....  .....+|+++.|.+++|+.+++++..... ...   .++|++  |+
T Consensus         3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~i--t~   76 (388)
T PRK08637          3 ATKYNATIGMATEKGG-PMYLSSLQDLLNDLT--PDEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIV--TN   76 (388)
T ss_pred             ccceecceeeEecCCC-cchHHHHHHHHHhhc--cccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeE--cc
Confidence            4788999998855444 777777777776653  34577899999999999999999865432 222   267899  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCceeeEEEeecCCCCCcChhhHHHHHHc-CCCCcEEEEec
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLSVKTYRYYDPATRGLNFQGLLEDLRA-APSGAIVLLHA  185 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~~~v~i~~  185 (407)
                      |+++++.++...  .+.+||+|++++|+|+.|...+. ..|.+++.+|+. .+++++|++++++.+.. .++.+.+++++
T Consensus        77 G~~~al~~~~~~--l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~-~~~~~~d~~~l~~~~~~~~~~~~~~~~~~  153 (388)
T PRK08637         77 ALTHGLSLVADL--FVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIF-DEDGGFDTDALKEALQAAYNKGKVIVILN  153 (388)
T ss_pred             chHHHHHHHHHH--hcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEeccc-CCCCcCCHHHHHHHHHhhccCCCEEEEEe
Confidence            999999998533  36799999999999999998765 689999999983 23468999999998761 12345556669


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHH-----cCceeeeccccccccCCCCCchhHHH-HHHHHcCCcE--EEEEecCccccc
Q 015435          186 CAHNPTGVDPTLEQWEQIRQLMRS-----KGLLPFFDSAYQGFASGSLDADAQSV-RMFVADGGEC--LVAQSYAKNMGL  257 (407)
Q Consensus       186 ~p~NPtG~~~~~~~l~~i~~~~~~-----~~~~li~D~~y~~~~~~~~~~~~~~~-~~~~~~~~~~--i~~~s~sK~~~~  257 (407)
                      +||||||.+++.+++++|+++|++     |+++||+||+|.++.+++.  ...++ ..+.+..+++  ++++|+||.+++
T Consensus       154 ~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~--~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~  231 (388)
T PRK08637        154 FPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDS--YKESLFAALANLHSNILAVKLDGATKEEFV  231 (388)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCc--cchhhHHHhhcccccceEEEeccccccCCC
Confidence            999999999999999999999886     8999999999999988653  22222 2222334564  455699999999


Q ss_pred             cCCCcceeEEeec-----ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 015435          258 YGERVGALSIVCK-----TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQL  332 (407)
Q Consensus       258 ~G~r~G~~~~v~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (407)
                      ||+|+||+  +++     ++++.+.+...+....+....+++.+.|.++..++++..    |.++..+.++.++++++.+
T Consensus       232 pGlRlG~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~----~~~~~~~~~~~~~~r~~~~  305 (388)
T PRK08637        232 WGFRVGFI--TFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPE----FDKEKQEKFQILKERYEKT  305 (388)
T ss_pred             cccceEEE--EEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHH
Confidence            99999999  454     356665555433222222334788999999999998763    4566677778899999999


Q ss_pred             HHHHHhcCCCCCcccccCCceeEEecCCCH----HHHHHhHhhccEEEcCCC----eEEecCCCCCChhHHHHHHHHHHH
Q 015435          333 FDALSARGTPGDWSHIIKQIGMFTFTGLNS----EQVAFMTKEYHIYMTSDG----RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       333 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gi~~~~gg----Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      .+.++..+.+..+.+.++.+|+|.|+.+..    +++..+++++||.+.+.+    ||+++..++++++.++++|+++++
T Consensus       306 ~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~~~~~~i~~~~~~l~~~~~  385 (388)
T PRK08637        306 KEVLYDGKYDDAWQAYPFNSGYFMCLKLKGVDAEELRVHLLEKYGIGTIALNETDLRIAFSCVEEEDIPELFDSIYKAIK  385 (388)
T ss_pred             HHHHHhhCCCCCcccccccceEEEEecCChHHHHHHHHHHhhhcceEEEeccCCceEEEeecCCHHHHHHHHHHHHHHHH
Confidence            998876532223677888999999997742    334566677899887643    999987788999999999999987


Q ss_pred             hh
Q 015435          405 RM  406 (407)
Q Consensus       405 ~~  406 (407)
                      .+
T Consensus       386 ~~  387 (388)
T PRK08637        386 DL  387 (388)
T ss_pred             hc
Confidence            65

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=3.4e-43  Score=341.08  Aligned_cols=346  Identities=16%  Similarity=0.193  Sum_probs=265.0

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHH-Hh----c-----cccccccCCCCCCcHHHHHHHHHHHhCCCC--CCCCC
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQL-LV----N-----DQSRVKEYLPIVGLVDFNKLSAKLILGADS--PAIKD   98 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~----~-----~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~--~~~~~   98 (407)
                      ..+|+|+..+    +  +...+.+...+.. ..    .     ...+...|.+..|.+++|+++|+++...++  ..+++
T Consensus        46 ~g~i~l~~aE----N--~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~p  119 (496)
T PLN02376         46 HGIIQMGLAE----N--QLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDP  119 (496)
T ss_pred             CceEEeecch----h--hhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCCh
Confidence            4799999875    2  4433333322221 11    0     112345688889999999999999965444  45778


Q ss_pred             CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCceeeEEEeecCCCCCcChhhHHHHHHc---
Q 015435           99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLSVKTYRYYDPATRGLNFQGLLEDLRA---  174 (407)
Q Consensus        99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~---  174 (407)
                      ++|++  |+|+++++++++  ...+.+||.|++++|+|+.+...+. ..|++++.+++...++++++++.+++++..   
T Consensus       120 e~Ivi--t~Ga~~al~~l~--~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~  195 (496)
T PLN02376        120 ERVVM--SGGATGANETIM--FCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQE  195 (496)
T ss_pred             hhEEE--ccchHHHHHHHH--HHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHh
Confidence            99999  999999999995  4457899999999999999999888 589999999995445678999999876532   


Q ss_pred             -CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc-------CCcEE
Q 015435          175 -APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD-------GGECL  246 (407)
Q Consensus       175 -~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~-------~~~~i  246 (407)
                       ..+.+++++ ++||||||++++.+++++|+++|++||++||+||+|.++.+.+.  +..++..+...       .+.++
T Consensus       196 ~~~~~k~l~l-~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~--~~~si~~l~~~~~~~~~~~~~v~  272 (496)
T PLN02376        196 SNKKVKGLIL-TNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGG--DFVSVAEVVNDVDISEVNVDLIH  272 (496)
T ss_pred             cCCCeeEEEE-cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC--CcccHHHhhccccccccCCCeEE
Confidence             134566666 89999999999999999999999999999999999999987643  23344333221       13567


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                      +++||||.||+||+|+||+  +++++.+.+.    +.....  ....+.+.|.++..++++....   .+++.+.+++++
T Consensus       273 vv~S~SK~~glpGlRvG~l--i~~~~~l~~~----~~~~~~--~~~vs~~~Q~a~~~~L~d~~~~---~~~l~~~r~~l~  341 (496)
T PLN02376        273 IVYSLSKDMGLPGFRVGIV--YSFNDSVVSC----ARKMSS--FGLVSSQTQLMLASMLSDDQFV---DNFLMESSRRLG  341 (496)
T ss_pred             EEEeccccCCCCcceEEEE--EECCHHHHHH----HHHHhh--cCCCCHHHHHHHHHHhCChhHH---HHHHHHHHHHHH
Confidence            8999999999999999999  6765554333    222222  2357888999999999876421   356778889999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC------------HHHHHHhHhhccEEEcCCC----------eEEe
Q 015435          327 SMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN------------SEQVAFMTKEYHIYMTSDG----------RISM  384 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~~~~gg----------Ris~  384 (407)
                      ++++.+.+.|++.+    +.+..+.+|+|+|+++.            .++...+++++||.+.||.          ||++
T Consensus       342 ~r~~~l~~~L~~~g----i~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~f  417 (496)
T PLN02376        342 IRHKVFTTGIKKAD----IACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICF  417 (496)
T ss_pred             HHHHHHHHHHHHCC----CcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEe
Confidence            99999999999877    67788899999999762            1234456777899999972          9999


Q ss_pred             cCCCCCChhHHHHHHHHHHH
Q 015435          385 AGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       385 ~~~~~e~i~~~~~~l~~~l~  404 (407)
                      +..+++.++.++++|+++++
T Consensus       418 a~~~~~~l~~al~rl~~~l~  437 (496)
T PLN02376        418 ANMDDDTLHVALGRIQDFVS  437 (496)
T ss_pred             eCCCHHHHHHHHHHHHHHHH
Confidence            97677899999999999885

>PRK07550 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-43  Score=337.10  Aligned_cols=364  Identities=17%  Similarity=0.157  Sum_probs=277.3

Q ss_pred             cccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      .+|+....+.++.++.+.+.  .+.+...|+|+.|.+   .. +.+....+...+.+.  ......|.+..|.+++|+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~---~~-~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~~i   76 (386)
T PRK07550          3 NPLIAALFPPPIPEVRAWLAGYDGADGPLIDLSQAVP---GY-PPPPELLRALAEAAA--DPAAHLYGPVEGLPELREAY   76 (386)
T ss_pred             chhhhhcCChHHHHHHHHHHHHhhcCCCeEEeCCCCC---CC-CCCHHHHHHHHHHHh--CcCCcCCCCCCCCHHHHHHH
Confidence            35566666667777665544  234678999999986   22 333344443333333  23456798889999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      ++++....+..+++++|++  |+|+++++.+++..  .+.+||+|++++|+|..+...++..|++++.++++.+.++.+|
T Consensus        77 a~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~~--l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~  152 (386)
T PRK07550         77 AAHYSRLYGAAISPEQVHI--TSGCNQAFWAAMVT--LAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPD  152 (386)
T ss_pred             HHHHHHHhCCCCCcceEEE--ecCcHHHHHHHHHH--hcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCC
Confidence            9999665566677899999  99999999988533  3679999999999999999999999999999998533456789


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++++.++  ++++++++ ++||||||.+++.+++++|+++|++||+++|+|++|.++.+++.  ...+.........+
T Consensus       153 ~~~l~~~~~--~~~~~v~~-~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~--~~~~~~~~~~~~~~  227 (386)
T PRK07550        153 PAAAEALIT--PRTRAIAL-VTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGG--APHDLFADPDWDDT  227 (386)
T ss_pred             HHHHHHHhc--ccCcEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC--CCcchhhCCCcccc
Confidence            999999887  45677776 68999999999999999999999999999999999998875421  11222111123467


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +++++||||.++++|+|+||+  +++ +    .+...+.........+++.++|.++..++++.      .+++++.++.
T Consensus       228 ~i~~~S~SK~~g~~G~RiG~i--~~~-~----~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~------~~~~~~~~~~  294 (386)
T PRK07550        228 LVHLYSFSKSYALTGHRVGAV--VAS-P----ARIAEIEKFMDTVAICAPRIGQIAVAWGLPNL------ADWRAGNRAE  294 (386)
T ss_pred             EEEEecchhhccCcccceEee--ecC-H----HHHHHHHHHHhhcccCCCcHHHHHHHHHhccH------HHHHHHHHHH
Confidence            999999999999999999999  565 3    34444555555555678889999999888753      2556777889


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CH-HHHHHhHhhccEEEcCCC----------eEEecCCC
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NS-EQVAFMTKEYHIYMTSDG----------RISMAGLS  388 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~~~~gg----------Ris~~~~~  388 (407)
                      ++++++.+.+.|+....   +.+ .+.+++|.|+.+     +. +++.++++++||.+.||.          ||+++..+
T Consensus       295 ~~~~~~~l~~~L~~~~~---~~~-~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~  370 (386)
T PRK07550        295 IARRRDAFRAVFARLPG---WEL-LASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANAD  370 (386)
T ss_pred             HHHHHHHHHHHHHhCCC---cee-CCCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCC
Confidence            99999999999988631   443 356889999844     33 345567788999999862          99998767


Q ss_pred             CCChhHHHHHHHHH
Q 015435          389 SKTVPHLTDAIHAA  402 (407)
Q Consensus       389 ~e~i~~~~~~l~~~  402 (407)
                      ++++++++++|.++
T Consensus       371 ~~~~~~~~~~l~~~  384 (386)
T PRK07550        371 VAGIGELVERLRAF  384 (386)
T ss_pred             HHHHHHHHHHHHhh
Confidence            88999999999764

>PRK09082 methionine aminotransferase; Validated

Probab=100.00  E-value=5.3e-44  Score=340.13  Aligned_cols=336  Identities=15%  Similarity=0.177  Sum_probs=264.5

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCC-ceEEeecCCc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDN-RVTTVQCLSG  109 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t~g~  109 (407)
                      .++|+|+.|.+   +. +.++.+.+.+.+.+.   ....+|.+..|.+++|+++++++....+...+++ +|++  |+|+
T Consensus        30 ~~~i~l~~g~~---~~-~~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~--t~G~  100 (386)
T PRK09082         30 HGAINLSQGFP---DF-DGPPYLVEALAYAMA---AGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITV--TAGA  100 (386)
T ss_pred             CCEEEecCCCC---CC-CCCHHHHHHHHHHHH---cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCH
Confidence            57899999985   33 334444444444443   2346798899999999999999855445445554 7999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++.+++  ...+.+||+|+++.|+|..+...++..|.+++.++++ ++++.+|++++++.+.  ++++++++ ++|||
T Consensus       101 ~~al~~~~--~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~--~~~~~v~l-~~p~N  174 (386)
T PRK09082        101 TEALFAAI--LALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQ-PPDFRVDWQRFAAAIS--PRTRLIIL-NTPHN  174 (386)
T ss_pred             HHHHHHHH--HHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC-cccccCCHHHHHHhcC--ccceEEEE-eCCCC
Confidence            99999985  4447899999999999999999999999999999994 4568899999999886  55677766 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||.+++.+++++|+++|++||+++|+|++|.++.+++.  ...++..+....+++++++||||.||++|+|+||+  ++
T Consensus       175 PtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~i--v~  250 (386)
T PRK09082        175 PSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGA--GHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYC--VA  250 (386)
T ss_pred             CCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCC--CCCChhhCcCccCcEEEEeechhhccchhhhhhhh--hC
Confidence            999999999999999999999999999999999988542  12233333233568999999999999999999999  56


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      + ++    +...+.........+++.+.|.++..+++..+      ++++++++.++++++++.+.|++.+    +.+.+
T Consensus       251 ~-~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~L~~~~----~~~~~  315 (386)
T PRK09082        251 P-AA----LSAEFRKVHQYNTFTVNTPAQLALADYLRAEP------EHYLELPAFYQAKRDRFRAALANSR----FKLLP  315 (386)
T ss_pred             C-HH----HHHHHHHHHhhhcCCCChHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHHhCC----CcccC
Confidence            5 44    44445545444455788889998888886322      5567788899999999999999876    77788


Q ss_pred             CCceeEEecCC------CH-HHHHHhHhhccEEEcCCC------------eEEecCCCCCChhHHHHHHHH
Q 015435          350 KQIGMFTFTGL------NS-EQVAFMTKEYHIYMTSDG------------RISMAGLSSKTVPHLTDAIHA  401 (407)
Q Consensus       350 ~~~~~~~~~~~------~~-~~~~~~l~~~gi~~~~gg------------Ris~~~~~~e~i~~~~~~l~~  401 (407)
                      +.+|+|.|+.+      +. ++...+++++||.+.||.            ||+++. +++++++++++|++
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~-~~~~l~~~~~rl~~  385 (386)
T PRK09082        316 CEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK-QEETLDAAAERLCQ  385 (386)
T ss_pred             CCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence            89999999754      23 345567788999998861            999996 78889999998875

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-43  Score=311.50  Aligned_cols=346  Identities=14%  Similarity=0.148  Sum_probs=294.1

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      +.++++-+++..+   +. +.|+++++++.+.+.   ....+|+  .+.+++.+++++|+...++..++++-|++  ++|
T Consensus        23 g~~DvlPmWVADM---Df-~~pp~i~~Al~~rvd---hGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~--~p~   91 (388)
T COG1168          23 GNEDVLPMWVADM---DF-PTPPEIIEALRERVD---HGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVF--VPG   91 (388)
T ss_pred             CCCCcceeeeecc---cC-CCCHHHHHHHHHHHh---cCCCCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEE--cCc
Confidence            4589999999986   66 889899988888886   2345563  77889999999999888888899999999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec-CCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD-PATRGLNFQGLLEDLRAAPSGAIVLLHACA  187 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p  187 (407)
                      .-.++..+++.+  ..+||.|++..|.|+++...+...|.+++..|+.. ...+.+|++.|++++.  .....++++|||
T Consensus        92 VVpgi~~~I~~~--T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~--~~~vkl~iLCnP  167 (388)
T COG1168          92 VVPGISLAIRAL--TKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFV--DERVKLFILCNP  167 (388)
T ss_pred             chHhHHHHHHHh--CcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHh--cCCccEEEEeCC
Confidence            999999995444  77999999999999999999999999999999863 3335779999999998  344444555999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH-HHcCCcEEEEEecCccccccCCCcceeE
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF-VADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      |||||.+++.++|.+|.++|++||++||+||+|+++++.+.  .+.+...+ ....++.+++.|.||+|+++|++++++ 
T Consensus       168 HNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~--~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~-  244 (388)
T COG1168         168 HNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH--KHIPFASLSERFADNSITLTSASKTFNLAGLKCAYI-  244 (388)
T ss_pred             CCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC--CccchhhcChhhhcceEEEeeccccccchhhhheeE-
Confidence            99999999999999999999999999999999999999863  23333322 234588999999999999999999999 


Q ss_pred             EeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCc
Q 015435          267 IVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR-GTPGDW  345 (407)
Q Consensus       267 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~  345 (407)
                       +.+|+++++++.+++....   ..+++.+++.+...+++.+.      .+++++++.++.|++++.+.+++. +.   +
T Consensus       245 -Ii~n~~lr~~~~~~l~~~~---~~~~n~lg~~A~~aAY~~G~------~WLd~L~~yl~~N~~~~~~~l~~~~P~---v  311 (388)
T COG1168         245 -IISNRELRAKFLKRLKRNG---LHGPSALGIIATEAAYNQGE------PWLDELLEYLKDNRDYVADFLNKHLPG---V  311 (388)
T ss_pred             -EecCHHHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHhch------HHHHHHHHHHHHHHHHHHHHHHhhCCC---c
Confidence             7999999888888777443   34889999999999999885      789999999999999999999985 32   7


Q ss_pred             ccccCCceeEEecCC-----CH-HHHHHhHhhccEEEcCC------C----eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          346 SHIIKQIGMFTFTGL-----NS-EQVAFMTKEYHIYMTSD------G----RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       346 ~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~~~~g------g----Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+..|+|.|..|+++     +. +....++++.+|.+.+|      |    |++++. +..-+++++++|+.+++..
T Consensus       312 ~v~~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac-pr~~L~eal~ri~~al~~~  387 (388)
T COG1168         312 KVTEPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC-PRAILEEALERLKRALKKR  387 (388)
T ss_pred             EEecCCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC-CHHHHHHHHHHHHHHHhcc
Confidence            899999999999844     54 45667889899999987      2    999997 8999999999999998754

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=2.3e-43  Score=338.66  Aligned_cols=349  Identities=15%  Similarity=0.218  Sum_probs=268.7

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhc----------cccccccCCCCCCcHHHHHHHHHHHhCCCC--CCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN----------DQSRVKEYLPIVGLVDFNKLSAKLILGADS--PAI   96 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~--~~~   96 (407)
                      +...+|+|+.++    |  ......+...+..-.+          ...+...|.+..|.++||+++|+++...++  ..+
T Consensus        45 np~g~i~l~~ae----N--~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v  118 (447)
T PLN02607         45 NPSGVIQMGLAE----N--QVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARF  118 (447)
T ss_pred             CCCceEEEechh----h--hhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCc
Confidence            335699999886    2  3444444444433210          011234477788999999999999965433  357


Q ss_pred             CCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435           97 KDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLSVKTYRYYDPATRGLNFQGLLEDLRAA  175 (407)
Q Consensus        97 ~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~  175 (407)
                      ++++|++  |+|++++++++.  ...+.+||.|+++.|+|+.+...+. ..|+++++|++...+++.+|++++++++.+.
T Consensus       119 ~p~~Ivi--t~G~t~al~~l~--~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a  194 (447)
T PLN02607        119 DPDRIVL--TAGATAANELLT--FILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEA  194 (447)
T ss_pred             CHHHeEE--cCChHHHHHHHH--HHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHH
Confidence            8899999  999999999984  4447899999999999999998887 5899999999854445678999999988641


Q ss_pred             ----CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH------cCCcE
Q 015435          176 ----PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA------DGGEC  245 (407)
Q Consensus       176 ----~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~------~~~~~  245 (407)
                          .+.+++++ +|||||||.+++++++++|+++|++|+++||+||+|+.+.+++.  +..++..+..      ..+++
T Consensus       195 ~~~~~~vk~lll-~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~--~f~S~~s~~~~~~~~~~~~~v  271 (447)
T PLN02607        195 EAANIRVRGVLI-TNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSAS--EFVSVAEIVEARGYKGVAERV  271 (447)
T ss_pred             HHhCCCeeEEEE-eCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC--CcccHHHHHhhcCCCCCcCcE
Confidence                24566666 99999999999999999999999999999999999999887642  2334433321      14689


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                      +++.||||.||++|+|+||+  ++.++++...    +.....  ...++.+.|.++..+|++..+.+   +++...++++
T Consensus       272 ~vi~s~SK~fg~~GlRvG~i--vs~n~~l~~~----~~~~~~--~~~~s~~~q~~~~~~L~d~~~~~---~~l~~~r~~l  340 (447)
T PLN02607        272 HIVYSLSKDLGLPGFRVGTI--YSYNDKVVTT----ARRMSS--FTLVSSQTQHLLASMLSDEEFTE---NYIRTNRERL  340 (447)
T ss_pred             EEEEcchhcCCCCcceEEEE--EEcCHHHHHH----HHHHhh--cCCCCHHHHHHHHHHhCCchhHH---HHHHHHHHHH
Confidence            99999999999999999999  5756554333    332321  22567788999999999875322   4577888999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCH-----------HHHHHhHhhccEEEcCCC----------eEEe
Q 015435          326 ISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNS-----------EQVAFMTKEYHIYMTSDG----------RISM  384 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~~~~gg----------Ris~  384 (407)
                      +++++.+.+.|++.+    +.+..+++|+|+|+++..           +...++++++||.+.||.          ||+|
T Consensus       341 ~~~~~~~~~~L~~~g----i~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~f  416 (447)
T PLN02607        341 RKRYEMIVQGLRRAG----IECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCF  416 (447)
T ss_pred             HHHHHHHHHHHHhCC----CCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEe
Confidence            999999999999887    677889999999997731           123467777899999972          9999


Q ss_pred             cCCCCCChhHHHHHHHHHHHh
Q 015435          385 AGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       385 ~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +.++++.++.++++|.+++++
T Consensus       417 a~~~~~~l~~gl~Ri~~~l~~  437 (447)
T PLN02607        417 ANMSEDTLEVALKRIHRFMDR  437 (447)
T ss_pred             ccCCHHHHHHHHHHHHHHHHH
Confidence            976789999999999999864

>PRK09265 aminotransferase AlaT; Validated

Probab=100.00  E-value=3.7e-43  Score=336.39  Aligned_cols=373  Identities=16%  Similarity=0.158  Sum_probs=277.1

Q ss_pred             ccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            8 GKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      +++...+++.+..+...++  ...+.++++|+.|.|. +.+.+.++.+.+++.+.+.    ....|+++.|.+++|++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~-~~~~~~~~~i~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia   82 (404)
T PRK09265          8 SKLENVCYDIRGPVLKEAKRLEEEGHKILKLNIGNPA-PFGFEAPDEILRDVIRNLP----TAQGYSDSKGLFSARKAIM   82 (404)
T ss_pred             HHHHhcCcchhHHHHHHHHHHHHcCCCeEEecCCCCC-cCCCCCCHHHHHHHHHHhh----cCCCCCCCCCcHHHHHHHH
Confidence            4444444443433333333  3356799999999761 1122455566666665553    2467999999999999999


Q ss_pred             HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435           86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF  165 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  165 (407)
                      +++.......+++++|++  |+|+++++.+++  ...+.+||+|++++|+|..+...++..|.+++.++++.+.++.+|+
T Consensus        83 ~~~~~~~~~~~~~~~i~~--t~G~~~~l~~~~--~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~  158 (404)
T PRK09265         83 QYYQQKGIPDVDVDDIYI--GNGVSELIVMAM--QALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDL  158 (404)
T ss_pred             HHHhccCCCCCCcccEEE--eCChHHHHHHHH--HHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCH
Confidence            999543333577899999  999999999884  3347899999999999999999999999999999874334567899


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +++++.+.  ++++++++ ++||||||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+. ...++
T Consensus       159 ~~l~~~~~--~~~~~v~l-~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~-~~~~v  232 (404)
T PRK09265        159 DDIRSKIT--PRTKAIVI-INPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGA--VHISIASLA-PDLLC  232 (404)
T ss_pred             HHHHHhcc--ccceEEEE-ECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCC--CcCCHHHcC-CCceE
Confidence            99999886  55667666 79999999999999999999999999999999999999987542  122332221 23468


Q ss_pred             EEEEecCccccccCCCcceeEEee-cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVC-KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      ++++||||.|++||+|+||+  ++ .+++..+.+.+.+... .....+++.++|.++..+|.+.+.   + +...+.+++
T Consensus       233 i~~~S~SK~~~~pGlRiG~~--v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~---~-~~~~~~~~~  305 (404)
T PRK09265        233 VTFNGLSKAYRVAGFRVGWM--VLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQS---I-NELILPGGR  305 (404)
T ss_pred             EEEecchhhccCcccceEEE--EEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchh---H-HHHHHHHHH
Confidence            99999999999999999999  55 3454444455544332 223347788899999998875421   1 122222346


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC---------HHHHHHhHhhccEEEcCCC----------eEEec
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN---------SEQVAFMTKEYHIYMTSDG----------RISMA  385 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~gi~~~~gg----------Ris~~  385 (407)
                      ++++++.+.+.|++.+.   +.+..|.+|+|.|+.++         .+++.+++.++||.+.||.          ||+++
T Consensus       306 ~~~~r~~~~~~L~~~~~---~~~~~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~  382 (404)
T PRK09265        306 LYEQRDRAWELLNAIPG---VSCVKPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL  382 (404)
T ss_pred             HHHHHHHHHHHHhcCCC---CcccCCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC
Confidence            77788999999987632   67788999999997552         3457788888999998861          99997


Q ss_pred             CCCCCChhHHHHHHHHHHHhh
Q 015435          386 GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       386 ~~~~e~i~~~~~~l~~~l~~~  406 (407)
                       .++++++.++++|+++++..
T Consensus       383 -~~~e~l~~~l~rl~~~l~~~  402 (404)
T PRK09265        383 -PRVDDLEEAIGRIGRFLSGY  402 (404)
T ss_pred             -CCHHHHHHHHHHHHHHHHHh
Confidence             48899999999999988753

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=100.00  E-value=2.4e-43  Score=337.41  Aligned_cols=368  Identities=14%  Similarity=0.165  Sum_probs=282.4

Q ss_pred             CCCchhhhhHhhhhc--CCCCeeeeeeeeeec-CCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhC
Q 015435           14 PEDPILGVTVAYNKD--TSPVKLNLGVGAYRT-EEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILG   90 (407)
Q Consensus        14 ~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~   90 (407)
                      ..++|.++...++++  ++.++++|+.|.|.. ++. +.++...+++.+.+.  ......|.+..|.+++|+++++++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~-~~~~~~~~~~~~~l~--~~~~~~Y~~~~g~~~lr~~ia~~l~~   88 (403)
T TIGR01265        12 TVNPIRAIVDNLKVKPNPEKPIIPLSHGDPSVFGNL-RTDPEAEEAVKDALR--SGKFNGYAPSVGALAAREAVAEYLSS   88 (403)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeEEeCCCCCCccCCC-CCCHHHHHHHHHHHh--cCCCCCCCCCCCCHHHHHHHHHHHHh
Confidence            345677777777643  468999999998621 122 334455554444453  22345798899999999999999965


Q ss_pred             CCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHH
Q 015435           91 ADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLE  170 (407)
Q Consensus        91 ~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  170 (407)
                      ..+..+++++|++  |+|+|+++.+++..+  +.+||+|++++|+|..+...++..|.+++.+++..+.++++|++++++
T Consensus        89 ~~~~~~~~~~ii~--t~G~t~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~  164 (403)
T TIGR01265        89 DLPGKLTADDVVL--TSGCSQAIEICIEAL--ANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEA  164 (403)
T ss_pred             hcCCCCCHHHEEE--ecChHHHHHHHHHHh--CCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHH
Confidence            4455667799999  999999999995433  679999999999999999999999999999988434457899999999


Q ss_pred             HHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEe
Q 015435          171 DLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQS  250 (407)
Q Consensus       171 ~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  250 (407)
                      .+.  ++++++++ ++||||||.+++.+++++|+++|+++|+++|+|++|.++.+++.  ...++..+ ....++++++|
T Consensus       165 ~~~--~~~~~v~i-~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~S  238 (403)
T TIGR01265       165 LAD--EKTVAIVV-INPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDA--PFIPMASF-ASIVPVLSLGG  238 (403)
T ss_pred             HhC--cCccEEEE-ecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC--Cccchhhh-ccCCcEEEEee
Confidence            886  56777776 89999999999999999999999999999999999999987642  22233333 22346999999


Q ss_pred             cCccccccCCCcceeEEeecCh-h-hHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435          251 YAKNMGLYGERVGALSIVCKTE-D-VASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       251 ~sK~~~~~G~r~G~~~~v~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  328 (407)
                      |||.|++||+|+||+  +++++ + +...+...+..... ...+++.+.|.++..++++..     ..++++.+++++++
T Consensus       239 ~SK~~~~pGlRiG~~--v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~  310 (403)
T TIGR01265       239 ISKRWVVPGWRLGWI--IIHDPHGIFRDTVLQGLKNLLQ-RILGPATIVQGALPDILENTP-----QEFFDGKISVLKSN  310 (403)
T ss_pred             cccccCCCcceEEEE--EEeCchhhhHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHhCh-----HHHHHHHHHHHHHH
Confidence            999999999999999  56543 2 22224444444432 234678889999998886521     25677888999999


Q ss_pred             HHHHHHHHHhcCCCCCcccccCCceeEEecCCC---------H-HHHHHhHhhccEEEcCCC--------eEEecCCCCC
Q 015435          329 RQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN---------S-EQVAFMTKEYHIYMTSDG--------RISMAGLSSK  390 (407)
Q Consensus       329 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e  390 (407)
                      ++++.+.|+..+.   +.+..|.+|+|.|+.++         . +++..+++++||.+.||.        ||+++. +++
T Consensus       311 ~~~l~~~L~~~~~---~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~-~~~  386 (403)
T TIGR01265       311 AELCYEELKDIPG---LVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITV-PES  386 (403)
T ss_pred             HHHHHHHHhcCCC---ceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecC-CHH
Confidence            9999999987632   66667889999998662         2 345677788999999973        999996 778


Q ss_pred             ChhHHHHHHHHHHHhh
Q 015435          391 TVPHLTDAIHAAVTRM  406 (407)
Q Consensus       391 ~i~~~~~~l~~~l~~~  406 (407)
                      .+++++++|+++++++
T Consensus       387 ~l~~~l~~l~~~~~~~  402 (403)
T TIGR01265       387 MLEEACSRIKEFCERH  402 (403)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8999999999998764

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK08361 aspartate aminotransferase; Provisional

Probab=100.00  E-value=9.5e-44  Score=339.16  Aligned_cols=365  Identities=14%  Similarity=0.153  Sum_probs=277.7

Q ss_pred             cccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK   86 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~   86 (407)
                      ..|+.......+..+.....  ..+++|||+.|.+   .. +.+..+.+.+.+.+.   ....+|.+..|.+++|+++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~---~~-~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~   81 (391)
T PRK08361         11 AGRINLIQRSKIRELFERAS--KMENVISLGIGEP---DF-DTPKNIKEAAKRALD---EGWTHYTPNAGIPELREAIAE   81 (391)
T ss_pred             hHHHHhCCccHHHHHHHHHH--hhcCeEEcCCCCC---CC-CCCHHHHHHHHHHHh---cCCCCCCCCCCcHHHHHHHHH
Confidence            34555545444444433322  2257899999985   33 334444444444443   234569888999999999999


Q ss_pred             HHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChh
Q 015435           87 LILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQ  166 (407)
Q Consensus        87 ~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  166 (407)
                      ++....+..+++++|++  |+|+++++.+++  ...+.+||+|++++|+|..+...++..|.+++.++++.+.++.+|++
T Consensus        82 ~~~~~~g~~~~~~~i~~--t~G~~~al~~~~--~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  157 (391)
T PRK08361         82 YYKKFYGVDVDVDNVIV--TAGAYEATYLAF--ESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPD  157 (391)
T ss_pred             HHHHHhCCCCCcccEEE--eCChHHHHHHHH--HHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHH
Confidence            99544455577899999  999999999885  34478999999999999999999999999999999854445789999


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      ++++.+.  ++++++++ ++|+||||.+++.+++++|+++|+++++++|+||+|.++.+++.  ...++..+  ..++++
T Consensus       158 ~l~~~i~--~~~~~v~i-~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~--~~~~~i  230 (391)
T PRK08361        158 ELLELIT--KRTRMIVI-NYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA--KHYPMIKY--APDNTI  230 (391)
T ss_pred             HHHHhcc--cccEEEEE-eCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCC--CCCCHhhc--CCCCEE
Confidence            9999887  45677766 89999999999999999999999999999999999999887532  11222211  236789


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                      +++||||.||++|+|+||+  +++ ++    +...+.........+++.+.|.++..++++...    .+++++.+++++
T Consensus       231 ~~~s~SK~~~~~GlRiG~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~  299 (391)
T PRK08361        231 LANSFSKTFAMTGWRLGFV--IAP-EQ----VIKDMIKLHAYIIGNVASFVQIAGIEALRSKES----WKAVEEMRKEYN  299 (391)
T ss_pred             EEecCchhcCCcHhhhhhh--ccC-HH----HHHHHHHHHhhhccCCChHHHHHHHHHhcCCcc----cHHHHHHHHHHH
Confidence            9999999999999999999  565 44    444444444333457788889999888887531    245788889999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CHH-HHHHhHhhccEEEcCCC----------eEEecCCCCC
Q 015435          327 SMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NSE-QVAFMTKEYHIYMTSDG----------RISMAGLSSK  390 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~l~~~gi~~~~gg----------Ris~~~~~~e  390 (407)
                      ++++.+.+.|++.+.   +.+..|.+|+|.|+.+     +.. +...+++++||.+.||.          ||+++. +++
T Consensus       300 ~~~~~~~~~L~~~~~---~~~~~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~  375 (391)
T PRK08361        300 ERRKLVLKRLKEMPH---IKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT-SKE  375 (391)
T ss_pred             HHHHHHHHHHHhCCC---CeecCCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC-CHH
Confidence            999999999988732   6778889999999744     333 44566677899998862          999996 778


Q ss_pred             ChhHHHHHHHHHHHhh
Q 015435          391 TVPHLTDAIHAAVTRM  406 (407)
Q Consensus       391 ~i~~~~~~l~~~l~~~  406 (407)
                      +++.++++|+++++++
T Consensus       376 ~l~~al~~l~~~l~~~  391 (391)
T PRK08361        376 KLIEAMERMEKALEEL  391 (391)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999988753

>PRK08363 alanine aminotransferase; Validated

Probab=100.00  E-value=2.8e-43  Score=336.72  Aligned_cols=350  Identities=14%  Similarity=0.119  Sum_probs=272.1

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+.++|+|+.|.|...+. +.++.+.+++.+.+.   .....|++..|.+++|+++++++...++..+++++|++  |+
T Consensus        27 ~~~~~~i~l~~g~p~~~~~-~p~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~i--t~  100 (398)
T PRK08363         27 KKGIKVIRLNIGDPVKFDF-QPPEHMKEAYCRAIK---EGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRV--TA  100 (398)
T ss_pred             hcCCCeEEEeCCCCCcCCC-CCCHHHHHHHHHHHH---cCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEE--eC
Confidence            3457999999998721122 334445444444443   12346888899999999999999665566778899999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA  187 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p  187 (407)
                      |+++++.++.  ...+.+||+|++++|+|..+...++..|.+++.++..+++++.+|++++++.+.  ++++++++ ++|
T Consensus       101 G~~~al~~~~--~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~--~~~~~v~l-~~p  175 (398)
T PRK08363        101 AVTEALQLIF--GALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKIT--EKTKAIAV-INP  175 (398)
T ss_pred             CHHHHHHHHH--HHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCC--cceEEEEE-ECC
Confidence            9999999985  344789999999999999999999999999988843245566789999999886  55677776 899


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEE
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSI  267 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  267 (407)
                      |||||.+++.+++++|+++|+++|+++|+||+|.++.+++.   ..++..+ ....++++++||||.|+++|+|+||+  
T Consensus       176 ~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~---~~~~~~~-~~~~~vi~~~SfSK~~~~~GlRiG~~--  249 (398)
T PRK08363        176 NNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK---HVSPGSL-TKDVPVIVMNGLSKVYFATGWRLGYI--  249 (398)
T ss_pred             CCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc---ccCHHHc-CcCCcEEEEecchhccCCccceEEEE--
Confidence            99999999999999999999999999999999999887542   2233222 23457999999999999999999999  


Q ss_pred             ee-cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 015435          268 VC-KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS  346 (407)
Q Consensus       268 v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  346 (407)
                      ++ .++++.+.+...+..... ...+++.+.|.++..++.+..      +++++.+++++++++++.+.|++.+.   +.
T Consensus       250 ~~~~~~~~~~~l~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~------~~l~~~~~~~~~~~~~l~~~L~~~~~---~~  319 (398)
T PRK08363        250 YFVDPEGKLAEVREAIDKLAR-IRLCPNTPAQFAAIAGLTGPM------DYLEEYMKKLKERRDYIYKRLNEIPG---IS  319 (398)
T ss_pred             EEeCcHHHHHHHHHHHHHHhc-ccccCChHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHhcCCC---CE
Confidence            55 345555555555443322 124678888999988887532      56778889999999999999988732   67


Q ss_pred             cccCCceeEEecCC-------CHHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          347 HIIKQIGMFTFTGL-------NSEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       347 ~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +..|.+|+|.|+.+       +.+++.++++++||.+.||.          ||+++. ++++++.++++|++++++
T Consensus       320 ~~~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~~~~  394 (398)
T PRK08363        320 TTKPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLP-PVEILEEAMDRFEEFMRE  394 (398)
T ss_pred             ecCCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence            77889999999643       23456778888999998862          999985 788899999999998864

>PRK05839 hypothetical protein; Provisional

Probab=100.00  E-value=2.5e-43  Score=333.76  Aligned_cols=348  Identities=14%  Similarity=0.114  Sum_probs=256.8

Q ss_pred             CCCchhhhh---HhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhC
Q 015435           14 PEDPILGVT---VAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILG   90 (407)
Q Consensus        14 ~~~~~~~~~---~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~   90 (407)
                      +++++++..   .+..+..+.++++|+.|.+   .. +.+ +.+.+++....   .....|+++.|.+++|+++++++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p---~~-~~~-~~~~~a~~~~~---~~~~~Y~~~~G~~~lr~aia~~l~~   75 (374)
T PRK05839          4 EPYPFEKLRELLKEITPNKEYKGLDLTIGEP---QF-ETP-KFIQDALKNNA---HLLNKYPKSAGEESLREAQRGFFKR   75 (374)
T ss_pred             CcchHHHHHHHHHHhhhcCCCCeEEcCCCCC---CC-CCC-HHHHHHHHHHh---hccCCCCCCCCCHHHHHHHHHHHHH
Confidence            334444443   3333434569999999986   22 334 33344433322   2356798899999999999999966


Q ss_pred             CCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHH
Q 015435           91 ADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLE  170 (407)
Q Consensus        91 ~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  170 (407)
                      .++..+++++|++  |+|+++++..+...+....+||.|+++.|+|..|...+...|++++.++++.+.++.+|+.+.+ 
T Consensus        76 ~~g~~~~~~~I~i--t~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~-  152 (374)
T PRK05839         76 RFKIELKENELIP--TFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE-  152 (374)
T ss_pred             HhCCCCCcceEEE--ecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh-
Confidence            5566678899999  9999999988743321114789999999999999999999999999999943334555554332 


Q ss_pred             HHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-----HcCCcE
Q 015435          171 DLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-----ADGGEC  245 (407)
Q Consensus       171 ~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-----~~~~~~  245 (407)
                       +   .+++++++ ++||||||.+++.+++++|+++|+++|++||+||+|.++.+++.   ..++....     ...+++
T Consensus       153 -~---~~~k~v~i-~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~---~~s~~~~~~~~~~~~~~~v  224 (374)
T PRK05839        153 -L---QEVDLVIL-NSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTP---PPSLLEASILVGNESFKNV  224 (374)
T ss_pred             -h---ccccEEEE-eCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCC---CCCHhhhhcccCccccCcE
Confidence             2   34677777 89999999999999999999999999999999999999865421   22221111     123689


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                      ++++||||.|+++|+|+||+  +++ ++    +.+.+.........+.+.+.|.++..++.+.       +++++.++++
T Consensus       225 i~~~SfSK~~~~~GlRiG~i--i~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~  290 (374)
T PRK05839        225 LVINSISKRSSAPGLRSGFI--AGD-AS----ILKKYKAYRTYLGCASPLPLQKAAAVAWLDD-------EHAEFFRNIY  290 (374)
T ss_pred             EEEeccccccCCccceeEEE--ecC-HH----HHHHHHHHHhhcCCCCChHHHHHHHHHhccc-------hHHHHHHHHH
Confidence            99999999999999999999  565 44    4444444443334467778888888777653       4567778888


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC--HHHHHHhHhhccEEEcCC----------C--eEEecCCCCCC
Q 015435          326 ISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN--SEQVAFMTKEYHIYMTSD----------G--RISMAGLSSKT  391 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~~~~g----------g--Ris~~~~~~e~  391 (407)
                      +++++.+.+.|   +    ..  .|.+|+|.|+++.  .+++.++++++||.+.||          +  ||+++. ++++
T Consensus       291 ~~~~~~~~~~l---~----~~--~p~gg~fi~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~-~~~~  360 (374)
T PRK05839        291 AKNLKLAREIL---G----IT--IPPATFYVWLPVDNDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY-DTPK  360 (374)
T ss_pred             HHHHHHHHHhc---C----CC--CCCeeEEEEEeCCChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC-CHHH
Confidence            88888887765   4    23  6789999999873  445667767799999985          1  999986 7899


Q ss_pred             hhHHHHHHHHHHH
Q 015435          392 VPHLTDAIHAAVT  404 (407)
Q Consensus       392 i~~~~~~l~~~l~  404 (407)
                      ++.++++|+++++
T Consensus       361 ~~~~l~~l~~~l~  373 (374)
T PRK05839        361 LEKALEIIKTYLE  373 (374)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999875

>PRK07777 aminotransferase; Validated

Probab=100.00  E-value=2.9e-43  Score=335.54  Aligned_cols=358  Identities=14%  Similarity=0.139  Sum_probs=272.6

Q ss_pred             cccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHH
Q 015435            9 KIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLI   88 (407)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~   88 (407)
                      ++...+...+..+.+.++   ..+++||+.|.|   +. +.|+...+++...+.  . ...+|.+..|.+++|+++++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~---~~~~i~l~~g~p---~~-~~~~~~~~~~~~~~~--~-~~~~Y~~~~g~~~lr~~ia~~~   74 (387)
T PRK07777          5 RLRPFGTTIFAEMSALAV---RTGAVNLGQGFP---DE-DGPPEMLEAAQEAIA--G-GVNQYPPGPGIPELRAAIAAQR   74 (387)
T ss_pred             hhhhcCccHHHHHHHHHh---hCCeEEccCCCC---CC-CCCHHHHHHHHHHHh--c-CCCCCCCCCCCHHHHHHHHHHH
Confidence            343444444444444432   358899999986   22 334455555555454  2 3467988899999999999988


Q ss_pred             hCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecC-CCCCcChh
Q 015435           89 LGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDP-ATRGLNFQ  166 (407)
Q Consensus        89 ~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~  166 (407)
                      ...++..++++ +|++  |+|+++++.+++  ...+.+||+|+++.|+|..+...++..|.+++.+++.+. .++.+|++
T Consensus        75 ~~~~g~~~~~~~~i~~--t~G~~~al~~~~--~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~  150 (387)
T PRK07777         75 RRRYGLEYDPDTEVLV--TVGATEAIAAAV--LGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLD  150 (387)
T ss_pred             HHHhCCCCCCCCcEEE--eCCcHHHHHHHH--HHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHH
Confidence            55445545555 7999  999999999884  445779999999999999999999999999999998533 24679999


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      ++++.+.  ++++++++ ++||||||.+++.+++++|+++|++|++++|+||+|.++.+.+.  ...++..+....++++
T Consensus       151 ~l~~~~~--~~~~~v~l-~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~~~~~~i  225 (387)
T PRK07777        151 ALRAAVT--PRTRALIV-NSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA--RHLPLATLPGMRERTV  225 (387)
T ss_pred             HHHHhcC--cccEEEEE-cCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC--CcccHhhCCCCcCcEE
Confidence            9999886  45677766 89999999999999999999999999999999999999987542  1223333322346799


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                      +++||||.||++|+|+||+  +++ +    .+.+.+.........+++.+.|.++..++...+      +++++.++.++
T Consensus       226 ~~~S~SK~~g~~GlRiG~~--~~~-~----~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~  292 (387)
T PRK07777        226 TISSAAKTFNVTGWKIGWA--CGP-A----PLIAAVRAAKQYLTYVGGAPFQPAVAHALDHED------AWVAALRDSLQ  292 (387)
T ss_pred             EEeechhhccCcCceeEEE--ecC-H----HHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCc------HHHHHHHHHHH
Confidence            9999999999999999999  555 3    344445444443344567777888888776543      45677889999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCceeEEecCC------CH-HHHHHhHhhccEEEcCCC-------------eEEecC
Q 015435          327 SMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL------NS-EQVAFMTKEYHIYMTSDG-------------RISMAG  386 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~l~~~gi~~~~gg-------------Ris~~~  386 (407)
                      ++++++.+.|++.+    +.+..+.+++|.|+.+      +. +++..+++++||.+.||.             ||+++.
T Consensus       293 ~~~~~l~~~L~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~  368 (387)
T PRK07777        293 AKRDRLAAGLAEAG----FEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK  368 (387)
T ss_pred             HHHHHHHHHHHhCC----CCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC
Confidence            99999999999876    7778888999999753      33 345667677899998751             999986


Q ss_pred             CCCCChhHHHHHHHHHH
Q 015435          387 LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l  403 (407)
                       +++++++++++|+++.
T Consensus       369 -~~~~l~~~l~~l~~~~  384 (387)
T PRK07777        369 -RDDTLDEAIRRLRALR  384 (387)
T ss_pred             -CHHHHHHHHHHHHHHh
Confidence             7899999999998764

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-43  Score=338.82  Aligned_cols=350  Identities=17%  Similarity=0.229  Sum_probs=290.0

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc-cc-cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ-SR-VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      .+.+++|+.|.+   +....|....++......... .. ...|.+..|.++||+.+++++....+..+++++|++  |+
T Consensus        88 ~~~~i~f~~g~p---~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~Iii--T~  162 (459)
T COG1167          88 DPSVIDFAGGLP---DPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVI--TS  162 (459)
T ss_pred             CCceecCCCCCC---CcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEE--eC
Confidence            389999999985   332456677776665554211 22 467888899999999999999657788888899999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA  187 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p  187 (407)
                      |+++|+.++.+++  +.+||+|++.+|+|.....+++..|.+++.+|++   ..|+|++++++.+... +.++++++++.
T Consensus       163 G~q~al~l~~~~l--~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d---~~G~~~e~le~~~~~~-~~k~~y~~P~~  236 (459)
T COG1167         163 GAQQALDLLLRLL--LDPGDTVLVEDPTYPGALQALEALGARVIPVPVD---EDGIDPEALEEALAQW-KPKAVYVTPTF  236 (459)
T ss_pred             CHHHHHHHHHHHh--CCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCC---CCCCCHHHHHHHHhhc-CCcEEEECCCC
Confidence            9999999996444  7799999999999999999999999999999993   4689999999999743 57888998999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEE
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSI  267 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  267 (407)
                      |||||.++|.+..++|+++|++||++||+||.|+++.+++.+.  .++.. .+..+++|+++||||.+. ||+|+||+  
T Consensus       237 qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~--~~l~~-ld~~~rViy~gSFSK~l~-PglRlG~v--  310 (459)
T COG1167         237 QNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPP--PPLKA-LDAPGRVIYLGSFSKTLA-PGLRLGYV--  310 (459)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCC--CChHh-hCCCCCEEEEeeehhhcc-cccceeee--
Confidence            9999999999999999999999999999999999999985422  23333 244689999999999997 99999999  


Q ss_pred             eecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435          268 VCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH  347 (407)
Q Consensus       268 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  347 (407)
                      +++     ..+.+.+.........+++.+.|.++...+.++    .|.++++++|+.++++++.+.+.|++... ....+
T Consensus       311 v~p-----~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G----~~~~hl~~lR~~y~~rr~~l~~~L~~~~~-~~~~~  380 (459)
T COG1167         311 VAP-----PELIEKLLRLKQAADLGPSSLSQAALAAFLLSG----HYDRHLRRLRREYARRRDALLEALAEYLP-ELATW  380 (459)
T ss_pred             eCC-----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCeee
Confidence            677     556666666666677799999999999988865    46688999999999999999999998752 12678


Q ss_pred             ccCCceeEEecCC----CHHHHHHhHhhccEEEcC-CC------------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          348 IIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTS-DG------------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       348 ~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~-gg------------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ..|.+|+|.|+.+    +...+.+.+.++|+.+.| |.            |++++..+++++++++.+|.+++++.
T Consensus       381 ~~p~gG~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~  456 (459)
T COG1167         381 TRPEGGLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREA  456 (459)
T ss_pred             ecCCceEEEEEEcCCCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8999999999966    444555555558999988 41            99999888899999999999998764

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=100.00  E-value=2.5e-43  Score=337.89  Aligned_cols=341  Identities=17%  Similarity=0.175  Sum_probs=255.9

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhcc--ccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND--QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ++++++|+.|.+   +. +.++.+.+++.+.+.+.  .....+|.+..|.++||+++++++...++..+++++|++  |+
T Consensus        33 ~~~~i~l~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~i--t~  106 (409)
T PRK07590         33 EAKIIRLGIGDV---TQ-PLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFI--SD  106 (409)
T ss_pred             CCceEEecCcCC---CC-CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEE--CC
Confidence            568999999985   33 33444555555544310  124567999999999999999998766777788999999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCce-----------eeEEEeecCCCCCcChhhHHHHHHcCC
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLS-----------VKTYRYYDPATRGLNFQGLLEDLRAAP  176 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~-----------~~~v~~~~~~~~~~d~~~l~~~i~~~~  176 (407)
                      |+++++.++   ...+.+||+|++++|+|+.+...++..|.+           ++.++++.+.++.+|+++        +
T Consensus       107 Ga~~al~~l---~~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~--------~  175 (409)
T PRK07590        107 GAKCDTGNI---LDIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE--------E  175 (409)
T ss_pred             CHHHHHHHH---HHhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcc--------c
Confidence            999999886   344679999999999999999999999987           888988422233333321        3


Q ss_pred             CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccc
Q 015435          177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMG  256 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~  256 (407)
                      +++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++|+++||||.|+
T Consensus       176 ~~k~i~l-~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~--~~~~~~~~~~~~~~vi~~~SfSK~~~  252 (409)
T PRK07590        176 KVDIIYL-CFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPS--LPHSIYEIEGARECAIEFRSFSKTAG  252 (409)
T ss_pred             CceEEEE-eCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCC--CCcchhhCCCcccceEEEecCccccC
Confidence            5677777 79999999999999999999999999999999999999987542  12233333222357899999999999


Q ss_pred             ccCCCcceeEEeecChhhHHHH--------HHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435          257 LYGERVGALSIVCKTEDVASRV--------ESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       257 ~~G~r~G~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  328 (407)
                      ++|+|+||+  +++ +++.+.+        .............+++.+.|.++..++.+..     .+++++.++.++++
T Consensus       253 ~pGlRiG~~--i~~-~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~-----~~~~~~~~~~~~~~  324 (409)
T PRK07590        253 FTGTRCAYT--VVP-KELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG-----KAQIKELIDYYMEN  324 (409)
T ss_pred             CcCceeEEE--EcC-HHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHH
Confidence            999999999  565 3333311        0011111122223578889999888886532     15677888999999


Q ss_pred             HHHHHHHHHhcCCCCCcccccCCceeEEecCC----CH-HHHHHhHhhccEEEcCCC----------eEEecCCCCCChh
Q 015435          329 RQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----NS-EQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVP  393 (407)
Q Consensus       329 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~  393 (407)
                      ++.+.+.|++.+    +.+..+.+++|.|+.+    +. ++...+++++||.+.||.          ||++.. ++++++
T Consensus       325 r~~l~~~L~~~~----~~~~~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~  399 (409)
T PRK07590        325 AKIIREGLESAG----FEVYGGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFG-SRENVL  399 (409)
T ss_pred             HHHHHHHHHhcC----CceecCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccC-CHHHHH
Confidence            999999999886    6777788999999966    33 345677778899999862          899764 789999


Q ss_pred             HHHHHHHHHH
Q 015435          394 HLTDAIHAAV  403 (407)
Q Consensus       394 ~~~~~l~~~l  403 (407)
                      .++++|++++
T Consensus       400 ~~l~rl~~~~  409 (409)
T PRK07590        400 EAMERIKKAL  409 (409)
T ss_pred             HHHHHHHhhC
Confidence            9999998753

>PLN02368 alanine transaminase

Probab=100.00  E-value=2.8e-43  Score=333.68  Aligned_cols=346  Identities=14%  Similarity=0.147  Sum_probs=256.2

Q ss_pred             cccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecC-----CC---------------cc-----ccchhHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTE-----EG---------------KP-----LVLNVVRKA   57 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~-----~~---------------~~-----~~~~~~~~~   57 (407)
                      ++.+|+.+.+...+........  .+.+.++|+|++|.|.-.     +.               .|     .|++.+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a   89 (407)
T PLN02368         10 SLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARA   89 (407)
T ss_pred             hcCHHHHhhhhhcCCHHHHHHHHHHHHhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHH
Confidence            3456666666555554433222  335679999999997100     01               01     255666666


Q ss_pred             HHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh-cCCCeEEecCCCC
Q 015435           58 EQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH-YHQLTIYIPQPTW  136 (407)
Q Consensus        58 ~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~-~~gd~Vi~~~p~y  136 (407)
                      ...+........+|++..|.++||+++++++...++..+++++|++  |+|+++++.+++  ...+ .+||+|++++|+|
T Consensus        90 ~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~i--t~Ga~~al~~~~--~~l~~~pGd~Vli~~P~Y  165 (407)
T PLN02368         90 KHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQIL--NAVIRGEKDGVLVPVPQY  165 (407)
T ss_pred             HHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--cccHHHHHHHHH--HHHcCCCCCEEEEeCCCC
Confidence            6655312234567999999999999999999665566678899999  999999999884  3335 5899999999999


Q ss_pred             CChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC----CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 015435          137 GNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA----PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGL  212 (407)
Q Consensus       137 ~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~----~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~  212 (407)
                      +.|...++..|.+++.+++..++++++|++++++.+++.    .+++++++ ++||||||.+++.+++++|+++|++||+
T Consensus       166 ~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l-~nP~NPTG~v~s~e~l~~l~~~a~~~~~  244 (407)
T PLN02368        166 PLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVI-INPGNPTGQCLSEANLREILKFCYQERL  244 (407)
T ss_pred             ccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEE-ECCCCCCCccCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999865556899999999998631    14566655 8999999999999999999999999999


Q ss_pred             eeeeccccccccCCCCCchhHHHHHHH-H------cCCcEEEEEecCccc-cccCCCcceeEEee--cChhhHHHHHHHH
Q 015435          213 LPFFDSAYQGFASGSLDADAQSVRMFV-A------DGGECLVAQSYAKNM-GLYGERVGALSIVC--KTEDVASRVESQL  282 (407)
Q Consensus       213 ~li~D~~y~~~~~~~~~~~~~~~~~~~-~------~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~--~~~~~~~~~~~~~  282 (407)
                      +||+||+|.++.+++.. ...++..+. .      ..+++|+++||||.| +++|+|+||+  ++  .++++    .+.+
T Consensus       245 ~II~DE~Y~~l~y~~~~-~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~--i~~~~~~~l----i~~~  317 (407)
T PLN02368        245 VLLGDEVYQQNIYQDER-PFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYF--EMTNIPPKT----VEEI  317 (407)
T ss_pred             EEEEEccccccccCCCC-CcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEE--EEeCCCHHH----HHHH
Confidence            99999999999986421 122332221 1      134899999999998 8999999999  54  34444    4444


Q ss_pred             hhhhhcccCCCChhHHHHHHHHhcChh----hHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec
Q 015435          283 KLVIRPMYSSPPIHGASIVATILKDST----MYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT  358 (407)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  358 (407)
                      ..... ..++++.++|.++..++.+.+    ..+.|.+..+++++.++++++++.+.|++++.   +.+..|+|+||.|.
T Consensus       318 ~~~~~-~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g---~~~~~P~Gafy~~~  393 (407)
T PLN02368        318 YKVAS-IALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKN---VVCNFTEGAMYSFP  393 (407)
T ss_pred             HHHhc-ccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---eEeCCCCeeeEecc
Confidence            44322 345788899999999997542    11224444566789999999999999999742   78889999999997


Q ss_pred             CC--CHHHHH
Q 015435          359 GL--NSEQVA  366 (407)
Q Consensus       359 ~~--~~~~~~  366 (407)
                      ++  ..+.+.
T Consensus       394 ~i~lp~~~~~  403 (407)
T PLN02368        394 QIKLPPKAIE  403 (407)
T ss_pred             CCCCCHHHHH
Confidence            54  444443

>PRK09275 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.4e-43  Score=339.06  Aligned_cols=339  Identities=15%  Similarity=0.134  Sum_probs=256.1

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCC-CCC-CC--CCceEEeecC
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGAD-SPA-IK--DNRVTTVQCL  107 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~-~~~-~~--~~~i~~~~t~  107 (407)
                      ++|+++.|.|   +. +.|.. +.++...+.  .   .+|+++.|.+++|+++++++.... +.. ..  +++|++  |+
T Consensus       101 ~~i~l~~g~p---~~-~~~~~-v~e~~~~~~--~---~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~v--T~  168 (527)
T PRK09275        101 DAVSYVRDQL---GF-DADEF-VYELVDGII--G---DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFA--VE  168 (527)
T ss_pred             HHHhhcCCCC---CC-CCCHH-HHHHHHHHh--c---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEE--eC
Confidence            5799999986   44 44444 444656654  2   259999999999999999664432 111 12  348999  99


Q ss_pred             CcccHHHHHHHHH---HhhcCCCeEEecCCCCCChHHHHhhcCcee--eEEEeecCCCCCcChhhHHHHHHcCCCCcEEE
Q 015435          108 SGTGSLRVGAEFL---ARHYHQLTIYIPQPTWGNHPKVFTLAGLSV--KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL  182 (407)
Q Consensus       108 g~t~a~~~~~~~~---~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~--~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~  182 (407)
                      |+++++..++..+   ..+.+||+|++++|+|+.|...++..|..+  +.++...+.++.+|+++++++++  +++++++
T Consensus       169 Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~--~~tkai~  246 (527)
T PRK09275        169 GGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRD--PSIKALF  246 (527)
T ss_pred             CHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcC--CCCCEEE
Confidence            9999999985432   247899999999999999999988776555  44544334457899999999876  6788888


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHH--cCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRS--KGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE  260 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  260 (407)
                      + ++||||||.+++.+++++|+++|++  ++++||+||+|..|.+.     ..++..  ...+++|++.||||.|+++||
T Consensus       247 l-~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-----~~s~~~--~~~~~~I~v~SfSK~f~mtG~  318 (527)
T PRK09275        247 L-VNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD-----FRSLFA--VLPYNTILVYSFSKYFGATGW  318 (527)
T ss_pred             E-eCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc-----ccCHHH--hCCCCEEEEeehhhhccCcHh
Confidence            7 7999999999999999999999965  59999999999998752     122221  134689999999999999999


Q ss_pred             CcceeEEeecChhhHHHHHHHH--------------------------------hhhhhcccCCCChhHHHH-----HHH
Q 015435          261 RVGALSIVCKTEDVASRVESQL--------------------------------KLVIRPMYSSPPIHGASI-----VAT  303 (407)
Q Consensus       261 r~G~~~~v~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~-----~~~  303 (407)
                      |+||+  +++++.+.+++++.+                                +.+....+.+.+++.|.+     +.+
T Consensus       319 RlG~i--~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~a  396 (527)
T PRK09275        319 RLGVI--ALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFA  396 (527)
T ss_pred             HHhhh--hcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence            99999  576554444333322                                455555666788888876     233


Q ss_pred             HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC---------------------H
Q 015435          304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN---------------------S  362 (407)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~  362 (407)
                      +++..+      .+.++.++.++++++.+.+.|. .+    +...+|.|+||+|+++.                     .
T Consensus       397 ll~~~~------~~~~~~~~~~~~Rr~~l~~~Lg-~~----~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~  465 (527)
T PRK09275        397 LLDEED------AYKKAMKDIIRRRYKALYEGLG-LP----EPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPV  465 (527)
T ss_pred             HHhCch------HHHHHHHHHHHHHHHHHHHHcC-CC----CcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHH
Confidence            455433      5677888999999999988872 22    34457899999998552                     2


Q ss_pred             HHHHHhHhhccEEEcCCC---------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          363 EQVAFMTKEYHIYMTSDG---------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       363 ~~~~~~l~~~gi~~~~gg---------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +++.++++++||.+.||.         |||++.++++++..+.++|++++++
T Consensus       466 ~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~~l~~  517 (527)
T PRK09275        466 DLLFRLAEETGVVLLPGGGFGGPEWSVRVSLANLNEEDYAKIGKAIRKLLDE  517 (527)
T ss_pred             HHHHHHHhcCCEEEeCchhhCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            456789999999999983         9999976889999999999999865

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=100.00  E-value=4.9e-43  Score=338.17  Aligned_cols=333  Identities=17%  Similarity=0.173  Sum_probs=260.4

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      ..+++|+.|.|   +. +.++. +.+.+....   .....|++..|.+++|+.+++++.....   .+++|++  |+|++
T Consensus        85 ~~~i~L~~g~p---~~-~~~p~-~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iii--t~G~~  151 (431)
T PRK15481         85 TPLHDLAGGNP---DP-QRLPD-LSRYFARLS---RTPRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDL--TSGAI  151 (431)
T ss_pred             chhhhhhcCCC---Ch-hHhHH-HHHHHHHhh---hhhhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEE--ecCcH
Confidence            46789998875   33 22223 333333332   1245698899999999999999832211   2469999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP  190 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP  190 (407)
                      +++.+++  ...+.+||.|++++|+|..+...++..|++++.+|++ +  .++|++++++++.  +++++++++++||||
T Consensus       152 ~al~~~~--~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~--~g~~~~~l~~~~~--~~~k~i~~~p~p~NP  224 (431)
T PRK15481        152 DAIERLL--CAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVD-A--EGMQPEKLERALA--QGARAVILTPRAHNP  224 (431)
T ss_pred             HHHHHHH--HHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccC-C--CCCCHHHHHHHHh--cCCCEEEECCCCCCC
Confidence            9999984  4447899999999999999999999999999999983 3  3589999999887  456777776699999


Q ss_pred             CCCCCCHHHHHHHHHHHHHc-CceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          191 TGVDPTLEQWEQIRQLMRSK-GLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       191 tG~~~~~~~l~~i~~~~~~~-~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      ||.+++.+++++|+++|++| +++||+||+|.++.+.+.    .+.  +....+++++++||||.|+ +|+|+||+  ++
T Consensus       225 TG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~----~~~--~~~~~~~vi~~~SfSK~~~-~GlRiG~~--i~  295 (431)
T PRK15481        225 TGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY----HSV--IPQTTQRWALIRSVSKALG-PDLRLAFV--AS  295 (431)
T ss_pred             CCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC----CCC--CcCCCCCEEEEeeeccccC-CCceeEEE--eC
Confidence            99999999999999999999 999999999999976421    111  1113468999999999999 99999999  45


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      + +++    ...+.........+++.+.|.++..++++..    |.+++++.++.++++++.+.+.|++.+    +.+..
T Consensus       296 ~-~~~----~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~----~~~~l~~~~~~~~~~r~~~~~~L~~~~----~~~~~  362 (431)
T PRK15481        296 D-SAT----SARLRLRLNSGTQWVSHLLQDLVYACLTDPE----YQARLAQARLFYAQRRQKLARALQQYG----IAIPS  362 (431)
T ss_pred             C-HHH----HHHHHHHHhccccCCCHHHHHHHHHHHhCcc----HHHHHHHHHHHHHHHHHHHHHHHHHcC----Ccccc
Confidence            5 444    4444333333334678899999999998763    446688899999999999999999886    67778


Q ss_pred             CCceeEEecCCC--HHHHHHhHhhccEEEcCCC-----------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          350 KQIGMFTFTGLN--SEQVAFMTKEYHIYMTSDG-----------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       350 ~~~~~~~~~~~~--~~~~~~~l~~~gi~~~~gg-----------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      |.+|+|.|+.+.  .+.+...|.++||.+.||.           ||+++..+++++++++++|++++.+
T Consensus       363 p~gg~f~~~~l~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~~  431 (431)
T PRK15481        363 PGDGLNLWLPLDTDSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALNR  431 (431)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence            899999999773  3444444556899998851           9999987889999999999998753

>PRK07568 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-42  Score=331.70  Aligned_cols=365  Identities=16%  Similarity=0.199  Sum_probs=276.1

Q ss_pred             ccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      +.+++.....+.+.+..+...  ...+.++++|+.|.+   .. +.+..+ .+++....   ....+|.+..|.+++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~---~~-~~~~~~-~~a~~~~~---~~~~~Y~~~~g~~~lr~~   74 (397)
T PRK07568          3 ISKRVLNMPASPIRKLVPYADEAKKRGIKVYHLNIGQP---DI-KTPEVF-FEAIKNYD---EEVLAYSHSQGIPELREA   74 (397)
T ss_pred             hhhHhhhCCcchHHHHHHHHHHHHhhCCCEEEecCCCC---CC-CCCHHH-HHHHHHHh---cCCcCcCCCCCCHHHHHH
Confidence            344555555556666554332  123457999999985   22 334334 33333332   235679889999999999


Q ss_pred             HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC-
Q 015435           84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG-  162 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~-  162 (407)
                      +++++. ..+..+++++|++  |+|+++++.+++.  ..+.+||+|++++|+|..+...++..|.+++.++++.+.++. 
T Consensus        75 ia~~~~-~~~~~~~~~~i~~--t~G~~~al~~~~~--~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~  149 (397)
T PRK07568         75 FAKYYK-KWGIDVEPDEILI--TNGGSEAILFAMM--AICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHL  149 (397)
T ss_pred             HHHHHH-HhCCCCCcceEEE--cCChHHHHHHHHH--HhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCC
Confidence            999995 4566677899999  9999999999853  347799999999999999999999999999999984233333 


Q ss_pred             cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      .+++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|+++|+++|+|++|.++.+++.  ...++..+....
T Consensus       150 ~~~~~l~~~~~--~~~~~v~i-~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~--~~~s~~~~~~~~  224 (397)
T PRK07568        150 PSKEEIEKLIT--PKTKAILI-SNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGL--KYTSALSLEGLE  224 (397)
T ss_pred             CCHHHHHHhcC--ccceEEEE-ECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCC--CccChhhcCCCc
Confidence            35788988886  55677666 89999999999999999999999999999999999999987642  223333332235


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      +++++++||||.|+++|+|+||+  +++++++.+.+..    .... ..+++.+.|.++..++++.+      .++++++
T Consensus       225 ~~~i~~~S~SK~~~~~G~R~G~~--~~~~~~~~~~~~~----~~~~-~~~~s~~~q~~~~~~l~~~~------~~~~~~~  291 (397)
T PRK07568        225 DRVIIIDSVSKRYSACGARIGCL--ISKNKELIAAAMK----LCQA-RLSPPTLEQIGAAALLDTPE------SYFDEVR  291 (397)
T ss_pred             CCEEEEecchhhccCCCcceEEE--ecCCHHHHHHHHH----Hhhc-cCCCCcHHHHHHHHHhhCCH------HHHHHHH
Confidence            78999999999999999999999  6766665554433    2222 34778889999999987643      5677888


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC---H-HHHHHhHhh-----ccEEEcCC---------C----
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN---S-EQVAFMTKE-----YHIYMTSD---------G----  380 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~-----~gi~~~~g---------g----  380 (407)
                      +.++++++.+.+.|++.+.   +.+..|.+|+|.|+.+.   . ++...++++     +||.+.||         +    
T Consensus       292 ~~~~~~~~~l~~~L~~~~~---~~~~~p~g~~~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~i  368 (397)
T PRK07568        292 EEYKKRRDILYEELNKIPG---VVCEKPKGAFYIIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEI  368 (397)
T ss_pred             HHHHHHHHHHHHHHhcCCC---ceecCCCcceEEEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeE
Confidence            9999999999999988742   66778899999998762   3 345556554     68999874         1    


Q ss_pred             eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          381 RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       381 Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ||+++. ++++++.++++|++++++
T Consensus       369 Rls~~~-~~~~~~~~~~~l~~~l~~  392 (397)
T PRK07568        369 RIAYVL-NEEDLKRAMEILKEALEK  392 (397)
T ss_pred             EEEEeC-CHHHHHHHHHHHHHHHHH
Confidence            999985 789999999999998875

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.9e-42  Score=325.36  Aligned_cols=331  Identities=13%  Similarity=0.135  Sum_probs=255.0

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCC-ceEEeecCCcc
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDN-RVTTVQCLSGT  110 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t~g~t  110 (407)
                      .++||+.|.|   +. +.++...+++.+...    ....|+++.|.+++|+++++++...++..++++ +|++  |+|++
T Consensus         1 ~~~~~~~g~p---~~-~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iii--t~Gs~   70 (350)
T TIGR03537         1 RLFDFGTGDP---KE-PTPPFIRKALIDAVP----EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLP--SAGSK   70 (350)
T ss_pred             CeEeccCCCC---CC-CCCHHHHHHHHHHHh----ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--cCChH
Confidence            3688999975   32 334444444443332    356798889999999999999965556667777 9999  99999


Q ss_pred             cHHHHHHHHHHhhcCC---CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435          111 GSLRVGAEFLARHYHQ---LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA  187 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~g---d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p  187 (407)
                      +++..+.  ...+.+|   |+|+++.|+|+.+...++..|++++.++++.+.++.+|++++++++.  ++++++++ ++|
T Consensus        71 ~ai~~~~--~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--~~~~~i~i-~~p  145 (350)
T TIGR03537        71 EAIFHFP--LVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSIL--EETKIVWI-NYP  145 (350)
T ss_pred             HHHHHHH--HHHcCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhh--hccEEEEE-eCC
Confidence            9999984  4446666   69999999999999999999999999998534456789999999887  45677776 789


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEE
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSI  267 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  267 (407)
                      |||||.+++.+++++|+++|++||+++|+||+|.++.+++.   ..+...+  ..+++++++||||.+|++|+|+||+  
T Consensus       146 ~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~~--~~~~~i~~~s~SK~~g~~GlRiG~~--  218 (350)
T TIGR03537       146 HNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP---PHSALEV--GIENVLAFHSLSKRSGMTGYRSGFV--  218 (350)
T ss_pred             CCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC---CCchhhc--CcCCEEEEeecccccCCccccceee--
Confidence            99999999999999999999999999999999998876531   2222221  2468999999999999999999999  


Q ss_pred             eecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435          268 VCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH  347 (407)
Q Consensus       268 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  347 (407)
                      +++ ++    +...+.........+++...|.++...+.+.       .++++.+++++++++.+.+.|+..+    +.+
T Consensus       219 ~~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~r~~l~~~~~~~~~~l~~~g----~~~  282 (350)
T TIGR03537       219 AGD-EK----LISFLRKLRANFGVASPDFVQAAAKAAWSDD-------NHVLERRKIFKRKRDLFIEFFNKVG----LEY  282 (350)
T ss_pred             ecC-HH----HHHHHHHHHHhhccCCCHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHHHHHHHHHHCC----Ccc
Confidence            454 44    4444444444444466667778777777643       4466778899999999999999887    677


Q ss_pred             ccCCceeEEecCC----CHHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHH
Q 015435          348 IIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHA  401 (407)
Q Consensus       348 ~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~  401 (407)
                      ..+.+|+|.|+.+    +...+.+.|.++||.+.||.          ||+++. +++++++++++|++
T Consensus       283 ~~~~g~~~~~~~~~~~~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~~-~~~~~~~~l~~~~~  349 (350)
T TIGR03537       283 LYPDATFYLWVKVPSGIDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALVP-TLEECEEALRLWER  349 (350)
T ss_pred             cCCCeEEEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHhc
Confidence            7888999998855    33444444445899998852          999874 77889999988875

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=100.00  E-value=2.9e-42  Score=331.06  Aligned_cols=339  Identities=14%  Similarity=0.131  Sum_probs=252.0

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCC-CCC-CCCC--ceEEeecC
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGAD-SPA-IKDN--RVTTVQCL  107 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~-~~~-~~~~--~i~~~~t~  107 (407)
                      +.|++++|.|   +. + +++.+.++...+.  .   .+|+++.|..++++++++.+.... +.. ..++  +|++  |+
T Consensus        95 ~~i~l~~g~p---~~-~-~~~~~~~~~~~~~--~---~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~i--t~  162 (521)
T TIGR03801        95 DIISYVIDQL---GF-D-PDAFLYEMCDGII--G---DNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFA--VE  162 (521)
T ss_pred             HHHhhcCCCC---CC-C-CCHHHHHHHHHhh--c---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEE--eC
Confidence            5799999986   33 4 5577777776654  1   258777888888888885443322 221 2233  8999  99


Q ss_pred             CcccHHHHHHHHHH---hhcCCCeEEecCCCCCChHHHHhhc--CceeeEEEeecCCC-----CCcChhhHHHHHHcCCC
Q 015435          108 SGTGSLRVGAEFLA---RHYHQLTIYIPQPTWGNHPKVFTLA--GLSVKTYRYYDPAT-----RGLNFQGLLEDLRAAPS  177 (407)
Q Consensus       108 g~t~a~~~~~~~~~---~~~~gd~Vi~~~p~y~~~~~~~~~~--G~~~~~v~~~~~~~-----~~~d~~~l~~~i~~~~~  177 (407)
                      |+++++..++..+.   .+.+||+|++++|+|+.|...++..  |.+++.++...+..     +.+|++++++++.  ++
T Consensus       163 Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~--~~  240 (521)
T TIGR03801       163 GGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD--PS  240 (521)
T ss_pred             CHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcC--CC
Confidence            99999999854321   4779999999999999999998765  67777777642222     7789999998776  67


Q ss_pred             CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc--CceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          178 GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK--GLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       178 ~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      ++++++ ++||||||.+++.+++++|+++|++|  +++||+||+|..|.+.     ..++..  ...+++++++||||.|
T Consensus       241 ~kai~l-~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-----~~sl~~--~~~~~vI~v~SfSK~f  312 (521)
T TIGR03801       241 IKALFV-VNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD-----FRSLFA--ELPYNTIGVYSFSKYF  312 (521)
T ss_pred             CcEEEE-eCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc-----ccchhh--hCCCCEEEEEcchhhc
Confidence            788887 79999999999999999999999987  8999999999988752     223222  2346899999999999


Q ss_pred             cccCCCcceeEEeecChhhHHHHH--------------------------------HHHhhhhhcccCCCChhHHH--H-
Q 015435          256 GLYGERVGALSIVCKTEDVASRVE--------------------------------SQLKLVIRPMYSSPPIHGAS--I-  300 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~--~-  300 (407)
                      +++|||+||+  +++++.+.++++                                ...+......+.+.+++.|.  + 
T Consensus       313 g~~G~RlG~i--~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al  390 (521)
T TIGR03801       313 GATGWRLGTI--ALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMAL  390 (521)
T ss_pred             cCchhhhhhh--hcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHH
Confidence            9999999999  566543333332                                22233444444556666565  3 


Q ss_pred             --HHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC-----------------
Q 015435          301 --VATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN-----------------  361 (407)
Q Consensus       301 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  361 (407)
                        +..+++..+      .+.++.++.++++++.+.+.|   |.+  +...++.++||+|+++.                 
T Consensus       391 ~a~~all~~~~------~y~~~~~~~~~~R~~~l~~~L---g~~--~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~  459 (521)
T TIGR03801       391 FSLFALMDKEN------AYKAETKDICRRREKLLFRGL---GLP--LQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKK  459 (521)
T ss_pred             HHHHHHhccch------hHHHHHHHHHHHHHHHHHHhc---CCC--CcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhc
Confidence              344455432      567788899999999999988   311  34457889999998653                 


Q ss_pred             ----HHHHHHhHhhccEEEcCCC---------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          362 ----SEQVAFMTKEYHIYMTSDG---------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       362 ----~~~~~~~l~~~gi~~~~gg---------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                          .+++.++++++||.+.||.         |||++.+++++++++.++|++++++
T Consensus       460 ~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~  516 (521)
T TIGR03801       460 NYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDE  516 (521)
T ss_pred             cCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence                2456789999999999983         9999877889999999999999865

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=100.00  E-value=5.9e-42  Score=323.86  Aligned_cols=345  Identities=15%  Similarity=0.146  Sum_probs=257.2

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      |.+|+...+..++........ ..+...++|+.|.|   .. +.++...+. +....    ...+|++..|.+++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~p---~~-~~~~~~~~~-~~~~~----~~~~Y~~~~G~~~lr~~ia   72 (364)
T PRK07865          3 VSARLPDFPWDTLAPAKATAA-AHPDGIVDLSVGTP---VD-PVPPVIQEA-LAAAA----DAPGYPTTAGTPELREAIV   72 (364)
T ss_pred             ccccCCCccHHHHHHHHHHHH-hcCCCEEEcCCCCC---CC-CCCHHHHHH-HHHHH----hhCCCCCccCCHHHHHHHH
Confidence            556666666555555443332 24467999999975   33 434333333 33332    1347988899999999999


Q ss_pred             HHHhCCCCCC-CCCCceEEeecCCcccHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           86 KLILGADSPA-IKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        86 ~~~~~~~~~~-~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      +++...++.. +++++|++  |+|+++++.++.  ... +.+||.|++++|+|+.+...++..|++++.++.        
T Consensus        73 ~~l~~~~~~~~~~~~~I~i--t~G~~~~i~~~~--~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~--------  140 (364)
T PRK07865         73 GWLARRRGVTGLDPAAVLP--VIGSKELVAWLP--TLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS--------  140 (364)
T ss_pred             HHHHHHcCCCCCCcccEEE--ccChHHHHHHHH--HHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC--------
Confidence            9996655554 77899999  999999999874  233 479999999999999999999999999888742        


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH--HHc
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF--VAD  241 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~--~~~  241 (407)
                       ++++.+     .+++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ....+...  ...
T Consensus       141 -~~~l~~-----~~~~~v~~-~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~  211 (364)
T PRK07865        141 -LTELGP-----QRPALIWL-NSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAE--PVSILDPRVCGGD  211 (364)
T ss_pred             -hhhCCc-----ccceEEEE-cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCC--CCccccccccCCc
Confidence             122221     34567777 79999999999999999999999999999999999999887542  11111100  112


Q ss_pred             CCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          242 GGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       242 ~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      .+++++++||||.|+++|+|+||+  +++ ++    +...+.........+++.+.|.++..++.+.       ++.++.
T Consensus       212 ~~~~i~~~S~SK~~~~~GlRiG~i--~~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~  277 (364)
T PRK07865        212 HTGLLAVHSLSKQSNLAGYRAGFV--AGD-PA----LVAELLEVRKHAGMMVPAPVQAAMVAALGDD-------AHVREQ  277 (364)
T ss_pred             cceEEEEeechhccCCCceeeEEE--ecC-HH----HHHHHHHHHHhcCCCcCHHHHHHHHHHhCCH-------HHHHHH
Confidence            368999999999999999999999  454 44    4444444444444577888999998888764       446677


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC--CHHHHHHhHhhccEEEcCCC----------eEEecCCCC
Q 015435          322 ADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG----------RISMAGLSS  389 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~  389 (407)
                      ++.++++++.+.+.|++.|    +.+..+.+|+|.|+.+  +...+.+.+.++||.+.||.          ||+++. ++
T Consensus       278 ~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~  352 (364)
T PRK07865        278 RERYARRRAVLRPALEAAG----FRVDHSEAGLYLWATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA-TD  352 (364)
T ss_pred             HHHHHHHHHHHHHHHHHcC----CcccCCCccEEEEEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC-CH
Confidence            8889999999999999876    6777788999999865  34445566677999998851          999986 78


Q ss_pred             CChhHHHHHHH
Q 015435          390 KTVPHLTDAIH  400 (407)
Q Consensus       390 e~i~~~~~~l~  400 (407)
                      +++++++++|+
T Consensus       353 ~~~~~~~~~l~  363 (364)
T PRK07865        353 ERIAAAVERLA  363 (364)
T ss_pred             HHHHHHHHHhh
Confidence            88999998875

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=100.00  E-value=1.1e-42  Score=329.35  Aligned_cols=345  Identities=21%  Similarity=0.276  Sum_probs=270.8

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHH-HHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCC-ceEEeecCCc
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQ-LLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDN-RVTTVQCLSG  109 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t~g~  109 (407)
                      ++|||+.|.+....+.+.++..+++... ...  ......|++..|.+++|+++++++....+..++++ +|++  ++|+
T Consensus         2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~--~~G~   77 (363)
T PF00155_consen    2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAAT--SSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILV--TSGA   77 (363)
T ss_dssp             TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHH--HTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEE--ESHH
T ss_pred             CEEEEECCCCCCcccccchHHHHHHHHHHhhc--ccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEE--eccc
Confidence            6899999987443333345556666655 222  35678899999999999999999964455556667 8999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC-C--CcEEEEecC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP-S--GAIVLLHAC  186 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~--~~~v~i~~~  186 (407)
                      ++++..+..++. ..+||+|++++|+|+.+...++..|.+++.+++..+.++.+|++++++.+.+.+ +  +..++++++
T Consensus        78 ~~~~~~~~~~~~-~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~  156 (363)
T PF00155_consen   78 QAALFLLLRLLK-INPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICN  156 (363)
T ss_dssp             HHHHHHHHHHHH-SSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEES
T ss_pred             ccchhhhhhccc-ccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeecc
Confidence            999988742221 458999999999999999999999999999998766778999999999998531 1  233444599


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      ||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  +..+.........++++++|+||.||++|+|+||+ 
T Consensus       157 p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i-  233 (363)
T PF00155_consen  157 PNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDP--DFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYI-  233 (363)
T ss_dssp             SBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSS--HTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEE-
T ss_pred             cccccccccccccccchhhhhcccccceeeeeceeccccCCC--ccCcccccccccccceeeeeccccccccccccccc-
Confidence            999999999999999999999999999999999999998743  33332333455566999999999999999999999 


Q ss_pred             EeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 015435          267 IVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS  346 (407)
Q Consensus       267 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  346 (407)
                       +++     +.+.+.+......+..  +.+.+.++..++.+...   ..+++++++++++++++++.+.|++.+    +.
T Consensus       234 -~~~-----~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~~l~~~L~~~~----~~  298 (363)
T PF00155_consen  234 -VAP-----PELIERLRRFQRSGLS--SSPMQAAAAAALSDPEL---VEKWLEELRERLRENRDLLREALEEIG----IT  298 (363)
T ss_dssp             -EEE-----HHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTT----SE
T ss_pred             -cch-----hhhhhhhhhccccccc--cchhhHHHHHhhhcccc---cccccccchhhHHHHHHHHHHHHHHhh----hh
Confidence             565     4455556666554433  77888888888876642   223788999999999999999999887    88


Q ss_pred             cccCCceeEEecCCCH----HHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHH
Q 015435          347 HIIKQIGMFTFTGLNS----EQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAI  399 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~~----~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l  399 (407)
                      +..+.+++|.|..++.    ++..++++++||.+.||.        ||+++..+++++++++++|
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  299 VLPPEAGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEALERL  363 (363)
T ss_dssp             EEHHSBSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHHHHH
T ss_pred             eeeccCccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHHhhC
Confidence            8888899999997754    456677776799999963        9999556889999999886

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=100.00  E-value=2.7e-41  Score=323.12  Aligned_cols=339  Identities=17%  Similarity=0.204  Sum_probs=250.3

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc---cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ---SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      +++++|+|+.|.+   .. +.++.+.+++...+. +.   ....+|.|..|.+++|+++++++....   +++++|++  
T Consensus        31 ~~~~~i~l~~~~~---~~-~~~~~v~~~~~~~~~-~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~---~~~d~I~i--  100 (402)
T TIGR03542        31 PSADIIRLGIGDT---TQ-PLPASVIEAFHNAVD-ELASEETFRGYGPEQGYPFLREAIAENDYRGR---IDPEEIFI--  100 (402)
T ss_pred             CCCCeEEcCCCCC---CC-CCCHHHHHHHHHHHh-cccccccccCCCCCCCCHHHHHHHHHHHHhcC---CCHHHEEE--
Confidence            4678999999975   22 344455555555543 21   123569888999999999999874432   66799999  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc-----------eeeEEEeecCCCCCcChhhHHHHHHc
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL-----------SVKTYRYYDPATRGLNFQGLLEDLRA  174 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~-----------~~~~v~~~~~~~~~~d~~~l~~~i~~  174 (407)
                      |+|+++++.++.   ..+.+||+|++++|+|..+...++..|.           +++.+++..+.++..|++   +    
T Consensus       101 t~Ga~~al~~l~---~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~----  170 (402)
T TIGR03542       101 SDGAKCDVFRLQ---SLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLP---E----  170 (402)
T ss_pred             CCCcHHHHHHHH---HhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCcc---c----
Confidence            999999998763   3467899999999999999999999999           999998742333333322   1    


Q ss_pred             CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435          175 APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN  254 (407)
Q Consensus       175 ~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
                      .++++++++ ++||||||++++.+++++|+++|++||++||+||+|.+|.+++.  ...++..+....+++++++||||.
T Consensus       171 ~~~~~~i~l-~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~~~SfSK~  247 (402)
T TIGR03542       171 EPKIDIIYL-CSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPS--LPHSIFEIPGAKECAIEFRSFSKT  247 (402)
T ss_pred             cCCceEEEE-eCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCC--CCcchhhCCCCcccEEEEecCccc
Confidence            135677777 79999999999999999999999999999999999999987531  112222222223578999999999


Q ss_pred             ccccCCCcceeEEeecChhhH----HHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 015435          255 MGLYGERVGALSIVCKTEDVA----SRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQ  330 (407)
Q Consensus       255 ~~~~G~r~G~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  330 (407)
                      ||+||+|+||+  +++ +++.    +.+.............+++.+.|.++..++.+...     +...+.++.++++++
T Consensus       248 ~g~pGlRiG~~--i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~~~  319 (402)
T TIGR03542       248 AGFTGVRLGWT--VVP-KELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL-----QPILEAISYYMENAR  319 (402)
T ss_pred             cCCCCcceEEE--Eec-HHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch-----hHHHHHHHHHHHHHH
Confidence            99999999999  565 3332    11112222222222335778889988888876431     335566788899999


Q ss_pred             HHHHHHHhcCCCCCcccccCCceeEEecCC----CH-HHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHH
Q 015435          331 QLFDALSARGTPGDWSHIIKQIGMFTFTGL----NS-EQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHL  395 (407)
Q Consensus       331 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~  395 (407)
                      .+.+.|++.+    +.+..+.+++|.|+.+    +. ++...+++++||.+.||.          ||+++. ++++++.+
T Consensus       320 ~~~~~L~~~~----~~~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~  394 (402)
T TIGR03542       320 ILRKALEAAG----FKVYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG-KRENIVEA  394 (402)
T ss_pred             HHHHHHHhcC----ceecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHH
Confidence            9999998876    6667778899999966    33 456677777899999862          999876 88999999


Q ss_pred             HHHHHHHH
Q 015435          396 TDAIHAAV  403 (407)
Q Consensus       396 ~~~l~~~l  403 (407)
                      +++|+++|
T Consensus       395 l~~l~~~~  402 (402)
T TIGR03542       395 CERIKEAL  402 (402)
T ss_pred             HHHHHhhC
Confidence            99998753

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.4e-41  Score=320.21  Aligned_cols=336  Identities=15%  Similarity=0.117  Sum_probs=250.9

Q ss_pred             CCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCC
Q 015435           15 EDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGAD   92 (407)
Q Consensus        15 ~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~   92 (407)
                      ..++++..+...  ..++.+++||+.|.|   .. +.++...++ +....    ....|+++.|.+++|+++++++....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~p---~~-~~~~~~~~~-~~~~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~   73 (357)
T TIGR03539         3 DFPWDSLAPYKAKAASHPDGIVDLSVGTP---VD-PVPPLIRAA-LAAAA----DAPGYPQTWGTPELREAIVDWLERRR   73 (357)
T ss_pred             cchHHHHHHHHHHhhhCCCCeEEccCCCC---CC-CCCHHHHHH-HHHHH----hhCCCCcccCCHHHHHHHHHHHHHhc
Confidence            344555544333  234568899999975   33 434444444 33332    24569889999999999999996655


Q ss_pred             CCC-CCCCceEEeecCCcccHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHH
Q 015435           93 SPA-IKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLE  170 (407)
Q Consensus        93 ~~~-~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  170 (407)
                      +.. +++++|++  |+|+++++..+.  ... +.+||.|++++|+|+.+...++..|.+++.++         +++.+..
T Consensus        74 ~~~~~~~~~I~i--t~G~~~~i~~~~--~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~---------~~~~l~~  140 (357)
T TIGR03539        74 GVPGLDPTAVLP--VIGTKELVAWLP--TLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD---------DPTELDP  140 (357)
T ss_pred             CCCCCCcCeEEE--ccChHHHHHHHH--HHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC---------ChhhcCc
Confidence            654 78899999  999999999874  222 57999999999999999999999999987773         1222221


Q ss_pred             HHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH--HHHcCCcEEEE
Q 015435          171 DLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM--FVADGGECLVA  248 (407)
Q Consensus       171 ~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~--~~~~~~~~i~~  248 (407)
                           ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ...+..  .....++++++
T Consensus       141 -----~~~~~v~~-~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~~~~~~vi~~  212 (357)
T TIGR03539       141 -----VGPDLIWL-NSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRP--VSILDPRVCGGDHTGLLAV  212 (357)
T ss_pred             -----cCccEEEE-eCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCC--ccceecccCCCccccEEEE
Confidence                 35667666 799999999999999999999999999999999999988875421  111110  01123579999


Q ss_pred             EecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435          249 QSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       249 ~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  328 (407)
                      +||||.|+++|+|+||+  +++ ++    +...+.........+++.++|.++..++++.       .+.+..++.++++
T Consensus       213 ~S~SK~~~~~G~R~G~~--i~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~  278 (357)
T TIGR03539       213 HSLSKRSNLAGYRAGFV--AGD-PA----LVAELLTVRKHAGLMVPAPVQAAMVAALGDD-------GHVAEQKARYAAR  278 (357)
T ss_pred             eccccccCCCceeEEEE--ecC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHcCCH-------HHHHHHHHHHHHH
Confidence            99999999999999999  555 44    4444444444444578888999999888763       4456778889999


Q ss_pred             HHHHHHHHHhcCCCCCcccccCCceeEEecCC--CHHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHH
Q 015435          329 RQQLFDALSARGTPGDWSHIIKQIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLT  396 (407)
Q Consensus       329 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~  396 (407)
                      ++++.+.|++.|    +.+..|.+|+|.|+.+  +...+.+.|.++||.+.||.          ||+++. +++++++++
T Consensus       279 ~~~~~~~L~~~g----~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~~i~~~~  353 (357)
T TIGR03539       279 RAQLKPALEKAG----FRIDHSEAGLYLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA-TDERIAAAV  353 (357)
T ss_pred             HHHHHHHHHHcC----CCCcCCCccEEEEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC-CHHHHHHHH
Confidence            999999998876    6777888999999965  44445566677999998862          999997 778888888


Q ss_pred             HHH
Q 015435          397 DAI  399 (407)
Q Consensus       397 ~~l  399 (407)
                      ++|
T Consensus       354 ~~l  356 (357)
T TIGR03539       354 ARL  356 (357)
T ss_pred             Hhh
Confidence            776

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=2.1e-41  Score=318.76  Aligned_cols=324  Identities=14%  Similarity=0.098  Sum_probs=251.7

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      ..++|+|+.|.+    ..+.++.+++++.+.+.  .  ...| |..|.+++|+++++++ +     +++++|++  |+|+
T Consensus        28 ~~~~i~l~~nen----~~~~~~~v~~a~~~~~~--~--~~~Y-p~~g~~~Lr~aia~~~-~-----~~~~~I~v--t~Gs   90 (366)
T PRK01533         28 DHSFVKLASNEN----PFGCSPRVLDELQKSWL--D--HALY-PDGGATTLRQTIANKL-H-----VKMEQVLC--GSGL   90 (366)
T ss_pred             CCceEEeCCCCC----CCCCCHHHHHHHHHHHH--h--cCcC-CCCCHHHHHHHHHHHh-C-----CCcceEEE--CCCH
Confidence            468999999984    22455566666655554  1  2235 7789999999999998 4     45689999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++.+++  ...+.+||+|++++|+|..|...+...|.+++.++++   ++++|++++++.+.  ++++++++ ++|||
T Consensus        91 ~e~i~~~~--~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~---~~~~d~~~l~~~~~--~~~~~v~i-~~P~N  162 (366)
T PRK01533         91 DEVIQIIS--RAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NGVYDLDEISSVVD--NDTKIVWI-CNPNN  162 (366)
T ss_pred             HHHHHHHH--HHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC---CCCcCHHHHHHHhC--cCCcEEEE-eCCCC
Confidence            99999985  3347899999999999999999999999999999983   34799999999886  55677776 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||.+++.+++++|+++|++++ ++|+||+|.+|.+.+.   ..+........+++|+++||||.||++|+|+||+  ++
T Consensus       163 PTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~---~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~--i~  236 (366)
T PRK01533        163 PTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD---FPETLPLLEKHKNILVLRTFSKAYGLASFRVGYA--VG  236 (366)
T ss_pred             CCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc---CcchhHHhccCCCEEEEeCchHHhcChHHHHhHH--hC
Confidence            9999999999999999999877 5677999998876431   1111122334578999999999999999999999  56


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      + ++    +.+.+.....  .++.+.++|.++..+|++.       .+.++.++..+++++++.+.++..|    +.+..
T Consensus       237 ~-~~----~~~~l~~~~~--~~~~~~~~q~aa~~~l~~~-------~~~~~~~~~~~~~r~~~~~~l~~~g----~~~~~  298 (366)
T PRK01533        237 H-EE----LIEKLNVVRL--PFNVSSLAQKAATIAFGDD-------EFIEEIVRVNTEGLRQYESFCKENE----IPFYQ  298 (366)
T ss_pred             C-HH----HHHHHHHhcC--CCCcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHhCC----CccCC
Confidence            5 44    4444444432  3578999999999999865       4455666777778888888888777    66667


Q ss_pred             CCceeEEecCC-CHHHHHHhHhhccEEEcCCC---eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          350 KQIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG---RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       350 ~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg---Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +.+ .|.|+.+ +.+.+...|.++||.+.+..   ||+++  +.+++++++++|+++++.
T Consensus       299 ~~~-nf~~~~~~~~~~~~~~l~~~GI~Vr~~~~~iRis~~--~~~~~~~l~~al~~~~~~  355 (366)
T PRK01533        299 SQT-NFIFLPVENGGEIYEACAHAGFIIRPFPNGVRITVG--TREQNEGVISVLQQHFEN  355 (366)
T ss_pred             CcC-cEEEEeCCCHHHHHHHHHHCCcEEccCCCceEEeCC--CHHHHHHHHHHHHHHHHh
Confidence            754 5777766 44555566667999998854   99988  578999999999998764

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-40  Score=314.82  Aligned_cols=333  Identities=18%  Similarity=0.219  Sum_probs=248.6

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCC--CCCCCCCceEEeecCC
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGAD--SPAIKDNRVTTVQCLS  108 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~--~~~~~~~~i~~~~t~g  108 (407)
                      ..+++|+.|.+    ..+.|+.+.+++.+.+. .......| |..|.++||+++++++...+  +..+++++|++  |+|
T Consensus        28 ~~~~~l~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~Y-~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~i--t~G   99 (374)
T PRK02610         28 IQLDRLDTNEF----PYDLPPDLKQKLAWLYQ-QGIESNRY-PDGGHEALKQAIAEYVNESAAGSSQITPANISV--GNG   99 (374)
T ss_pred             cceeEecCCCC----CCCCCHHHHHHHHHHHh-hcccccCC-CCCchHHHHHHHHHHhCccccccCCCCHHHEEE--cCC
Confidence            35899999985    22556666666666554 11123458 55799999999999994433  35577899999  999


Q ss_pred             cccHHHHHHHHHHhhcCCC-eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC--CCCcEEEEec
Q 015435          109 GTGSLRVGAEFLARHYHQL-TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--PSGAIVLLHA  185 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd-~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--~~~~~v~i~~  185 (407)
                      +++++..++  ...+.+|| .|++++|+|..|...++..|++++.+++ +++++++|++++++.+.+.  ++.+++++ +
T Consensus       100 a~~al~~~~--~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~~~~~~~~~k~i~l-~  175 (374)
T PRK02610        100 SDELIRSLL--IATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR-DPETFEIDLAAAQSAIEQTQNPPVRVVFV-V  175 (374)
T ss_pred             hHHHHHHHH--HHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC-CcccCCCCHHHHHHHHHhhcCCCceEEEE-e
Confidence            999998763  44456776 8999999999999999999999999998 3445899999999988631  35667777 7


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCccee
Q 015435          186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGAL  265 (407)
Q Consensus       186 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  265 (407)
                      +||||||.+++.+++++|+++|  ++++||+||+|.+|.+..      .+..+ ...+++|+++||||.||++|+|+||+
T Consensus       176 ~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~------~~~~~-~~~~~~ivi~SfSK~~g~~GlRiG~~  246 (374)
T PRK02610        176 HPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTT------LVGEL-AQHPNWVILRTFSKAFRLAAHRVGYA  246 (374)
T ss_pred             CCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCccc------hHHHH-hcCCCEEEEEecchhccCcccceeee
Confidence            8999999999999999999887  499999999999886421      12222 23467889999999999999999999


Q ss_pred             EEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 015435          266 SIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDW  345 (407)
Q Consensus       266 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  345 (407)
                        +++ ++    +.+.+.....  .++.+.+.|.++..++++.+      .+.+.+++.++ .++.+.+.|+.++.   +
T Consensus       247 --v~~-~~----l~~~l~~~~~--~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~-~r~~l~~~L~~~~~---~  307 (374)
T PRK02610        247 --IGH-PE----LIAVLEKVRL--PYNLPSFSQLAAQLALEHRQ------ELLAAIPEILQ-ERDRLYQALQELPQ---L  307 (374)
T ss_pred             --ecC-HH----HHHHHHHhcC--CCCCCHHHHHHHHHHhcCHH------HHHHHHHHHHH-HHHHHHHHHHhCCC---c
Confidence              565 44    4444444432  24678889999988887643      33444444444 46778888877632   4


Q ss_pred             ccccCCceeEEecCC----CHHHHHHhHhhccEEEcCCC---eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          346 SHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSDG---RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       346 ~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~gg---Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+ .|.+|+|.|+.+    +.+.+...+.++||.+.++.   ||+++.  ++++++++++|+++++.+
T Consensus       308 ~~-~p~~g~f~~~~l~~~~~~~~~~~~l~~~gi~v~~~~~~lRls~~~--~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        308 RV-WPSAANFLYLRLSQDAALAALHQALKAQGTLVRHTGGGLRITIGT--PEENQRTLERLQAALTQL  372 (374)
T ss_pred             Ee-CCCcceEEEEeCCCCCCHHHHHHHHHHCCEEEEeCCCeEEEeCCC--HHHHHHHHHHHHHHHhhc
Confidence            44 467889999865    34555555677999998753   999884  467899999999998765

>PRK06836 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.7e-40  Score=315.36  Aligned_cols=341  Identities=16%  Similarity=0.216  Sum_probs=261.9

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      ..+++||+.|.|   .. +.+..+.+++...+........+|.+..|++++|+.+++++...++..+++++|++  |+|+
T Consensus        32 ~~~~~~l~~g~p---~~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~--t~G~  105 (394)
T PRK06836         32 ADNVFDFSLGNP---SV-PPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVM--TCGA  105 (394)
T ss_pred             CCCeEEecCcCC---CC-CCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEE--eCCh
Confidence            367899999864   32 33434444443333311123577988899999999999999655555677899999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++..++  ...+.+||.|++++|+|..+...++..|++++.++++ ++++++|++++++.+.  ++++++++ ++|+|
T Consensus       106 ~~al~~~~--~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~-~~~~~~d~~~l~~~~~--~~~~~v~~-~~p~N  179 (394)
T PRK06836        106 AGALNVAL--KAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD-TDTFQPDLDALEAAIT--PKTKAVII-NSPNN  179 (394)
T ss_pred             HHHHHHHH--HHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecC-CccCcCCHHHHHhhcC--cCceEEEE-eCCCC
Confidence            99999884  3447899999999999999999999999999999984 4457899999999987  56777776 78999


Q ss_pred             CCCCCCCHHHHHHHHHHHHH------cCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435          190 PTGVDPTLEQWEQIRQLMRS------KGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG  263 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~------~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  263 (407)
                      |||.+++.+++++|+++|++      ||+++|+||+|.++.+++.  ....+   ....+++++++||||.|++||+|+|
T Consensus       180 PtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~---~~~~~~~i~~~S~SK~~~~pGlRiG  254 (394)
T PRK06836        180 PTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGA--EVPYI---FKYYDNSIVVYSFSKSLSLPGERIG  254 (394)
T ss_pred             CCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCC--CCCCh---HHccCcEEEEecchhhccCcceeeE
Confidence            99999999999999999999      8999999999999987542  11121   2235689999999999999999999


Q ss_pred             eeEEeecChhhHH--HHHHHHhhhhhc-ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          264 ALSIVCKTEDVAS--RVESQLKLVIRP-MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       264 ~~~~v~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      |+  +++ ++..+  .+...+....+. ...+++.+.|.++..++.+..           .++.++++++.+.+.|++.|
T Consensus       255 ~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----------~~~~~~~~r~~l~~~L~~~g  320 (394)
T PRK06836        255 YI--AVN-PEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATV-----------DVSIYKRNRDLLYDGLTELG  320 (394)
T ss_pred             EE--ecC-HHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH-----------HHHHHHHHHHHHHHHHHhCC
Confidence            99  454 33221  123323222222 123677888999888887531           24567788899999998876


Q ss_pred             CCCCcccccCCceeEEecCC---CHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          341 TPGDWSHIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                          +.+..+.+|+|.|+.+   +...+.+.|.++||.+.||.        ||+++. ++++++.++++|++++++.
T Consensus       321 ----~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~-~~~~~~~~i~~l~~~l~~~  392 (394)
T PRK06836        321 ----FECVKPQGAFYLFPKSPEEDDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYCV-DTETIERSLPAFEKLAKEY  392 (394)
T ss_pred             ----CEeecCCceEEEEEeCCCCCHHHHHHHHHhCCEEEECchhcCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence                7778888999999855   44444466677899999972        999984 8999999999999998763

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=8e-40  Score=307.51  Aligned_cols=336  Identities=15%  Similarity=0.153  Sum_probs=251.4

Q ss_pred             hhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCC
Q 015435           18 ILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIK   97 (407)
Q Consensus        18 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~   97 (407)
                      +.++.+..+. ..++++||+.|.+  +.  +.|+.+.+++.+.+.    ...+|+ ..+.+++|+++++++ +     ++
T Consensus         7 ~~~~~~~~~~-~~~~~~~l~~~~~--~~--~~p~~~~~a~~~~~~----~~~~Y~-~~~~~~lr~~ia~~~-~-----~~   70 (354)
T PRK06358          7 INEIAREKGL-TKNMILDFSANIN--PL--GVPESLKQAITENLD----KLVEYP-DPDYLELRKRIASFE-Q-----LD   70 (354)
T ss_pred             HHHHHHHhCC-CccceEEecCCCC--CC--CCCHHHHHHHHHHHH----hhhcCC-CccHHHHHHHHHHHh-C-----CC
Confidence            4444444432 2356899999874  22  335555555554442    245684 457899999999998 3     45


Q ss_pred             CCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC
Q 015435           98 DNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS  177 (407)
Q Consensus        98 ~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~  177 (407)
                      +++|++  |+|+++++.++..   .+. +++|++++|+|+.|...++..|.+++.+++..+.++.+| +++.+.+.  .+
T Consensus        71 ~~~i~i--t~Ga~~~l~~~~~---~~~-~~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~--~~  141 (354)
T PRK06358         71 LENVIL--GNGATELIFNIVK---VTK-PKKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIK--EE  141 (354)
T ss_pred             hhhEEE--CCCHHHHHHHHHH---HhC-CCcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhc--cC
Confidence            799999  9999999998843   243 468999999999999999999999999998534456788 66666665  45


Q ss_pred             CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc
Q 015435          178 GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL  257 (407)
Q Consensus       178 ~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~  257 (407)
                      ++++++ ++||||||.+++.+++++|+++|++||+++|+||+|.+|.+++.   ..+........+++++++||||.||+
T Consensus       142 ~~~v~~-~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~---~~~~~~~~~~~~~vi~~~S~SK~~gl  217 (354)
T PRK06358        142 IDLVFL-CNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENE---TISMINYLENFKNLIIIRAFTKFFAI  217 (354)
T ss_pred             CCEEEE-eCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCcc---chhHHHhccCCCCEEEEEechhhccC
Confidence            677766 89999999999999999999999999999999999999987642   22222223445789999999999999


Q ss_pred             cCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          258 YGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALS  337 (407)
Q Consensus       258 ~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  337 (407)
                      +|+|+||+  +++++++.+.+.    ....  .++.+.+.|.++..++++.       +++++.++.++++++.+.+.|+
T Consensus       218 ~G~RiG~l--v~~~~~~~~~~~----~~~~--~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~  282 (354)
T PRK06358        218 PGLRLGYG--LTSNKNLAEKLL----QMRE--PWSINTFADLAGQTLLDDK-------EYIKKTIQWIKEEKDFLYNGLS  282 (354)
T ss_pred             cchhheee--ecCCHHHHHHHH----HhCC--CCcchHHHHHHHHHHhccH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999  576655444433    3332  3467888899999998754       4467778888999999999998


Q ss_pred             hcCCCCCcccccCCceeEEecCCC-HHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHH
Q 015435          338 ARGTPGDWSHIIKQIGMFTFTGLN-SEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +.+.   +.+..+.++ |.|+.+. .+.+.+.|.++||.+.++.          ||+++  ++++.++++++|++++
T Consensus       283 ~~~~---~~~~~~~g~-f~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~~--~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        283 EFKG---IKVYKPSVN-FIFFKLEKPIDLRKELLKKGILIRSCSNYRGLDENYYRVAVK--SREDNKKLLKALEVIL  353 (354)
T ss_pred             cCCC---cEEcCCcce-EEEEEcCchHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence            8632   566677665 7788763 3334444445899998852          88888  5788999999998765

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5.1e-40  Score=311.13  Aligned_cols=332  Identities=16%  Similarity=0.157  Sum_probs=253.5

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCccc
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTG  111 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~  111 (407)
                      ..|+|+.|.+   .. +.|+.+++++.+.+.........| |..|.+++|+++++++...++..+++++|++  |+|+++
T Consensus        27 ~~i~l~~~~~---~~-~~~~~~~~al~~~l~~~~~~~~~Y-~~~g~~~lr~aia~~~~~~~~~~~~~~~I~i--t~G~~~   99 (368)
T PRK03317         27 VPVRLNTNEN---PY-PPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLTAQTGVGLTVENVWA--ANGSNE   99 (368)
T ss_pred             ceeEecCCCC---CC-CCCHHHHHHHHHHHhhhhhhhccC-CCCchHHHHHHHHHHhhhhccCCCChhhEEE--CCCHHH
Confidence            6799999985   22 455566666666554112235667 5578999999999999666566778899999  999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCC
Q 015435          112 SLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPT  191 (407)
Q Consensus       112 a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPt  191 (407)
                      ++.+++  ...+.+||.|+++.|+|..|...++..|.+++.++.  .+++++|++++++++.+. +.+++++ ++|||||
T Consensus       100 ~l~~~~--~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~~~~~-~~~~i~l-~~p~NPt  173 (368)
T PRK03317        100 ILQQLL--QAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPR--AADFTLDVDAAVAAIAEH-RPDVVFL-TSPNNPT  173 (368)
T ss_pred             HHHHHH--HHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEccc--CCCCCCCHHHHHHHHhcc-CCCEEEE-eCCCCCC
Confidence            999995  334789999999999999999999999999988876  345789999999988732 4566666 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecC
Q 015435          192 GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKT  271 (407)
Q Consensus       192 G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~  271 (407)
                      |.+++.+++++|+++|   +++||+||+|.+|.+.+.   . +...+....+++++++||||.||++|+|+||+  +++ 
T Consensus       174 G~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~---~-~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~--~~~-  243 (368)
T PRK03317        174 GTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT---P-SALTLLPEYPRLVVSRTMSKAFAFAGGRLGYL--AAA-  243 (368)
T ss_pred             CCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC---c-CHHHHHHhCCCEEEEEechhhhccchhhhhhh--hCC-
Confidence            9999999999997766   789999999999876532   1 11122233458999999999999999999999  454 


Q ss_pred             hhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC
Q 015435          272 EDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ  351 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  351 (407)
                      ++    +.+.+.....  .++.+.++|.++..++++.+       ...+.+++++++++.+.+.|+..|    +.+..+.
T Consensus       244 ~~----~~~~l~~~~~--~~~~s~~~~~a~~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~  306 (368)
T PRK03317        244 PA----VVDALRLVRL--PYHLSAVTQAAARAALRHAD-------ELLASVAALRAERDRVVAWLRELG----LRVAPSD  306 (368)
T ss_pred             HH----HHHHHHhcCC--CCCCCHHHHHHHHHHhhCHH-------HHHHHHHHHHHHHHHHHHHHHHCC----CEeCCCC
Confidence            44    4444443332  34778889999888887642       233444567888889999998877    6777888


Q ss_pred             ceeEEecCC-CHHHHHHhHhhccEEEcCCC-----eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          352 IGMFTFTGL-NSEQVAFMTKEYHIYMTSDG-----RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       352 ~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg-----Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ++++.|..+ +.+.+.+.+.++||.+.+.+     ||+++  +.+++++++++|+++++.
T Consensus       307 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~--~~~~~~~~~~~l~~~~~~  364 (368)
T PRK03317        307 ANFVLFGRFADRHAVWQGLLDRGVLIRDVGIPGWLRVTIG--TPEENDAFLAALAEVLAT  364 (368)
T ss_pred             CcEEEEeccCCHHHHHHHHHHCCEEEEeCCCCCeEEEecC--CHHHHHHHHHHHHHHHHH
Confidence            998888655 44555555666899998864     89987  567899999999998763

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=9.3e-40  Score=308.06  Aligned_cols=319  Identities=19%  Similarity=0.226  Sum_probs=243.5

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      +.++|+|+.|.+   .. +.++.+.+++.+.+.    ....|+ ..|.++||+++++++ +     +++++|++  |+|+
T Consensus        29 ~~~~i~l~~~~~---~~-~~~~~~~~~~~~~~~----~~~~Y~-~~~~~~lr~~ia~~~-~-----~~~~~I~i--t~G~   91 (357)
T PRK14809         29 PDDLVKLSSNEN---PH-GPSPAAVEAIREAAE----RVHSYP-KASHADLTAALADRW-D-----VSPEQVWL--ANGG   91 (357)
T ss_pred             ccceeEecCCCC---CC-CCCHHHHHHHHHHHh----hhhcCC-CCCHHHHHHHHHHHh-C-----CCcceEEE--CCCH
Confidence            468999999974   22 334455555544443    245684 578999999999998 3     45689999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++.++.  ...+.+||.|++++|+|..+.......|.+++.+++..++++.++++++.+...   +++++++ ++|||
T Consensus        92 ~~al~~~~--~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~---~~k~i~l-~~p~N  165 (357)
T PRK14809         92 DGALDYLA--RAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD---GERIVYL-TSPHN  165 (357)
T ss_pred             HHHHHHHH--HHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc---CCcEEEE-eCCCC
Confidence            99999984  334789999999999999898888899999999998533456677777766542   4567777 79999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||.+++.+++++|+++|++ +++||+||+|.++.+.+   .  ... .....+++++++||||.|+++|+|+||+  ++
T Consensus       166 PTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~---~--~~~-~~~~~~~vi~~~SfSK~~~~~GlRiG~~--~~  236 (357)
T PRK14809        166 PTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP---S--AVA-LVEERDDVAVLRTFSKAYGLAGLRLGYA--VV  236 (357)
T ss_pred             CCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc---h--hHH-HHhhCCCEEEEecchhHhcCcchhheee--ec
Confidence            99999999999999999975 78999999999988642   1  111 2234578999999999999999999999  56


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      + ++    +.+.+.....  ..+.+.++|.++..++.+.       +++++.++.++++++++.+.|+...    +    
T Consensus       237 ~-~~----~~~~~~~~~~--~~~~~~~~~~~a~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~----~----  294 (357)
T PRK14809        237 P-EE----WADAYARVNT--PFAASELACRAGLAALDDD-------EHVERTVETARWAREYIREELDAPT----W----  294 (357)
T ss_pred             C-HH----HHHHHHHhCC--CCCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHhcCcc----C----
Confidence            5 33    4444444432  3467888889888888753       4566777888889999999885432    2    


Q ss_pred             CCceeEEecCC-CHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHHH
Q 015435          350 KQIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       350 ~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      +.+|+|.|+.+ +.+.+.+.+.++||.+.+|.        ||+++  +++++++++++|+++++
T Consensus       295 ~~~g~f~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~--~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        295 ESAGNFVLAEVGDASAVAEAAQERGVIVRDCTSFGLPECIRITCG--TREETERAVEVLNEVLA  356 (357)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHCCEEEEECccCCCCCeEEEecC--CHHHHHHHHHHHHHHhc
Confidence            45778888877 44444455677899999873        99987  46899999999999875

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=100.00  E-value=2.1e-39  Score=311.98  Aligned_cols=349  Identities=14%  Similarity=0.104  Sum_probs=248.7

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc---cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ---SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ..+++|+|+.|.|   +..|.+.+.+.++.....+..   .....|++..|.+++|+++++++...++..+++++|++  
T Consensus        28 ~~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~i--  102 (416)
T PRK09440         28 RTPGAIMLGGGNP---AHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIAL--  102 (416)
T ss_pred             cCCCceeccCCCC---CccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEE--
Confidence            3467899999986   322444455555555443121   23357999999999999999999665566678899999  


Q ss_pred             cCCcccHHHHHHHHHHhh---cCCCeEEe-cCCCCCChHHHHhhcC----ceeeEEEeecC-CCCCcChhhHHHHHHcCC
Q 015435          106 CLSGTGSLRVGAEFLARH---YHQLTIYI-PQPTWGNHPKVFTLAG----LSVKTYRYYDP-ATRGLNFQGLLEDLRAAP  176 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~---~~gd~Vi~-~~p~y~~~~~~~~~~G----~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~  176 (407)
                      |+|+++++.++...+...   .+||.|++ .+|+|+.|.......|    .....+++..+ ..+++|+++++  +.  +
T Consensus       103 t~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~--~  178 (416)
T PRK09440        103 TNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID--E  178 (416)
T ss_pred             ccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cC--C
Confidence            999999999985444211   25899999 6999999988655333    22223333211 13678998887  23  4


Q ss_pred             CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccc
Q 015435          177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMG  256 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~  256 (407)
                      +++++++ ++||||||++++.+++++|+++|++|+++||+||+|..+... .  ...+.  .....+++|+++||||. +
T Consensus       179 ~~~~i~l-~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~-~--~~~~~--~~~~~~~vI~~~SfSK~-~  251 (416)
T PRK09440        179 DTGAICV-SRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPG-I--IFSEA--TPLWNPNIILCMSLSKL-G  251 (416)
T ss_pred             CceEEEE-ecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCC-c--chhhc--CccccCCeEEEeccccc-C
Confidence            4556555 999999999999999999999999999999999999754321 0  00111  01124689999999996 8


Q ss_pred             ccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHH-HHHHHHHHHHHHHHH
Q 015435          257 LYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKA-MADRIISMRQQLFDA  335 (407)
Q Consensus       257 ~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~  335 (407)
                      ++|+|+||+  +++ +    .+.+.+.........+++.+.|.++..++.+..+    .++..+ +++.++++++.+.+.
T Consensus       252 ~pGlRiG~~--i~~-~----~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~r~~~~~~~  320 (416)
T PRK09440        252 LPGVRCGIV--IAD-E----EIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL----LRLSETVIRPFYRQKVQLAIAL  320 (416)
T ss_pred             CCcceEEEE--eCC-H----HHHHHHHHHHHHhccCCCcHHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999  565 4    4555555555555567899999999999987642    233333 567778888888888


Q ss_pred             HHhcCCCCCcccccCCceeEEecCC-----CHHHHHHhHhhccEEEcCC---------------C--eEEecCCCCCChh
Q 015435          336 LSARGTPGDWSHIIKQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSD---------------G--RISMAGLSSKTVP  393 (407)
Q Consensus       336 l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~g---------------g--Ris~~~~~~e~i~  393 (407)
                      |.+.-....+.+..|.+|+|.|+.+     +.+.+...+.++||.+.||               +  ||+++. ++++++
T Consensus       321 L~~~l~~~~~~~~~p~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~-~~~~l~  399 (416)
T PRK09440        321 LRRYLPDEPCLIHKPEGAIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ-DDEEIE  399 (416)
T ss_pred             HHHhcccCCeEEecCCCceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecC-CHHHHH
Confidence            7653100015567888999999854     3344445567789999873               1  899986 789999


Q ss_pred             HHHHHHHHHHHh
Q 015435          394 HLTDAIHAAVTR  405 (407)
Q Consensus       394 ~~~~~l~~~l~~  405 (407)
                      .++++|++++++
T Consensus       400 ~~i~~l~~~~~~  411 (416)
T PRK09440        400 KGIAILAEEVEK  411 (416)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=4e-39  Score=298.02  Aligned_cols=322  Identities=20%  Similarity=0.271  Sum_probs=256.0

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      +++++|+.++    +..+.|+.+..++...+.    ..+.| |.....++++++++++ +.    .++++|++  ++|++
T Consensus        22 ~~~i~LssNe----nP~gp~~~~~~~~~~~~~----~~~rY-Pd~~~~~l~~a~a~~~-~~----~~~~~V~~--gnGsd   85 (356)
T COG0079          22 PGIIKLSSNE----NPYGPPPKVIEAIRAALD----KLNRY-PDPDYRELRAALAEYY-GV----VDPENVLV--GNGSD   85 (356)
T ss_pred             ccceeecCCC----CCCCCCHHHHHHHHHHHH----hhccC-CCCcHHHHHHHHHHHh-CC----CCcceEEE--cCChH
Confidence            4799999886    222223344444434332    46667 5568999999999999 42    34589999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP  190 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP  190 (407)
                      +.+..+.  ...+.+||+|+++.|+|..|...++..|++++.++..  + +.+|++.+.+.+.  ++++++++ ||||||
T Consensus        86 e~i~~l~--~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~--~-~~~d~~~~~~~~~--~~~~lv~i-~nPNNP  157 (356)
T COG0079          86 ELIELLV--RAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLK--E-FRLDLDAILAAIR--DKTKLVFL-CNPNNP  157 (356)
T ss_pred             HHHHHHH--HHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEeccc--c-cccCHHHHHHhhh--cCCCEEEE-eCCCCC
Confidence            9999995  4447799999999999999999999999999999994  3 8899999999998  46788888 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435          191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK  270 (407)
Q Consensus       191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~  270 (407)
                      ||..++.++++++++.+.+ +.+||+||+|.+|...    +  ... +....+++++++||||+||++|+|+||+  ++.
T Consensus       158 TG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~----~--~~~-l~~~~~nlivlRTfSKa~gLAGlRlGy~--ia~  227 (356)
T COG0079         158 TGTLLPREELRALLEALPE-GGLVVIDEAYIEFSPE----S--SLE-LLKYPPNLIVLRTFSKAFGLAGLRVGYA--IAN  227 (356)
T ss_pred             CCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCCc----h--hhh-hccCCCCEEEEEecHHhhhcchhceeec--cCC
Confidence            9999999999999999998 9999999999999962    1  121 2235678999999999999999999998  455


Q ss_pred             ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 015435          271 TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  350 (407)
                           ..+.+.+.....++  +.+.+++.++..++++.       +++++.++++.+.++.+.+.|+..+.   ..+.+.
T Consensus       228 -----~~~i~~l~~vr~p~--~v~~~a~~aa~aal~~~-------~~~~~~~~~~~~~r~rl~~~l~~~~~---~~v~pS  290 (356)
T COG0079         228 -----PELIAALNKVRPPF--NVSSPALAAAIAALRDA-------DYLEESVERIREERERLYAALKALGL---FGVFPS  290 (356)
T ss_pred             -----HHHHHHHHHhcCCC--CCCHHHHHHHHHHcccH-------HHHHHHHHHHHHHHHHHHHHHHhCCC---CeecCC
Confidence                 55666677776554  88889999999999876       56788889999999999999999872   235555


Q ss_pred             CceeEEecCCC---HHHHHHhHhhccEEEcCCC---------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          351 QIGMFTFTGLN---SEQVAFMTKEYHIYMTSDG---------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       351 ~~~~~~~~~~~---~~~~~~~l~~~gi~~~~gg---------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      . +.|+++...   ...+.+.|.++||.++..+         ||+++  ++++.++++++|+++++..
T Consensus       291 ~-aNFvlv~~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~lRitvg--t~een~~ll~AL~~~~~~~  355 (356)
T COG0079         291 Q-ANFVLVRVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRITVG--TPEENDRLLAALREVLKGL  355 (356)
T ss_pred             C-CcEEEEECCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeC--CHHHHHHHHHHHHHHHhcc
Confidence            5 456666553   3356666677899997651         99998  5677799999999988653

>PLN02672 methionine S-methyltransferase

Probab=100.00  E-value=3.6e-39  Score=327.69  Aligned_cols=345  Identities=13%  Similarity=0.083  Sum_probs=257.0

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCC-CceEEeecC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKD-NRVTTVQCL  107 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~-~~i~~~~t~  107 (407)
                      ++.++|+|+.|.+   .. +.|+.+.+++.+.+.  .   .++  ..|.+++++++++++...++...++ ++|++  |+
T Consensus       695 ~g~~vI~LsinE~---d~-ppPp~V~eAi~eal~--~---~~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIv--t~  761 (1082)
T PLN02672        695 QESSLIHMDVDES---FL-PVPSAVKASIFESFV--R---QNI--SESETDPRPSILQFIKSNYGFPTDSCTEFVY--GD  761 (1082)
T ss_pred             CCCCEEEEeCCCC---CC-CCCHHHHHHHHHHHh--h---cCC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEE--eC
Confidence            4578999999985   33 666666666666554  1   112  2356778999999996655665543 58999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA  187 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p  187 (407)
                      |+++++..+.  ...+++||.|+++.|+|+.|...++..|.+++.+|+..++++.+|++.+++++... .++.+++ ++|
T Consensus       762 Gs~elL~lll--~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~-~~~~I~L-~nP  837 (1082)
T PLN02672        762 TSLALFNKLV--LCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETV-KKPWVYI-SGP  837 (1082)
T ss_pred             CHHHHHHHHH--HHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC-CCCEEEE-ECc
Confidence            9999998884  44478999999999999999999999999999999954456888999999998621 2456666 888


Q ss_pred             C-CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH---Hc---CCcEEEEEecCccccccCC
Q 015435          188 H-NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV---AD---GGECLVAQSYAKNMGLYGE  260 (407)
Q Consensus       188 ~-NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~---~~---~~~~i~~~s~sK~~~~~G~  260 (407)
                      + ||||.+++.+++++|+++|++||++||+||+|.++.+++......++....   ..   ..++++++||||.|+++|+
T Consensus       838 nhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGL  917 (1082)
T PLN02672        838 TINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGH  917 (1082)
T ss_pred             CCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHH
Confidence            6 999999999999999999999999999999999998864221111111111   11   2379999999999999999


Q ss_pred             CcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHH---hcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          261 RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI---LKDSTMYKEWTLELKAMADRIISMRQQLFDALS  337 (407)
Q Consensus       261 r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  337 (407)
                      |+||+  +++++++.+.+..    .....  .+....+.++..+   +.+..  ..|.+++.+.++.++++++++.+.|+
T Consensus       918 RIGyl--Iap~~eLi~~l~~----~~~~s--~~~~~~q~Aaaaalall~~~~--~~~~~~l~e~r~~Lk~rRd~L~e~L~  987 (1082)
T PLN02672        918 EFGFL--ALNDSVLIDAFHS----APGLS--RPHSTLKYTIKKLLGLKNQKS--SDLLDGVAEQKKILKSRAERLKETLE  987 (1082)
T ss_pred             HheeE--EeCCHHHHHHHHH----hhhhc--CCCcHHHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999  6776655555443    22111  2222334333333   32100  13556788889999999999999999


Q ss_pred             hcCCCCCcccccCCceeEEecCC---------------------CHH-HHHHhHhhccEEEcCC---C-----eEEecCC
Q 015435          338 ARGTPGDWSHIIKQIGMFTFTGL---------------------NSE-QVAFMTKEYHIYMTSD---G-----RISMAGL  387 (407)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~l~~~gi~~~~g---g-----Ris~~~~  387 (407)
                      +.+    +.+..|.||||.|+.+                     +.+ +...++++.||.+.||   |     ||+++. 
T Consensus       988 ~~G----i~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa~- 1062 (1082)
T PLN02672        988 ACG----WDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFAL- 1062 (1082)
T ss_pred             HCC----CeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEecC-
Confidence            987    7888999999999842                     233 4567777789999997   2     999996 


Q ss_pred             CCCChhHHHHHHHHHHHh
Q 015435          388 SSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       388 ~~e~i~~~~~~l~~~l~~  405 (407)
                      +++++++++++|+++.+-
T Consensus      1063 ~~e~LeeALerL~kf~~~ 1080 (1082)
T PLN02672       1063 EDSEFDRALKAIARFKEL 1080 (1082)
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            888999999999987653

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=1.2e-38  Score=300.21  Aligned_cols=338  Identities=17%  Similarity=0.166  Sum_probs=247.8

Q ss_pred             CCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCC
Q 015435           15 EDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSP   94 (407)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~   94 (407)
                      +..+.+..+.+.. ++.++++|+.|.+    ..+.|+.+.+++.+.+.  .  ...|+ ..+.+++|+++++++ +    
T Consensus         5 ~~~~~~~~~~~~~-~~~~~i~l~~~~~----~~~~p~~~~~a~~~~~~--~--~~~y~-~~~~~~lr~~ia~~~-~----   69 (356)
T PRK08056          5 GGNIREAATVLGI-SPDQLLDFSANIN----PLGMPVSLKRAIIDNLD--C--AERYP-DVEYRHLHQALARHH-Q----   69 (356)
T ss_pred             CccHHHHHHHhCC-ChhhEEEeccccC----CCCCCHHHHHHHHHHHH--h--cccCc-CccHHHHHHHHHHHh-C----
Confidence            3444555554442 2467999999974    22455566666655554  1  23574 457899999999998 3    


Q ss_pred             CCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435           95 AIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA  174 (407)
Q Consensus        95 ~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~  174 (407)
                       +++++|++  |+|+++++.++..   .+.+|+ +++++|+|..|...++..|.+++.+|+.++.++.+| +++++.+. 
T Consensus        70 -~~~~~i~i--t~Ga~~~l~~~~~---~l~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~-  140 (356)
T PRK08056         70 -VPASWILA--GNGETESIFAVVS---GLKPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALT-  140 (356)
T ss_pred             -cChhhEEE--CCCHHHHHHHHHH---HhCCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhcc-
Confidence             34689999  9999999998843   345675 788899999999999999999999998533444555 35555554 


Q ss_pred             CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435          175 APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN  254 (407)
Q Consensus       175 ~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
                       ++++++++ ++||||||.+++.+++++|+++|++++++||+||+|.+|.+.+.  ...+.   ....+++++++||||.
T Consensus       141 -~~~k~v~l-~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~---~~~~~~~i~~~S~SK~  213 (356)
T PRK08056        141 -PDLDCLFL-CTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDET--GFIPQ---LADNPHLWVLRSLTKF  213 (356)
T ss_pred             -CCCCEEEE-eCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcch--HHHHH---hccCCCEEEEEechhh
Confidence             56777776 99999999999999999999999999999999999999986421  11121   2334689999999999


Q ss_pred             ccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          255 MGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       255 ~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                      |+++|+|+||+  ++++++..+.+.    ...  ...+++.++|.++..++++.       .+.++.+++++++++.+.+
T Consensus       214 ~~~~G~RiG~~--v~~~~~~~~~l~----~~~--~~~~~~~~~~~~a~~~l~~~-------~~~~~~~~~~~~~r~~l~~  278 (356)
T PRK08056        214 YAIPGLRLGYL--VNSDDAAVARMR----RQQ--MPWSINAFAALAGEVILQDR-------AYQQATWQWLAEEGARFYQ  278 (356)
T ss_pred             ccCcchhheee--ecCCHHHHHHHH----HhC--CCCchhHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHH
Confidence            99999999999  566555444433    222  23366778888888888754       3456778889999999999


Q ss_pred             HHHhcCCCCCcccccCCceeEEecCC--CHHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHH
Q 015435          335 ALSARGTPGDWSHIIKQIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       335 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~  402 (407)
                      .|+.++.   +.+.++ +++|.|+.+  +.+.+...|.++||.+.+|.          ||+++  ++++.+++++.|+++
T Consensus       279 ~L~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~~l~~~  352 (356)
T PRK08056        279 ALCALPL---LTVWPG-RANYLFLRCERPDIDLQRALLTQRILIRSCANYPGLDSRYYRVAIR--SAAENERLLAALRNV  352 (356)
T ss_pred             HHhcCCC---cEEcCC-CCcEEEEEcCCChHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEc--CHHHHHHHHHHHHHH
Confidence            9988742   555554 567788865  33334444446899998752          99988  568889999999887


Q ss_pred             HH
Q 015435          403 VT  404 (407)
Q Consensus       403 l~  404 (407)
                      ++
T Consensus       353 ~~  354 (356)
T PRK08056        353 LT  354 (356)
T ss_pred             Hc
Confidence            64

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=4.5e-39  Score=303.86  Aligned_cols=320  Identities=15%  Similarity=0.163  Sum_probs=244.9

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      .+++||+.|.+  +.+  .++.+.+++.+.+.     ...|.|..|.+++|+++++++ +     +++++|++  |+|++
T Consensus        29 ~~~i~l~~n~~--~~~--~~~~v~~a~~~~~~-----~~~~~p~~g~~~lr~~ia~~~-~-----~~~~~i~~--t~G~~   91 (359)
T PRK03158         29 EKIVKLASNEN--PYG--PSPKVKEAIAAHLD-----ELALYPDGYAPELRTKVAKHL-G-----VDEEQLLF--GAGLD   91 (359)
T ss_pred             CceEEecCCCC--CCC--CCHHHHHHHHHHHH-----HhhcCCCCcHHHHHHHHHHHh-C-----CCHHHEEE--CCCHH
Confidence            48999999975  222  24444444444443     234667789999999999998 4     34589999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP  190 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP  190 (407)
                      +++..+.  ...+.+||.|++++|+|+.+...+...|.+++.+|+.   ++++|++++++.+.  ++++++++ ++||||
T Consensus        92 ~~l~~~~--~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~~~~~--~~~~~v~i-~~p~NP  163 (359)
T PRK03158         92 EVIQMIS--RALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAID--EQTKIVWI-CNPNNP  163 (359)
T ss_pred             HHHHHHH--HHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHHHhcC--CCCCEEEE-eCCCCC
Confidence            9999884  3346799999999999999999999999999999983   46789999998876  56677776 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435          191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK  270 (407)
Q Consensus       191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~  270 (407)
                      ||.+++.+++.++++.|+ +|+++|+||+|.++.+++....  .+. .....+++++++||||.||++|+|+||+  +++
T Consensus       164 tG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~--~~~-~~~~~~~vi~~~S~SK~~g~~GlRiG~~--v~~  237 (359)
T PRK03158        164 TGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPD--TLP-LLEKYENLIVLRTFSKAYGLAALRVGYG--IAS  237 (359)
T ss_pred             CCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCccccc--HHH-HHHhcCCEEEEEechHhhcCcchhhehh--cCC
Confidence            999999999999988774 6999999999999887532111  112 2344578999999999999999999999  555


Q ss_pred             ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 015435          271 TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  350 (407)
                       ++    +.+.+.....  .++++.++|.++..++++.       ++.++.++.++++++.+.+.|++.+    +.+.++
T Consensus       238 -~~----~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~  299 (359)
T PRK03158        238 -EE----LIEKLNIARP--PFNTTRIAQYAAIAALEDQ-------AFLKECVEKNAEGLEQYYAFCKEYG----LFYYPS  299 (359)
T ss_pred             -HH----HHHHHHHhcC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CeeCCC
Confidence             44    4444444433  2478899999999999764       3455666778888889999888876    555544


Q ss_pred             CceeEEecCC--CHHHHHHhHhhccEEEcCC---C-----eEEecCCCCCChhHHHHHHHHH
Q 015435          351 QIGMFTFTGL--NSEQVAFMTKEYHIYMTSD---G-----RISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       351 ~~~~~~~~~~--~~~~~~~~l~~~gi~~~~g---g-----Ris~~~~~~e~i~~~~~~l~~~  402 (407)
                       +|+|.|+.+  +.+.+.+.|.++||.+.||   |     ||+++  +++++++++++|+++
T Consensus       300 -~g~~i~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~l~~al~~~  358 (359)
T PRK03158        300 -QTNFIFVDTGRDANELFEALLKKGYIVRSGAALGFPTGVRITIG--LKEQNDKIIELLKEL  358 (359)
T ss_pred             -cCcEEEEECCCCHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC--CHHHHHHHHHHHHHh
Confidence             567888865  3444444445689999996   2     99988  678899999999875

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=8.9e-39  Score=302.67  Aligned_cols=325  Identities=18%  Similarity=0.194  Sum_probs=244.2

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      ..++|||+.|.+  +.+  .++.+.+++ ....   ....+|++..| .++|+++++++ +     +++++|++  |+|+
T Consensus        35 ~~~~i~l~~~~~--~~~--~~~~~~~al-~~~~---~~~~~Y~~~~g-~~lr~~ia~~~-~-----~~~~~i~~--t~G~   97 (371)
T PRK05166         35 VPRIAKLGSNEN--PLG--PSPAVRRAF-ADIA---ELLRLYPDPQG-RALREAIAART-G-----VPADRIIL--GNGS   97 (371)
T ss_pred             CcceEEcCCCCC--CCC--CCHHHHHHH-HHHH---HHhhcCCCCcH-HHHHHHHHHHh-C-----cCHHHEEE--cCCH
Confidence            458999999975  222  233444443 3332   23557987788 48999999988 4     24589999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++.+++  ...+.+||.|+++.|+|+.+...++..|++++.++++  .++++|++++++.+.  ++++++++ ++|||
T Consensus        98 ~~~l~~~~--~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~~~--~~~~~v~l-~~p~N  170 (371)
T PRK05166         98 EDLIAVIC--RAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVT--PDLGFDLDALCAAVA--RAPRMLMF-SNPSN  170 (371)
T ss_pred             HHHHHHHH--HHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHhhh--cCCCEEEE-eCCCC
Confidence            99999884  3347899999999999999999999999999999983  347899999999887  45677766 99999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||.+++.+++++|+++|++ ++++|+||+|.++.+++...  .....+....+++++++||||.|+++|+|+||+  ++
T Consensus       171 PtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~--~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~--i~  245 (371)
T PRK05166        171 PVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYP--SALTLLKARGLPWIVLRTFSKAYGLAGLRVGYG--LV  245 (371)
T ss_pred             CCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcc--cHHHHHhhcCCCEEEEeechHhhhcchhheeee--ec
Confidence            99999999999999999875 88999999999998643211  112222233467999999999999999999998  56


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      +++++.+.+..    ...  ..+++.+.|.++..++.+.       .++++.++.++++++.+.+.|++.+    +.+. 
T Consensus       246 ~~~~l~~~~~~----~~~--~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~-  307 (371)
T PRK05166        246 SDPELVGLLDR----VRT--PFNVNGAAQAAALAALDDE-------EHLAKGVALALAERERLKKELAEMG----YRIA-  307 (371)
T ss_pred             CCHHHHHHHHH----hcc--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCc----CeeC-
Confidence            66665554432    222  3467888888888888754       3466777888899999999999886    5543 


Q ss_pred             CCceeEEecCC--CHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHH
Q 015435          350 KQIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       350 ~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +.+|+|.|+++  +.+.+.+.|.++||.+.|+.        ||+++  ++++.+++.+.|+.++
T Consensus       308 p~~g~fl~~~~~~~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~--~~~~~~~l~~~l~~i~  369 (371)
T PRK05166        308 PSRANFLFFDARRPASAVAEALLRQGVIVKPWKQPGFETFIRVSIG--SPEENDHFVAALDKVL  369 (371)
T ss_pred             CCcCCEEEEeCCCCHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC--CHHHHHHHHHHHHHHh
Confidence            45678889865  33444444445799999862        99988  4566788888877654

>PRK09105 putative aminotransferase; Provisional

Probab=100.00  E-value=1.3e-38  Score=300.50  Aligned_cols=319  Identities=17%  Similarity=0.201  Sum_probs=243.0

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      .++.++|+.|.+    ..+.|+.+.+++...+.    ....|++. +.+++|+++++++ +     +++++|++  |+|+
T Consensus        42 ~~~~i~l~~~~~----~~~~~~~~~~a~~~~~~----~~~~Y~~~-~~~~Lr~aia~~~-~-----v~~e~I~i--t~Gs  104 (370)
T PRK09105         42 AEGAVFLNANEC----PLGPSPAARDAAARSAA----LSGRYDLE-LEDDLRTLFAAQE-G-----LPADHVMA--YAGS  104 (370)
T ss_pred             CCCcEEecCCCC----CCCCCHHHHHHHHHHHH----HhcCCCCc-hHHHHHHHHHHHh-C-----cChhhEEE--cCCh
Confidence            468899999974    22556666666655543    12458554 4899999999987 4     34689999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++.++.  ...+.+||+|++++|+|..|...++..|.+++.+++.  .++.+|++++++. .  ++++++++ ++|||
T Consensus       105 ~~ai~~~~--~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~-~--~~~~~v~l-~nP~N  176 (370)
T PRK09105        105 SEPLNYAV--LAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLR--ADGAHDVKAMLAA-D--PNAGLIYI-CNPNN  176 (370)
T ss_pred             HHHHHHHH--HHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCC--CCCCCCHHHHHhc-C--CCCCEEEE-eCCCC
Confidence            99999985  3447799999999999999999999999999999983  3567899999875 2  45677666 99999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||.+++.+++++|++.|+ +++++|+||+|.+|...      .+...+....+++++++||||.||++|+|+||+  ++
T Consensus       177 PTG~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~------~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~--v~  247 (370)
T PRK09105        177 PTGTVTPRADIEWLLANKP-AGSVLLVDEAYIHFSDA------PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLA--AA  247 (370)
T ss_pred             CCCcCcCHHHHHHHHHhCC-CCcEEEEECchHHhccC------cchHHHHhhCCCEEEEecccHhhcCCccceeee--ec
Confidence            9999999999999998764 59999999999877542      122233345678999999999999999999999  55


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      + ++    +.+.+...   ....++.+.|.++..++.+.       +++++.+++++++++.+.+.|++.+    +.+..
T Consensus       248 ~-~~----~i~~l~~~---~~~~~~~~~~~aa~~~L~~~-------~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~~  308 (370)
T PRK09105        248 R-PD----LLAKLARF---GHNPLPVPAAAAGLASLRDP-------KLVPQRRAENAAVREDTIAWLKKKG----YKCTP  308 (370)
T ss_pred             C-HH----HHHHHHhc---CCCCcCHHHHHHHHHHHhCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CCcCC
Confidence            5 44    44444333   23357778888888888764       4567777889999999999999887    67777


Q ss_pred             CCceeEEecCC--CHHHHHHhHhhccEEEcCC-----C--eEEecCCCCCChhHHHHHHHHHHH
Q 015435          350 KQIGMFTFTGL--NSEQVAFMTKEYHIYMTSD-----G--RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       350 ~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~g-----g--Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      +.+++|. +.+  +.+.+.+.|.++||.+..+     +  ||+++  +++++++++++|+++++
T Consensus       309 ~~~~f~~-~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~--~~~~~~~l~~al~~~~~  369 (370)
T PRK09105        309 SQANCFM-VDVKRPAKAVADAMAKQGVFIGRSWPIWPNWVRVTVG--SEEEMAAFRSAFAKVMR  369 (370)
T ss_pred             CCCcEEE-EeCCCCHHHHHHHHHHCCcEEecCCCCCCCeEEEEcC--CHHHHHHHHHHHHHHhh
Confidence            8888775 543  4444444444569988321     2  99988  56779999999988763

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-38  Score=301.72  Aligned_cols=317  Identities=15%  Similarity=0.147  Sum_probs=238.7

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      +.++|+|+.|.+  +.  +.++.+.++ +....    ....| |..+.+++|+++++++ +     +++++|++  |+|+
T Consensus        51 ~~~~i~l~~n~~--p~--~~~~~v~~a-~~~~~----~~~~Y-p~~~~~~lr~~ia~~~-~-----~~~~~I~~--t~Ga  112 (380)
T PLN03026         51 PEDIVKLDANEN--PY--GPPPEVLEA-LGNMK----FPYVY-PDPESRRLRAALAEDS-G-----LESENILV--GCGA  112 (380)
T ss_pred             ccceEEccCCCC--CC--CCCHHHHHH-HHhhH----hhccC-CCCCHHHHHHHHHHHh-C-----cChhhEEE--cCCH
Confidence            468999999973  12  333333333 33221    23446 4567899999999998 4     34689999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++.+++  ...+.+||+|++++|+|..|...++..|++++.++.  +.++.+|++++++.+.. ++++++++ ++|||
T Consensus       113 ~~~i~~~~--~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~~~~-~~~~~v~l-~~P~N  186 (380)
T PLN03026        113 DELIDLLM--RCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPR--TPDFSLDVPRIVEAVET-HKPKLLFL-TSPNN  186 (380)
T ss_pred             HHHHHHHH--HHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec--CCCCCcCHHHHHHHHhc-cCCcEEEE-eCCCC
Confidence            99999984  334679999999999999999999999999999998  33578999999998831 45677777 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||++++.+++++|++.+    +++|+||+|.+|.+.+   ...   ......+++++++||||.||++|+|+||+  ++
T Consensus       187 PTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~---~~~---~~~~~~~~viv~~SfSK~~glaGlRiGy~--~~  254 (380)
T PLN03026        187 PDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQE---SRM---KWVKKYDNLIVLRTFSKRAGLAGLRVGYG--AF  254 (380)
T ss_pred             CCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCc---chH---HHHHhCCCEEEEecchHhhcCccccceee--ec
Confidence            999999999999997653    8999999999987642   111   12334578999999999999999999999  45


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      + +    .+.+.+......  ++.+.++|.++..+|++.       +++++.++.++++++++.+.|++++.   ..+ .
T Consensus       255 ~-~----~~i~~l~~~~~~--~~~~~~~q~aa~~aL~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~~---~~~-~  316 (380)
T PLN03026        255 P-L----SIIEYLWRAKQP--YNVSVAAEVAACAALSNP-------KYLEDVKNALVEERERLFGLLKEVPF---LEP-Y  316 (380)
T ss_pred             C-H----HHHHHHHHhcCC--CCCCHHHHHHHHHHhhCH-------HHHHHHHHHHHHHHHHHHHHHHHCCC---CeE-C
Confidence            5 4    344445444433  467888899999998764       44677788899999999999998762   333 5


Q ss_pred             CCceeEEecCC----CHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHH
Q 015435          350 KQIGMFTFTGL----NSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       350 ~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~  402 (407)
                      +.+++|.|+.+    +.+.+.+.|.++||.+.++.        ||+++  +++++++++++|+++
T Consensus       317 p~~~~f~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~--~~~~~~~l~~al~~~  379 (380)
T PLN03026        317 PSDANFILCRVTSGRDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG--KPEHTDALMEALKQL  379 (380)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC--CHHHHHHHHHHHHHh
Confidence            56777888755    34445544457899998751        99988  456788888887653

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.2e-38  Score=299.47  Aligned_cols=322  Identities=16%  Similarity=0.158  Sum_probs=247.3

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      ...++|+.|.+    +.+.++.+++++.+.+.    ...+|++. +.+++|+++++++ +     +++++|++  |+|++
T Consensus        32 ~~~~~l~~~~~----~~~~~~~~~~a~~~~~~----~~~~Y~~~-~~~~Lr~~ia~~~-~-----~~~~~I~i--t~G~~   94 (369)
T PRK08153         32 PFRARIGANES----GFGPSPSVIAAMREAAA----EIWKYGDP-ENHDLRHALAAHH-G-----VAPENIMV--GEGID   94 (369)
T ss_pred             cceeEecCCCC----CCCCCHHHHHHHHHHHH----HhhcCCCC-ccHHHHHHHHHHh-C-----CCHHHEEE--cCCHH
Confidence            45679999974    33556666666655543    23568654 5899999999998 3     45689999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP  190 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP  190 (407)
                      +++.++.  ...+.+||.|++++|+|+.+...+...|.+++.+|+. .  .++|++++++.+.. ++++++++ ++||||
T Consensus        95 ~~l~~~~--~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~-~--~~~~~~~l~~~~~~-~~~~~i~l-~~P~NP  167 (369)
T PRK08153         95 GLLGLIV--RLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYR-D--DREDLDALLDAARR-ENAPLVYL-ANPDNP  167 (369)
T ss_pred             HHHHHHH--HHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCC-C--CCCCHHHHHHHhcc-cCCcEEEE-eCCCCC
Confidence            9999984  3337899999999999999999999999999999973 2  35889998877642 34566666 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435          191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK  270 (407)
Q Consensus       191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~  270 (407)
                      ||.+++.+++++|+++|+ ++++||+||+|.++.+++   ...++   ....+++++++||||.||++|+|+||+  +++
T Consensus       168 tG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~---~~~~~---~~~~~~~i~~~SfSK~~g~~GlRiG~~--v~~  238 (369)
T PRK08153        168 MGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAG---AAPPI---DTDDPNVIRMRTFSKAYGLAGARVGYA--IGA  238 (369)
T ss_pred             CCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCcc---cchhh---hhcCCCEEEEecchHhccCcchheeee--ecC
Confidence            999999999999999887 499999999999998753   12222   223568999999999999999999999  565


Q ss_pred             ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 015435          271 TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  350 (407)
                       ++    +.+.+......  ++.+.++|.++..++++.       +++++.++.++++++.+.+.|++.|    +... |
T Consensus       239 -~~----~~~~l~~~~~~--~~~s~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~~~~~L~~~g----~~~~-p  299 (369)
T PRK08153        239 -PG----TIKAFDKVRNH--FGMNRIAQAAALAALKDQ-------AYLAEVVGKIAAARDRIAAIARANG----LTPL-P  299 (369)
T ss_pred             -HH----HHHHHHHhhcC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CccC-C
Confidence             44    44444444433  468889999999999764       4466778889999999999998877    5533 5


Q ss_pred             CceeEEecCCC-----HHHHHHhHhhccEEEc-CC-----C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          351 QIGMFTFTGLN-----SEQVAFMTKEYHIYMT-SD-----G--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       351 ~~~~~~~~~~~-----~~~~~~~l~~~gi~~~-~g-----g--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+++|.|+.+.     .+.+.+.+.++||.+. |+     +  ||+++  +++++++++++|+++++.+
T Consensus       300 ~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~--~~~~~~~~~~al~~~~~~~  366 (369)
T PRK08153        300 SATNFVAIDCGRDGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG--PDEELDLFAEALPEALEAA  366 (369)
T ss_pred             CcCcEEEEECCCCcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence            67888888652     3334444446899995 43     1  88988  6789999999999988653

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=100.00  E-value=3.2e-38  Score=297.76  Aligned_cols=320  Identities=16%  Similarity=0.139  Sum_probs=230.2

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      .++|||+.|..    ..+.|+.+.+++.+.+.    ....|++. +..++|+++++++ +     +++++|++  |+|++
T Consensus        22 ~~~i~l~~~~n----~~~~~~~~~~a~~~~~~----~~~~Y~~~-~~~~Lr~aia~~~-~-----v~~~~I~i--t~G~~   84 (360)
T PRK07392         22 DAILDFSASIN----PLGPPESVIAAIQSALS----ALRHYPDP-DYRELRLALAQHH-Q-----LPPEWILP--GNGAA   84 (360)
T ss_pred             ccEEEeCCcCC----CCCCCHHHHHHHHHHHH----HhhcCCCc-CHHHHHHHHHHHh-C-----cChhhEEE--CCCHH
Confidence            57899998863    22445566666554443    25568654 5689999999998 3     45689999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCC---CcChhhHHHHHHcCCCCcEEEEecCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATR---GLNFQGLLEDLRAAPSGAIVLLHACA  187 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~---~~d~~~l~~~i~~~~~~~~v~i~~~p  187 (407)
                      +++.+++   ..+.+||+|++++|+|..+...++..|++++.++++++.++   ..+++++++..   ++++++++ +||
T Consensus        85 ~~i~~~~---~~l~~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l-~nP  157 (360)
T PRK07392         85 ELLTWAG---RELAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL---TPNDGLLL-NNP  157 (360)
T ss_pred             HHHHHHH---HHhCCCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc---cCCCEEEE-eCC
Confidence            9999884   23457899999999999999999999999999998533322   23455554432   34566555 899


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEE
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSI  267 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  267 (407)
                      |||||.+++++++.++   |+++++ +|+||+|.+|.+++.   ..+........+++++++||||.|+++|+|+||+  
T Consensus       158 ~NPTG~~~~~~~l~~l---~~~~~~-~IiDE~y~~~~~~~~---~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~--  228 (360)
T PRK07392        158 HNPTGKLWSREAILPL---LEQFAL-VVVDEAFMDFLPPDA---EQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYA--  228 (360)
T ss_pred             CCCCCCCcCHHHHHHH---HHHCCE-EEEECchhhhccCcc---ccchHHHhhcCCCEEEEEechhhhcCCchheeee--
Confidence            9999999997766555   678885 666999999987542   1222222344578999999999999999999999  


Q ss_pred             eecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435          268 VCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH  347 (407)
Q Consensus       268 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  347 (407)
                      +++ ++    +.+.+.....  .++++.++|.++..++++.       .+.+..++.++++++.+.+.|+.++.   +.+
T Consensus       229 v~~-~~----~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~~---~~~  291 (360)
T PRK07392        229 IAH-PD----RLQRWQQWRD--PWPVNGLAAAAAIAALADR-------DFQQQTWAWLPPAREALFQGLASLPG---LTP  291 (360)
T ss_pred             eCC-HH----HHHHHHhhCC--CCCCCHHHHHHHHHHhccH-------HHHHHHHHHHHHHHHHHHHHHHhCCC---cEE
Confidence            565 33    3344443332  3478899999999999865       23445566788889999999987632   554


Q ss_pred             ccCCceeEEecCC--CH-HHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHH
Q 015435          348 IIKQIGMFTFTGL--NS-EQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       348 ~~~~~~~~~~~~~--~~-~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      . +.+++|.|+.+  +. ++...+++++||.+.||.          ||+++.  .++.+++.+.|..++
T Consensus       292 ~-~~~~~fl~~~~~~~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~l~~al~~~~  357 (360)
T PRK07392        292 L-PSAANFLLVQSQGSALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT--EAENQRLLEALAAIL  357 (360)
T ss_pred             C-CCCCCEEEEEcCCCHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC--HHHHHHHHHHHHHHh
Confidence            4 46788999866  33 345566788899998861          999985  344566666665554

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2e-38  Score=298.96  Aligned_cols=317  Identities=18%  Similarity=0.235  Sum_probs=238.1

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      .++|+|+.|.+   .. +.++.+.+++.+.+.   .....|+ ..+.+++|+++++++ +     +++++|++  |+|++
T Consensus        24 ~~~i~l~~~~~---~~-~~~~~~~~a~~~~~~---~~~~~y~-~~~~~~lr~aia~~~-~-----~~~~~I~i--t~G~~   87 (353)
T PRK05387         24 AKLIKLNTNEN---PY-PPSPKVLEAIRAALG---DDLRLYP-DPNADALRQAIAAYY-G-----LDPEQVFV--GNGSD   87 (353)
T ss_pred             cceeeccCCCC---CC-CCCHHHHHHHHHHhh---hhhhcCC-CCcHHHHHHHHHHHh-C-----CCHHHEEE--cCCHH
Confidence            57899999985   21 334445555544443   2245684 457799999999998 3     45689999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP  190 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP  190 (407)
                      +++.+++  ...+.+||.|++++|+|+.+...++..|++++.++++  +++++|++++++      .++++++ ++||||
T Consensus        88 ~al~~~~--~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~------~~~~v~~-~~P~NP  156 (353)
T PRK05387         88 EVLAHAF--LAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLD--DDFSIDVEDYLR------PNGGIIF-PNPNAP  156 (353)
T ss_pred             HHHHHHH--HHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecC--CCCCCCHHHHHh------cCCEEEE-eCCCCC
Confidence            9999995  3447899999999999999999999999999999983  357899998864      2456555 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435          191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK  270 (407)
Q Consensus       191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~  270 (407)
                      ||.+++.+++++|++.++  ++++|+||+|.+|...    ...+   +....+++++++||||.|+++|+|+||+  +++
T Consensus       157 tG~~~~~~~~~~l~~~~~--~~~livDe~y~~~~~~----~~~~---~~~~~~~~i~~~S~SK~~~~~GlR~G~~--~~~  225 (353)
T PRK05387        157 TGIALPLAEIERILAANP--DSVVVIDEAYVDFGGE----SAIP---LIDRYPNLLVVQTFSKSRSLAGLRVGFA--IGH  225 (353)
T ss_pred             CCCCCCHHHHHHHHHhCC--CcEEEEeCcccccCCc----chHH---HHhhCCCEEEEEehhHhhcchhhhceee--ecC
Confidence            999999999999987653  9999999999876421    1122   2234577999999999999999999999  454


Q ss_pred             ChhhHHHHHHHHhhhhhcc-cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          271 TEDVASRVESQLKLVIRPM-YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                       ++    +.+.+....... ..+.+.++|.++..++.+.       .+.++.+++++++++.+.+.|++.+    +.+. 
T Consensus       226 -~~----~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~-  288 (353)
T PRK05387        226 -PE----LIEALNRVKNSFNSYPLDRLAQAGAIAAIEDE-------AYFEETRAKVIATRERLVEELEALG----FEVL-  288 (353)
T ss_pred             -HH----HHHHHHHhhccCCCCCcCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CeEC-
Confidence             44    444444443322 3367788899888888764       3356777888999999999999886    5544 


Q ss_pred             CCceeEEecCC---CHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHHH
Q 015435          350 KQIGMFTFTGL---NSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       350 ~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      +.+++|.|+.+   +.+.+.+.|.++||.+...+        ||+++  +++++++++++|+++++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~--~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        289 PSKANFVFARHPSHDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG--TDEEMEALVDALKEILA  352 (353)
T ss_pred             CCcCcEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC--CHHHHHHHHHHHHHHhh
Confidence            45667778755   44555555567899885431        99987  56889999999998875

>PRK06225 aspartate aminotransferase; Provisional

Probab=100.00  E-value=9.9e-38  Score=296.76  Aligned_cols=333  Identities=16%  Similarity=0.188  Sum_probs=249.6

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      ..+.|+|+.|..   .. +.++.+.+++.+.+.  ......|.+..|.+++|+++++++ +     +++++|++  |+|+
T Consensus        27 ~~~~i~l~~~~~---~~-~~~~~~~~a~~~~~~--~~~~~~y~~~~g~~~lr~~ia~~l-~-----~~~~~v~~--~~g~   92 (380)
T PRK06225         27 DKEMIWMGQNTN---HL-GPHEEVREAMIRCIE--EGEYCKYPPPEGFPELRELILKDL-G-----LDDDEALI--TAGA   92 (380)
T ss_pred             cCCeEEccCCCC---CC-CCCHHHHHHHHHHHh--cCCCCCCCCCcchHHHHHHHHHhc-C-----CCCCcEEE--eCCH
Confidence            468999998863   22 445555555555554  233456888889999999999988 4     34579999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec-CCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD-PATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      ++++.+++.  ..+.+||+|++++|+|..+...++..|.+++.+++.+ +.++.+|++.+++.+.  ++++++++ ++|+
T Consensus        93 t~al~~~~~--~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~--~~~~~v~l-~~p~  167 (380)
T PRK06225         93 TESLYLVMR--AFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMD--ENTRLIYL-IDPL  167 (380)
T ss_pred             HHHHHHHHH--HhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcC--CCceEEEE-eCCC
Confidence            999999853  3477999999999999999999999999999998742 2246799999999887  55677777 6999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      ||||.+++.+++++|+++|++||+++|+||+|.+|..+.     .....+  ..++++++.||||.+|++|+|+||+  +
T Consensus       168 NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-----~~~~~~--~~~~~i~~~s~SK~~g~~G~RiG~i--~  238 (380)
T PRK06225        168 NPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH-----TLAAEY--APEHTVTSYSFSKIFGMAGLRIGAV--V  238 (380)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC-----Cchhhc--CCCCEEEEeechhhcCCccceeEEE--e
Confidence            999999999999999999999999999999998876431     111111  2367899999999999999999999  5


Q ss_pred             ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-c
Q 015435          269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-H  347 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~  347 (407)
                      ++ +++.+    .+..... ...+.+.++|.++...++...      ++.++.++.++++++++.+.|+++..   .. .
T Consensus       239 ~~-~~l~~----~~~~~~~-~~~~~~~~~~~~a~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~  303 (380)
T PRK06225        239 AT-PDLIE----VVKSIVI-NDLGTNVIAQEAAIAGLKVKD------EWIDRIRRTTFKNQKLIKEAVDEIEG---VFLP  303 (380)
T ss_pred             cC-HHHHH----HHHHHHh-cccCCCHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHHHHHHhCcC---Cccc
Confidence            65 44444    3433322 234677888888877776532      44566677778888888888887521   22 1


Q ss_pred             ccCCceeEEecCC-----CHHHHHHhHhhccEEEcCC-------C----eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          348 IIKQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSD-------G----RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       348 ~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~g-------g----Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ..+.++.|.|+.+     +.+.+...|.++||.+.||       |    |++++. +++++++++++|+++++++
T Consensus       304 ~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~-~~e~l~~~~~~l~~~~~~~  377 (380)
T PRK06225        304 VYPSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSI-PREQVEVFCEEFPDVVETL  377 (380)
T ss_pred             cCCCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence            2344566667643     4455555555789999885       2    999986 7899999999999998653

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-38  Score=277.57  Aligned_cols=314  Identities=18%  Similarity=0.230  Sum_probs=259.4

Q ss_pred             ccCCCCCCcHHHHHHHHHHHhCCC--CCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-h
Q 015435           69 KEYLPIVGLVDFNKLSAKLILGAD--SPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-L  145 (407)
Q Consensus        69 ~~y~~~~g~~~l~~~~a~~~~~~~--~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~  145 (407)
                      ..|.+-.|++.+|+++|+++....  ....+|+++++  |+|+|.+++++.  ..+.+|||.-++|.|.|+++...++ +
T Consensus       115 a~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv--~~G~T~ane~l~--fcLadpgdafLvPtPyY~gfdrdl~~r  190 (471)
T KOG0256|consen  115 AMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVV--TNGATSANETLM--FCLADPGDAFLVPTPYYPGFDRDLRWR  190 (471)
T ss_pred             hhcccccCchHHHHHHHHHHHHHhCCCCccCccceEE--ecccchhhHHHH--HHhcCCCceeeecCCCCCcccccceec
Confidence            456666799999999999993333  44567899999  999999999994  5557899999999999999988888 6


Q ss_pred             cCceeeEEEeecCCCCCcChhhHHHHHHcC----CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc
Q 015435          146 AGLSVKTYRYYDPATRGLNFQGLLEDLRAA----PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ  221 (407)
Q Consensus       146 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~----~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~  221 (407)
                      -|+++++|.+...+++.++++++++++.+.    .+-+.+++ .||+||.|++++++++..++++|.++++.+|+||+|+
T Consensus       191 Tgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvli-tNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya  269 (471)
T KOG0256|consen  191 TGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLI-TNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYA  269 (471)
T ss_pred             cCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEE-eCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhc
Confidence            799999999987778899999999988653    23466666 8999999999999999999999999999999999999


Q ss_pred             cccCCCCCchhHHHHHHHH----cCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhH
Q 015435          222 GFASGSLDADAQSVRMFVA----DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHG  297 (407)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (407)
                      +-+++..  +..++..+..    ..+.+.++.|+||-+|+||+|+|.+  .+.|+++...    ..+...  +...+...
T Consensus       270 ~sVF~~~--~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGvi--YS~ne~Vvsa----A~kmss--f~~vSs~t  339 (471)
T KOG0256|consen  270 GSVFDKS--EFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVI--YSNNEDVVSA----ATKMSS--FGLVSSQT  339 (471)
T ss_pred             ccccCcc--CceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEE--EecChHHHHH----HHHHhh--ccCCcHHH
Confidence            9999754  4555544432    3468899999999999999999999  5888765443    333332  23778889


Q ss_pred             HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC---------CHH--HHH
Q 015435          298 ASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL---------NSE--QVA  366 (407)
Q Consensus       298 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~  366 (407)
                      |..+..+|.|..+.+   .++.+.++|++.+..++.+.|+++|    +.+...++|+|.|+++         ..|  ...
T Consensus       340 Q~~la~LLSD~~f~~---~yl~en~~Rl~~rh~~~~~gLk~lg----I~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~  412 (471)
T KOG0256|consen  340 QYLLASLLSDEEFTR---EYLRENNKRLRIRHRYIVEGLKALG----IPCLKSNAGLFCWVDLRKLLTSLTFEGELELWE  412 (471)
T ss_pred             HHHHHHHhchHHHHH---HHHHHHHHHHHHHHHHHHhhHHhcC----CceeecCCeeEEEEEhHHhcCcCChHHHHHHHH
Confidence            999999999975433   3577888999999999999999999    7889999999999976         223  355


Q ss_pred             HhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHH
Q 015435          367 FMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       367 ~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      .++++.++.++||.          |++|+...++.++.+++||++++.
T Consensus       413 ~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  413 RILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             HHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence            77787799999984          999998666777779999999875

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=4.6e-38  Score=296.56  Aligned_cols=321  Identities=20%  Similarity=0.159  Sum_probs=245.6

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      ++++|+|+.|.+    ..+.|+.+++++.+.+.  ......|++ .|.+++|+++++++ +..    ..++|++  |+|+
T Consensus        25 ~~~~i~l~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~Y~~-~~~~~lr~~ia~~~-~~~----~~~~I~~--t~G~   90 (356)
T PRK04870         25 ATGMVKLDAMEN----PYRLPAELRAELGERLA--EVALNRYPD-PRAAALKAALRAAM-GVP----AGADVLL--GNGS   90 (356)
T ss_pred             CCCceeCcCCCC----CCCCCHHHHHHHHHHhh--ccccccCCC-CCHHHHHHHHHHHh-CcC----CCCcEEE--cCCH
Confidence            468999999974    33556677777766664  233567865 68899999999998 431    1258999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++.++..  ..+.+||+|++++|+|..+...++..|++++.++++  +++++|++++++.+.. .+++++++ ++|||
T Consensus        91 ~~~i~~~~~--~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~--~~~~~d~~~l~~~~~~-~~~~~v~l-~~p~N  164 (356)
T PRK04870         91 DELIQLLAL--ACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT--ADFTLDLPAMLAAIAE-HRPALVFL-AYPNN  164 (356)
T ss_pred             HHHHHHHHH--HhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhhc-CCCCEEEE-cCCCC
Confidence            999999853  336899999999999999999999999999999983  3578999999998863 25677777 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||.+++.+++++|+++|   ++++|+||+|.+|...+    ..+  . ....+++++++|||| ++++|+|+||+  ++
T Consensus       165 PtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~----~~~--~-~~~~~~vi~~~S~SK-~~~~GlRiG~~--i~  231 (356)
T PRK04870        165 PTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGDS----WLP--R-LARFPNLLVMRTVSK-LGLAGLRLGYL--AG  231 (356)
T ss_pred             CCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcCcc----hHH--H-HhhCCCEEEEecchh-hhhHHHhhhhh--hC
Confidence            999999999999999998   67899999999886531    111  1 233468999999999 89999999999  45


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      + ++    +.+.+.....  .++.+.++|.++..++++.       +.+++.+++++++++.+.+.|++++.   +.+. 
T Consensus       232 ~-~~----~i~~~~~~~~--~~~~~~~~q~~a~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~-  293 (356)
T PRK04870        232 H-PA----WIAELDKVRP--PYNVNVLTQATALFALEHV-------DVLDAQAAQLRAERTRLAAALAALPG---VTVF-  293 (356)
T ss_pred             C-HH----HHHHHHHccC--CCcCCHHHHHHHHHHHhCH-------HHHHHHHHHHHHHHHHHHHHHHhCCC---cEEC-
Confidence            5 44    4444444332  2367778888888887754       33567778888999999999988732   5444 


Q ss_pred             CCceeEEecCC-CHHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHH
Q 015435          350 KQIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       350 ~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +.+++|.|+.+ +.+.+.+.|+++||.+.++.          ||+++  +.+++++++++|++++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~  356 (356)
T PRK04870        294 PSAANFILVRVPDAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG--TPEENAQFLAALKAAL  356 (356)
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC--CHHHHHHHHHHHHHhC
Confidence            45667888877 44556677788999998751          99988  5688899999888753

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.6e-37  Score=287.89  Aligned_cols=312  Identities=15%  Similarity=0.132  Sum_probs=232.4

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      .+.++|+|+.|++   .. +.|+.+++++.+.+.  ......|+ ..|.+++|+++++++ +..+  +++++|++  |+|
T Consensus        17 ~~~~~i~l~~~~~---~~-~~p~~~~~~~~~~~~--~~~~~~Y~-~~~~~~Lr~aia~~~-~~~~--~~~~~i~i--t~G   84 (335)
T PRK14808         17 EKRDRTYLALNEN---PF-PFPEDLVDEVFRRLN--SDTLRIYY-DSPDEELIEKILSYL-DTDF--LSKNNVSV--GNG   84 (335)
T ss_pred             CCCceeEecCCCC---CC-CCCHHHHHHHHHHhh--hhhhhcCC-CCChHHHHHHHHHHh-CCCC--CCcceEEE--cCC
Confidence            3469999999984   33 667677777776664  22334464 458999999999999 4333  56799999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      +++++.++..   .+   |.|++++|+|+.|...++.+|.+++.+|++ + ++.++...    +   ..++++++ ++||
T Consensus        85 a~~~i~~~~~---~~---d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~-~-~~~~~~~~----~---~~~~~i~i-~nP~  148 (335)
T PRK14808         85 ADEIIYVMML---MF---DRSVFFPPTYSCYRIFAKAVGAKFLEVPLT-K-DLRIPEVN----V---GEGDVVFI-PNPN  148 (335)
T ss_pred             HHHHHHHHHH---Hh---CcEEECCCCHHHHHHHHHHcCCeEEEecCC-C-cCCCChhH----c---cCCCEEEE-eCCC
Confidence            9999999842   23   789999999999999999999999999983 2 23333221    2   23566665 9999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      ||||.+++.+++++|+    +++++||+||+|.+|...    ...+   .....+++++++||||.|+++|+|+||+  +
T Consensus       149 NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~~~----~~~~---~~~~~~~vi~~~S~SK~~~l~GlRvG~~--v  215 (335)
T PRK14808        149 NPTGHVFEREEIERIL----KTGAFVALDEAYYEFHGE----SYVD---LLKKYENLAVIRTFSKAFSLAAQRIGYV--V  215 (335)
T ss_pred             CCCCCCcCHHHHHHHH----hcCCEEEEECchhhhcCC----chHH---HHHhCCCEEEEEechhhccCcccceEEE--E
Confidence            9999999999999885    589999999999988521    1222   2234568999999999999999999999  5


Q ss_pred             ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 015435          269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI  348 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  348 (407)
                      ++     +.+.+.+.....  .++.+.++|.++..++++.       ++..+.++.++++++.+.+.|++.|    +.+.
T Consensus       216 ~~-----~~~~~~l~~~~~--~~~~~~~~q~a~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~  277 (335)
T PRK14808        216 SS-----EKFIDAYNRVRL--PFNVSYVSQMFAKVALDHR-------EIFEERTKFIVEERERMKSALREMG----YRIT  277 (335)
T ss_pred             eC-----HHHHHHHHHhcC--CCCCCHHHHHHHHHHHhCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CEEC
Confidence            66     345555544442  3467788898888888754       3345566677788899999999887    6766


Q ss_pred             cCCceeEEecCC---CHHHHHHhHhhccEEEcCCC---eEEecCCCCCChhHHHHHHHHH
Q 015435          349 IKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSDG---RISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       349 ~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~gg---Ris~~~~~~e~i~~~~~~l~~~  402 (407)
                      .+.|+ |.|+.+   +.+.+.+.|.++||.+....   ||+++  +.++.+++++.|+++
T Consensus       278 ~~~g~-f~~~~l~~~~~~~~~~~l~~~Gi~V~~~~~~~Risi~--~~~~~~~~~~~l~~~  334 (335)
T PRK14808        278 DSRGN-FVFIFMEKEEKERLLEHLRAKNIAVRSFREGVRITIG--KREENDMILKELEVF  334 (335)
T ss_pred             CCCCe-EEEEeCCCccHHHHHHHHHHCCeEEEECCCCeEEecC--CHHHHHHHHHHHHhh
Confidence            77665 557654   34556666777999998743   99988  468888888888753

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=6.1e-37  Score=287.98  Aligned_cols=319  Identities=18%  Similarity=0.202  Sum_probs=237.2

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      +..++|+.|.+   .. +.|+.+++++.+.+.  ......|++ .+.+++|+++++++ +     +++++|++  |+|++
T Consensus        22 ~~~~~l~~~~~---~~-~~p~~~~~a~~~~~~--~~~~~~y~~-~~~~~lr~~ia~~~-~-----~~~~~i~i--t~G~~   86 (351)
T PRK14807         22 PYKYKMDANET---PF-ELPEEVIKNIQEIVK--SSQVNIYPD-PTAEKLREELARYC-S-----VVPTNIFV--GNGSD   86 (351)
T ss_pred             CceeEccCCCC---CC-CCCHHHHHHHHHHhh--cCcccCCCC-ccHHHHHHHHHHHh-C-----CCcccEEE--ecCHH
Confidence            46799999975   32 556677777665554  234566754 45789999999997 3     34589999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP  190 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP  190 (407)
                      +++.+++.  ..+.+||+|++++|+|..+...++..|.+++.++++  .++++|++++++.+.. .+++++++ ++||||
T Consensus        87 ~~l~~~~~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~-~~~k~v~l-~~p~NP  160 (351)
T PRK14807         87 EIIHLIML--AFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK--EDYTYDVGSFIKVIEK-YQPKLVFL-CNPNNP  160 (351)
T ss_pred             HHHHHHHH--HhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHHhhc-cCCCEEEE-eCCCCC
Confidence            99998853  347899999999999999999999999999999983  3478999999998872 25677777 799999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435          191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK  270 (407)
Q Consensus       191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~  270 (407)
                      ||.+++.+++.+|   |++++.++|+||+|.++. +.   ...+   .....+++++++||||.|+++|+|+||+  +++
T Consensus       161 tG~~~~~~~l~~l---~~~~~~~~ivDe~y~~~~-~~---~~~~---~~~~~~~vi~~~S~SK~~~~~GlRiG~~--v~~  228 (351)
T PRK14807        161 TGSVIEREDIIKI---IEKSRGIVVVDEAYFEFY-GN---TIVD---VINEFENLIVLRTLSKAFGLAGLRVGYA--VAN  228 (351)
T ss_pred             CCCCCCHHHHHHH---HHhCCCEEEEeCcchhhc-cc---chHH---HhhhCCCEEEEecchHhcccchhceeee--ecC
Confidence            9999998887777   556677899999998874 21   1222   2234578999999999999999999999  554


Q ss_pred             ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 015435          271 TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  350 (407)
                       ++    +.+.+......  .+.+.+.|.++..++++.        ++++..+.++++++.+.+.|++.+.   +.+.+ 
T Consensus       229 -~~----~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~--------~~~~~~~~~~~~r~~l~~~l~~~~g---~~~~~-  289 (351)
T PRK14807        229 -EN----ILKYLNLVKSP--YNINSLSQVIALKVLRTG--------VLKERVNYILNERERLIKELSKIPG---IKVYP-  289 (351)
T ss_pred             -HH----HHHHHHHccCC--CCcCHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHhCCC---cEECc-
Confidence             44    44444444332  356788899998888743        2344555677888889898877532   55544 


Q ss_pred             CceeEEecCC-CHHHHHHhHhhccEEEcCCC---------eEEecCCCCCChhHHHHHHHHHH
Q 015435          351 QIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG---------RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       351 ~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg---------Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      .+++|.|+.+ +.+.+.+.|.++||.+.+++         ||+++  +.++.+++++.|++++
T Consensus       290 ~~~~~~~i~~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        290 SKTNFILVKFKDADYVYQGLLERGILVRDFSKVEGLEGALRITVS--SCEANDYLINGLKELL  350 (351)
T ss_pred             CCccEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC--CHHHHHHHHHHHHHhh
Confidence            4567888876 44556666666899986631         99988  4577888888887753

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=6.6e-37  Score=290.08  Aligned_cols=324  Identities=16%  Similarity=0.172  Sum_probs=246.9

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      +..+++||++|.+  +.+ + ++.+.+++.+.+.    ....|++. +..++|+++++++ +     +++++|++  |+|
T Consensus        30 ~~~~~i~l~~~~~--~~~-~-~~~~~~a~~~~~~----~~~~y~~~-~~~~lr~~ia~~~-~-----~~~~~i~~--t~G   92 (367)
T PRK02731         30 GIADIIKLASNEN--PLG-P-SPKAIEAIRAAAD----ELHRYPDG-SGFELKAALAEKF-G-----VDPERIIL--GNG   92 (367)
T ss_pred             CCCceEEecCCCC--CCC-C-CHHHHHHHHHHHH----hhcCCCCC-cHHHHHHHHHHHh-C-----cCHHHEEE--cCC
Confidence            4578999999974  233 3 4445555554443    24567554 4579999999988 4     23589999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      +++++.++.  ...+.+||+|++++|+|..+...++..|.+++.++.   .++++|++.+++.+.  ++++++++ ++||
T Consensus        93 ~~~~l~~~~--~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~--~~~~~v~l-~~p~  164 (367)
T PRK02731         93 SDEILELLA--RAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA---KDYGHDLDAMLAAVT--PRTRLVFI-ANPN  164 (367)
T ss_pred             HHHHHHHHH--HHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc---cCCCCCHHHHHHHhC--CCCcEEEE-eCCC
Confidence            999998874  334679999999999999998888899999999987   246799999999887  56677777 8999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      ||||.+++.+++.+|++.|+ +|+++|+||+|.++.+.+..  ..++ .+....+++++++||||.||++|+|+||+  +
T Consensus       165 nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~--~~~~-~~~~~~~~~i~~~S~SK~~g~~G~RiG~l--~  238 (367)
T PRK02731        165 NPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDY--EDGL-ELVAKFPNVVVTRTFSKAYGLAGLRVGYG--I  238 (367)
T ss_pred             CCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCc--ccHH-HHHhhcCCEEEEeeehHhhcCcccceeee--e
Confidence            99999999999999988875 69999999999988875421  2222 22344578999999999999999999999  5


Q ss_pred             ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 015435          269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI  348 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  348 (407)
                      ++ ++    +.+.+......  ++.+.++|.++..++++.       ++.++.++.++++++.+.+.|++.|    +.+.
T Consensus       239 ~~-~~----~~~~l~~~~~~--~~~~~~~~~~a~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~  300 (367)
T PRK02731        239 AP-PE----IIDALNRVRQP--FNVNSLALAAAVAALDDD-------AFVEKSRALNAEGMAWLTEFLAELG----LEYI  300 (367)
T ss_pred             CC-HH----HHHHHHHccCC--CCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CccC
Confidence            65 44    44444444332  356788899999988764       4466778888899999999999886    5554


Q ss_pred             cCCceeEEecCC----CHHHHHHhHhhccEEEcCC------C--eEEecCCCCCChhHHHHHHHHHHH
Q 015435          349 IKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSD------G--RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       349 ~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g------g--Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      + .+|+|.|+.+    +.+.+.+.|.++||.+.++      +  ||+++  +.++++++++.|+++++
T Consensus       301 ~-~~g~~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~--~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        301 P-SVGNFILVDFDDGKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG--TEEENRRFLAALKEFLA  365 (367)
T ss_pred             C-CCceEEEEECCCCCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC--CHHHHHHHHHHHHHHHh
Confidence            4 4567888765    4455555556689999885      2  99987  56889999999998875

>PRK07908 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-36  Score=284.95  Aligned_cols=319  Identities=19%  Similarity=0.169  Sum_probs=239.2

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...+++++||+.|.+    ..+.|..+.+++.+.+.    ...+|++..|.+++|+++++++ +     +++++|++  |
T Consensus        18 ~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~aia~~~-~-----~~~~~I~i--t   81 (349)
T PRK07908         18 QDAGPGLLDFAVNVR----HDTPPEWLRERLAARLG----DLAAYPSTEDERRARAAVAARH-G-----RTPDEVLL--L   81 (349)
T ss_pred             ccCCCCeEEecCCCC----CCCCCHHHHHHHHHHhh----HhhcCCCccchHHHHHHHHHHh-C-----cChhhEEE--C
Confidence            344689999999973    22445555666555553    2456977889999999999998 4     34689999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecC
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC  186 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~  186 (407)
                      +|+++++.+++.    +.+ +.++++.|+|..+...++..|.+++.++++ + ++++|++.+.      ++++++++ ++
T Consensus        82 ~Ga~~al~~~~~----l~~-~~viv~~P~y~~~~~~~~~~G~~i~~v~~~-~-~~~~d~~~l~------~~~~~i~l-~n  147 (349)
T PRK07908         82 AGAAEGFALLAR----LRP-RRAAVVHPSFTEPEAALRAAGIPVHRVVLD-P-PFRLDPAAVP------DDADLVVI-GN  147 (349)
T ss_pred             CCHHHHHHHHHh----cCC-CeEEEeCCCChHHHHHHHHcCCEEEeeccC-c-ccCcChhHhc------cCCCEEEE-cC
Confidence            999999998842    456 567788999999999999999999999983 3 3678887542      34667666 99


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      ||||||++++.+++.++   |+ ++.++|+||+|.++..+.    ..++..  ...+++++++||||.|+++|+|+||+ 
T Consensus       148 p~NPTG~~~~~~~l~~l---~~-~~~~iIvDe~y~~~~~~~----~~~l~~--~~~~~~i~i~S~SK~~~l~GlRiG~~-  216 (349)
T PRK07908        148 PTNPTSVLHPAEQLLAL---RR-PGRILVVDEAFADAVPGE----PESLAG--DDLPGVLVLRSLTKTWSLAGLRVGYA-  216 (349)
T ss_pred             CCCCCCCCcCHHHHHHH---Hh-cCCEEEEECcchhhccCC----cccccc--ccCCCEEEEeecccccCCccceeeee-
Confidence            99999999998766555   65 477888999999886431    122211  12357999999999999999999999 


Q ss_pred             EeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 015435          267 IVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS  346 (407)
Q Consensus       267 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  346 (407)
                       +++ ++    +.+.+......  ++.+.+.+.++..++.+..     .+++++.+++++++++++.+.|++.+    +.
T Consensus       217 -~~~-~~----~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~r~~l~~~L~~~~----~~  279 (349)
T PRK07908        217 -LGA-PD----VLARLTRGRAH--WPVGTLQLEAIAACCAPRA-----VAEAAADAARLAADRAEMVAGLRAVG----AR  279 (349)
T ss_pred             -ecC-HH----HHHHHHhcCCC--CCccHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHhCC----cE
Confidence             555 44    44444443332  3455666777666666321     24567788999999999999998875    77


Q ss_pred             cccCCceeEEecCCC-HHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          347 HIIKQIGMFTFTGLN-SEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +..|.+++|.|+.+. .+.+...|+++||.+.+|.          ||+++  +++++++++++|++++..
T Consensus       280 ~~~p~~g~~~~~~~~~~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~--~~~~~~~l~~al~~~~~~  347 (349)
T PRK07908        280 VVDPAAAPFVLVRVPDAELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR--PRAEVPVLVQALAEILKA  347 (349)
T ss_pred             eccCCCceEEEEECCcHHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC--CCccHHHHHHHHHHHHhc
Confidence            777788999999774 4566777788999998751          99996  678999999999988753

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5.5e-37  Score=286.32  Aligned_cols=313  Identities=17%  Similarity=0.191  Sum_probs=233.4

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      +.+.|||+.|.+   .. +.++.+++++.+.+.  ......| |..|.+++|+++++++ +     +++++|++  |+|+
T Consensus        17 ~~~~i~l~~~~~---~~-~~~~~~~~~~~~~~~--~~~~~~Y-~~~g~~~lr~~ia~~~-~-----~~~~~I~~--t~G~   81 (337)
T PRK03967         17 GNYRIWLDKNEN---PF-DLPEELKEEIFEELK--RVPFNRY-PHITSDPLREAIAEFY-G-----LDAENIAV--GNGS   81 (337)
T ss_pred             CCceEEecCCCC---CC-CCCHHHHHHHHHHhh--cCccccC-CCCCHHHHHHHHHHHh-C-----cCcceEEE--cCCH
Confidence            357899999974   22 455667777766664  2235568 4579999999999999 4     45689999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++..+.   ..+ +||+|+++.|+|..+...++..|.+++.++++  .++++|++.+++.+   ++++++++ ++|||
T Consensus        82 ~~~l~~~~---~~~-~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~---~~~~~v~~-~~P~N  151 (337)
T PRK03967         82 DELISYLV---KLF-EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLK--EDFTIDGERIAEKA---KNASAVFI-CSPNN  151 (337)
T ss_pred             HHHHHHHH---HHh-CCCeEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCcCHHHHHHhc---cCCCEEEE-eCCCC
Confidence            99998773   223 79999999999999988889999999999983  34789999998764   35667776 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||.+++.+++.++   + ++++++|+||+|.+|...    ...   ......+++++++||||.|+++|+|+||+  ++
T Consensus       152 PtG~~~~~~~l~~i---~-~~~~~ii~De~y~~~~~~----~~~---~~~~~~~~vi~l~S~SK~~~l~GlRiG~i--v~  218 (337)
T PRK03967        152 PTGNLQPEEEILKV---L-ETGKPVVLDEAYAEFSGK----SLI---GLIDEYPNLILLRTFSKAFGLAGIRAGYA--IA  218 (337)
T ss_pred             CCCCCCCHHHHHHH---H-hcCCEEEEECchhhhccc----chH---HHHhhCCCEEEEecchHhhcchhhhheee--ec
Confidence            99999998877776   4 479999999999988632    111   12334568999999999999999999999  56


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      + ++    +.+.+......  .+.+.++|.++..++++.       ++..+.++.+.++++.+.+.|.+..        .
T Consensus       219 ~-~~----~i~~~~~~~~~--~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~--------~  276 (337)
T PRK03967        219 N-EE----IIDALYRIKPP--FSLNILTMKIVRLALDHY-------DLIEERIDYIIKERERVRRELGEYA--------Y  276 (337)
T ss_pred             C-HH----HHHHHHhhcCC--CCCCHHHHHHHHHHHhCH-------HHHHHHHHHHHHHHHHHHHHhccCc--------C
Confidence            5 44    44445444433  367889999999998764       2344444556667777888775432        3


Q ss_pred             CCceeEEecCCCHHHHHHhHhhccEEEcCCC-------eEEecCCCCCChhHHHHHHHHHHHhhC
Q 015435          350 KQIGMFTFTGLNSEQVAFMTKEYHIYMTSDG-------RISMAGLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~l~~~gi~~~~gg-------Ris~~~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      +.+++|.|+.++  .. +.|.++||.+.+++       ||+++  +.++.++++++|..+.+..|
T Consensus       277 ~~~~~~~~~~~~--~~-~~l~~~gi~v~~~~~~~~~~~Ri~~~--~~~~~~~l~~~l~~~~~~~~  336 (337)
T PRK03967        277 PSDANFLLLKLD--AY-DYLLENGIVVRKLSGRLEGHIRVTVG--KREENDEFIKALKEIKEGYG  336 (337)
T ss_pred             CCCCcEEEEhHH--HH-HHHHHCCEEEEeCCCCCCCeEEEecC--CHHHHHHHHHHHHHHHHhcC
Confidence            567889998763  33 44445799997642       99888  45778899999988876554

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=5.6e-37  Score=285.95  Aligned_cols=305  Identities=17%  Similarity=0.173  Sum_probs=227.9

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      .++|||+.++.  +.| |.+.....   ..       ...| |... .+||+++++++ +..    ++++|++  |+|++
T Consensus        24 ~~~i~ls~Nen--p~~-~~~~~~~~---~~-------~~~Y-p~~~-~~L~~~ia~~~-~~~----~~~~I~i--~~Gs~   81 (339)
T PRK06959         24 DAWLDLSTGIN--PHG-YPVPPVPA---DA-------WRRL-PEDD-DGLAACAARYY-GAP----DAAHVLP--VAGSQ   81 (339)
T ss_pred             hhhceeccCCC--CCC-CCCCCCCH---HH-------HHhC-CCch-HHHHHHHHHHh-CCC----CcccEEE--CcCHH
Confidence            57899998873  333 22122211   11       2337 4444 89999999998 532    2479999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP  190 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP  190 (407)
                      +++.++.   ..+.+|| |++++|+|..|...++..|.+++.++.+ +       +.+.      ...+++++ ++||||
T Consensus        82 e~i~~l~---~~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~-~-------~~~~------~~~~~v~l-~nPnNP  142 (339)
T PRK06959         82 AAIRALP---ALLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEA-A-------DTLP------AALTHLIV-VNPNNP  142 (339)
T ss_pred             HHHHHHH---HhcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeeccc-c-------hhcc------ccCCEEEE-eCCCCC
Confidence            9998663   3456776 8899999999999999999999988762 1       2221      12345565 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435          191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK  270 (407)
Q Consensus       191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~  270 (407)
                      ||++++.+++++|++.|.+++.++|+||+|.+|...      .++..+. ..+++++++||||.||++|+|+||+  +++
T Consensus       143 TG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~------~s~~~~~-~~~~vi~l~SfSK~~gl~GlRiGy~--v~~  213 (339)
T PRK06959        143 TAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA------ASLAAHT-DRPGLVVLRSVGKFFGLAGVRAGFV--LAA  213 (339)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc------ccchhcc-CCCCEEEEecChhhcCCcchheEEE--ecC
Confidence            999999999999999999999999999999988642      1222222 2467999999999999999999999  565


Q ss_pred             ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 015435          271 TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  350 (407)
                       +    .+.+.+......  ++.+.++|.++..+|++.       .+.++.+++++++++.+.+.|++.|    +.+.  
T Consensus       214 -~----~li~~l~~~~~~--~~vs~~~q~a~~~~L~~~-------~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~--  273 (339)
T PRK06959        214 -P----ALLAALRDALGA--WTVSGPARHAVRAAFADA-------AWQAAMRERLAADGARLAALLRAHG----FAVH--  273 (339)
T ss_pred             -H----HHHHHHHHhcCC--CCCcHHHHHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CCcc--
Confidence             4    455555555433  356788999999999875       3456778999999999999999987    4443  


Q ss_pred             CceeEEecCC-CHHHHHHhHhhccEEEcCCC-----eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          351 QIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG-----RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       351 ~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg-----Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+++|.|+++ +...+...|.++||.+...+     ||+++. +++++++++++|+++++.+
T Consensus       274 ~~~~f~~~~~~~~~~l~~~l~~~GI~vr~~~~~~~lRisi~~-~~~e~~~l~~al~~~~~~~  334 (339)
T PRK06959        274 ATPLFSWTDDPRAAALHAALARRGIWTRYFAPPPSVRFGLPA-DEAEWQRLEDALAECVPTL  334 (339)
T ss_pred             CcceEEEEeCCCHHHHHHHHHhCCeEEEECCCCCeEEEECCC-CHHHHHHHHHHHHHHHHHH
Confidence            2568888876 44455666667899998653     999864 6789999999999887654

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1e-36  Score=284.07  Aligned_cols=304  Identities=14%  Similarity=0.142  Sum_probs=222.1

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCccc
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTG  111 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~  111 (407)
                      ++|||+.++-      |.+         ..    .....| |.....+||+++++++ +.     ++++|++  |+|+++
T Consensus        17 ~~i~l~~Nen------p~~---------~~----~~~~~Y-p~~~~~~lr~~ia~~~-~~-----~~~~I~i--t~Gs~~   68 (332)
T PRK06425         17 RIIDFSANIN------DFM---------DI----GDISIY-PEISYTDIEDQIKIYT-QG-----LKIKVLI--GPGLTH   68 (332)
T ss_pred             CEEEeccccC------CCc---------Ch----hhcccC-cCcCHHHHHHHHHHHh-CC-----CcceEEE--CCCHHH
Confidence            7899997762      432         01    123447 6566899999999998 53     3578999  999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCC
Q 015435          112 SLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPT  191 (407)
Q Consensus       112 a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPt  191 (407)
                      ++.++..   .+.+| .|++++|+|..|...++..|++++.+|++ +  .+.|.+.+++     .+++++++ ++|||||
T Consensus        69 ~l~~~~~---~~~~~-~vv~~~P~y~~y~~~~~~~G~~v~~vp~~-~--~~~~~~~l~~-----~~~k~v~l-~nP~NPT  135 (332)
T PRK06425         69 FIYRLLS---YINVG-NIIIVEPNFNEYKGYAFTHGIRISALPFN-L--INNNPEILNN-----YNFDLIFI-VSPDNPL  135 (332)
T ss_pred             HHHHHHH---HhCCC-cEEEeCCChHHHHHHHHHcCCeEEEEeCC-c--ccCcHHHHhh-----cCCCEEEE-eCCCCCc
Confidence            9999852   35565 57777999999999999999999999983 2  3455544432     35677777 7999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecC
Q 015435          192 GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKT  271 (407)
Q Consensus       192 G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~  271 (407)
                      |.+++.+++++|+++|+++|++||+||+|.+|.+++.    .+...+....+++++++||||.|+++|+|+||+  +++ 
T Consensus       136 G~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~----~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~--v~~-  208 (332)
T PRK06425        136 GNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA----EEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYI--ATD-  208 (332)
T ss_pred             CCccCHHHHHHHHHHHHHcCCEEEEecchhccccccc----hhHHHHhccCCCEEEEeecHHhcCCchhhheee--ecC-
Confidence            9999999999999999999999999999999987531    223333344578999999999999999999999  566 


Q ss_pred             hhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC
Q 015435          272 EDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ  351 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  351 (407)
                          +.+.+.+......+  +.+..++    .++....    +..+.++.++.++++++.+.+.|++.+    +.+..+.
T Consensus       209 ----~~li~~l~~~~~~~--~~~~~~~----~~l~~~~----~~~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~~~~  270 (332)
T PRK06425        209 ----DYNMKISRKITEPW--SVCDPAI----DFIRSID----LDYVAKHSLDIMENERSYLINNLEAMG----FRAAGDP  270 (332)
T ss_pred             ----HHHHHHHHHcCCCC--ccCHHHH----HHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHCC----CEECCCC
Confidence                34555454433222  2233222    2232221    124456778899999999999999887    6655444


Q ss_pred             ceeEEecCC-CHHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHH
Q 015435          352 IGMFTFTGL-NSEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       352 ~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +|.|.|+.+ +.+.+.+.|.++||.+.|+.          ||+++  +++++++++++|++++
T Consensus       271 ~g~f~~~~~~~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~  331 (332)
T PRK06425        271 SANFITFMIPDAHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIR--RRSFNIKLVNALRNFL  331 (332)
T ss_pred             CceEEEEEcCCHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence            566777766 44444444445799998751          99998  5688999999998765

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.2e-37  Score=289.57  Aligned_cols=290  Identities=20%  Similarity=0.236  Sum_probs=222.8

Q ss_pred             cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCC-CeEEecCCCCCChHHHHhhc
Q 015435           68 VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ-LTIYIPQPTWGNHPKVFTLA  146 (407)
Q Consensus        68 ~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~g-d~Vi~~~p~y~~~~~~~~~~  146 (407)
                      ...| |.....++++.+++++ +     +++++|++  |+|+++++.+++  ...+.+| |+|++++|+|..|...++..
T Consensus        51 ~~~Y-p~~~~~~l~~~~a~~~-g-----~~~~~I~~--~~Gs~e~i~~~~--~~~~~~g~~~vli~~P~y~~y~~~~~~~  119 (351)
T PRK01688         51 LNRY-PECQPKAVIENYAAYA-G-----VKPEQVLV--SRGADEGIELLI--RAFCEPGKDAILYCPPTYGMYSVSAETI  119 (351)
T ss_pred             cccC-CCCChHHHHHHHHHHh-C-----CCHHHEEE--cCCHHHHHHHHH--HHhcCCCCCEEEEcCCCHHHHHHHHHHc
Confidence            4446 5555689999999987 5     35689999  999999999995  3346676 89999999999999999999


Q ss_pred             CceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435          147 GLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASG  226 (407)
Q Consensus       147 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~  226 (407)
                      |++++.+|++  .++.+|++++++.+.   +++++++ +|||||||++++.+++++|++.|++ +.++|+||+|.+|...
T Consensus       120 G~~~~~v~~~--~~~~~d~~~l~~~~~---~~~lv~l-~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~  192 (351)
T PRK01688        120 GVEIRTVPTL--DNWQLDLPAIADNLD---GVKVVYV-CSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQ  192 (351)
T ss_pred             CCEEEEeecC--CCCCCCHHHHHHhcc---CCcEEEE-eCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCC
Confidence            9999999983  347899999998763   5677777 8999999999999999999999986 6789999999998742


Q ss_pred             CCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhc
Q 015435          227 SLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK  306 (407)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  306 (407)
                      .      +...+....+++++++||||.||++|+|+||+  +++ ++    +.+.+......  ++.+.+.+.++..+|.
T Consensus       193 ~------s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~--i~~-~~----~i~~l~~~~~~--~~v~~~~~~~a~~~L~  257 (351)
T PRK01688        193 A------SLAGWLAEYPHLVILRTLSKAFALAGLRCGFT--LAN-EE----VINLLLKVIAP--YPLSTPVADIAAQALS  257 (351)
T ss_pred             C------ChHHHHhhCCCEEEEecchHhhcCHHHHHhHH--hCC-HH----HHHHHHhccCC--CCCCHHHHHHHHHHHh
Confidence            1      12223344578999999999999999999999  555 44    44444444433  3567777888888887


Q ss_pred             ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-CHHHHHHhHhhccEEEcCC----C-
Q 015435          307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-NSEQVAFMTKEYHIYMTSD----G-  380 (407)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~g----g-  380 (407)
                      +..     .+++++.++.+.++++++.+.|++++.   +....|.++.|.|+.+ +.+.+.+.|.++||.+.++    | 
T Consensus       258 ~~~-----~~~~~~~~~~~~~~r~~l~~~L~~~~~---~~~~~ps~~nfi~~~~~~~~~l~~~L~~~gi~vr~~~~~~~~  329 (351)
T PRK01688        258 PQG-----IAAMRERVAEINANRQWLIAALKEIPC---VEQVFDSETNYILARFTASSAVFKSLWDQGIILRDQNKQPGL  329 (351)
T ss_pred             cch-----HHHHHHHHHHHHHHHHHHHHHHHhCCC---CCeECCCCCcEEEEEcCCHHHHHHHHHHCCeEEEECCCcCCC
Confidence            542     144667778888899999999988742   4434455677888866 3455555555689999753    2 


Q ss_pred             ----eEEecCCCCCChhHHHHHHH
Q 015435          381 ----RISMAGLSSKTVPHLTDAIH  400 (407)
Q Consensus       381 ----Ris~~~~~~e~i~~~~~~l~  400 (407)
                          ||+++  +++++++++++|+
T Consensus       330 ~~~iRis~~--~~~e~~~l~~al~  351 (351)
T PRK01688        330 SNCLRITIG--TREECQRVIDALR  351 (351)
T ss_pred             CCeEEEeCC--CHHHHHHHHHhhC
Confidence                99988  5688888888763

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=100.00  E-value=1.4e-36  Score=282.87  Aligned_cols=303  Identities=15%  Similarity=0.145  Sum_probs=224.9

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      .++|||+.++.  +.+ +.+.....   ..       ...|+.  +..+||+++++++ +.       ++|++  |+|++
T Consensus        20 ~~~i~l~~ne~--p~~-~~~~~~~~---~~-------~~~yp~--~~~~Lr~~ia~~~-~~-------~~I~i--t~Gs~   74 (330)
T PRK05664         20 ADWLDLSTGIA--PWP-WPVPAIPA---DA-------WARLPE--TDDGLEAAARAYY-GA-------PQLLP--VAGSQ   74 (330)
T ss_pred             HHheeecCCcC--CCC-CCCcccCH---HH-------HHhCCC--ChHHHHHHHHHHh-CC-------CCEEE--CcCHH
Confidence            47899999962  233 22222211   11       122632  3389999999998 43       79999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP  190 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP  190 (407)
                      +++.++.  .  +.+||+|++++|+|+.+...++..|++++.+|+.          ++++.+.   +++++++ ++||||
T Consensus        75 ~al~~~~--~--~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~----------~~~~~~~---~~~~v~l-~nP~NP  136 (330)
T PRK05664         75 AAIQALP--R--LRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA----------EVEAALD---SLDVLVV-VNPNNP  136 (330)
T ss_pred             HHHHHHH--H--ccCCCEEEEcCCChHHHHHHHHHcCCeEEEechh----------hHhhhhc---CCCEEEE-eCCcCC
Confidence            9998873  2  5699999999999999999999999999998761          3444443   4556666 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435          191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK  270 (407)
Q Consensus       191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~  270 (407)
                      ||.+++.+++++|+++|+++|++||+||+|.++...      .++..+. ..+++++++||||.||++|+|+||+  +++
T Consensus       137 TG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~------~s~~~~~-~~~~vi~~~SfSK~~gl~GlRiG~~--v~~  207 (330)
T PRK05664        137 TGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQ------HSLAACA-HRPGLIVLRSFGKFFGLAGARLGFV--LAE  207 (330)
T ss_pred             CCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCc------ccccccc-cCCCEEEEeeccccccCCCcceEEE--EeC
Confidence            999999999999999999999999999999876521      1222222 3468999999999999999999999  565


Q ss_pred             ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 015435          271 TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  350 (407)
                       ++    +.+.+......  .+.+.+.|.++..+|.+.       .+.++.+++++++++.+.+.|++.+    +... +
T Consensus       208 -~~----l~~~~~~~~~~--~~~~~~~~~~~~~~L~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~-~  268 (330)
T PRK05664        208 -PA----LLRALAELLGP--WTVSGPTRWLAQAALADT-------PWQRRQRERLLAASQRLAALLRRHG----LTPA-G  268 (330)
T ss_pred             -HH----HHHHHHHhcCC--CCCCHHHHHHHHHHHhCh-------HHHHHHHHHHHHHHHHHHHHHHHCC----Cccc-C
Confidence             44    44545444332  356778888888888765       2345678889999999999999876    4321 2


Q ss_pred             CceeEEecCC-CHHHHHHhHhhccEEEcCCC-----eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          351 QIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG-----RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       351 ~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg-----Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ..++|.|+.. +.+.+.+.|.++||.+...+     ||+++. ++++++++.+.|+++.++
T Consensus       269 ~~~~f~~~~~~~~~~~~~~l~~~gi~v~~f~~~~~iRis~~~-~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        269 GCALFQWVRTEDAAALHEFLARRGILTRLFEQPASLRFGLPA-DEADWARLDQALLAYRKE  328 (330)
T ss_pred             CcceEEEEecCCHHHHHHHHHHCCeEEEECCCCCeEEEECCC-CHHHHHHHHHHHHHHHhh
Confidence            2237888866 45556666777899997643     999985 667889999998887654

>PRK03321 putative aminotransferase; Provisional

Probab=100.00  E-value=7.1e-37  Score=288.10  Aligned_cols=324  Identities=17%  Similarity=0.217  Sum_probs=241.1

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      .++|+|+.|.+   .. +.++.+.+++.+.+.    ....| +..|.+++|+++++++ +     +++++|++  |+|++
T Consensus        22 ~~~i~l~~~~~---~~-~~~~~~~~a~~~~~~----~~~~y-~~~g~~~lr~~ia~~~-~-----~~~~~I~~--~~G~~   84 (352)
T PRK03321         22 PGAIKLSSNET---PF-GPLPSVRAAIARAAA----GVNRY-PDMGAVELRAALAEHL-G-----VPPEHVAV--GCGSV   84 (352)
T ss_pred             ccceeccCCCC---CC-CCCHHHHHHHHHHHH----hcCcC-CCCcHHHHHHHHHHHh-C-----cCHHHEEE--CCCHH
Confidence            47899999975   21 234445555444432    23457 5689999999999998 4     34579999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP  190 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP  190 (407)
                      +++..+.  ...+.+||+|+++.|+|..+...++..|.+++.++++ + .+++|++.+++.+.  ++++++++ ++||||
T Consensus        85 ~~l~~~~--~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~-~-~~~~~~~~l~~~~~--~~~~~v~l-~~p~NP  157 (352)
T PRK03321         85 ALCQQLV--QATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLT-P-DHTHDLDAMAAAIT--DRTRLIFV-CNPNNP  157 (352)
T ss_pred             HHHHHHH--HHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCC-C-CCCCCHHHHHHhhc--cCCCEEEE-eCCCCC
Confidence            9998884  3346799999999999999888889999999999983 2 37899999999886  56777777 799999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435          191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK  270 (407)
Q Consensus       191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~  270 (407)
                      ||.+++.+++.++++.| ++++++|+||+|.++.+++..  ..++.. ....+++++++||||.||++|+|+||+  +++
T Consensus       158 tG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~--~~~~~~-~~~~~~vi~~~S~SK~~g~~GlRiG~~--v~~  231 (352)
T PRK03321        158 TGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDDV--PDGLEL-VRDHPNVVVLRTFSKAYGLAGLRVGYA--VGH  231 (352)
T ss_pred             cCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcCC--CcHHHH-HhhCCCEEEEecchHHhhhHHHhhhhh--cCC
Confidence            99999999888887765 479999999999999886421  122222 234578999999999999999999999  565


Q ss_pred             ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 015435          271 TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  350 (407)
                       ++    +.+.+....  ...+.+.++|.++..++...+      . ..+..+++.++++.+.+.|++.+    +.+.. 
T Consensus       232 -~~----~~~~~~~~~--~~~~~s~~~q~~a~~~l~~~~------~-~~~~~~~~~~~r~~~~~~L~~~~----~~~~~-  292 (352)
T PRK03321        232 -PE----VIAALRKVA--VPFSVNSLAQAAAIASLAAED------E-LLERVDAVVAERDRVRAALRAAG----WTVPP-  292 (352)
T ss_pred             -HH----HHHHHHHhc--CCCCCCHHHHHHHHHHhcCHH------H-HHHHHHHHHHHHHHHHHHHHHCC----CccCC-
Confidence             44    444444332  234778889988888886432      2 22333444556677889998876    55444 


Q ss_pred             CceeEEecCC--CHHHHHHhHhhccEEEcCCC----eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          351 QIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG----RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       351 ~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg----Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+|+|.|+.+  +.+.+.+.|+++||.+.+.+    ||+++  +.+++++++++|++++..
T Consensus       293 ~~g~~i~i~l~~~~~~~~~~l~~~gI~v~~~~~~~iRi~~~--~~~~~~~~~~al~~~~~~  351 (352)
T PRK03321        293 SQANFVWLPLGERTADFAAAAAEAGVVVRPFAGEGVRVTIG--APEENDAFLRAARAWRAG  351 (352)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHCCEEEEccCCCcEEEeeC--CHHHHHHHHHHHHHHhcc
Confidence            4567888866  34445555677999999854    88886  678899999999988753

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.2e-36  Score=286.79  Aligned_cols=297  Identities=16%  Similarity=0.189  Sum_probs=228.1

Q ss_pred             cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCC-CeEEecCCCCCChHHHHhhc
Q 015435           68 VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ-LTIYIPQPTWGNHPKVFTLA  146 (407)
Q Consensus        68 ~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~g-d~Vi~~~p~y~~~~~~~~~~  146 (407)
                      ...|+. .+..++|+++++++ +     +++++|++  |+|+++++.+++  ...+.+| |.|++++|+|..+...++..
T Consensus        53 ~~~Y~~-~~~~~lr~~ia~~~-~-----~~~~~I~~--t~G~~~~l~~~~--~~~~~~g~~~vlv~~p~y~~~~~~~~~~  121 (364)
T PRK04781         53 TRRYPD-PQPPGLRSALAALY-G-----CAPEQLLI--GRGSDEAIDLLV--RALCVPGRDAVLVTPPVFGMYAVCARLQ  121 (364)
T ss_pred             hccCCC-CCHHHHHHHHHHHh-C-----cChHHEEE--eCCHHHHHHHHH--HHhcCCCCCeEEEcCCChHHHHHHHHHc
Confidence            455754 45789999999988 4     34689999  999999999985  3336788 79999999999998888999


Q ss_pred             CceeeEEEeecC-CCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435          147 GLSVKTYRYYDP-ATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS  225 (407)
Q Consensus       147 G~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~  225 (407)
                      |.+++.+|+.++ .++.+|++++.+.+.. ++++++++ ++||||||.+++.+++++|++.|+ +++++|+||+|.+|.+
T Consensus       122 g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-~~~~lv~l-~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~  198 (364)
T PRK04781        122 NAPLVEVPLVDGADGFHADVPAIVAAALA-SNAKLVFL-CSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSD  198 (364)
T ss_pred             CCEEEEEecCCCccCCCcCHHHHHHHHhc-cCCeEEEE-cCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcC
Confidence            999999998422 3456788888765532 45677777 799999999999999999999885 4789999999999985


Q ss_pred             CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHh
Q 015435          226 GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL  305 (407)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (407)
                      ..      +...+....+++++++||||.||++|+|+||+  +++     .++...+......  ++.+.++|.++..++
T Consensus       199 ~~------~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~--v~~-----~~l~~~l~~~~~~--~~~~~~~~~~a~~~l  263 (364)
T PRK04781        199 VP------SAVGLLARYDNLAVLRTLSKAHALAAARIGSL--IAN-----AELIAVLRRCQAP--YPVPTPCAALAEQAL  263 (364)
T ss_pred             Cc------chHHHHhhCCCEEEEecChhhcccccceeeee--eCC-----HHHHHHHHhccCC--CCCCHHHHHHHHHHH
Confidence            31      11122344678999999999999999999999  565     4455555555433  367788888888888


Q ss_pred             cChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-CHHHHHHhHhhccEEEcCCC----
Q 015435          306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG----  380 (407)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg----  380 (407)
                      ++..    + ....+.+++++++++.+.+.|++++.   +....|.+|+|.|+.+ +.+.+.+.+.++||.+.++.    
T Consensus       264 ~~~~----~-~~~~~~~~~~~~~r~~l~~~L~~~~~---~~~~~p~~g~f~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~  335 (364)
T PRK04781        264 SAPA----L-AVTARRVAEVRAERERLHAALAQLPG---VRRVYPSQGNFLLVRFDDAEAAFQALLAAGVVVRDQRAAPR  335 (364)
T ss_pred             hccc----H-HHHHHHHHHHHHHHHHHHHHHHhCCC---CCeECCCCCcEEEEEcCCHHHHHHHHHHCCeEEeeCCCCCC
Confidence            7652    1 23445556788999999999988742   4434566788999877 45556666777999998851    


Q ss_pred             -----eEEecCCCCCChhHHHHHHHHHH
Q 015435          381 -----RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       381 -----Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                           ||+++  +++++++++++|+++.
T Consensus       336 ~~~~~Ris~~--~~~~~~~l~~al~~~~  361 (364)
T PRK04781        336 LSDALRITLG--TPEQNDRVLAALQRTQ  361 (364)
T ss_pred             CCCeEEEeCC--CHHHHHHHHHHHHHHH
Confidence                 99988  5688899999988754

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=100.00  E-value=5.3e-36  Score=281.67  Aligned_cols=317  Identities=15%  Similarity=0.164  Sum_probs=240.9

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      .++|||++|.+    +.+.|+.+++++.+...    ..+.|++..+ +++|+++++++ +     +++++|++  |+|++
T Consensus        19 ~~~i~l~~~~~----~~~~~~~~~~a~~~~~~----~~~~y~~~~~-~~lr~~ia~~~-~-----~~~~~i~~--~~G~~   81 (346)
T TIGR01141        19 KEVIKLNSNEN----PFGPPPKAKEALRAEAD----KLHRYPDPDP-AELKQALADYY-G-----VDPEQILL--GNGSD   81 (346)
T ss_pred             CceEEccCCCC----CCCCCHHHHHHHHHhHH----HhhcCCCCCH-HHHHHHHHHHh-C-----cChHHEEE--cCCHH
Confidence            58999999984    33556667766666543    2456866555 89999999998 4     33589999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP  190 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP  190 (407)
                      +++..++  ...+.+||+|++++|+|+.+...++..|.+++.+++. + ++.+|++++++.+.  ++++++++ ++|+||
T Consensus        82 ~~l~~~~--~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~-~~~~d~~~l~~~~~--~~~~~v~l-~~p~Np  154 (346)
T TIGR01141        82 EIIELLI--RAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLD-E-DGQLDLEDILVAID--DKPKLVFL-CSPNNP  154 (346)
T ss_pred             HHHHHHH--HHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccC-C-CCCCCHHHHHHhcC--CCCCEEEE-eCCCCC
Confidence            9998874  3446799999999999999988889999999999983 3 36689999999875  56777777 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435          191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK  270 (407)
Q Consensus       191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~  270 (407)
                      ||.+++.+++.++++.|+ +|+++|+|++|.++...+   ....   .....+++++++|+||.+|++|+|+||+  +++
T Consensus       155 tG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~---~~~~---~~~~~~~~i~~~S~sK~~g~~G~r~G~~--~~~  225 (346)
T TIGR01141       155 TGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP---STLP---LLAEYPNLIVLRTLSKAFGLAGLRIGYA--IAN  225 (346)
T ss_pred             CCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc---cHHH---HHhhCCCEEEEehhhHhhhchhhhceee--ecC
Confidence            999999999999988887 799999999999776532   1111   1223457899999999999999999999  454


Q ss_pred             ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 015435          271 TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  350 (407)
                       ++    +.+.+.....  .++.+.++|.++..++++.       .+.++.+++++++++.+.+.|++.+.   +.+.+ 
T Consensus       226 -~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~g---~~~~~-  287 (346)
T TIGR01141       226 -AE----IIDALNKVRA--PFNLSRLAQAAAIAALRDD-------DFIEKTVEEINAERERLYDGLKKLPG---LEVYP-  287 (346)
T ss_pred             -HH----HHHHHHhccC--CCCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHhcCC---CEECC-
Confidence             44    4444443332  2366788899888888765       23667788899999999999988731   55443 


Q ss_pred             CceeEEecCC--CHHHHHHhHhhccEEEcCC-------C--eEEecCCCCCChhHHHHHHH
Q 015435          351 QIGMFTFTGL--NSEQVAFMTKEYHIYMTSD-------G--RISMAGLSSKTVPHLTDAIH  400 (407)
Q Consensus       351 ~~~~~~~~~~--~~~~~~~~l~~~gi~~~~g-------g--Ris~~~~~~e~i~~~~~~l~  400 (407)
                      .+++|.|+.+  +.+.+.+.|.++||.+.++       +  |++++  ++++++++++.|+
T Consensus       288 ~~g~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~--~~~~i~~~~~~l~  346 (346)
T TIGR01141       288 SDANFVLIRFPRDADALFEALLEKGIIVRDLNSYPGLPNCLRITVG--TREENDRFLAALR  346 (346)
T ss_pred             CcCCEEEEecCCCHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC--CHHHHHHHHHHhC
Confidence            4567777765  3455555556689999875       2  89977  6788888887763

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3e-36  Score=283.59  Aligned_cols=311  Identities=17%  Similarity=0.167  Sum_probs=232.5

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      ...++|+.+..  +.  +.+ +.+     ..    .....|++ .+.++||+++++++ +     +++++|++  |+|++
T Consensus        31 ~~~~~l~~ne~--~~--~~~-~~~-----~~----~~~~~Yp~-~~~~~Lr~aia~~~-~-----~~~~~I~i--t~Gs~   87 (354)
T PRK04635         31 RGDIWINANES--PF--NNE-YKL-----DL----ARLNRYPE-CQPPELINAYSAYA-G-----VAPEQILT--SRGAD   87 (354)
T ss_pred             CCcEEeeCCCC--CC--CCC-hhh-----hh----HHhccCCC-CCHHHHHHHHHHHh-C-----cCHHHEEE--eCCHH
Confidence            56799998873  12  222 211     11    12455754 46899999999987 4     45689999  99999


Q ss_pred             cHHHHHHHHHHhhcCC-CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          111 GSLRVGAEFLARHYHQ-LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~g-d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      +++.+++..  .+.+| |+|++++|+|..|...++..|++++.+|+.  .++.+|++.++. +   ++++++++ ++|||
T Consensus        88 ~~i~~~~~~--~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~--~~~~~~~~~l~~-~---~~~~li~i-~nP~N  158 (354)
T PRK04635         88 EAIELLIRA--FCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLT--ADYQLPLDYIEQ-L---DGAKLVFI-CNPNN  158 (354)
T ss_pred             HHHHHHHHH--hcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecC--CCCCCCHHHHHh-c---cCCCEEEE-eCCCC
Confidence            999999533  36788 899999999999999999999999999983  346788888863 2   46778777 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||++++.+++++|++.|+  +++||+||+|.+|....      +...+....+++++++||||.||++|+|+||+  ++
T Consensus       159 PTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~~------s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~--i~  228 (354)
T PRK04635        159 PTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPEY------SVADLLASYPNLVVLRTLSKAFALAGARCGFT--LA  228 (354)
T ss_pred             CCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhccCc------chHHHHhhCCCEEEEechHHHhhhhHHHHhhh--hC
Confidence            9999999999999988876  49999999999887421      22223344578999999999999999999999  56


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      + ++    +.+.+.....  ..+.+.+.+.++..++.+...     +.+++.++.++++++.+.+.|++.+.   +.+.+
T Consensus       229 ~-~~----~~~~l~~~~~--~~~~~~~~~~~a~~~l~~~~~-----~~~~~~~~~~~~~r~~l~~~L~~~~~---~~~~~  293 (354)
T PRK04635        229 N-EE----LIEILMRVIA--PYPVPLPVSEIATQALSEAGL-----ARMKFQVLDLNAQGARLQAALSMYGG---AKVLE  293 (354)
T ss_pred             C-HH----HHHHHHhhcC--CCCCCHHHHHHHHHHHhcccH-----HHHHHHHHHHHHHHHHHHHHHHhCCC---ceECC
Confidence            5 44    4444443332  236677778888888865421     34566777888999999999998752   45555


Q ss_pred             CCceeEEecCC-CHHHHHHhHhhccEEEcCC------C--eEEecCCCCCChhHHHHHHHH
Q 015435          350 KQIGMFTFTGL-NSEQVAFMTKEYHIYMTSD------G--RISMAGLSSKTVPHLTDAIHA  401 (407)
Q Consensus       350 ~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~g------g--Ris~~~~~~e~i~~~~~~l~~  401 (407)
                      +. |.|.|+.+ +.+.+.++++++||.+..+      +  |||++  +++++++++++|++
T Consensus       294 ~~-g~f~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~--~~e~~~~l~~al~~  351 (354)
T PRK04635        294 GN-GNYVLAKFDDVDAVFKALWDAGIVARAYKDPRLANCIRFSFS--NRAETDKLIGLIRN  351 (354)
T ss_pred             CC-CcEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC--CHHHHHHHHHHHHH
Confidence            65 45777766 5555667777899998653      1  99987  67889999998875

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=100.00  E-value=7.3e-36  Score=278.12  Aligned_cols=317  Identities=16%  Similarity=0.166  Sum_probs=235.0

Q ss_pred             CCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCC
Q 015435           15 EDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSP   94 (407)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~   94 (407)
                      +.+++++.+.+.- ++++.++|+.|.+  +.  ++|  ...    ..   .....+|++..+ +++|+.+++++ +    
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~--~~~--~~~----~~---~~~~~~y~~~~~-~~lr~~la~~~-~----   61 (330)
T TIGR01140         2 GGNLRRAAARYGI-PPEDWLDFSTGIN--PL--GPP--VPP----IP---ASAWARYPDPEY-DELRAAAAAYY-G----   61 (330)
T ss_pred             CccHHHHHHHcCC-ChhheeEccccCC--CC--CCC--hhh----cc---hHHHhhCCCccH-HHHHHHHHHHh-C----
Confidence            4567888887652 3467899999984  22  222  211    11   223566866554 99999999988 4    


Q ss_pred             CCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435           95 AIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA  174 (407)
Q Consensus        95 ~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~  174 (407)
                       +++++|++  |+|+++++.++.   ..+.+| .|++++|+|..+...++..|.+++.++         |++++++.+. 
T Consensus        62 -~~~~~i~~--t~G~~~~i~~~~---~~l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~~-  124 (330)
T TIGR01140        62 -LPAASVLP--VNGAQEAIYLLP---RLLAPG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAALE-  124 (330)
T ss_pred             -CChhhEEE--CCCHHHHHHHHH---HHhCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhcc-
Confidence             23589999  999999999873   335677 799999999999999999999998885         7788888774 


Q ss_pred             CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435          175 APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN  254 (407)
Q Consensus       175 ~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
                        +++++++ ++||||||.+++.+++++|+++|+++|+++|+|++|.++....      ++..+.+..+++++++||||.
T Consensus       125 --~~~~v~i-~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~------~~~~~~~~~~~~i~~~S~SK~  195 (330)
T TIGR01140       125 --ELDVLVL-CNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA------SLAPQAARFPGLVVLRSLTKF  195 (330)
T ss_pred             --cCCEEEE-eCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc------chhhHhccCCCEEEEEecchh
Confidence              3556666 8999999999999999999999999999999999999887531      222222335789999999999


Q ss_pred             ccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          255 MGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       255 ~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                      +|++|+|+||+  +++ ++    +.+.+.....  ..+.+.++|.++..++++.       .+.+..+++++++++++.+
T Consensus       196 ~g~~G~R~G~i--~~~-~~----~~~~l~~~~~--~~~~s~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~  259 (330)
T TIGR01140       196 FGLAGLRLGFV--VAH-PA----LLARLREALG--PWTVNGPARAAGRAALADT-------AWQAATRARLAAERARLAA  259 (330)
T ss_pred             hcCchhhhhhe--eCC-HH----HHHHHHhcCC--CCCchHHHHHHHHHHHhch-------HHHHHHHHHHHHHHHHHHH
Confidence            99999999999  455 44    4444444332  2356778899999898865       2345667889999999999


Q ss_pred             HHHhcCCCCCcccccCCceeEEecCC-CHHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHH
Q 015435          335 ALSARGTPGDWSHIIKQIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAI  399 (407)
Q Consensus       335 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l  399 (407)
                      .|++.+.   +.+ .+.+++|.|+.+ +.+.+.+.|.++||.+.||.          ||+++. ..++ ++++.+|
T Consensus       260 ~L~~~~~---~~~-~~~~~~f~~~~~~~~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~-~~~~~~l  329 (330)
T TIGR01140       260 LLARLGG---LEV-VGGTALFLLVRTPDAAALHEALARRGILIRDFDNFPGLDPRYLRFALPT-DEEN-DRLEEAL  329 (330)
T ss_pred             HHHhCCC---ceE-CCCCCeEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecC-HHHH-HHHHHhh
Confidence            9998863   333 345788999876 33334444445899999862          999985 4444 6666654

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=5.7e-35  Score=261.09  Aligned_cols=322  Identities=17%  Similarity=0.181  Sum_probs=254.1

Q ss_pred             cccCCCCCCcHHHHHHHHHHHhCCC-CCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc
Q 015435           68 VKEYLPIVGLVDFNKLSAKLILGAD-SPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA  146 (407)
Q Consensus        68 ~~~y~~~~g~~~l~~~~a~~~~~~~-~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~  146 (407)
                      ..+|++..|.+++...+.++..... ....+.-++++  |+|.|.+++..+..  .++.||.|++..++|+.....++..
T Consensus        93 alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiii--t~G~t~~l~~~l~~--~~N~gd~vlie~~ty~~AL~s~~a~  168 (472)
T KOG0634|consen   93 ALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIII--TNGNTDGLFKVLRT--LINRGDHVLIEEYTYPSALQSMEAL  168 (472)
T ss_pred             hhccccccCcHHHHHHHHHhccccccCCCCCCceEEE--ecCCchHHHHHHHH--hhcCCCceEEecccchHHHHhcccc
Confidence            4689999999999999999763122 22334458999  99999999999544  4889999999999999999999999


Q ss_pred             CceeeEEEeecCCCCCcChhhHHHHHHc-------CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccc
Q 015435          147 GLSVKTYRYYDPATRGLNFQGLLEDLRA-------APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSA  219 (407)
Q Consensus       147 G~~~~~v~~~~~~~~~~d~~~l~~~i~~-------~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~  219 (407)
                      |+++++|+++   ..++++|.|++.+..       .++..+++.+++.+||||..++.+..++|.++|+||++++|+||.
T Consensus       169 gv~~ipv~md---~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdp  245 (472)
T KOG0634|consen  169 GVKIIPVKMD---QDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDP  245 (472)
T ss_pred             CceEEecccc---CCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCc
Confidence            9999999882   368999999998864       134678888899999999999999999999999999999999999


Q ss_pred             cccccCCC------CCchhHHHHHHH----------HcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHh
Q 015435          220 YQGFASGS------LDADAQSVRMFV----------ADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLK  283 (407)
Q Consensus       220 y~~~~~~~------~~~~~~~~~~~~----------~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~  283 (407)
                      |.-+.++.      .+.+.++...+.          +...++|-+.||||.++ ||+|+||+   +.++.    +.++.-
T Consensus       246 Yy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~i---t~~~~----~l~ril  317 (472)
T KOG0634|consen  246 YYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWI---TGNSL----FLKRIL  317 (472)
T ss_pred             cceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEe---ecCHH----HHHHHh
Confidence            98777763      111222211222          22468999999999998 99999999   45443    333333


Q ss_pred             hhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC--
Q 015435          284 LVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN--  361 (407)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--  361 (407)
                      ......+.+++...|.++-+.++. ...+-|.+++.+++..+..++..+.+++.+.-...-.++..|.+|+|.|+.++  
T Consensus       318 ~~ae~~t~~pSg~sq~iv~a~l~~-wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~  396 (472)
T KOG0634|consen  318 DLAEVATSGPSGFSQGIVYAMLKR-WGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYI  396 (472)
T ss_pred             hhcceeecCcccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEeccc
Confidence            344555667888888888877764 23345778899999999999999999998742211257789999999999663  


Q ss_pred             -----------HHHHHHhHhhccEEEcCCC---------------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          362 -----------SEQVAFMTKEYHIYMTSDG---------------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       362 -----------~~~~~~~l~~~gi~~~~gg---------------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                                 .+.+...+.++||.+.+|.               |++++..+.|+++++++++.+++++
T Consensus       397 ~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike  466 (472)
T KOG0634|consen  397 NFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKE  466 (472)
T ss_pred             ccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHH
Confidence                       2346677788999998872               9999887889999999999999976

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=6.9e-35  Score=275.74  Aligned_cols=315  Identities=16%  Similarity=0.190  Sum_probs=229.6

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec-CC
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC-LS  108 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t-~g  108 (407)
                      +.++|||++|.+   .. +.++.+.+++.+.+.    ....|++. ..+++|+++++++ +     +++++|++  | +|
T Consensus        33 ~~~~i~l~~~~~---~~-~~~~~~~~~~~~~~~----~~~~y~~~-~~~~lr~~ia~~~-~-----~~~~~i~~--~~~G   95 (361)
T PRK00950         33 PESIIKLGSNEN---PL-GPSPKAVEAIEKELS----KIHRYPEP-DAPELREALSKYT-G-----VPVENIIV--GGDG   95 (361)
T ss_pred             ccceEEccCCCC---CC-CCCHHHHHHHHHHHH----hhcCCCCC-CHHHHHHHHHHHh-C-----CCHHHEEE--eCCC
Confidence            358999999973   22 334455555555443    24557554 4589999999998 4     23577877  5 56


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      +++++.+++  ...+.+||+|++++|+|..+...++..|++++.++.  +.++++|++++++.+.  ++++++++ ++|+
T Consensus        96 a~~~i~~~~--~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~~--~~~~~v~~-~~p~  168 (361)
T PRK00950         96 MDEVIDTLM--RTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKR--EEDFSLDVDSVLNAIT--EKTKVIFL-CTPN  168 (361)
T ss_pred             HHHHHHHHH--HHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec--CCCCCcCHHHHHHHhc--cCCCEEEE-eCCC
Confidence            678888774  333679999999999999999899999999999986  4456899999999886  45677777 7999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      ||||.+++.+++.+|   |+++|+++|+|++|.++...    +..+   +....+++++++||||.+|++|+|+||+  +
T Consensus       169 nptG~~~~~~~l~~l---~~~~~~~li~De~y~~~~~~----~~~~---~~~~~~~vi~~~S~SK~~g~~GlRiG~~--~  236 (361)
T PRK00950        169 NPTGNLIPEEDIRKI---LESTDALVFVDEAYVEFAEY----DYTP---LALEYDNLIIGRTFSKVFGLAGLRIGYG--F  236 (361)
T ss_pred             CCCCCCcCHHHHHHH---HHHCCcEEEEECchhhhCcc----chHH---HHHhcCCEEEEEeehHhhcCchhhcchh--c
Confidence            999999998776666   77889999999999887621    1222   2334568999999999999999999999  5


Q ss_pred             ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 015435          269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI  348 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  348 (407)
                      ++ +    ++...+......  .+.+.+.+.++..++.+.       +++++.+++++++++++.+.|+       +.+.
T Consensus       237 ~~-~----~~~~~~~~~~~~--~~~~~~~~~~a~~~l~~~-------~~~~~~~~~~~~~r~~l~~~l~-------~~~~  295 (361)
T PRK00950        237 VP-E----WLIDYYMRAKTP--FSLTRLSQAAAIAALSDK-------EYIEKSIEHGIKSREYLYNELP-------FKVY  295 (361)
T ss_pred             CC-H----HHHHHHHHhcCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHhhcC-------eeEC
Confidence            65 3    344444444333  356778888888888764       3456667778888888887764       2222


Q ss_pred             cCCceeEEecCC---CHHHHHHhHhhccEEEcCC------C----eEEecCCCCCChhHHHHHHHHHHH
Q 015435          349 IKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSD------G----RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       349 ~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g------g----Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                       +.+++|.|+.+   +.+.+.+.|.++||.+.++      +    ||+++  +.+++++++++|+++++
T Consensus       296 -~~~~~~i~~~~~~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~--~~~~~~~l~~~L~~il~  361 (361)
T PRK00950        296 -PSEANFVLVDVTPMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG--TFEENERFLEILKEIVE  361 (361)
T ss_pred             -CCcceEEEEECCCCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC--CHHHHHHHHHHHHHHhC
Confidence             44667888754   4455544445689999874      1    88988  56789999999988763

>PRK08354 putative aminotransferase; Provisional

Probab=100.00  E-value=1e-34  Score=268.12  Aligned_cols=294  Identities=16%  Similarity=0.200  Sum_probs=206.7

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      ..++|||+.|..    ..+ |+.+.+++.+.+.    ....|+.   ...+|+++++++ +        ++|++  |+|+
T Consensus         7 ~~~~i~l~~~~n----p~~-p~~~~~a~~~~~~----~~~~yp~---~~~l~~~ia~~~-~--------~~I~v--t~G~   63 (311)
T PRK08354          7 EEGLIDFSASVN----PYP-PEWLDEMFERAKE----ISGRYTY---YEWLEEEFSKLF-G--------EPIVI--TAGI   63 (311)
T ss_pred             ccceeEecCCCC----CCC-CHHHHHHHHHHHH----HhhcCCC---hHHHHHHHHHHH-C--------CCEEE--CCCH
Confidence            467999998852    212 3344444443332    2345742   467999999988 4        47999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++.++.   ..+.+||+|++++|+|+.+...++..|.+++.++        +|++.+++.+.   +++++++ ++|||
T Consensus        64 ~~al~~~~---~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~---~~~~vi~-~~P~N  128 (311)
T PRK08354         64 TEALYLIG---ILALRDRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLEELVE---RNSVVFF-CNPNN  128 (311)
T ss_pred             HHHHHHHH---HhhCCCCeEEEeCCCcHHHHHHHHHcCCEEeecC--------CCHHHHHHhhc---CCCEEEE-ecCCC
Confidence            99998874   3345899999999999999999999999997652        57888888765   3456555 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||.+++.+++++|+++|+++|+++|+||+|.+|.+++.   .       ...+++++++||||.|+++|+|+||+  ++
T Consensus       129 PTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~---~-------~~~~~vi~~~S~SK~~~l~GlRiG~~--v~  196 (311)
T PRK08354        129 PDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE---S-------PEGENIIKLRTFTKSYGLPGIRVGYV--KG  196 (311)
T ss_pred             CCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc---c-------cCCCcEEEEeccHhhcCCccceeeee--ee
Confidence            999999999999999999999999999999999987631   1       11568999999999999999999999  45


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      .    .+.    +......+  ..+...+.++..++++.     + +++.+.++.+.++++.+.+.+          ...
T Consensus       197 ~----~~~----l~~~~~~~--~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~l~~~l----------~~~  250 (311)
T PRK08354        197 F----EEA----FRSVRMPW--SIGSTGYAFLEFLIEDD-----F-EHLRKTMPLIWREKERFEKAL----------YVK  250 (311)
T ss_pred             h----HHH----HHHcCCCc--cCCHHHHHHHHHHHHhH-----H-HHHHHHHHHHHHHHHHHHHhc----------CCC
Confidence            1    222    33233222  44455566666665532     1 223344444444444443332          124


Q ss_pred             CCceeEEecCC-CHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHH
Q 015435          350 KQIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       350 ~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~  402 (407)
                      +.++++. +.+ +.+.+.+.+.++||.+.||.        ||+++.  +++.+++.+.|+++
T Consensus       251 ~~~~~~~-~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~--~~~~~~l~~al~~~  309 (311)
T PRK08354        251 SDANFFI-KDVGDAEKFVEFLKRNGILVRDCTSFGLPGYIRFSVRD--REENEKLIRALREW  309 (311)
T ss_pred             CCCcEEE-EECCCHHHHHHHHHHCCeEEEecccCCCCCeEEEEeCC--HHHHHHHHHHHHHh
Confidence            6677666 444 44445555667899999873        999884  45677777777764

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=100.00  E-value=9.4e-32  Score=258.21  Aligned_cols=339  Identities=11%  Similarity=0.047  Sum_probs=235.0

Q ss_pred             cCCCCeeeeeeeeeecCCCccccc---hhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVL---NVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ..+.++|+|++|.|. .|. +.|.   +...+..+++.  . ...+|++..|.++||+++++++ +.       +++++ 
T Consensus        33 ~~g~~~~~L~~g~p~-~D~-~tds~t~a~~~a~~~a~~--~-g~~~Y~~~~g~~~Lreaia~~~-~~-------~~vv~-   98 (460)
T PRK13238         33 EAGYNPFLLKSEDVF-IDL-LTDSGTGAMSDRQWAAMM--R-GDEAYAGSRSYYRLEDAVKDIF-GY-------PYTIP-   98 (460)
T ss_pred             HcCCCEEeCCCCCCC-CCC-CCCCCchhhhHHHHHHHH--h-CCcccCCCCCHHHHHHHHHHHh-CC-------CcEEE-
Confidence            456899999999862 133 3333   45555556664  2 2456999999999999999999 53       57888 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecC------CCC--CcChhhHHHHHHcC-
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDP------ATR--GLNFQGLLEDLRAA-  175 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~------~~~--~~d~~~l~~~i~~~-  175 (407)
                       |+||++|+.+++  ...+++|| |++++|.|..+...++..|++++.+++...      +.+  .+|+++|++.+++. 
T Consensus        99 -t~ggt~A~~~~~--~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~  174 (460)
T PRK13238         99 -THQGRAAEQILF--PVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVG  174 (460)
T ss_pred             -CCCHHHHHHHHH--HHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcC
Confidence             999999999994  55588999 999999999999999999999999998421      123  49999999999743 


Q ss_pred             -CCCcEEEEecCCCCCCC-CCCCHHHHHHHHHHHHHcCceeeecccccc--ccCCCC---CchhHHHHHHHHcCCcEEEE
Q 015435          176 -PSGAIVLLHACAHNPTG-VDPTLEQWEQIRQLMRSKGLLPFFDSAYQG--FASGSL---DADAQSVRMFVADGGECLVA  248 (407)
Q Consensus       176 -~~~~~v~i~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~D~~y~~--~~~~~~---~~~~~~~~~~~~~~~~~i~~  248 (407)
                       ++++++++ ++|+|||| .+++.+++++|+++|++||++||+|+++..  ..+...   .....++..+      +..+
T Consensus       175 ~~~tk~Ivl-~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i------~~~~  247 (460)
T PRK13238        175 AENVPFIVM-TITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI------AREM  247 (460)
T ss_pred             CCceeEEEE-ecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH------hhhh
Confidence             24566666 89999997 999999999999999999999999997632  222110   0011122211      2334


Q ss_pred             EecCccccccCCCc-----ceeEEeecChhhHHHHHHHHhhhhhcccCCC-ChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          249 QSYAKNMGLYGERV-----GALSIVCKTEDVASRVESQLKLVIRPMYSSP-PIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       249 ~s~sK~~~~~G~r~-----G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      +|++|.+.++|+|+     |+++ +++++++.+++....-......+++. +...|.++...+.... .   .+++..  
T Consensus       248 ~s~~D~~~~Sg~K~g~~~~GG~i-~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~-~---~~~~~~--  320 (460)
T PRK13238        248 FSYADGLTMSAKKDAMVNIGGLL-CFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGM-D---EDYLAY--  320 (460)
T ss_pred             cccCcEEEEecccCCCCcceeEE-EcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhh-C---hHHHHH--
Confidence            66777777777765     3331 45555555544332111112223333 3333556555554310 0   022222  


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-------------CHHHHHHhHhhccEEEcCCC---------
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-------------NSEQVAFMTKEYHIYMTSDG---------  380 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~gi~~~~gg---------  380 (407)
                        ..+++++|.+.|++.|    +.+..|.||+|++++.             +..++.+++++.||.+.|+|         
T Consensus       321 --~~~~~~~l~~~L~~~G----~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~  394 (460)
T PRK13238        321 --RIGQVEYLGEGLEEAG----VPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPK  394 (460)
T ss_pred             --HHHHHHHHHHHHHHCC----CCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCC
Confidence              2335799999999988    7888899999998844             23467899999999998853         


Q ss_pred             ------------eEEecC--CCCCChhHHHHHHHHHHH
Q 015435          381 ------------RISMAG--LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       381 ------------Ris~~~--~~~e~i~~~~~~l~~~l~  404 (407)
                                  |+++..  .+.+.++.++++|+.+.+
T Consensus       395 ~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~  432 (460)
T PRK13238        395 TGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE  432 (460)
T ss_pred             CccccCCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence                        888874  377889999999998774

>cd00609 AAT_like Aspartate aminotransferase family

Probab=100.00  E-value=2.2e-31  Score=250.85  Aligned_cols=333  Identities=20%  Similarity=0.279  Sum_probs=247.3

Q ss_pred             eeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHH
Q 015435           34 LNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSL  113 (407)
Q Consensus        34 i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~  113 (407)
                      +||+.|.+   .. ..++..+.+....-  .......|.+..|..++++.+++++....+.....+++++  ++|+++++
T Consensus         1 ~~~~~~~~---~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~--~~~~t~a~   72 (350)
T cd00609           1 IDLSIGEP---DF-PPPPEVLEALAAAA--LRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVV--TNGAQEAL   72 (350)
T ss_pred             CCCCCCCC---CC-CCCHHHHHHHHHHh--hccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEE--ecCcHHHH
Confidence            57787765   11 22333333333311  2334566888999999999999999554333334578999  99999999


Q ss_pred             HHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh--hhHHHHHHcCCCCcEEEEecCCCCCC
Q 015435          114 RVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF--QGLLEDLRAAPSGAIVLLHACAHNPT  191 (407)
Q Consensus       114 ~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~--~~l~~~i~~~~~~~~v~i~~~p~NPt  191 (407)
                      ..++  .....+||+|++++++|.++...++..|.+++.++.++  ....+.  +.+++...  ++++++++ ++++|||
T Consensus        73 ~~~~--~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~--~~~~~v~i-~~~~~~t  145 (350)
T cd00609          73 SLLL--RALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDE--EGGFLLDLELLEAAKT--PKTKLLYL-NNPNNPT  145 (350)
T ss_pred             HHHH--HHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEEeccc--ccCCccCHHHHHhhcC--ccceEEEE-ECCCCCC
Confidence            9985  33367899999999999999999999999999999842  333433  45555443  56677777 5699999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecC
Q 015435          192 GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKT  271 (407)
Q Consensus       192 G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~  271 (407)
                      |.+++.+++++|+++|+++|+++|+|++|+.+.+.+....   ........+.+++++|++|.++.+|.|+|++  ++++
T Consensus       146 G~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i--~~~~  220 (350)
T cd00609         146 GAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPP---ALALLDAYERVIVLRSFSKTFGLPGLRIGYL--IAPP  220 (350)
T ss_pred             CcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccc---cccCcCccCcEEEEeecccccCCcccceEEE--ecCH
Confidence            9999999999999999999999999999998876543211   1111233457899999999999899999999  5663


Q ss_pred             hhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC
Q 015435          272 EDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ  351 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  351 (407)
                      ++    +.+.+.......+.+++...+.++..+++...      +..++.+++++++++++.+.|++.+.   .....+.
T Consensus       221 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~  287 (350)
T cd00609         221 EE----LLERLKKLLPYTTSGPSTLSQAAAAAALDDGE------EHLEELRERYRRRRDALLEALKELGP---LVVVKPS  287 (350)
T ss_pred             HH----HHHHHHHHHHhcccCCChHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHHhcCC---ccccCCC
Confidence            34    44444444444456788888888888887653      44677888899999999999998873   2224567


Q ss_pred             ceeEEecCCC----HHHHHHhHhhccEEEcCC------C----eEEecCCCCCChhHHHHHHH
Q 015435          352 IGMFTFTGLN----SEQVAFMTKEYHIYMTSD------G----RISMAGLSSKTVPHLTDAIH  400 (407)
Q Consensus       352 ~~~~~~~~~~----~~~~~~~l~~~gi~~~~g------g----Ris~~~~~~e~i~~~~~~l~  400 (407)
                      ++++.|+.+.    .+.+.++++++||.+.++      +    ||+++.. .+|+++++++|+
T Consensus       288 ~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~-~~~i~~~~~al~  349 (350)
T cd00609         288 GGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP-EEELEEALERLA  349 (350)
T ss_pred             ccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC-HHHHHHHHHHhh
Confidence            7888888653    456778888899999886      3    9999974 889999998886

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=7.9e-31  Score=231.07  Aligned_cols=338  Identities=16%  Similarity=0.206  Sum_probs=265.5

Q ss_pred             ccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCe
Q 015435           49 LVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT  128 (407)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~  128 (407)
                      .|..+++++.+-+....+....|+.+.|++-+|+.+|+++...++.+.++++|++  |.|++.++..++.++. -.+.+.
T Consensus        87 fp~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~L--T~GAS~ai~~il~l~~-~~~~~G  163 (475)
T KOG0258|consen   87 FPTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFL--TTGASPAIRSILSLLI-AGKKTG  163 (475)
T ss_pred             CCHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeee--cCCCcHHHHHHHHHHh-cCCCCc
Confidence            4667777777666533446778999999999999999999888888889999999  9999999999865542 237789


Q ss_pred             EEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC--CcEEEEecCCCCCCCCCCCHHHHHHHHHH
Q 015435          129 IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS--GAIVLLHACAHNPTGVDPTLEQWEQIRQL  206 (407)
Q Consensus       129 Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~--~~~v~i~~~p~NPtG~~~~~~~l~~i~~~  206 (407)
                      |++|-|.|+-|...+..+|...+.+-++++++|.+|.++|++.+.++.+  ++.++++.||.||||.+++.+.+++|+.+
T Consensus       164 vliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~f  243 (475)
T KOG0258|consen  164 VLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICF  243 (475)
T ss_pred             eEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHH
Confidence            9999999999999999999999999998888899999999999876421  23334447999999999999999999999


Q ss_pred             HHHcCceeeeccccccccCCCCCchhHHHHHHH-HcC------CcEEEEEecCccc-cccCCCcceeEEeecChhhHHHH
Q 015435          207 MRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-ADG------GECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASRV  278 (407)
Q Consensus       207 ~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~~~------~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~~  278 (407)
                      |.+++++|+.||+|++.++.+ ..+.+++.... ..+      ...+.++|.||.+ |-+|.|-|+..++-.+++..+.+
T Consensus       244 a~~~~l~llaDEVYQ~Nvy~~-~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi  322 (475)
T KOG0258|consen  244 AAEEGLVLLADEVYQDNVYTT-GSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQI  322 (475)
T ss_pred             HHHcCeEEechHHHHhhccCC-CcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHH
Confidence            999999999999999999874 34566665543 222      2447788999986 56899999998666677777765


Q ss_pred             HHHHhhhhhcccCCCChhHHHHHHHHhc----ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCcee
Q 015435          279 ESQLKLVIRPMYSSPPIHGASIVATILK----DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGM  354 (407)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  354 (407)
                      .+... .    ..+++..+|........    ....+++|....+.....++.+...+.+.++++..   +...+++|.+
T Consensus       323 ~Kl~s-i----~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~g---i~cn~~qGAM  394 (475)
T KOG0258|consen  323 KKLAS-I----KLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEG---ISCNPVQGAM  394 (475)
T ss_pred             HHHHh-h----hhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCc---eeeccCccce
Confidence            55222 2    23666677777766554    23566778888888999999999999999999864   8888999999


Q ss_pred             EEecCC---------------CHH-H-HHHhHhhccEEEcCCC-----------eEEecCCCCCChhHHHHHHHHH
Q 015435          355 FTFTGL---------------NSE-Q-VAFMTKEYHIYMTSDG-----------RISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       355 ~~~~~~---------------~~~-~-~~~~l~~~gi~~~~gg-----------Ris~~~~~~e~i~~~~~~l~~~  402 (407)
                      |.|..+               ..+ + +.+||++.||++.||.           |.++..  .. + ..+++++++
T Consensus       395 Y~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp--~~-~-~~i~~~~~f  466 (475)
T KOG0258|consen  395 YLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILP--PG-L-EIIEKFKKF  466 (475)
T ss_pred             eecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecC--ch-h-HHHHHHHHH
Confidence            999743               223 3 5689999999999982           777664  22 4 666666654

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=2.2e-29  Score=214.74  Aligned_cols=361  Identities=16%  Similarity=0.152  Sum_probs=253.4

Q ss_pred             chhhhhHhhhh-cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcc---ccccccCCCCCCcHHHHHHHHHHHhCCC
Q 015435           17 PILGVTVAYNK-DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND---QSRVKEYLPIVGLVDFNKLSAKLILGAD   92 (407)
Q Consensus        17 ~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~y~~~~g~~~l~~~~a~~~~~~~   92 (407)
                      .|..+|..+.. -..+..|.|+.|.|   .--|-.....+...+.+..+   .....+|+.++|...+.+++++.+...+
T Consensus        15 Gi~~lMdDl~d~Lrt~g~imLggGNP---a~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~y   91 (417)
T COG3977          15 GITQLMDDLNDGLRTPGAIMLGGGNP---ARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREY   91 (417)
T ss_pred             hHHHHHHHHHhhccCCCceeeCCCCc---ccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHh
Confidence            46777777763 23356899997764   22122223333333333311   1345689999999999999999999989


Q ss_pred             CCCCCCCceEEeecCCcccHHHHHHHHHHhh-cCCC--eEEec-CCCCCChHHHHhhcCceeeE---EEeecCCC---CC
Q 015435           93 SPAIKDNRVTTVQCLSGTGSLRVGAEFLARH-YHQL--TIYIP-QPTWGNHPKVFTLAGLSVKT---YRYYDPAT---RG  162 (407)
Q Consensus        93 ~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~-~~gd--~Vi~~-~p~y~~~~~~~~~~G~~~~~---v~~~~~~~---~~  162 (407)
                      +..+++.||.+  |+|++.+...++.+...- ..|+  +|+.| .|.|.+|.++.-.-..=|..   +.+ .+.+   +.
T Consensus        92 gwnit~~NIal--TnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel-~~~g~FKY~  168 (417)
T COG3977          92 GWNITAQNIAL--TNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIEL-LPAGQFKYH  168 (417)
T ss_pred             CCCCccceeee--cCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCccc-ccccceeec
Confidence            99999999999  999999998886554322 2454  46666 59999997754321111111   111 1111   34


Q ss_pred             cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      +|++.+.-  .  .++.++++ +.|.||||.+++.+++.+|.++|++||+.+|.|.+|..-..+=.-.+..     .-..
T Consensus       169 vDF~~l~i--~--e~~g~ic~-SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~-----~~w~  238 (417)
T COG3977         169 VDFEHLHI--G--ESTGAICV-SRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDAT-----PLWN  238 (417)
T ss_pred             cCHHHccc--c--cccceEEe-cCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceeccccc-----ccCC
Confidence            56666553  2  45777777 9999999999999999999999999999999999996322110100111     1235


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      ++++.+.|+|| .|+||.|+|-+  ++.     +++.+.+.++.......+..+++.++..+++..++...-.   +..|
T Consensus       239 ~NiilC~SLSK-~GLPG~R~GIi--Ian-----e~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlse---qVIr  307 (417)
T COG3977         239 ENIILCMSLSK-LGLPGSRCGII--IAN-----EKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSE---QVIR  307 (417)
T ss_pred             CCEEEEeehhh-cCCCCcceeEE--Ecc-----HHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHH---Hhhh
Confidence            79999999999 58999999999  566     7788888877776777899999999999999876532211   1234


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec-----CCCHHHHHHhHhhccEEEcCCC-----------------
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT-----GLNSEQVAFMTKEYHIYMTSDG-----------------  380 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~gg-----------------  380 (407)
                      -.++.+.+...+.|+..-....+....|.|.+|.|+     +++.+.+.+.|++.|+.+.||.                 
T Consensus       308 PFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~  387 (417)
T COG3977         308 PFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCM  387 (417)
T ss_pred             HHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceE
Confidence            445555555555555431122377789999999997     4477888888999999999982                 


Q ss_pred             eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          381 RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       381 Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      |+++.. +++.++..+.+|.+.+++
T Consensus       388 Rmn~~~-~~~~ie~Gva~lae~ve~  411 (417)
T COG3977         388 RMNYVP-EPEKIEKGVAILAEEVER  411 (417)
T ss_pred             EEecCC-CHHHHHHHHHHHHHHHHH
Confidence            999986 889999999999988765

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.97  E-value=1.3e-27  Score=228.68  Aligned_cols=327  Identities=15%  Similarity=0.135  Sum_probs=218.8

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCC---Cc----HHHHHHHHHHHhCCCCCCCCCCce
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIV---GL----VDFNKLSAKLILGADSPAIKDNRV  101 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~---g~----~~l~~~~a~~~~~~~~~~~~~~~i  101 (407)
                      ++.++|||+.|.|   .|.+.++++++++.+.+.  . ...+|+++.   |.    .++++++++++ +.       +++
T Consensus        36 ~g~~~i~~~~~~~---lg~~~~~~v~~~~~~~~~--~-~~~~~~~s~~~~G~~~~~~~le~~ia~~~-g~-------~~~  101 (393)
T TIGR01822        36 DGREVLNFCANNY---LGLSSHPDLIQAAKDALD--E-HGFGMSSVRFICGTQDIHKELEAKIAAFL-GT-------EDT  101 (393)
T ss_pred             CCceEEEeeCCCc---cccCCCHHHHHHHHHHHH--H-hCCCCCCcCcccCChHHHHHHHHHHHHHh-CC-------CcE
Confidence            5678999999986   455667788888888775  1 112455544   65    78899999988 53       578


Q ss_pred             EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC--C--C
Q 015435          102 TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--P--S  177 (407)
Q Consensus       102 ~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--~--~  177 (407)
                      ++  ++|+++|+..++  ...+.+||.|++++|.|+.+...++..+.+.+.++       ..|++++++.+.+.  +  +
T Consensus       102 ii--~~~~~~a~~~~~--~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~  170 (393)
T TIGR01822       102 IL--YASCFDANGGLF--ETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGAR  170 (393)
T ss_pred             EE--ECchHHHHHHHH--HHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCC
Confidence            88  889999999874  44578999999999999999998888887765442       26889999988742  1  4


Q ss_pred             CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH-cCCcEEEEEecCcccc
Q 015435          178 GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA-DGGECLVAQSYAKNMG  256 (407)
Q Consensus       178 ~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~  256 (407)
                      ++++++ ++++||||.+.+   +++|+++|++||++||+|++|.....+ ....  +...... ..+..++++|+||.++
T Consensus       171 ~~~v~~-~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~-~~~~--~~~~~~~~~~~~di~~~s~sK~l~  243 (393)
T TIGR01822       171 HRLIAT-DGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLG-PTGR--GSHELCGVMGRVDIITGTLGKALG  243 (393)
T ss_pred             ceEEEE-eCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcC-CCCC--chHHhcCCCCCCeEEEEEChHHhh
Confidence            445554 778999999764   888888999999999999998532221 1111  1111111 1245689999999864


Q ss_pred             ccCCCcceeEEeecChhhHHHHHHHHhhhhhcc-cC-CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          257 LYGERVGALSIVCKTEDVASRVESQLKLVIRPM-YS-SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       257 ~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                        |+|+||+  +++ +++.+.+..    ..... .. +.+...+.++..+++..       +..++.+++++++++++.+
T Consensus       244 --g~r~G~~--~~~-~~~~~~l~~----~~~~~~~~~~~~~~~~~a~~~al~~~-------~~~~~~~~~~~~~~~~l~~  307 (393)
T TIGR01822       244 --GASGGFT--TAR-KEVVELLRQ----RSRPYLFSNSLPPAVVGASIKVLEML-------EASNELRDRLWANTRYFRE  307 (393)
T ss_pred             --CCCcEEE--EeC-HHHHHHHHH----hCccceecCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHH
Confidence              7899998  454 544444333    21111 12 22333334444444311       2245677889999999999


Q ss_pred             HHHhcCCCCCcccccCCceeEEecCC---CHHHHHHhHhhccEEEcC-------CC----eEEecC-CCCCChhHHHHHH
Q 015435          335 ALSARGTPGDWSHIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTS-------DG----RISMAG-LSSKTVPHLTDAI  399 (407)
Q Consensus       335 ~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~-------gg----Ris~~~-~~~e~i~~~~~~l  399 (407)
                      .|++.+    +.+..+.+.++.+.-.   +.+.+...|.++||.+..       .+    ||+++. .+++++++++++|
T Consensus       308 ~L~~~g----~~~~~~~~~~~~i~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l  383 (393)
T TIGR01822       308 RMEAAG----FDIKPADHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAF  383 (393)
T ss_pred             HHHHcC----CCCCCCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence            998876    4544444444433211   233343334446998862       12    777654 4789999999999


Q ss_pred             HHHHHhhC
Q 015435          400 HAAVTRMG  407 (407)
Q Consensus       400 ~~~l~~~~  407 (407)
                      +++++++|
T Consensus       384 ~~~~~~~~  391 (393)
T TIGR01822       384 TRIGRELG  391 (393)
T ss_pred             HHHHHHhC
Confidence            99988764

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.96  E-value=4.2e-28  Score=229.75  Aligned_cols=341  Identities=12%  Similarity=0.072  Sum_probs=229.3

Q ss_pred             cCCCCeeeeeeeeeecCCCccc-cchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPL-VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      +.+-+.+.|..+.+......+. ......+..+++.  ..+ ..|++..|..+|++++++++ +.       +++++  |
T Consensus         8 ~~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~--~gd-~~Y~~~~g~~~Leeaia~~~-g~-------~~vv~--t   74 (431)
T cd00617           8 EAGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMM--LGD-EAYAGSKSFYDLEDAVQDLF-GF-------KHIIP--T   74 (431)
T ss_pred             HcCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHH--hCC-CccCCCCCHHHHHHHHHHHH-CC-------CeEEE--c
Confidence            3467888888886522111111 1133344445554  223 34999999999999999998 54       68888  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecC--------CCCCcChhhHHHHHHcC--C
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDP--------ATRGLNFQGLLEDLRAA--P  176 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~--------~~~~~d~~~l~~~i~~~--~  176 (407)
                      +||++|+.+++  ...+.+||.| +++|+|..+...+...|++++.+++..+        ..+.+|++++++.+++.  .
T Consensus        75 ~~Gt~Al~la~--~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~  151 (431)
T cd00617          75 HQGRGAENILF--SILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAE  151 (431)
T ss_pred             CCHHHHHHHHH--HHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCC
Confidence            99999999984  4458899987 6899999999999999999999998422        22459999999999743  1


Q ss_pred             CCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeeccccccc--cCC---CCCchhHHHHHHHHcCCcEEEEEe
Q 015435          177 SGAIVLLHACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGF--ASG---SLDADAQSVRMFVADGGECLVAQS  250 (407)
Q Consensus       177 ~~~~v~i~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~--~~~---~~~~~~~~~~~~~~~~~~~i~~~s  250 (407)
                      +++++++ ++|+||+ |..++.+++++|.++|++||++||+|++....  .+.   +......++..      .++.++|
T Consensus       152 ~~~~I~v-~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~e------i~~e~~s  224 (431)
T cd00617         152 NIPYIVL-TITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAE------IAREMFS  224 (431)
T ss_pred             CccEEEE-ECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHH------HHHHhhc
Confidence            2455666 8999998 99999999999999999999999999994321  110   00001112221      1345677


Q ss_pred             cCccccccCCC------cceeEEeecChhhHHHHHHHHhhhhhcccCCC-ChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          251 YAKNMGLYGER------VGALSIVCKTEDVASRVESQLKLVIRPMYSSP-PIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       251 ~sK~~~~~G~r------~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ++|.+.++|+|      .||+  +++++++.+++.............+. +...+.++...|+...      + .+.+.+
T Consensus       225 ~sd~~~mS~~K~~~~~~GG~i--~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~------~-~~~l~~  295 (431)
T cd00617         225 YADGCTMSAKKDGLVNIGGFL--ALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAV------E-EDYLRH  295 (431)
T ss_pred             cCCEEEEEeecCCCCccceEE--EeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcc------c-HHHHHH
Confidence            88888878777      4577  67766666654432211111111122 2222233332443211      1 122334


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC------------H-HHHHHhHhhccEEEcCC-----------
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN------------S-EQVAFMTKEYHIYMTSD-----------  379 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~l~~~gi~~~~g-----------  379 (407)
                      +++ +++++.+.|++.|    +.+..|.|++++|++..            . .++.+++++.||.+..-           
T Consensus       296 ~~~-~r~~l~~~L~~~G----~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~  370 (431)
T cd00617         296 RVE-QVRYLGDRLDEAG----VPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNT  370 (431)
T ss_pred             HHH-HHHHHHHHHHHCC----CCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCC
Confidence            444 5599999999998    78888999999998542            2 34668889999986431           


Q ss_pred             C----------eEEecC--CCCCChhHHHHHHHHHHHh
Q 015435          380 G----------RISMAG--LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       380 g----------Ris~~~--~~~e~i~~~~~~l~~~l~~  405 (407)
                      |          |+++..  .+.+.++.++++|..++++
T Consensus       371 ~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~  408 (431)
T cd00617         371 GENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER  408 (431)
T ss_pred             CcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence            1          888764  4778999999999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.96  E-value=5.4e-28  Score=230.27  Aligned_cols=337  Identities=14%  Similarity=0.116  Sum_probs=220.4

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+.++|||..|.+.++.| +.++.+.+++.+++.+-......| +.....++.+.+++++ +.       +++++  ++
T Consensus        24 ~~g~~~id~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g~-------~~~~~--~~   91 (379)
T TIGR00707        24 VNGKEYLDFVAGIAVNSLG-HAHPKLVEALKEQLEKLVHVSNLY-YTEPQEELAEKLVEHS-GA-------DRVFF--CN   91 (379)
T ss_pred             CCCCEEEEcCcchhhccCC-CCCHHHHHHHHHHHhhcccccccc-CCHHHHHHHHHHHhhC-CC-------CEEEE--eC
Confidence            3568999999987655566 555677777777775111111223 3344666777777765 42       58999  99


Q ss_pred             CcccHHHHHHHHHHhhc-----CCCeEEecCCCCCChHHHHhhcCceeeE----EEeecCCCCC--cChhhHHHHHHcCC
Q 015435          108 SGTGSLRVGAEFLARHY-----HQLTIYIPQPTWGNHPKVFTLAGLSVKT----YRYYDPATRG--LNFQGLLEDLRAAP  176 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~-----~gd~Vi~~~p~y~~~~~~~~~~G~~~~~----v~~~~~~~~~--~d~~~l~~~i~~~~  176 (407)
                      ||++++.+++.++....     ++|+|++++|+|+.+.......+.....    .++..+....  .|++++++.+.  +
T Consensus        92 sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~  169 (379)
T TIGR00707        92 SGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAID--D  169 (379)
T ss_pred             CcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhh--h
Confidence            99999999976554322     3799999999999887776655543321    2221111111  17899999887  4


Q ss_pred             CCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          177 SGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      +++++++ ++++||+|.. ++.+++++|.++|+++|+++|+||+|.++++.+   ...+.... ....++   .+|||.+
T Consensus       170 ~~~~v~~-~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g---~~~~~~~~-~~~~d~---~t~sK~~  241 (379)
T TIGR00707       170 ETAAVIV-EPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG---KFFAYEHY-GIEPDI---ITLAKGL  241 (379)
T ss_pred             CeeEEEE-EccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---hhhhHHhc-CCCCCE---EEEcccc
Confidence            5667777 5557777764 789999999999999999999999998887643   11222222 222333   3689999


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDA  335 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (407)
                      + +|+|+||+  +++ +    ++.+.+.........+.++++|.++.++++...        ....+++++++++++.+.
T Consensus       242 ~-~G~riG~~--~~~-~----~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~--------~~~~~~~~~~~~~~~~~~  305 (379)
T TIGR00707       242 G-GGVPIGAT--LAK-E----EVAEAFTPGDHGSTFGGNPLACAAALAVLEVIE--------KERLLENVKEKGDYFKER  305 (379)
T ss_pred             c-CCcccEEE--EEc-H----HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHH
Confidence            9 99999999  565 3    355545443333344678888888887775321        123456666777777777


Q ss_pred             HHhcCCCCCcccccCCceeEEecCC--CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHHHHH
Q 015435          336 LSARGTPGDWSHIIKQIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       336 l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      |++.+....+....+ .|.+.|+.+  +...+.+.|.++||.+.|++    ||+++. .+++++++++++|++++
T Consensus       306 l~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~  379 (379)
T TIGR00707       306 LEELGKNYPNKEVRG-KGLMLGIELEAPCKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEAI  379 (379)
T ss_pred             HHHHHhhCCCCcccc-CceEEEEEecCcHHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            765532111222223 455555544  34455555677899999865    888643 58899999999998763

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.96  E-value=4.2e-28  Score=232.30  Aligned_cols=338  Identities=13%  Similarity=0.150  Sum_probs=217.1

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      .+++++|||..|.+..+.| +..+.+.+++.+++. ...  +  .......++++++++++....+    .+++++  |+
T Consensus        36 ~dg~~~iD~~~g~~~~~lG-~~~p~v~~a~~~~~~-~~~--~--~~~~~~~~~~~~la~~l~~~~~----~~~v~~--~~  103 (396)
T PRK02627         36 DDGKEYLDFLAGIAVNNLG-HCHPKLVEAIQEQAA-KLI--H--TSNLYYIEPQEELAEKLVELSG----MDKVFF--CN  103 (396)
T ss_pred             CCCCEEEECCccHHhccCC-CCCHHHHHHHHHHHh-hcc--c--cccccCCHHHHHHHHHHHhhcC----CCEEEE--CC
Confidence            4678999999997755556 544566667766664 111  1  1111224667777777744322    279999  99


Q ss_pred             CcccHHHHHHHHHHhhcCC-----CeEEecCCCCCChHHHHhhcCceeeE-EEeecCCCCCc------ChhhHHHHHHcC
Q 015435          108 SGTGSLRVGAEFLARHYHQ-----LTIYIPQPTWGNHPKVFTLAGLSVKT-YRYYDPATRGL------NFQGLLEDLRAA  175 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~g-----d~Vi~~~p~y~~~~~~~~~~G~~~~~-v~~~~~~~~~~------d~~~l~~~i~~~  175 (407)
                      ||++|++++++++......     ++|++..++|.++.......+..... .+. .+...++      |++++++.+.  
T Consensus       104 gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~l~~~i~--  180 (396)
T PRK02627        104 SGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGF-EPLVEGFIYVPFNDIEALKAAIT--  180 (396)
T ss_pred             CcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccC-CCCCCCceEeCCCCHHHHHHhcC--
Confidence            9999999997765443321     78999999998876655443322211 000 0101122      8899999885  


Q ss_pred             CCCcEEEEecCCCCCCC-CCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435          176 PSGAIVLLHACAHNPTG-VDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN  254 (407)
Q Consensus       176 ~~~~~v~i~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
                      ++++++++ .+++|||| ..++++.+++|.++|++||++||+||+|.++.+.+.   ..+...+ ....+   +.+|||.
T Consensus       181 ~~~~~vii-~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~---~~~~~~~-~~~pd---i~t~sK~  252 (396)
T PRK02627        181 DKTAAVML-EPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK---LFAYQHY-GIEPD---IMTLAKG  252 (396)
T ss_pred             CCeEEEEE-ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc---eeeehhc-CCCCC---EEEEcch
Confidence            55677777 66799999 688999999999999999999999999998876541   1222111 11222   3469999


Q ss_pred             ccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          255 MGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       255 ~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                      ++ +|+|+||+  +++     +.+.+.+.......+++.+++.|.++.++++...      .  +...++++++.+.+.+
T Consensus       253 ~~-~G~rig~~--~~~-----~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~------~--~~~~~~~~~~~~~~~~  316 (396)
T PRK02627        253 LG-GGVPIGAV--LAK-----EKVADVFTPGDHGSTFGGNPLACAAALAVIEIIE------E--EGLLENAAEVGEYLRA  316 (396)
T ss_pred             hh-CCcccEEE--EEc-----HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHh------h--ccHHHHHHHHHHHHHH
Confidence            99 99999999  566     3455545433334455788889999888886432      0  1233444444555555


Q ss_pred             HHHhcCCCC-CcccccCCceeEEecCC--CHHH-HHHhHhhccEEEcCCC----eEEec-CCCCCChhHHHHHHHHHHHh
Q 015435          335 ALSARGTPG-DWSHIIKQIGMFTFTGL--NSEQ-VAFMTKEYHIYMTSDG----RISMA-GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       335 ~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~-~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~~~~~~l~~~l~~  405 (407)
                      .|.++.... .+....+ .|.+.|+.+  +... ...+++ +||.+.|++    ||+++ ..+++++++++++|++++++
T Consensus       317 ~l~~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~l~~-~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~  394 (396)
T PRK02627        317 KLRELLEKYPGIKEVRG-LGLMIGIELDRPAAEIVKKALE-KGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLKE  394 (396)
T ss_pred             HHHHHHHhCCCeeeecc-CcEEEEEEecCcHHHHHHHHHH-CCeEEeecCCCEEEEECCcccCHHHHHHHHHHHHHHHHh
Confidence            444431000 0222223 456666654  3443 445555 699999865    88764 35889999999999999876


Q ss_pred             h
Q 015435          406 M  406 (407)
Q Consensus       406 ~  406 (407)
                      +
T Consensus       395 ~  395 (396)
T PRK02627        395 L  395 (396)
T ss_pred             h
Confidence            4

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.96  E-value=3.3e-28  Score=232.04  Aligned_cols=340  Identities=14%  Similarity=0.083  Sum_probs=217.0

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...+++++||..|....+.| ..++.+++++.+++. ...............++.+++++.. .       .+++++  +
T Consensus        27 d~dG~~~lD~~~g~~~~~lG-h~~p~v~~a~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~-~-------~~~v~~--~   94 (389)
T PRK01278         27 DEDGERYLDFASGIAVNSLG-HAHPHLVEALKEQAE-KLWHVSNLYRIPEQERLAERLVENS-F-------ADKVFF--T   94 (389)
T ss_pred             ECCCCEEEECCccHhhccCC-CCCHHHHHHHHHHHH-hcCccccccCChHHHHHHHHHHhhC-C-------CCEEEE--c
Confidence            44678999999986655567 567788888888875 1111111111223344555555433 1       268999  9


Q ss_pred             CCcccHHHHHHHHHHhh--cCCC----eEEecCCCCCChHHHHhhcCceeeEEEeec--CCCC----CcChhhHHHHHHc
Q 015435          107 LSGTGSLRVGAEFLARH--YHQL----TIYIPQPTWGNHPKVFTLAGLSVKTYRYYD--PATR----GLNFQGLLEDLRA  174 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~--~~gd----~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~--~~~~----~~d~~~l~~~i~~  174 (407)
                      +||++|++.+++++..+  .+||    +|++.+++|+++.......+......+...  ..+.    -.|++.+++.+. 
T Consensus        95 ~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-  173 (389)
T PRK01278         95 NSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAIT-  173 (389)
T ss_pred             CCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhC-
Confidence            99999999998776543  3565    899999999998877765544332221100  0111    148899999886 


Q ss_pred             CCCCcEEEEecCCCCCCC-CCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCc
Q 015435          175 APSGAIVLLHACAHNPTG-VDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAK  253 (407)
Q Consensus       175 ~~~~~~v~i~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  253 (407)
                       ++++++++ ..++||+| .+++.+++++|+++|++||+++|+||+|.++.+.+.   ......+ ....+   +.++||
T Consensus       174 -~~~~aviv-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~~-~~~pd---i~t~sK  244 (389)
T PRK01278        174 -PNTAAILI-EPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK---LFAHEWA-GVTPD---IMAVAK  244 (389)
T ss_pred             -CCeEEEEE-ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc---ceeeccc-CCCCC---EEEEeh
Confidence             45677777 56688888 789999999999999999999999999998876542   1111111 11112   357999


Q ss_pred             cccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 015435          254 NMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLF  333 (407)
Q Consensus       254 ~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (407)
                      .++ +|+|+||+  +++     +++.+.+.......+.+.+++.|.++.+.++...      +  ....++++++.+++.
T Consensus       245 ~l~-~G~~ig~~--~~~-----~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~------~--~~~~~~~~~~~~~l~  308 (389)
T PRK01278        245 GIG-GGFPLGAC--LAT-----EEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVIL------A--PGFLDNVQRMGLYLK  308 (389)
T ss_pred             hcc-CCcceEEE--EEc-----HHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHh------h--hHHHHHHHHHHHHHH
Confidence            999 89999999  576     4445545444444555788888888877775321      0  112233334444444


Q ss_pred             HHHHhcC--CCCCcccccCCceeEEecCC--CHH-HHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHHHHH
Q 015435          334 DALSARG--TPGDWSHIIKQIGMFTFTGL--NSE-QVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       334 ~~l~~~~--~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      +.++.+.  .+..+....+ .|++.++.+  +.+ +..++++ +||.+.|++    ||+++. .+++++++++++|++++
T Consensus       309 ~~l~~l~~~~~~~~~~v~g-~G~~~~i~~~~~~~~~~~~l~~-~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~~~l  386 (389)
T PRK01278        309 QKLEGLVDRFPDVIEEVRG-KGLLLGLKCVVPNRDLVQALRD-EGLLTVGAGDNVVRLLPPLIITEEEIDEALERLERAA  386 (389)
T ss_pred             HHHHHHHhhCCCceeeEec-ccEEEEEEEecCHHHHHHHHHH-CCeEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence            4444321  1101222333 445555433  333 4455555 599999875    887543 58899999999999998


Q ss_pred             Hhh
Q 015435          404 TRM  406 (407)
Q Consensus       404 ~~~  406 (407)
                      +++
T Consensus       387 ~~~  389 (389)
T PRK01278        387 ESL  389 (389)
T ss_pred             HhC
Confidence            764

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.96  E-value=1.3e-27  Score=229.05  Aligned_cols=334  Identities=14%  Similarity=0.110  Sum_probs=215.8

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccc-cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR-VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      .++++|||+.|.+   -|.+.++.+.+++.+.+. .... ...|....|..++++++++++....+.   +++|++  |+
T Consensus        40 ~g~~~i~l~~~~~---~~~~~~~~i~~a~~~~~~-~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~--ts  110 (397)
T PRK06939         40 DGKEVINFCANNY---LGLANHPELIAAAKAALD-SHGFGMASVRFICGTQDLHKELEEKLAKFLGT---EDAILY--SS  110 (397)
T ss_pred             CCCeEEEeeccCc---cccCCCHHHHHHHHHHHH-HcCCCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEE--cC
Confidence            5788999999874   244556677777777665 1111 112223467777777777777443332   256766  77


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC--C-CCcEEEEe
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--P-SGAIVLLH  184 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--~-~~~~v~i~  184 (407)
                      | ++++..++  ...+.+||.|++++|+|+.+...+..+|.+++.++.       .|++++++.+.+.  + .+..++++
T Consensus       111 G-~~a~~~~~--~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~  180 (397)
T PRK06939        111 C-FDANGGLF--ETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIAT  180 (397)
T ss_pred             h-HHHHHHHH--HHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEE
Confidence            6 77888774  444789999999999999999999999998877754       4788888887631  1 12334444


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcce
Q 015435          185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGA  264 (407)
Q Consensus       185 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  264 (407)
                      .+.+||||.   .+++++|+++|++||++||+||+|...... .... ..........+..++++|+||.++  |+|+||
T Consensus       181 ~~v~~~~G~---~~~~~~l~~la~~~~~~li~De~~~~g~~~-~~~~-~~~~~~~~~~~~~i~~~S~sK~~~--g~r~G~  253 (397)
T PRK06939        181 DGVFSMDGD---IAPLPEICDLADKYDALVMVDDSHAVGFVG-ENGR-GTVEHFGVMDRVDIITGTLGKALG--GASGGY  253 (397)
T ss_pred             ecCcCCCCC---cCCHHHHHHHHHHhCCEEEEECcccccCcC-CCCC-CHHHHcCCCCCCcEEEEECHHHhC--ccCceE
Confidence            667899998   457899999999999999999999532221 1101 111111111235699999999984  569999


Q ss_pred             eEEeecChhhHHHHHHHHhhhhhcc-cCCC-ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015435          265 LSIVCKTEDVASRVESQLKLVIRPM-YSSP-PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP  342 (407)
Q Consensus       265 ~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  342 (407)
                      +  +++ +++.+.    +....... ..++ +...+.++..+++..       ...++.+++++++++++.+.|++.+  
T Consensus       254 v--~~~-~~~~~~----l~~~~~~~~~~~~~~~~~~~a~~~al~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~--  317 (397)
T PRK06939        254 T--AGR-KEVIDW----LRQRSRPYLFSNSLAPAIVAASIKVLELL-------EESDELRDRLWENARYFREGMTAAG--  317 (397)
T ss_pred             E--EeC-HHHHHH----HHHhCccccccCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcC--
Confidence            8  555 444443    33322211 1122 233334444333321       1124667889999999999998886  


Q ss_pred             CCcccccCCceeEEec-C--CCHH-HHHHhHhhccEEEcCC-------C----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          343 GDWSHIIKQIGMFTFT-G--LNSE-QVAFMTKEYHIYMTSD-------G----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       343 ~~~~~~~~~~~~~~~~-~--~~~~-~~~~~l~~~gi~~~~g-------g----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                        +....+.++++.+. +  .+.+ ++..+++ +||.+.++       +    |++++. .+++++++++++|+++++++
T Consensus       318 --~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~  394 (397)
T PRK06939        318 --FTLGPGEHPIIPVMLGDAKLAQEFADRLLE-EGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL  394 (397)
T ss_pred             --CCcCCCCCCEEEEEECCHHHHHHHHHHHHH-CCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence              55555666666443 2  1233 3455555 59988642       1    887754 58899999999999999876


Q ss_pred             C
Q 015435          407 G  407 (407)
Q Consensus       407 ~  407 (407)
                      |
T Consensus       395 ~  395 (397)
T PRK06939        395 G  395 (397)
T ss_pred             C
Confidence            5

>PLN02822 serine palmitoyltransferase

Probab=99.96  E-value=1e-27  Score=232.31  Aligned_cols=332  Identities=14%  Similarity=0.071  Sum_probs=224.5

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc----cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ----SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      +++++|||++|.+   .+...++++.+++.+++.+-.    .....|++..++.++++++++++ +.      ++.|++ 
T Consensus       107 ~G~~~id~~s~~~---lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~-~~------~~~i~~-  175 (481)
T PLN02822        107 NGKDVVNFASANY---LGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFL-GT------PDSILY-  175 (481)
T ss_pred             CCceEEEeECCCc---CCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHh-CC------CCEEEE-
Confidence            4688999999976   344567788888888886211    11123666777999999999999 42      367888 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC----CCCcE
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA----PSGAI  180 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~----~~~~~  180 (407)
                       ++|++ ++..+  +...+++||.|++....|..+...+...|.+++.++.++.+    +++...+.+...    ++++.
T Consensus       176 -s~G~~-a~~sa--i~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~----~l~~~l~~~~~~~~~~~~~~~  247 (481)
T PLN02822        176 -SYGLS-TIFSV--IPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDME----SLRNTLEKLTAENKRKKKLRR  247 (481)
T ss_pred             -CCHHH-HHHHH--HHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHH----HHHHHHHHHhhhhcccCCCcE
Confidence             87776 45555  34557799999988777777777888889999998774222    222222222211    22333


Q ss_pred             EEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-HcCCcEEEEEecCccccccC
Q 015435          181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-ADGGECLVAQSYAKNMGLYG  259 (407)
Q Consensus       181 v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G  259 (407)
                      ++++..++|+||.+.+   +++|+++|++||++||+||+|....++.......  ..+. ...+..+++.||||.+|++|
T Consensus       248 ~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~--e~~~v~~~~~dii~~s~sKalg~~G  322 (481)
T PLN02822        248 YIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLS--EHFGVPIEKIDIITAAMGHALATEG  322 (481)
T ss_pred             EEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCChH--HHcCCCCCCCeEEEecchhhhhhCC
Confidence            4444888999999887   7888899999999999999998555442111111  1111 11245688999999999888


Q ss_pred             CCcceeEEeecChhhHHHHHHHHhhhhhcccCC--CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          260 ERVGALSIVCKTEDVASRVESQLKLVIRPMYSS--PPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALS  337 (407)
Q Consensus       260 ~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  337 (407)
                         ||+  +++ ++    +.+.++......+++  .|+..+.++..+++..       +...+.+++++++++++.+.|+
T Consensus       323 ---G~i--~g~-~~----ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l-------~~~~~~~~~l~~~~~~l~~~L~  385 (481)
T PLN02822        323 ---GFC--TGS-AR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-------EDNPSVLAKLKENIALLHKGLS  385 (481)
T ss_pred             ---eEE--EcC-HH----HHHHHHhcCCceeeccccCHHHHHHHHHHHHHH-------HhCHHHHHHHHHHHHHHHHHHH
Confidence               888  454 44    444444333333333  3466667776666432       1124677889999999999998


Q ss_pred             hc-CCCCCcccccCCceeEEecCCC-------------HHHHHHhHhhccEEEcCC------------C-eEEecC-CCC
Q 015435          338 AR-GTPGDWSHIIKQIGMFTFTGLN-------------SEQVAFMTKEYHIYMTSD------------G-RISMAG-LSS  389 (407)
Q Consensus       338 ~~-~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~gi~~~~g------------g-Ris~~~-~~~  389 (407)
                      +. |    +.+..+.++++.++.+.             .+++.++++++||.+.++            . ||+++. +++
T Consensus       386 ~~~g----~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~  461 (481)
T PLN02822        386 DIPG----LSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTE  461 (481)
T ss_pred             hcCC----cccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCH
Confidence            86 4    66665566677666442             234667777789999864            1 887664 588


Q ss_pred             CChhHHHHHHHHHHHh
Q 015435          390 KTVPHLTDAIHAAVTR  405 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~  405 (407)
                      ++|++++++|+++++.
T Consensus       462 edI~~~~~~l~~~~~~  477 (481)
T PLN02822        462 SDILKASESLKRVAAS  477 (481)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998875

>PRK10534 L-threonine aldolase; Provisional

Probab=99.96  E-value=1.1e-27  Score=223.85  Aligned_cols=316  Identities=13%  Similarity=0.060  Sum_probs=206.6

Q ss_pred             eeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHH
Q 015435           34 LNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSL  113 (407)
Q Consensus        34 i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~  113 (407)
                      |||++.+      +|.|++.+.+++....   .....|+|.....+|++++++++ +.       +.+++  ++||++++
T Consensus         2 ~~~~~~~------~~~p~~~~~~a~~~~~---~~~~~Y~~~~~~~~L~~~la~~~-g~-------~~~~v--~~~g~~a~   62 (333)
T PRK10534          2 IDLRSDT------VTRPSRAMLEAMMAAP---VGDDVYGDDPTVNALQDYAAELS-GK-------EAALF--LPTGTQAN   62 (333)
T ss_pred             ccccccc------CCCCCHHHHHHHHhcc---CCCcccCCCHHHHHHHHHHHHHh-CC-------CeEEE--eCchHHHH
Confidence            5677554      2556666655554443   23456888889999999999998 53       45677  88888888


Q ss_pred             HHHHHHHHhhcCCCeEEecCCCCCC-hHHH-HhhcC-ceeeEEEeecCCCCCcChhhHHHHHHcCC----CCcEEEEecC
Q 015435          114 RVGAEFLARHYHQLTIYIPQPTWGN-HPKV-FTLAG-LSVKTYRYYDPATRGLNFQGLLEDLRAAP----SGAIVLLHAC  186 (407)
Q Consensus       114 ~~~~~~~~~~~~gd~Vi~~~p~y~~-~~~~-~~~~G-~~~~~v~~~~~~~~~~d~~~l~~~i~~~~----~~~~v~i~~~  186 (407)
                      .+++  ...+.+||+|+++.|+|.. +... ....| .+++.++.  ..++.+|++++++++....    +++++++ +|
T Consensus        63 ~~~l--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l-~n  137 (333)
T PRK10534         63 LVAL--LSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDA--AADGTLPLDKVAAKIKPDDIHFARTRLLSL-EN  137 (333)
T ss_pred             HHHH--HHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecC--CCCCCCCHHHHHHhhcccCcCcccceEEEE-ec
Confidence            7774  4457799999998888753 3221 23333 67777776  3357889999999886210    3566666 65


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      |  |||.+++.+++++|+++|++|+++|++||+|.........   .....+....+.++  .||||.|+++   +||. 
T Consensus       138 p--~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~---~~~~~~~~~~~~~~--~s~SK~~~~~---~G~~-  206 (333)
T PRK10534        138 T--HNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYG---CELKEITQYCDSFT--ICLSKGLGTP---VGSL-  206 (333)
T ss_pred             C--CCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcC---CCHHHHHhcCCEEE--EEeEcCCCCc---ccce-
Confidence            4  4699999999999999999999999999997622110000   01111222223333  4899988754   7853 


Q ss_pred             EeecChhhHHHHHHHHhhhhhcccCC--CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435          267 IVCKTEDVASRVESQLKLVIRPMYSS--PPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD  344 (407)
Q Consensus       267 ~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  344 (407)
                       ++.++++.+    .+......+..+  .+.+.+.++...+++.          .+..++..++++++.+.|++.|    
T Consensus       207 -~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~----------~~~~~~~~~~r~~l~~~L~~~g----  267 (333)
T PRK10534        207 -LVGNRDYIK----RARRWRKMTGGGMRQAGILAAAGLYALKHN----------VARLQEDHDNAAWLAEQLREAG----  267 (333)
T ss_pred             -EEcCHHHHH----HHHHHHHHhCCchhhHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHHhCC----
Confidence             244555444    444444332212  2234455544444321          1222234456789999999887    


Q ss_pred             cccccCCceeEEecCCC---HHHHHHhHhhccEEEcCCC--eEEec-CCCCCChhHHHHHHHHHHH
Q 015435          345 WSHIIKQIGMFTFTGLN---SEQVAFMTKEYHIYMTSDG--RISMA-GLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       345 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~gg--Ris~~-~~~~e~i~~~~~~l~~~l~  404 (407)
                      +.+.++ .+.|.|+.+.   .+.+.++|.++||.+.++.  |++.. .++++++++++++|++++.
T Consensus       268 ~~~~~~-~~nfv~~~~~~~~~~~~~~~l~~~gi~v~~~~~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        268 ADVMRQ-DTNMLFVRVGEEQAAALGEYMRERNVLINASPIVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             CccCCC-CceEEEEECCchhHHHHHHHHHHcCeeecCCceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            666666 4668777653   4556778888999999986  88653 2588999999999998765

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.96  E-value=5.2e-27  Score=223.97  Aligned_cols=333  Identities=14%  Similarity=0.120  Sum_probs=219.2

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      +++++|||+.|.+   .|.+.++.+.+++.+++.+.......|.+..|..++++.+++++....+.   ++.+++  ++|
T Consensus        31 ~g~~~id~~~~~~---~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~~--~sG  102 (385)
T TIGR01825        31 NGKEVINLSSNNY---LGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALVF--QSG  102 (385)
T ss_pred             CCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEEE--CcH
Confidence            4689999999863   35455667777777766511212345777789899999999888544332   245666  666


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC--CCcEEEEecC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP--SGAIVLLHAC  186 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~--~~~~v~i~~~  186 (407)
                       ++++..++  ...+.+||.|++++|+|..+...+...|.++..++       .+|++++++.+.+..  +++++ ++++
T Consensus       103 -~~a~~~a~--~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v-~~~~  171 (385)
T TIGR01825       103 -FNTNQGVL--SALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLI-VTDG  171 (385)
T ss_pred             -HHHHHHHH--HHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEE-EEec
Confidence             66666663  44478999999999999999888888888776653       368888888876432  34555 4488


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      ++||||.+.+   +++|+++|++||+++|+||+|..+.++.....  ....+.-..+.++++.||||.++++|   ||+ 
T Consensus       172 v~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~-  242 (385)
T TIGR01825       172 VFSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRG--TVHHFGLEDKVDIQVGTLSKAIGVVG---GYA-  242 (385)
T ss_pred             CCcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCc--cHhhcCCCcCCcEEEEeccHHhhcCC---CEE-
Confidence            8999999765   78888889999999999999977654311111  11111112467899999999998665   888 


Q ss_pred             EeecChhhHHHHHHHHhhhhh-cccC-CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435          267 IVCKTEDVASRVESQLKLVIR-PMYS-SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD  344 (407)
Q Consensus       267 ~v~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  344 (407)
                       ++ ++++.+.    +..... .... ..++..+.++..+++...      + ..+..++++++++++.+.|++.+    
T Consensus       243 -~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~al~~~~------~-~~~~~~~~~~~~~~l~~~L~~~g----  305 (385)
T TIGR01825       243 -AG-HKELIEY----LKNRARPFLFSTAQPPAVVAALAAAVDELQ------R-SPELMERLWDNTRFFKAGLGKLG----  305 (385)
T ss_pred             -ec-CHHHHHH----HHHhCccccccCCCCHHHHHHHHHHHHHHh------c-CHHHHHHHHHHHHHHHHHHHHcC----
Confidence             34 4444443    332222 1112 234555666666554221      1 12345667778999999998887    


Q ss_pred             cccccCCceeEEec-CC--CH-HHHHHhHhhccEEEcCC-------C----eEEec-CCCCCChhHHHHHHHHHHHhhC
Q 015435          345 WSHIIKQIGMFTFT-GL--NS-EQVAFMTKEYHIYMTSD-------G----RISMA-GLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       345 ~~~~~~~~~~~~~~-~~--~~-~~~~~~l~~~gi~~~~g-------g----Ris~~-~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      +++..+.+.++.+. +.  +. ++...+++ +||.+.++       |    |+++. ..+++++++++++|+++++.+|
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~~  383 (385)
T TIGR01825       306 YDTGGSETPITPVVIGDEKAAQEFSRRLFD-EGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKELG  383 (385)
T ss_pred             CCCCCCCCCEEEEEECCHHHHHHHHHHHHH-CCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            56555655544433 21  22 33455555 59988531       2    66654 2588999999999999998764

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.96  E-value=3.7e-27  Score=223.04  Aligned_cols=323  Identities=14%  Similarity=0.068  Sum_probs=210.1

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCC----CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL----PIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~----~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      .+.++|||+.|.+   .|.+.++++++++.+.+.........|.    ......++++++++++ +.      ++++++ 
T Consensus        14 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-~~------~~~i~~-   82 (360)
T TIGR00858        14 DGRRLLNFSSNDY---LGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWK-GT------EAALLF-   82 (360)
T ss_pred             CCceEEecccCCc---ccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHh-CC------CCEEEE-
Confidence            5689999999953   5644566777777776651111111121    1223566888888887 42      256666 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC--CCcEEE
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP--SGAIVL  182 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~--~~~~v~  182 (407)
                       ++| ++++..++  ...+.+||.|++++|+|..+...++..|.+++.++.       +|++++++.+.+..  ++.+++
T Consensus        83 -~~G-~~~~~~~l--~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~  151 (360)
T TIGR00858        83 -SSG-YLANVGVI--SALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIV  151 (360)
T ss_pred             -Cch-HHHHHHHH--HHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEE
Confidence             666 45554443  334679999999999999999999999999887753       58889999887432  344444


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV  262 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  262 (407)
                       +++++||||...   ++++|.++|+++|+++|+||+|..+.++........... ....+++++++||||.++++|   
T Consensus       152 -~~~~~~~~G~~~---~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~s~sK~~~~~g---  223 (360)
T TIGR00858       152 -TDGVFSMDGDIA---PLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFG-LKPEPVDIQVGTLSKALGSYG---  223 (360)
T ss_pred             -EeCCccCCCCCc---CHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcC-CCccCCcEEEEechhhhhccC---
Confidence             488999999865   478888889999999999999976554321111111110 112367899999999998766   


Q ss_pred             ceeEEeecChhhHHHHHHHHhhhhhcc--cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          263 GALSIVCKTEDVASRVESQLKLVIRPM--YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       263 G~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      ||+  +++ +++.+.    +.......  ..+++...+.++..+++..       ...++.+++++++++++.+.|++.+
T Consensus       224 G~~--~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~al~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~  289 (360)
T TIGR00858       224 AYV--AGS-QALIDY----LINRARTLIFSTALPPAVAAAALAALELI-------QEEPWRREKLLALIARLRAGLEALG  289 (360)
T ss_pred             cEE--EcC-HHHHHH----HHHhCccceecCCCCHHHHHHHHHHHHHH-------hhCHHHHHHHHHHHHHHHHHHHHcC
Confidence            888  454 443333    33222221  1234444444555555322       1234567899999999999999876


Q ss_pred             CCCCcccccCCceeEEecCCC----HHHHHHhHhhccEEEcCC-------C----eEEecC-CCCCChhHHHHHHH
Q 015435          341 TPGDWSHIIKQIGMFTFTGLN----SEQVAFMTKEYHIYMTSD-------G----RISMAG-LSSKTVPHLTDAIH  400 (407)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~~~~g-------g----Ris~~~-~~~e~i~~~~~~l~  400 (407)
                          +.+..+ ++.+.|+.+.    ...+.+.|.++||.+.++       |    ||+++. .+++++++++++|+
T Consensus       290 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       290 ----FTLMPS-CTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             ----CccCCC-CCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence                555544 4445655442    334445556689999641       2    898874 47899999988763

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PLN02721 threonine aldolase

Probab=99.96  E-value=4.5e-27  Score=221.82  Aligned_cols=327  Identities=14%  Similarity=0.148  Sum_probs=207.7

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      ..+++|+.+.+      +.|.+.+.+++.... .......|.  ....++++++++++ +.       +.+++  +++|+
T Consensus         5 ~~~~~~~~~~~------~~~~~~~~~a~~~~~-~~~~~~~~~--~~~~~l~~~la~~~-~~-------~~~~~--~~~Gs   65 (353)
T PLN02721          5 SRVVDLRSDTV------TKPTDAMRAAMANAE-VDDDVLGYD--PTALRLEEEMAKIF-GK-------EAALF--VPSGT   65 (353)
T ss_pred             hhhhhhhcccc------cCCCHHHHHHHHhcc-CCCcccCCC--HHHHHHHHHHHHHh-CC-------ceeEE--ecCcc
Confidence            36788998875      234444444444321 112223333  33789999999999 53       34667  77788


Q ss_pred             cHHHHHHHHHHhhc-CCCeEEecCCCCCChHH---HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-----CCCcEE
Q 015435          111 GSLRVGAEFLARHY-HQLTIYIPQPTWGNHPK---VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-----PSGAIV  181 (407)
Q Consensus       111 ~a~~~~~~~~~~~~-~gd~Vi~~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-----~~~~~v  181 (407)
                      +++.++  +...+. +||+|++++|+|.....   .....|.+++.+|.  ++++.+|++++++.+.+.     ++++++
T Consensus        66 ~a~~~~--l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~v  141 (353)
T PLN02721         66 MGNLIS--VLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKN--NEDGTMDLDAIEAAIRPKGDDHFPTTRLI  141 (353)
T ss_pred             HHHHHH--HHHHccCCCCeEEEcCccceehhcccchhhhcCceeEecCC--CcCCCcCHHHHHHHHHhccCCCCCcceEE
Confidence            887655  333455 89999999999865544   56788999999987  334678999999999742     356777


Q ss_pred             EEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435          182 LLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER  261 (407)
Q Consensus       182 ~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  261 (407)
                      ++.+.++||||++++.+++++|+++|++||+++|+|++|...... .  .......+....+  .++.|+||.++.   +
T Consensus       142 ~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~-~--~~~~~~~~~~~~d--~~~~s~sK~l~~---~  213 (353)
T PLN02721        142 CLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASV-A--LGVPVHRLVKAAD--SVSVCLSKGLGA---P  213 (353)
T ss_pred             EEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchh-h--hCCCHHHHhhhCC--EEEEecccccCC---c
Confidence            775667899999999999999999999999999999997522210 0  0011111222223  445579998873   3


Q ss_pred             cceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015435          262 VGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT  341 (407)
Q Consensus       262 ~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  341 (407)
                      +|++  +..++++.+.+.    .........+...++.++..+..       +.+..+.. ++..++++.+.+.|++++.
T Consensus       214 ~G~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~-~~~~~~~~~l~~~L~~~~~  279 (353)
T PLN02721        214 VGSV--IVGSKSFIRKAK----RLRKTLGGGMRQVGVLAAAALVA-------LQENVPKL-EDDHKKAKLLAEGLNQIKG  279 (353)
T ss_pred             eeeE--EecCHHHHHhHH----HHHHhcCCCeehhHHHHHHHHHH-------HHHHHHHH-HHHHHHHHHHHHHHHhCCC
Confidence            6774  355665544432    22222222222222222221111       11222322 3335667889999988742


Q ss_pred             CCCcc--cccCCceeEEecCC------CHHHHHHhHhhccEEEcCCC----eEEec-CCCCCChhHHHHHHHHHHHhh
Q 015435          342 PGDWS--HIIKQIGMFTFTGL------NSEQVAFMTKEYHIYMTSDG----RISMA-GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       342 ~~~~~--~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~~~~~~l~~~l~~~  406 (407)
                         +.  ...+.++ +.|+.+      +.+.+.+.|.++||.+.+++    |++++ ..+++++++++++|+++++.+
T Consensus       280 ---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~~  353 (353)
T PLN02721        280 ---LRVNVAAVETN-IVYFDITDGSRITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAALTL  353 (353)
T ss_pred             ---cEEecCCccce-EEEEEccCCccccHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHhhcC
Confidence               42  3344444 455433      34556655667999999986    99886 358899999999999988653

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.96  E-value=3.6e-27  Score=225.70  Aligned_cols=333  Identities=16%  Similarity=0.144  Sum_probs=221.4

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++++|||..|.+..+.| +.++.+++++.+++.+.......|.... ..++.+.+++++ +..    ..+++++  ++
T Consensus        40 ~dg~~~lD~~s~~~~~~lG-~~~p~v~~ai~~~~~~~~~~~~~~~~~~-~~~la~~l~~~~-~~~----~~~~v~~--~~  110 (398)
T PRK03244         40 VDGKEYLDLLGGIAVNALG-HAHPAVVEAVTRQLATLGHVSNLFATEP-QIALAERLVELL-GAP----EGGRVFF--CN  110 (398)
T ss_pred             CCCCEEEECCcCHhhccCC-CCCHHHHHHHHHHHHhccCccCccCCHH-HHHHHHHHHHhC-CCC----CCCEEEE--eC
Confidence            3578999999987655566 5456777777776651111123354322 346677777665 321    1368999  99


Q ss_pred             CcccHHHHHHHHHHhhcCC-CeEEecCCCCCChHHHHhh-cCc------------eeeEEEeecCCCCCcChhhHHHHHH
Q 015435          108 SGTGSLRVGAEFLARHYHQ-LTIYIPQPTWGNHPKVFTL-AGL------------SVKTYRYYDPATRGLNFQGLLEDLR  173 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~g-d~Vi~~~p~y~~~~~~~~~-~G~------------~~~~v~~~~~~~~~~d~~~l~~~i~  173 (407)
                      ||+++++.++++...  .| +.|+..+++|+++...... .|.            ++..+|.       .|++.+++.+.
T Consensus       111 sgsea~~~al~~~~~--~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~  181 (398)
T PRK03244        111 SGAEANEAAFKLARL--TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVD  181 (398)
T ss_pred             chHHHHHHHHHHHHH--HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhc
Confidence            999999999776644  44 5677778899877554332 221            2222221       37888988875


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCCHHH-HHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecC
Q 015435          174 AAPSGAIVLLHACAHNPTGVDPTLEQ-WEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA  252 (407)
Q Consensus       174 ~~~~~~~v~i~~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  252 (407)
                        ++.+++++ .+++||||.++++++ +++|.++|++||+++|+||+|.+|+..+   ..+..... ....++   .+||
T Consensus       182 --~~~~avii-ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g---~~~~~~~~-~~~pDi---~t~s  251 (398)
T PRK03244        182 --DDTAAVFL-EPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG---AWFAHQHD-GVTPDV---VTLA  251 (398)
T ss_pred             --CCeEEEEE-ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccc---hHHhhhhh-CCCCCE---EEEc
Confidence              45666666 778999999986654 9999999999999999999999887654   22221111 112232   3789


Q ss_pred             ccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 015435          253 KNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQL  332 (407)
Q Consensus       253 K~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (407)
                      |.++ +|+|+||+  +++     +++.+.+.......+++.+++++.++.+.|+...        -+...++++++++++
T Consensus       252 K~l~-~G~~ig~~--~~~-----~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--------~~~~~~~~~~~~~~l  315 (398)
T PRK03244        252 KGLG-GGLPIGAC--LAF-----GPAADLLTPGLHGSTFGGNPVACAAALAVLDTIA--------SEGLLENAERLGEQL  315 (398)
T ss_pred             hhhh-CCcccEEE--EEc-----HHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHH
Confidence            9999 89999999  566     3344444433333455778888998888876321        124456777788889


Q ss_pred             HHHHHhcCCCCCcccccCCceeEEecCCC---HHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHHHHHH
Q 015435          333 FDALSARGTPGDWSHIIKQIGMFTFTGLN---SEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       333 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~~l~  404 (407)
                      .+.|++++.+. +.... ..|.+.|+.+.   ...+.+.+.++||.+.+.+    |+++.. .+++|+++++++|+++++
T Consensus       316 ~~~L~~~~~~~-~~~v~-g~g~~~~i~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~  393 (398)
T PRK03244        316 RAGIEALGHPL-VDHVR-GRGLLLGIVLTAPVAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILD  393 (398)
T ss_pred             HHHHHhcCCCc-eeeEe-eccEEEEEEEeccHHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence            99998865321 11122 25566776553   3344555566899998754    888665 588999999999999987


Q ss_pred             hh
Q 015435          405 RM  406 (407)
Q Consensus       405 ~~  406 (407)
                      ++
T Consensus       394 ~~  395 (398)
T PRK03244        394 AA  395 (398)
T ss_pred             hc
Confidence            64

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.96  E-value=2.6e-26  Score=220.42  Aligned_cols=329  Identities=15%  Similarity=0.081  Sum_probs=212.8

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccc----c-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR----V-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      +++.++|+...+   ++...++.+++++.+++. ....    . ..|.......+|++++++++ +.      ++.+++ 
T Consensus        45 ~~~~~~~~sn~y---l~l~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~Le~~la~~~-g~------~~~i~~-  112 (410)
T PRK13392         45 PRRVTIWCSNDY---LGMGQHPDVIGAMVDALD-RYGAGAGGTRNISGTSHPHVLLERELADLH-GK------ESALLF-  112 (410)
T ss_pred             CceEEEEECCCc---cCCCCCHHHHHHHHHHHH-HcCCCCchhhhcccChHHHHHHHHHHHHHh-CC------CCEEEE-
Confidence            356889988776   454456677777777665 1111    1 11222234778999999988 43      244555 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC--CCCcEEE
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--PSGAIVL  182 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--~~~~~v~  182 (407)
                       ++ |++++..++..+....+||.|+++.+.|..+...++..|.++..++.       .|.+.+++.+...  +++++++
T Consensus       113 -~s-G~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~t~~v~  183 (410)
T PRK13392        113 -TS-GYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRH-------NDLADLEEQLASVDPDRPKLIA  183 (410)
T ss_pred             -Cc-HHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC-------CCHHHHHHHHHhccCCCCEEEE
Confidence             54 56777766433322347888888777777777778888988877643       1455566655432  3455655


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC-CcEEEEEecCccccccCCC
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG-GECLVAQSYAKNMGLYGER  261 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~s~sK~~~~~G~r  261 (407)
                      + ++|+||||.+.+   +++|.++|++||+++|+||+|....++.. .  .++....... ...++++|+||.||++|  
T Consensus       184 i-~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~-g--~g~~~~~~~~~~~div~~tlsK~~g~~G--  254 (410)
T PRK13392        184 F-ESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGAR-G--GGIAERDGLMDRIDMIQGTLAKAFGCLG--  254 (410)
T ss_pred             E-eCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCC-C--CchhhhccCCCCCcEEEEEChHhhhccc--
Confidence            5 999999999876   77888889999999999999984333211 1  1111111111 22488899999999887  


Q ss_pred             cceeEEeecChhhHHHHHHHHhhhhhcc--cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435          262 VGALSIVCKTEDVASRVESQLKLVIRPM--YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR  339 (407)
Q Consensus       262 ~G~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  339 (407)
                       ||+  ++ ++++.+    .+......+  +.+.++..+.++..+|+..       +.....++++.++++++.+.|++.
T Consensus       255 -G~~--~~-~~~~~~----~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~-------~~~~~~~~~~~~~~~~l~~~L~~~  319 (410)
T PRK13392        255 -GYI--AA-SADLID----FVRSFAPGFIFTTALPPAVAAGATAAIRHL-------KTSQTERDAHQDRVAALKAKLNAN  319 (410)
T ss_pred             -chh--hc-CHHHHH----HHHHhCcchhccCcCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHc
Confidence             888  34 454444    344333322  2234556677777777543       112345577888999999999988


Q ss_pred             CCCCCcccccCCceeE-EecCCC--H-HHHHHhHhhccEEEcCC-------C----eEEecC-CCCCChhHHHHHHHHHH
Q 015435          340 GTPGDWSHIIKQIGMF-TFTGLN--S-EQVAFMTKEYHIYMTSD-------G----RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       340 ~~~~~~~~~~~~~~~~-~~~~~~--~-~~~~~~l~~~gi~~~~g-------g----Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      |    +.+..+.++++ .+++..  . +...++++++||.+.+.       |    ||++.. .+++|+++++++|++++
T Consensus       320 g----~~~~~~~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~  395 (410)
T PRK13392        320 G----IPVMPSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIW  395 (410)
T ss_pred             C----CCCCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence            7    66666666665 344432  2 33445667789999753       2    888743 48899999999999998


Q ss_pred             HhhC
Q 015435          404 TRMG  407 (407)
Q Consensus       404 ~~~~  407 (407)
                      +++|
T Consensus       396 ~~~~  399 (410)
T PRK13392        396 DRLE  399 (410)
T ss_pred             HHcC
Confidence            8764

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.95  E-value=5.8e-26  Score=211.36  Aligned_cols=294  Identities=15%  Similarity=0.131  Sum_probs=206.3

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL  127 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd  127 (407)
                      ...+.++++..+.+.  .  ..  ++..-+.++++.+++++ +.     +++++++  ++||++++..++  ...+.+||
T Consensus        33 ~~~~~~~~~~~~~~~--~--~~--g~~~~~~~Le~~lA~~~-g~-----~~e~ilv--~~gg~~a~~~~~--~al~~~gd   96 (346)
T TIGR03576        33 AGGFKIDEEDLELLE--T--YV--GPAIFEEKVQELGREHL-GG-----PEEKILV--FNRTSSAILATI--LALEPPGR   96 (346)
T ss_pred             CCChhHHHHHHHHHH--H--hc--CCHHHHHHHHHHHHHHc-CC-----CcceEEE--ECCHHHHHHHHH--HHhCCCCC
Confidence            345566677666664  1  11  22344677788888877 42     3589999  999999999984  55578999


Q ss_pred             eEEec---CCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHH
Q 015435          128 TIYIP---QPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIR  204 (407)
Q Consensus       128 ~Vi~~---~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~  204 (407)
                      .|+++   .|+|..+...++..|++++.+         .++++++.    .++++++++  ++++|+|.+++.+++++|+
T Consensus        97 ~Vli~~~d~p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~----~~~~~lIii--tg~s~~G~v~~~~~L~~i~  161 (346)
T TIGR03576        97 KVVHYLPEKPAHPSIPRSCKLAGAEYFES---------DELSELKK----IDGTSLVVI--TGSTMDLKVVSEEDLKRVI  161 (346)
T ss_pred             EEEECCCCCCCchhHHHHHHHcCCEEecc---------CCHHHHhh----CcCceEEEE--ECCCCCCcccCHHHHHHHH
Confidence            99975   479999999999999876332         13444322    134566666  3469999999999999999


Q ss_pred             HHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhh
Q 015435          205 QLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL  284 (407)
Q Consensus       205 ~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~  284 (407)
                      ++|++||+++|+||+|..+..+... . .+..   ... ..+++.||||  +++|+|+||+  +++     +.+++.+..
T Consensus       162 ~la~~~~~~livDEAy~~~~~~~~~-~-~~~~---~~~-~divv~s~SK--alaG~r~G~v--~~~-----~~li~~l~~  226 (346)
T TIGR03576       162 KQAKSKEAIVLVDDASGARVRRLYG-Q-PPAL---DLG-ADLVVTSTDK--LMDGPRGGLL--AGR-----KELVDKIKS  226 (346)
T ss_pred             HHHHHcCCEEEEECCccccccccCC-C-CCHH---HcC-CcEEEeccch--hccccceEEE--EeC-----HHHHHHHHH
Confidence            9999999999999999876532111 1 1111   112 2366789999  5689999999  465     445566666


Q ss_pred             hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC---
Q 015435          285 VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN---  361 (407)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---  361 (407)
                      ..+.+.++.+++.+.++..+|+...        .+..++.++++++++.+.++.+      .+.++.++ |.|++++   
T Consensus       227 ~~~~~~~s~~~~~~~aa~~aL~~~~--------~~~~~~~l~~r~~~~~~~l~~~------~~~~~~~~-f~~~~~~~~~  291 (346)
T TIGR03576       227 VGEQFGLEAQAPLLAAVVRALEEFE--------LSRIRDAFKRKEEVYLRLFDKL------NVERTPTG-FVIKGVEEEK  291 (346)
T ss_pred             hhcCcccCccHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHHHHHHHHhC------CCCcCCCe-EEEEeCCCCC
Confidence            6555555567778888888886431        2455677888888888877643      33334455 6777653   


Q ss_pred             -HHHHHHhHhhccEEEcCC-------C--eEEecCCCCC---ChhHHHHHHHHHH
Q 015435          362 -SEQVAFMTKEYHIYMTSD-------G--RISMAGLSSK---TVPHLTDAIHAAV  403 (407)
Q Consensus       362 -~~~~~~~l~~~gi~~~~g-------g--Ris~~~~~~e---~i~~~~~~l~~~l  403 (407)
                       .+++.++|+++||.+.|+       +  ||+++. +++   +++.++++|++-+
T Consensus       292 ~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~-~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       292 LIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAA-KDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             HHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEec-ChHHhcCHHHHHHHHHhcc
Confidence             367889999999999984       2  999995 444   7999999998754

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.95  E-value=9.8e-26  Score=215.91  Aligned_cols=331  Identities=19%  Similarity=0.129  Sum_probs=215.9

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCC-------CCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPI-------VGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-------~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      +.+.|..+.    -+ +.|..++++..+.+. .......+.+.       ..++++|+.+++++ +..    ++++|++ 
T Consensus        16 ~~iyld~a~----~~-~~p~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-g~~----~~~~i~~-   83 (398)
T TIGR03392        16 GTVYLDSAA----TA-LKPQAVIDATQQFYR-LSSGTVHRSQHQQAQSLTARYELARQQVARFL-NAP----DAENIVW-   83 (398)
T ss_pred             CeEEeeCcc----cc-CCCHHHHHHHHHHHH-hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHh-CCC----CCCeEEE-
Confidence            455565554    23 556677666666553 11111112111       23567899999988 432    2478999 


Q ss_pred             ecCCcccHHHHHHHHHH--hhcCCCeEEecCCCCCC----hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCC
Q 015435          105 QCLSGTGSLRVGAEFLA--RHYHQLTIYIPQPTWGN----HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSG  178 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~--~~~~gd~Vi~~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~  178 (407)
                       |+|+|+++.+++..+.  .+.+||+|++++|.|++    +...++..|++++.++.+  .++.+|++++++.+.  +++
T Consensus        84 -t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~~~~~l~~~i~--~~t  158 (398)
T TIGR03392        84 -TRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIG--ADLLPDIRQLPELLT--PRT  158 (398)
T ss_pred             -eCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecC--CCCCcCHHHHHHHhc--cCc
Confidence             9999999999853332  14689999999999876    345567889999999983  345689999999987  567


Q ss_pred             cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc
Q 015435          179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY  258 (407)
Q Consensus       179 ~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  258 (407)
                      +++++ ++++||||.+.+   +++|+++|+++|+++++|++|...... .     .+.    ..+..+++.|++|.+|.+
T Consensus       159 ~lv~i-~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~-~-----~~~----~~~~d~~~~s~~K~~gp~  224 (398)
T TIGR03392       159 RILAL-GQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHGP-P-----DVQ----ALDIDFYAFSGHKLYGPT  224 (398)
T ss_pred             eEEEE-ECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-C-----Chh----hcCCCEEEEecccccCCC
Confidence            77766 899999999875   677888899999999999998643321 1     111    122357788889988866


Q ss_pred             CCCcceeEEeecChhhHHHHHHHHhhh-----------------hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          259 GERVGALSIVCKTEDVASRVESQLKLV-----------------IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       259 G~r~G~~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      |  +|++  +.+ ++..+.+.......                 .+....+++..++.++..+++-..     ....++.
T Consensus       225 G--~G~l--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~-----~~g~~~i  294 (398)
T TIGR03392       225 G--IGVL--YGK-TELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLT-----DIDIAAA  294 (398)
T ss_pred             c--eEEE--EEc-HHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHH-----HhCHHHH
Confidence            6  7998  455 33333221100000                 011112344445555544443211     0124466


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccccc-CCceeEEec--CCCHHHHHHhHhhccEEEcCC--------------C--eE
Q 015435          322 ADRIISMRQQLFDALSARGTPGDWSHII-KQIGMFTFT--GLNSEQVAFMTKEYHIYMTSD--------------G--RI  382 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~l~~~gi~~~~g--------------g--Ri  382 (407)
                      +++.++.++++.+.+++++.   +.... +..+++.|.  +.+.+.+...|.++||.+.+|              |  |+
T Consensus       295 ~~~~~~l~~~l~~~l~~l~g---~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRv  371 (398)
T TIGR03392       295 EAWSVSLADLAEERLAQLPG---FRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRA  371 (398)
T ss_pred             HHHHHHHHHHHHHHHhcCCC---eEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEE
Confidence            78888889999999987632   44332 334444432  455666666677799998753              2  99


Q ss_pred             EecC-CCCCChhHHHHHHHHHHHhh
Q 015435          383 SMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       383 s~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |++. .+++|++++++.|+++++.+
T Consensus       372 S~~~~~t~~ei~~l~~~l~~~~~~~  396 (398)
T TIGR03392       372 SFAPYNTQQDVDALVDAVGAALELL  396 (398)
T ss_pred             EeeccCCHHHHHHHHHHHHHHHHHh
Confidence            8865 47799999999999988764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.95  E-value=2.9e-26  Score=218.97  Aligned_cols=327  Identities=16%  Similarity=0.132  Sum_probs=211.2

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCC----cHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVG----LVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g----~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      +++++|||+.|.+   .|.+.++.+++++.+.+.........|....|    ..++++.+++++ +.       ++.++ 
T Consensus        37 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-~~-------~~~i~-  104 (385)
T PRK05958         37 DGRRMLNFASNDY---LGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWF-GA-------ERALL-  104 (385)
T ss_pred             CCceEEEeeCCCc---ccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHh-CC-------CcEEE-
Confidence            6799999999853   35334566777777777511101111222223    566777777766 31       34444 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEe
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH  184 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~  184 (407)
                       +++|++++..++  ...+.+||.|++++|+|+.+...+...|.+++.++.       .|++++++.+...+++..++++
T Consensus       105 -~~~g~~~~~~~l--~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~  174 (385)
T PRK05958        105 -FSSGYAANLAVL--TALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALIVT  174 (385)
T ss_pred             -ECcHHHHHHHHH--HHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEEE
Confidence             555666666553  344789999999999999999998899999888764       3788999988743223555565


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcce
Q 015435          185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGA  264 (407)
Q Consensus       185 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  264 (407)
                      ++++||||...   ++++|+++|++||+++|+||+|..+.++........... .....+++++.|+||.++++|   ||
T Consensus       175 ~~~~~~~G~~~---~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~-~~~~~~~i~~~s~sK~~~~~G---g~  247 (385)
T PRK05958        175 ESVFSMDGDLA---PLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAG-LAGEPDVILVGTLGKALGSSG---AA  247 (385)
T ss_pred             EecccCCCCcC---CHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhC-CCCCCceEEEEechhhcccCC---cE
Confidence            88899999854   488899999999999999999965543311111111111 123457899999999998766   88


Q ss_pred             eEEeecChhhHHHHHHHHhhhhhcc--cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015435          265 LSIVCKTEDVASRVESQLKLVIRPM--YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP  342 (407)
Q Consensus       265 ~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  342 (407)
                      +  +++ +++.+.+    ....+..  ..+++...+.++..+++...      . .+++++++.++++++.+.|++.+  
T Consensus       248 ~--~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~aa~~aal~~~~------~-~~~~~~~~~~~~~~l~~~L~~~~--  311 (385)
T PRK05958        248 V--LGS-ETLIDYL----INRARPFIFTTALPPAQAAAARAALRILR------R-EPERRERLAALIARLRAGLRALG--  311 (385)
T ss_pred             E--EcC-HHHHHHH----HHhCccceecCCCCHHHHHHHHHHHHHHh------c-CHHHHHHHHHHHHHHHHHHHHcC--
Confidence            7  454 4444333    2221111  12344444445555554221      1 14567888999999999999887  


Q ss_pred             CCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCC-------C----eEEecC-CCCCChhHHHHHHHHHH
Q 015435          343 GDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSD-------G----RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g-------g----Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                        +++..+.++++. +.+    +...+...|.++||.+.++       |    ||+++. .++++++.++++|++++
T Consensus       312 --~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        312 --FQLMDSQSAIQP-LIVGDNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL  385 (385)
T ss_pred             --CCcCCCCCCEEE-EEeCCHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence              555666666544 333    2223444445679999752       2    999873 48899999999998763

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.95  E-value=8.8e-26  Score=200.91  Aligned_cols=315  Identities=17%  Similarity=0.199  Sum_probs=207.4

Q ss_pred             cccccC-CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh--c--CC----------CeEE
Q 015435           66 SRVKEY-LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH--Y--HQ----------LTIY  130 (407)
Q Consensus        66 ~~~~~y-~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~--~--~g----------d~Vi  130 (407)
                      .+..+| +...|+++.|+..++.+ +     +++++|++    ||+.+++++..++...  .  .|          -+.+
T Consensus        59 ~D~RNY~G~l~Gipe~r~l~a~ll-g-----v~~~~viv----~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfL  128 (425)
T PF12897_consen   59 TDCRNYPGGLDGIPEARELFAELL-G-----VPPENVIV----GGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFL  128 (425)
T ss_dssp             EBTTSS-S-SS--HHHHHHHHHHH-T-----S-GGGEEE-----SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEE
T ss_pred             ccccCCCCccCChHHHHHHHHHHh-C-----CCHHHEEE----eccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEE
Confidence            355789 88999999999999999 5     34588888    6677777765544321  1  11          2479


Q ss_pred             ecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHH-HHH
Q 015435          131 IPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQL-MRS  209 (407)
Q Consensus       131 ~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~-~~~  209 (407)
                      +|.|+|..|..+.+.+|++.+.||+.   ..|+|.+.+++.+.+.+..+.+++++..+||||.++|.+..++|+++ +..
T Consensus       129 CPvPGYDRHFai~E~~Giemi~VpM~---~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA  205 (425)
T PF12897_consen  129 CPVPGYDRHFAITEHFGIEMIPVPMT---EDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAA  205 (425)
T ss_dssp             EEES--HHHHHHHHHCT-EEEEEEEE---TTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SS
T ss_pred             ecCCCchHHHHHHHhhCcEEEecCCC---CCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCC
Confidence            99999999999999999999999995   25799999999998778889999999999999999999999999988 456


Q ss_pred             cCceeeeccccccccC-CCCCchh-HHHHHHH---HcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhh
Q 015435          210 KGLLPFFDSAYQGFAS-GSLDADA-QSVRMFV---ADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL  284 (407)
Q Consensus       210 ~~~~li~D~~y~~~~~-~~~~~~~-~~~~~~~---~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~  284 (407)
                      .+..|+.|++|.-... ++.+... ..+....   ...++++.+.|.||.- .+|.+++++   +.+++..+.+.+.   
T Consensus       206 ~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~---aaS~~Nl~~~~~~---  278 (425)
T PF12897_consen  206 PDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFF---AASEANLAWIKKH---  278 (425)
T ss_dssp             TT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEE---EE-HHHHHHHHHH---
T ss_pred             cCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeee---ecCHHHHHHHHHH---
Confidence            7999999999976555 2221121 2333322   3458899999999974 599999998   5555555544443   


Q ss_pred             hhhcccCCCChhHHHHHHHHhcCh--hhHHhHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCcccccCCceeEEecCC-
Q 015435          285 VIRPMYSSPPIHGASIVATILKDS--TMYKEWTLELKAMADRIISMRQQLFDALS-ARGTPGDWSHIIKQIGMFTFTGL-  360 (407)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~-  360 (407)
                       ....+.++..+.|..-.+++.+.  .++.+++++.+-++-+...--+.|.+.|. ..+.   .++..|.||||++++. 
T Consensus       279 -~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~i---a~Wt~P~GGYFIsld~~  354 (425)
T PF12897_consen  279 -LSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGI---ASWTKPKGGYFISLDVL  354 (425)
T ss_dssp             -HHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTS---EEE---SBSS-EEEEES
T ss_pred             -hcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCe---eEecCCCCceEEEEecC
Confidence             34445689999999999999984  45566666666666666666667777776 5554   6899999999998743 


Q ss_pred             --CHHHHHHhHhhccEEEcCCC--------------eEEecCCCCCChhHHHHHHHHHHH
Q 015435          361 --NSEQVAFMTKEYHIYMTSDG--------------RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       361 --~~~~~~~~l~~~gi~~~~gg--------------Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                        .+..+.+++++.||.++|.|              ||+.+..+.||++.+++.+.-.++
T Consensus       355 ~G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~  414 (425)
T PF12897_consen  355 DGTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVK  414 (425)
T ss_dssp             TT-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence              67778899999999999954              998887677999999998876553

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.95  E-value=1.1e-25  Score=215.66  Aligned_cols=292  Identities=20%  Similarity=0.181  Sum_probs=200.4

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH--hhcCCCeEEecCCCCCC----hHHHHhhcCcee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA--RHYHQLTIYIPQPTWGN----HPKVFTLAGLSV  150 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~--~~~~gd~Vi~~~p~y~~----~~~~~~~~G~~~  150 (407)
                      ++++|+.+++++ +..    ++++|++  |+|+|+++.+++..+.  .+.+||+|+++++.|++    +....+..|+++
T Consensus        65 ~~~~r~~la~~~-g~~----~~~~i~~--~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v  137 (401)
T PRK10874         65 YEAAREQVAQLL-NAP----DAKNIVW--TRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKV  137 (401)
T ss_pred             HHHHHHHHHHHc-CCC----CCCEEEE--ECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEE
Confidence            678899999988 431    3589999  9999999999854432  24689999999999875    344557889999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++.  +.++.+|++++++.+.  ++++++++ ++|+||||.+.+   +++|+++|+++|+++|+|++|+..... .  
T Consensus       138 ~~v~~--~~~~~~d~~~l~~~i~--~~t~lv~i-~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~~-~--  206 (401)
T PRK10874        138 VKLPL--GADRLPDVDLLPELIT--PRTRILAL-GQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHFP-A--  206 (401)
T ss_pred             EEEec--CCCCcCCHHHHHHhcC--cCcEEEEE-eCCcccccCcCC---HHHHHHHHHHcCCEEEEECCccccccc-C--
Confidence            99998  3356789999999997  66777777 999999999875   678888899999999999998533221 1  


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhh-----------------hhhcccCCC
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL-----------------VIRPMYSSP  293 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~-----------------~~~~~~~~~  293 (407)
                      +   +.    ..+..+++.|++|.+|.+|  +|++  +.+ ++..+.+......                 ..+....++
T Consensus       207 ~---~~----~~~~d~~~~s~~K~~gp~G--~G~l--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~  274 (401)
T PRK10874        207 D---VQ----ALDIDFYAFSGHKLYGPTG--IGVL--YGK-SELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTP  274 (401)
T ss_pred             C---ch----hcCCCEEEEecccccCCCc--cEEE--EEc-hHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCc
Confidence            1   11    1234577899999888766  5888  444 4433332110000                 001111244


Q ss_pred             ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-CCceeEEec--CCCHHHHHHhHh
Q 015435          294 PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII-KQIGMFTFT--GLNSEQVAFMTK  370 (407)
Q Consensus       294 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~l~  370 (407)
                      +..++.++..+++-..     ....++.+++.++.++++.+.|+++..   +.... +.++++.|.  +++.+.+.+.|.
T Consensus       275 ~~~~~~al~~al~~l~-----~~g~~~~~~~~~~l~~~l~~~l~~~~g---~~~~~~~~~~i~~~~~~~~~~~~~~~~L~  346 (401)
T PRK10874        275 NVAGVIGLSAALEWLA-----DIDINQAESWSRSLATLAEDALAKLPG---FRSFRCQDSSLLAFDFAGVHHSDLVTLLA  346 (401)
T ss_pred             CHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCCCCcEEEEEECCcCHHHHHHHHH
Confidence            5555555555553211     012345678888889999999987632   44443 344443332  455666667777


Q ss_pred             hccEEEcCC--------------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          371 EYHIYMTSD--------------G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       371 ~~gi~~~~g--------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++||.+.+|              |  |||++. .+++|++++++.|+++++.+
T Consensus       347 ~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~  399 (401)
T PRK10874        347 EYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL  399 (401)
T ss_pred             HCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence            799998762              2  999875 47799999999999988754

>PLN02483 serine palmitoyltransferase

Probab=99.95  E-value=7.8e-26  Score=219.73  Aligned_cols=332  Identities=13%  Similarity=0.047  Sum_probs=209.8

Q ss_pred             CCCCeeeeeeeeeecCCCcccc-chhHHHHHHHHhccc----cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLV-LNVVRKAEQLLVNDQ----SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      ..++.+||++-.+   .|...+ +...+++.+++.+-.    .....|++..++.++++++|+++ +.      ++.+++
T Consensus        98 ~~~~~~n~~s~~Y---Lgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~-g~------~~ai~~  167 (489)
T PLN02483         98 KTRRCLNLGSYNY---LGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFV-GK------PAAIVF  167 (489)
T ss_pred             CCceEEEeecCCc---cCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHh-CC------CcEEEE
Confidence            3578899998887   454432 233344444443111    22334777788999999999999 53      255665


Q ss_pred             eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-----C--
Q 015435          104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-----P--  176 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-----~--  176 (407)
                        ++| ..++..+  +...+.+||.|++++|+|..+...++..|++++.++..       |++++++.+.+.     +  
T Consensus       168 --~~G-~~an~~~--i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t  235 (489)
T PLN02483        168 --GMG-YATNSTI--IPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRT  235 (489)
T ss_pred             --CCH-HHHHHHH--HHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhcccccc
Confidence              554 4444444  34457899999999999999999999999999999863       345555544321     2  


Q ss_pred             ---CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-HcCCcEEEEEecC
Q 015435          177 ---SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-ADGGECLVAQSYA  252 (407)
Q Consensus       177 ---~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~s  252 (407)
                         .+++++++....|++|.+.   ++++|+++|++||++||+||+|+....+ ..... ....+. ...+..|+++|||
T Consensus       236 ~~p~~k~livve~v~s~~G~~~---~l~~I~~la~~~~~~livDEa~s~g~~G-~~G~g-~~~~~~v~~~~~dI~~~SfS  310 (489)
T PLN02483        236 HRPWKKIIVIVEGIYSMEGELC---KLPEIVAVCKKYKAYVYLDEAHSIGAVG-KTGRG-VCELLGVDPADVDIMMGTFT  310 (489)
T ss_pred             ccCCceEEEEECCCCCCCCccc---CHHHHHHHHHHcCCEEEEECcCccCccC-CCCCc-hHHhcCCCcccCcEEEEecc
Confidence               2245566466678999854   6888899999999999999998743322 11111 111111 1235679999999


Q ss_pred             ccccccCCCcceeEEeecChhhHHHHHHHHhhhhhc--ccCCCChhHHHHHHHHhc---ChhhHHhHHHHHHHHHHHHHH
Q 015435          253 KNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRP--MYSSPPIHGASIVATILK---DSTMYKEWTLELKAMADRIIS  327 (407)
Q Consensus       253 K~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~  327 (407)
                      |.+|++|   ||+  +++ ++    +.+.+......  ...+.++....++...++   ..+.    .+...+.++++++
T Consensus       311 Ks~g~~G---G~i--~~~-~~----li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g----~~~~~~~~~~l~~  376 (489)
T PLN02483        311 KSFGSCG---GYI--AGS-KE----LIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDG----TNRGAQKLAQIRE  376 (489)
T ss_pred             hhcccCc---eEE--EcC-HH----HHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCcc----ccchHHHHHHHHH
Confidence            9999876   888  444 44    44444433221  111223233333333332   1100    0223455788999


Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCceeEEec--C--CCH-HHHHHhHhhccEEEcCC---------C--eEEecC-CCCC
Q 015435          328 MRQQLFDALSARGTPGDWSHIIKQIGMFTFT--G--LNS-EQVAFMTKEYHIYMTSD---------G--RISMAG-LSSK  390 (407)
Q Consensus       328 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~--~~~-~~~~~~l~~~gi~~~~g---------g--Ris~~~-~~~e  390 (407)
                      +++++.+.|++.|    +.+..+.++...++  .  ... ++...+++ +||.+.+.         +  ||+++. +++|
T Consensus       377 ~~~~l~~~L~~~G----~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~-~GI~v~~~~fp~~p~~~~~vRi~isa~~t~e  451 (489)
T PLN02483        377 NSNFFRSELQKMG----FEVLGDNDSPVMPIMLYNPAKIPAFSRECLK-QNVAVVVVGFPATPLLLARARICISASHSRE  451 (489)
T ss_pred             HHHHHHHHHHHCC----CcccCCCCCCEEEEEECCHHHHHHHHHHHHH-CCcEEeeeCCCCCCCCCceEEEEeCCCCCHH
Confidence            9999999999987    55544333333332  1  122 34555555 79988742         1  888875 5889


Q ss_pred             ChhHHHHHHHHHHHhh
Q 015435          391 TVPHLTDAIHAAVTRM  406 (407)
Q Consensus       391 ~i~~~~~~l~~~l~~~  406 (407)
                      ++++++++|+++++.+
T Consensus       452 dId~~l~~L~~~~~~~  467 (489)
T PLN02483        452 DLIKALEVISEVGDLV  467 (489)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999988765

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.95  E-value=7.4e-27  Score=195.58  Aligned_cols=277  Identities=17%  Similarity=0.166  Sum_probs=215.8

Q ss_pred             CCCCCCceEEeecCCcccHHHHHHHHHHhhcCC-CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHH
Q 015435           94 PAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ-LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDL  172 (407)
Q Consensus        94 ~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~g-d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i  172 (407)
                      -++.+++|.+  .-|+-+.+.++++.  .+.|| ++|++-.|+|..|.-.+...++.++.+|++ + .+.+|.+.+.+.+
T Consensus        82 kpLt~dnic~--GvGsDE~ID~iiR~--~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~-p-dF~lnvdai~evl  155 (375)
T KOG0633|consen   82 KPLTSDNICV--GVGSDELIDLIIRC--VCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLN-P-DFSLNVDAIAEVL  155 (375)
T ss_pred             CCCCccceEE--ecCcHHHHHHHHhh--eecCCccceeecCCcceeEEEEeecCCceEEEecCC-C-CccccHHHHHHHH
Confidence            3467899999  99999999998533  37799 789999999999988888999999999993 4 6899999999999


Q ss_pred             HcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecC
Q 015435          173 RAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA  252 (407)
Q Consensus       173 ~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  252 (407)
                      +.....+++++ ++|+||||..++.+++.+|.+.=.  +.++++||+|-+|...+.      -..+.....+.+++.++|
T Consensus       156 ~~ds~iK~~F~-tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidFsg~~S------~~~lV~kYpNLivlqTlS  226 (375)
T KOG0633|consen  156 ELDSKIKCIFL-TSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDFSGVES------RMKLVKKYPNLIVLQTLS  226 (375)
T ss_pred             hccccceEEEE-cCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEeeccccc------cchHhHhCCceeehhhhh
Confidence            86555677777 999999999999999999966554  679999999999987432      122456678999999999


Q ss_pred             ccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 015435          253 KNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQL  332 (407)
Q Consensus       253 K~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (407)
                      |.||++|+|+|+-  .++     ..+...+.....++  +.+..+..++++++++...     +.++..++.+.+.+..|
T Consensus       227 KsfGLAGiRvG~~--~~~-----~~ia~iln~~KaPY--NiS~~~s~~AL~Als~~n~-----kkme~~rdaiv~er~RL  292 (375)
T KOG0633|consen  227 KSFGLAGIRVGYG--AFP-----LSIAEILNRAKAPY--NISVAGSVAALAALSDSNG-----KKMEDVRDAIVRERERL  292 (375)
T ss_pred             hhcCcceeEeecc--ccc-----HHHHHHHHhccCCc--cccchhHHHHHHhcCcccc-----hHHHHHHHHHHHHHHHH
Confidence            9999999999998  466     55666666666544  7777778888888986542     56778888888899999


Q ss_pred             HHHHHhcCCCCCcccccCCceeEEecC-------CCHHHHHHhHhhccEEEcCC-------C--eEEecCCCCCChhHHH
Q 015435          333 FDALSARGTPGDWSHIIKQIGMFTFTG-------LNSEQVAFMTKEYHIYMTSD-------G--RISMAGLSSKTVPHLT  396 (407)
Q Consensus       333 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~g-------g--Ris~~~~~~e~i~~~~  396 (407)
                      .+.|.+++.-.  ++..+.-..|..+.       ++.....+++.++||.++--       |  ||+.+  ++|+...++
T Consensus       293 ~keLt~v~~~~--~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvG--t~EentvL~  368 (375)
T KOG0633|consen  293 FKELTEVPFLN--DYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVG--TPEENTVLM  368 (375)
T ss_pred             HHHhhcCcccc--CCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcC--CcccchHHH
Confidence            99999886411  22333333344442       24455677888899998643       2  99998  678888999


Q ss_pred             HHHHHHH
Q 015435          397 DAIHAAV  403 (407)
Q Consensus       397 ~~l~~~l  403 (407)
                      +.+++++
T Consensus       369 k~~K~~l  375 (375)
T KOG0633|consen  369 KCLKQFL  375 (375)
T ss_pred             HHHHhhC
Confidence            9988763

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.95  E-value=3.4e-26  Score=218.89  Aligned_cols=333  Identities=12%  Similarity=0.112  Sum_probs=216.8

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...+.++|||..|....+.| ..++.+.+++.+++. ............-..++.+.+++.. +       .+.+++  +
T Consensus        36 d~dG~~~iD~~~~~~~~~lG-h~~p~v~~a~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~~~~~~--~  103 (403)
T PRK05093         36 DQQGKEYIDFAGGIAVTALG-HCHPALVKALKEQGE-KLWHISNVFTNEPALRLAKKLIDAT-F-------AERVFF--A  103 (403)
T ss_pred             eCCCCEEEEcCcCHHhccCC-CCCHHHHHHHHHHHH-hcCcccCccCCHHHHHHHHHHHhhC-C-------CCEEEE--e
Confidence            34578999998885444577 567778888877775 1111111111112335555555543 2       168999  9


Q ss_pred             CCcccHHHHHHHHHHhhc------CCCeEEecCCCCCChHHHHhhc-C------------ceeeEEEeecCCCCCcChhh
Q 015435          107 LSGTGSLRVGAEFLARHY------HQLTIYIPQPTWGNHPKVFTLA-G------------LSVKTYRYYDPATRGLNFQG  167 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~------~gd~Vi~~~p~y~~~~~~~~~~-G------------~~~~~v~~~~~~~~~~d~~~  167 (407)
                      +||++|++.++++.....      ..++|+..+-+|++........ |            .+++.++.       .|++.
T Consensus       104 ~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~  176 (403)
T PRK05093        104 NSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-------NDLAA  176 (403)
T ss_pred             CchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-------CCHHH
Confidence            999999999988765542      2357888888887764422111 1            11222221       27888


Q ss_pred             HHHHHHcCCCCcEEEEecCCCCCCCCCC--CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          168 LLEDLRAAPSGAIVLLHACAHNPTGVDP--TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       168 l~~~i~~~~~~~~v~i~~~p~NPtG~~~--~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +++.+.  ++++++++ . |.||+|.++  +.+.+++|+++|++||+++|+||+|.++.+.+.   ..+...+ ..... 
T Consensus       177 l~~~l~--~~~aaiii-e-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~~-~~~pd-  247 (403)
T PRK05093        177 VKAVID--DHTCAVVV-E-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD---LFAYMHY-GVTPD-  247 (403)
T ss_pred             HHHHhc--CCeEEEEE-e-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc---chhhhhc-CCCCC-
Confidence            988886  44555555 3 788887765  899999999999999999999999998877642   2222111 11112 


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                        +.||||.++ +|+|+||+  +++     +.+.+.+.......+.+++++.|.++.+.|+...        ..+.++++
T Consensus       248 --i~s~sK~l~-~G~rig~v--v~~-----~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~--------~~~~~~~~  309 (403)
T PRK05093        248 --ILTSAKALG-GGFPIGAM--LTT-----AEIASHFKVGTHGSTYGGNPLACAVAEAVFDIIN--------TPEVLEGV  309 (403)
T ss_pred             --EEEeccccc-CCcceEEE--EEc-----HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh--------hccHHHHH
Confidence              568999999 89999999  566     4455555443333445778888888888664321        12445778


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC------H-HHHHHhHhhccEEEcCCC----eEEecC-CCCCChh
Q 015435          326 ISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN------S-EQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVP  393 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~  393 (407)
                      +++++++.+.|++++.........+..|++.|+.+.      . ++...+++ +||.+.++|    ||+++. +++++++
T Consensus       310 ~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~-~Gv~v~~~g~~~lRl~~~~~~~~~~i~  388 (403)
T PRK05093        310 KARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAE-EGVMVLVAGPDVLRFAPSLVIEEADID  388 (403)
T ss_pred             HHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHHH-CCeEEecCCCCEEEEeCCCCCCHHHHH
Confidence            889999999998764211121223345677776541      2 33445544 799999865    886554 4889999


Q ss_pred             HHHHHHHHHHHhh
Q 015435          394 HLTDAIHAAVTRM  406 (407)
Q Consensus       394 ~~~~~l~~~l~~~  406 (407)
                      +++++|+++++++
T Consensus       389 ~~~~~l~~~l~~~  401 (403)
T PRK05093        389 EGLARFEKAVAKV  401 (403)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988753

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.95  E-value=1.6e-25  Score=211.84  Aligned_cols=285  Identities=15%  Similarity=0.087  Sum_probs=192.6

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY  156 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~  156 (407)
                      +.++++.+++++ +.       +++.+  ++|+++++..++  ...+.+||.|+++.+.|.+....++..|++++.+|.+
T Consensus        53 ~~~~~e~lA~~~-g~-------~~~~i--~~g~~~a~~~~~--~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~  120 (370)
T TIGR02539        53 IHDFLEDLAEFL-GM-------DEARV--THGAREGKFAVM--HALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHT  120 (370)
T ss_pred             HHHHHHHHHHHh-CC-------CceEE--ECChHHHHHHHH--HHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecC
Confidence            567788888888 54       56788  999999999884  4446899999999888766667788999999999985


Q ss_pred             cCCCCCcChhhHHHHHHcC-----CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          157 DPATRGLNFQGLLEDLRAA-----PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       157 ~~~~~~~d~~~l~~~i~~~-----~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      .+.++.+|++++++.+.+.     ++++++++ ++|+||||...   ++++|+++|+++|+++|+|++|...... .  +
T Consensus       121 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~-~~p~~~~G~~~---~l~~i~~la~~~~~~livDea~~~g~~~-~--~  193 (370)
T TIGR02539       121 GHPEYKVDPEGYGEVIEEVEDESGKPPVLALL-THVDGEYGNLP---DAGKVAKVCREKGVPLLLNCAYTVGRMP-V--S  193 (370)
T ss_pred             CcccCCcCHHHHHHHHHHhhhccCCCcEEEEE-ECCCCCCcccc---CHHHHHHHHHHcCCeEEEECccccCCcC-C--C
Confidence            3345789999999998631     13456555 89999999955   5778888899999999999999764321 1  1


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccC--------CCChhHHHHHHH
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYS--------SPPIHGASIVAT  303 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~  303 (407)
                      .      .. .+..++++|+||.++ +|.|+||+  +++ ++    +.+.+.....++..        ......+.++..
T Consensus       194 ~------~~-~~~di~v~s~sK~~~-~~g~~G~l--~~~-~~----~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (370)
T TIGR02539       194 A------KE-IGADFIVGSGHKSMA-ASGPCGVL--GMS-EE----WEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMA  258 (370)
T ss_pred             H------HH-cCCCEEEeeCccccc-CCCCEEEE--EEC-HH----HHhhhcccccCCccceeeeecccccccHHHHHHH
Confidence            1      11 124466799999998 56789998  465 44    44444433322111        112223434443


Q ss_pred             HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--cCCceeEEecCCC------------HHHHHHhH
Q 015435          304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI--IKQIGMFTFTGLN------------SEQVAFMT  369 (407)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~------------~~~~~~~l  369 (407)
                      .+...      .+.++..++.++. ++++.+.|+++|    +...  .+..+.|+++...            ...+.+.|
T Consensus       259 al~~~------~~~l~~~~~~~~~-~~~l~~~L~~~g----~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L  327 (370)
T TIGR02539       259 SFPHV------VERVKRWDEEVKK-TRWFVAELEDIG----FIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEEL  327 (370)
T ss_pred             HHHHH------HHHHHHHHHHHHH-HHHHHHHHHhCC----cEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHH
Confidence            34321      1334444444444 458999999887    5532  2333444444321            22466667


Q ss_pred             hhccEE-EcCCC----eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          370 KEYHIY-MTSDG----RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       370 ~~~gi~-~~~gg----Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .++||. +.++.    ||++...+++++++++++|+++++++
T Consensus       328 ~e~GI~~ir~~~~~~iRis~~~~t~e~i~~l~~~L~~~~~~~  369 (370)
T TIGR02539       328 KKRGIHGIRSGQTKYFKLSVYGLTKEQVEYVVDSFEEIVEEY  369 (370)
T ss_pred             HhCCCccccCCcceEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence            778997 77753    88863358999999999999998764

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.95  E-value=1.5e-25  Score=210.20  Aligned_cols=291  Identities=18%  Similarity=0.129  Sum_probs=196.3

Q ss_pred             cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhhc
Q 015435           70 EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTLA  146 (407)
Q Consensus        70 ~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~~  146 (407)
                      .|.+.....++++.+++++ +       ++++++  ++||++++.+++  ...+.+||+|++++|+|..+..   .....
T Consensus        27 ~~~~~~~~~~l~~~~a~~~-g-------~~~~~~--~~~gt~a~~~~~--~~l~~~gd~v~~~~~~~~~~~~~~~~~~~~   94 (338)
T cd06502          27 VYGEDPTTAKLEARAAELF-G-------KEAALF--VPSGTAANQLAL--AAHTQPGGSVICHETAHIYTDEAGAPEFLS   94 (338)
T ss_pred             ccCCCHHHHHHHHHHHHHh-C-------CCeEEE--ecCchHHHHHHH--HHhcCCCCeEEEecCcceeeecCCcHHHHc
Confidence            5767778889999999988 4       267888  899999998884  3347799999999999876543   34458


Q ss_pred             CceeeEEEeecCCCCCcChhhHHHHHHcC-----CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc
Q 015435          147 GLSVKTYRYYDPATRGLNFQGLLEDLRAA-----PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ  221 (407)
Q Consensus       147 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-----~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~  221 (407)
                      |++++.++.  +. +.+|++++++++.+.     ++++++++ ++|+|| |.+++.+++++|+++|++||+++|+|++|.
T Consensus        95 g~~~~~v~~--~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l-~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~  169 (338)
T cd06502          95 GVKLLPVPG--EN-GKLTPEDLEAAIRPRDDIHFPPPSLVSL-ENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARL  169 (338)
T ss_pred             CceEEeecC--CC-CcCCHHHHHHHhhccCCCcCCcceEEEE-EeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHH
Confidence            999999987  22 579999999998742     24566665 899998 667799999999999999999999999985


Q ss_pred             cccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHH
Q 015435          222 GFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIV  301 (407)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (407)
                      .+.......   ++..... ..+ +++.|+||.++++|   |++  ++.++++.+.+.......  ....+.+.+.+.++
T Consensus       170 ~~~~~~~~~---~~~~~~~-~~d-~~~~s~sK~~~~~~---g~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~  237 (338)
T cd06502         170 ANAAAALGV---ALKTYKS-GVD-SVSFCLSKGGGAPV---GAV--VVGNRDFIARARRRRKQA--GGGMRQSGFLAAAG  237 (338)
T ss_pred             HHHHHhcCC---CHHHHHh-cCC-EEEEeccccCCCcc---ceE--EECCHHHHHHHHHHHHHh--CCChhhHHHHHHHH
Confidence            432111101   1222222 222 56789999999876   664  455666555543321111  11223455666777


Q ss_pred             HHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec-CCCHHHHHHhHh------hccE
Q 015435          302 ATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT-GLNSEQVAFMTK------EYHI  374 (407)
Q Consensus       302 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~------~~gi  374 (407)
                      ...|+...        ..+..+++.++++++.+.|++.+    +.+..+.++++.+. .-+......+++      ++|+
T Consensus       238 ~~~L~~~~--------~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi  305 (338)
T cd06502         238 LAALENDL--------WLRRLRHDHEMARRLAEALEELG----GLESEVQTNIVLLDPVEANAVFVELSKEAIERRGEGV  305 (338)
T ss_pred             HHHhcCch--------HHHHHHHHHHHHHHHHHHHHhcC----CCcccccCCeEEEecCCccHHHHHHHHHHHHhhhCCE
Confidence            77776532        22444677777889999999887    44445556654432 222222223332      4799


Q ss_pred             EEcCCC----eEEecC-CCCCChhHHHHHHHH
Q 015435          375 YMTSDG----RISMAG-LSSKTVPHLTDAIHA  401 (407)
Q Consensus       375 ~~~~gg----Ris~~~-~~~e~i~~~~~~l~~  401 (407)
                      .+.+.+    ||+... .++++++++++++++
T Consensus       306 ~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         306 LFYAWGEGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             EEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence            887653    888764 377899999998865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.95  E-value=1.7e-25  Score=213.55  Aligned_cols=331  Identities=11%  Similarity=0.094  Sum_probs=215.7

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...+++++|+..|....+.| ..++.+++++.+++. .......+.......++.++++++. +       .+.+++  +
T Consensus        36 d~~G~~~lD~~~g~~~~~lG-h~~p~v~~ai~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~~~~~~--~  103 (396)
T PRK04073         36 DPEGNRYMDMLSAYSAVNQG-HRHPKIIQALKDQAD-KVTLTSRAFHSDQLGPWYEKVAKLT-G-------KDMVLP--M  103 (396)
T ss_pred             ECCCCEEEEcCCCHHhccCC-CCCHHHHHHHHHHHh-hccccccccCCHHHHHHHHHHHhcC-C-------CCeEEE--c
Confidence            45678999999886655566 667788888888775 1111111222233445666666643 2       168999  9


Q ss_pred             CCcccHHHHHHHHHHhhc-------CC-CeEEecCCCCCChHH-HHhhcCce------------eeEEEeecCCCCCcCh
Q 015435          107 LSGTGSLRVGAEFLARHY-------HQ-LTIYIPQPTWGNHPK-VFTLAGLS------------VKTYRYYDPATRGLNF  165 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~-------~g-d~Vi~~~p~y~~~~~-~~~~~G~~------------~~~v~~~~~~~~~~d~  165 (407)
                      ++|++|++.++++.....       +| ++|+..+-+|++... .+...+..            +..++.       .|+
T Consensus       104 ~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~  176 (396)
T PRK04073        104 NTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-------GDL  176 (396)
T ss_pred             CChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-------CCH
Confidence            999999999987776541       34 678888877776543 32222211            112211       277


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHH-HHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLE-QWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~-~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      +++++.+.  ++++++++ ++++||||.+++.+ .+++|.++|++||+++|+||+|.+++..+   ..+.... .....+
T Consensus       177 ~~l~~~i~--~~~~~vii-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g---~~~~~~~-~~~~pd  249 (396)
T PRK04073        177 EALKAAIT--PNTAAFLV-EPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTG---KLFACDW-DNVTPD  249 (396)
T ss_pred             HHHHHhcc--cCeEEEEE-cCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCc---HHHHhhh-cCCCCC
Confidence            88888886  45666555 88899999998754 69999999999999999999999887653   2222111 111122


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                         +.++||.+|.+|+|+||+  +++ +    ++.+.+.......+++.+++++.++.+.|+...      +  +...++
T Consensus       250 ---i~~~sK~lg~gg~~ig~~--~~~-~----~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~------~--~~l~~~  311 (396)
T PRK04073        250 ---MYILGKALGGGVFPISCV--AAN-R----DILGVFTPGSHGSTFGGNPLACAVSIAALEVLE------E--EKLPER  311 (396)
T ss_pred             ---EEEecccccCCCCcceEE--EEc-H----HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH------h--cCHHHH
Confidence               335799999888999999  465 3    444444433333455778888888888876321      1  234466


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC--CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHH
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTD  397 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~  397 (407)
                      .+++++++.+.|++++.+ .+....+.| .|.++.+  +.+.+.+.|.++||.+.+.+    ||++.. .++++++++++
T Consensus       312 ~~~~~~~l~~~L~~l~~~-~i~~~~~~g-~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iRi~p~l~~t~e~i~~~~~  389 (396)
T PRK04073        312 SLELGEYFKEQLKEIDNP-MIKEVRGRG-LFIGVELNEPARPYCEALKEEGLLCKETHETVIRFAPPLVITKEELDWAFE  389 (396)
T ss_pred             HHHHHHHHHHHHHhhcCC-cccceecce-EEEEEEecchHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHH
Confidence            677788899988876521 133334444 4455544  33344444556899998754    887432 48899999999


Q ss_pred             HHHHHH
Q 015435          398 AIHAAV  403 (407)
Q Consensus       398 ~l~~~l  403 (407)
                      +|++++
T Consensus       390 ~l~~~l  395 (396)
T PRK04073        390 KIKAVL  395 (396)
T ss_pred             HHHHHh
Confidence            999875

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.95  E-value=1.6e-25  Score=210.92  Aligned_cols=323  Identities=15%  Similarity=0.096  Sum_probs=208.4

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccc-cccC----CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR-VKEY----LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y----~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      .+++|+...+   .|-+.++++++++.+.+. +... ...|    .......++++.+++++ +.       ++.++  +
T Consensus         2 ~~~~~~~~~~---~~~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~-------~~~iv--~   67 (349)
T cd06454           2 KVLNFCSNDY---LGLANHPEVIEAAKEALD-KYGVGAGGSRLISGTSDLHEELEEELAEFH-GK-------EAALV--F   67 (349)
T ss_pred             CceecccCCc---cccCCCHHHHHHHHHHHH-HhCCCCCCcCeecCCchHHHHHHHHHHHHh-CC-------CCEEE--e
Confidence            5677887765   675657777777777765 2111 1122    22334577888888877 43       34556  6


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC--CCCcEEEEe
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--PSGAIVLLH  184 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--~~~~~v~i~  184 (407)
                      ++|++++.+++  ...+.+||.|++++|.|+.+...++..|.+++.++.       .|++++++.+.+.  +.+..++++
T Consensus        68 ~sg~~a~~~~~--~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~~  138 (349)
T cd06454          68 SSGYAANDGVL--STLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-------NDMEDLEKLLREARRPYGKKLIVT  138 (349)
T ss_pred             ccHHHHHHHHH--HHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHHhhccCCCeEEEE
Confidence            67778887763  444679999999999999988888899999887753       4778888888742  134455555


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-HcCCcEEEEEecCccccccCCCcc
Q 015435          185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-ADGGECLVAQSYAKNMGLYGERVG  263 (407)
Q Consensus       185 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G  263 (407)
                      ++++||||+..   ++++|+++|+++|+++|+|++|........ ....  ..+. ...+..++++|+||.++.+|   |
T Consensus       139 ~~~~~~tG~~~---~~~~i~~~~~~~~~~livD~a~~~g~~~~~-~~~~--~~~~~~~~~~~i~~~s~sK~~~~~g---G  209 (349)
T cd06454         139 EGVYSMDGDIA---PLPELVDLAKKYGAILFVDEAHSVGVYGPH-GRGV--EEFGGLTDDVDIIMGTLGKAFGAVG---G  209 (349)
T ss_pred             eccccCCCCcc---CHHHHHHHHHHcCCEEEEEccccccccCCC-CCCh--hhhccccccCcEEEeechhhhcccC---C
Confidence            89999999965   478888999999999999999864332211 1111  1111 22356799999999998655   8


Q ss_pred             eeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015435          264 ALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG  343 (407)
Q Consensus       264 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  343 (407)
                      |+  +. ++++.+.+........  .....+...+.++...++...      + .+..++++.++++++.+.|++.+   
T Consensus       210 ~i--~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~------~-~~~~~~~~~~~~~~l~~~l~~~g---  274 (349)
T cd06454         210 YI--AG-SKELIDYLRSYARGFI--FSTSLPPAVAAAALAALEVLQ------G-GPERRERLQENVRYLRRGLKELG---  274 (349)
T ss_pred             EE--EC-CHHHHHHHHHhchhhh--ccCCCCHHHHHHHHHHHHHHh------c-CHHHHHHHHHHHHHHHHHHHhcC---
Confidence            87  44 4554444333221111  112344455555555554221      1 35567888899999999998876   


Q ss_pred             CcccccCCceeEEecC----CCHHHHHHhHhhccEEEcCC---------C--eEEecC-CCCCChhHHHHHHHHH
Q 015435          344 DWSHIIKQIGMFTFTG----LNSEQVAFMTKEYHIYMTSD---------G--RISMAG-LSSKTVPHLTDAIHAA  402 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~g---------g--Ris~~~-~~~e~i~~~~~~l~~~  402 (407)
                       +....+.++++.+..    .+.+.+.+.|.++||.+.++         +  ||+++. .+++++++++++|+++
T Consensus       275 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         275 -FPVGGSPSHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             -CcccCCCCCcEEEEeCCChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence             444444344433321    23344555555569998652         2  888864 5789999999999764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.95  E-value=1.1e-25  Score=216.86  Aligned_cols=341  Identities=16%  Similarity=0.116  Sum_probs=225.9

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++.++|+..|.+..+.| ..++.+++++.+++.  .. .+.+.+..+..++++++++++..       .+++++  +
T Consensus        44 d~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~--~~-~~~~~~~~~~~~lae~l~~~~~~-------~~~v~~--~  110 (423)
T TIGR00713        44 DVDGNEYIDYVLSWGPLILG-HAHPRVVEAVKEALE--RG-TSYGAPTEAEILLAKEIISRVPS-------VEMVRF--V  110 (423)
T ss_pred             eCCCCEEEEccccccccccC-CCCHHHHHHHHHHHH--hC-CcCCCCCHHHHHHHHHHHHhCCc-------ccEEEE--e
Confidence            45678999999998755567 678888888888886  22 22223566789999999998732       168999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhh---cCceeeEEEeec-------CCCC---CcChhhHHHHHH
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTL---AGLSVKTYRYYD-------PATR---GLNFQGLLEDLR  173 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~---~G~~~~~v~~~~-------~~~~---~~d~~~l~~~i~  173 (407)
                      +||++|++.++++.+.....++|+...++|+++...+..   .|......+...       +...   ..|++++++.+.
T Consensus       111 ~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~  190 (423)
T TIGR00713       111 NSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFE  190 (423)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHH
Confidence            999999999988877666678999999999998654332   111111111100       0000   027889998886


Q ss_pred             cC-CCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          174 AA-PSGAIVLLHACAHNPTGVDPT-LEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       174 ~~-~~~~~v~i~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                      +. ++.+++++.+.++| +|.+.+ ++.+++|.++|++||+++|+||+|.++..+.    ......+ ....+   +.+|
T Consensus       191 ~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~----~~~~~~~-~~~pD---i~t~  261 (423)
T TIGR00713       191 EYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVAL----GGAQEYF-GVEPD---LTTL  261 (423)
T ss_pred             HcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCc----chhHHHh-CCCcc---hhhh
Confidence            43 34567777678899 788877 6899999999999999999999999885431    1111112 11122   2369


Q ss_pred             CccccccCCCcceeEEeecChhhHHHHHHHHhh---hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435          252 AKNMGLYGERVGALSIVCKTEDVASRVESQLKL---VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       252 sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  328 (407)
                      ||.++ +|+|+||+  +++     +.+.+.+..   .....+++.+++++.++.+.++...  +.  +..+..++...+.
T Consensus       262 sK~l~-~G~pig~v--~~~-----~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~--~~--~~~~~~~~~~~~~  329 (423)
T TIGR00713       262 GKIIG-GGLPVGAF--GGR-----REIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLD--EE--GVYTELDELAKRL  329 (423)
T ss_pred             hhhhc-CCCceeee--eEH-----HHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHh--cc--cHHHHHHHHHHHH
Confidence            99999 89999999  565     444444432   1222345778888888887776321  00  1344555556666


Q ss_pred             HHHHHHHHHhcCCCCCccc-ccCCceeEEe-cCC------------CHH---HHHHhHhhccEEEcCCC----eEEecCC
Q 015435          329 RQQLFDALSARGTPGDWSH-IIKQIGMFTF-TGL------------NSE---QVAFMTKEYHIYMTSDG----RISMAGL  387 (407)
Q Consensus       329 ~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~------------~~~---~~~~~l~~~gi~~~~gg----Ris~~~~  387 (407)
                      ++.+.+.+++.+    +.. ....|+++.+ +..            +.+   .+...+.++||.+.+++    |+++. .
T Consensus       330 ~~~l~~~~~~~~----~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~l~~~-~  404 (423)
T TIGR00713       330 AEGLSEVLEDTG----IPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSAA-H  404 (423)
T ss_pred             HHHHHHHHHhcC----CCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCccceeeECC-C
Confidence            666766666665    332 2234555443 321            111   23333445899987754    88877 4


Q ss_pred             CCCChhHHHHHHHHHHHhh
Q 015435          388 SSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       388 ~~e~i~~~~~~l~~~l~~~  406 (407)
                      +++++++++++|.++++++
T Consensus       405 t~~~i~~~~~~l~~~l~~~  423 (423)
T TIGR00713       405 TEEDIENTIEAAEEVFAEL  423 (423)
T ss_pred             CHHHHHHHHHHHHHHHhhC
Confidence            8999999999999998764

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.95  E-value=3.5e-25  Score=210.56  Aligned_cols=337  Identities=13%  Similarity=0.113  Sum_probs=219.9

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...+++++||..|....+.| ..++++++++.+++.  .. .+ . ......++++++++.+....+    .+.+++  +
T Consensus        25 d~~G~~~lD~~s~~~~~~lG-~~~p~v~~a~~~~~~--~~-~~-~-~~~~~~~~~~~la~~l~~~~~----~~~~~~--~   92 (377)
T PRK02936         25 DNNGKTYLDFTSGIAVCNLG-HCHPTVTKAVQEQLD--DI-WH-V-SNLFTNSLQEEVASLLAENSA----GDLVFF--C   92 (377)
T ss_pred             eCCCCEEEECCcchhhccCC-CCCHHHHHHHHHHHH--hc-cc-c-ccccCCHHHHHHHHHHHhcCC----CCEEEE--e
Confidence            34678999999997544467 567788888888876  21 11 1 123446788889998844322    157888  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH-HhhcCceee---EEEeecCCCC--CcChhhHHHHHHcCCCCcE
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV-FTLAGLSVK---TYRYYDPATR--GLNFQGLLEDLRAAPSGAI  180 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~-~~~~G~~~~---~v~~~~~~~~--~~d~~~l~~~i~~~~~~~~  180 (407)
                      +||++|++.+.++.......++|+..+++|++.... ....|....   ..|.......  -.|++.+++.+.  +++++
T Consensus        93 ~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~  170 (377)
T PRK02936         93 NSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMN--EEVAA  170 (377)
T ss_pred             CCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhcc--CCeEE
Confidence            999999999976554443446799999988755432 222221110   0111000000  126888998886  45666


Q ss_pred             EEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC
Q 015435          181 VLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG  259 (407)
Q Consensus       181 v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  259 (407)
                      +++ ..+++++|.. .+++++++|.++|++||+++|+||+|.++.+.+   ...+...+ ....+   +.++||.++ +|
T Consensus       171 ii~-e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g---~~~~~~~~-~~~~d---i~t~sK~l~-~G  241 (377)
T PRK02936        171 VML-EVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTG---TLFAYEQF-GLDPD---IVTVAKGLG-NG  241 (377)
T ss_pred             EEE-ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---hhhHHHhh-CCCCc---EEEEccccc-CC
Confidence            666 7778898887 688999999999999999999999999887654   22222222 11222   236999999 89


Q ss_pred             CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435          260 ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR  339 (407)
Q Consensus       260 ~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  339 (407)
                      +|+||+  +++ ++    +.+.+.......+.++++++|.++.++++...        .+...++++++.+++.+.|++.
T Consensus       242 ~~ig~v--~~~-~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--------~~~~~~~~~~~~~~l~~~L~~~  306 (377)
T PRK02936        242 IPVGAM--IGK-KE----LGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIK--------QPSFLEEVQEKGEYFLQKLQEE  306 (377)
T ss_pred             CccEEE--EEc-HH----HHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHHHH
Confidence            999999  565 44    44444433333445778889999988886431        1233455666777777776653


Q ss_pred             --CCCCCcccccCCceeEEecCCC--HHHHHHhHhhccEEEcCCC----eEEec-CCCCCChhHHHHHHHHHH
Q 015435          340 --GTPGDWSHIIKQIGMFTFTGLN--SEQVAFMTKEYHIYMTSDG----RISMA-GLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       340 --~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~~~~~~l~~~l  403 (407)
                        +.+. .....+ .|++.|+.+.  .+.+...|.++||.+.|+|    ||++. ..+++++++++++|++++
T Consensus       307 ~~~~~~-~~~v~~-~g~~~~i~~~~~~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        307 LEHLEC-VKNIRG-KGLMIGIECTEEVAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             HhhCCc-EEeEee-cceEEEEEecchHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence              2110 222223 4577777663  4455566777999999876    88852 358899999999998763

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.94  E-value=2.3e-25  Score=213.07  Aligned_cols=341  Identities=13%  Similarity=0.093  Sum_probs=222.1

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ..+++++||+..|....+.| ..++++++++.+++.+-......| ......++.+++++.. +       .+.+++  +
T Consensus        35 d~dG~~~lD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~-~-------~~~v~~--~  102 (406)
T PRK12381         35 DQQGKEYIDFAGGIAVNALG-HAHPALREALNEQASKFWHTGNGY-TNEPVLRLAKKLIDAT-F-------ADRVFF--C  102 (406)
T ss_pred             eCCCCEEEEcCcCHhhccCC-CCCHHHHHHHHHHHhhcccccCcc-CCHHHHHHHHHHHhhC-C-------CCeEEE--c
Confidence            35678999999986655677 557788888888875111111112 1222445666666654 2       268999  9


Q ss_pred             CCcccHHHHHHHHHHhhc------CCCeEEecCCCCCChHHHHhhcCceeeEE----Eeec--CCCCCcChhhHHHHHHc
Q 015435          107 LSGTGSLRVGAEFLARHY------HQLTIYIPQPTWGNHPKVFTLAGLSVKTY----RYYD--PATRGLNFQGLLEDLRA  174 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~------~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v----~~~~--~~~~~~d~~~l~~~i~~  174 (407)
                      +||++|++.++++.+...      ...+|+..+.+|++........+......    ++..  ....-.|++.+++.+. 
T Consensus       103 ~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-  181 (406)
T PRK12381        103 NSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALID-  181 (406)
T ss_pred             CCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhcc-
Confidence            999999999988876552      34679999999988865443332211100    0000  0001137888888886 


Q ss_pred             CCCCcEEEEecCCCCCCCCCC--CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecC
Q 015435          175 APSGAIVLLHACAHNPTGVDP--TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA  252 (407)
Q Consensus       175 ~~~~~~v~i~~~p~NPtG~~~--~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  252 (407)
                       ++..++++  .|.||+|-++  +.+.+++|+++|++||+++|+||+|.++++.+   ..+....+.. ..+   +.++|
T Consensus       182 -~~~aavii--EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G---~~~~~~~~~v-~pD---i~t~s  251 (406)
T PRK12381        182 -DQTCAVIV--EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG---ELYAYMHYGV-TPD---VLTTA  251 (406)
T ss_pred             -CCeeEEEE--eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCc---chhhhHhhCC-CCC---EEEeh
Confidence             44455554  5899998764  79999999999999999999999998887754   2222222211 112   35899


Q ss_pred             ccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 015435          253 KNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQL  332 (407)
Q Consensus       253 K~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (407)
                      |.++ +|+|+||+  +++     +++.+.+.......+++.+++.+.++.+.++...        -.+++++++++.+++
T Consensus       252 K~l~-gG~~ig~~--~~~-----~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~--------~~~~~~~~~~~~~~l  315 (406)
T PRK12381        252 KALG-GGFPIGAM--LTT-----EKCASVMTVGTHGTTYGGNPLASAVAGKVLELIN--------TPEMLNGVKQRHDWF  315 (406)
T ss_pred             hhhh-CCCceEEE--EEc-----HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHH
Confidence            9998 89999999  566     4455555544334455778888888887764221        224668888888999


Q ss_pred             HHHHHhcCCCCCcccccCCceeEEecCCC------HHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHHH
Q 015435          333 FDALSARGTPGDWSHIIKQIGMFTFTGLN------SEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIHA  401 (407)
Q Consensus       333 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~  401 (407)
                      .+.|++++....+.......|++.++.+.      ...+...+.++||.+.+.|    ||+++. ++++++++++++|++
T Consensus       316 ~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~  395 (406)
T PRK12381        316 VERLNTINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFAR  395 (406)
T ss_pred             HHHHHHHHhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHH
Confidence            98888764211111112233555555432      2345566677899998754    777654 588999999999999


Q ss_pred             HHHhh
Q 015435          402 AVTRM  406 (407)
Q Consensus       402 ~l~~~  406 (407)
                      +++++
T Consensus       396 ~l~~~  400 (406)
T PRK12381        396 ACERF  400 (406)
T ss_pred             HHHHH
Confidence            98754

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.94  E-value=1.5e-24  Score=208.17  Aligned_cols=330  Identities=17%  Similarity=0.122  Sum_probs=220.3

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc--cCCC----CCCcHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK--EYLP----IVGLVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~----~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      +..++-|..|..    | +.|..++++..+.+.......+  .+..    ...++++|+.+++++ +..    ++++|++
T Consensus        16 ~~~~~yld~~~~----~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~-~~~----~~~~v~~   85 (403)
T TIGR01979        16 GKPLVYLDSAAT----S-QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFI-NAA----SDEEIVF   85 (403)
T ss_pred             CCceEEEeCccc----c-CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHh-CcC----CCCeEEE
Confidence            456777776653    4 5566676666555431111111  1100    124678999999988 532    1368999


Q ss_pred             eecCCcccHHHHHHHHHH--hhcCCCeEEecCCCCCChH----HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC
Q 015435          104 VQCLSGTGSLRVGAEFLA--RHYHQLTIYIPQPTWGNHP----KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS  177 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~--~~~~gd~Vi~~~p~y~~~~----~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~  177 (407)
                        |+|+|+++.+++..+.  .+.+||+|+++++.|++..    ...+..|.+++.++.+  .++.+|++++++.+.  ++
T Consensus        86 --~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~i~--~~  159 (403)
T TIGR01979        86 --TRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD--DDGTLDLDDLEKLLT--EK  159 (403)
T ss_pred             --eCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC--CCCCCCHHHHHHHhc--cC
Confidence              9999999998853332  2468999999999887643    4455789999999983  456789999999987  56


Q ss_pred             CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc
Q 015435          178 GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL  257 (407)
Q Consensus       178 ~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~  257 (407)
                      ++++++ ++++||||++++   +++|+++|+++|+++|+|++|+..... .     .+    ......+++.|++|.+|.
T Consensus       160 ~~lv~~-~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~~-~-----~~----~~~~~d~~~~s~~K~~gp  225 (403)
T TIGR01979       160 TKLVAI-THVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPHMP-V-----DV----QALDCDFYVFSGHKMYGP  225 (403)
T ss_pred             CeEEEE-EcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcCccc-c-----Cc----cccCCCEEEEecccccCC
Confidence            677666 899999999887   678888899999999999998643221 1     11    112356888999998886


Q ss_pred             cCCCcceeEEeecChhhHHHHHHHHhhhh---------------------hcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435          258 YGERVGALSIVCKTEDVASRVESQLKLVI---------------------RPMYSSPPIHGASIVATILKDSTMYKEWTL  316 (407)
Q Consensus       258 ~G~r~G~~~~v~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  316 (407)
                      +|  +|++  +++ ++    +.+.+....                     +....+++...+.++..+++..      .+
T Consensus       226 ~G--~g~l--~~~-~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~------~~  290 (403)
T TIGR01979       226 TG--IGVL--YGK-EE----LLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYL------EA  290 (403)
T ss_pred             CC--ceEE--EEc-hH----HHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHH------HH
Confidence            66  7888  455 33    333222110                     0011234444444544444321      12


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC-----ceeEEec--CCCHHHHHHhHhhccEEEcCC---------
Q 015435          317 -ELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ-----IGMFTFT--GLNSEQVAFMTKEYHIYMTSD---------  379 (407)
Q Consensus       317 -~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~l~~~gi~~~~g---------  379 (407)
                       ..++.+++..+.++++.+.|++++.   +++..+.     ++++.+.  +.+.+.+...|+++||.+.+|         
T Consensus       291 ~g~~~~~~~~~~l~~~l~~~l~~~~g---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~  367 (403)
T TIGR01979       291 IGLENIEAHEHELTAYALERLGEIPG---LRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCAQPLMR  367 (403)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhhHHHHH
Confidence             2456778888999999999987742   5554432     5555443  455666667778899998753         


Q ss_pred             -----C--eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          380 -----G--RISMAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       380 -----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                           +  |||++. .+++|+++++++|+++++.+|
T Consensus       368 ~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~~  403 (403)
T TIGR01979       368 RFGVPATCRASFYIYNTEEDIDALVEALKKVRKFFG  403 (403)
T ss_pred             HhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHhC
Confidence                 2  999874 377999999999999998876

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.94  E-value=1.1e-24  Score=209.07  Aligned_cols=333  Identities=15%  Similarity=0.118  Sum_probs=218.4

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc--ccCC--C--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV--KEYL--P--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~y~--~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      +++-|..+.    -+ |.|..++++..+.+.......  ..+.  +  ..-++++|+.+++++ +..    ++++|++  
T Consensus        23 ~~iYld~a~----~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~~----~~~~v~~--   90 (406)
T PRK09295         23 PLAYLDSAA----SA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFI-NAR----SAEELVF--   90 (406)
T ss_pred             ceEEEeCcc----cc-cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHc-CcC----CCCeEEE--
Confidence            456666553    13 556677666655553111011  1110  0  122668899999988 431    2478999  


Q ss_pred             cCCcccHHHHHHHHHH--hhcCCCeEEecCCCCCCh----HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCc
Q 015435          106 CLSGTGSLRVGAEFLA--RHYHQLTIYIPQPTWGNH----PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGA  179 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~--~~~~gd~Vi~~~p~y~~~----~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~  179 (407)
                      |+|+|+++.+++..+.  .+.+||+|+++++.|++.    ....+..|++++.++.+  .++.+|++++++.+.  ++++
T Consensus        91 t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~--~~t~  166 (406)
T PRK09295         91 VRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPALFD--ERTR  166 (406)
T ss_pred             eCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecC--CCCCCCHHHHHHhcC--CCcE
Confidence            9999999998854321  357899999999887643    44556789999999983  346689999999987  5677


Q ss_pred             EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC
Q 015435          180 IVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG  259 (407)
Q Consensus       180 ~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  259 (407)
                      ++++ ++|+||||++.+   +++|+++|+++|+++++|++|+..... .     .+    ...+..+++.|++|.+|.+|
T Consensus       167 lv~l-~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~~-~-----~~----~~~~~D~~~~s~~K~~gp~G  232 (406)
T PRK09295        167 LLAI-THVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMHHP-V-----DV----QALDCDFYVFSGHKLYGPTG  232 (406)
T ss_pred             EEEE-ecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccCccc-c-----Cc----hhcCCCEEEeehhhccCCCC
Confidence            7777 899999999876   677888899999999999998643321 1     11    11234588899999888666


Q ss_pred             CCcceeEEeecChhhHHHHHHHHhhh------------------hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          260 ERVGALSIVCKTEDVASRVESQLKLV------------------IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       260 ~r~G~~~~v~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                        +|++  +++ +++.+.+.......                  .+....+++..++.++..+++-..     ....++.
T Consensus       233 --~G~l--~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~-----~~g~~~i  302 (406)
T PRK09295        233 --IGIL--YVK-EALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVS-----ALGLNNI  302 (406)
T ss_pred             --cEEE--EEc-hHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHH-----HhCHHHH
Confidence              7888  455 33322221000000                  011222556656666665554221     1135667


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccC--CceeEEec--CCCHHHHHHhHhhccEEEcCC--------------C--e
Q 015435          322 ADRIISMRQQLFDALSARGTPGDWSHIIK--QIGMFTFT--GLNSEQVAFMTKEYHIYMTSD--------------G--R  381 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~l~~~gi~~~~g--------------g--R  381 (407)
                      +++.++.++++.+.|++++.   +.+..+  ..+++.|.  +.+.+.+...|+++||.+..|              +  |
T Consensus       303 ~~~~~~l~~~l~~~l~~~~~---~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iR  379 (406)
T PRK09295        303 AEYEQNLMHYALSQLESVPD---LTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCR  379 (406)
T ss_pred             HHHHHHHHHHHHHHHhcCCC---EEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEE
Confidence            78888899999999987742   444433  24555543  456666777788899999654              2  9


Q ss_pred             EEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          382 ISMAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       382 is~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      +|++. .+++|+++++++|+++.+-+|
T Consensus       380 iS~~~ynt~~did~l~~~l~~i~~~~~  406 (406)
T PRK09295        380 ASLAMYNTHEEVDRLVAGLQRIHRLLG  406 (406)
T ss_pred             EEccCCCCHHHHHHHHHHHHHHHHHhC
Confidence            98875 367999999999999866543

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.94  E-value=3.9e-25  Score=213.11  Aligned_cols=341  Identities=14%  Similarity=0.104  Sum_probs=215.0

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCC----CCcHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPI----VGLVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~----~g~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      ..+.++|||..|....+.| ..++.+++++.+++.  .  ...|...    ....++++.+++++ +.     ..+++++
T Consensus        33 ~dG~~~id~~~~~~~~~lG-~~~p~v~~a~~~~~~--~--~~~~~~~~~~~~~~~~l~~~l~~~~-~~-----~~~~v~~  101 (413)
T cd00610          33 VDGNRYLDFLSGIGVLNLG-HNHPEVVEALKEQLA--K--LTHFSLGFFYNEPAVELAELLLALT-PE-----GLDKVFF  101 (413)
T ss_pred             CCCCEEEEcCccHHhhccC-CCCHHHHHHHHHHHH--h--CcCccCcccCCHHHHHHHHHHHHhC-CC-----CCCEEEE
Confidence            3578999999875433455 456677887777775  2  1223222    23445556666655 21     2489999


Q ss_pred             eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcC-------------ceeeEEEeecC----CCCCcChh
Q 015435          104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAG-------------LSVKTYRYYDP----ATRGLNFQ  166 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G-------------~~~~~v~~~~~----~~~~~d~~  166 (407)
                        ++||++|+..+++++..+.++++|++.+++|+++.......+             .+++.+|.+.+    ..+..|++
T Consensus       102 --~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  179 (413)
T cd00610         102 --VNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLE  179 (413)
T ss_pred             --cCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHH
Confidence              999999999997766556789999999999998765444321             23455555211    11344889


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      .+++.+.+.+....++++...+|++|.++ +.+.+++|.++|++||+++|+||+|.+++..+   .......+ ....+ 
T Consensus       180 ~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g---~~~~~~~~-~~~~d-  254 (413)
T cd00610         180 ALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTG---KMFAFEHF-GVEPD-  254 (413)
T ss_pred             HHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---chhhHhhc-CCCCC-
Confidence            99998874333444455355667779875 77789999999999999999999999875543   11122111 11112 


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                        +.|+||.++. |+|+||+  +++ +++.+.+  .........+.+.+.+.+.++.+.++...      +  +...+++
T Consensus       255 --~~t~sK~l~~-g~~~g~~--~~~-~~~~~~~--~~~~~~~~~t~~~~~~~~~a~~a~l~~l~------~--~~~~~~~  318 (413)
T cd00610         255 --IVTLGKGLGG-GLPLGAV--LGR-EEIMDAF--PAGPGLHGGTFGGNPLACAAALAVLEVLE------E--EGLLENA  318 (413)
T ss_pred             --eEEEcccccC-ccccEEE--EEc-HHHHHhh--ccCCCCCCCCCCcCHHHHHHHHHHHHHHH------h--ccHHHHH
Confidence              4588999995 8999999  454 4433332  01222223344667777777776664321      1  2455677


Q ss_pred             HHHHHHHHHHHHhcCCC-CCcccccCCceeEEecCC------------CHHHHHHhHhhccEEEcCCC----eEEecC-C
Q 015435          326 ISMRQQLFDALSARGTP-GDWSHIIKQIGMFTFTGL------------NSEQVAFMTKEYHIYMTSDG----RISMAG-L  387 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~~~~gg----Ris~~~-~  387 (407)
                      +++.+++.+.++.+... .......+.+ .+.++.+            ....+.+.|.++||.+.|++    |++++. .
T Consensus       319 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~lR~~~~~~~  397 (413)
T cd00610         319 AELGEYLRERLRELAEKHPLVGDVRGRG-LMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLII  397 (413)
T ss_pred             HHHHHHHHHHHHHHHhhCCcEEEeecCc-eEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecCCCEEEEECCCcC
Confidence            77777777777765310 0011123344 4444422            12334455566899999973    887654 4


Q ss_pred             CCCChhHHHHHHHHHH
Q 015435          388 SSKTVPHLTDAIHAAV  403 (407)
Q Consensus       388 ~~e~i~~~~~~l~~~l  403 (407)
                      +++++++++++|++++
T Consensus       398 t~~~i~~~~~~l~~~l  413 (413)
T cd00610         398 TEEEIDEGLDALDEAL  413 (413)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            7899999999998763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.94  E-value=2.6e-24  Score=206.14  Aligned_cols=329  Identities=16%  Similarity=0.115  Sum_probs=213.3

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-----ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-----KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ++++++|+...+   .|...++.+++++.+++. .....     .-|.......++++++++++ +.       +..++ 
T Consensus        44 ~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~g~~~~~~~Le~~la~~~-g~-------~~~l~-  110 (402)
T TIGR01821        44 AKDVTVWCSNDY---LGMGQHPEVLQAMHETLD-KYGAGAGGTRNISGTNIPHVELEAELADLH-GK-------ESALV-  110 (402)
T ss_pred             CeeEEEeEccCc---CCCCCCHHHHHHHHHHHH-HcCCCCcchhhhhCCcHHHHHHHHHHHHHh-CC-------CeEEE-
Confidence            367899999988   675667778888888775 21111     01222334678899999888 43       45666 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-C-CCcEEE
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-P-SGAIVL  182 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-~-~~~~v~  182 (407)
                       +++|++++..++.++....+++.|+.....|......+...|.++..++.       .|++++++.+... + .+++++
T Consensus       111 -~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~  182 (402)
T TIGR01821       111 -FTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKIIA  182 (402)
T ss_pred             -ECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEEE
Confidence             77779998888544432336666666656666666677777877765543       2667777777532 2 345555


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH-cCCcEEEEEecCccccccCCC
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA-DGGECLVAQSYAKNMGLYGER  261 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~r  261 (407)
                      + ++|+||||.+.+   +++|+++|++||+++|+||+|....++.. ..  ....... ..+..++++||||.+|++|  
T Consensus       183 ~-e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~-g~--g~~~~~~~~~~~div~~t~sKa~g~~G--  253 (402)
T TIGR01821       183 F-ESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPR-GG--GIAERDGLMHRIDIIEGTLAKAFGVVG--  253 (402)
T ss_pred             E-cCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCC-CC--ccchhccCCCCCeEEEEechhhhccCC--
Confidence            5 999999999876   78888889999999999999973333211 01  1111111 1234688899999999877  


Q ss_pred             cceeEEeecChhhHHHHHHHHhhhhhc--ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435          262 VGALSIVCKTEDVASRVESQLKLVIRP--MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR  339 (407)
Q Consensus       262 ~G~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  339 (407)
                       ||+  +++ +++    .+.+......  .+.+.++..+.++.+.++...      + .+..+++++++++++.+.|++.
T Consensus       254 -G~i--~~~-~~~----~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~------~-~~~~~~~~~~~~~~l~~~L~~~  318 (402)
T TIGR01821       254 -GYI--AAS-RKL----IDAIRSYAPGFIFTTSLPPAIAAGATASIRHLK------E-SQDLRRAHQENVKRLKNLLEAL  318 (402)
T ss_pred             -cee--ecC-HHH----HHHHHHhCcCceecCcCCHHHHHHHHHHHHHhh------c-CHHHHHHHHHHHHHHHHHHHHc
Confidence             887  344 444    4434332222  223456666777776665331      1 1345566778899999999888


Q ss_pred             CCCCCcccccCCceeEEec-CC--CH-HHHHHhHhhccEEEcCC-------C----eEEecC-CCCCChhHHHHHHHHHH
Q 015435          340 GTPGDWSHIIKQIGMFTFT-GL--NS-EQVAFMTKEYHIYMTSD-------G----RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~-~~--~~-~~~~~~l~~~gi~~~~g-------g----Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      |    +++..+.++++.+. +.  .. +....+++++||.+.+.       |    ||++.. .+++|++++++.|++++
T Consensus       319 g----~~~~~~~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~  394 (402)
T TIGR01821       319 G----IPVIPNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVW  394 (402)
T ss_pred             C----CCcCCCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            7    56555666654332 22  12 23445566679998652       2    887753 58899999999999999


Q ss_pred             HhhC
Q 015435          404 TRMG  407 (407)
Q Consensus       404 ~~~~  407 (407)
                      +++|
T Consensus       395 ~~~~  398 (402)
T TIGR01821       395 DRLG  398 (402)
T ss_pred             HHcC
Confidence            8765

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK07179 hypothetical protein; Provisional

Probab=99.94  E-value=3.8e-24  Score=205.26  Aligned_cols=326  Identities=15%  Similarity=0.148  Sum_probs=212.0

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc---ccC-CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV---KEY-LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~y-~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ++..++||+...+   .+....+.+++++.+++.+.....   ..+ .......++++.+++++ +.       +.+++ 
T Consensus        52 ~g~~~~~~~~~~Y---L~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~-g~-------~~~~~-  119 (407)
T PRK07179         52 PGPDAIILQSNDY---LNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFT-GF-------ESCLL-  119 (407)
T ss_pred             CCCcEEEeecCCc---cCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHh-CC-------CcEEE-
Confidence            5678899998887   344556677777777775211111   111 11234678888999987 53       56788 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEe
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH  184 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~  184 (407)
                       ++||++|+..+++  ....+||.|++..+.|......+...|.+++.++.       .|++++++.+.+. .++++++ 
T Consensus       120 -~~sG~~An~~~l~--~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~-~~~lV~v-  187 (407)
T PRK07179        120 -CQSGWAANVGLLQ--TIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVDHLRRQIERH-GPGIIVV-  187 (407)
T ss_pred             -ECCHHHHHHHHHH--HhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHHHHHHHHHhc-CCeEEEE-
Confidence             9999999999853  34668999999999988888888888888766533       4889999998721 2445555 


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcce
Q 015435          185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGA  264 (407)
Q Consensus       185 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  264 (407)
                      ++++||||.+.+   +++|+++|++||+++|+||+|.....+ ..... .+..+.......+++.|+||.++   .|+|+
T Consensus       188 ~~v~n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g-~~g~g-~~~~~~~~~~vdi~~~S~sK~~g---~~~G~  259 (407)
T PRK07179        188 DSVYSTTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHG-PQGAG-LVAELGLTSRVHFITASLAKAFA---GRAGI  259 (407)
T ss_pred             CCCCCCCCcccc---HHHHHHHHHHcCCEEEEECcccccCcC-CCCCc-hHHhcCCCCCCCEEEeechHhhh---ccCeE
Confidence            889999999887   678888899999999999999743332 11111 11112111123588899999986   36899


Q ss_pred             eEEeecChhhHHHHHHHHhhhhhc--ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015435          265 LSIVCKTEDVASRVESQLKLVIRP--MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP  342 (407)
Q Consensus       265 ~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  342 (407)
                      +  +++ ++    +.+.+......  ...+.+.....++.++++..       ...+..+++++++++++.+.|+++|  
T Consensus       260 l--~~~-~~----~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~-------~~~~~~~~~l~~~~~~l~~~L~~~g--  323 (407)
T PRK07179        260 I--TCP-RE----LAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVI-------ESADDRRARLHANARFLREGLSELG--  323 (407)
T ss_pred             E--EeC-HH----HHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcC--
Confidence            8  455 44    33333322211  11122333233333333321       2234567889999999999999886  


Q ss_pred             CCcccccCCceeEEecCC----CHHHHHHhHhhccEEE----cCC-----C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          343 GDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYM----TSD-----G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~----~~g-----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                        +.+. ..+.+ .++.+    +.+.+...|.++||.+    .|+     +  ||+++. .+++|+++++++|++++++.
T Consensus       324 --~~v~-~~~~i-~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  399 (407)
T PRK07179        324 --YNIR-SESQI-IALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEV  399 (407)
T ss_pred             --CCCC-CCCCE-EEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence              5544 33443 33322    2345666677789973    332     2  998875 58899999999999998764

>PLN02242 methionine gamma-lyase

Probab=99.94  E-value=2.3e-24  Score=205.13  Aligned_cols=279  Identities=11%  Similarity=0.129  Sum_probs=191.5

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-----hcC
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-----LAG  147 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-----~~G  147 (407)
                      +.....+|++.++++. +.       +.+++  ++||++|+.+++  ...+.+||+|+++.|.|..+...+.     ..|
T Consensus        74 ~~Pt~~~LE~~lA~l~-g~-------~~~l~--~~sG~~Ai~~al--~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G  141 (418)
T PLN02242         74 FNPTVLNLGRQMAALE-GT-------EAAYC--TASGMSAISSVL--LQLCSSGGHVVASNTLYGGTHALLAHFLPRKCN  141 (418)
T ss_pred             CChhHHHHHHHHHHHh-CC-------CeEEE--EccHHHHHHHHH--HHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccC
Confidence            3556788999999987 53       56778  999999999984  5558899999999999988876653     467


Q ss_pred             ceeeEEEeecCCCCCcChhhHHHHHHcCC-CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435          148 LSVKTYRYYDPATRGLNFQGLLEDLRAAP-SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASG  226 (407)
Q Consensus       148 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~  226 (407)
                      .+++.++.       .|++++++++.  + +++++++ ++|+||||.+.   ++++|+++|++||++||+|++|..+.+.
T Consensus       142 ~~~~~~d~-------~d~e~l~~~i~--~~~tklV~l-esp~NPtG~v~---dl~~I~~la~~~gi~livDea~~~~~~~  208 (418)
T PLN02242        142 ITTTFVDI-------TDLEAVKKAVV--PGKTKVLYF-ESISNPTLTVA---DIPELARIAHEKGVTVVVDNTFAPMVLS  208 (418)
T ss_pred             ceEEEcCC-------CCHHHHHHhcC--cCCCEEEEE-ecCCCCCCccc---CHHHHHHHHHHhCCEEEEECCCCccCCC
Confidence            77766644       38899999887  4 3677777 89999999976   6889999999999999999999766542


Q ss_pred             CCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhh--cccCCCChhHHHHHHH
Q 015435          227 SLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIR--PMYSSPPIHGASIVAT  303 (407)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  303 (407)
                      .     .      . ....++++|+||.++.+|+++ ||+  + .++++.+.    +.....  ....+++...|.+...
T Consensus       209 ~-----~------~-~g~divv~S~SK~l~g~g~~~gG~i--v-~~~~li~~----l~~~~~~~~~~~g~~~~~~~A~l~  269 (418)
T PLN02242        209 P-----A------R-LGADVVVHSISKFISGGADIIAGAV--C-GPAELVNS----MMDLHHGALMLLGPTMNPKVAFEL  269 (418)
T ss_pred             H-----H------H-cCCcEEEEeCccccCCCCCceEEEE--E-cCHHHHHH----HHHHhhhhhhccCCCCCHHHHHHH
Confidence            1     1      1 124688999999999899885 777  4 44544444    333322  1223445555666665


Q ss_pred             HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-------------c---cCCceeEEecCCCHHHHHH
Q 015435          304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH-------------I---IKQIGMFTFTGLNSEQVAF  367 (407)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~  367 (407)
                      +....        .+....+++.++++++.+.|++.+....+.-             .   ...||++.|.--+.+.+.+
T Consensus       270 ~~~l~--------tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~  341 (418)
T PLN02242        270 SERLP--------HLSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANR  341 (418)
T ss_pred             HcCCC--------cHHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHHHH
Confidence            55432        2445667888999999999998752110000             0   1235555543224455555


Q ss_pred             hHhhccEE-------EcCC-------------------------C------eEEecCCCCC-ChhHHHHHHHHHHHhh
Q 015435          368 MTKEYHIY-------MTSD-------------------------G------RISMAGLSSK-TVPHLTDAIHAAVTRM  406 (407)
Q Consensus       368 ~l~~~gi~-------~~~g-------------------------g------Ris~~~~~~e-~i~~~~~~l~~~l~~~  406 (407)
                      ++++..+.       +.-|                         |      |||++-   | +.+.+++-|+++|+.+
T Consensus       342 f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl---E~~~~dli~dl~~al~~~  416 (418)
T PLN02242        342 LMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGY---TGTLEQRWSQFEKALSAM  416 (418)
T ss_pred             HHHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecC---CCCHHHHHHHHHHHHHHh
Confidence            55543322       2222                         1      888773   7 4999999999999865

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.94  E-value=2.7e-24  Score=206.06  Aligned_cols=332  Identities=11%  Similarity=0.058  Sum_probs=214.8

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      .+++++||+..|....+.| ...+.+++++.+++. .......+.+.....++.+.++++. +.       +.+++  ++
T Consensus        38 ~~g~~~lD~~~~~~~~~~G-h~~~~i~~a~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~-~~-------~~~~~--~~  105 (401)
T PRK00854         38 TDGNRYLDCLSAYSAVNQG-HCHPKILAAMVEQAG-RLTLTSRAFRNDQLAPLYEELAALT-GS-------HKVLP--MN  105 (401)
T ss_pred             CCCCEEEEcCcchhhccCC-CCCHHHHHHHHHHHh-hccccccccCCHHHHHHHHHHHhhC-CC-------CEEEE--eC
Confidence            4578999998886544455 557778888888876 2111111223334556777777754 32       57999  99


Q ss_pred             CcccHHHHHHHHHHhhc-------CC-CeEEecCCCCCChHHHHhhcCc-------------eeeEEEeecCCCCCcChh
Q 015435          108 SGTGSLRVGAEFLARHY-------HQ-LTIYIPQPTWGNHPKVFTLAGL-------------SVKTYRYYDPATRGLNFQ  166 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~-------~g-d~Vi~~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~  166 (407)
                      ||++|++.+++++....       +| ++|++..-+|++....+...+.             ++..++.       .|++
T Consensus       106 SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~  178 (401)
T PRK00854        106 SGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-------GDAE  178 (401)
T ss_pred             CcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-------CCHH
Confidence            99999999987775441       23 6888888777765443332221             1222221       3789


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPT-LEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      ++++.+.  ++++++++ .+|+||||.+++ .+++++|+++|++||+++|+||+|.++++.+   ............+ +
T Consensus       179 ~le~~i~--~~~~aii~-e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g---~~~~~~~~g~~~D-~  251 (401)
T PRK00854        179 ALEAAIT--PNTVAFLV-EPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTG---KLLAEEHEGIEAD-V  251 (401)
T ss_pred             HHHHHhC--CCeEEEEE-ccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---hHhHHhhcCCCCC-E
Confidence            9999887  56677666 899999999987 4569999999999999999999998877653   1121111111122 2


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                      ++   ++|.++...+|+||+  +++ +    ++.+.+.......+++.+++.+.++.+.|+...      +  ....+++
T Consensus       252 ~~---~~K~l~gg~~~ig~v--~~~-~----~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~------~--~~~~~~~  313 (401)
T PRK00854        252 TL---IGKALSGGFYPVSAV--LSN-S----EVLGVLKPGQHGSTFGGNPLACAVARAALKVLT------E--EGMIENA  313 (401)
T ss_pred             EE---ecccccCCccCeEEE--EEc-H----HHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHH------H--cCHHHHH
Confidence            22   469887444799999  565 3    344444433333344678888888888776331      1  2356778


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCceeEEec--C--CCHHHHHHhHhhccEEEcCCC----eEEec-CCCCCChhHHH
Q 015435          326 ISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT--G--LNSEQVAFMTKEYHIYMTSDG----RISMA-GLSSKTVPHLT  396 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~~~~  396 (407)
                      +++.+++.+.|++++... .....+.+.++.+.  +  .+...+.+.|.++||.+.+.+    |+++. ..+++++++++
T Consensus       314 ~~~~~~l~~~L~~~~~~~-~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i  392 (401)
T PRK00854        314 AEMGAYFLEGLRSIRSNI-VREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQVDWAL  392 (401)
T ss_pred             HHHHHHHHHHHHhhccCc-eEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEecCCCCEEEEeCCcccCHHHHHHHH
Confidence            888899999998875210 11224456655542  2  123334444445799998653    78764 25889999999


Q ss_pred             HHHHHHHH
Q 015435          397 DAIHAAVT  404 (407)
Q Consensus       397 ~~l~~~l~  404 (407)
                      ++|++++.
T Consensus       393 ~~l~~~l~  400 (401)
T PRK00854        393 EQIAKVLA  400 (401)
T ss_pred             HHHHHHhh
Confidence            99998874

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.94  E-value=6.9e-24  Score=203.66  Aligned_cols=329  Identities=16%  Similarity=0.116  Sum_probs=208.3

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-----ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-----KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      +++.++|+...+   .|...++.+++++.+++. .....     ..|.+.....++++++++++ +.       +..++ 
T Consensus        45 ~~~~~~~~s~dy---lgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~g~~~~~~~l~~~la~~~-g~-------~~~~~-  111 (407)
T PRK09064         45 EREVTVWCSNDY---LGMGQHPKVIEAMIEALD-RCGAGAGGTRNISGTNHYHVELERELADLH-GK-------EAALV-  111 (407)
T ss_pred             CceEEEEECCCC---cCCCCCHHHHHHHHHHHH-HcCCCCCCcCcCccCHHHHHHHHHHHHHHh-CC-------CcEEE-
Confidence            467899998876   675666677777777665 11111     11334445778899999877 42       34455 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC--CCCcEEE
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--PSGAIVL  182 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--~~~~~v~  182 (407)
                       .++|++++..++..+....+++.|+.....|......+...|.++..++.       .|++++++.+...  +++++++
T Consensus       112 -~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~  183 (407)
T PRK09064        112 -FTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIA  183 (407)
T ss_pred             -ECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEE
Confidence             55666787776544432336666666656666666666777777655543       3677888777632  2345555


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc-CCcEEEEEecCccccccCCC
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD-GGECLVAQSYAKNMGLYGER  261 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~r  261 (407)
                      + ++++||+|.+.+   +++|.++|++||++||+||+|....++.. ..  .+...... .+..++++||||.||++|  
T Consensus       184 ~-~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~-g~--g~~~~~~~~~~~div~~t~sKa~g~~G--  254 (407)
T PRK09064        184 F-ESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPR-GG--GIAERDGLMDRIDIIEGTLAKAFGVMG--  254 (407)
T ss_pred             E-eCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCC-CC--ChHHhcCCCCCCeEEEEecchhhhccC--
Confidence            5 899999999775   78888889999999999999973322211 11  11111111 234788999999999877  


Q ss_pred             cceeEEeecChhhHHHHHHHHhhhhhcc--cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435          262 VGALSIVCKTEDVASRVESQLKLVIRPM--YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR  339 (407)
Q Consensus       262 ~G~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  339 (407)
                       ||+  ++ ++++.+.    +......+  ..+.++.++.++.+.++..       +.....+++++++++++.+.|++.
T Consensus       255 -G~~--~~-~~~~~~~----l~~~~~~~~~t~~~~~~~~~aa~~al~~~-------~~~~~~~~~~~~~~~~l~~~L~~~  319 (407)
T PRK09064        255 -GYI--AG-SAALVDA----VRSYAPGFIFTTSLPPAIAAAALASIRHL-------KESNEERERHQERAAKLKAALDAA  319 (407)
T ss_pred             -ceE--ec-CHHHHHH----HHHhCccccccCcCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHc
Confidence             888  44 4444443    33322221  2244555566665555422       112344678889999999999988


Q ss_pred             CCCCCcccccCCceeEEec-CC--CH-HHHHHhHhhccEEEcCC-------C----eEEecC-CCCCChhHHHHHHHHHH
Q 015435          340 GTPGDWSHIIKQIGMFTFT-GL--NS-EQVAFMTKEYHIYMTSD-------G----RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~-~~--~~-~~~~~~l~~~gi~~~~g-------g----Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      |    +++..+.++++.+. +-  .. +...++++++||.+.+.       |    ||+++. .+++|++++++.|++++
T Consensus       320 g----~~~~~~~~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~  395 (407)
T PRK09064        320 G----IPVMPNESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVW  395 (407)
T ss_pred             C----CCCCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            7    56555555543322 22  22 23445666679998642       2    888764 47899999999999998


Q ss_pred             HhhC
Q 015435          404 TRMG  407 (407)
Q Consensus       404 ~~~~  407 (407)
                      ++++
T Consensus       396 ~~~~  399 (407)
T PRK09064        396 ARLG  399 (407)
T ss_pred             HHcC
Confidence            7654

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.94  E-value=6.2e-24  Score=200.69  Aligned_cols=283  Identities=15%  Similarity=0.104  Sum_probs=185.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEe
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRY  155 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~  155 (407)
                      -+.++++.+++++ +.       +++++  |+|+++++.+++  ...+.+||+|+++.++|.+....++..|++++.++.
T Consensus        45 ~~~~l~~~la~~~-g~-------~~i~~--~~g~t~al~~~l--~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~  112 (361)
T cd06452          45 PIKDFHHDLAEFL-GM-------DEARV--TPGAREGKFAVM--HSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPN  112 (361)
T ss_pred             hHHHHHHHHHHHc-CC-------ceEEE--eCCHHHHHHHHH--HHhcCCCCEEEEcCCcchHHHHHHHhcCCEEEEEec
Confidence            4678899999987 53       68999  999999999884  444789999999999888777788899999999998


Q ss_pred             ecCCCCCcChhhHHHHHHcC-----CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          156 YDPATRGLNFQGLLEDLRAA-----PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       156 ~~~~~~~~d~~~l~~~i~~~-----~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.+.++.+|++.+++.+.+.     ++++++++ ++|+||||..   .++++|+++|+++|+++|+|++|...... .  
T Consensus       113 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l-~~p~n~tG~~---~~~~~i~~~~~~~~~~vivD~a~~~g~~~-~--  185 (361)
T cd06452         113 TGHPEYHITPEGYAEVIEEVKDEFGKPPALALL-THVDGNYGNL---HDAKKIAKVCHEYGVPLLLNGAYTVGRMP-V--  185 (361)
T ss_pred             CCCCCcccCHHHHHHHHHHHhhccCCCceEEEE-ECCCCCCeee---ccHHHHHHHHHHcCCeEEEECCcccCCcC-C--
Confidence            42223589999999988631     24566666 8999999985   56889999999999999999998743211 1  


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcc--------cCCCChhHHHHHH
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPM--------YSSPPIHGASIVA  302 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~  302 (407)
                         ...    ..+..++++|++|.++ ++.|+||+  +++ +++.+    ++......+        ..+.....+..+.
T Consensus       186 ---~~~----~~~~d~~~~s~~K~l~-~~~~~G~l--~~~-~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (361)
T cd06452         186 ---SGK----ELGADFIVGSGHKSMA-ASAPIGVL--ATT-EEWAD----IVFRTSQMFKIKEVELLGCTLRGAPLVTLM  250 (361)
T ss_pred             ---CHH----HcCCCEEEecCCcccc-CCCCeEEE--EEC-HHHHH----HHhccccccccceeeeeccccCchHHHHHH
Confidence               111    1235689999999998 45699998  455 44333    333322111        0111111222233


Q ss_pred             HHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcccc---cCCceeEEec--CC---------CHHHHHH
Q 015435          303 TILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR-GTPGDWSHI---IKQIGMFTFT--GL---------NSEQVAF  367 (407)
Q Consensus       303 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~---~~~~~~~~~~--~~---------~~~~~~~  367 (407)
                      ..++..      .+..+.. ++..++++++.+.|+++ |    +++.   ....++..+.  ++         ....+.+
T Consensus       251 ~al~~~------~~~~~~~-~~~~~~~~~l~~~L~~l~g----~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~  319 (361)
T cd06452         251 ASFPHV------KERVKRW-DEEVEKARWFVAELEKIEG----IKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYS  319 (361)
T ss_pred             HHHHHH------HHHHHHH-HHHHHHHHHHHHHHhcCCC----eEEECCCCCCCceEEEEcCCcchhhhhccccchhHHH
Confidence            222211      1223222 22334557888999887 5    5543   2222332221  11         1113445


Q ss_pred             hHhhccEEEcCCC-----eEEecCCCCCChhHHHHHHHHHH
Q 015435          368 MTKEYHIYMTSDG-----RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       368 ~l~~~gi~~~~gg-----Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      .|.++||.+...|     |++..+.++++++.++++|+++.
T Consensus       320 ~L~~~gI~~~~~~~~~~~ri~~~g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         320 ELKKRGIHGIKPGLTRYFKLSTYGLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             HHHHcCceEEcCCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            5555799975544     78774458899999999998764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK07049 methionine gamma-lyase; Validated

Probab=99.94  E-value=1.3e-23  Score=200.79  Aligned_cols=283  Identities=15%  Similarity=0.135  Sum_probs=196.8

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~  148 (407)
                      +......|++.++++. +.       +++++  ++||++++.++  +...+.+||.|++++|.|..+...+    ...|+
T Consensus        81 ~~Pt~~~Le~~lA~le-g~-------~~~iv--~~sG~~Ai~~~--l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi  148 (427)
T PRK07049         81 NHPNSEIVEDRLAVYE-GA-------ESAAL--FSSGMSAIATT--LLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGV  148 (427)
T ss_pred             CCcCHHHHHHHHHHHh-CC-------CcEEE--EccHHHHHHHH--HHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCc
Confidence            4556789999999988 43       67888  99999999888  4556889999999999999997764    46788


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHc---CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHH---cCceeeecccccc
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRA---APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS---KGLLPFFDSAYQG  222 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~---~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~---~~~~li~D~~y~~  222 (407)
                      +++.++.      +.|++.+++.+.+   .++++++++ ++|+||||.+++.+++.+|++.|.+   +++++|+|++|..
T Consensus       149 ~~v~~~~------~~d~~~l~~~l~~~~~~~~tklv~l-esP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~  221 (427)
T PRK07049        149 GAVGFAD------GLSEAAIGAAAEAAAAKGRVSLILI-ETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLG  221 (427)
T ss_pred             EEEEEeC------CCCHHHHHHHHHhhccCCCceEEEE-ECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccc
Confidence            8777752      2467778777642   135677777 8999999999999999999888754   6899999999865


Q ss_pred             ccCCCCCchhHHHHHHHHcCCcEEEEEecCcccc-ccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHH
Q 015435          223 FASGSLDADAQSVRMFVADGGECLVAQSYAKNMG-LYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIV  301 (407)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (407)
                      .....      ++    . ....+++.|+||.++ .+|+|+||+  +++ ++    +.+.+.........+.+...+.++
T Consensus       222 ~~~~~------pl----~-~g~divv~S~SK~~gG~~glr~G~v--v~~-~~----l~~~l~~~~~~~g~~ls~~~a~l~  283 (427)
T PRK07049        222 PVFQK------PL----E-HGADLSVYSLTKYVGGHSDLVAGAV--LGR-KA----LIRQVRALRSAIGTQLDPHSCWML  283 (427)
T ss_pred             cccCC------cc----c-cCCCEEEEcCceeecCCCCcEEEEE--ECC-HH----HHHHHHHHHHhcCCCCCHHHHHHH
Confidence            54321      11    1 234688899999999 699999999  444 44    444444454444556777778877


Q ss_pred             HHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-----------------cCCceeEEec-CCCHH
Q 015435          302 ATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI-----------------IKQIGMFTFT-GLNSE  363 (407)
Q Consensus       302 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----------------~~~~~~~~~~-~~~~~  363 (407)
                      ...++.          +....++..++++.+.+.|++.+.-..+.+.                 ...||++.+. .-+.+
T Consensus       284 ~r~L~t----------l~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~  353 (427)
T PRK07049        284 GRSLET----------LVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQA  353 (427)
T ss_pred             HcCCCh----------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCHH
Confidence            766653          3344455688889999999876420000000                 1235666654 22445


Q ss_pred             HHHHhHhhccEEEc---CC-------------------------C------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          364 QVAFMTKEYHIYMT---SD-------------------------G------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       364 ~~~~~l~~~gi~~~---~g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+.++++...+...   =|                         |      |||++-   |+.+.+++-|.++|+.
T Consensus       354 ~~~~f~~~l~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~  426 (427)
T PRK07049        354 AAFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGI---EHPDDLIADLAQALDA  426 (427)
T ss_pred             HHHHHHHcCcccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCc---CCHHHHHHHHHHHHhc
Confidence            55556555444331   11                         1      888773   8899999999998863

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.93  E-value=6.5e-24  Score=201.99  Aligned_cols=331  Identities=14%  Similarity=0.087  Sum_probs=211.2

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccc------cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR------VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      +++|||.--.   ..| |.+..+++++.+... ....      ...+.....+.++++.+++++ +.       +++++ 
T Consensus        18 ~~~~~~~~~~---~~~-p~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~-g~-------~~~~~-   83 (387)
T PRK09331         18 EEFINLDPIQ---RGG-ILTPEARKALIEYGD-GYSVCDYCPGRLDQIKKPPIADFHEDLAEFL-GM-------DEARV-   83 (387)
T ss_pred             ccccccChhh---cCC-CCCHHHHHHHHHHHh-ccCCCcccccccccccChHHHHHHHHHHHHh-CC-------CcEEE-
Confidence            5677776322   245 777777777766653 1111      111222335889999999988 54       57888 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-----CCCc
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-----PSGA  179 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-----~~~~  179 (407)
                       |+|+++++.+++  ...+.+||+|+++.++|......++..|++++.++...++++.+|++.+++.+.+.     ++++
T Consensus        84 -~~g~t~a~~~al--~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~  160 (387)
T PRK09331         84 -THGAREGKFAVM--HSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPA  160 (387)
T ss_pred             -eCCHHHHHHHHH--HHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCE
Confidence             999999999884  44578999999999998888888889999999998732345779999999998742     2456


Q ss_pred             EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC
Q 015435          180 IVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG  259 (407)
Q Consensus       180 ~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  259 (407)
                      ++++ ++|+||||.+   .++++|+++|++||+++++|++|+..... .  +   ..    ..+..+++.|++|.++ .+
T Consensus       161 lV~l-~~~~~~tG~~---~~l~~I~~la~~~g~~livD~a~~~g~~~-~--~---~~----~~g~D~~~~s~~K~l~-~~  225 (387)
T PRK09331        161 LALL-THVDGNYGNL---ADAKKVAKVAHEYGIPFLLNGAYTVGRMP-V--D---GK----KLGADFIVGSGHKSMA-AS  225 (387)
T ss_pred             EEEE-ECCCCCCccc---ccHHHHHHHHHHcCCEEEEECCcccCCcC-C--C---HH----HcCCCEEEeeCccccc-CC
Confidence            6666 8899999984   46889999999999999999998643211 1  1   11    1234688999999998 45


Q ss_pred             CCcceeEEeecChhhHHHHHHHHhhhh----hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015435          260 ERVGALSIVCKTEDVASRVESQLKLVI----RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDA  335 (407)
Q Consensus       260 ~r~G~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (407)
                      .|+|++  +++ +++.+.+......+.    .....+.+.....++...++.      +.+.. +..++..++++++.+.
T Consensus       226 ~~~G~l--~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~------~~~~~-~~~~~~~~~~~~l~~~  295 (387)
T PRK09331        226 APSGVL--ATT-EEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPH------VVERV-KRWDEEVKKARWFVDE  295 (387)
T ss_pred             CCEEEE--EEC-HHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHHHHH
Confidence            689998  454 443333322111000    001111221122222222221      11222 2345556777899999


Q ss_pred             HHhc-CCCCCccccc---CCceeEEe--cCC---------CHHHHHHhHhhccEEEcCCC-----eEEecCCCCCChhHH
Q 015435          336 LSAR-GTPGDWSHII---KQIGMFTF--TGL---------NSEQVAFMTKEYHIYMTSDG-----RISMAGLSSKTVPHL  395 (407)
Q Consensus       336 l~~~-~~~~~~~~~~---~~~~~~~~--~~~---------~~~~~~~~l~~~gi~~~~gg-----Ris~~~~~~e~i~~~  395 (407)
                      |+++ |    +++..   ...++..+  ..+         +...+.+.|.++||...+.+     |+...+.++++++++
T Consensus       296 L~~l~g----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l  371 (387)
T PRK09331        296 LEKIEG----FKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLSTYGLTWEQVEYV  371 (387)
T ss_pred             HhcCCC----EEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEccCCceEEEEEeccCCHHHHHHH
Confidence            9988 5    55442   22222211  111         11335555667899854433     665533588999999


Q ss_pred             HHHHHHHHHhhC
Q 015435          396 TDAIHAAVTRMG  407 (407)
Q Consensus       396 ~~~l~~~l~~~~  407 (407)
                      +++|+++++++|
T Consensus       372 ~~aL~~i~~~~~  383 (387)
T PRK09331        372 ADAFKEIAEKYG  383 (387)
T ss_pred             HHHHHHHHHhcC
Confidence            999999988754

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.93  E-value=9.3e-24  Score=200.22  Aligned_cols=320  Identities=15%  Similarity=0.130  Sum_probs=209.2

Q ss_pred             cccchhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH  125 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~  125 (407)
                      |.|....+++.+++. ...  ..+.+  ..-..++|+.+++++ +...   ..+.+++  |+|||+++..++  .....+
T Consensus        11 pgP~~~~~~~~~a~~-~~~--~~~~~~~~~~~~~~~~~l~~l~-~~~~---~~~~i~~--~~~gt~~l~~~~--~~l~~~   79 (368)
T PRK13479         11 PGPLTTSRTVREAML-RDW--GSWDDDFNALTASVRAKLVAIA-TGEE---GYTCVPL--QGSGTFSVEAAI--GSLVPR   79 (368)
T ss_pred             CCCCCCCHHHHHHhC-CCC--CCCChHHHHHHHHHHHHHHHHh-CCCC---CceEEEE--cCCcHHHHHHHH--HhccCC
Confidence            666667777777775 221  22222  234678888888887 4311   1245778  999999999994  555678


Q ss_pred             CCeEEecCCCCCCh--HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435          126 QLTIYIPQPTWGNH--PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI  203 (407)
Q Consensus       126 gd~Vi~~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i  203 (407)
                      ||+|++++++|.+.  ...++..|++++.++.  +.++.+|++++++.+++.++.+++++ ++++||||...+   +++|
T Consensus        80 ~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~--~~~~~~d~~~l~~~l~~~~~~~~v~~-~~~~~~tG~~~~---~~~i  153 (368)
T PRK13479         80 DGKVLVPDNGAYGARIAQIAEYLGIAHVVLDT--GEDEPPDAAEVEAALAADPRITHVAL-VHCETTTGILNP---LDEI  153 (368)
T ss_pred             CCeEEEEeCCchHHHHHHHHHHcCCcEEEEEC--CCCCCCCHHHHHHHHHhCCCCcEEEE-EcccCccccccC---HHHH
Confidence            99999998887665  3677889999999998  33467899999999874444556666 899999999876   6788


Q ss_pred             HHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc-cccCCCcceeEEeecChhhHHHHHHHH
Q 015435          204 RQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASRVESQL  282 (407)
Q Consensus       204 ~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~~~~~~  282 (407)
                      +++|+++|+++|+|+ ++.++..+     ..+   ... +..+++.|++|.+ +.+|  +||+  +++ ++..+.+....
T Consensus       154 ~~l~~~~~~~livDa-~~~~g~~~-----~~~---~~~-~~d~~v~s~~K~l~g~~G--~G~l--~~~-~~~~~~~~~~~  218 (368)
T PRK13479        154 AAVAKRHGKRLIVDA-MSSFGAIP-----IDI---AEL-GIDALISSANKCIEGVPG--FGFV--IAR-RSELEACKGNS  218 (368)
T ss_pred             HHHHHHcCCEEEEEc-ccccCCcc-----ccc---ccc-CceEEEecCccccccCCC--ceEE--EEC-HHHHHHhhcCC
Confidence            888999999999996 44554321     111   111 2336668999965 6677  5998  455 44333332211


Q ss_pred             hh--------h-----hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          283 KL--------V-----IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       283 ~~--------~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      ..        .     ......+++...+.++..+++...  +  ....++.++++.++++++.+.|++.|    +....
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~--~--~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~  290 (368)
T PRK13479        219 RSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELE--E--EGGVPARGARYANNQRTLVAGMRALG----FEPLL  290 (368)
T ss_pred             CCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHH--H--hhCHHHHHHHHHHHHHHHHHHHHHcC----CcccC
Confidence            00        0     011112455555555544443211  0  01256677889999999999999887    44322


Q ss_pred             C-----CceeEEecC----CCHHHHHHhHhhccEEEcCCC-------eEEe-cCCCCCChhHHHHHHHHHHHhhC
Q 015435          350 K-----QIGMFTFTG----LNSEQVAFMTKEYHIYMTSDG-------RISM-AGLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       350 ~-----~~~~~~~~~----~~~~~~~~~l~~~gi~~~~gg-------Ris~-~~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      +     .+....+..    .+.+.+.+.|.++||.+.++.       |++. +..+++++++++++|+++++++|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~  365 (368)
T PRK13479        291 DAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG  365 (368)
T ss_pred             CchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            2     111222222    345566666666899998762       9975 55688999999999999998765

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.93  E-value=6.5e-24  Score=204.09  Aligned_cols=348  Identities=10%  Similarity=0.075  Sum_probs=223.8

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++.++|+..|....+.| ..++.+.+++.+++.  .. .+.+.+..+.+.. .++++.+....+... .+.+++  +
T Consensus        37 d~dG~~~lD~~~g~~~~~lG-h~~~~i~~a~~~~~~--~~-~~~~~~~~~~~~~-~~la~~l~~~~~~~~-~~~~~f--~  108 (425)
T PRK08088         37 DVEGREYLDFAGGIAVLNTG-HLHPKVVAAVEAQLK--KL-SHTCFQVLAYEPY-LELCEKMNQKVPGDF-AKKTLL--V  108 (425)
T ss_pred             eCCCCEEEEcCCchhhcCCC-CCCHHHHHHHHHHHh--hC-CCccccccCCHHH-HHHHHHHHHhCCCCC-CCEEEE--e
Confidence            34678999999987655566 567788888877775  21 1222222223332 345555533221111 157888  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceee--------------EEEeecCCCCCcC----hhhH
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVK--------------TYRYYDPATRGLN----FQGL  168 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~--------------~v~~~~~~~~~~d----~~~l  168 (407)
                      ++|++|++.++++...+.....|+..+++|++....+...+....              .++...+. .+.+    ++.+
T Consensus       109 ~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~l  187 (425)
T PRK08088        109 TTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPL-HGVSEDDAIASI  187 (425)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccc-cCccHHHHHHHH
Confidence            999999999998877766667788889999988766655433211              11110011 1122    4567


Q ss_pred             HHHHHc---CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          169 LEDLRA---APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       169 ~~~i~~---~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      ++.+..   .....++++.+..+|++....+.+.+++|.++|++||+++|+||+|.++.+.+   ...+....    ...
T Consensus       188 ~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g---~~~~~~~~----~~~  260 (425)
T PRK08088        188 ERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG---TLFAMEQM----GVA  260 (425)
T ss_pred             HHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---chhHHhhc----CCC
Confidence            777752   23456777777778888888999999999999999999999999999877643   22222221    223


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                      .-+.||||.++ +|+|+||+  +++     ..+.+.+.......+.+++++.|.++..+++...    ..+.+++.++..
T Consensus       261 pdi~s~sK~l~-~G~rig~v--~~~-----~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~  328 (425)
T PRK08088        261 ADLTTFAKSIA-GGFPLAGV--TGR-----AEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFE----QENLLQKANALG  328 (425)
T ss_pred             CCEEEEecccc-CCCcceee--Eec-----HHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHH----hcCHHHHHHHHH
Confidence            44789999999 89999999  565     4455555444445566788899999999887542    123344455544


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC----C--------HHHHHHhHhhccEEEcCCC------eEEecC-
Q 015435          326 ISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----N--------SEQVAFMTKEYHIYMTSDG------RISMAG-  386 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~l~~~gi~~~~gg------Ris~~~-  386 (407)
                      +++++.+.+.....+.   +...... |++.|+.+    +        ...+...+.++||.+.+++      |++++. 
T Consensus       329 ~~~~~~l~~l~~~~~~---~~~v~g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~  404 (425)
T PRK08088        329 EKLKDGLLAIAEKHPE---IGDVRGL-GAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLT  404 (425)
T ss_pred             HHHHHHHHHHHHhCCC---eEEEecc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCC
Confidence            4444444444333331   2222222 67777755    1        2234444455898887753      888874 


Q ss_pred             CCCCChhHHHHHHHHHHHhh
Q 015435          387 LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+++++++++++|+++++..
T Consensus       405 ~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        405 IEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             cCHHHHHHHHHHHHHHHHhh
Confidence            57899999999999998764

>PRK02948 cysteine desulfurase; Provisional

Probab=99.93  E-value=2.3e-24  Score=205.32  Aligned_cols=287  Identities=15%  Similarity=0.160  Sum_probs=196.7

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh--hcCCCeEEecCCCCCChHH---HHhhcCceee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR--HYHQLTIYIPQPTWGNHPK---VFTLAGLSVK  151 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~--~~~gd~Vi~~~p~y~~~~~---~~~~~G~~~~  151 (407)
                      ++++|+.+++++ +.     ++++|++  |+|+|+++..++..+..  ..+||.|+++...|+.+..   .++..|.+++
T Consensus        45 ~~~~r~~la~~~-g~-----~~~~i~~--~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~  116 (381)
T PRK02948         45 LQVCRKTFAEMI-GG-----EEQGIYF--TSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVT  116 (381)
T ss_pred             HHHHHHHHHHHh-CC-----CCCeEEE--eCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEE
Confidence            567788888887 42     2478999  99999999887533321  1478999999877766544   4567799999


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      .++++  .++.+|++++++.+.  ++++++++ ++|+||||++.+   +++|.++|+++|+++++|++ ..+...+.  +
T Consensus       117 ~v~~~--~~~~~d~~~l~~~l~--~~~~lv~~-~~~~n~tG~~~~---~~~I~~l~~~~~~~vivD~~-~~~g~~~~--~  185 (381)
T PRK02948        117 EIPVD--KSGLIRLVDLERAIT--PDTVLASI-QHANSEIGTIQP---IAEIGALLKKYNVLFHSDCV-QTFGKLPI--D  185 (381)
T ss_pred             EEeeC--CCCCCCHHHHHHhcC--CCCEEEEE-ECCcCCcEeehh---HHHHHHHHHHcCCEEEEECh-hhcccccc--C
Confidence            99983  346789999999886  55666666 999999999875   67888889999999999975 44443211  1


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHh---hhhhcccCCCChhHHHHHHHHhcCh
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLK---LVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                         +    ......+++.|++|.+|.+|  +|++  +++ ++.  .+.....   ...+...++++.+++.++..+++..
T Consensus       186 ---~----~~~~~d~~~~s~~K~~gp~G--~G~l--~~~-~~~--~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~  251 (381)
T PRK02948        186 ---V----FEMGIDSLSVSAHKIYGPKG--VGAV--YIN-PQV--RWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENI  251 (381)
T ss_pred             ---c----ccCCCCEEEecHHhcCCCCc--EEEE--EEc-CCC--CCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHH
Confidence               1    12245678899999999888  6887  344 221  0100000   0011123467777788777777643


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC------cee--EEecCCCHHHHHHhHhhccEEEcC--
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ------IGM--FTFTGLNSEQVAFMTKEYHIYMTS--  378 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~l~~~gi~~~~--  378 (407)
                      .      +..++.++++++.++++.+.|++++    +.+....      ..+  |...+++.+.+...|+++||.+..  
T Consensus       252 ~------~~~~~~~~~~~~~~~~l~~~L~~~~----~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~  321 (381)
T PRK02948        252 L------KNMQEESLRFKELRSYFLEQIQTLP----LPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGS  321 (381)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHhcCC----CCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchH
Confidence            2      3467778999999999999999887    3222111      111  122345666555556778999973  


Q ss_pred             -----------------------CC--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          379 -----------------------DG--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       379 -----------------------gg--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                                             .+  |||++. .+++|++++++.|+++++.+
T Consensus       322 ~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~  375 (381)
T PRK02948        322 ACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQF  375 (381)
T ss_pred             hcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                   12  899875 47899999999999988653

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.93  E-value=1.2e-23  Score=200.88  Aligned_cols=324  Identities=13%  Similarity=0.083  Sum_probs=209.3

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL  127 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd  127 (407)
                      |.|..+.+++.+++.  ......+  ..+..++++.+++.+....+.. .++.+++  ++++|++++.++  ...+.+||
T Consensus        15 pGP~~~~~~V~~a~~--~~~~~~~--~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~--~~~gt~a~~~a~--~~~~~~Gd   85 (401)
T PLN02409         15 PGPVNIPERVLRAMN--RPNEDHR--SPAFPALTKELLEDVKYIFKTK-SGTPFIF--PTTGTGAWESAL--TNTLSPGD   85 (401)
T ss_pred             CCCCCCCHHHHHHhc--CCCCCCC--CHHHHHHHHHHHHHHHHHhCCC-CCCEEEE--eCCcHHHHHHHH--HhcCCCCC
Confidence            556666666666665  2122222  2344444444444442222211 1245777  889999998884  45578999


Q ss_pred             eEEecCCCCCCh--HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC--CCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435          128 TIYIPQPTWGNH--PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--PSGAIVLLHACAHNPTGVDPTLEQWEQI  203 (407)
Q Consensus       128 ~Vi~~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--~~~~~v~i~~~p~NPtG~~~~~~~l~~i  203 (407)
                      +|+++++.|.+.  ...++..|.+++.++.  +.+..+|++++++.+++.  ++++++++ ++++||||.+++.+++.++
T Consensus        86 ~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~--~~~~~~~~~~l~~~l~~~~~~~~k~v~~-~~~~~~tG~~~~~~~i~~l  162 (401)
T PLN02409         86 KVVSFRIGQFSLLWIDQMQRLNFDVDVVES--PWGQGADLDILKSKLRQDTNHKIKAVCV-VHNETSTGVTNDLAGVRKL  162 (401)
T ss_pred             EEEEeCCCchhHHHHHHHHHcCCceEEEEC--CCCCCCCHHHHHHHHhhCcCCCccEEEE-EeecccccccCCHHHHHHH
Confidence            999999888665  4667788999999998  334568999999999842  25677776 7889999999986666666


Q ss_pred             HHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH-
Q 015435          204 RQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL-  282 (407)
Q Consensus       204 ~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~-  282 (407)
                      ++ |+++|+++|+|++++ +...+.     .+    ...+..+++.|.+|.++.| .++||+  +.+ ++..+++.... 
T Consensus       163 ~~-~~~~g~~~vvD~v~s-~g~~~i-----d~----~~~~~D~~~~s~~K~l~~P-~G~G~l--~~~-~~~~~~~~~~~~  227 (401)
T PLN02409        163 LD-CAQHPALLLVDGVSS-IGALDF-----RM----DEWGVDVALTGSQKALSLP-TGLGIV--CAS-PKALEASKTAKS  227 (401)
T ss_pred             Hh-hhccCcEEEEEcccc-cCCccc-----cc----cccCccEEEEcCccccCcC-CCccee--EEC-HHHHHHHhcCCC
Confidence            66 999999999999875 222111     11    1113347777779998754 368999  455 44433332100 


Q ss_pred             ----------hhhhh---cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          283 ----------KLVIR---PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       283 ----------~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                                .....   ....+++...+.++..+++...     ....++.+++++++++++.+.|++.|    +....
T Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~-----~~G~e~i~~~~~~l~~~l~~~L~~~g----~~~~~  298 (401)
T PLN02409        228 PRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIF-----EEGLENVIARHARLGEATRLAVEAWG----LKLCT  298 (401)
T ss_pred             CCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHcC----Ceecc
Confidence                      00000   0122556666666666665321     23577888999999999999998887    44332


Q ss_pred             C----CceeEEec----CCCHHHH-HHhHhhccEEEcCC-----C---eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          350 K----QIGMFTFT----GLNSEQV-AFMTKEYHIYMTSD-----G---RISMAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       350 ~----~~~~~~~~----~~~~~~~-~~~l~~~gi~~~~g-----g---Ris~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      +    ..+...++    +++.+.+ ..+++++||.+.+|     |   ||+..+ .+.+++..++.+|+++++.+|
T Consensus       299 ~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g  374 (401)
T PLN02409        299 KKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG  374 (401)
T ss_pred             CChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            2    12222222    4455544 56778899999876     2   887654 678999999999999998764

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.93  E-value=2e-23  Score=201.37  Aligned_cols=332  Identities=15%  Similarity=0.102  Sum_probs=213.3

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc---CCC---CCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE---YLP---IVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---y~~---~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      .+++.|..+..    + +.|..+.++..+.+.........   |..   ...++++|+.+++++ +..    ++++|++ 
T Consensus        31 ~~~iyLd~a~~----~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~~----~~~~v~~-   99 (424)
T PLN02855         31 SKLVYLDNAAT----S-QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFI-NAS----TSREIVF-   99 (424)
T ss_pred             CCeEEeeCccc----c-CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHc-CCC----CCCEEEE-
Confidence            35677776653    4 55666776665555311111111   110   123568899999988 432    2378999 


Q ss_pred             ecCCcccHHHHHHHHHH--hhcCCCeEEecCCCCCCh----HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCC
Q 015435          105 QCLSGTGSLRVGAEFLA--RHYHQLTIYIPQPTWGNH----PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSG  178 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~--~~~~gd~Vi~~~p~y~~~----~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~  178 (407)
                       |+|+|+++..++..+.  .+.+||+|+++++.|+..    ....+..|++++.++.+  ..+.+|++++++.+.  +++
T Consensus       100 -t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~--~~~~~~~~~l~~~i~--~~t  174 (424)
T PLN02855        100 -TRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLT--PDEVLDVEQLKELLS--EKT  174 (424)
T ss_pred             -eCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHHhc--cCc
Confidence             9999999999854322  357899999999988753    34456789999999983  235689999999997  567


Q ss_pred             cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc
Q 015435          179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY  258 (407)
Q Consensus       179 ~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  258 (407)
                      +++++ ++++||||.+++   +++|+++|+++|+++++|+++.... .+.     .+    ...+..+++.|++|.+|.+
T Consensus       175 ~lv~i-~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~g~-~~~-----~~----~~~~~d~~~~s~~K~~gp~  240 (424)
T PLN02855        175 KLVAT-HHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQSVPH-MPV-----DV----QTLGADFLVASSHKMCGPT  240 (424)
T ss_pred             eEEEE-eCccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCC-cCC-----Cc----hhcCCCEEEeecccccCCC
Confidence            77776 899999999887   5677888999999999999974221 111     11    1122357799999987755


Q ss_pred             CCCcceeEEeecChhhHHHHHHHHhh-----------------hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          259 GERVGALSIVCKTEDVASRVESQLKL-----------------VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       259 G~r~G~~~~v~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      |  +|++  +++ +++.+++......                 ..+....+++..+..++..+++...     ....++.
T Consensus       241 G--~G~l--~~~-~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~-----~~g~~~i  310 (424)
T PLN02855        241 G--IGFL--WGK-SDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLS-----EIGMDRI  310 (424)
T ss_pred             c--cEEE--EEc-hhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHH-----HhCHHHH
Confidence            5  7998  455 3333322111000                 0001111234444444444443111     1246677


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccC-------CceeEEec--CCCHHHHHHhHhhc-cEEEcCC------------
Q 015435          322 ADRIISMRQQLFDALSARGTPGDWSHIIK-------QIGMFTFT--GLNSEQVAFMTKEY-HIYMTSD------------  379 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~l~~~-gi~~~~g------------  379 (407)
                      +++.++.++++++.|+++..   +.+..+       .++++.+.  +.+.+.+...|.++ ||.+..|            
T Consensus       311 ~~~~~~l~~~l~~~L~~~~g---~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g  387 (424)
T PLN02855        311 HEYEVELGTYLYEKLSSVPG---VRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLG  387 (424)
T ss_pred             HHHHHHHHHHHHHHHhcCCC---EEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhhhhHHHHHHhC
Confidence            88888999999999987632   444322       23444433  55666666666555 9998753            


Q ss_pred             --C--eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          380 --G--RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       380 --g--Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                        +  |||+.. .+++|++++++.|+++++.
T Consensus       388 ~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~  418 (424)
T PLN02855        388 VNASARASLYFYNTKEEVDAFIHALKDTIAF  418 (424)
T ss_pred             CCCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence              1  999864 3779999999999998865

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.93  E-value=3.7e-23  Score=198.29  Aligned_cols=330  Identities=15%  Similarity=0.094  Sum_probs=210.9

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-c----cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-K----EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      +++.++|+...+   .|....+++++++.+++. ..... .    .+....-..++++++++++ +.       +..++ 
T Consensus        44 ~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~le~~la~~~-g~-------~~~~~-  110 (406)
T PRK13393         44 PREVTVWCSNDY---LGMGQHPAVLAAMHEALD-TCGAGAGGTRNISGTNHYHVLLEAELADLH-GK-------EAALL-  110 (406)
T ss_pred             CccEEEeecccc---cCCCCCHHHHHHHHHHHH-HcCCCCcccccccCChHHHHHHHHHHHHHh-CC-------CcEEE-
Confidence            468999999988   565556678888877775 11111 0    0111223577888888887 42       45666 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-C-CCcEEE
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-P-SGAIVL  182 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-~-~~~~v~  182 (407)
                       +++|++++..++..+....+||.|+.....|......+...|.+++.++.       .|++.+++.+... + .+++++
T Consensus       111 -~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~  182 (406)
T PRK13393        111 -FTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVA  182 (406)
T ss_pred             -eCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEE
Confidence             66777888888654432336777777777777777788888888776654       3667777766532 2 344555


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV  262 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  262 (407)
                      + ++++||+|.+.+   +++|.++|+++|+++|+||+|....++.. .... ........+..++++||||.+|++|   
T Consensus       183 ~-~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~-G~g~-~~~~~~~~~~~i~~~tlsKa~g~~G---  253 (406)
T PRK13393        183 F-ESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPR-GGGI-AEREGLADRLTIIEGTLAKAFGVMG---  253 (406)
T ss_pred             E-cCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCC-CCch-hhhcCCCCCCeEEEEeCchhhcccC---
Confidence            5 899999999776   78888889999999999999873333211 1111 1111111224677899999999877   


Q ss_pred             ceeEEeecChhhHHHHHHHHhhhhhcc--cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          263 GALSIVCKTEDVASRVESQLKLVIRPM--YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       263 G~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      ||+  ++ ++++    .+.+......+  +.+.++..+.++.+.++...      +. ...+++++++++++.+.|++.+
T Consensus       254 G~~--~~-~~~~----~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~------~~-~~~~~~~~~~~~~l~~~L~~~g  319 (406)
T PRK13393        254 GYI--TG-SAAL----CDFIRSFASGFIFTTSLPPAVAAGALASVRHLK------AS-SAERERHQDRVARLRARLDKAG  319 (406)
T ss_pred             cee--eC-CHHH----HHHHHHhCcCceecCccCHHHHHHHHHHHHHHh------hC-HHHHHHHHHHHHHHHHHHHHcC
Confidence            888  34 4443    34343333321  23455556666666665321      11 2234667888999999998876


Q ss_pred             CCCCcccccCCceeEEec-CC--CHHH-HHHhHhhccEEEcC--------C-C--eEEecC-CCCCChhHHHHHHHHHHH
Q 015435          341 TPGDWSHIIKQIGMFTFT-GL--NSEQ-VAFMTKEYHIYMTS--------D-G--RISMAG-LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~-~~--~~~~-~~~~l~~~gi~~~~--------g-g--Ris~~~-~~~e~i~~~~~~l~~~l~  404 (407)
                          +....+.+.++.+. +-  .... ...+++++||.+.+        | +  ||++.. .+++|+++++++|+++++
T Consensus       320 ----~~~~~~~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~  395 (406)
T PRK13393        320 ----IPHLPNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWA  395 (406)
T ss_pred             ----CCcCCCCCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence                55555666655433 21  1223 34555557999864        2 2  887763 488999999999999987


Q ss_pred             hhC
Q 015435          405 RMG  407 (407)
Q Consensus       405 ~~~  407 (407)
                      +++
T Consensus       396 ~~~  398 (406)
T PRK13393        396 RLG  398 (406)
T ss_pred             hcC
Confidence            654

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.93  E-value=8.7e-24  Score=191.30  Aligned_cols=349  Identities=13%  Similarity=0.105  Sum_probs=234.8

Q ss_pred             hhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCC
Q 015435           19 LGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKD   98 (407)
Q Consensus        19 ~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~   98 (407)
                      .....++-..+++++|||..|+-..+.| ..++.+++++.+++. .-.+..+........++.+.+++.. +      ..
T Consensus        30 ~G~G~~v~D~~G~~YlDf~~Giav~~lG-H~hP~iv~al~~Q~~-kl~h~sn~~~~~~~~~la~~L~~~s-~------~~  100 (404)
T COG4992          30 RGEGAYVWDQQGREYLDFAAGIAVNNLG-HCHPALVEALKEQAE-KLWHVSNLFYNEPQAELAEKLVELS-P------FA  100 (404)
T ss_pred             eccccEEECCCCCEeeeeccceeeeccC-CCCHHHHHHHHHHHH-HhhhcccccCChHHHHHHHHHHhhC-c------cc
Confidence            3333444467889999999998888888 778899999988876 2222222223333445555555544 2      13


Q ss_pred             CceEEeecCCcccHHHHHHHHHHhhcC---CCeEEecCCCCCChHHHHhhcCceeeEEEeecC--CCC----CcChhhHH
Q 015435           99 NRVTTVQCLSGTGSLRVGAEFLARHYH---QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDP--ATR----GLNFQGLL  169 (407)
Q Consensus        99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~---gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~--~~~----~~d~~~l~  169 (407)
                      +.+++  ++||++|++.++++.+.+..   ..+|+....+|++-....-..+.+..+..-+.|  .++    --|+++++
T Consensus       101 d~vff--~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~  178 (404)
T COG4992         101 DRVFF--CNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALE  178 (404)
T ss_pred             cEEEE--cCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHH
Confidence            89999  99999999999999888764   347888888887655444444333322211110  000    12889999


Q ss_pred             HHHHcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEE
Q 015435          170 EDLRAAPSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVA  248 (407)
Q Consensus       170 ~~i~~~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~  248 (407)
                      ++++  +++.++++ -.-+-..|+. .+++.++++.++|++||+++|.||+..+++..|   +.+....+.-. .+++  
T Consensus       179 ~ai~--~~taAviv-EPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTG---k~fA~e~~gV~-PDI~--  249 (404)
T COG4992         179 AAID--EDTAAVIV-EPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG---KLFAYEHYGVE-PDIL--  249 (404)
T ss_pred             HHhc--cCeEEEEE-ecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccc---hHHHHHHhCCC-CCEE--
Confidence            9999  57888777 4445566776 677899999999999999999999999999876   45655544222 2233  


Q ss_pred             EecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435          249 QSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       249 ~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  328 (407)
                       ++.|.+| .|+++|..  ++.     +.+...+.......+++.+++++.++.+.++-..        -+...++.++.
T Consensus       250 -tlaK~Lg-GG~PigA~--la~-----~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~--------~e~ll~~v~~~  312 (404)
T COG4992         250 -TLAKALG-GGFPIGAM--LAT-----EEIASAFTPGDHGSTFGGNPLACAVALAVLEVLL--------EEGLLENVREK  312 (404)
T ss_pred             -Eeecccc-CCccceee--EEc-----hhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHc--------chhHHHHHHHH
Confidence             3789999 78999999  566     3334445555555677899999999888876331        23455667778


Q ss_pred             HHHHHHHHHhcCCCCC-cccccCCceeEEecCC--C--HHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHH
Q 015435          329 RQQLFDALSARGTPGD-WSHIIKQIGMFTFTGL--N--SEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDA  398 (407)
Q Consensus       329 ~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~--~--~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~  398 (407)
                      .+++.+.|+++..... +.-+...| ++.=+.+  +  ...+.+.+.++|+.+.+.|    |+...- +++++++.++++
T Consensus       313 g~~~~~~L~~l~~~~~~v~~vRG~G-LmiGiel~~~~~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~~  391 (404)
T COG4992         313 GEYLLQRLRELKRRYPLVKEVRGRG-LMIGIELKEPYRARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDA  391 (404)
T ss_pred             HHHHHHHHHHHhhcCCceeeeecce-eEEEEEecCcccHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHHH
Confidence            8888888887643211 23233333 3322222  2  3444455566899998876    876543 688999999999


Q ss_pred             HHHHHHh
Q 015435          399 IHAAVTR  405 (407)
Q Consensus       399 l~~~l~~  405 (407)
                      ++.++++
T Consensus       392 l~~~l~~  398 (404)
T COG4992         392 LERALAA  398 (404)
T ss_pred             HHHHHHH
Confidence            9999875

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.93  E-value=9.3e-24  Score=201.13  Aligned_cols=296  Identities=14%  Similarity=0.091  Sum_probs=197.9

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh---hcC-CCeEEecCCCCCChHHH---HhhcC
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR---HYH-QLTIYIPQPTWGNHPKV---FTLAG  147 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~---~~~-gd~Vi~~~p~y~~~~~~---~~~~G  147 (407)
                      .+.+.++++++++......  .++++|++  |+|+|+++.+++..+..   ..+ +++|+++.+.|+.+...   ++..|
T Consensus        39 ~~~~~l~~a~~~~~~~~~~--~~~~~i~~--t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G  114 (382)
T TIGR03403        39 ATHPAIAEALDKLYKGINA--RDLDDIII--TSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLG  114 (382)
T ss_pred             HHHHHHHHHHHHHHHHcCc--CCCCeEEE--eCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCC
Confidence            4567788888877733221  14589999  99999999988543211   144 46899998777666554   45689


Q ss_pred             ceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCC
Q 015435          148 LSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGS  227 (407)
Q Consensus       148 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~  227 (407)
                      .+++.+|.+  .++.+|++++++.+.  ++++++++ ++|+||||++++   +++|.++|+++|+++++|+++..... .
T Consensus       115 ~~v~~v~~~--~~g~~d~~~l~~~i~--~~t~lv~~-~~~~n~tG~~~~---~~~I~~la~~~g~~~ivD~a~~~g~~-~  185 (382)
T TIGR03403       115 VEVTYLPIN--EQGTITAEQVREAIT--EKTALVSV-MWANNETGMIFP---IKEIGEICKERGVLFHTDAVQAIGKI-P  185 (382)
T ss_pred             CEEEEEecC--CCCCCCHHHHHHhcc--cCCeEEEE-EcccCCCccccC---HHHHHHHHHHcCCEEEEechhhcCCC-c
Confidence            999999983  346789999999987  56677666 899999999887   56788889999999999999652221 1


Q ss_pred             CCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChh-hHHHHHHHHhhhhhcccCCCChhHHHHHHHHhc
Q 015435          228 LDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTED-VASRVESQLKLVIRPMYSSPPIHGASIVATILK  306 (407)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  306 (407)
                      .     .+   .. ....+++.|++|.+|.+|  +|++  +.++.. +...+.. ..........+++..++.++..+++
T Consensus       186 ~-----~~---~~-~~~D~~~~s~~K~~gp~G--~g~l--~vr~~~~~~p~~~g-~~~~~~~~~gt~~~~~~~al~~al~  251 (382)
T TIGR03403       186 V-----DV---QK-AGVDFLSFSAHKFHGPKG--VGGL--YIRKGVELTPLFHG-GEHMGGRRSGTLNVPYIVAMGEAMR  251 (382)
T ss_pred             c-----Cc---cc-cCCCEEEEcchhhCCCCc--eEEE--EECCCCCCCCcccC-CCCCCCcccCCcChHHHHHHHHHHH
Confidence            1     11   11 123488899999888777  4777  344221 1010100 0000111123566777766666664


Q ss_pred             ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC------ceeEEecCCCHHHHHHhHhhccEEEcCC-
Q 015435          307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ------IGMFTFTGLNSEQVAFMTKEYHIYMTSD-  379 (407)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~gi~~~~g-  379 (407)
                      ..      .+..+..++++++.++++.+.|.+++.   +.+..+.      ...|.+.+.+.+.+...|.++||.++.| 
T Consensus       252 ~~------~~~~~~~~~~~~~l~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~  322 (382)
T TIGR03403       252 LA------NEYLDFEKSHVRRLRDRLEDALLELPD---VFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGS  322 (382)
T ss_pred             HH------HHhHHHHHHHHHHHHHHHHHHHhcCCC---EEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchh
Confidence            22      134667778899999999999987642   4544332      2233444567776666677889999842 


Q ss_pred             ------------------------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          380 ------------------------G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 ------------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                                              +  |+|++. .+++|+++++++|+++++++
T Consensus       323 ~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~  376 (382)
T TIGR03403       323 ACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRL  376 (382)
T ss_pred             ccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                    2  999876 57799999999999988654

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.93  E-value=6.7e-24  Score=203.61  Aligned_cols=330  Identities=18%  Similarity=0.202  Sum_probs=207.7

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhcc----ccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND----QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ++.++|..|.     . +.++.+.++....+...    ......|....+.+.+++..++.+....+.  +..+|++  +
T Consensus        19 ~~~~~~~~~~-----~-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~v~~--~   88 (402)
T cd00378          19 RETLELIASE-----N-FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGA--EYANVQP--H   88 (402)
T ss_pred             HhCeeeeccC-----C-cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCC--Cceeeec--C
Confidence            5688887664     2 44555555554433201    011233545556666666443333111111  1233444  4


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH-----HhhcCceeeEEEeecC-CCCCcChhhHHHHHHcCCCCcE
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV-----FTLAGLSVKTYRYYDP-ATRGLNFQGLLEDLRAAPSGAI  180 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~-----~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~  180 (407)
                       ||++++.+++  ...+.+||+|++++|+|..+...     ++..|.+++.+++..+ .++.+|++++++.+.. +++++
T Consensus        89 -sgt~a~~~~l--~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~-~~~~~  164 (402)
T cd00378          89 -SGSQANLAVY--FALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE-FKPKL  164 (402)
T ss_pred             -CcHHHHHHHH--HHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh-CCCCE
Confidence             5789998884  44478999999999999876543     5677887777776322 2588999999999863 34566


Q ss_pred             EEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-ccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC
Q 015435          181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG  259 (407)
Q Consensus       181 v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  259 (407)
                      +++ ++++||+     ..++++|+++|++||+++|+|++| .++.+.+..  ...   + . .. .++++|+||.+  +|
T Consensus       165 v~~-~~~~~~~-----~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~--~~~---~-~-~~-dv~~~s~sK~l--~G  228 (402)
T cd00378         165 IVA-GASAYPR-----PIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVF--PNP---L-P-GA-DVVTTTTHKTL--RG  228 (402)
T ss_pred             EEe-cCcccCC-----CcCHHHHHHHHHhcCCEEEEEccchhhhhhcccC--CCc---c-c-CC-cEEEeccccCC--CC
Confidence            665 7778765     236889999999999999999995 544443210  011   1 1 12 36899999976  78


Q ss_pred             CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCC-hhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015435          260 ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPP-IHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA  338 (407)
Q Consensus       260 ~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  338 (407)
                      +|.||+  +++++++.+++..    .......+.+ ...+.++..++....     ....++.+++++++++++.+.|++
T Consensus       229 ~~gg~i--~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~  297 (402)
T cd00378         229 PRGGLI--LTRKGELAKKINS----AVFPGLQGGPHLHVIAAKAVALKEAL-----EPEFKAYAKQVVENAKALAEALKE  297 (402)
T ss_pred             CCceEE--EeccHHHHHHHHH----HhCccccCCchHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999  5775565555443    2222222222 222222222222110     113556778899999999999998


Q ss_pred             cCCCCCcccc-cCCceeEEecCC-----CHHHHHHhHhhccEEEcCC-------------C-eEEecC-----CCCCChh
Q 015435          339 RGTPGDWSHI-IKQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSD-------------G-RISMAG-----LSSKTVP  393 (407)
Q Consensus       339 ~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~g-------------g-Ris~~~-----~~~e~i~  393 (407)
                      .|    +.+. .+.++++.|+.+     +.+.+.++|+++||.+.+.             + ||++..     ++++|++
T Consensus       298 ~g----~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~  373 (402)
T cd00378         298 RG----FKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEME  373 (402)
T ss_pred             CC----CeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHH
Confidence            87    5544 456788888855     3456677788899999631             1 887643     3579999


Q ss_pred             HHHHHHHHHHHh
Q 015435          394 HLTDAIHAAVTR  405 (407)
Q Consensus       394 ~~~~~l~~~l~~  405 (407)
                      ++++.|++++++
T Consensus       374 ~~~~~l~~~~~~  385 (402)
T cd00378         374 EIADFIARALKD  385 (402)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.93  E-value=3e-23  Score=195.90  Aligned_cols=289  Identities=15%  Similarity=0.112  Sum_probs=190.4

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEEE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTYR  154 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~  154 (407)
                      .+++++.+++++ +..    .++.+++  |+|+|+++.+++  ...+.+||+|+++.++|.+  +...++..|.+++.+|
T Consensus        34 ~~~~~~~la~~~-g~~----~~~~~~~--~~~~t~al~~~~--~~~~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~  104 (356)
T cd06451          34 MDEILEGLRYVF-QTE----NGLTFLL--SGSGTGAMEAAL--SNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVE  104 (356)
T ss_pred             HHHHHHHHHHHh-cCC----CCCEEEE--ecCcHHHHHHHH--HHhCCCCCEEEEecCCchhHHHHHHHHHhCCCeEEee
Confidence            567788888887 431    1245778  999999998884  4446799999999987765  4567788999999999


Q ss_pred             eecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435          155 YYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS  234 (407)
Q Consensus       155 ~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~  234 (407)
                      .+ + ++.+|++++++.+.. .+++++++ ++++||||.+.+   +++|+++|+++|+++++|+++. ++...     .+
T Consensus       105 ~~-~-~~~~~~~~l~~~i~~-~~~~~v~i-~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D~~~~-~g~~~-----~~  171 (356)
T cd06451         105 KP-W-GEAVSPEEIAEALEQ-HDIKAVTL-THNETSTGVLNP---LEGIGALAKKHDALLIVDAVSS-LGGEP-----FR  171 (356)
T ss_pred             cC-C-CCCCCHHHHHHHHhc-cCCCEEEE-eccCCCcccccC---HHHHHHHHHhcCCEEEEeeehh-ccCcc-----cc
Confidence            83 3 467899999999972 15667777 789999999876   6677888999999999999864 22110     11


Q ss_pred             HHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHH---HHhh---------hh--h-cccCCCChhHHH
Q 015435          235 VRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVES---QLKL---------VI--R-PMYSSPPIHGAS  299 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~---~~~~---------~~--~-~~~~~~~~~~~~  299 (407)
                      +   ... +..+++.|.+|.++.| .++||+  +.+ +++.+.+..   ....         ..  . ....+++...+.
T Consensus       172 ~---~~~-~~d~~~~s~~K~l~~p-~g~G~l--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~  243 (356)
T cd06451         172 M---DEW-GVDVAYTGSQKALGAP-PGLGPI--AFS-ERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLY  243 (356)
T ss_pred             c---ccc-CccEEEecCchhccCC-CCccee--EEC-HHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHH
Confidence            1   111 2235677889999854 468998  454 444443321   0000         00  0 111233444344


Q ss_pred             HHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC---CceeEEec----CCCHHHHHHhHhhc
Q 015435          300 IVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK---QIGMFTFT----GLNSEQVAFMTKEY  372 (407)
Q Consensus       300 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~l~~~  372 (407)
                      ++..+++...     ....++..++.+++++++.+.|++.+    +....+   .++.+.|+    +.+.+.+.+.|.++
T Consensus       244 a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  314 (356)
T cd06451         244 ALREALDLIL-----EEGLENRWARHRRLAKALREGLEALG----LKLLAKPELRSPTVTAVLVPEGVDGDEVVRRLMKR  314 (356)
T ss_pred             HHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHcC----CeeccCcccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            4444443211     12356677888899999999998877    443321   23344444    23455555555555


Q ss_pred             -cEEEcCC------C--eEEecC-CCCCChhHHHHHHHHHHH
Q 015435          373 -HIYMTSD------G--RISMAG-LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       373 -gi~~~~g------g--Ris~~~-~~~e~i~~~~~~l~~~l~  404 (407)
                       ||.+.+|      +  |++++. .+++++++++++|+++++
T Consensus       315 ~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         315 YNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             CCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence             9999865      2  888864 478999999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.93  E-value=2.6e-23  Score=197.38  Aligned_cols=333  Identities=14%  Similarity=0.137  Sum_probs=216.7

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++.+||+..|....+.| + .+++++++.+++.  ..  ..+ +..-..++++.+++.+.+..     ...+++  +
T Consensus        25 d~dg~~~lD~~s~~~~~~lG-~-~p~v~~a~~~~~~--~~--~~~-~~~~~~~~~~~la~~l~~~~-----~~~~~~--~   90 (375)
T PRK04260         25 DTDGKKYLDFSSGIGVTNLG-F-HPQVQQALQKQAG--LI--WHS-PNLYLNSLQEEVAQKLIGDK-----DYLAFF--C   90 (375)
T ss_pred             eCCCCEEEECCCCcccccCC-C-CHHHHHHHHHHHH--hc--Ccc-cCccCCHHHHHHHHHHhcCc-----CCEEEE--c
Confidence            34568899998885433455 4 5567777777765  21  112 22234578888998773321     123578  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH-HHHhhcCce---------eeEEEeecCCCCCcChhhHHHHHHcCC
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP-KVFTLAGLS---------VKTYRYYDPATRGLNFQGLLEDLRAAP  176 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~-~~~~~~G~~---------~~~v~~~~~~~~~~d~~~l~~~i~~~~  176 (407)
                      +||+++++.++++......+++|++.+.+|++.. ..+...|.+         +..++.. +   ..|++.+++.+.  +
T Consensus        91 ~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~dl~~l~~~l~--~  164 (375)
T PRK04260         91 NSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA-I---FNDLNSVKALVN--K  164 (375)
T ss_pred             CccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe-C---CCCHHHHHHhcC--C
Confidence            9999999999877765566788999998887643 333222221         1112110 1   137888888775  3


Q ss_pred             CCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          177 SGAIVLLHACAHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      +..++++ .+++|++|+.. +.+.++++.++|+++|+++|+||+|.++...+   ..+..... ....+   +.||||.+
T Consensus       165 ~~a~vi~-e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g---~~~~~~~~-~~~pd---i~t~sK~l  236 (375)
T PRK04260        165 NTAAVML-ELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTG---KLYAFEHY-GIEPD---IFTLAKGL  236 (375)
T ss_pred             CeEEEEE-CCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---chhhhHhh-CCCCC---EEEecccc
Confidence            4455555 88999999974 56789999999999999999999998876643   22222222 11222   34899999


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDA  335 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (407)
                      + +|+|+||+  +++     +.+.+.+.......+.+.+++.+.++.++++...    ..+..++.++..+..++.+.+.
T Consensus       237 ~-~G~~ig~~--~~~-----~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~----~~~~~~~~~~~~~~~~~~l~~~  304 (375)
T PRK04260        237 A-NGVPVGAM--LAK-----SSLGGAFGYGSHGSTFGGNKLSMAAASATLDIML----TAGFLEQALENGNYLQEQLQKA  304 (375)
T ss_pred             c-CCcceEEE--EEc-----HHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHH
Confidence            8 79999999  566     3344444433333455678888888888886442    1133455666666666666666


Q ss_pred             HHhcCCCCCcccccCCceeEEecCC--CHHHHHHhHhhccEEEcCCC----eEEe-cCCCCCChhHHHHHHHHHH
Q 015435          336 LSARGTPGDWSHIIKQIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG----RISM-AGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       336 l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg----Ris~-~~~~~e~i~~~~~~l~~~l  403 (407)
                      +.+.+.   +..+. ..|++.|+.+  +.+.+.+.+.++||.+.+.+    |+++ ..++++++++++++|++++
T Consensus       305 ~~~~~~---~~~~~-~~g~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~~  375 (375)
T PRK04260        305 LQDKET---VTTVR-GLGYMIGIETTADLSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEVF  375 (375)
T ss_pred             HhhCCC---eeEEe-ccceEEEEEecCcHHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence            654431   22222 2677888865  34555566666899998875    8887 4468899999999998753

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.93  E-value=1.4e-23  Score=200.22  Aligned_cols=334  Identities=13%  Similarity=0.126  Sum_probs=212.6

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccc-cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR-VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++|||..|...++.| ..++++++++.+++. .... ...| +.....++.++++++. +.       +.+++  
T Consensus        31 d~dG~~ylD~~~g~~~~~lG-h~~p~v~~a~~~~~~-~~~~~~~~~-~~~~~~~la~~L~~~~-~~-------~~~~f--   97 (397)
T TIGR03246        31 DQQGKEYIDFAGGIAVNALG-HAHPELVKALIEQAD-KLWHIGNGY-TNEPVLRLAKKLVDAT-FA-------DKVFF--   97 (397)
T ss_pred             eCCCCEEEECCcCHhhccCC-CCCHHHHHHHHHHHH-hcccccCcc-CCHHHHHHHHHHHhhC-CC-------CEEEE--
Confidence            34678999999986555677 567788888878775 1111 1112 2223455666666654 21       68999  


Q ss_pred             cCCcccHHHHHHHHHHhhc------CCCeEEecCCCCCChHHHH-hhcCc------------eeeEEEeecCCCCCcChh
Q 015435          106 CLSGTGSLRVGAEFLARHY------HQLTIYIPQPTWGNHPKVF-TLAGL------------SVKTYRYYDPATRGLNFQ  166 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~------~gd~Vi~~~p~y~~~~~~~-~~~G~------------~~~~v~~~~~~~~~~d~~  166 (407)
                      ++||++|++.++++.+...      ..++|+..+-+|++..... ...|.            .+..+|.       .|++
T Consensus        98 ~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~  170 (397)
T TIGR03246        98 CNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-------NDLA  170 (397)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-------CCHH
Confidence            9999999999988876552      2357888888777764433 22221            1112221       2788


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      ++++.+.  ++.+++++ ...+++.|+. ++.+.+++|.++|++||+++|+||+|.+++..+   ..+....+.- ..+ 
T Consensus       171 ~l~~~l~--~~~aavi~-Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G---~~~a~~~~gv-~pD-  242 (397)
T TIGR03246       171 AAKALIS--DKTCAVIV-EPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG---ELYAYMHYGV-TPD-  242 (397)
T ss_pred             HHHHHhc--cCeEEEEE-ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccc---cchhhhhcCC-CCC-
Confidence            9998886  45566665 4444445554 389999999999999999999999998887654   2222222211 112 


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                        +.++||.++ +|+|+||+  +++     +++.+.+.......+++.+++++.++.+.++...        .+++.+++
T Consensus       243 --i~t~~K~lg-gG~pigav--~~~-----~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~--------~~~l~~~~  304 (397)
T TIGR03246       243 --ILTSAKALG-GGFPIGAM--LTT-----TEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN--------TPELLAGV  304 (397)
T ss_pred             --EEEeehhhh-CCcceeEE--EEc-----HHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHh--------hccHHHHH
Confidence              237899998 79999999  565     4455544433333344667788888877776321        13466778


Q ss_pred             HHHHHHHHHHHHhcCCCCC-cccccCCceeEEec--C-C--CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhH
Q 015435          326 ISMRQQLFDALSARGTPGD-WSHIIKQIGMFTFT--G-L--NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPH  394 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~--~-~--~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~  394 (407)
                      +++.+++.+.|++++.... +......|.++.+.  . .  ....+...|.++|+.+.+.|    |++++. ++++++++
T Consensus       305 ~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~  384 (397)
T TIGR03246       305 KQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDE  384 (397)
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHH
Confidence            8888888888887642111 22233344444321  1 1  12234444555899988754    774332 58899999


Q ss_pred             HHHHHHHHHHhh
Q 015435          395 LTDAIHAAVTRM  406 (407)
Q Consensus       395 ~~~~l~~~l~~~  406 (407)
                      ++++|.++++++
T Consensus       385 ~~~~l~~~l~~~  396 (397)
T TIGR03246       385 GLARFERAIEQV  396 (397)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.93  E-value=4.6e-23  Score=195.05  Aligned_cols=317  Identities=15%  Similarity=0.107  Sum_probs=207.1

Q ss_pred             cccchhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH  125 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~  125 (407)
                      |.|..+.+++.+++. .+  ..++.+  ..-++++|+.+++++ +....   .++|++  |+|+|++++.++  ...+.+
T Consensus         9 pgp~~~~~~v~~~~~-~~--~~~~~~~~~~~~~~~r~~la~l~-~~~~~---~~~i~~--t~~~t~al~~~~--~~l~~~   77 (363)
T TIGR02326         9 PGPLTTSRTVKEAML-FD--WCTWDSDYNIVVEQIRQQLLALA-TAEEG---YTSVLL--QGSGTFAVEAVI--GSAVPK   77 (363)
T ss_pred             CCCCCCCHHHHHHhC-CC--CCCCChHHHHHHHHHHHHHHHHh-CCCCC---ceEEEE--cCCCHHHHHHHH--HhcCCC
Confidence            667777777777765 22  222322  123567788888887 43211   146889  999999999994  445678


Q ss_pred             CCeEEecCCCCCCh--HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435          126 QLTIYIPQPTWGNH--PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI  203 (407)
Q Consensus       126 gd~Vi~~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i  203 (407)
                      ||.+++..+.+.+.  ...++..|.+++.++.  +.++.+|++++++.+.+.++.+++.+ ++++||||+..+   +++|
T Consensus        78 ~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~--~~~~~~d~~~l~~~l~~~~~~~~v~~-~~~~~~tG~~~~---i~~I  151 (363)
T TIGR02326        78 DGKLLVVINGAYGARIVQIAEYLGIPHHVVDT--GEVEPPDVVEVEAILAADPAITHIAL-VHCETTTGILNP---IEAV  151 (363)
T ss_pred             CCeEEEEeCChhhHHHHHHHHHcCCceEEEeC--CCCCCCCHHHHHHHHhhCCCccEEEE-EeecCCccccCc---HHHH
Confidence            88887776655544  4667889999999998  44567999999999885444455555 778999999876   6889


Q ss_pred             HHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc-cccCCCcceeEEeecChhhHHHHHHHH
Q 015435          204 RQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASRVESQL  282 (407)
Q Consensus       204 ~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~~~~~~  282 (407)
                      +++|++||+++|+|++++ ++..+     ..+..    .+..+++.|++|.+ +.+|  +|++  +++ ++..+++....
T Consensus       152 ~~l~~~~g~~livD~~~~-~g~~~-----~~~~~----~~~D~~~~s~~K~l~~p~G--~G~l--~~~-~~~~~~~~~~~  216 (363)
T TIGR02326       152 AKLAHRHGKVTIVDAMSS-FGGIP-----IDIAE----LHIDYLISSANKCIQGVPG--FGFV--IAR-QAELAACKGNA  216 (363)
T ss_pred             HHHHHHcCCEEEEEcccc-ccCcc-----cchhh----cCccEEEecCccccccCCc--ceEE--EEC-HHHHHHhhcCC
Confidence            999999999999998654 33221     12211    23347789999987 4455  6898  465 33333221100


Q ss_pred             h-----------hh---hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 015435          283 K-----------LV---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI  348 (407)
Q Consensus       283 ~-----------~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  348 (407)
                      .           ..   .....++++...+.++.++++...  +.  ...++.+++++++++++.+.|++.|    +...
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~--~~--g~~~~~~~~~~~~~~~l~~~L~~~g----~~~~  288 (363)
T TIGR02326       217 RSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELE--KE--GGVAARHQRYQQNQKTLVAGMRALG----FEPL  288 (363)
T ss_pred             CceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHH--Hh--hCHHHHHHHHHHHHHHHHHHHHHcC----Ceec
Confidence            0           00   001122456666666655554221  00  1256677899999999999998887    3333


Q ss_pred             cC---CceeEE---ecC---CCHHHHHHhHhhccEEEcCCC-------eEEe-cCCCCCChhHHHHHHHHHHH
Q 015435          349 IK---QIGMFT---FTG---LNSEQVAFMTKEYHIYMTSDG-------RISM-AGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       349 ~~---~~~~~~---~~~---~~~~~~~~~l~~~gi~~~~gg-------Ris~-~~~~~e~i~~~~~~l~~~l~  404 (407)
                      .+   ..+...   +..   ++...+.+.|+++||.+.+|.       ||++ +..+.+++++++++|++++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       289 LDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             cCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            22   233322   222   344556666677899998873       9985 55688999999999999875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.92  E-value=3e-23  Score=198.92  Aligned_cols=342  Identities=12%  Similarity=0.048  Sum_probs=204.6

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+++++||..|....+.| ..++++++++.+++. ................+++.++++. +.       +.+++  ++
T Consensus        28 ~dg~~~lD~~~~~~~~~~G-h~~p~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~-------~~~~~--~~   95 (400)
T PTZ00125         28 VEGKKYYDFLSAYSAVNQG-HCHPKILAALINQAQ-KLTLTSRAFYNDVLGLAEKYITDLF-GY-------DKVLP--MN   95 (400)
T ss_pred             CCCCEEEEcccCHhhccCC-cCCHHHHHHHHHHHH-hcccccccccCHHHHHHHHHHHhCC-CC-------CEEEE--eC
Confidence            4568999999886544455 557777877777764 1111111111223344455554433 21       67888  99


Q ss_pred             CcccHHHHHHHHHHhh--------cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCC------CCcChhhHHHHHH
Q 015435          108 SGTGSLRVGAEFLARH--------YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPAT------RGLNFQGLLEDLR  173 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~--------~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~------~~~d~~~l~~~i~  173 (407)
                      ||++|++.++++....        ..+++|+..+-+|.+........+......+...+..      ...|++++++.+.
T Consensus        96 SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~  175 (400)
T PTZ00125         96 SGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQ  175 (400)
T ss_pred             CcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhC
Confidence            9999999997766432        1346788888888776544332211110000000000      1138899999885


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecC
Q 015435          174 AAPSGAIVLLHACAHNPTGVDPT-LEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA  252 (407)
Q Consensus       174 ~~~~~~~v~i~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  252 (407)
                       .++.+++++ .+++||||.+++ .+.+++|.++|++||+++|+||+|.++++.+   ........ ....+++   ++|
T Consensus       176 -~~~~~~v~~-ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G---~~~~~~~~-~~~pd~~---~~s  246 (400)
T PTZ00125        176 -DPNVAAFIV-EPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG---KLLAHDHE-GVKPDIV---LLG  246 (400)
T ss_pred             -CCCeEEEEE-cCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---hhhHHHhc-CCCCCEE---EEc
Confidence             234566666 678999999886 5569999999999999999999998887654   12222111 1112222   478


Q ss_pred             ccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 015435          253 KNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQL  332 (407)
Q Consensus       253 K~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (407)
                      |.++.+++|+||+  +++     +++.+.+.......+.+.+++.+.++.+.++...      +  +...++.+++.+++
T Consensus       247 K~l~~g~~~ig~v--~~~-----~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~------~--~~~~~~~~~~~~~l  311 (400)
T PTZ00125        247 KALSGGLYPISAV--LAN-----DDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLK------E--EKLAENAQRLGEVF  311 (400)
T ss_pred             ccccCCCcCcEEE--EEc-----HHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH------h--cCHHHHHHHHHHHH
Confidence            9998544699999  565     4444444433333344667777887776664321      1  12334555566666


Q ss_pred             HHHHHhc-CCCCCcccccCCceeEEecCC------CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHH
Q 015435          333 FDALSAR-GTPGDWSHIIKQIGMFTFTGL------NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIH  400 (407)
Q Consensus       333 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~  400 (407)
                      .+.|+++ +.........+.| .+.++.+      +...+...|.++||.+.|++    ||+... .+++++++++++|.
T Consensus       312 ~~~l~~l~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~~l~  390 (400)
T PTZ00125        312 RDGLKELLKKSPWVKEIRGKG-LLNAIVFDHSDGVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIK  390 (400)
T ss_pred             HHHHHHHHhcCCCeEEEeccc-EEEEEEEccCcchHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHHHHHHHHH
Confidence            6666554 2111122234434 4444423      22233344446899999865    888542 58899999999999


Q ss_pred             HHHHhh
Q 015435          401 AAVTRM  406 (407)
Q Consensus       401 ~~l~~~  406 (407)
                      ++++++
T Consensus       391 ~~l~~~  396 (400)
T PTZ00125        391 KVLKSF  396 (400)
T ss_pred             HHHHHH
Confidence            998765

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.92  E-value=5.1e-23  Score=197.25  Aligned_cols=328  Identities=19%  Similarity=0.142  Sum_probs=203.8

Q ss_pred             eeeeeeeeeecCCCccccchhHHHHHHHHhcccc-ccccCCCCCC----cHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           33 KLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS-RVKEYLPIVG----LVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        33 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~g----~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      .+.|..+.+    + +.|..+.+++.+.+..... ....|....+    .+++|+.+++++ +..     +++|++  ++
T Consensus        18 ~~yl~~~~~----~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~-~~~-----~~~v~~--~~   84 (397)
T TIGR01976        18 RVFFDNPAG----T-QIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLL-NAD-----PPEVVF--GA   84 (397)
T ss_pred             eEEecCCcc----C-CCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHc-CCC-----CCeEEE--eC
Confidence            455554432    2 4466666666666641111 1123433323    568888899887 431     357988  99


Q ss_pred             CcccHHHHHHHHHH-hhcCCCeEEecCCCCCChH----HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEE
Q 015435          108 SGTGSLRVGAEFLA-RHYHQLTIYIPQPTWGNHP----KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL  182 (407)
Q Consensus       108 g~t~a~~~~~~~~~-~~~~gd~Vi~~~p~y~~~~----~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~  182 (407)
                      |+++++..+...+. .+.+||+|+++++.|.+..    ..++..|++++.++.+ ++++.+|++++++.+.  +++++++
T Consensus        85 ~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~i~--~~~~lv~  161 (397)
T TIGR01976        85 NATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVD-EATGELHPDDLASLLS--PRTRLVA  161 (397)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecc-ccCCCcCHHHHHHhcC--CCceEEE
Confidence            99999887643332 3578999999999887654    3456789999999984 3346789999999987  5667777


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV  262 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  262 (407)
                      + ++|+||||.+.+   +++|+++|++||+++++|+++... ..     ...+   .. .+..+++.|++|.+|   .|+
T Consensus       162 i-~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~-~~-----~~~~---~~-~~~d~~~~s~~K~~g---~~~  224 (397)
T TIGR01976       162 V-TAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYAP-HG-----LIDV---QA-TGADFLTCSAYKFFG---PHM  224 (397)
T ss_pred             E-eCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhcc-cc-----CCCH---HH-cCCCEEEEechhhcC---Cce
Confidence            6 899999999764   888888899999999999987421 11     0111   12 233466689999874   568


Q ss_pred             ceeEEeecChhhHHHHHHHHhhh------hhcccCCCChhHHH---HHHHHhcChh------hHHhHHHHHHHHHHHHHH
Q 015435          263 GALSIVCKTEDVASRVESQLKLV------IRPMYSSPPIHGAS---IVATILKDST------MYKEWTLELKAMADRIIS  327 (407)
Q Consensus       263 G~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~l~~~~------~~~~~~~~~~~~~~~~~~  327 (407)
                      |++  +++ ++..+.+.......      .+....+++.....   ++...+....      .+.+.....++.+++..+
T Consensus       225 G~l--~~~-~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  301 (397)
T TIGR01976       225 GIL--WGR-PELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENR  301 (397)
T ss_pred             EEE--EEc-HHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHH
Confidence            998  455 33333222111000      00111123333333   3333332211      111111235677888888


Q ss_pred             HHHHHHHHHHhcCCCCCcccccC-----CceeEEec--CCCHHHHHHhHhhccEEEcCC-----------------C--e
Q 015435          328 MRQQLFDALSARGTPGDWSHIIK-----QIGMFTFT--GLNSEQVAFMTKEYHIYMTSD-----------------G--R  381 (407)
Q Consensus       328 ~~~~l~~~l~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~l~~~gi~~~~g-----------------g--R  381 (407)
                      .++++.+.|++++.   +.+..+     .++++.+.  +.+.+.+.+.|+++||.+..+                 +  |
T Consensus       302 l~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iR  378 (397)
T TIGR01976       302 LAEYLLVGLSDLPG---VTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVR  378 (397)
T ss_pred             HHHHHHHHHhcCCC---EEEeCCCCccCCCceEEEEeCCcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEE
Confidence            99999999988753   444332     45544432  345566666677789998753                 2  8


Q ss_pred             EEecC-CCCCChhHHHHHH
Q 015435          382 ISMAG-LSSKTVPHLTDAI  399 (407)
Q Consensus       382 is~~~-~~~e~i~~~~~~l  399 (407)
                      ||+.. .+++|++++++.|
T Consensus       379 is~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       379 VGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             EEeeccCCHHHHHHHHHhC
Confidence            88854 4778899888764

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.92  E-value=2e-23  Score=200.11  Aligned_cols=322  Identities=15%  Similarity=0.117  Sum_probs=200.0

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCC-----CCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLP-----IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-----~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ..++++++|.+    + ..+++.+.++..+..    ....|.+     ..|..++++++++++....+.  +.+++.+  
T Consensus        20 ~~~~~l~~g~~----~-~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~~~v~~--   86 (398)
T cd00613          20 QSMSFLGSGTY----K-HNPPAVIKRNILENE----FYTAYTPYQPEISQGRLQALFELQTMLCELTGM--DVANASL--   86 (398)
T ss_pred             cCccccccccc----C-CcCcHHHHHHhcccc----CcccCCCCChhhhhhHHHHHHHHHHHHHHHHCC--Cccceec--
Confidence            45699999986    3 334455555444431    1234555     678899999999888544332  2347777  


Q ss_pred             cCCcccHHHHHHHHHHhhcC--CCeEEecCCCCCChHHHHhhcC----ceeeEEEeecCCCCCcChhhHHHHHHcCCCCc
Q 015435          106 CLSGTGSLRVGAEFLARHYH--QLTIYIPQPTWGNHPKVFTLAG----LSVKTYRYYDPATRGLNFQGLLEDLRAAPSGA  179 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~--gd~Vi~~~p~y~~~~~~~~~~G----~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~  179 (407)
                      +++++.+.+.++ ....+.+  ||+|++++|.|+.+...+...|    .+++.++..  ..+.+|++++++.+.  ++++
T Consensus        87 ~~~g~~~~~~~~-~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~--~~t~  161 (398)
T cd00613          87 QDEATAAAEAAG-LAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSD--EGGTVDLEALKEEVS--EEVA  161 (398)
T ss_pred             cCchHHHHHHHH-HHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccC--CCCCcCHHHHHHhcC--CCeE
Confidence            775554444432 2223444  9999999999999999888777    899999883  345789999999887  5677


Q ss_pred             EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc-
Q 015435          180 IVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY-  258 (407)
Q Consensus       180 ~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-  258 (407)
                      ++++ ++|+ |||.+.  +.+++|+++|++||+++|+|+++...... .+         ....+..++++|++|.+ +| 
T Consensus       162 ~viv-~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~~-~~---------~~~~~~d~~~~s~~K~~-~p~  226 (398)
T cd00613         162 ALMV-QYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTGL-KP---------PGEYGADIVVGNLQKTG-VPH  226 (398)
T ss_pred             EEEE-ECCC-CCceec--chHHHHHHHHHhcCCEEEEEeccccccCC-CC---------hHHcCCCEEEeeccccC-CCC
Confidence            7777 6675 899983  45799999999999999999986533321 10         01124578999999998 55 


Q ss_pred             ---CCCcceeEEeecChhhHHHHHHHH-----------------h---------hhhhcccCCCChhHHHHHHHHhcChh
Q 015435          259 ---GERVGALSIVCKTEDVASRVESQL-----------------K---------LVIRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       259 ---G~r~G~~~~v~~~~~~~~~~~~~~-----------------~---------~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                         |+++|++  +.+ +++.+.+....                 .         ... ....+.+.....++...+....
T Consensus       227 g~Ggp~~g~l--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~-~~~~~~~~~~~~~a~~~l~~~~  302 (398)
T cd00613         227 GGGGPGAGFF--AVK-KELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKAT-SNICTGQALLALMAAMYIVYLG  302 (398)
T ss_pred             CCCCCceeEE--EEh-hhhHhhCCCCeeccccccCCCcceEEecccchhhccccccc-ccceecHHHHHHHHHHHHHHhC
Confidence               7899999  454 33333210000                 0         000 0001112222222222222111


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeE--EecCC------CHHHHHHhHhhccEEEcC---
Q 015435          310 MYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMF--TFTGL------NSEQVAFMTKEYHIYMTS---  378 (407)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~l~~~gi~~~~---  378 (407)
                           ....++.+++++++++++.+.|++++.   ..  .+.+..+  +++.+      +.+.+...|.++||.+..   
T Consensus       303 -----~~g~~~~~~~~~~~~~~l~~~L~~~~~---~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~~  372 (398)
T cd00613         303 -----PEGLKEIAERAHLNANYLAKRLKEVGG---VL--PFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMYL  372 (398)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHhcCC---cc--cCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCcccccccc
Confidence                 134667889999999999999998763   22  1212222  12222      233444445567887754   


Q ss_pred             -C-C--eEEecC-CCCCChhHHHHHH
Q 015435          379 -D-G--RISMAG-LSSKTVPHLTDAI  399 (407)
Q Consensus       379 -g-g--Ris~~~-~~~e~i~~~~~~l  399 (407)
                       + +  |+++.. .+++|++++++.|
T Consensus       373 ~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         373 PVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence             2 2  888754 4789999988764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PLN00144 acetylornithine transaminase

Probab=99.92  E-value=3.8e-23  Score=195.55  Aligned_cols=332  Identities=14%  Similarity=0.128  Sum_probs=209.0

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++.+||+..|....+.| ..++++++++.+++. .......+.......++.+.+++.. .       .+.+++  ++
T Consensus        12 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~-~~~~~~~~~~~~~~~~la~~l~~~~-~-------~~~v~f--~~   79 (382)
T PLN00144         12 VEGKEYLDMAAGIAVNALG-HGDPDWVKAVAEQAG-TLAHVSNVYHTIPQVELAKRLVASS-F-------ADRVFF--CN   79 (382)
T ss_pred             CCCCEEEECCcCHHhccCC-CCCHHHHHHHHHHHH-hcCCccccccCHHHHHHHHHHHhcC-C-------CCeEEE--eC
Confidence            4578999999886555567 667788888888886 1111111111222334444444432 1       268999  99


Q ss_pred             CcccHHHHHHHHHHhhcC-------------CCeEEecCCCCCChHHHHhhcCce-------------eeEEEeecCCCC
Q 015435          108 SGTGSLRVGAEFLARHYH-------------QLTIYIPQPTWGNHPKVFTLAGLS-------------VKTYRYYDPATR  161 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~-------------gd~Vi~~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~  161 (407)
                      +|++|++.++++.+....             ..+|+....+|++...........             +..+|.      
T Consensus        80 sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~------  153 (382)
T PLN00144         80 SGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY------  153 (382)
T ss_pred             CcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC------
Confidence            999999999888765531             246888888888776544432211             111111      


Q ss_pred             CcChhhHHHHHHcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435          162 GLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA  240 (407)
Q Consensus       162 ~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~  240 (407)
                       .|++.+++.+.. .+..++++.+. +||+|+. .+.+.+++|.++|++||+++|+||+|.+|...+   ..++...+.-
T Consensus       154 -~d~~~l~~~~~~-~~~aavi~eP~-q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g---~~~~~~~~~~  227 (382)
T PLN00144        154 -GNLEAARKLIQK-GKTAAVFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG---YLWAHEAYGV  227 (382)
T ss_pred             -CCHHHHHHhcCC-CCeEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hHhhhhhcCC
Confidence             268888888752 34566666555 8885553 345569999999999999999999999998764   2222212211


Q ss_pred             cCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhc---ChhhHHhHHHH
Q 015435          241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK---DSTMYKEWTLE  317 (407)
Q Consensus       241 ~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~  317 (407)
                      ..|    +.+|||.++ +|+|+||+  +++     +++.+.+.......+++.+++.+.++.+.++   +.+    +.+.
T Consensus       228 ~PD----i~t~sK~l~-~G~pig~v--~~~-----~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~----~~~~  291 (382)
T PLN00144        228 EPD----IMTLAKPLA-GGLPIGAV--LVT-----EKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPG----FLAS  291 (382)
T ss_pred             CCC----EEEeccccc-CCcceEEE--EEc-----HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhch----HHHH
Confidence            122    677999998 89999999  566     4455544433344555778888888885443   332    1122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC--HHHHHHhHhhccEEEcCCC-----eEEecC-CCC
Q 015435          318 LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN--SEQVAFMTKEYHIYMTSDG-----RISMAG-LSS  389 (407)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~~~~gg-----Ris~~~-~~~  389 (407)
                      +.++.+++   ++.+.+.+.+.+.   +..+. ..|++.|+.++  .+.+...+.++||.+.+++     |++++. +++
T Consensus       292 ~~~~g~~l---~~~l~~~~~~~~~---~~~vr-g~G~~~~l~l~~~~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~  364 (382)
T PLN00144        292 VAKKGEYL---RELLRRKLGGNPH---VKEVR-GVGLLVGIQLDVPAGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISE  364 (382)
T ss_pred             HHHHHHHH---HHHHHHHHhhCCC---ceeee-cCceEEEEEecCccHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCH
Confidence            23222222   2333333333321   21122 27788888663  3344455566999998864     888876 688


Q ss_pred             CChhHHHHHHHHHHHhh
Q 015435          390 KTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~~  406 (407)
                      ++++.++++|.++++++
T Consensus       365 ~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        365 AELEQAVEILADCLPAL  381 (382)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999998764

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.92  E-value=6.4e-23  Score=193.69  Aligned_cols=315  Identities=17%  Similarity=0.172  Sum_probs=203.2

Q ss_pred             cccchhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH  125 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~  125 (407)
                      |.|....+++.+++..  . ...+.+  ..-..++|+.+++++ +....   ...|++  ++|||+++..++  ...+.+
T Consensus         5 p~p~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~la~~~-~~~~~---~~~i~~--~~~gt~~l~~~~--~~~~~~   73 (355)
T TIGR03301         5 PGPLSTSATVRDAMLV--D-WCHWDSEFNDVTDQVRDRLLALA-GGDDN---HTCVLL--QGSGTFAVEATI--GSLVPR   73 (355)
T ss_pred             CCCCCCCHHHHHHhhh--h-ccCCCHHHHHHHHHHHHHHHHHh-cCCCC---CcEEEE--eCCcHHHHHHHH--HhccCC
Confidence            5566666666666541  1 111211  134677888888888 43211   135778  999999999994  444667


Q ss_pred             CCeEEecCCC-CCC-hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435          126 QLTIYIPQPT-WGN-HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI  203 (407)
Q Consensus       126 gd~Vi~~~p~-y~~-~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i  203 (407)
                      +|+|++..+. |.. +...++..|.+++.++.  +.++.+|++++++.+.+.++...+++ ++++||||+..+   +++|
T Consensus        74 ~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~--~~~~~~d~~~l~~~l~~~~~~~~v~~-~~~~~~~G~~~~---~~~i  147 (355)
T TIGR03301        74 DGKLLVLINGAYGERLAKICEYLGIPHTDLNF--SEYEPPDLNRIEEALAADPDITHVAT-VHHETTTGILNP---LEAI  147 (355)
T ss_pred             CCeEEEECCCchhhHHHHHHHHcCCceEEEec--CCCCCCCHHHHHHHHHhCCCceEEEE-EecCCcccchhH---HHHH
Confidence            8887766654 443 45677789999999987  34568999999999975444455555 788999999654   7899


Q ss_pred             HHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc-cccCCCcceeEEeecChhhHHHHHHHH
Q 015435          204 RQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASRVESQL  282 (407)
Q Consensus       204 ~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~~~~~~  282 (407)
                      +++|++||+++|+|++++ +...+     ..+    ...+..++++|++|.+ +++|  +||+  +++ +++.+.+....
T Consensus       148 ~~l~~~~~~~livD~~~s-~g~~~-----~~~----~~~~~d~~~~s~~K~l~~~~G--~g~~--~~~-~~~~~~~~~~~  212 (355)
T TIGR03301       148 AKVARSHGAVLIVDAMSS-FGAIP-----IDI----EELDVDALIASANKCLEGVPG--FGFV--IAR-RDLLEASAGNA  212 (355)
T ss_pred             HHHHHHcCCEEEEEeccc-cCCcc-----cch----hhcCccEEEecCCcccccCCc--eeEE--EEC-HHHHHHhhCCC
Confidence            999999999999998654 33211     111    1124557889999986 4455  6888  455 44444332100


Q ss_pred             hh-----------h--hhcccCCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 015435          283 KL-----------V--IRPMYSSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDWSHI  348 (407)
Q Consensus       283 ~~-----------~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  348 (407)
                      ..           .  ......+++...+.++..+++...     .. ..++.+++++++++++.+.|++.|    +...
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~-----~~g~~~~~~~~~~~~~~~~~~~L~~~g----~~~~  283 (355)
T TIGR03301       213 RSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELE-----AEGGVPARIARYRRNRELLVDGLRALG----FQPL  283 (355)
T ss_pred             CCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHH-----HcccHHHHHHHHHHHHHHHHHHHHHcC----Ceee
Confidence            00           0  011223556666666555554221     12 256677888999999999998887    4433


Q ss_pred             cC---CceeEEecCC------CHHHHHHhHhhccEEEcCCC-------eEEec-CCCCCChhHHHHHHHHHH
Q 015435          349 IK---QIGMFTFTGL------NSEQVAFMTKEYHIYMTSDG-------RISMA-GLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       349 ~~---~~~~~~~~~~------~~~~~~~~l~~~gi~~~~gg-------Ris~~-~~~~e~i~~~~~~l~~~l  403 (407)
                      .+   .+++++|+.+      +.+.+.+.|.++||.+.+++       ||++. ..++++++++++.|++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~  355 (355)
T TIGR03301       284 LPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL  355 (355)
T ss_pred             cCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence            22   3444454432      33456666777899998863       89864 457899999999998753

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.92  E-value=3.2e-22  Score=190.08  Aligned_cols=296  Identities=13%  Similarity=0.172  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh--cCCCeEEecCCCCCChHHHHhhcCceeeEEEe
Q 015435           78 VDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH--YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRY  155 (407)
Q Consensus        78 ~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~--~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~  155 (407)
                      .++++.+++++ +.     ++.++++  ++|+++++..++..+...  .++|+|+++++.|..+...++..|.+++.+|.
T Consensus        62 ~~~~~~la~~~-g~-----~~~~~~~--~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~  133 (371)
T PRK13520         62 EEAVEMLGELL-HL-----PDAYGYI--TSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPL  133 (371)
T ss_pred             HHHHHHHHHHh-CC-----CCCCeEE--ecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHHcCceEEEecC
Confidence            56777777776 43     2357888  999999998885444322  25789999999999998888999999999987


Q ss_pred             ecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH
Q 015435          156 YDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV  235 (407)
Q Consensus       156 ~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~  235 (407)
                        ++++.+|++++++.+.  ++++.+++ +.++||||.+.+   +++|.++|+++|+++++|++|..+...-. .....+
T Consensus       134 --~~~~~~d~~~l~~~i~--~~~~~vi~-~~~~~~tG~~~~---l~~I~~l~~~~g~~livD~a~~~~~~~~~-~~~~~~  204 (371)
T PRK13520        134 --DDDYRVDVKAVEDLID--DNTIGIVG-IAGTTELGQVDP---IPELSKIALENGIFLHVDAAFGGFVIPFL-DDPPNF  204 (371)
T ss_pred             --CCCCcCCHHHHHHHHh--hCCEEEEE-EcCCcCCcccCC---HHHHHHHHHHcCCCEEEEecchhHHHHhh-cCCCCc
Confidence              3456789999999997  45666665 567899999765   78888889999999999999876542100 000000


Q ss_pred             HHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh----h-cccCCCChhHHHHHHHHhcChhh
Q 015435          236 RMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI----R-PMYSSPPIHGASIVATILKDSTM  310 (407)
Q Consensus       236 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~l~~~~~  310 (407)
                      . + ....-..+..|.+| |+++|.++|++  +..++++.+.+.. ...+.    + ....+.+...+.++..+++... 
T Consensus       205 ~-~-~~~~vd~~~~s~~K-~~~a~~~~G~~--~~~~~~~~~~l~~-~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~-  277 (371)
T PRK13520        205 D-F-SLPGVDSITIDPHK-MGLAPIPAGGI--LFRDESYLDALAV-DTPYLTSKKQATLTGTRSGAGVAATYAVMKYLG-  277 (371)
T ss_pred             c-c-cCCCCceEEECCcc-ccCccCCceEE--EEcCHHHHHhhcc-cCccccCCCCcceEeeccChHHHHHHHHHhhhc-
Confidence            0 0 01122344456677 56677899988  5665554443321 00010    0 0001122333444444444211 


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-cccCCceeEEecCCCHHHHHHhHhhccEEEcCCC-----eEEe
Q 015435          311 YKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-HIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDG-----RISM  384 (407)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~gg-----Ris~  384 (407)
                          ....++.+++..++++++.+.|++.|    +. +..+..+++.+.--+.+.+...|.++||.+.+++     ||++
T Consensus       278 ----~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~  349 (371)
T PRK13520        278 ----REGYRKVVERCMENTRWLAEELKERG----FEPVIEPVLNIVAFDDPNPDEVREKLRERGWRVSVTRCPEALRIVC  349 (371)
T ss_pred             ----HhHHHHHHHHHHHHHHHHHHHHHhCC----CEEecCCCceEEEEecCCHHHHHHHHHHCCceeccCCCCCEEEEEE
Confidence                13356778888999999999998876    55 4455555544322255566666666799987753     8987


Q ss_pred             cC-CCCCChhHHHHHHHHHHHh
Q 015435          385 AG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       385 ~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                      .. .+++|++++++.|++++++
T Consensus       350 ~~~~t~edi~~~~~~l~~~~~~  371 (371)
T PRK13520        350 MPHVTREHIENFLEDLKEVKKR  371 (371)
T ss_pred             ECCCCHHHHHHHHHHHHHHhhC
Confidence            54 4789999999999998764

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.92  E-value=3.2e-22  Score=188.47  Aligned_cols=274  Identities=15%  Similarity=0.173  Sum_probs=190.6

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~  148 (407)
                      +......|++.++++. +.       +..++  ++||++++.++   +..+.+||+|++++|.|+....    .+...|+
T Consensus        50 ~~pt~~~le~~la~l~-g~-------~~~~~--~~sG~~ai~~~---~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~  116 (366)
T PRK08247         50 GNPTRGVLEQAIADLE-GG-------DQGFA--CSSGMAAIQLV---MSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV  116 (366)
T ss_pred             CCchHHHHHHHHHHHh-CC-------CcEEE--EcCHHHHHHHH---HHHhCCCCEEEEecCCcCcHHHHHHHHhhccCc
Confidence            4456889999999988 43       34567  88999999876   3456799999999999997544    4456899


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++.       .|++++++++.  ++++++++ ++|+||||.   ..++++|+++|+++|+++|+|++|....... 
T Consensus       117 ~v~~vd~-------~d~~~l~~~i~--~~tklv~l-e~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~-  182 (366)
T PRK08247        117 RFVYVNT-------ASLKAIEQAIT--PNTKAIFI-ETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTPVLQR-  182 (366)
T ss_pred             eEEEECC-------CCHHHHHHhcc--cCceEEEE-ECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCccccccC-
Confidence            9988864       38899999887  56777777 899999876   7899999999999999999999985333210 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCcccccc-CCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLY-GERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                           ++     .....++++|+||.++.+ +.+.|++  +++++++.+++.    ..+.......+...+..+...++.
T Consensus       183 -----p~-----~~g~di~i~S~sK~~~g~~d~~~G~i--v~~~~~l~~~~~----~~~~~~g~~~s~~~a~l~~~~l~t  246 (366)
T PRK08247        183 -----PL-----EEGADIVIHSATKYLGGHNDVLAGLV--VAKGQELCERLA----YYQNAAGAVLSPFDSWLLIRGMKT  246 (366)
T ss_pred             -----ch-----hcCCcEEEeecceeccCCCceeeeEE--ecChHHHHHHHH----HHHHhcCCCCChHHHHHHHhccCc
Confidence                 11     123569999999999743 4588888  566555444433    333333334555666666655543


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-c-ccCCceeEEecCC-CHHHHHHhHhh-------------
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-H-IIKQIGMFTFTGL-NSEQVAFMTKE-------------  371 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~~~l~~-------------  371 (407)
                                +....++.+++++.+.+.|++.+.   +. + .++.||+|.|. + ..+...++++.             
T Consensus       247 ----------l~~r~~~~~~~a~~l~~~L~~~p~---v~~v~~P~~gg~~sf~-~~~~~~~~~~~~~l~~~~~~~slg~~  312 (366)
T PRK08247        247 ----------LALRMRQHEENAKAIAAFLNEQPG---VTDVLYPGRGGMLSFR-LQDEEWVNPFLKSLKLITFAESLGGV  312 (366)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHhCCC---eeEEecCCcCcEEEEE-ECCHHHHHHHHHcCCcceEccCCCCC
Confidence                      234445668899999999998742   33 3 34489999984 4 23333333332             


Q ss_pred             ccEEEcCC---------------C------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          372 YHIYMTSD---------------G------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       372 ~gi~~~~g---------------g------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ..+.+.|+               |      |||++-   |+.+.+++-|.++|+.+
T Consensus       313 ~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl---E~~~dl~~dl~~al~~~  365 (366)
T PRK08247        313 ESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI---ENVEDLIADLKQAFKQV  365 (366)
T ss_pred             ceEEECCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhhc
Confidence            22233332               1      788773   88999999999998764

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.92  E-value=4.2e-22  Score=189.51  Aligned_cols=217  Identities=17%  Similarity=0.141  Sum_probs=155.4

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~  148 (407)
                      +..+..+|++++++++ +.       +++++  ++||++|+..+  +...+.+||+|+++.|.|..+...    ++..|+
T Consensus        62 ~~p~~~~Le~~iA~~~-g~-------~~~l~--~~sG~~Ai~~a--l~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~  129 (400)
T PRK06234         62 GNPTSTEVENKLALLE-GG-------EAAVV--AASGMGAISSS--LWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV  129 (400)
T ss_pred             CCccHHHHHHHHHHHh-CC-------CcEEE--EcCHHHHHHHH--HHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe
Confidence            6778999999999998 42       46778  99999999887  455588999999999999876554    367899


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc--CceeeeccccccccCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK--GLLPFFDSAYQGFASG  226 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~li~D~~y~~~~~~  226 (407)
                      +++.++.       .|++++++++.  ++++++++ ++|+||||.+.+   +++|+++|+++  |+++|+|++|......
T Consensus       130 ~v~~vd~-------~d~e~l~~~i~--~~tklI~i-esP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~  196 (400)
T PRK06234        130 EVTFVDT-------SNLEEVRNALK--ANTKVVYL-ETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ  196 (400)
T ss_pred             EEEEECC-------CCHHHHHHHhc--cCCeEEEE-ECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC
Confidence            9988865       27899999887  56778777 899999999775   78888889997  9999999999766543


Q ss_pred             CCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHh
Q 015435          227 SLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL  305 (407)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (407)
                      .      ++    . ....++++|+||.++.+|+++ ||+  +++ +++.+++....  .........+......+...+
T Consensus       197 ~------~l----~-~g~Divv~S~sK~l~g~g~~~gG~v--~~~-~~~~~~l~~~~--~~~~~g~~l~p~~a~l~~~~l  260 (400)
T PRK06234        197 R------PL----Q-LGADVVVHSATKYLNGHGDVIAGFV--VGK-EEFINQVKLFG--IKDMTGSVIGPFEAFLIIRGM  260 (400)
T ss_pred             C------ch----h-hCCcEEEeeccccccCCCCceeEEE--Eec-HHHHHHHHHHH--HHHhcCCCCCHHHHHHHHhcc
Confidence            1      11    1 134689999999999899876 777  454 44444332211  111122344555555554444


Q ss_pred             cChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      +.          +....++..++...+.+.|++.+
T Consensus       261 ~t----------l~~r~~~~~~na~~~a~~L~~~~  285 (400)
T PRK06234        261 KT----------LQIRMEKHCKNAMKVAKFLESHP  285 (400)
T ss_pred             Cc----------HHHHHHHHHHHHHHHHHHHHcCC
Confidence            43          33444556677788888887654

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.91  E-value=1.4e-22  Score=192.39  Aligned_cols=331  Identities=15%  Similarity=0.125  Sum_probs=198.9

Q ss_pred             eeeeeeeeecCCCccccchhHHHHHHHHhccc----cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           34 LNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ----SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        34 i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      +||+...+   .|....+.+.+++.+++.+-.    .....|+...++.++++++++++ +.      ++.+++  ++|.
T Consensus         1 ~~f~s~dy---Lgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~-g~------e~al~~--~sG~   68 (392)
T PLN03227          1 LNFATHDF---LSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFL-GT------ESAILY--SDGA   68 (392)
T ss_pred             CCCcCcCc---cCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHh-CC------CcEEEe--cCcH
Confidence            45666655   454555677777777775200    11223666678999999999999 53      144554  5544


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHc---------CCCCcE
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA---------APSGAI  180 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~---------~~~~~~  180 (407)
                      +... .+  +...+++||.|+++++.|.++...+...+.+++.++..+    .-+++.+.+.+..         .+++++
T Consensus        69 ~a~~-~~--i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d----~~~l~~~~~~i~~~~~a~~~~~~~~t~~  141 (392)
T PLN03227         69 STTS-ST--VAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHND----MKDLRRVLEQVRAQDVALKRKPTDQRRF  141 (392)
T ss_pred             HHHH-HH--HHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCC----HHHHHHHHHHhhhhccccccccCCCcEE
Confidence            4444 44  345588999999999999999888888888887776531    1244454444431         124555


Q ss_pred             EEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH--HcCCcEEEEEecCcccccc
Q 015435          181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV--ADGGECLVAQSYAKNMGLY  258 (407)
Q Consensus       181 v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~  258 (407)
                      +++ .+++||+|.+.+   +++|+++|++||+++|+||+|. +...+.... .....+.  +..+..+++.|+||.++  
T Consensus       142 vi~-E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~-~g~~g~~G~-g~~~~~g~~p~~~~Div~~slsk~~g--  213 (392)
T PLN03227        142 LVV-EGLYKNTGTLAP---LKELVALKEEFHYRLILDESFS-FGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLENAFG--  213 (392)
T ss_pred             EEE-cCCcCCCCcccC---HHHHHHHHHHcCCEEEEECccc-ccccCCCCC-cHHHHcCCCCCCCceEEEeechhhhh--
Confidence            555 889999999887   7788899999999999999997 443221111 1112111  12244788899999876  


Q ss_pred             CCCcceeEEeecChhhHHHHHHHHhhhhhcccCC--CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          259 GERVGALSIVCKTEDVASRVESQLKLVIRPMYSS--PPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL  336 (407)
Q Consensus       259 G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  336 (407)
                       .+.|++   +.++++.+    .+........++  .++..+.++...+....      + .+.++++++++.+++.+.|
T Consensus       214 -~~gg~v---~~~~~~~~----~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~------~-~~~~~~~l~~~~~~l~~~L  278 (392)
T PLN03227        214 -SVGGMT---VGSEEVVD----HQRLSGSGYCFSASAPPFLAKADATATAGEL------A-GPQLLNRLHDSIANLYSTL  278 (392)
T ss_pred             -ccCcEE---ecCHHHHH----HHHHhCcCccccCCCCHHHHHHHHHHHHHHh------c-CHHHHHHHHHHHHHHHHHH
Confidence             344777   34444333    332222222222  23445555554443211      1 2356677888999999999


Q ss_pred             HhcCCCC------CcccccCCceeEEecCCCH-------------HHHHHhHhhccEEEcCC-------------C--eE
Q 015435          337 SARGTPG------DWSHIIKQIGMFTFTGLNS-------------EQVAFMTKEYHIYMTSD-------------G--RI  382 (407)
Q Consensus       337 ~~~~~~~------~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~gi~~~~g-------------g--Ri  382 (407)
                      ++.+.+.      .+.......+.+..+.+..             ..+.+.+.++|+.+.+.             .  |+
T Consensus       279 ~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~  358 (392)
T PLN03227        279 TNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRV  358 (392)
T ss_pred             HhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEE
Confidence            8654221      0000011112222222211             13444555589887531             1  77


Q ss_pred             EecC-CCCCChhHHHHHHHHHHHhh
Q 015435          383 SMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       383 s~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++.. +++||++++++.|+++++++
T Consensus       359 ~~~~~~t~eei~~~~~~l~~~~~~~  383 (392)
T PLN03227        359 VANASHTREDIDKLLTVLGEAVEAI  383 (392)
T ss_pred             EecCCCCHHHHHHHHHHHHHHHHHH
Confidence            7754 68999999999999998753

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.91  E-value=1.9e-22  Score=191.78  Aligned_cols=280  Identities=18%  Similarity=0.171  Sum_probs=187.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhc---CCCeEEecCCCCCChH----HHHhhcCc
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY---HQLTIYIPQPTWGNHP----KVFTLAGL  148 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~---~gd~Vi~~~p~y~~~~----~~~~~~G~  148 (407)
                      ...++|+.+++++ +..    +++++++  |+|+|+++.+++  .....   +||+|++++++|+...    ...+..|.
T Consensus        44 ~~~~~~~~la~~~-~~~----~~~~v~~--~~g~t~a~~~~~--~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~  114 (373)
T cd06453          44 AYEAAREKVARFI-NAP----SPDEIIF--TRNTTEAINLVA--YGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGA  114 (373)
T ss_pred             HHHHHHHHHHHHh-CCC----CCCeEEE--eCCHHHHHHHHH--HHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCc
Confidence            3567888999888 432    1478999  999999999885  33344   8999999999998753    34457899


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++.+  .++.+|++++++.+.  ++++++++ ++++||||.+.+   +++|.++|++||++|++|++|...... .
T Consensus       115 ~~~~v~~~--~~~~~d~~~l~~~l~--~~~~~v~~-~~~~~~tG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~-~  185 (373)
T cd06453         115 KLKVVPVD--DDGQLDLEALEKLLT--ERTKLVAV-THVSNVLGTINP---VKEIGEIAHEAGVPVLVDGAQSAGHMP-V  185 (373)
T ss_pred             EEEEeecC--CCCCcCHHHHHHHhc--CCceEEEE-eCcccccCCcCC---HHHHHHHHHHcCCEEEEEhhhhcCcee-e
Confidence            99999983  456799999999997  46677666 899999999876   567888899999999999997633211 0


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhh---------------------
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIR---------------------  287 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~---------------------  287 (407)
                           .+    ......++++|++|.++.  .++|++  +++ ++    +.+.+.....                     
T Consensus       186 -----~~----~~~~~d~~~~s~~K~~~~--~g~g~~--~~~-~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  247 (373)
T cd06453         186 -----DV----QDLGCDFLAFSGHKMLGP--TGIGVL--YGK-EE----LLEEMPPYGGGGEMIEEVSFEETTYADLPHK  247 (373)
T ss_pred             -----ec----cccCCCEEEeccccccCC--CCcEEE--EEc-hH----HhhcCCCeecCCCccccccccccccCCCccc
Confidence                 11    111234667899999885  567888  465 33    3333322110                     


Q ss_pred             cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc---CCceeEEec--CCCH
Q 015435          288 PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII---KQIGMFTFT--GLNS  362 (407)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~--~~~~  362 (407)
                      ....+++...+.++..+++...     ....+.++++.+++++++.+.+++++.   ++...   ..++++.+.  +.+.
T Consensus       248 ~~~~t~~~~~~~al~~al~~l~-----~~g~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  319 (373)
T cd06453         248 FEAGTPNIAGAIGLGAAIDYLE-----KIGMEAIAAHEHELTAYALERLSEIPG---VRVYGDAEDRAGVVSFNLEGIHP  319 (373)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHH-----HcCHHHHHHHHHHHHHHHHHHHhcCCC---eEEeCCccccCCeEEEEECCcCH
Confidence            0011334334444333333111     012566778888899999999988742   44332   234444432  3455


Q ss_pred             HHHHHhHhhccEEEcCC--------------C--eEEecC-CCCCChhHHHHHH
Q 015435          363 EQVAFMTKEYHIYMTSD--------------G--RISMAG-LSSKTVPHLTDAI  399 (407)
Q Consensus       363 ~~~~~~l~~~gi~~~~g--------------g--Ris~~~-~~~e~i~~~~~~l  399 (407)
                      +.+.+.|.++||.+.+|              +  |+|++. .+++|++++++.|
T Consensus       320 ~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         320 HDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             HHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence            66666667789988643              2  898874 4779999988764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.91  E-value=2.2e-22  Score=191.42  Aligned_cols=342  Identities=12%  Similarity=0.047  Sum_probs=215.6

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++.+||+..|....+.| ..++.+++++.+++. ...............++.+.+++.. .   .   .+.+++  +
T Consensus        36 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~-~~~~~~~~~~~~~~~~la~~L~~~~-~---~---~~~v~f--~  104 (408)
T PRK04612         36 DDQGREYLDLAAGIAVCGLG-HNDPDLVAALTEQAG-KLWHTSNVFYSAPPLKLAEELVTAS-R---F---AEKVFL--C  104 (408)
T ss_pred             ECCCCEEEEcCccHhhccCC-CCCHHHHHHHHHHHH-hccccccccCCHHHHHHHHHHHhhC-C---C---CCEEEE--c
Confidence            45679999999987655667 667788888888875 1111111101111223444444432 1   1   268999  9


Q ss_pred             CCcccHHHHHHHHHHhhc--C----C-CeEEecCCCCCChHHHHhhc-CceeeE---EEeecC--CCCCcChhhHHHHHH
Q 015435          107 LSGTGSLRVGAEFLARHY--H----Q-LTIYIPQPTWGNHPKVFTLA-GLSVKT---YRYYDP--ATRGLNFQGLLEDLR  173 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~--~----g-d~Vi~~~p~y~~~~~~~~~~-G~~~~~---v~~~~~--~~~~~d~~~l~~~i~  173 (407)
                      +||++|++.++++.+...  .    + .+|+....+|++........ |.....   .+....  .-...|++.+++.+.
T Consensus       105 ~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~  184 (408)
T PRK04612        105 NSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMA  184 (408)
T ss_pred             CchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhC
Confidence            999999999998887652  2    2 36888888888775543322 111000   000000  001127788888875


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCC--HHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          174 AAPSGAIVLLHACAHNPTGVDPT--LEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       174 ~~~~~~~v~i~~~p~NPtG~~~~--~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                        +++..+++ ..|.+++|.+++  .+.+++|.++|++||+++|+||+|.++...+   ..+..    ...+....+.+|
T Consensus       185 --~~~~aavi-~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~~a~----~~~~~~pdi~t~  254 (408)
T PRK04612        185 --GGDVAAVM-LEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG---TLFAH----WQEQVTPDIVTL  254 (408)
T ss_pred             --CCCEEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC---chhhh----hhcCCCCCEEEE
Confidence              34445445 567888876655  6789999999999999999999999887754   12221    122445667789


Q ss_pred             CccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 015435          252 AKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQ  331 (407)
Q Consensus       252 sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (407)
                      ||.++ +|+|+||+  +++     +++.+.+.......+++.+++++.++.+.|+...      +  +.+.++++++.++
T Consensus       255 ~K~l~-~G~piga~--~~~-----~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~------~--~~l~~~~~~~g~~  318 (408)
T PRK04612        255 AKALG-GGFPIGAM--LAG-----PKVAETMQFGAHGTTFGGNPLAAAVARVALRKLA------S--PQIAANVARQSAA  318 (408)
T ss_pred             cchhc-CCCceEEE--EEC-----HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHH------h--ccHHHHHHHHHHH
Confidence            99999 89999999  566     3344444433334455778888998888876431      1  3556777778888


Q ss_pred             HHHHHHhcCCCC-CcccccCCceeEEec--CC---CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHH
Q 015435          332 LFDALSARGTPG-DWSHIIKQIGMFTFT--GL---NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIH  400 (407)
Q Consensus       332 l~~~l~~~~~~~-~~~~~~~~~~~~~~~--~~---~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~  400 (407)
                      +.+.|+++.... .+..+...|.++.+.  .-   ....+...+.++|+.+.+.|    |+.... ++++++++++++|+
T Consensus       319 l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~  398 (408)
T PRK04612        319 LRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLR  398 (408)
T ss_pred             HHHHHHHHHhhCCCeeeeeccceEEEEEecCchhhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHH
Confidence            888777653110 122334455444322  11   12334455667999998765    665432 58899999999999


Q ss_pred             HHHHh
Q 015435          401 AAVTR  405 (407)
Q Consensus       401 ~~l~~  405 (407)
                      +++++
T Consensus       399 ~~l~~  403 (408)
T PRK04612        399 LALAD  403 (408)
T ss_pred             HHHHH
Confidence            98865

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.91  E-value=4e-22  Score=190.92  Aligned_cols=340  Identities=13%  Similarity=0.135  Sum_probs=211.8

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCC--CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL--PIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~--~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++++||+..|....+.| ..++.+++++.+++.  ......+.  +..-..++.+.+++.. ...    ..+.+++ 
T Consensus        36 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~--~~~~~~~~~~~~~~~~~la~~l~~~~-p~~----~~~~~~f-  106 (421)
T PRK09792         36 DVEGNEYIDFAAGIAVLNTG-HRHPDLVAAVEQQLQ--QFTHTAYQIVPYESYVTLAEKINALA-PVS----GQAKTAF-  106 (421)
T ss_pred             eCCCCEEEEccCchhhhcCC-CCCHHHHHHHHHHHH--hccCcccCccCCHHHHHHHHHHHHhC-CCC----CCceEEE-
Confidence            45678999999887655667 667788888888876  21111121  1122234555555533 111    1257899 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-Cc-------------eeeEEEeecCCCCCc----Chh
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-GL-------------SVKTYRYYDPATRGL----NFQ  166 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~~~~~~----d~~  166 (407)
                       ++||++|++.++++.+......+|+....+|++........ |.             .+..+|..+.. .++    +++
T Consensus       107 -~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~  184 (421)
T PRK09792        107 -FTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLD  184 (421)
T ss_pred             -eCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHH
Confidence             99999999999988876655567888888888775433221 11             12233331111 122    246


Q ss_pred             hHHHHHHc---CCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          167 GLLEDLRA---APSGAIVLLHACAHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       167 ~l~~~i~~---~~~~~~v~i~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      .+++.+.+   ..+.+++++ ...++|+|..+ +.+.+++|.++|++||+++|+||++.+|.+.+   ..+....+....
T Consensus       185 ~l~~~~~~~~~~~~iaavi~-EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G---~~~a~~~~~~~p  260 (421)
T PRK09792        185 AIERLFKSDIEAKQVAAIIF-EPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTG---KLFAMDHYADKP  260 (421)
T ss_pred             HHHHHHHhccCCCceEEEEE-ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC---chhHHHhcCCCC
Confidence            77777753   233456666 44599999865 99999999999999999999999999998764   234444332222


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      +    +.+|||.++ +|+|+||+  +++     +++.+.+.......+.+.+++++.++.+.++-..      +  ....
T Consensus       261 D----i~t~gK~l~-~G~pigav--~~~-----~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~------~--~~~~  320 (421)
T PRK09792        261 D----LMTMAKSLA-GGMPLSGV--VGN-----ANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIID------K--ESLC  320 (421)
T ss_pred             c----EEEeehhhc-CCCceEEE--EEc-----HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHH------h--hhHH
Confidence            2    567999999 89999998  565     4455444333333455788888886666654221      1  0222


Q ss_pred             HHHHHHHHHHHHHHHhcC--CCCCcccccCCc-eeEEecCCC-----------HHHHHHhHhhccEEEcCCC------eE
Q 015435          323 DRIISMRQQLFDALSARG--TPGDWSHIIKQI-GMFTFTGLN-----------SEQVAFMTKEYHIYMTSDG------RI  382 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~-~~~~~~~~~-----------~~~~~~~l~~~gi~~~~gg------Ri  382 (407)
                      +++++..+++.+.++.+-  .+  . +..+.| |++.|+.+.           ...+...+.++||.+.+.|      |+
T Consensus       321 ~~~~~~g~~l~~~l~~l~~~~p--~-v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl  397 (421)
T PRK09792        321 ERANQLGQRLKNTLIDAKESVP--A-IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRF  397 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC--C-cceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEE
Confidence            333344444444444331  11  1 234445 777777541           1223344455899986532      77


Q ss_pred             EecC-CCCCChhHHHHHHHHHHH
Q 015435          383 SMAG-LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       383 s~~~-~~~e~i~~~~~~l~~~l~  404 (407)
                      .++. ++++++++++++|.++++
T Consensus       398 ~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        398 LYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             eCCCcCCHHHHHHHHHHHHHHHh
Confidence            7654 688999999999999875

>PLN02624 ornithine-delta-aminotransferase

Probab=99.91  E-value=4.4e-22  Score=193.03  Aligned_cols=337  Identities=11%  Similarity=0.065  Sum_probs=211.2

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+.++|||..|....+.| ..++++++++.+++.+ ......+.......++.+.++++. +.       +.+++  ++
T Consensus        72 ~dG~~ylD~~sg~~~~~~G-h~~p~v~~ai~~ql~~-~~~~~~~~~~~~~~~la~~L~~~~-~~-------~~~~f--~~  139 (474)
T PLN02624         72 PEGKKYLDFLSAYSAVNQG-HCHPKIIKALTEQAEK-LTLSSRAFYNDKFPEFAEYLTSMF-GY-------DMVLP--MN  139 (474)
T ss_pred             CCCCEEEEcccchhcccCC-CCCHHHHHHHHHHHHh-cCCcccccCCHHHHHHHHHHHhhc-CC-------CeEEE--eC
Confidence            4578999999886545566 6678888888888862 111111122344566777777765 32       68999  99


Q ss_pred             CcccHHHHHHHHHHhhc-------CCC-eEEecCCCCCChHHHHhhcCce-------------eeEEEeecCCCCCcChh
Q 015435          108 SGTGSLRVGAEFLARHY-------HQL-TIYIPQPTWGNHPKVFTLAGLS-------------VKTYRYYDPATRGLNFQ  166 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~-------~gd-~Vi~~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~d~~  166 (407)
                      +|++|++.++++.....       +++ .|+...-+|.+..........+             +..++.       -|++
T Consensus       140 SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d~~  212 (474)
T PLN02624        140 TGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-------GDLD  212 (474)
T ss_pred             ChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-------CCHH
Confidence            99999999988776642       133 4677777777664333222111             112211       2678


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCCCCHH-HHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPTLE-QWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~-~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      .+++.+...+.....+++.+++|++|.+++++ .+++|.++|++||+++|+||+|.+++..+   ........ ....++
T Consensus       213 ~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG---~~~a~~~~-~i~pDi  288 (474)
T PLN02624        213 ALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTG---KMLACDWE-EVRPDV  288 (474)
T ss_pred             HHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCc---chhhHHhc-CCCCCE
Confidence            88888864433344444488999999988766 59999999999999999999999887654   22222111 111222


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                      +   ++||.++.+++++|++  +.+ ++    +...+.......+++.+++.+.++.+.++...      +  ..+.++.
T Consensus       289 v---~lsK~lggG~~pigav--~~~-~~----i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~------~--~~l~~~~  350 (474)
T PLN02624        289 V---ILGKALGGGVIPVSAV--LAD-KD----VMLCIKPGEHGSTFGGNPLASAVAMAALQVVQ------D--EKLAERS  350 (474)
T ss_pred             E---EecccccCCCCcceee--eec-HH----HHhHhccCCcCCCCCCCHHHHHHHHHHHHHHH------h--chHHHHH
Confidence            3   3689999777999999  455 33    33333323333344678888888887775321      1  1233455


Q ss_pred             HHHHHHHHHHHHhcC--CCCCcccccCCceeEEe-cCCC------HHHHHHhHhhccEEEcCCC----eEEec-CCCCCC
Q 015435          326 ISMRQQLFDALSARG--TPGDWSHIIKQIGMFTF-TGLN------SEQVAFMTKEYHIYMTSDG----RISMA-GLSSKT  391 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~  391 (407)
                      .++.+++.+.|+++.  .+..+....+.|.++.+ ++.+      ...+.+.|.++||.+.|++    ||++. .+++++
T Consensus       351 ~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~~~~lR~~p~l~~t~e~  430 (474)
T PLN02624        351 AKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDE  430 (474)
T ss_pred             HHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecCCCCEEEEECCccCCHHH
Confidence            555666666665542  11112333455555542 2221      1233344566899999875    77653 258899


Q ss_pred             hhHHHHHHHHHHHh
Q 015435          392 VPHLTDAIHAAVTR  405 (407)
Q Consensus       392 i~~~~~~l~~~l~~  405 (407)
                      +++++++|+++++.
T Consensus       431 id~~l~~L~~~l~~  444 (474)
T PLN02624        431 LQECSKALSDVLEH  444 (474)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998853

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.91  E-value=3.9e-23  Score=194.34  Aligned_cols=302  Identities=11%  Similarity=0.015  Sum_probs=202.2

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh--c-
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH--Y-  124 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~--~-  124 (407)
                      +.+...+...+.... +. ....|....+..++++++++++....+.+.++.++++  |+|||+++.+++..+...  . 
T Consensus         9 ~~~~~~~~~~~~~~~-n~-~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~--t~ggt~a~~~al~~~~~~~~~~   84 (345)
T cd06450           9 MDPPALLLEMLTSAK-NA-IDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVF--TSGGSESNLLALLAARDRARKR   84 (345)
T ss_pred             CcHHHHHHHHHHHhc-CC-CCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEE--eCChhHHHHHHHHHHHHHhhhh
Confidence            445555555555554 22 2344877888899999998888443333223468999  999999999886444321  1 


Q ss_pred             -------C--CCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---C-CCcEEEEecCCCCCC
Q 015435          125 -------H--QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA---P-SGAIVLLHACAHNPT  191 (407)
Q Consensus       125 -------~--gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~---~-~~~~v~i~~~p~NPt  191 (407)
                             +  ++.|++++++|..+...+...|.+++.++++ + ++.+|++++++.+.+.   . ++.++++ ++++|||
T Consensus        85 ~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~-~-~~~~d~~~l~~~i~~~~~~~~~~~~v~~-~~~~~~t  161 (345)
T cd06450          85 LKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVD-E-DGRMDPEALEAAIDEDKAEGLNPIMVVA-TAGTTDT  161 (345)
T ss_pred             hhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeC-C-CCCcCHHHHHHHHHHHHHCCCCcEEEEE-ecccCCC
Confidence                   2  3478888999999989989889999999983 3 3589999999999731   1 3445444 8899999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecC
Q 015435          192 GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKT  271 (407)
Q Consensus       192 G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~  271 (407)
                      |.+   +++++|+++|+++|+++++|++|..+....   +..... .....+...+..|++|.++ ++.++|++  +.+ 
T Consensus       162 G~~---~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~---~~~~~~-~~~~~~~d~~~~s~~K~l~-~p~g~g~~--~~~-  230 (345)
T cd06450         162 GAI---DPLEEIADLAEKYDLWLHVDAAYGGFLLPF---PEPRHL-DFGIERVDSISVDPHKYGL-VPLGCSAV--LVR-  230 (345)
T ss_pred             CCC---CCHHHHHHHHHHhCCeEEEechhhHHHhhC---hhhHHH-hcCccccCEEEEchhHhhC-CCcchHHH--HHH-
Confidence            996   468899999999999999999998776421   111110 1111233466789999765 56788887  232 


Q ss_pred             hhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cC
Q 015435          272 EDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI-IK  350 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~  350 (407)
                                             ...+.++...+..        ..+++.+++..++++++.+.|++.+.   +.+. .+
T Consensus       231 -----------------------~~~~~~~l~~l~~--------~g~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~  276 (345)
T cd06450         231 -----------------------ALKLWATLRRFGR--------DGYGEHIDRIVDLAKYLAELIRADPG---FELLGEP  276 (345)
T ss_pred             -----------------------HHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHhcCCC---eEEecCC
Confidence                                   3334444444432        33567778888899999999988753   4433 35


Q ss_pred             CceeEEec--C-----CCHHHHHHhHhhccEEEcCC------C--eEEecC-C-CCCChhHHHHHHHH
Q 015435          351 QIGMFTFT--G-----LNSEQVAFMTKEYHIYMTSD------G--RISMAG-L-SSKTVPHLTDAIHA  401 (407)
Q Consensus       351 ~~~~~~~~--~-----~~~~~~~~~l~~~gi~~~~g------g--Ris~~~-~-~~e~i~~~~~~l~~  401 (407)
                      ..+++.|.  +     .+...+.+.|.++|+.+.++      +  |+++.. . ++++++++++.|++
T Consensus       277 ~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         277 NLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             ceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            56666654  2     22334555556665433321      1  999875 3 67999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.91  E-value=4.6e-22  Score=190.52  Aligned_cols=344  Identities=14%  Similarity=0.116  Sum_probs=219.7

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...+++++|+..|....+.| ..++.+++++.+++.  ......+  .+.....++.+.+++.. ...+    .+.+++ 
T Consensus        36 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~--~~~~~~~~~~~~~~~~~la~~l~~~~-p~~~----~~~~~f-  106 (421)
T PRK06777         36 DVEGREYIDFAAGIAVLNTG-HRHPKVVAAVRQQLD--QFTHTAYQIVPYASYVTLAERINALA-PIDG----PAKTAF-  106 (421)
T ss_pred             eCCCCEEEEcccCHHhhccC-CCCHHHHHHHHHHHh--hcccccccccCChHHHHHHHHHHHhC-CCCC----CceEEE-
Confidence            45678999999886555566 667788888888876  2111112  12223345555565544 2111    268999 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-Cce-------------eeEEEeecCCC---CCcChhh
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-GLS-------------VKTYRYYDPAT---RGLNFQG  167 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G~~-------------~~~v~~~~~~~---~~~d~~~  167 (407)
                       +++|++|++.++++.+......+|+...-+|++........ |..             +..++..+...   ...+++.
T Consensus       107 -~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  185 (421)
T PRK06777        107 -FTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSS  185 (421)
T ss_pred             -eCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHH
Confidence             99999999999988877655567888888888776544321 210             11112211000   0113566


Q ss_pred             HHHHHHc--CC-CCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          168 LLEDLRA--AP-SGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       168 l~~~i~~--~~-~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      +++.+.+  .+ +..++++ ...++..|. +++++.+++|.++|++||+++|+||+|.++.+.+   ..++...+.. ..
T Consensus       186 l~~~~~~~~~~~~iaavi~-Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g---~~~~~~~~~~-~p  260 (421)
T PRK06777        186 VERLFKADIAPDQVAAILL-EPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTG---KLFAMEYYDV-KP  260 (421)
T ss_pred             HHHHHHhccCCCceEEEEE-CCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCC---chhhhhhcCC-CC
Confidence            7777752  22 3345555 445667775 5889999999999999999999999999987764   2333333211 12


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ++   .++||.++ +|+|+||+  +++     +++.+.+.......+++.+++++.++.+.|+...      +  +.+.+
T Consensus       261 Di---v~~sK~l~-~G~pigav--~~~-----~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~------~--~~l~~  321 (421)
T PRK06777        261 DL---ITMAKSLG-GGMPISAV--VGR-----AEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIA------E--EKLCQ  321 (421)
T ss_pred             CE---Eeeehhhc-CCCceEEE--EEc-----HHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHH------h--ccHHH
Confidence            22   26999999 89999999  565     4455444433334556788999999998886331      1  35667


Q ss_pred             HHHHHHHHHHHHHHhcCCC-CCcccccCCceeEEe-cCC------CHHH---HHHhHhhccEEEcCCC------eEEec-
Q 015435          324 RIISMRQQLFDALSARGTP-GDWSHIIKQIGMFTF-TGL------NSEQ---VAFMTKEYHIYMTSDG------RISMA-  385 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~------~~~~---~~~~l~~~gi~~~~gg------Ris~~-  385 (407)
                      +++++.+++.+.|+++... ..+..+.+.|.++.+ +..      +.+.   +...+.++||.+.|++      ||++. 
T Consensus       322 ~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl  401 (421)
T PRK06777        322 RALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPL  401 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCC
Confidence            7777888888888765210 013445677877764 221      1222   2233455899998864      77764 


Q ss_pred             CCCCCChhHHHHHHHHHHH
Q 015435          386 GLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       386 ~~~~e~i~~~~~~l~~~l~  404 (407)
                      .++++++++++++|.+++.
T Consensus       402 ~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        402 TIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             CCCHHHHHHHHHHHHHHHh
Confidence            2588999999999998874

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.91  E-value=2.2e-22  Score=182.57  Aligned_cols=318  Identities=20%  Similarity=0.246  Sum_probs=220.9

Q ss_pred             cccchhHHHHHHHHhc---cccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh
Q 015435           48 PLVLNVVRKAEQLLVN---DQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR  122 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~---~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~  122 (407)
                      |..+.++++++..+..   ++...|.|+.  -..+++.|+.+|+.+ +.     ++++|+|  |+|+|++.+++++-...
T Consensus        12 p~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~ll-ga-----~~~eIiF--TSG~TEsnNlaI~g~~~   83 (386)
T COG1104          12 PVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLL-GA-----DPEEIIF--TSGATESNNLAIKGAAL   83 (386)
T ss_pred             CCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHh-CC-----CCCeEEE--ecCCcHHHHHHHHhhHH
Confidence            3344555555444431   2333444432  223788899999988 43     3589999  99999999998643212


Q ss_pred             hc----CCCeEEecCCCCCChHHHHhhc---CceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCC
Q 015435          123 HY----HQLTIYIPQPTWGNHPKVFTLA---GLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDP  195 (407)
Q Consensus       123 ~~----~gd~Vi~~~p~y~~~~~~~~~~---G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~  195 (407)
                      ..    .|..|+++.-.++...+.++.+   |.+|.++|.  +.++.+|+++|++++.  +++.+|.| ...||.||++ 
T Consensus        84 a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V--~~~G~v~~e~L~~al~--~~T~LVSi-m~aNnE~G~I-  157 (386)
T COG1104          84 AYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV--DSNGLVDLEQLEEALR--PDTILVSI-MHANNETGTI-  157 (386)
T ss_pred             hhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCC--CCCCeEcHHHHHHhcC--CCceEEEE-EecccCeeec-
Confidence            22    4778999999999888877765   999999999  3468899999999999  77888877 7889999995 


Q ss_pred             CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH
Q 015435          196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA  275 (407)
Q Consensus       196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~  275 (407)
                        .++++|.++|+++|+++.+|.+. .++--+.+     +    ....-.+...|-.|.+|..|  +|.++  .+ +.  
T Consensus       158 --QpI~ei~~i~k~~~i~fHvDAvQ-a~Gkipi~-----~----~~~~vD~ls~SaHK~~GpkG--iGaLy--v~-~~--  218 (386)
T COG1104         158 --QPIAEIGEICKERGILFHVDAVQ-AVGKIPID-----L----EELGVDLLSFSAHKFGGPKG--IGALY--VR-PG--  218 (386)
T ss_pred             --ccHHHHHHHHHHcCCeEEEehhh-hcCceecc-----c----cccCcceEEeehhhccCCCc--eEEEE--EC-CC--
Confidence              56888888899999999999974 34432211     1    11124577888999999887  68884  33 21  


Q ss_pred             HHHHHHHhh-----hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CC---CCCcc
Q 015435          276 SRVESQLKL-----VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR-GT---PGDWS  346 (407)
Q Consensus       276 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~---~~~~~  346 (407)
                      -++...+..     ..+..  +.+.++..+...+++...      +.++...+++.+.|+.|.+.|.+. +.   ...-.
T Consensus       219 ~~~~p~i~GGgQE~g~RsG--Tenv~~Ivg~~~A~~~a~------~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~  290 (386)
T COG1104         219 VRLEPLIHGGGQERGLRSG--TENVPGIVGFGKAAEIAV------EELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDE  290 (386)
T ss_pred             CccCceeccCcCCCCCCCC--CccHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcc
Confidence            111111111     12222  334444444444444321      446677788999999999999975 31   11112


Q ss_pred             cccCCceeEEecCCCHHHHHHhHhhccEEEcCC-----------------C----------eEEecC-CCCCChhHHHHH
Q 015435          347 HIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD-----------------G----------RISMAG-LSSKTVPHLTDA  398 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g-----------------g----------Ris~~~-~~~e~i~~~~~~  398 (407)
                      ...|..-.|.+.++..|.+...|+.+||+++.|                 |          |||++. .+++|++++++.
T Consensus       291 ~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~  370 (386)
T COG1104         291 PRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEA  370 (386)
T ss_pred             cCCCCeEEEEeCCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHH
Confidence            335566667888999999999999999999876                 1          999987 467999999999


Q ss_pred             HHHHHHhh
Q 015435          399 IHAAVTRM  406 (407)
Q Consensus       399 l~~~l~~~  406 (407)
                      ++++++++
T Consensus       371 l~~~i~~l  378 (386)
T COG1104         371 LKEIIKRL  378 (386)
T ss_pred             HHHHHHHH
Confidence            99998875

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.6e-21  Score=182.31  Aligned_cols=319  Identities=20%  Similarity=0.190  Sum_probs=217.5

Q ss_pred             cccchhHHHHHHHHhccccccc--cCCC----CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVK--EYLP----IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA  121 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~--~y~~----~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~  121 (407)
                      +.|..++.++.+.+.......+  .+..    ..-+++.|+.+++++ +...    .++|++  |+|+|+++.++...+.
T Consensus        33 ~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~-~a~~----~~eIvf--t~~tT~aln~va~~l~  105 (405)
T COG0520          33 QKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFL-NADS----SDEIVF--TRGTTEALNLVARGLG  105 (405)
T ss_pred             cCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHh-CCCC----CCeEEE--eCChhHHHHHHHHHhh
Confidence            4477777777666531111222  1211    114778899999998 4321    388999  9999999999964443


Q ss_pred             h-hcCCCeEEecCCCCCChHHHHh----hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCC
Q 015435          122 R-HYHQLTIYIPQPTWGNHPKVFT----LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPT  196 (407)
Q Consensus       122 ~-~~~gd~Vi~~~p~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~  196 (407)
                      . +.+||+|++++-.|+...-.++    ..|++++.+|++  +++.++.+.++..+.  ++++++.+ +..+|.||++. 
T Consensus       106 ~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~--~~g~~~~~~~~~~i~--~~Tklvai-s~vSn~tG~~~-  179 (405)
T COG0520         106 RSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD--DDGLLDLDALEKLIT--PKTKLVAL-SHVSNVTGTVN-  179 (405)
T ss_pred             hhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC--CCCCcCHHHHHHhcC--CCceEEEE-ECccccccccc-
Confidence            2 5789999999988876554443    569999999993  567899999999887  77888888 89999999955 


Q ss_pred             HHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCc-cccccCCCcceeEEeecChhhH
Q 015435          197 LEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAK-NMGLYGERVGALSIVCKTEDVA  275 (407)
Q Consensus       197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~~G~r~G~~~~v~~~~~~~  275 (407)
                        ++++|+++|+++|+++++|.+.+.-... .     .+    ...+..++.+|..| .+|..|  +|.+  .++ +++.
T Consensus       180 --pv~~I~~la~~~ga~v~VDaaq~~~h~~-i-----dv----~~l~~Df~afsgHKwl~gP~G--iGvL--y~r-~~~l  242 (405)
T COG0520         180 --PVKEIAELAHEHGALVLVDAAQAAGHLP-I-----DV----QELGCDFLAFSGHKWLLGPTG--IGVL--YVR-KELL  242 (405)
T ss_pred             --hHHHHHHHHHHcCCEEEEECccccCccC-C-----Cc----hhcCCCEEEEcccccccCCCc--eEEE--EEc-hHHH
Confidence              5999999999999999999985433321 1     11    22356789999999 666446  6777  455 3333


Q ss_pred             HHHHHHHhh------------------hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          276 SRVESQLKL------------------VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALS  337 (407)
Q Consensus       276 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  337 (407)
                      +.+......                  ..+....+++..+...+..+++-..     ....++..++.++..+++.+.|+
T Consensus       243 ~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~-----~ig~~~i~~~e~~L~~~~~~~L~  317 (405)
T COG0520         243 EELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLL-----EIGMEAIEAHERELTEYLLEGLS  317 (405)
T ss_pred             hhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHh
Confidence            332110000                  0011112333333333333333211     12356788889999999999999


Q ss_pred             hcCCCCCcccccC----CceeEEec--CCCHHHHHHhHhhccEEEcCCC----------------eEEecC-CCCCChhH
Q 015435          338 ARGTPGDWSHIIK----QIGMFTFT--GLNSEQVAFMTKEYHIYMTSDG----------------RISMAG-LSSKTVPH  394 (407)
Q Consensus       338 ~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~l~~~gi~~~~gg----------------Ris~~~-~~~e~i~~  394 (407)
                      +++.   +.+..+    .++.+.|.  +.....+...|.++||.++.|.                |+|++. .++||+++
T Consensus       318 ~~~~---v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~  394 (405)
T COG0520         318 ELPG---VEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDR  394 (405)
T ss_pred             cCCC---eEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHH
Confidence            8864   555433    56766654  7778888888888899998871                999875 47799999


Q ss_pred             HHHHHHHHHH
Q 015435          395 LTDAIHAAVT  404 (407)
Q Consensus       395 ~~~~l~~~l~  404 (407)
                      +++.|+++.+
T Consensus       395 l~~aL~~~~~  404 (405)
T COG0520         395 LLEALKKALA  404 (405)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.91  E-value=4.5e-22  Score=189.40  Aligned_cols=288  Identities=18%  Similarity=0.165  Sum_probs=190.0

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh-cCCCeEEecCCCCCChHHHH---hhcCceeeE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH-YHQLTIYIPQPTWGNHPKVF---TLAGLSVKT  152 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~-~~gd~Vi~~~p~y~~~~~~~---~~~G~~~~~  152 (407)
                      +.++|+.+++++ +.     ++++|++  |+|+|+++.+++..+... .+||.|+++..+|+.+...+   +..|.+++.
T Consensus        44 ~~~~r~~la~~~-g~-----~~~~i~~--t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~  115 (379)
T TIGR03402        44 VEEAREQVAKLL-GA-----EPDEIIF--TSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTY  115 (379)
T ss_pred             HHHHHHHHHHHh-CC-----CCCeEEE--eCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEE
Confidence            567788888887 42     2478999  999999999885433222 35688999888887765443   356999999


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      +|.+  .++.+|++++++.++  ++++++++ ++++||||.+++   +++|+++|+++|+++++|++++. ...+.  + 
T Consensus       116 v~~~--~~g~~~~~~l~~~i~--~~~~lv~i-~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~~~~~-g~~~~--~-  183 (379)
T TIGR03402       116 LPVD--EEGRLDLEELRAAIT--DDTALVSV-MWANNETGTIFP---IEEIGEIAKERGALFHTDAVQAV-GKIPI--D-  183 (379)
T ss_pred             EccC--CCCcCCHHHHHHhcC--CCcEEEEE-EcccCCeeeccc---HHHHHHHHHHcCCEEEEECcccc-ccccc--C-
Confidence            9883  346699999999987  56666666 899999999887   56788889999999999998753 21111  1 


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhh-h--hhcccCCCChhHHHHHHHHhcChh
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL-V--IRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                        +    ......+++.|.+|.+|.+|  +|++  +.+...   .+...... .  ......+++..+..++..+++-. 
T Consensus       184 --~----~~~~~D~~~~s~~K~~gp~G--~g~l--~v~~~~---~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-  249 (379)
T TIGR03402       184 --L----KEMNIDMLSLSGHKLHGPKG--VGAL--YIRKGT---RFRPLLRGGHQERGRRAGTENVPGIVGLGKAAELA-  249 (379)
T ss_pred             --c----ccCCCCEEEEcHHHcCCCCc--eEEE--EECCCC---CCCCcccCCccCCCcCCCCccHHHHHHHHHHHHHH-
Confidence              1    11233477778889777556  6777  344221   11111100 0  00112244555555555545422 


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcccccC---C--cee-EEecCCCHHHHHHhHhhccEEEcCC---
Q 015435          310 MYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWSHIIK---Q--IGM-FTFTGLNSEQVAFMTKEYHIYMTSD---  379 (407)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~---~--~~~-~~~~~~~~~~~~~~l~~~gi~~~~g---  379 (407)
                           .+..++..++++++++++.+.|.+ ++.   +.+..+   .  +.+ |.+.+.+.+.+...|+++||.+.+|   
T Consensus       250 -----~~~~~~~~~~~~~l~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c  321 (379)
T TIGR03402       250 -----TEHLEEENTRVRALRDRLEAGLLARIPD---ARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGSAC  321 (379)
T ss_pred             -----HHhHHHHHHHHHHHHHHHHHHHHhhCCC---EEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhc
Confidence                 134566678888899999998875 432   333321   1  122 2334567777777778899998652   


Q ss_pred             ----------------------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          380 ----------------------G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 ----------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                                            |  |+|++. .+++|++++++.|+++++.+
T Consensus       322 ~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~  373 (379)
T TIGR03402       322 TSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARL  373 (379)
T ss_pred             CCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                  3  999876 47799999999999988653

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.91  E-value=7.3e-22  Score=190.96  Aligned_cols=345  Identities=12%  Similarity=0.102  Sum_probs=208.1

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc--CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE--YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++++||+..|....+.| ..++.+++++.+++.  ......  +.......++.+.+++...+.     ..+.+++ 
T Consensus        50 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~--~~~~~~~~~~~~~~~~~la~~L~~~~p~~-----~~~~v~f-  120 (451)
T PRK06918         50 DVDGNQYIDFAGAIGTINVG-HSHPKVKEALHKQVD--QYIHTGFNVMMYEPYIELAEKLAALAPGS-----FDKKVLF-  120 (451)
T ss_pred             eCCCCEEEEcCCchhhcCCC-CCCHHHHHHHHHHHH--hccCccccccccHHHHHHHHHHHHhCCCC-----CCCEEEE-
Confidence            34678999999997655667 667788888888876  211111  111222344555555544111     0157999 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-Cc-------------eeeEEEeecCC--CCCcC----
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-GL-------------SVKTYRYYDPA--TRGLN----  164 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~~--~~~~d----  164 (407)
                       ++||++|++.++++.+......+|+....+|++........ |.             .+..+|..+..  ..+..    
T Consensus       121 -~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (451)
T PRK06918        121 -LNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQY  199 (451)
T ss_pred             -cCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHH
Confidence             99999999999998877765567999898888776544322 11             12222221100  01111    


Q ss_pred             ----hhhHHHHHHc--CCCCcEEEEecCCCCCC-CCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHH
Q 015435          165 ----FQGLLEDLRA--APSGAIVLLHACAHNPT-GVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR  236 (407)
Q Consensus       165 ----~~~l~~~i~~--~~~~~~v~i~~~p~NPt-G~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~  236 (407)
                          .+.+++.+..  .++..+.+| ..|.++. |.+ .+.+.+++|.++|++||+++|+||+|.+|.+.+   ..++..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~iAavi-~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g---~~~a~~  275 (451)
T PRK06918        200 DDFMIEEFKNFFISEVAPETIAAVV-MEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTG---KYFAIE  275 (451)
T ss_pred             HHHHHHHHHHHHHhhcCCCceEEEE-ECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccC---ceehhH
Confidence                1223333321  123333344 3455554 654 556669999999999999999999999998764   223333


Q ss_pred             HHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435          237 MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTL  316 (407)
Q Consensus       237 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  316 (407)
                      .+....+    +.|+||.++ +|+|+||+  +++     +++.+.+.......+.+.+++++.++.+.++-..       
T Consensus       276 ~~~v~pD----i~t~sK~l~-~G~pig~v--~~~-----~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~-------  336 (451)
T PRK06918        276 HFDVVPD----LITVSKSLG-AGVPISGV--IGR-----KEIMDESAPGELGGTYAGSPLGCAAALAVLDIIE-------  336 (451)
T ss_pred             hcCCCCC----EEeeehhhc-CCCccEEE--EEc-----HHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHH-------
Confidence            3321122    447999999 89999999  566     4455544433344556888888998777665221       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccccCCceeEEecCC--------CHH---HHHHhHhhccEEEcCCC---
Q 015435          317 ELKAMADRIISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFTGL--------NSE---QVAFMTKEYHIYMTSDG---  380 (407)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~l~~~gi~~~~gg---  380 (407)
                       -....++.+++.+++.+.|+++  +.+ .+..+.+.|+++.|.-.        +.+   .+...+.++||.+.+++   
T Consensus       337 -~~~~~~~~~~~g~~l~~~l~~l~~~~~-~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~  414 (451)
T PRK06918        337 -KENLNDRAIELGKVVMNRFEEMKNKYN-CIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYG  414 (451)
T ss_pred             -HCCHHHHHHHHHHHHHHHHHHHHhhCC-CceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCC
Confidence             0122233444445555555443  111 12334556887776421        222   23344466899998863   


Q ss_pred             ---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 ---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 ---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                         ||+++. ++++++++++++|.++++++
T Consensus       415 ~~lrl~p~l~~t~~~id~~l~~l~~~l~~~  444 (451)
T PRK06918        415 NVIRVLMPLVITDEQLEEGLTIIEESLQAC  444 (451)
T ss_pred             CEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence               888754 68899999999999998753

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.90  E-value=1.6e-21  Score=187.07  Aligned_cols=340  Identities=10%  Similarity=0.049  Sum_probs=205.0

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ..+++++||+..|....+.| ..++++++++.+++.  ......+  .+.....++.+.+++...+.     ..+.+++ 
T Consensus        29 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~a~~~ql~--~~~~~~~~~~~~~~~~~la~~l~~~~p~~-----~~~~v~f-   99 (420)
T TIGR00700        29 DVDGNRLIDFASGIAVLNIG-HSHPRVVDAVRTQVA--EFTHTCFMVTPYEGYVALAEKLNRIAPGS-----GPKKSVF-   99 (420)
T ss_pred             eCCCCEEEECccCHHhccCC-CCCHHHHHHHHHHHH--hccCccccccCChHHHHHHHHHHHhCCCC-----CCCEEEE-
Confidence            34678999999997655667 667788888888886  2212212  12222345555555544111     1257999 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-C--------c-----eeeEEEeecCCCC-----Cc--
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-G--------L-----SVKTYRYYDPATR-----GL--  163 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G--------~-----~~~~v~~~~~~~~-----~~--  163 (407)
                       +++|++|++.++++.+......+|+...-+|++........ |        .     .+..++..+....     ..  
T Consensus       100 -~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (420)
T TIGR00700       100 -FNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLST  178 (420)
T ss_pred             -eCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhH
Confidence             99999999999988877765567888888888775543321 1        1     1122222110000     00  


Q ss_pred             --ChhhHHHHHH--cC-CCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435          164 --NFQGLLEDLR--AA-PSGAIVLLHACAHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM  237 (407)
Q Consensus       164 --d~~~l~~~i~--~~-~~~~~v~i~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~  237 (407)
                        +++.+++.+.  .. ++..++++ -.-+.-+|..+ +.+.+++|.++|++||+++|+||+|.+|.+.+   ..++...
T Consensus       179 ~~~~~~~~~~~~~~~~~~~iAavi~-Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g---~~~a~~~  254 (420)
T TIGR00700       179 DGELAAARAIFVIDVGANNVAALVI-EPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG---AMFACEH  254 (420)
T ss_pred             HHHHHHHHHHHHhhcCCCcEEEEEE-CCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc---hhHHHhh
Confidence              2456666653  12 33455555 44455567765 55569999999999999999999999998764   2333322


Q ss_pred             HHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHH
Q 015435          238 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLE  317 (407)
Q Consensus       238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  317 (407)
                      +.. ..+   +.++||.++ +|+|+||+  +++     +++.+.+.......+.+.++++|.++.+.++-..        
T Consensus       255 ~~~-~pD---i~~lsK~l~-~G~pig~v--~~~-----~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~--------  314 (420)
T TIGR00700       255 EGP-EPD---LITTAKSLA-DGLPLSGV--TGR-----AEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIE--------  314 (420)
T ss_pred             cCC-CCC---EEEeecccc-CCcceEEE--Eec-----HHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHH--------
Confidence            211 122   345999999 89999999  566     4455544433334556788888988877664211        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh----cCCCCCcccccCCceeEEecCC--------CHHH---HHHhHhhccEEEcCCC--
Q 015435          318 LKAMADRIISMRQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGL--------NSEQ---VAFMTKEYHIYMTSDG--  380 (407)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~--------~~~~---~~~~l~~~gi~~~~gg--  380 (407)
                      -+...++.++..+++.+.|++    .+.   +..+.+.|. +.++.+        +.+.   +...+.++||.+.|++  
T Consensus       315 ~~~~~~~~~~~g~~l~~~L~~l~~~~~~---~~~vrg~G~-~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f  390 (420)
T TIGR00700       315 SEGLIERARQIGRLVTDRLTTLKAVDPR---IGDVRGLGA-MIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMF  390 (420)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhCCC---EEEeeccce-EEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCC
Confidence            011222333333334444433    221   333445544 444422        1222   3333456899999863  


Q ss_pred             ----eEEecC-CCCCChhHHHHHHHHHHH
Q 015435          381 ----RISMAG-LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       381 ----Ris~~~-~~~e~i~~~~~~l~~~l~  404 (407)
                          ||+++. .+++++++++++|.++++
T Consensus       391 ~~~lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       391 GNIIRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence                787653 588999999999999875

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.90  E-value=9.6e-22  Score=184.90  Aligned_cols=316  Identities=18%  Similarity=0.173  Sum_probs=193.4

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      +.+||.+.-.  .+.|...+++.+.+++.... +  +   |.   +.+++++++.+++....+.    +++++  |+|+|
T Consensus         8 ~~~ina~g~~--t~~g~s~~~~~v~~a~~~~~-~--~---~~---~~~~~~~~~~~~~a~~~g~----~~~~~--~~g~t   70 (363)
T TIGR01437         8 KKVINASGKM--TILGVSTVSDEVADAQKRGA-Q--N---YF---EIKELVNKTGEYIANLLGV----EDAVI--VSSAS   70 (363)
T ss_pred             ceEEECCcEe--ecCCCCCCCHHHHHHHHHHH-h--c---CC---CHHHHHHHHHHHHHHhhCC----CeEEE--EcCHH
Confidence            4566655332  24555555555544444433 1  1   32   2345555555544222221    57888  99999


Q ss_pred             cHHHHHHHHHHhhcCCC---------------eEEecCCCCCCh----HHHHhhcCceeeEEEeecCCCCCcChhhHHHH
Q 015435          111 GSLRVGAEFLARHYHQL---------------TIYIPQPTWGNH----PKVFTLAGLSVKTYRYYDPATRGLNFQGLLED  171 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd---------------~Vi~~~p~y~~~----~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~  171 (407)
                      +++.+++  ...+.+||               +|+++.|.|..|    ...+...|++++.++.    .+.+|+++++++
T Consensus        71 ~al~~al--~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~----~~~~d~~~le~a  144 (363)
T TIGR01437        71 AGIAQSV--AAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY----ANECSAEQLEAA  144 (363)
T ss_pred             HHHHHHH--HHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC----CCCCCHHHHHHh
Confidence            9999995  44577887               999999888766    4677789999999976    245999999999


Q ss_pred             HHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          172 LRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       172 i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                      +.  +++++++++++|+||+|.+.+   +++|+++|++||+++|+|++|..        +...   .... +..++++|+
T Consensus       145 i~--~~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~--------~~~~---~~~~-g~D~~~~S~  207 (363)
T TIGR01437       145 IT--EKTAAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE--------DLQK---YYRL-GADLVIYSG  207 (363)
T ss_pred             cC--hhceEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC--------chHH---HHHc-CCCEEEEeC
Confidence            98  667776655888999999876   56778889999999999999851        1111   1122 236777999


Q ss_pred             CccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcc-cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 015435          252 AKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPM-YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQ  330 (407)
Q Consensus       252 sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  330 (407)
                      +|.+  +|++.|++  +.+ ++..+.+........+.. ....+..++.++...+.+.         ..+..+.+.++++
T Consensus       208 ~K~l--~gp~~G~l--~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~---------~~~~~~~~~~~~~  273 (363)
T TIGR01437       208 AKAI--EGPTSGLV--LGK-KKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLST---------GKESGAEMVAKLT  273 (363)
T ss_pred             Cccc--CCCceEEE--EEc-HHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHcc---------CcccHHHHHHHHH
Confidence            9976  57888988  454 433333211101100000 0011223333333333221         1223334445677


Q ss_pred             HHHHHHHhcCCCCCccccc--CCcee------EEec----CCCHHHHHHhHhhcc--EEEcC----CC--eEEecCCCCC
Q 015435          331 QLFDALSARGTPGDWSHII--KQIGM------FTFT----GLNSEQVAFMTKEYH--IYMTS----DG--RISMAGLSSK  390 (407)
Q Consensus       331 ~l~~~l~~~~~~~~~~~~~--~~~~~------~~~~----~~~~~~~~~~l~~~g--i~~~~----gg--Ris~~~~~~e  390 (407)
                      ++.+.|.+++.   +....  +..+.      +.+.    +++.+.+.+.|.+++  |..++    .|  |+++...+++
T Consensus       274 ~l~~~L~~i~g---~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~~~~~  350 (363)
T TIGR01437       274 PFIEALNTLKG---VSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRSVTGG  350 (363)
T ss_pred             HHHHHHhcCCC---eEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeecCCHH
Confidence            88999988742   44331  11111      1121    457777777777666  77764    23  7777667889


Q ss_pred             ChhHHHHHHHHHH
Q 015435          391 TVPHLTDAIHAAV  403 (407)
Q Consensus       391 ~i~~~~~~l~~~l  403 (407)
                      |++.++++|++++
T Consensus       351 e~~~~~~~l~~~~  363 (363)
T TIGR01437       351 QLDIIVERIREIV  363 (363)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998753

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.90  E-value=1.4e-21  Score=187.11  Aligned_cols=334  Identities=12%  Similarity=0.086  Sum_probs=210.7

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+.++|||..|....+.| ...+++++++.+++. ...............++.+.+++++ +.       +.+++  ++
T Consensus        34 ~~g~~~lD~~s~~~~~~~G-h~~p~v~~a~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~-~~-------~~~~~--~~  101 (401)
T TIGR01885        34 VEGKRYLDFLSAYSAVNQG-HCHPKIVKALTEQAQ-KLTLSSRAFYNDVFGEFAEYVTKLF-GY-------DKVLP--MN  101 (401)
T ss_pred             CCCCEEEEcccCHhhccCC-CCCHHHHHHHHHHHH-hccccccccCCHHHHHHHHHHHhhc-CC-------CEEEE--eC
Confidence            4568999999885433445 456777777777765 1111111112334566777777765 32       68899  99


Q ss_pred             CcccHHHHHHHHHHhh-------cCC-CeEEecCCCCCCh-HHHHhhcCc------------eeeEEEeecCCCCCcChh
Q 015435          108 SGTGSLRVGAEFLARH-------YHQ-LTIYIPQPTWGNH-PKVFTLAGL------------SVKTYRYYDPATRGLNFQ  166 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~-------~~g-d~Vi~~~p~y~~~-~~~~~~~G~------------~~~~v~~~~~~~~~~d~~  166 (407)
                      +|++|++.+++++...       ..| +.|+...-+|.+. ...+...|-            +++.++.       .|++
T Consensus       102 SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~  174 (401)
T TIGR01885       102 TGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLE  174 (401)
T ss_pred             ccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHH
Confidence            9999999998776543       133 4566677777654 333333221            1222222       2688


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPT-LEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      ++++.+.+.+.....+++...++++|...+ .+.+++|.++|++||+++|+||+|.++++.+   ..+.... .....++
T Consensus       175 ~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G---~~~~~~~-~~~~~di  250 (401)
T TIGR01885       175 ALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTG---KLLCVDH-ENVKPDI  250 (401)
T ss_pred             HHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhhHHhh-cCCCCCE
Confidence            898888643333333444778999999886 4479999999999999999999998877654   2222211 1112233


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                      +   ++||.++..|+|+|++  +++ ++    +.+.+.......+.+.+++.+.++.+.|+...      +  +.+.++.
T Consensus       251 ~---~~gK~l~~g~~~ig~v--~~~-~~----i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~------~--~~l~~~~  312 (401)
T TIGR01885       251 V---LLGKALSGGVYPVSAV--LAD-DD----VMLTIKPGEHGSTYGGNPLACAVAVAALEVLE------E--EKLAENA  312 (401)
T ss_pred             E---EeeccccCCCCCcEEE--EEc-HH----HHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH------h--ccHHHHH
Confidence            3   3679998766999999  455 43    44444332222344667788888887776332      1  1344677


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCceeEEe-cCCC-----HHHHHHhHhhccEEEcCCC----eEEec-CCCCCChhH
Q 015435          326 ISMRQQLFDALSARGTPGDWSHIIKQIGMFTF-TGLN-----SEQVAFMTKEYHIYMTSDG----RISMA-GLSSKTVPH  394 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~~  394 (407)
                      +++.+++.+.|++++.+ .+....+.|.++.+ ++.+     ...+...|.++||.+.|.+    ||+.. .++++++++
T Consensus       313 ~~~~~~~~~~L~~l~~~-~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l~~t~~~i~~  391 (401)
T TIGR01885       313 EKLGEIFRDQLKKLPKP-IITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDE  391 (401)
T ss_pred             HHHHHHHHHHHHhccCC-ceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEecCCCEEEEeCCccCCHHHHHH
Confidence            77889999999887521 12223455666553 3322     2334455566899998865    77764 258899999


Q ss_pred             HHHHHHHHH
Q 015435          395 LTDAIHAAV  403 (407)
Q Consensus       395 ~~~~l~~~l  403 (407)
                      ++++|++++
T Consensus       392 ~l~~l~~~l  400 (401)
T TIGR01885       392 GLEIIKKVI  400 (401)
T ss_pred             HHHHHHHHh
Confidence            999999876

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.90  E-value=7.1e-22  Score=189.75  Aligned_cols=344  Identities=13%  Similarity=0.104  Sum_probs=211.3

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc--cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK--EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ..+++.+||+..|....+.| ..++.+++++.+++.  .....  .|.......++.+.+++.. ..     ..+.+++ 
T Consensus        37 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~--~~~~~~~~~~~~~~~~~la~~L~~~~-p~-----~~~~v~f-  106 (443)
T PRK08360         37 DIEGNEYIDFLSDAAVQNVG-HNNPRVVKAIKEQTD--KLIHYTPIYGFPVEPLLLAEKLIEIA-PG-----DNPKVSF-  106 (443)
T ss_pred             ECCCCEEEEccccHhhcccC-CCCHHHHHHHHHHHH--hccCccccccCcHHHHHHHHHHHHhC-CC-----CCCEEEE-
Confidence            45678999999997655677 667788888888886  21111  1211222344555555544 21     1157999 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH-hhcCc------------eeeEEEeecCCC--CC-------
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF-TLAGL------------SVKTYRYYDPAT--RG-------  162 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~-~~~G~------------~~~~v~~~~~~~--~~-------  162 (407)
                       +++|++|++.++++.+.......|+...-+|++..... ...|.            .+..+|..+...  +.       
T Consensus       107 -~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (443)
T PRK08360        107 -GLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCK  185 (443)
T ss_pred             -cCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhH
Confidence             99999999999988877655567888888887764322 21121            123333311100  00       


Q ss_pred             -cChhhHHHHHHc---CCCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435          163 -LNFQGLLEDLRA---APSGAIVLLHACAHNPTGVDPT-LEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM  237 (407)
Q Consensus       163 -~d~~~l~~~i~~---~~~~~~v~i~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~  237 (407)
                       -+++.+++.+..   ..+.+++++ ...+||||.+++ .+.+++|.++|++||+++|+||+|.++++.+   ..+....
T Consensus       186 ~~~~~~~~~~l~~~~~~~~iAAvi~-eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G---~~~a~~~  261 (443)
T PRK08360        186 MECVEYIKEKFEGEVYAEGVAALFA-EPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTG---KWFAIEH  261 (443)
T ss_pred             HHHHHHHHHHHHhccCCCCeEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---cchhhhh
Confidence             123455666653   134556555 446799999877 5579999999999999999999999987754   2222222


Q ss_pred             HHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHH
Q 015435          238 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLE  317 (407)
Q Consensus       238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  317 (407)
                      + ....+++   ++||.++ +|+|+||+  +++     +++.+.+.......+.+.+++++.++.+.++...      + 
T Consensus       262 ~-~~~pDii---tlsK~l~-~G~pigav--~~~-----~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~------~-  322 (443)
T PRK08360        262 F-GVEPDII---TLGKPLG-GGLPISAT--IGR-----AEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIE------E-  322 (443)
T ss_pred             c-CCCCCEE---Eeccccc-CCceeEEE--EEc-----HHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHH------H-
Confidence            2 2223333   6799999 89999999  565     3444444333333455677888888888776431      1 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc--CCCCCcccccCCceeEEe--c-CC-----C---HHHHHHhHhhccEEEcCC-C---
Q 015435          318 LKAMADRIISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTF--T-GL-----N---SEQVAFMTKEYHIYMTSD-G---  380 (407)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~--~-~~-----~---~~~~~~~l~~~gi~~~~g-g---  380 (407)
                       +.+.++++++.+++.+.|+++  ..+ .+..+...|.++..  . +-     +   ...+...+.++|+.+.+. +   
T Consensus       323 -~~l~~~~~~~g~~l~~~L~~l~~~~~-~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~l  400 (443)
T PRK08360        323 -KNLLKRAEKLGNYTKKRLEEMKKKHE-LIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFSGNVL  400 (443)
T ss_pred             -cCHHHHHHHHHHHHHHHHHHHHHhCC-CeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecCCCEE
Confidence             134566666777777766654  111 12223344444432  1 10     1   123444456689998764 3   


Q ss_pred             eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |++... +++++++++++++.++++.+
T Consensus       401 r~~P~l~~t~~~id~~~~~l~~~l~~~  427 (443)
T PRK08360        401 RIQPPLTIEKEVLDEGLDILEEAIEDV  427 (443)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            775443 58899999999999998754

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.90  E-value=1.7e-21  Score=185.03  Aligned_cols=279  Identities=17%  Similarity=0.185  Sum_probs=184.5

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~  148 (407)
                      +......+++++++++ +.       +...+  +++|+.++..+  +...+.+||+|+++.+.|..+...+    ...|+
T Consensus        63 ~~p~~~~Le~~lA~l~-G~-------~~~~~--~~sG~~Ai~~~--l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~  130 (398)
T PRK07504         63 SNPTVDMFEKRMCALE-GA-------EDARA--TASGMAAVTAA--ILCQVKAGDHVVAARALFGSCRYVVETLLPRYGI  130 (398)
T ss_pred             CCchHHHHHHHHHHHh-CC-------CeeeE--ecCHHHHHHHH--HHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCe
Confidence            4456789999999987 53       44556  78889999776  3455789999999999999765544    35688


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++       .+|++++++++.  +++++|++ ++|+||||.+.+   +++|+++|+++|+++|+|++|+...... 
T Consensus       131 ~v~~vd-------~~d~e~l~~ai~--~~tklV~l-esp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~~-  196 (398)
T PRK07504        131 ESTLVD-------GLDLDNWEKAVR--PNTKVFFL-ESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQK-  196 (398)
T ss_pred             EEEEEC-------CCCHHHHHHhcC--cCceEEEE-ECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccCC-
Confidence            887773       268999999887  67788777 999999999886   7788888999999999999987554321 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                           +.    . ....+++.|+||.++.+|+++|++  ++.+++...+   .+...........+...+..+...++. 
T Consensus       197 -----~~----~-~gaDivv~S~sK~l~g~g~~~GG~--vv~~~~~i~~---~~~~~~~~~g~~~s~~~A~~~l~~L~t-  260 (398)
T PRK07504        197 -----PL----E-LGAHIVVYSATKHIDGQGRCLGGV--VLSDKAWIEE---HLQDYFRHTGPSLSPFNAWTLLKGLET-  260 (398)
T ss_pred             -----ch----h-hCCCEEEeeccccccCCccceEEE--EEeCcHHHHH---HHHHHHHHhCCCCCHHHHHHHHhccch-
Confidence                 11    1 134678999999999899999765  3444432221   222222222234444444444433332 


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCccc---------ccCCceeEEec-CCCHHHHHHhHhhc
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGT------PGDWSH---------IIKQIGMFTFT-GLNSEQVAFMTKEY  372 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~l~~~  372 (407)
                               +....++..++...+.+.|++.+.      |..-..         ...-||++.|. .-+.+.+.++++..
T Consensus       261 ---------l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l  331 (398)
T PRK07504        261 ---------LPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNAL  331 (398)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhC
Confidence                     445555666788888888886542      110000         11236666654 22345555555554


Q ss_pred             cEEEc---CC-------------------------C------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          373 HIYMT---SD-------------------------G------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       373 gi~~~---~g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+.-.   =|                         |      |||++-   |+.+.+++.|.++|+.
T Consensus       332 ~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~  395 (398)
T PRK07504        332 KIVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGL---EDTDDLIEDLAAALKK  395 (398)
T ss_pred             CcceecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHh
Confidence            44221   11                         1      888873   7899999999998875

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.90  E-value=4.5e-22  Score=189.18  Aligned_cols=295  Identities=12%  Similarity=0.123  Sum_probs=189.2

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh----cCCCeEEecCCCCCChHHHHhhcCceeeE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH----YHQLTIYIPQPTWGNHPKVFTLAGLSVKT  152 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~----~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~  152 (407)
                      ..++++.+++++ +.     +++++++  ++|+++++..++..+..+    .+||+|++++++|..+...++..|++++.
T Consensus        61 ~~~~~~~la~~~-g~-----~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~  132 (373)
T TIGR03812        61 EEEVVGSLGNLL-HL-----PDAYGYI--VSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRY  132 (373)
T ss_pred             HHHHHHHHHHHh-CC-----CCCCeEE--eccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEE
Confidence            366777788777 43     2367888  999999987774333221    36789999999999999999999999999


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC--c
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD--A  230 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~--~  230 (407)
                      ++.+  .++.+|++++++.+.  +++..+++ .+|+||||++.   ++++|+++|+++|+++++|++|..+...-..  .
T Consensus       133 v~~~--~~~~~d~~~l~~~l~--~~~~~vv~-~~~~~~tG~~~---~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~  204 (373)
T TIGR03812       133 APLD--EDYTVDVKDVEDLID--DNTIGIVG-IAGTTELGQID---DIEELSKIALENGIYLHVDAAFGGFVIPFLKKGY  204 (373)
T ss_pred             EeeC--CCCCcCHHHHHHHHh--hCcEEEEE-ECCCCCCCccC---CHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCC
Confidence            9983  457789999999987  44544454 34799999975   4778888899999999999998755321000  0


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcc-----cCCCChhHHHHHHHHh
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPM-----YSSPPIHGASIVATIL  305 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l  305 (407)
                      ....+. + ....-..+..|.+| |++++.|+|++  +..++++.+.+.. ........     ..+.+...+.++...+
T Consensus       205 ~~~~~d-~-~~~~~d~~~~s~~K-~~~~~~~~G~~--~~~~~~~~~~l~~-~~~~~~~~~~~~~~gt~~~~~~~~~~~~l  278 (373)
T TIGR03812       205 NPPPFD-F-SLPGVQSITIDPHK-MGLSPIPAGGI--LFRSKSYLKYLSV-DAPYLTVKKQATITGTRSGASAAATYAVI  278 (373)
T ss_pred             CCCCcc-c-cCCCCCEEEECccc-cCCCcCCceEE--EEeCHHHHhhhcc-cCcccCCCCCcceEeechhHHHHHHHHHH
Confidence            000000 0 00111234567778 66678888877  4555554443311 00000000     0122333344444444


Q ss_pred             cChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCC-----
Q 015435          306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDG-----  380 (407)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~gg-----  380 (407)
                      +...     +...++.++++.++++++.+.|++++.   ..+..+..++..+..-+.+.+.+.|.++||.+..+.     
T Consensus       279 ~~l~-----~~g~~~~~~~~~~~~~~l~~~L~~~g~---~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~i  350 (373)
T TIGR03812       279 KYLG-----REGYRKIVAECMENTRYLVEELKKIGF---EPVIEPVLNIVAFEVDDPEEVRKKLRDRGWYVSVTRCPKAL  350 (373)
T ss_pred             HHhC-----HHHHHHHHHHHHHHHHHHHHHHHhCCC---eEEcCCCceEEEEEeCCHHHHHHHHHHCCceeccCCCCCEE
Confidence            4221     134677889999999999999998873   223344444444322234455555666899997752     


Q ss_pred             eEEecC-CCCCChhHHHHHHHH
Q 015435          381 RISMAG-LSSKTVPHLTDAIHA  401 (407)
Q Consensus       381 Ris~~~-~~~e~i~~~~~~l~~  401 (407)
                      |++++. .+++|+++++++|++
T Consensus       351 Ris~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       351 RIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             EEEEECCCCHHHHHHHHHHHhh
Confidence            998764 478999999999875

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK06460 hypothetical protein; Provisional

Probab=99.90  E-value=2e-21  Score=183.28  Aligned_cols=277  Identities=16%  Similarity=0.138  Sum_probs=176.6

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCC----ChHHHHhhcCce
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWG----NHPKVFTLAGLS  149 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~----~~~~~~~~~G~~  149 (407)
                      .....++++++++++ +.       +..++  ++||++++..++  ...+.+||+|+++.|.|.    .+...++..|++
T Consensus        44 ~p~~~~L~~~lA~l~-g~-------~~~v~--~~sG~~ai~~~l--~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~  111 (376)
T PRK06460         44 NPTVLELTKKIVELE-NA-------EMGVA--FSSGMGAISTTA--LALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVN  111 (376)
T ss_pred             CccHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcE
Confidence            557889999999998 43       22344  556678888873  445789999999987654    344567788999


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                      ++.++..       +.+.+++.+.  ++++++++ ++|+||||.+++.   ++|+++|+++|+++|+|++|......   
T Consensus       112 v~~~~~~-------~~~~l~~~~~--~~tklV~l-~sp~NPtG~v~d~---~~I~~la~~~g~~vivDea~~~~~~~---  175 (376)
T PRK06460        112 VDASNPG-------SDNIIEKAKS--KRYDVVFV-ENITNPLLRVVDI---TELSKVCKENGSILIVDATFSTPINQ---  175 (376)
T ss_pred             EEEECCC-------CHHHHHHhcC--CCceEEEE-ECCCCCCCcccCH---HHHHHHHHHcCCEEEEECCcCccccC---
Confidence            8887652       1233444333  45677777 9999999998875   46777899999999999998754211   


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCcccccc-CCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLY-GERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                         .+   + . .+..+++.|+||.++.. +.++||+  ++ +++    +.+.+......+..+.+...   +..+++..
T Consensus       176 ---~~---l-~-~~~divv~S~sK~l~G~~~~~~G~~--~~-~~~----l~~~l~~~~~~~g~~~~~~~---a~~~l~~~  237 (376)
T PRK06460        176 ---KP---L-E-LGADIVVHSASKFLAGHNDVIAGLA--AG-YGK----LLNVIDQMRRTLGTSLDPHA---AYLTLRGI  237 (376)
T ss_pred             ---Ch---h-h-cCCCEEEeecceeccCCCCceEEEE--ec-CHH----HHHHHHHHHHhcCCCCCHHH---HHHHHhch
Confidence               11   1 1 23468999999998622 3578988  34 454    44444444444433444322   22223332


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---------------ccCCceeEEec-CCCHHHHHHhHhhc
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH---------------IIKQIGMFTFT-GLNSEQVAFMTKEY  372 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~l~~~  372 (407)
                             +.++.+.+++.++++.+.+.|++.+.-..+.+               ....||++.+. +-+.+.+..+++.-
T Consensus       238 -------~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l  310 (376)
T PRK06460        238 -------KTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSL  310 (376)
T ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhC
Confidence                   44667778899999999999987642000000               01246776654 22334455555543


Q ss_pred             cEEE---cCC-------------------------C------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          373 HIYM---TSD-------------------------G------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       373 gi~~---~~g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+..   +=|                         |      |+|++-   |+.+.+++.|.++|+.+
T Consensus       311 ~~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~~  375 (376)
T PRK06460        311 KLIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGI---EDVNDLIEDLDRALSTL  375 (376)
T ss_pred             CcceeccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHhh
Confidence            3211   101                         1      888873   88999999999998764

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.90  E-value=3.6e-21  Score=182.54  Aligned_cols=278  Identities=16%  Similarity=0.161  Sum_probs=186.6

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~  148 (407)
                      +.....++++.++++. +.       ++.++  ++||++|+.+++  ...+.+||+|+++.|+|.+....    +...|+
T Consensus        62 ~~p~~~~le~~lA~l~-g~-------~~~i~--~ssG~~Ai~~~l--~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi  129 (398)
T PRK08249         62 TNPTVQAFEEKVRILE-GA-------EAATA--FSTGMAAISNTL--YTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGV  129 (398)
T ss_pred             CChHHHHHHHHHHHHh-CC-------CeEEE--eCChHHHHHHHH--HHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCe
Confidence            3455788999999988 53       45677  888899998884  44578999999999999876543    446788


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++.       .|+++++++++  ++++++++ ++|+||||.+.+   +++|+++|+++|+++|+|++|..+.... 
T Consensus       130 ~v~~vd~-------~d~e~l~~~i~--~~tklV~i-e~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~-  195 (398)
T PRK08249        130 DVTLCET-------GDHEQIEAEIA--KGCDLLYL-ETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN-  195 (398)
T ss_pred             EEEEcCC-------CCHHHHHHhcC--CCCeEEEE-ECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC-
Confidence            8776643       58899999987  56777777 899999999886   7778888999999999999998654321 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                           +.   .  ....++++|+||.++.+|.++|++  ++.++++.+++.    ..........+...+..+...++  
T Consensus       196 -----~l---~--~~~Divv~S~sK~l~g~~~~~gG~--vv~~~~l~~~l~----~~~~~~g~~~s~~~a~l~l~~l~--  257 (398)
T PRK08249        196 -----PL---A--LGADLVIHSATKFLSGHADALGGV--VCGSKELMEQVY----HYREINGATMDPMSAYLILRGMK--  257 (398)
T ss_pred             -----ch---h--hCCCEEeccCceecCCCCCceEEE--EECCHHHHHHHH----HHHHhcCCCCCHHHHHHHHhCcc--
Confidence                 11   1  123377899999998788887555  355565544443    33333333455555554443333  


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCC-----ccc----ccCCceeEEec-CCCHHHHHHhHhhc
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGT------PGD-----WSH----IIKQIGMFTFT-GLNSEQVAFMTKEY  372 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~-----~~~----~~~~~~~~~~~-~~~~~~~~~~l~~~  372 (407)
                              .+....++..++++.+.+.|++.+.      |..     ...    ...-||++.|. .-+.+.+.++++.-
T Consensus       258 --------tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l  329 (398)
T PRK08249        258 --------TLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKL  329 (398)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhC
Confidence                    2445556677888888888887542      110     000    11246676653 32444455666554


Q ss_pred             cEEE-cC--C-------------------------C------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          373 HIYM-TS--D-------------------------G------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       373 gi~~-~~--g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+.. .+  |                         |      |||++-   |+.+.+++-|.++|+.
T Consensus       330 ~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~  393 (398)
T PRK08249        330 RYAHRAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGI---EDTEDLIADLEQAFAH  393 (398)
T ss_pred             CcceEccCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHH
Confidence            4431 11  1                         1      888873   7888999999888864

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.90  E-value=5.1e-21  Score=181.47  Aligned_cols=276  Identities=16%  Similarity=0.163  Sum_probs=183.4

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCce
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGLS  149 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~~  149 (407)
                      .....++++.+++++ +.       +++++  |+||++|+.+++  ...+.+||+|+++.+.|.+...    .+...|++
T Consensus        60 ~p~~~~le~~la~l~-g~-------~~~v~--~ssG~~Ai~~al--~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~  127 (390)
T PRK08133         60 NPTVTMFQERLAALE-GA-------EACVA--TASGMAAILAVV--MALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIE  127 (390)
T ss_pred             ChHHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcE
Confidence            334778899999987 43       56888  999999999884  4557899999999999987654    44578999


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                      ++.++.       .|++++++.+.  ++++++++ ++|+||||.+.+   +++|+++|+++|+++|+|++|.......  
T Consensus       128 v~~vd~-------~d~~~l~~~i~--~~tklV~i-e~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~--  192 (390)
T PRK08133        128 TTFVDL-------TDLDAWRAAVR--PNTKLFFL-ETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ--  192 (390)
T ss_pred             EEEECC-------CCHHHHHHhcC--cCCeEEEE-ECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence            988866       27788998887  67788777 899999999874   7888888999999999999986444321  


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                          ++    .. ...++++|+||.++.+|.++|++  ++.+++..+++..    ..+......+...+..+   ++.. 
T Consensus       193 ----pl----~~-g~Divv~S~sK~~~g~g~~~GG~--vv~~~~~~~~~~~----~~~~~g~~~~~~~a~~~---l~gl-  253 (390)
T PRK08133        193 ----PL----KL-GADVVIHSATKYLDGQGRVLGGA--VVGSKELMEEVFG----FLRTAGPTLSPFNAWVF---LKGL-  253 (390)
T ss_pred             ----ch----hh-CCcEEEeecceeecCCcceEeEE--EEcCHHHHHHHHH----HHHHhCCCCCHHHHHHH---Hccc-
Confidence                11    11 23578999999999899998665  3444544333332    22222223344333333   3322 


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCC-----ccc----ccCCceeEEec-CCCHHHHHHhHhhcc
Q 015435          310 MYKEWTLELKAMADRIISMRQQLFDALSARGT------PGD-----WSH----IIKQIGMFTFT-GLNSEQVAFMTKEYH  373 (407)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~-----~~~----~~~~~~~~~~~-~~~~~~~~~~l~~~g  373 (407)
                            +.+..+.+++.++...+.+.|++.+.      |..     +..    ....||++.+. .-+.+.+.++++...
T Consensus       254 ------~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~  327 (390)
T PRK08133        254 ------ETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATR  327 (390)
T ss_pred             ------chHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhCC
Confidence                  23455556667788889999887632      110     000    11235666554 213444555555544


Q ss_pred             EEE---cCC-------------------------C------eEEecCCCCCChhHHHHHHHHHHH
Q 015435          374 IYM---TSD-------------------------G------RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       374 i~~---~~g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      +..   .=|                         |      |||++-   |+.+.+++-|+++|+
T Consensus       328 l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~  389 (390)
T PRK08133        328 LISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGL---EDVADIKADLARGLA  389 (390)
T ss_pred             cceEeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHHhh
Confidence            432   101                         1      888773   889999999999875

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.90  E-value=4.9e-21  Score=175.30  Aligned_cols=319  Identities=17%  Similarity=0.180  Sum_probs=218.9

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCC--CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIV--GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH  125 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~--g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~  125 (407)
                      |.|.++-.++..++.  ....++++|..  -+.++++.+...+ +..+    .+-+++  +.+||.+++++  +.+.+.+
T Consensus        11 PGP~~v~~~V~~am~--~~~~~h~s~~F~~~~~~~~~~L~~v~-~t~~----~~~~ll--~gsGt~amEAa--v~sl~~p   79 (383)
T COG0075          11 PGPVPVPPRVLLAMA--RPMVGHRSPDFVGIMKEVLEKLRKVF-GTEN----GDVVLL--SGSGTLAMEAA--VASLVEP   79 (383)
T ss_pred             CCCCCCCHHHHHHhc--CCCCCCCCHHHHHHHHHHHHHHHHHh-cCCC----CcEEEE--cCCcHHHHHHH--HHhccCC
Confidence            567777777777776  33334455522  2455555566555 4321    133444  88999999999  5777889


Q ss_pred             CCeEEecCCCCC--ChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435          126 QLTIYIPQPTWG--NHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI  203 (407)
Q Consensus       126 gd~Vi~~~p~y~--~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i  203 (407)
                      ||+|++...+.+  .+.++++.+|.+++.+..  +++..+|++++++.+++.+..+.+.+ .++.++||+   .+++++|
T Consensus        80 gdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~--~wg~~v~p~~v~~~L~~~~~~~~V~~-vH~ETSTGv---lnpl~~I  153 (383)
T COG0075          80 GDKVLVVVNGKFGERFAEIAERYGAEVVVLEV--EWGEAVDPEEVEEALDKDPDIKAVAV-VHNETSTGV---LNPLKEI  153 (383)
T ss_pred             CCeEEEEeCChHHHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhcCCCccEEEE-EeccCcccc---cCcHHHH
Confidence            999999987654  457789999999999988  68889999999999997666777777 566888999   4579999


Q ss_pred             HHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc-cCCCcceeEEeecChhhHHHHHHH-
Q 015435          204 RQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL-YGERVGALSIVCKTEDVASRVESQ-  281 (407)
Q Consensus       204 ~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~r~G~~~~v~~~~~~~~~~~~~-  281 (407)
                      +++|++||.++|+|.+- .++..+.+.+.         ..-.+++.+--|.++. ||  +|.+   +-+++..+++... 
T Consensus       154 ~~~~k~~g~l~iVDaVs-S~Gg~~~~vd~---------wgiDv~itgSQK~l~~PPG--la~v---~~S~~a~e~~~~~~  218 (383)
T COG0075         154 AKAAKEHGALLIVDAVS-SLGGEPLKVDE---------WGIDVAITGSQKALGAPPG--LAFV---AVSERALEAIEERK  218 (383)
T ss_pred             HHHHHHcCCEEEEEecc-cCCCcccchhh---------cCccEEEecCchhccCCCc--ccee---EECHHHHHHHhcCC
Confidence            99999999999999974 34433232222         2334666666888874 55  4555   3344443433221 


Q ss_pred             -----------Hhhhh--hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 015435          282 -----------LKLVI--RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI  348 (407)
Q Consensus       282 -----------~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  348 (407)
                                 .....  ..+..+++.....++..+++...     .+.+++..++++++.+.+++.++.+|.    +..
T Consensus       219 ~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~-----~EGle~r~~RH~~~~~a~r~~~~alGl----~~~  289 (383)
T COG0075         219 HPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLIL-----EEGLEARIARHRRLAEALRAGLEALGL----ELF  289 (383)
T ss_pred             CCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHcCC----ccc
Confidence                       11111  23444677777777777776432     356889999999999999999999994    433


Q ss_pred             c------CCc-eeEEecCCCHHH-HHHhHhhccEEEcCCC--------eEEe-cCCCCCChhHHHHHHHHHHHhhC
Q 015435          349 I------KQI-GMFTFTGLNSEQ-VAFMTKEYHIYMTSDG--------RISM-AGLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       349 ~------~~~-~~~~~~~~~~~~-~~~~l~~~gi~~~~gg--------Ris~-~~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      .      |.. .++.-.+.+.+. ...+++++|+.+.+|-        ||+. +.++.+++..++.+|..+++++|
T Consensus       290 ~~~~~~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g  365 (383)
T COG0075         290 ADPERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELG  365 (383)
T ss_pred             cCcccCCCceEEEECCCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence            2      111 111111445444 3468888899999872        9964 44788999999999999998875

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.89  E-value=3.9e-21  Score=182.33  Aligned_cols=275  Identities=15%  Similarity=0.141  Sum_probs=179.8

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~  148 (407)
                      +.....+|++.+++++ +.       ++.++  ++||+.++..+  +...+.+||+|+++.|.|......+.    ..|+
T Consensus        59 ~~pt~~~Le~~lA~l~-G~-------~~al~--~~sG~~Ai~~~--l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi  126 (386)
T PRK06767         59 GNPTVKLFEERMAVLE-GG-------EEALA--FGSGMAAISAT--LIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMI  126 (386)
T ss_pred             CCcchHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCe
Confidence            4556789999999988 53       45666  77778888877  34557899999999999887665544    3455


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      ++..++.       .|++++++++.  ++++++++ ++|+||||.+.+   +++|+++|+++|+++|+|++|...... .
T Consensus       127 ~~~~~~~-------~d~~~l~~~i~--~~tklV~l-esp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~-~  192 (386)
T PRK06767        127 THSFCDM-------ETEADIENKIR--PNTKLIFV-ETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQ-R  192 (386)
T ss_pred             EEEEeCC-------CCHHHHHHhhC--cCceEEEE-eCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccccC-C
Confidence            5444422       47889999887  56778777 899999999876   678888899999999999998643322 1


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                           ++    . ....+++.|+||.++.+|.++ |++  +++ ++..+++......   ......+...+.++...++.
T Consensus       193 -----pl----~-~g~Div~~S~sK~l~g~g~~~gG~v--~~~-~~~i~~~~~~~~~---~~g~~~~~~~a~l~~~~L~t  256 (386)
T PRK06767        193 -----PL----E-LGCDAVVHSATKYIGGHGDVVAGVT--ICK-TRALAEKIRPMRK---DIGGIMAPFDAWLLLRGLKT  256 (386)
T ss_pred             -----ch----h-cCCcEEEecCcceecCCCCceeEEE--EeC-hHHHHHHHHHHHH---HhCCCCCHHHHHHHHcCCCc
Confidence                 11    1 123478889999999889986 666  454 4433333222221   12223344444444433332


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-c-----------ccCCceeEEec-CCCHHHH---HHhHhh
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-H-----------IIKQIGMFTFT-GLNSEQV---AFMTKE  371 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~-----------~~~~~~~~~~~-~~~~~~~---~~~l~~  371 (407)
                                +..+.++.+++.+.+.+.|++.+.   +. +           ....+|++.|. .-+.+..   ...|+.
T Consensus       257 ----------l~~r~~~~~~~a~~la~~L~~~p~---v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~  323 (386)
T PRK06767        257 ----------LAVRMDRHCDNAEKIVSFLKNHDA---VEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHF  323 (386)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHcCCC---ccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCc
Confidence                      334556778889999999988753   22 1           12346666654 2122223   233344


Q ss_pred             ccEEEcCCC-------------------------------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          372 YHIYMTSDG-------------------------------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       372 ~gi~~~~gg-------------------------------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      .++.++=||                               |||++-   |+.+.+++-|.++|+.
T Consensus       324 ~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~~  385 (386)
T PRK06767        324 ITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL---ESWEDIVSDLEQALKK  385 (386)
T ss_pred             cEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence            555443332                               888773   8899999999998864

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.89  E-value=3.6e-21  Score=185.59  Aligned_cols=346  Identities=14%  Similarity=0.092  Sum_probs=208.5

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc-cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK-EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++.+++++.+++. ...... .........++.+.+++...+.      .+.+++  
T Consensus        39 d~dG~~ylD~~~g~~~~~lG-h~~p~v~~a~~~q~~-~~~~~~~~~~~~~~~~~la~~L~~~~~~~------~~~v~f--  108 (433)
T PRK08117         39 GVDGKEYLDFTSGIAVANVG-HRHPKVVQAIKEQAD-KLMHGPSGVIYYESILKLAEELAEITPGG------LDCFFF--  108 (433)
T ss_pred             eCCCCEEEECCcchhhccCC-CCCHHHHHHHHHHHH-hccCccccccCCHHHHHHHHHHHHhCCCC------CCEEEE--
Confidence            34578999999997655677 667788888888875 111111 1112233456666666655111      267899  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcC-------------ceeeEEEeecCC--CCC-------
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAG-------------LSVKTYRYYDPA--TRG-------  162 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G-------------~~~~~v~~~~~~--~~~-------  162 (407)
                      ++||++|++.++++.+.+....+|+..+-+|++...... ..+             ..+..+|..+..  ..+       
T Consensus       109 ~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (433)
T PRK08117        109 SNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCF  188 (433)
T ss_pred             eCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHH
Confidence            999999999998877666555678888888877654322 111             012223331110  000       


Q ss_pred             -cChhhHHHHHHc--C-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435          163 -LNFQGLLEDLRA--A-PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM  237 (407)
Q Consensus       163 -~d~~~l~~~i~~--~-~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~  237 (407)
                       -+++++++.+.+  . .+..++++ -......|.+ .+++.+++|.++|++||+++|+||+|.+|+..+.   .+....
T Consensus       189 ~~~~~~l~~~~~~~~~~~~~aavi~-Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~---~~~~~~  264 (433)
T PRK08117        189 LECLRDLESLFKHQVTPEEVAAVII-EPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE---WFAAQT  264 (433)
T ss_pred             HHHHHHHHHHHHhccCCCcEEEEEE-CCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc---chhHhh
Confidence             145666666653  1 23344444 3334444655 6899999999999999999999999998876542   222121


Q ss_pred             HHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHH
Q 015435          238 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLE  317 (407)
Q Consensus       238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  317 (407)
                      +    +...-+.++||.++ +|+++|++  +++ ++    +...+.......+.+.+++++.++.+.|+...        
T Consensus       265 ~----gv~pDi~t~sK~lg-~G~pigav--~~~-~~----i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~--------  324 (433)
T PRK08117        265 F----GVVPDIMTIAKGIA-SGLPLSAV--VAS-KE----LMEQWPLGSHGTTFGGNPVACAAALATLEVIK--------  324 (433)
T ss_pred             c----CCCCCEeehhhhcc-CCCcceeE--EEc-HH----HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH--------
Confidence            1    11122468999999 89999998  455 44    44433333333445778888888888876331        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-------C---HHHHHHhHhhccEEEcCCC------e
Q 015435          318 LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-------N---SEQVAFMTKEYHIYMTSDG------R  381 (407)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~l~~~gi~~~~gg------R  381 (407)
                      .+.+.++++++.+++.+.|+++..........+..|++..+.+       +   ...+.+.+.++||.+.+.|      |
T Consensus       325 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lR  404 (433)
T PRK08117        325 EEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLR  404 (433)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEE
Confidence            1234455666666676666654211001111222233333222       1   2234455566899886632      7


Q ss_pred             EEec-CCCCCChhHHHHHHHHHHHhh
Q 015435          382 ISMA-GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       382 is~~-~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +++. .++++++++++++|.++++++
T Consensus       405 l~p~~~~t~~~i~~~~~~l~~~l~~~  430 (433)
T PRK08117        405 MIPPLTVTKEEIDEGLDILDEALTEY  430 (433)
T ss_pred             EeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            7753 258999999999999998754

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.89  E-value=2.7e-21  Score=185.75  Aligned_cols=331  Identities=17%  Similarity=0.130  Sum_probs=213.5

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      .++++++|+..|.+..+.| ..++.+++++.+++.  .. ...|.+..+..++++.+++...+       .+.+++  ++
T Consensus        47 ~dG~~~lD~~~g~~~~~lG-h~~p~i~~a~~~~~~--~~-~~~~~~~~~~~~la~~L~~~~~~-------~~~v~~--~~  113 (426)
T PRK00062         47 VDGNEYIDYVGSWGPMILG-HAHPEVVEAVIEAAE--KG-LSFGAPTELEVELAELVIELVPS-------IEMVRM--VN  113 (426)
T ss_pred             CCCCEEEEcccchhhhhcC-CCCHHHHHHHHHHHH--hC-CcCCCCCHHHHHHHHHHHHhCCC-------CCEEEE--ec
Confidence            4678999999997655567 567788888888886  22 33345566667777777776521       267999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-Cc------------eee-----EEEeecCCCCCcChhhHH
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-GL------------SVK-----TYRYYDPATRGLNFQGLL  169 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G~------------~~~-----~v~~~~~~~~~~d~~~l~  169 (407)
                      ||++|++.++++......+++|+..+++|+++...+... |.            ..+     .+..  +.   .|++.++
T Consensus       114 sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~d~~~l~  188 (426)
T PRK00062        114 SGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTA--PY---NDLEAVE  188 (426)
T ss_pred             CHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEc--CC---CCHHHHH
Confidence            999999999888766656789999999999986433221 10            000     0111  11   2788888


Q ss_pred             HHHHcC-CCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEE
Q 015435          170 EDLRAA-PSGAIVLLHACAHNPTGVDPT-LEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLV  247 (407)
Q Consensus       170 ~~i~~~-~~~~~v~i~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~  247 (407)
                      +.+.+. .+..++++.+.++| +|.+.+ .+.+++|.++|++||+++|+||+|.++..++    ......+....|    
T Consensus       189 ~~i~~~~~~~aaiivEpv~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~----~~~~~~~~~~pD----  259 (426)
T PRK00062        189 ELFEEYGDEIAAVIVEPVAGN-MGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL----GGAQGYYGVTPD----  259 (426)
T ss_pred             HHHHhCCCcEEEEEEeCCcCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC----ccHHHHhCCCcc----
Confidence            888632 24456666445555 787765 8889999999999999999999999884321    122222211112    


Q ss_pred             EEecCccccccCCCcceeEEeecChhhHHHHHHHHhh---hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          248 AQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL---VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       248 ~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +.++||.++ .|+++|++  +++     +++.+.+..   .....+.+.+++.+.++.+.|+...      +  +...++
T Consensus       260 i~~~gK~l~-~G~p~ga~--~~~-----~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~------~--~~~~~~  323 (426)
T PRK00062        260 LTTLGKIIG-GGLPVGAF--GGR-----REIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLK------E--PGFYEE  323 (426)
T ss_pred             hHhhhhHhh-CCCcceee--eEH-----HHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHh------c--chHHHH
Confidence            357899999 88999998  465     344444431   1122344677888888877776321      1  123344


Q ss_pred             HHHHHHHHHHHHH----hcCCCCCccc-ccCCceeEEec-CC------------CH---HHHHHhHhhccEEEcCCC---
Q 015435          325 IISMRQQLFDALS----ARGTPGDWSH-IIKQIGMFTFT-GL------------NS---EQVAFMTKEYHIYMTSDG---  380 (407)
Q Consensus       325 ~~~~~~~l~~~l~----~~~~~~~~~~-~~~~~~~~~~~-~~------------~~---~~~~~~l~~~gi~~~~gg---  380 (407)
                      ++++.+++.+.|+    +.+    +.. ..+.|.++.+. .-            +.   ..+...+.++||.+.+.+   
T Consensus       324 ~~~~~~~~~~~l~~~~~~~~----~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~  399 (426)
T PRK00062        324 LEALTKRLAEGLKEAAKKAG----IPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEA  399 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHcC----CceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCc
Confidence            4445555555544    334    222 33456555432 10            11   234455556899998865   


Q ss_pred             -eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          381 -RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 -Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                       ++++. ++++++++++++++++++.+
T Consensus       400 ~~~~~~-~t~~ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        400 GFVSAA-HTDEDIEKTLEAARKAFAAL  425 (426)
T ss_pred             eeeecc-CCHHHHHHHHHHHHHHHHhh
Confidence             67755 59999999999999998764

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.89  E-value=4.3e-21  Score=182.67  Aligned_cols=316  Identities=16%  Similarity=0.151  Sum_probs=199.3

Q ss_pred             cccchhHHHHHHHHhccccc--cccCCC----CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH
Q 015435           48 PLVLNVVRKAEQLLVNDQSR--VKEYLP----IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA  121 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~--~~~y~~----~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~  121 (407)
                      |.|..+.+++.+.+......  ...|..    ..++.++++.+++++ +..    ..++|++  |+|+++++..++  ..
T Consensus        11 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~----~~~~v~~--~~g~t~al~~~~--~~   81 (376)
T TIGR01977        11 PKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLF-NAP----SSAHVVF--TNNATTALNIAL--KG   81 (376)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHh-CcC----CCCeEEE--eCCHHHHHHHHH--Hh
Confidence            44556666666665411111  112322    245778999999988 431    1258999  999999999884  44


Q ss_pred             hhcCCCeEEecCCCCCChHH----HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCH
Q 015435          122 RHYHQLTIYIPQPTWGNHPK----VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTL  197 (407)
Q Consensus       122 ~~~~gd~Vi~~~p~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~  197 (407)
                      .+.+||+|+++.++|..+..    ..+..|.+++.++.+  .++.+|++++++.+.  ++++++++ ++|+||||.+++ 
T Consensus        82 ~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~--~~~~~v~~-~~~~n~tG~~~~-  155 (376)
T TIGR01977        82 LLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCD--NEGLISPERIKRAIK--TNTKLIVV-SHASNVTGTILP-  155 (376)
T ss_pred             ccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecC--CCCCcCHHHHHHhcC--CCCeEEEE-ECCCCCccccCC-
Confidence            57799999999999887654    334569999999883  346789999999986  55677666 899999999887 


Q ss_pred             HHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHH
Q 015435          198 EQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASR  277 (407)
Q Consensus       198 ~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~  277 (407)
                        +++|.++|+++|+++|+|++++..... .  +   +    ......+++.|.+|.++.|. .+|.+  +..+......
T Consensus       156 --~~~i~~l~~~~~~~livD~a~~~g~~~-~--~---~----~~~~~D~~~~s~~K~l~~p~-g~g~l--~~~~~~~~~~  220 (376)
T TIGR01977       156 --IEEIGELAQENGIFFILDAAQTAGVIP-I--D---M----TELAIDMLAFTGHKGLLGPQ-GTGGL--YIREGIKLKP  220 (376)
T ss_pred             --HHHHHHHHHHcCCEEEEEhhhccCccC-C--C---c----hhcCCCEEEecccccccCCC-CceEE--EEcCCcCcCc
Confidence              567788899999999999997533321 1  1   1    11234588889999876432 35666  3443321000


Q ss_pred             HHHH---Hhh--------h-hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 015435          278 VESQ---LKL--------V-IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDW  345 (407)
Q Consensus       278 ~~~~---~~~--------~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  345 (407)
                      +...   ...        . .+....+++.....++..+++...     +...+..+++.+++.+++.+.+++.+.   +
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~-----~~g~~~~~~~~~~l~~~~~~~l~~~~~---~  292 (376)
T TIGR01977       221 LKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIE-----KIGIANIAKKECMLTEKLLNGLREINK---V  292 (376)
T ss_pred             eecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHhcCCC---e
Confidence            0000   000        0 001112344444444444443110     123567778888999999999987642   4


Q ss_pred             ccccC-----CceeEEe--cCCCHHHHHHhHhhc-cEEEcCC----------------C--eEEecC-CCCCChhHHHHH
Q 015435          346 SHIIK-----QIGMFTF--TGLNSEQVAFMTKEY-HIYMTSD----------------G--RISMAG-LSSKTVPHLTDA  398 (407)
Q Consensus       346 ~~~~~-----~~~~~~~--~~~~~~~~~~~l~~~-gi~~~~g----------------g--Ris~~~-~~~e~i~~~~~~  398 (407)
                      ....+     .++...+  .+.+.+.+...|.+. ||.+.+|                +  |+++.. .+++|+++++++
T Consensus       293 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~  372 (376)
T TIGR01977       293 KIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEA  372 (376)
T ss_pred             EEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHH
Confidence            43322     2333322  245666666655554 8888553                2  898765 577999999999


Q ss_pred             HHH
Q 015435          399 IHA  401 (407)
Q Consensus       399 l~~  401 (407)
                      |++
T Consensus       373 l~~  375 (376)
T TIGR01977       373 LSE  375 (376)
T ss_pred             Hhh
Confidence            875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.89  E-value=1.6e-20  Score=177.36  Aligned_cols=278  Identities=15%  Similarity=0.115  Sum_probs=189.6

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~  148 (407)
                      +......|+++++++. +.       +++++  ++||++++.+++  ...+.+||+|++++|+|......+.    ..|.
T Consensus        50 ~~pt~~~L~~~lA~l~-g~-------~~~i~--~~sg~~Ai~~~l--~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi  117 (386)
T PRK08045         50 GNPTRDVVQRALAELE-GG-------AGAVL--TNTGMSAIHLVT--TVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY  117 (386)
T ss_pred             CCccHHHHHHHHHHHh-CC-------CeEEE--ECCHHHHHHHHH--HHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe
Confidence            4556889999999987 42       46888  999999999984  4557899999999999996554433    2344


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      ++..++       ..|++++++.+.  ++++++++ ++|+||||.+++   +++|+++|+++|+++|+|++|....... 
T Consensus       118 ~v~~vd-------~~d~e~l~~~l~--~~tklV~l-~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~~~-  183 (386)
T PRK08045        118 RVLFVD-------QGDEQALRAALA--EKPKLVLV-ESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPALQN-  183 (386)
T ss_pred             EEEEeC-------CCCHHHHHHhcc--cCCeEEEE-ECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            555442       258899999887  56778777 899999999886   6777888999999999999997654321 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCcccc-ccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMG-LYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                           ++    ..+ ..++++|++|.++ .++.+.|++  ++.++++.++    +.........+.+++.+..+...|+.
T Consensus       184 -----pl----~~g-aDivv~S~tK~l~G~~d~~~G~v--i~~~~~~~~~----l~~~~~~~g~~~~p~~~~l~~rgl~t  247 (386)
T PRK08045        184 -----PL----ALG-ADLVLHSCTKYLNGHSDVVAGVV--IAKDPDVVTE----LAWWANNIGVTGGAFDSYLLLRGLRT  247 (386)
T ss_pred             -----ch----hhC-CCEEEeecceeccCCCCceeEEE--EeCcHHHHHH----HHHHHHhcCCCCCHHHHHHHHhhhcc
Confidence                 11    111 2388999999986 455678888  5766654443    44344444556777777777766664


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCC-----ccc----ccCCceeEEec-CCCHHHHHHhHhh
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGT------PGD-----WSH----IIKQIGMFTFT-GLNSEQVAFMTKE  371 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~-----~~~----~~~~~~~~~~~-~~~~~~~~~~l~~  371 (407)
                                +..+.++..+++..+.+.|++.+.      |..     ...    ...-||++.+. +-+.+.+.+++++
T Consensus       248 ----------l~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~  317 (386)
T PRK08045        248 ----------LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGG  317 (386)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHh
Confidence                      446667778888899999887642      110     000    11235666544 2234445555554


Q ss_pred             ccEEE-c--CC-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          372 YHIYM-T--SD-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       372 ~gi~~-~--~g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      -.+.. .  =|                             |  |+|++-   |+.+.+++-|.++|+.
T Consensus       318 l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~  382 (386)
T PRK08045        318 LSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRA  382 (386)
T ss_pred             ccceeEeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHHHHH
Confidence            44331 1  11                             1  888873   7899999999998874

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.89  E-value=1.4e-20  Score=178.48  Aligned_cols=280  Identities=17%  Similarity=0.147  Sum_probs=184.7

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCce
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGLS  149 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~~  149 (407)
                      .....+|++.++++. +.       +..++  ++||++++.+++  ...+.+||+|+++.|.|.....    .+...|++
T Consensus        58 ~p~~~~le~~lA~l~-g~-------~~av~--~~sG~~Ai~~~l--~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~  125 (391)
T TIGR01328        58 NPTVSNLEGRIAFLE-GT-------EAAVA--TSSGMGAIAATL--LTILKAGDHLISDECLYGCTFALLEHALTKFGIQ  125 (391)
T ss_pred             CchHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeE
Confidence            345778999999988 53       45677  899999998874  4457899999999998875443    34568888


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                      ++.++..       |++++++.+.  +++++|++ ++|+||||.+.+   +++|+++|+++|+++|+|++|.......  
T Consensus       126 ~~~vd~~-------d~e~l~~~i~--~~tklV~l-e~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~--  190 (391)
T TIGR01328       126 VDFINMA-------IPEEVKAHIK--DNTKIVYF-ETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPMLTN--  190 (391)
T ss_pred             EEEECCC-------CHHHHHHhhc--cCCeEEEE-ECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhccCC--
Confidence            8888651       7889999887  56777777 899999999775   7788888999999999999987544321  


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                          +   + . ....++++|+||.++.+|.++|++  ++.++++.+++......  .......+...+..+...++.  
T Consensus       191 ----~---~-~-~g~Divv~S~sK~lgg~g~~~gG~--v~~~~~li~~l~~~~~~--~~~g~~l~~~~a~l~l~~L~t--  255 (391)
T TIGR01328       191 ----P---V-A-LGVDVVVHSATKYIGGHGDVVAGL--ICGKAELLQQIRMVGIK--DMTGSVISPFDAWLILRGLKT--  255 (391)
T ss_pred             ----c---h-h-cCCCEEEccccccccCCCCceEEE--EEcCHHHHHHHHHHHHH--hCCCCCCCcHHHHHHHhCcCc--
Confidence                1   1 1 123488899999999999886555  35666655544331111  111223344344444433332  


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCcc---------cccCCceeEEec-CCCHHHHHHhHhhcc
Q 015435          310 MYKEWTLELKAMADRIISMRQQLFDALSARGT------PGDWS---------HIIKQIGMFTFT-GLNSEQVAFMTKEYH  373 (407)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~l~~~g  373 (407)
                              +....++..++.+.+.+.|++.+.      |..-+         .....||++.+. +-+.+.+.++++.-.
T Consensus       256 --------l~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~  327 (391)
T TIGR01328       256 --------LNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLK  327 (391)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCC
Confidence                    344556677788888888887542      11000         011236676654 223444555555544


Q ss_pred             EEE-cC--C-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          374 IYM-TS--D-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       374 i~~-~~--g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.. .+  |                             |  |||++-   |+.+.+++-|.++|+.+
T Consensus       328 ~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~~  391 (391)
T TIGR01328       328 LIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL---EDADDLIADLKQALDAL  391 (391)
T ss_pred             cceEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHHHhhC
Confidence            432 11  1                             1  888773   88999999999998764

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.89  E-value=1.1e-20  Score=178.42  Aligned_cols=278  Identities=15%  Similarity=0.114  Sum_probs=184.5

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~  148 (407)
                      +......+++.++++. +.       +++++  ++|+++++.+++  ...+.+||+|+++.|+|......+.    ..|.
T Consensus        49 ~~p~~~~le~~lA~l~-g~-------~~v~~--~~gg~~Ai~~~l--~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~  116 (382)
T TIGR02080        49 GNPTRDLLQQALAELE-GG-------AGAVV--TNTGMSAIHLVT--TALLGPDDLLVAPHDCYGGTYRLLNALAKKGCF  116 (382)
T ss_pred             CCchHHHHHHHHHHHh-CC-------CcEEE--EcCHHHHHHHHH--HHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCe
Confidence            4556788999999987 42       67888  999999999984  4457899999999999987655443    2244


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      ++..++       ..|++++++++.  ++++++++ ++|+||||.+++   +++|+++|+++|+++|+|++|..+.... 
T Consensus       117 ~v~~~d-------~~d~~~l~~ai~--~~tklV~l-~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~-  182 (382)
T TIGR02080       117 RVLFVD-------QGDEQALRAALA--QKPKLVLI-ETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQN-  182 (382)
T ss_pred             EEEEEC-------CCCHHHHHHhcC--cCceEEEE-ECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            444432       147899999887  56777777 899999999886   6678888999999999999997654321 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCcccc-ccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMG-LYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                           ++. +    ...++++|+||.++ .++++.|++  ++.++++.+++    .........+.+++.+..+...++ 
T Consensus       183 -----pl~-~----gaDivv~S~sK~l~G~~~~~~G~i--~~~~~~~~~~l----~~~~~~~g~~~sp~~a~l~lr~l~-  245 (382)
T TIGR02080       183 -----PLA-L----GADLVLHSCTKYLNGHSDVIAGAV--IAKDPQVAEEL----AWWANNLGVTGGAFDSYLTLRGLR-  245 (382)
T ss_pred             -----chh-h----CCCEEEeecceeccCCCCceeEEE--EeCCHHHHHHH----HHHHHccCCCCCHHHHHHHHcccc-
Confidence                 111 1    12488899999986 467889998  57666654443    333333344556655555543333 


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCC-----ccc----ccCCceeEEec-CCCHHHHHHhHhh
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGT------PGD-----WSH----IIKQIGMFTFT-GLNSEQVAFMTKE  371 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~-----~~~----~~~~~~~~~~~-~~~~~~~~~~l~~  371 (407)
                               .+..+.++..++...+.++|++.+.      |..     .+.    ...-||++.+. .-+.+.+..+++.
T Consensus       246 ---------tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~  316 (382)
T TIGR02080       246 ---------TLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGG  316 (382)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHc
Confidence                     3444566777888888888886542      110     000    01235666554 2233444444444


Q ss_pred             ccE---EEcCC-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          372 YHI---YMTSD-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       372 ~gi---~~~~g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      -.+   .++=|                             |  |||++-   |+.+.+++-|.++|+.
T Consensus       317 l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl---E~~~dl~~dl~~al~~  381 (382)
T TIGR02080       317 LSLFTLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGL---EDADDLIADLEQGLRA  381 (382)
T ss_pred             CCcceEeccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence            333   21111                             1  888873   8899999999998864

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.89  E-value=4.6e-21  Score=183.32  Aligned_cols=344  Identities=13%  Similarity=0.127  Sum_probs=213.7

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++.+++++.+++. ..... ..+.+.....++.+.+++...+.     ..+.+++  
T Consensus        36 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~-~l~~~~~~~~~~~~~~~la~~l~~~~p~~-----~~~~v~f--  106 (425)
T PRK07495         36 DKEGRRYIDFAAGIAVVNTG-HRHPRVIAAVKAQLD-RFTHTCHQVVPYENYVRLAERLNALVPGD-----FAKKTIF--  106 (425)
T ss_pred             eCCCCEEEEccccHHhhccC-CCCHHHHHHHHHHHh-hccCcccCccCCHHHHHHHHHHHHhCCCC-----CCCEEEE--
Confidence            45678999999997655667 667788888888876 11111 11223333445566666554110     0157999  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhh-cC-------------ceeeEEEeecCCCCCcC----hhh
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTL-AG-------------LSVKTYRYYDPATRGLN----FQG  167 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~-~G-------------~~~~~v~~~~~~~~~~d----~~~  167 (407)
                      ++||++|++.++++.+......+|+...-+|++....... .|             ..+..+|..+.. .+.+    +++
T Consensus       107 ~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~  185 (425)
T PRK07495        107 VTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVEQSLAA  185 (425)
T ss_pred             CCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-ccccHHHHHHH
Confidence            9999999999998887765556888888888776432211 11             022334432111 1222    344


Q ss_pred             HHHHHHc---CCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          168 LLEDLRA---APSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       168 l~~~i~~---~~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      +++.+.+   ..+..++++.+..+| +|. .++.+.+++|.++|++||+++|+||++.+|...+.   .+....    .+
T Consensus       186 l~~~~~~~~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~---~~a~~~----~g  257 (425)
T PRK07495        186 LDKLFKADVDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK---LFAMEH----HE  257 (425)
T ss_pred             HHHHHHhccCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC---ceeecc----cC
Confidence            5666542   134567777666666 774 58999999999999999999999999998876542   222111    12


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ...-+.++||.++ +|+|+|++  +++     +++.+.+.......+++.+++++.++.+.++-..        -..+.+
T Consensus       258 v~pDi~tlsK~l~-~G~pigav--~~~-----~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~--------~~~l~~  321 (425)
T PRK07495        258 VAADLTTMAKGLA-GGFPLAAV--TGR-----AEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIE--------EEDLCE  321 (425)
T ss_pred             CCCCEEeehhhhc-CCccceEE--EEc-----HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHH--------hchHHH
Confidence            2334678999998 89999999  565     4455544433334455778888887666654221        113445


Q ss_pred             HHHHHHHHHHHHHHhcC--CCCCcccccCCceeEEecCCC-----------HHHHHHhHhhccEEEcCC---C---eEEe
Q 015435          324 RIISMRQQLFDALSARG--TPGDWSHIIKQIGMFTFTGLN-----------SEQVAFMTKEYHIYMTSD---G---RISM  384 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~gi~~~~g---g---Ris~  384 (407)
                      +++++.+++.+.|+++-  .+. +..+.. -|++.|+.+.           ...+...+.++|+.+.+.   +   ||..
T Consensus       322 ~~~~~g~~l~~~L~~l~~~~~~-i~~vrG-~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~P  399 (425)
T PRK07495        322 RANQLGNRLKQRLASLRETVPE-IADIRG-PGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLA  399 (425)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCC-eeeeec-CceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeC
Confidence            55556666666665431  110 111222 2677776441           122444455689998663   2   6654


Q ss_pred             cC-CCCCChhHHHHHHHHHHHhh
Q 015435          385 AG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       385 ~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .- ++++++++++++|.++++++
T Consensus       400 pl~it~~~id~~~~~l~~~l~~~  422 (425)
T PRK07495        400 PITIQDDVFAEALDILEASILEA  422 (425)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHH
Confidence            32 58899999999999999764

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.89  E-value=3e-21  Score=187.58  Aligned_cols=267  Identities=13%  Similarity=0.108  Sum_probs=170.9

Q ss_pred             CCceEEeecCCcccHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhh----cCceeeEEEeecCCCCCcChhhHHHHH
Q 015435           98 DNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTL----AGLSVKTYRYYDPATRGLNFQGLLEDL  172 (407)
Q Consensus        98 ~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~i  172 (407)
                      .+++.+  |+|+|++++.+.  .+. ..+||+|+++++.|+.+...++.    .|.+++.++..  ++ .+|++++++.+
T Consensus       129 ~~~v~~--~~g~t~~~~~~~--~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~--~~-~~d~~~l~~~i  201 (447)
T PRK00451        129 VANASM--YDGATALAEAAL--MAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYE--DG-VTDLEALEAAV  201 (447)
T ss_pred             cceEEe--cCcHHHHHHHHH--HHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCC--CC-CCCHHHHHHhc
Confidence            468889  999999998874  333 36899999999999999887764    69999999983  34 79999999998


Q ss_pred             HcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeee--ccccccccCCCCCchhHHHHHHHHcCCcEEEEE-
Q 015435          173 RAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF--DSAYQGFASGSLDADAQSVRMFVADGGECLVAQ-  249 (407)
Q Consensus       173 ~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~--D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-  249 (407)
                      +  ++++++++ ++| ||||.+.   ++++|+++|+++|+++++  |.+..++...            ....+..+++. 
T Consensus       202 ~--~~t~~v~l-~~p-n~tG~v~---~l~~I~~~a~~~~~~~iv~~d~~~~g~~~~------------~~~~~~D~~~~s  262 (447)
T PRK00451        202 D--DDTAAVVV-QYP-NFFGVIE---DLEEIAEIAHAGGALFIVGVDPVSLGLLKP------------PGEYGADIVVGE  262 (447)
T ss_pred             C--CCeEEEEE-ECC-CCCCeeC---CHHHHHHHHHHCCCEEEEEcChHHhccCCC------------cccCCCCEEEEC
Confidence            7  56777777 678 8999964   588889999999999988  5432211100            01112234444 


Q ss_pred             --ecCccccccCCCcceeEEeecChhhHHHHHHH------------------------HhhhhhcccCCCChhHH-HHHH
Q 015435          250 --SYAKNMGLYGERVGALSIVCKTEDVASRVESQ------------------------LKLVIRPMYSSPPIHGA-SIVA  302 (407)
Q Consensus       250 --s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~-~~~~  302 (407)
                        +|||.+.++|+|+||+  +++ +++.+.+...                        .+........+.+...+ .++.
T Consensus       263 ~~k~~~~~~~~Gpg~G~l--~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa  339 (447)
T PRK00451        263 GQPLGIPLSFGGPYLGFF--ATR-KKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAA  339 (447)
T ss_pred             CCcCCCCCCCCCCCchHH--Hhh-HHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHH
Confidence              7888888889999998  454 3333321000                        01111111112222222 2222


Q ss_pred             HHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEe--cC--CCHHHHHHhHhhccEEE--
Q 015435          303 TILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTF--TG--LNSEQVAFMTKEYHIYM--  376 (407)
Q Consensus       303 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~~gi~~--  376 (407)
                      ..+....     ...+++.++++.++++++.+.|++.+.   +.+.  .+.+|.+  +.  .+.+.+.+.|.++||..  
T Consensus       340 ~~l~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~~g---~~~~--~~~~~~~~~v~~~~~~~~~~~~L~~~gi~~~~  409 (447)
T PRK00451        340 IYMSLLG-----PEGLRELAEQNHQKAHYLAERLAEIGG---VELF--DGPFFNEFVVRLPKPAEEVNEALLEKGILGGY  409 (447)
T ss_pred             HHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHhhcCC---EEec--CCCeEEEEEEecCCCHHHHHHHHHhcCCCCCc
Confidence            2222110     145778889999999999999998753   5544  3344433  33  34444444444466542  


Q ss_pred             --cCC-----C--eEEecC-CCCCChhHHHHHHHHHH
Q 015435          377 --TSD-----G--RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       377 --~~g-----g--Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                        .+.     +  |+++.. .++++++++++.|++++
T Consensus       410 ~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        410 DLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             ccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence              111     2  888863 47899999999998764

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.89  E-value=8.6e-21  Score=175.40  Aligned_cols=325  Identities=15%  Similarity=0.120  Sum_probs=219.8

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc----ccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS----RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      +++++||++..+   .|....+.+++++.+.+.....    ...-++...-+.+|.+.+|+|+ +.       +..++  
T Consensus        38 ~~~~~nf~SNdY---LGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~-g~-------e~al~--  104 (388)
T COG0156          38 GRKVLNFCSNDY---LGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL-GA-------EAALL--  104 (388)
T ss_pred             CceeEeeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh-CC-------CcEEE--
Confidence            578999999988   6766677888888888862111    1111223334788999999988 65       45555  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC-C--CcEEE
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP-S--GAIVL  182 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~--~~~v~  182 (407)
                      .++|=.|+..+  +...++++|.|+.....|.+..+.++..+++++.++.       .|++.|++.+.+.+ .  ++.++
T Consensus       105 f~SGy~AN~~~--i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~I  175 (388)
T COG0156         105 FSSGFVANLGL--LSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLI  175 (388)
T ss_pred             EcccchhHHHH--HHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEE
Confidence            56666666666  3455778899999999999999999999999999976       37788888887421 1  24445


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH-HHHHH-cCCcEEEEEecCccccccCC
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV-RMFVA-DGGECLVAQSYAKNMGLYGE  260 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~-~~~~~-~~~~~i~~~s~sK~~~~~G~  260 (407)
                      ++...-.-.|.+   .+|++|++++++|+.+|++||+|+-..+++.   ...+ ..+.- ..+..|+++||||++|..| 
T Consensus       176 vtegVfSMdGdi---ApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~---GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G-  248 (388)
T COG0156         176 VTEGVFSMDGDI---APLPELVELAEKYGALLYVDEAHAVGVLGPN---GRGLAEHFGLEPEEVDIIVGTLGKALGSSG-  248 (388)
T ss_pred             EEeccccCCCCc---CCHHHHHHHHHHhCcEEEEEccccccccCCC---CccHHHHhCCCCccceEEEEEchhhhcccC-
Confidence            545555556774   4699999999999999999999987777632   1222 12222 2455899999999999766 


Q ss_pred             CcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          261 RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       261 r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                        |++   +.+..+.+.++...+.+..  +.+.|+....++...++..       +.....+++++++..++.+.+...+
T Consensus       249 --g~v---~g~~~~~d~L~~~ar~~if--StalpP~~aaa~~~al~~l-------~~~~~~r~~L~~~~~~~~~~~~~~~  314 (388)
T COG0156         249 --GYI---AGSAALIDYLRNRARPFIF--STALPPAVAAAALAALRIL-------EEGPERRERLQELAAFFRSLLKALG  314 (388)
T ss_pred             --cee---eCcHHHHHHHHHhCCceec--cCCCCHHHHHHHHHHHHHH-------HhCHHHHHHHHHHHHHHHHHHHhcC
Confidence              676   6666666666554444432  2244444444555555533       2345778888899999997777767


Q ss_pred             CCCCcccccCCceeEEec-CC---CHHHHHHhHhhccEEEcCC-------C----eEEecC-CCCCChhHHHHHHHHH
Q 015435          341 TPGDWSHIIKQIGMFTFT-GL---NSEQVAFMTKEYHIYMTSD-------G----RISMAG-LSSKTVPHLTDAIHAA  402 (407)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~l~~~gi~~~~g-------g----Ris~~~-~~~e~i~~~~~~l~~~  402 (407)
                          +........+..++ +-   ..+....++++ ||.+.+.       |    |+++.. +++++|+++++.+.++
T Consensus       315 ----~~~~~s~s~I~pv~~gd~~~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         315 ----LVLLPSESPIIPVILGDEERALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             ----CccCCCCCCeeeeEeCCHHHHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence                44434444444333 33   22334566665 9998654       3    788764 6889999999888764

>PRK07505 hypothetical protein; Provisional

Probab=99.89  E-value=8.6e-21  Score=181.70  Aligned_cols=327  Identities=14%  Similarity=0.103  Sum_probs=189.2

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC-----CCCCCcHHHHHHHHHHHhCCCCCCCCCCceE
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY-----LPIVGLVDFNKLSAKLILGADSPAIKDNRVT  102 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-----~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~  102 (407)
                      ..+..++||+...+   .|...++++++++.+++. ........     .......++++.+++++ +.        +.+
T Consensus        43 ~~g~~~ld~~s~~~---lgl~~~p~v~~A~~~~l~-~~g~~~~~~~~~~~~~~~~~~l~~~la~~~-~~--------~~~  109 (402)
T PRK07505         43 ADGHTFVNFVSCSY---LGLDTHPAIIEGAVDALK-RTGSLHLSSSRTRVRSQILKDLEEALSELF-GA--------SVL  109 (402)
T ss_pred             cCCceEEEeecCCc---cCCCCCHHHHHHHHHHHH-HhCCCCCCccchhhhhHHHHHHHHHHHHHh-CC--------CEE
Confidence            35688999987543   453446677777777775 11101111     11224566777777766 31        345


Q ss_pred             EeecCCcccHHHHHHHHHHh-h-cCCC-eEEecCCCCCChH---HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC
Q 015435          103 TVQCLSGTGSLRVGAEFLAR-H-YHQL-TIYIPQPTWGNHP---KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP  176 (407)
Q Consensus       103 ~~~t~g~t~a~~~~~~~~~~-~-~~gd-~Vi~~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~  176 (407)
                      +  +++|+++.+.++++... . .+|+ .|++.+..|++-.   ......+.+++.+|.       .|++++++++.  +
T Consensus       110 ~--~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~--~  178 (402)
T PRK07505        110 T--FTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICK--T  178 (402)
T ss_pred             E--ECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHh--c
Confidence            4  55677788877655432 1 2233 3667776554321   112223556666654       37889999886  4


Q ss_pred             CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH-cCCcEEEEEecCccc
Q 015435          177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA-DGGECLVAQSYAKNM  255 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~  255 (407)
                      ++.++++ ++|+||||.+.+   +++|.++|++||++||+||+|....++. .........+.. ..+.+++++|+||.+
T Consensus       179 ~~~~~vl-~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~-~g~~~~~~~~~~~~~d~~i~~~s~sK~~  253 (402)
T PRK07505        179 NKTVAYV-ADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGK-NGEGYVRSELDYRLNERTIIAASLGKAF  253 (402)
T ss_pred             CCCEEEE-EecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCC-CCCchHHHHcCCCCCCCeEEEEechhhh
Confidence            4566666 789999999887   6777788999999999999985433321 111222222322 357789999999999


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccC--CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYS--SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLF  333 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (407)
                      +.+|   ||+  +++++++.+.+.    .....+++  +++..++.++...++-..     ++.+.+.+++++++.+.+.
T Consensus       254 ~~~G---g~~--~~~~~~~~~~~~----~~~~~~t~~~~~~~~a~aa~~a~l~~~~-----~~~~~~~~~~l~~~~~~~~  319 (402)
T PRK07505        254 GASG---GVI--MLGDAEQIELIL----RYAGPLAFSQSLNVAALGAILASAEIHL-----SEELDQLQQKLQNNIALFD  319 (402)
T ss_pred             hccC---eEE--EeCCHHHHHHHH----HhCCCceeCCCCCHHHHHHHHHHHHHHh-----ccCcHHHHHHHHHHHHHHH
Confidence            9775   787  456665444443    33332222  344556666665554110     0123334445555554443


Q ss_pred             HHHHhcCCCCCcccccCCceeEEec--CC--CHHHHHHhHhhccEEEcCC-------C----eEEecC-CCCCChhHHHH
Q 015435          334 DALSARGTPGDWSHIIKQIGMFTFT--GL--NSEQVAFMTKEYHIYMTSD-------G----RISMAG-LSSKTVPHLTD  397 (407)
Q Consensus       334 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~l~~~gi~~~~g-------g----Ris~~~-~~~e~i~~~~~  397 (407)
                      +.+....        ...+.++.++  +-  ....+.+.|.++||.+.+.       +    ||++.. +++++++++++
T Consensus       320 ~~~~~~~--------~g~~~~i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~  391 (402)
T PRK07505        320 SLIPTEQ--------SGSFLPIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCS  391 (402)
T ss_pred             HHHHhcC--------CCCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHH
Confidence            3221110        1111111122  11  1233444445689998753       2    888763 48899999999


Q ss_pred             HHHHHHHh
Q 015435          398 AIHAAVTR  405 (407)
Q Consensus       398 ~l~~~l~~  405 (407)
                      +|++++++
T Consensus       392 ~l~~~l~~  399 (402)
T PRK07505        392 LLKEILDE  399 (402)
T ss_pred             HHHHHHHh
Confidence            99998864

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.89  E-value=1.3e-20  Score=178.00  Aligned_cols=276  Identities=17%  Similarity=0.157  Sum_probs=189.3

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~  148 (407)
                      +.....++++.++++. +.       ++.++  ++||++|+..++  ...+.+||+|+++.+.|......    +...|+
T Consensus        38 ~~p~~~~le~~la~l~-g~-------~~a~~--~~sG~~Ai~~~l--~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~  105 (369)
T cd00614          38 GNPTVDALEKKLAALE-GG-------EAALA--FSSGMAAISTVL--LALLKAGDHVVASDDLYGGTYRLFERLLPKLGI  105 (369)
T ss_pred             CChhHHHHHHHHHHHH-CC-------CCEEE--EcCHHHHHHHHH--HHHcCCCCEEEECCCCcchHHHHHHHHHhhcCe
Confidence            4556888999999987 53       56778  899999999984  44578999999999999887654    346788


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++.       -|++++++++.  ++++++++ .+|+||||.+.+   +++|+++|++||+++|+|++|....... 
T Consensus       106 ~~~~v~~-------~d~~~l~~~i~--~~~~~v~~-e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~~-  171 (369)
T cd00614         106 EVTFVDP-------DDPEALEAAIK--PETKLVYV-ESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQR-  171 (369)
T ss_pred             EEEEeCC-------CCHHHHHHhcC--CCCeEEEE-ECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcCC-
Confidence            8888765       15888998886  56777777 899999999775   7788889999999999999986544311 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                           +   + . ....+++.|+||.++.+| .+.|++  +++++++.+++.    ..........+...+.++...++.
T Consensus       172 -----~---~-~-~g~Divv~S~tK~l~g~~~~~gG~v--~~~~~~l~~~l~----~~~~~~g~~~~p~~a~~~l~~l~t  235 (369)
T cd00614         172 -----P---L-E-LGADIVVHSATKYIGGHSDVIAGVV--VGSGEALIQRLR----FLRLALGTILSPFDAWLLLRGLKT  235 (369)
T ss_pred             -----h---h-h-hCCcEEEeccceeccCCCCceEEEE--EeCcHHHHHHHH----HHHHhhCCCCCHHHHHHHHcCCCC
Confidence                 1   1 1 134688999999998766 678888  565435444443    333333335555555555444432


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---------------ccCCceeEEec-CCCHHHHHHhHhh
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH---------------IIKQIGMFTFT-GLNSEQVAFMTKE  371 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~l~~  371 (407)
                                +..+.++..++...+.+.|++.+.-..+.+               ....++++.+. +-+.+.+..+++.
T Consensus       236 ----------l~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~  305 (369)
T cd00614         236 ----------LPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNA  305 (369)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHc
Confidence                      334556777888999999988752000001               12246666654 2255666666666


Q ss_pred             ccEEE-cC--C-------------------------C------eEEecCCCCCChhHHHHHHHHHH
Q 015435          372 YHIYM-TS--D-------------------------G------RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       372 ~gi~~-~~--g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      ..+.. .+  |                         |      |+|++-   |+.+.+++.|.+++
T Consensus       306 l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl---E~~~dl~~dl~~al  368 (369)
T cd00614         306 LKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI---EDVEDLIADLEQAL  368 (369)
T ss_pred             CCcceEcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHhh
Confidence            55542 10  1                         1      888883   88999999998876

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.89  E-value=6.6e-21  Score=179.29  Aligned_cols=275  Identities=13%  Similarity=0.056  Sum_probs=186.7

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~  148 (407)
                      +......|+++++++. +        ++.++  +++|++++..++  ...+.+||+|++++|+|..+...+    ...|+
T Consensus        49 ~~p~~~~Le~~lA~l~-~--------~~~v~--~~sG~~Ai~~~l--~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~  115 (366)
T PRK07582         49 SNPTWRALEAALGELE-G--------AEALV--FPSGMAAITAVL--RALLRPGDTVVVPADGYYQVRALAREYLAPLGV  115 (366)
T ss_pred             CCccHHHHHHHHHHHc-C--------CCEEE--ECCHHHHHHHHH--HHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE
Confidence            6678899999999987 3        45666  777788998874  455789999999999998887654    45799


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++..+.      .+    .+.  ++++++++ ++|+||||.+.   ++++|+++|+++|+++|+|++|.....  .
T Consensus       116 ~v~~v~~~~~------~~----~~~--~~t~lV~l-e~p~NPtg~v~---di~~I~~~a~~~g~~lvVD~t~~~~~~--~  177 (366)
T PRK07582        116 TVREAPTAGM------AE----AAL--AGADLVLA-ETPSNPGLDVC---DLAALAAAAHAAGALLVVDNTTATPLG--Q  177 (366)
T ss_pred             EEEEECCCCh------HH----Hhc--cCceEEEE-ECCCCCCCCcc---CHHHHHHHHHHcCCEEEEECCCCCccc--c
Confidence            9998876311      11    222  46777777 89999999754   689999999999999999999853221  1


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCcccc-ccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMG-LYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                          .++    +. ...++++|+||.++ .+|+|+||+  +++++++.+++    ..........++...+..+...++.
T Consensus       178 ----~p~----~~-g~Divv~S~sK~l~G~~g~~~G~v--~~~~~~l~~~l----~~~~~~~g~~~~~~~a~l~~r~l~t  242 (366)
T PRK07582        178 ----RPL----EL-GADLVVASDTKALTGHSDLLLGYV--AGRDPELMAAV----ERWRLLAGAIPGPFEAWLAHRSLGT  242 (366)
T ss_pred             ----Cch----hc-CCcEEEecccccccCCCCeeEEEE--EcCcHHHHHHH----HHHHHHhCCCCCHHHHHHHHhcccc
Confidence                111    11 12378899999984 467899999  56666544443    3333333445666666666655553


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc----c-----------CCceeEEecCCCHHHHHHhHhhc
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI----I-----------KQIGMFTFTGLNSEQVAFMTKEY  372 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~l~~~  372 (407)
                      .          ....++..++...+.+.|++.+.-..+.+.    .           ..||++.|.--+.+.+.+.+++.
T Consensus       243 l----------~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~~~~~~~~~~l  312 (366)
T PRK07582        243 L----------GLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAAS  312 (366)
T ss_pred             H----------HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCCHHHHHHHHHhC
Confidence            3          344466667888888888876521001110    1           14677765422666677777777


Q ss_pred             cEEEc-C--C------------------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          373 HIYMT-S--D------------------G--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       373 gi~~~-~--g------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++... +  |                  +  |+|++-   |+.+.+++.|.++|+.+
T Consensus       313 ~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGl---E~~~dli~dl~~al~~~  366 (366)
T PRK07582        313 RLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGI---EDTDDLVADLERALDAL  366 (366)
T ss_pred             CcceecccCCCccchhhhHHHcCCCCCCCeEEEEecc---CCHHHHHHHHHHHHhhC
Confidence            76543 1  1                  2  888774   78899999999988764

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.89  E-value=1.9e-20  Score=177.88  Aligned_cols=276  Identities=16%  Similarity=0.140  Sum_probs=182.7

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCCh----HHHHhhcCcee
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNH----PKVFTLAGLSV  150 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~----~~~~~~~G~~~  150 (407)
                      .....+++.++++. +.       ++.++  ++||++++.+++  ...+.+||+|+++.|.|...    .......|.++
T Consensus        60 p~~~~Le~~lA~l~-g~-------~~~v~--~~sG~~Ai~~~l--~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v  127 (405)
T PRK08776         60 PTRDLLGEALAELE-GG-------AGGVI--TATGMGAINLVL--NALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFAL  127 (405)
T ss_pred             hHHHHHHHHHHHHh-CC-------CceEE--EcCHHHHHHHHH--HHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEE
Confidence            34577888888876 42       23455  677789998884  44578999999999999873    34445668788


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++.       .|++++++.+.  ++++++++ ++|+||||.+.   ++++|+++|+++|+++|+|++|......    
T Consensus       128 ~~v~~-------~d~~~l~~~i~--~~tklV~l-~~P~NPtG~v~---dl~~I~~la~~~gi~vIvD~a~a~~~~~----  190 (405)
T PRK08776        128 ITADL-------TDPRSLADALA--QSPKLVLI-ETPSNPLLRIT---DLRFVIEAAHKVGALTVVDNTFLSPALQ----  190 (405)
T ss_pred             EEECC-------CCHHHHHHhcC--cCCeEEEE-ECCCCCCCccC---CHHHHHHHHHHcCCEEEEECCCcccccC----
Confidence            77754       37889998886  56777777 89999999974   6889999999999999999999643211    


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                        .++    . ....+++.|.+|.++.+| ...|++  +++++++.+++..    .......+++.+.+.++...++   
T Consensus       191 --~pl----~-~gaDivv~S~tK~l~g~~~~~~G~v--v~~~~~l~~~l~~----~~~~~g~~~s~~~a~l~~~gl~---  254 (405)
T PRK08776        191 --KPL----E-FGADLVLHSTTKYINGHSDVVGGAV--VARDAELHQQLVW----WANALGLTGSPFDAFLTLRGLR---  254 (405)
T ss_pred             --Ccc----c-ccCCEEEecCceeecCCCCceEEEE--EeCCHHHHHHHHH----HHHhcCCCCCHHHHHHHHhhhC---
Confidence              111    1 122488999999998654 567887  5777665555433    2222233456666666554333   


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCC-----ccc----ccCCceeEEec-CCCHHHHHHhHhhcc
Q 015435          310 MYKEWTLELKAMADRIISMRQQLFDALSARGT------PGD-----WSH----IIKQIGMFTFT-GLNSEQVAFMTKEYH  373 (407)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~-----~~~----~~~~~~~~~~~-~~~~~~~~~~l~~~g  373 (407)
                             .++.+.++..++...+.+.|++.+.      |..     ...    ....||++.+. +-+.+.+.++++...
T Consensus       255 -------tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~  327 (405)
T PRK08776        255 -------TLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLR  327 (405)
T ss_pred             -------cHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhCC
Confidence                   3566777888899999999987642      110     000    01235666654 224444555555544


Q ss_pred             EEE-cC--C-------------------------C------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          374 IYM-TS--D-------------------------G------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       374 i~~-~~--g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +.. .+  |                         |      |+|++-   |+.+.+++-|+++|+.
T Consensus       328 l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svGl---E~~~dli~dl~~al~~  390 (405)
T PRK08776        328 YFTLAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVGI---ESAEDLLIDLRAGLAR  390 (405)
T ss_pred             cceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHHHHH
Confidence            422 11  1                         1      888873   7788888888887764

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.88  E-value=7.4e-21  Score=182.14  Aligned_cols=289  Identities=15%  Similarity=0.164  Sum_probs=190.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh--hcCCCeEEecCCCCCChHHHH---hhcCcee
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR--HYHQLTIYIPQPTWGNHPKVF---TLAGLSV  150 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~--~~~gd~Vi~~~p~y~~~~~~~---~~~G~~~  150 (407)
                      .++++|+.+++++ +.     ++++|++  |+|+|+++.+++..+..  ..+||+|+++.+.|+.+...+   +..|.++
T Consensus        48 ~~~~~r~~la~~~-g~-----~~~~v~~--~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v  119 (402)
T TIGR02006        48 AVENARNQVAELI-GA-----DSREIVF--TSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEV  119 (402)
T ss_pred             HHHHHHHHHHHHh-CC-----CCCeEEE--eCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEE
Confidence            4667788888887 42     2478999  99999999988544322  258999999999998876654   3569999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++..  .++.+|++.+++.+.  ++++++++ ++++||||++.+   +++|+++|+++|+++++|++++.... +.  
T Consensus       120 ~~v~~~--~~~~~d~~~l~~~l~--~~~~lv~v-~~~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~g~~-~~--  188 (402)
T TIGR02006       120 TYLPPK--SNGLIDLEELKAAIR--DDTILVSI-MHVNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSVGKI-PI--  188 (402)
T ss_pred             EEEccC--CCCcCCHHHHHHhcC--CCCEEEEE-ECCCcCceeccc---HHHHHHHHHHcCCEEEEEcchhcCCc-cc--
Confidence            999883  456789999999987  55666666 899999999764   77888889999999999999753221 11  


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh---hhcccCCCChhHHHHHHHHhcC
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV---IRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                         .+    ......+++.|.+|.+|.+|  +|++  ++.++.. .++.......   .+....+++.....++...++-
T Consensus       189 ---~~----~~~~~D~~~~s~~K~~gp~G--~G~l--~~~~~~~-~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~  256 (402)
T TIGR02006       189 ---NV----NELKVDLMSISGHKIYGPKG--IGAL--YVRRKPR-VRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRI  256 (402)
T ss_pred             ---Cc----cccCCCEEEEehhhhcCCCc--eEEE--EEccCCC-CCCCceecCCCccCCccCCCccHHHHHHHHHHHHH
Confidence               11    11234578888899877556  6777  3553211 1111101000   0111224455555555455542


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc------cCCceeEEecCCCHHHHHHhHhhccEEEcCC--
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI------IKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD--  379 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g--  379 (407)
                      .      ....+...+++++.++++.+.|++++.   +.+.      .|....+.+.+.+.+.+...++  ++.+..|  
T Consensus       257 ~------~~~~~~~~~~~~~l~~~l~~~l~~~~~---v~~~~~~~~~~p~~~~v~f~~~~~~~~~~~l~--~i~v~~G~~  325 (402)
T TIGR02006       257 A------KEEMAQDTAHVLALRDRLLNGIKSIEE---VYLNGDLEHRVPGNLNVSFNYVEGESLIMALK--DLAVSSGSA  325 (402)
T ss_pred             H------HHhHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCccccCCCeEEEEEeCcCHHHHHHhcC--CEEEechhh
Confidence            2      134666778899999999999987542   2222      1222235555566655544443  5544322  


Q ss_pred             -----------------------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          380 -----------------------G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 -----------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                                             |  |+|++. .+++|++++++.|+++++.+
T Consensus       326 c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~  378 (402)
T TIGR02006       326 CTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKL  378 (402)
T ss_pred             cCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence                                   2  999876 47799999999999987653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.88  E-value=2.1e-20  Score=177.17  Aligned_cols=277  Identities=17%  Similarity=0.152  Sum_probs=181.3

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~  148 (407)
                      +.....+|+++++++. +.       +..++  ++||++|+.+++  ...+.+||+|++++|+|......+.    ..|+
T Consensus        59 ~~p~~~~Le~~lA~~~-g~-------~~~i~--~~sG~~Ai~~~l--~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi  126 (388)
T PRK07811         59 GNPTRTALEEQLAALE-GG-------AYGRA--FSSGMAATDCLL--RAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGV  126 (388)
T ss_pred             CCccHHHHHHHHHHHh-CC-------CceEE--eCCHHHHHHHHH--HHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCe
Confidence            4567899999999988 43       33455  667799999984  4447899999999999986544333    3577


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++.       .|++++++.+.  +++++|++ ++|+||||.+   .++++|+++|+++|+++|+|++|+...... 
T Consensus       127 ~~~~~d~-------~d~e~l~~~i~--~~tklV~i-e~p~NPtg~~---~dl~~I~~la~~~gi~lIvD~a~a~~~~~~-  192 (388)
T PRK07811        127 EYTPVDL-------SDLDAVRAAIT--PRTKLIWV-ETPTNPLLSI---TDIAALAELAHDAGAKVVVDNTFASPYLQQ-  192 (388)
T ss_pred             EEEEeCC-------CCHHHHHHhcC--cCCeEEEE-ECCCCCccee---cCHHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            7776643       48899999887  56777777 8999999984   578899999999999999999987554321 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                           ++    . ....++++|++|.++.+| .+.||+  +++++++.+++.    ..........+...+..+...++.
T Consensus       193 -----p~----~-~gaDivv~S~sK~l~g~~~~~gG~v--v~~~~~l~~~~~----~~~~~~g~~~s~~~a~l~~~~L~t  256 (388)
T PRK07811        193 -----PL----A-LGADVVVHSTTKYIGGHSDVVGGAL--VTNDEELDEAFA----FLQNGAGAVPGPFDAYLTLRGLKT  256 (388)
T ss_pred             -----ch----h-hCCcEEEecCceeecCCCCcEEEEE--EECCHHHHHHHH----HHHHhcCCCCCHHHHHHHHhccCc
Confidence                 11    1 123489999999998655 456888  576665444432    222222223344443333333332


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCC-----ccc----ccCCceeEEec-CCCHHHHHHhHhh
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGT------PGD-----WSH----IIKQIGMFTFT-GLNSEQVAFMTKE  371 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~-----~~~----~~~~~~~~~~~-~~~~~~~~~~l~~  371 (407)
                                +..+.++..++...+.+.|++.+.      |..     ++.    ....||++.+. +-+.+.+.++++.
T Consensus       257 ----------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~  326 (388)
T PRK07811        257 ----------LAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCAR  326 (388)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHh
Confidence                      344555667788888888886642      110     000    01236666654 2234445555555


Q ss_pred             ccEEE-cC--C--------------------------C--eEEecCCCCCChhHHHHHHHHHHH
Q 015435          372 YHIYM-TS--D--------------------------G--RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       372 ~gi~~-~~--g--------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      -.+.. .+  |                          +  |||++-   |+.+.+++-|.++|+
T Consensus       327 l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~  387 (388)
T PRK07811        327 TKVFTLAESLGGVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI---EDVADLLADLEQALG  387 (388)
T ss_pred             CCcceeeccCCCCcceEeCCcccCcccCCHhhcCCCCCEEEEEeCC---CCHHHHHHHHHHHhh
Confidence            44422 11  1                          1  888773   789999999988875

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.88  E-value=2.3e-20  Score=179.47  Aligned_cols=350  Identities=11%  Similarity=0.059  Sum_probs=209.4

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc--cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK--EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...+++++||..|....+.| ..++++++++.+++. ......  .| +.....++.+.+++...+      ..+.+++ 
T Consensus        38 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~-~~~~~~~~~~-~~~~~~~la~~l~~~~p~------~~~~v~f-  107 (423)
T PRK05964         38 LADGRELIDAISSWWVATHG-HNHPYIDQAIREQLD-RLDHVIFAGF-THEPAERLAQRLVALTPG------GLDHVFF-  107 (423)
T ss_pred             eCCCCEEEEcchhHHhccCC-CCCHHHHHHHHHHHh-hCCCcccccc-CCHHHHHHHHHHHHhCCC------CCCEEEE-
Confidence            44678999999997655677 667788888888876 211111  12 222233455555554311      1268999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----C-CCeEEecCCCCCChHHHHhhcCc-------------eeeEEEeecCCCCCcCh
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----H-QLTIYIPQPTWGNHPKVFTLAGL-------------SVKTYRYYDPATRGLNF  165 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~-gd~Vi~~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~  165 (407)
                       +++|++|++.++++.+...     . ..+|+...-+|++........+.             .+..++....+....++
T Consensus       108 -~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  186 (423)
T PRK05964        108 -SDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATL  186 (423)
T ss_pred             -eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHH
Confidence             9999999999998887651     2 35788888888876543332111             12223321000001127


Q ss_pred             hhHHHHHHcCCC-CcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          166 QGLLEDLRAAPS-GAIVLLHACAHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       166 ~~l~~~i~~~~~-~~~v~i~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      +.+++.+.+.+. ..++++.+..++.+|... +.+.+++|.++|++||+++|+||++.+++..+   ..+....+ ....
T Consensus       187 ~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G---~~~a~~~~-~v~p  262 (423)
T PRK05964        187 DALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTG---TLFACEQA-GVSP  262 (423)
T ss_pred             HHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---chhHHHhc-CCCC
Confidence            788888864333 345555332466677764 89999999999999999999999998887654   22222221 1112


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH--hhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL--KLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      +   +.+++|.++.+++++|++  +++ +++.+.+....  .......+++.+++++.++.+.++...        -+.+
T Consensus       263 D---i~~~~K~l~gG~~p~~av--~~~-~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~--------~~~~  328 (423)
T PRK05964        263 D---IMCLSKGLTGGYLPLAAT--LCT-AEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFE--------DEPV  328 (423)
T ss_pred             C---eeeeehhhhcCcccceEE--EEc-HHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHH--------hcCH
Confidence            2   236789998544899998  454 54444332110  011112233567788887777766321        1234


Q ss_pred             HHHHHHHHHHHHHHHHhcC-CCCCcccccCCceeEEe--cCCC----HHHHHHhHhhccEEEcCCC---eEEecC-CCCC
Q 015435          322 ADRIISMRQQLFDALSARG-TPGDWSHIIKQIGMFTF--TGLN----SEQVAFMTKEYHIYMTSDG---RISMAG-LSSK  390 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~gi~~~~gg---Ris~~~-~~~e  390 (407)
                      .++++++.+++.+.|+++. .+ .+......|.++.+  .+-+    ...+...|.++||.+.+.+   ||+... ++++
T Consensus       329 ~~~~~~~g~~l~~~l~~l~~~~-~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~~~~lR~~p~l~~t~e  407 (423)
T PRK05964        329 LERVAALSAGLAEGLEPFRDLP-GVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPLGNTIYLMPPYIITAE  407 (423)
T ss_pred             HHHHHHHHHHHHHHHHhhccCC-CeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEecCCEEEEeCCcccCHH
Confidence            4666667777777776652 11 12112233443322  1211    2334555566899998865   777552 5889


Q ss_pred             ChhHHHHHHHHHHHhh
Q 015435          391 TVPHLTDAIHAAVTRM  406 (407)
Q Consensus       391 ~i~~~~~~l~~~l~~~  406 (407)
                      |+++++++++++++++
T Consensus       408 dId~~v~~l~~al~~~  423 (423)
T PRK05964        408 ELDRITDAIVEVADEL  423 (423)
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999999999874

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.88  E-value=2.7e-20  Score=179.48  Aligned_cols=344  Identities=12%  Similarity=0.099  Sum_probs=208.7

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++++||+..|....+.| ..++++++++.+++.  ......+  .+.....++.+.+++...+.     ..+.+++ 
T Consensus        52 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~--~~~~~~~~~~~~~~~~~la~~l~~~~p~~-----~~~~v~f-  122 (443)
T PRK06058         52 DVDGNRLIDLGSGIAVTSVG-NSAPRVVEAVREQVA--RFTHTCFMVTPYEGYVAVAEQLNRLTPGD-----HEKRSAL-  122 (443)
T ss_pred             eCCCCEEEEcCcchhhhccC-CCCHHHHHHHHHHHH--hccCccccccCCHHHHHHHHHHHHhCCCC-----CCCEEEE-
Confidence            34678999999987655677 667788888888886  2111111  11122233444444433110     0147888 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-C--------c-----eeeEEEeecCCCC----CcC--
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-G--------L-----SVKTYRYYDPATR----GLN--  164 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G--------~-----~~~~v~~~~~~~~----~~d--  164 (407)
                       +++|++|++.++++.+.....++|+....+|+++....... +        .     .+..+|...+.+.    ..+  
T Consensus       123 -~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (443)
T PRK06058        123 -FNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGE  201 (443)
T ss_pred             -eCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchH
Confidence             99999999999988877766678999999998887544321 1        0     1222222111110    011  


Q ss_pred             ------hhhHHHHHHcCCCCcEEEEecCCCCCCC-CC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHH
Q 015435          165 ------FQGLLEDLRAAPSGAIVLLHACAHNPTG-VD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR  236 (407)
Q Consensus       165 ------~~~l~~~i~~~~~~~~v~i~~~p~NPtG-~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~  236 (407)
                            .+.+++.+.  ++..+.++ ..|.++.| .. .+++.+++|.++|++||+++|+||++.+|+..+   ..+...
T Consensus       202 ~~~~~~~~~l~~~~~--~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG---~~fa~~  275 (443)
T PRK06058        202 EAAARAITVIEKQVG--ADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTG---AWFACE  275 (443)
T ss_pred             HHHHHHHHHHHHhhC--CCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCh---hhhHHH
Confidence                  112222222  23333333 45666654 43 568899999999999999999999999997654   223322


Q ss_pred             HHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435          237 MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTL  316 (407)
Q Consensus       237 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  316 (407)
                      .+ .-..+++   +++|.++ .|+++|++  +++     +++.+.+.......+++.+++++.++.+.|+...      +
T Consensus       276 ~~-gv~PDiv---~~gK~l~-~G~Pi~av--~~~-----~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~------~  337 (443)
T PRK06058        276 HE-GIVPDLI---TTAKGIA-GGLPLSAV--TGR-----AEIMDAPHPGGLGGTYGGNPVACAAALAAIETIE------E  337 (443)
T ss_pred             hc-CCCCCEE---EEccccc-CCCccEEE--EEc-----HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH------H
Confidence            22 1122333   3589999 89999999  565     4444444433334566889999999998886321      1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC-CCcccccCCceeEEec--CC-----CHHH---HHHhHhhccEEEcCCC-----
Q 015435          317 ELKAMADRIISMRQQLFDALSARGTP-GDWSHIIKQIGMFTFT--GL-----NSEQ---VAFMTKEYHIYMTSDG-----  380 (407)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~--~~-----~~~~---~~~~l~~~gi~~~~gg-----  380 (407)
                        +.+.++++++.+++.+.|+++... ..+.-+...|.++.+.  .-     +.+.   +...+.++||.+.+++     
T Consensus       338 --~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~  415 (443)
T PRK06058        338 --DDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNV  415 (443)
T ss_pred             --cCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCCCE
Confidence              245566777778888888765211 0122245566665432  11     1222   3333445899998753     


Q ss_pred             -eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 -RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 -Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                       |+...- ++++++++++++|+++++++
T Consensus       416 lr~~Ppl~~t~~~i~~~~~~l~~~l~~~  443 (443)
T PRK06058        416 IRLLPPLVIGDELLREGLDVLEAALADL  443 (443)
T ss_pred             EEEECCCccCHHHHHHHHHHHHHHHHhC
Confidence             664332 58899999999999999764

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.88  E-value=3e-20  Score=176.82  Aligned_cols=216  Identities=17%  Similarity=0.123  Sum_probs=149.7

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH----HHHhhcCce
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP----KVFTLAGLS  149 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~----~~~~~~G~~  149 (407)
                      ......+++.++++. +.       ++.++  ++||+.++.+++  ...+.+||+|+++.|.|....    ..+...|++
T Consensus        64 ~p~~~~le~~lA~l~-g~-------~~~i~--~~sG~~Al~~~l--~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~  131 (403)
T PRK07503         64 NPTLALLEQRMASLE-GG-------EAAVA--LASGMGAITATL--WTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVT  131 (403)
T ss_pred             CchHHHHHHHHHHHh-CC-------CcEEE--EcCHHHHHHHHH--HHHcCCCCEEEEccCccchHHHHHHHHHhhCCEE
Confidence            445888999999988 43       34566  788899999884  445789999999999987643    344578999


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                      ++.++.       .|++++++.+.  +++++|++ ++|+||||.+.+   +++|+++|+++|+++|+|++|+.....   
T Consensus       132 v~~vd~-------~d~~~l~~~i~--~~tklV~l-e~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~---  195 (403)
T PRK07503        132 VRHVDL-------TDPAALKAAIS--DKTRMVYF-ETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQ---  195 (403)
T ss_pred             EEEeCC-------CCHHHHHHhcC--ccCcEEEE-eCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC---
Confidence            888865       27889999887  56788777 899999999764   788888899999999999999754332   


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                       .  ++    . ....++++|+||.++.+| .+.|++   +.++++.+++...  ..........+.+.+..+...|+. 
T Consensus       196 -~--~l----~-~g~Di~v~S~tK~l~g~gd~~gG~v---~~~~~l~~~l~~~--~~~~~~g~~~s~~~a~l~l~~L~t-  261 (403)
T PRK07503        196 -R--PL----E-LGADLVVHSATKYLGGHGDITAGLV---VGGKALADRIRLE--GLKDMTGAVMSPFDAFLLMRGLKT-  261 (403)
T ss_pred             -C--ch----h-hCCCEEEccccccccCCCceeEEEE---EcCHHHHHHHHhh--hHHhCcCCCCCHHHHHHHHcCcch-
Confidence             1  11    1 123488999999999776 566776   4556555544321  112222234555555544443332 


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                               +..+.++..++...+.+.|++.+
T Consensus       262 ---------l~~r~~~~~~na~~~a~~L~~~p  284 (403)
T PRK07503        262 ---------LALRMDRHCASAQAVAEWLARHP  284 (403)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHhCC
Confidence                     34444555577778888887654

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.88  E-value=3.3e-20  Score=178.75  Aligned_cols=326  Identities=17%  Similarity=0.214  Sum_probs=196.0

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc--cc-ccCC-CCCCcHHH----HHHHHHHHhCCCCCCCCCCce
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS--RV-KEYL-PIVGLVDF----NKLSAKLILGADSPAIKDNRV  101 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~y~-~~~g~~~l----~~~~a~~~~~~~~~~~~~~~i  101 (407)
                      .++.|+|..+.     . |.++.+.+++...+.....  .. ..|. ...-...+    ++.+++++ +..     ..+|
T Consensus        24 ~~~~~~l~~~~-----n-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~-g~~-----~~~i   91 (416)
T PRK00011         24 QEEHIELIASE-----N-FVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELF-GAE-----YANV   91 (416)
T ss_pred             HhcCeeeeccc-----C-cCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh-CCC-----ceee
Confidence            36889999764     2 5565666655444320000  00 0110 01112222    33566655 431     2345


Q ss_pred             EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH-----HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC
Q 015435          102 TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK-----VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP  176 (407)
Q Consensus       102 ~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~-----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~  176 (407)
                      ++  + +||+++..++  ...+.+||+|+++.|+|..+..     .+...|++++.++++ ++++.+|++++++.+.+ .
T Consensus        92 ~~--~-sgt~al~~~l--~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~~-~  164 (416)
T PRK00011         92 QP--H-SGSQANAAVY--FALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVD-EETGLIDYDEVEKLALE-H  164 (416)
T ss_pred             ec--C-CchHHHHHHH--HHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcC-cccCCcCHHHHHHHHHh-c
Confidence            44  5 5678888874  4447899999999999976532     223456788888873 34578999999999973 2


Q ss_pred             CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc-cccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ-GFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      +++++++ ++++||  ..   .++++|+++|+++|+++|+|++|. ++...+..  ...   + .  ...++++|++|.+
T Consensus       165 ~~k~v~~-~~~~~~--~~---~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~--~~~---~-~--~~di~~~S~~K~l  230 (416)
T PRK00011        165 KPKLIIA-GASAYS--RP---IDFKRFREIADEVGAYLMVDMAHIAGLVAAGVH--PSP---V-P--HADVVTTTTHKTL  230 (416)
T ss_pred             CCCEEEE-CCCcCC--Cc---cCHHHHHHHHHHcCCEEEEECcchhcccccCcc--CCC---C-C--CCcEEEecCCcCC
Confidence            4566666 444544  32   358899999999999999999974 23222100  000   1 1  2347799999976


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChh-HHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIH-GASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                        +|.|.||+  +++++++.+++..    .......+.+.. .+.++..++...     ..+.+++.+++++++++++.+
T Consensus       231 --~g~~gg~i--~~~~~~~~~~l~~----~~~~~~~~~~~~~~~aa~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~~  297 (416)
T PRK00011        231 --RGPRGGLI--LTNDEELAKKINS----AVFPGIQGGPLMHVIAAKAVAFKEA-----LEPEFKEYAQQVVKNAKALAE  297 (416)
T ss_pred             --CCCCceEE--EeCCHHHHHHHHH----HhCccccCCccHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHH
Confidence              68899999  6766665555433    222222222222 222222222111     113457778889999999999


Q ss_pred             HHHhcCCCCCccccc-CCceeEEecCC-----CHHHHHHhHhhccEEEcCC-------------C-eEEec-----CCCC
Q 015435          335 ALSARGTPGDWSHII-KQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSD-------------G-RISMA-----GLSS  389 (407)
Q Consensus       335 ~l~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~g-------------g-Ris~~-----~~~~  389 (407)
                      .|++.|    +.+.. ...+++.|+.+     +.+.+.+.|+++||.+..+             + |++..     ++++
T Consensus       298 ~L~~~g----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~  373 (416)
T PRK00011        298 ALAERG----FRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKE  373 (416)
T ss_pred             HHHhCC----CeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCH
Confidence            999887    44432 11235666544     4556777778899999731             2 77431     2468


Q ss_pred             CChhHHHHHHHHHHHh
Q 015435          390 KTVPHLTDAIHAAVTR  405 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~  405 (407)
                      +|++++++.|++++..
T Consensus       374 ~di~~l~~~l~~~~~~  389 (416)
T PRK00011        374 AEMKEIAELIADVLDN  389 (416)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999998754

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.88  E-value=4.6e-20  Score=173.68  Aligned_cols=278  Identities=16%  Similarity=0.117  Sum_probs=187.1

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~  148 (407)
                      +......|+++++++. +.       +++++  ++|+++++.+++  ...+.+||+|+++.|+|......+    ...|+
T Consensus        51 ~npt~~~Le~~lA~le-g~-------e~ivv--t~gg~~Ai~~~l--~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi  118 (388)
T PRK08861         51 GNPNRGLLEQTLSELE-SG-------KGAVV--TNCGTSALNLWV--SALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF  118 (388)
T ss_pred             CCchHHHHHHHHHHHh-CC-------CeEEE--ECCHHHHHHHHH--HHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe
Confidence            4556889999999988 42       78999  999999999994  445789999999999998654433    23467


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++.       .|++++++++.  ++++++++ ++|+||||.+++   +++|+++|+++|+++|+|++|....... 
T Consensus       119 ~v~~vd~-------~d~e~l~~~i~--~~tklV~l-esP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~~-  184 (388)
T PRK08861        119 KVQFVDQ-------SDAAALDAALA--KKPKLILL-ETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQK-  184 (388)
T ss_pred             EEEEECC-------CCHHHHHHhcC--cCCeEEEE-ECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccCC-
Confidence            7777642       48899998887  56788777 899999999887   5677788999999999999997544321 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                           ++    . ....++++|++|.++.++ ...|++  ++.++++.++    +...........++.....+...++.
T Consensus       185 -----pl----~-~GaDivv~S~tK~l~G~~d~~gG~i--~~~~~~~~~~----~~~~~~~~G~~~~p~~a~l~~rgl~T  248 (388)
T PRK08861        185 -----PL----E-LGADFVIHSTTKYINGHSDVIGGVL--ITKTKEHAEE----LAWWGNCIGATGTPFDSYMTLRGIRT  248 (388)
T ss_pred             -----Cc----c-cCCCEEEeecceeccCCCcceeEEE--EecHHHHHHH----HHHHHhccCCCCChHHHHHHHhcCCC
Confidence                 11    1 123589999999987543 567877  5665554433    33333333345566666666555554


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCc-----c----cccCCceeEEec-CCCHHHHHHhHhh
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGT------PGDW-----S----HIIKQIGMFTFT-GLNSEQVAFMTKE  371 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~-----~----~~~~~~~~~~~~-~~~~~~~~~~l~~  371 (407)
                      .          ..+.++..++...+.+.|+..+.      |..-     .    ....-||++.|. +-+.+.+.++++.
T Consensus       249 l----------~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~  318 (388)
T PRK08861        249 L----------GARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKA  318 (388)
T ss_pred             H----------HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhc
Confidence            3          44556667778888888887642      1100     0    011246666544 2244555556555


Q ss_pred             ccEEE---cCC-------------------------C------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          372 YHIYM---TSD-------------------------G------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       372 ~gi~~---~~g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      -.+..   .=|                         |      |+|++-   |+.+.+++-|+++|+.
T Consensus       319 l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl---E~~~dli~Dl~~al~~  383 (388)
T PRK08861        319 LALFSLAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGL---EDAQDLIADLDQAFAK  383 (388)
T ss_pred             CCcceEccCCCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHHHHH
Confidence            44322   111                         1      888873   7889999999988865

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.88  E-value=7e-20  Score=173.11  Aligned_cols=276  Identities=17%  Similarity=0.159  Sum_probs=183.7

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh---hcCcee
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT---LAGLSV  150 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~---~~G~~~  150 (407)
                      .....++++.+++++ +.       +++++  ++||++|+..++  ...+.+||+|+++.|.|..+...++   ..|+++
T Consensus        52 np~~~~lE~~lA~l~-g~-------~~~l~--~~sG~~Ai~~~l--~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v  119 (385)
T PRK08574         52 NPTLRPLEEALAKLE-GG-------VDALA--FNSGMAAISTLF--FSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKV  119 (385)
T ss_pred             CccHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEE
Confidence            456889999999998 53       57888  999999999884  5558899999999999999877664   456666


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCC-CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAP-SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                      +.++        +|++++++++.  + +++++++ ++|+||||.+++   +++|+++|+++|+++|+|++|+.....   
T Consensus       120 ~~~~--------~d~~~l~~~i~--~~~tklV~i-e~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~---  182 (385)
T PRK08574        120 VLAY--------PSTEDIIEAIK--EGRTKLVFI-ETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLLY---  182 (385)
T ss_pred             EEEC--------CCHHHHHHhcC--ccCceEEEE-ECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC---
Confidence            5542        36788998887  4 5777776 999999999886   678888899999999999998533221   


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                       .  ++    . .+..+++.|++|.++.+|..+ |++  ++.++++.++++.    .........+......+...++. 
T Consensus       183 -~--~l----~-~GaDivv~S~sK~l~g~~d~~gG~v--i~~~~~~~~~~~~----~~~~~g~~~~p~~a~l~l~~l~t-  247 (385)
T PRK08574        183 -R--PL----R-HGADFVVHSLTKYIAGHNDVVGGVA--VAWSGEFLEELWE----WRRRLGTIMQPFEAYLVLRGLKT-  247 (385)
T ss_pred             -C--hh----h-hCCcEEEeeCceeecCCCCceeEEE--EECcHHHHHHHHH----HHHhcCCCCCHHHHHHHHcccCc-
Confidence             1  11    1 234688999999998777665 556  5666665554433    22222334444444444433332 


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCccc---------cc--CCceeEEec-CCCHHHHHHhHh
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGT------PGDWSH---------II--KQIGMFTFT-GLNSEQVAFMTK  370 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~---------~~--~~~~~~~~~-~~~~~~~~~~l~  370 (407)
                               +....++..++...+.+.|++.+.      |..-+.         ..  ..||++.+. .-+.+.+.++++
T Consensus       248 ---------L~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~  318 (385)
T PRK08574        248 ---------LEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLKFLR  318 (385)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHHHHH
Confidence                     344555566677888888876542      110000         01  135555543 224555666666


Q ss_pred             hccEEE-cC--C-------------------------C------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          371 EYHIYM-TS--D-------------------------G------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       371 ~~gi~~-~~--g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +-.+.. .+  |                         |      |||++-   |+.+.+++-|.++++.
T Consensus       319 ~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dli~dl~~al~~  384 (385)
T PRK08574        319 SLKLIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGL---EDVEDLIEDLDQALGS  384 (385)
T ss_pred             cCCcceEccCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhc
Confidence            544432 11  1                         1      888873   7899999999998864

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.88  E-value=3.2e-20  Score=175.90  Aligned_cols=303  Identities=14%  Similarity=0.109  Sum_probs=192.9

Q ss_pred             cchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hcCCCe
Q 015435           50 VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLT  128 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~  128 (407)
                      ..+..+++.+.+.  .. ...  +.....+|++++++++ +.       +++++  |+|||+|+.+++  ... +.+||+
T Consensus        13 ~~~e~~~~~~~l~--~~-~~~--~g~~~~~le~~la~~~-g~-------~~~v~--~~sgt~al~lal--~al~~~~Gd~   75 (379)
T PRK11658         13 GDEELAAVKEVLR--SG-WIT--TGPKNQALEQAFCQLT-GN-------QHAIA--VSSATAGMHITL--MALGIGPGDE   75 (379)
T ss_pred             CHHHHHHHHHHHH--cC-Ccc--CCHhHHHHHHHHHHHh-CC-------CeEEE--ECCHHHHHHHHH--HHcCCCCCCE
Confidence            3455556656554  21 222  2345789999999988 54       56788  999999999984  444 579999


Q ss_pred             EEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHH
Q 015435          129 IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMR  208 (407)
Q Consensus       129 Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~  208 (407)
                      |++++++|..+...+...|++++.+++ +++++.+|++++++.+.  +++++++    |.||+|...   ++++|+++|+
T Consensus        76 Viv~~~~~~~~~~~~~~~G~~~v~vd~-~~~~~~~d~~~l~~~i~--~~tkav~----~~~~~G~~~---d~~~i~~~a~  145 (379)
T PRK11658         76 VITPSLTWVSTLNMIVLLGATPVMVDV-DRDTLMVTPEAIEAAIT--PRTKAII----PVHYAGAPA---DLDAIRAIGE  145 (379)
T ss_pred             EEECCCcHHHHHHHHHHcCCEEEEEec-CCCcCCcCHHHHHHhcc--cCCeEEE----EeCCCCCcC---CHHHHHHHHH
Confidence            999999999999999999999999998 35556789999999987  5667665    356899954   5788888999


Q ss_pred             HcCceeeecccccc-ccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhh
Q 015435          209 SKGLLPFFDSAYQG-FASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIR  287 (407)
Q Consensus       209 ~~~~~li~D~~y~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~  287 (407)
                      ++|+++|+|++++. ..+.+.     .   ....+.   .+.||++...+++.+.|++  ++.++++.+++.........
T Consensus       146 ~~gi~vi~D~a~a~g~~~~~~-----~---~g~~g~---~~~Sf~~~K~l~~g~GG~v--~~~~~~~~~~~~~~~~~G~~  212 (379)
T PRK11658        146 RYGIPVIEDAAHAVGTYYKGR-----H---IGARGT---AIFSFHAIKNITCAEGGLV--VTDDDELADRLRSLKFHGLG  212 (379)
T ss_pred             HcCCeEEEECCCccCCeECCe-----e---cCCCCC---EEEeCCCCCcCcccCceEE--EECCHHHHHHHHHHHHcCCC
Confidence            99999999999863 333321     0   111122   4556665545566677887  67888877766542211100


Q ss_pred             c------------------ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          288 P------------------MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       288 ~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      .                  ...+.......++....+.        +.+++..++-+++.+.+.+.|++++.   ..+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql--------~~l~~~~~~r~~~a~~~~~~L~~~~~---~~~~~  281 (379)
T PRK11658        213 VDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQL--------AKLEALNARRREIAARYLQALADLPF---QPLSL  281 (379)
T ss_pred             cchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhcCCCC---ccCcC
Confidence            0                  0001111122233322221        33556666666777777888876652   11111


Q ss_pred             C----CceeEEe---c-----CCCHHHHHHhHhhccEEEcC----------------CC----------e-EEec---CC
Q 015435          350 K----QIGMFTF---T-----GLNSEQVAFMTKEYHIYMTS----------------DG----------R-ISMA---GL  387 (407)
Q Consensus       350 ~----~~~~~~~---~-----~~~~~~~~~~l~~~gi~~~~----------------gg----------R-is~~---~~  387 (407)
                      +    ...++.+   +     +.+.+.+.+.|+++||.+..                .+          | +++.   .+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l  361 (379)
T PRK11658        282 PAWPHQHAWHLFIIRVDEERCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDM  361 (379)
T ss_pred             CCCCCceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCC
Confidence            1    1122222   2     23567777777778987642                01          3 2322   26


Q ss_pred             CCCChhHHHHHHHHHH
Q 015435          388 SSKTVPHLTDAIHAAV  403 (407)
Q Consensus       388 ~~e~i~~~~~~l~~~l  403 (407)
                      ++++++++++.|++++
T Consensus       362 ~~~~~~~i~~~i~~~~  377 (379)
T PRK11658        362 TDADVDRVITALQQIA  377 (379)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            7788999999998865

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.88  E-value=4.6e-20  Score=174.63  Aligned_cols=216  Identities=16%  Similarity=0.210  Sum_probs=150.9

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH----HHHhhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP----KVFTLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~----~~~~~~G~  148 (407)
                      +.....++++.+++++ +.       +++++  ++||++++.+++  ...+.+||+|+++.+.|.+..    ..+...|.
T Consensus        52 ~~p~~~~le~~la~l~-g~-------~~~~~--~~sG~~Ai~~al--~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~  119 (380)
T TIGR01325        52 ANPTVAAFEERIAALE-GA-------ERAVA--TATGMSAIQAAL--MTLLQAGDHVVASRSLFGSTVGFISEILPRFGI  119 (380)
T ss_pred             CCchHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEecCCcchHHHHHHHHHHHhCC
Confidence            3445788999999987 53       56788  999999999984  444789999999998887643    34567899


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++.       .|++++++.+.  ++++++++ .+|+||+|.+.   ++++|+++|+++|+++|+|++|....... 
T Consensus       120 ~v~~v~~-------~d~~~l~~~i~--~~tklV~l-e~p~np~g~~~---dl~~I~~la~~~gi~livD~a~~~~~~~~-  185 (380)
T TIGR01325       120 EVSFVDP-------TDLNAWEAAVK--PNTKLVFV-ETPSNPLGELV---DIAALAELAHAIGALLVVDNVFATPVLQQ-  185 (380)
T ss_pred             EEEEECC-------CCHHHHHHhcC--CCceEEEE-ECCCCCCCeee---CHHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            9888865       26888888886  56777777 89999999976   57888888999999999999987554321 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                           ++    . ....+++.|+||.++.+|.++|.+  ++.+++..+.+..    .........+...+..+   ++..
T Consensus       186 -----pl----~-~g~Divv~S~sK~l~g~g~~~gG~--vv~~~~~~~~l~~----~~~~~g~~~~p~~a~~~---l~~l  246 (380)
T TIGR01325       186 -----PL----K-LGADVVVYSATKHIDGQGRVMGGV--IAGSEELMAEVAV----YLRHTGPAMSPFNAWVL---LKGL  246 (380)
T ss_pred             -----ch----h-hCCCEEEeeccceecCCCCeEEEE--EEeCHHHHHHHHH----HHHhhCCCCCHHHHHHH---Hhcc
Confidence                 11    1 123578889999999888887554  2444554444333    32222223333333333   3322


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                             +.+..+.++..+++..+.+.|++.+
T Consensus       247 -------~tl~~r~~~~~~~a~~la~~L~~~p  271 (380)
T TIGR01325       247 -------ETLSLRMQKQFDSALAIAEWLQAQP  271 (380)
T ss_pred             -------CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence                   2344556677788888888888765

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.88  E-value=6.7e-20  Score=173.38  Aligned_cols=324  Identities=15%  Similarity=0.138  Sum_probs=202.9

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-ccCCCCCC----cHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-KEYLPIVG----LVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~g----~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      .+++++|+...|   .|....+.+.+++.+.+. ..+.. .+-.-..|    +.++.+++++++ +.       +..++ 
T Consensus       101 ~r~~l~FsSndY---LGL~~~p~v~~a~~~ai~-~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~-g~-------e~all-  167 (476)
T PLN02955        101 FKKLLLFSGNDY---LGLSSHPTISNAAANAAK-EYGMGPKGSALICGYTTYHRLLESSLADLK-KK-------EDCLV-  167 (476)
T ss_pred             CceEEEeeccCc---cCCCCCHHHHHHHHHHHH-HcCCCCCCcCccccChHHHHHHHHHHHHHH-CC-------CcEEE-
Confidence            358899999988   676667777777777775 11111 00001233    478999999988 54       67777 


Q ss_pred             ecCCcccHHHHHHHHHHh------------hcCCCeEEecCCCCCChHHHHhhc----CceeeEEEeecCCCCCcChhhH
Q 015435          105 QCLSGTGSLRVGAEFLAR------------HYHQLTIYIPQPTWGNHPKVFTLA----GLSVKTYRYYDPATRGLNFQGL  168 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~------------~~~gd~Vi~~~p~y~~~~~~~~~~----G~~~~~v~~~~~~~~~~d~~~l  168 (407)
                       .++|..|...++..+..            ..++|.|++..-.|.+..+.++..    +.+++.++.       .|++.|
T Consensus       168 -~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~L  239 (476)
T PLN02955        168 -CPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-------CDMYHL  239 (476)
T ss_pred             -ECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-------CCHHHH
Confidence             88888877776433310            124456777677888888888766    466766655       378899


Q ss_pred             HHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEE
Q 015435          169 LEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVA  248 (407)
Q Consensus       169 ~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~  248 (407)
                      ++.+.+.+....++++....++.|.+.+   +++|.++|++||++||+||+|..+..+.....  ....+.-..+..+++
T Consensus       240 e~~L~~~~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G--~~e~~g~~~di~ii~  314 (476)
T PLN02955        240 NSLLSSCKMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGG--VAEEFNCEADVDLCV  314 (476)
T ss_pred             HHHHHhCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCc--HHHHhCCCCCCcEEE
Confidence            9888654443444554666888899776   77777779999999999999987776531111  112222235778999


Q ss_pred             EecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcc-cCCC-ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          249 QSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPM-YSSP-PIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       249 ~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                      +||||.+|..|   |++  +++ +++.+    .+....+.. ++++ ++....++.+.++..       ..-..+++++.
T Consensus       315 ~TLsKA~G~~G---Gfi--~gs-~~~~~----~l~~~~~~~ifStalpp~~aaa~laal~l~-------~~~~~~r~~L~  377 (476)
T PLN02955        315 GTLSKAAGCHG---GFI--ACS-KKWKQ----LIQSRGRSFIFSTAIPVPMAAAAYAAVVVA-------RKEKWRRKAIW  377 (476)
T ss_pred             EeCccchhccC---cee--ecH-HHHHH----HHHHhCCCCeecccccHHHHHHHHHHHHHH-------hcCHHHHHHHH
Confidence            99999987665   887  454 44444    343332222 2222 322333343344321       11124667788


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCceeEE-ecCCCHH--HHHHhHhhccEEEcCC-------C----eEEecC-CCCCC
Q 015435          327 SMRQQLFDALSARGTPGDWSHIIKQIGMFT-FTGLNSE--QVAFMTKEYHIYMTSD-------G----RISMAG-LSSKT  391 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~l~~~gi~~~~g-------g----Ris~~~-~~~e~  391 (407)
                      ++.+++.+.   .|    +...   ..++. +++-...  .+.+.|.++||.+.+.       |    ||++.. ++++|
T Consensus       378 ~n~~~fr~~---~G----~~~~---sPI~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~ed  447 (476)
T PLN02955        378 ERVKEFKAL---SG----VDIS---SPIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTED  447 (476)
T ss_pred             HHHHHHHHh---cC----CCCC---CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHH
Confidence            888888873   34    3321   23332 2333222  2445566689998642       2    888764 68899


Q ss_pred             hhHHHHHHHHHHHhh
Q 015435          392 VPHLTDAIHAAVTRM  406 (407)
Q Consensus       392 i~~~~~~l~~~l~~~  406 (407)
                      |+++++.|.++.+.+
T Consensus       448 Id~lv~~L~~~~~~~  462 (476)
T PLN02955        448 VKKLITALSSCLDFD  462 (476)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999887654

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.88  E-value=2.3e-20  Score=178.28  Aligned_cols=348  Identities=13%  Similarity=0.079  Sum_probs=204.8

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC-CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY-LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++++++++.+++. .....+.. .......++.+++++.+......   .+.+.+ .
T Consensus        31 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~-~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~---~~~~~f-~  104 (412)
T TIGR02407        31 DEDGKEYIDFFAGAGALNYG-HNNPKLKQALIDYLA-DDGIIHSLDMATEAKREFLETFNEIILKPRGL---DYKVQF-P  104 (412)
T ss_pred             eCCCCEEEEcccchhhccCC-CCCHHHHHHHHHHHh-hccceeccccCcHHHHHHHHHHHHhccCccCC---CceEEE-e
Confidence            34678999999997655667 667788888888875 11111111 01112233444444433111101   124545 0


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-C------------ceeeEEEeecCCCC-CcChhhHHHH
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-G------------LSVKTYRYYDPATR-GLNFQGLLED  171 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G------------~~~~~v~~~~~~~~-~~d~~~l~~~  171 (407)
                      ++||++|++.++++.+......+|+...-+|++........ |            ..+..+|..+.... .-+++.+++.
T Consensus       105 ~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~  184 (412)
T TIGR02407       105 GPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKL  184 (412)
T ss_pred             CCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHH
Confidence            58999999999988877655568999898888776543321 1            12233332110000 0236667777


Q ss_pred             HHcCC----CCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          172 LRAAP----SGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       172 i~~~~----~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      +.+..    +..++++ ...++++|. .++.+.+++|.++|++||+++|+||++.+|+..+   ..+....+.- ..+  
T Consensus       185 ~~~~~~~~~~~aavi~-Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~a~~~~~v-~PD--  257 (412)
T TIGR02407       185 LEDSSSGVDLPAAVIL-ETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG---TFFSFEPAGI-EPD--  257 (412)
T ss_pred             HHhccCCCCceEEEEe-ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhHHhcccCC-CCC--
Confidence            76321    2345555 556778888 5899999999999999999999999999887654   2222222211 122  


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC-hhhHHhHHHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD-STMYKEWTLELKAMADRI  325 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~  325 (407)
                       +.+++|.++..|+|+|++  +++ ++    + ..+.......+++.+++++.++.+.++. ..        -.+..+++
T Consensus       258 -i~~~~K~lg~~G~pigav--~~~-~~----~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~--------~~~l~~~~  320 (412)
T TIGR02407       258 -IVCLSKSISGYGLPLALT--LIK-PE----L-DVWKPGEHNGTFRGNNLAFVTATAALEYYWS--------DDAFEKAV  320 (412)
T ss_pred             -EEEechhccCCccceeEE--EEc-hh----h-hccCCCccCCCCCccHHHHHHHHHHHHHHhc--------ccHHHHHH
Confidence             235789998339999999  565 22    2 2222222334456677766665555542 11        01233444


Q ss_pred             HHHHHHHHHHHHhcC--CCCCcccccCCceeEEecCCCH----HHHHHhHhhccEEEcCCC------eEEecC-CCCCCh
Q 015435          326 ISMRQQLFDALSARG--TPGDWSHIIKQIGMFTFTGLNS----EQVAFMTKEYHIYMTSDG------RISMAG-LSSKTV  392 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gi~~~~gg------Ris~~~-~~~e~i  392 (407)
                      +++.+++.+.++.+-  .+. ........|++.|+.+..    ..+...+.++||.+.+.+      ||+..- ++++++
T Consensus       321 ~~~g~~l~~~l~~l~~~~~~-~~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i  399 (412)
T TIGR02407       321 QRKSEIIQERLDRIVAEYPE-LIKQVRGRGLMQGIECGDGDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETL  399 (412)
T ss_pred             HHHHHHHHHHHHHHHhhCCC-ceEeeecceeEEEEEecChHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHH
Confidence            445555555544321  000 112234457787876632    234455566899997643      776553 588999


Q ss_pred             hHHHHHHHHHHHh
Q 015435          393 PHLTDAIHAAVTR  405 (407)
Q Consensus       393 ~~~~~~l~~~l~~  405 (407)
                      ++++++|.+++++
T Consensus       400 ~~~~~~l~~~l~~  412 (412)
T TIGR02407       400 QQGLDILEQAVEE  412 (412)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998864

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.88  E-value=1.1e-19  Score=172.43  Aligned_cols=278  Identities=14%  Similarity=0.150  Sum_probs=182.6

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~  148 (407)
                      +.....+|++.++++. +.       +++++  ++||++|+.+++  ...+.+||+|++++|+|..+..    .+...|+
T Consensus        63 ~~pt~~~Le~~lA~l~-g~-------~~~l~--~~sgt~Ai~~~l--~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi  130 (394)
T PRK07050         63 ATPTSLALAQRLAEIE-GG-------RHALL--QPSGLAAISLVY--FGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGI  130 (394)
T ss_pred             CCHHHHHHHHHHHHHh-CC-------CeEEE--eccHHHHHHHHH--HHHhCCCCEEEEecCCcccHHHHHHHHHHhcCe
Confidence            3455788888888877 43       68999  999999999995  4448899999999999998764    4457799


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++..       +.+++++.+.  +++++|++ ++|+||||.   ..++++|+++|+++|+++|+|++|.....-  
T Consensus       131 ~v~~vd~~-------~~~~l~~~i~--~~tklV~l-e~p~Np~~~---~~di~~I~~ia~~~gi~livD~a~a~~~~~--  195 (394)
T PRK07050        131 TVRFYDPL-------IGAGIADLIQ--PNTRLIWL-EAPGSVTME---VPDVPAITAAARARGVVTAIDNTYSAGLAF--  195 (394)
T ss_pred             EEEEECCC-------CHHHHHHhcC--CCCeEEEE-ECCCCCCcc---HhhHHHHHHHHHHcCCEEEEECCccccccc--
Confidence            88887531       3467888876  67788777 899999976   789999999999999999999998654321  


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccc-cCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGL-YGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                        .  +.    . ....+++.|++|.++. .+.+.|++  ++.++++.+++.    ........+.++.....+...+++
T Consensus       196 --~--~l----~-~GaDi~v~S~tK~~~g~~~~~gG~v--~~~~~~~~~~~~----~~~~~~G~~~~~~~a~l~lr~l~t  260 (394)
T PRK07050        196 --K--PF----E-HGVDISVQALTKYQSGGSDVLMGAT--ITADAELHAKLK----LARMRLGIGVSADDCSLVLRGLPS  260 (394)
T ss_pred             --C--HH----H-cCCeEEEEECCceecCCCCeeEEEE--EECCHHHHHHHH----HHHHhcCCCCCHHHHHHHHcCCCc
Confidence              0  11    1 1246889999999973 33467888  577766555443    333333335555555555444443


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCC-----ccc----ccCCceeEEec-CC--CHHHHHHhH
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGT------PGD-----WSH----IIKQIGMFTFT-GL--NSEQVAFMT  369 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~-----~~~----~~~~~~~~~~~-~~--~~~~~~~~l  369 (407)
                      .          ..+.++..++...+.+.|++.+.      |..     +..    ....+++|.+. ..  +.+.+.+++
T Consensus       261 l----------~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~  330 (394)
T PRK07050        261 L----------QVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFV  330 (394)
T ss_pred             H----------HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHH
Confidence            2          33445555666677777776531      110     000    01235555544 22  334343333


Q ss_pred             ---hhccEEEcCC-----------------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          370 ---KEYHIYMTSD-----------------------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       370 ---~~~gi~~~~g-----------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                         +..++.+.=|                       +  |||++-   |+.+.+++-|.++|+.
T Consensus       331 ~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl---E~~~dl~~dl~~al~~  391 (394)
T PRK07050        331 EALELFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGL---EDEADLIADLEQALEA  391 (394)
T ss_pred             HcCCCCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCc---CCHHHHHHHHHHHHHH
Confidence               3334322211                       2  788773   8899999999998875

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.87  E-value=4.8e-20  Score=174.53  Aligned_cols=327  Identities=13%  Similarity=0.053  Sum_probs=190.5

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc-----ccccCC------CCCCcHHHHHHHHHHHhCCCCCCCCC
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS-----RVKEYL------PIVGLVDFNKLSAKLILGADSPAIKD   98 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~y~------~~~g~~~l~~~~a~~~~~~~~~~~~~   98 (407)
                      ..+.|||++..|.   +....+++.+++.+.+.+-..     ..+..+      ...-+.++++.+++++ +..      
T Consensus         3 ~~~~~~~~s~~YL---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~-~~~------   72 (370)
T PRK05937          3 ESLSIDFVTNDFL---GFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFH-GAP------   72 (370)
T ss_pred             CCceEEeECCCcc---CCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHh-CCC------
Confidence            3679999999984   444556666666666641100     011111      1223788899999988 431      


Q ss_pred             CceEEeecCCcccHHHHHHHHHHhh-cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC--
Q 015435           99 NRVTTVQCLSGTGSLRVGAEFLARH-YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--  175 (407)
Q Consensus        99 ~~i~~~~t~g~t~a~~~~~~~~~~~-~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--  175 (407)
                      +.+++  ++|. .++..+   ...+ .+||.|++..-.|......+.......+.++.       .|++++++.+.+.  
T Consensus        73 ~~l~~--~sG~-~a~~~~---~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~~  139 (370)
T PRK05937         73 EAFIV--PSGY-MANLGL---CAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRH-------NDLDHLESLLESCRQ  139 (370)
T ss_pred             eEEEE--CChH-HHHHHH---HHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHhhhc
Confidence            33444  5544 555433   2233 46777777777777777776654433333322       5889999988632  


Q ss_pred             -CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435          176 -PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN  254 (407)
Q Consensus       176 -~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
                       +++..++++++++|+||.+.+   +++|+++|+++|+++++|++|+....+ .+.... ...+ ...+..+.+.||||.
T Consensus       140 ~~~~~~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g-~~g~g~-~~~~-~~~~~~~~~~tlsK~  213 (370)
T PRK05937        140 RSFGRIFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFG-DDGKGF-CHSL-GYENFYAVLVTYSKA  213 (370)
T ss_pred             cCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccC-CCCCch-HHhh-CCCCCcEEEEechhh
Confidence             123334444899999999886   778888899999999999999753332 111111 1111 112233678999999


Q ss_pred             ccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          255 MGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       255 ~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                      +|..|.  | +  +.. ++..+.+........  ...+.+.....++..+++-.      .+..+..++++++.++++.+
T Consensus       214 ~g~~G~--~-v--l~~-~~~~~~~~~~~~~~~--~s~~~~~~~~~a~~aal~~l------~~~~~~~~~~l~~l~~~l~~  279 (370)
T PRK05937        214 LGSMGA--A-L--LSS-SEVKQDLMLNSPPLR--YSTGLPPHLLISIQVAYDFL------SQEGELARKQLFRLKEYFAQ  279 (370)
T ss_pred             hhcCce--E-E--EcC-HHHHHHHHHhCCCCe--ecCCCCHHHHHHHHHHHHHH------HhCcHHHHHHHHHHHHHHHH
Confidence            987663  2 3  243 333333332111111  11234444444444444311      11123456777888888887


Q ss_pred             HHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCC-----C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          335 ALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD-----G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       335 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g-----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+...+.    ....    .+.+.+...+.+.+.|+++||.+...     +  |+++.. .+++|++++++.|+++++++
T Consensus       280 ~l~~~~~----~~~~----~i~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~  351 (370)
T PRK05937        280 KFSSAAP----GCVQ----PIFLPGISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKY  351 (370)
T ss_pred             hcCCCCC----CCEE----EEEeCChhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence            7754321    1011    12223445556667777789988632     2  999864 48899999999999998765


Q ss_pred             C
Q 015435          407 G  407 (407)
Q Consensus       407 ~  407 (407)
                      |
T Consensus       352 ~  352 (370)
T PRK05937        352 Q  352 (370)
T ss_pred             C
Confidence            3

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.87  E-value=7.4e-20  Score=176.28  Aligned_cols=347  Identities=12%  Similarity=0.027  Sum_probs=210.2

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc-CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE-YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++++++++.+++. .....+. +.+.....++.+++++...+ ...  ...-+++  
T Consensus        35 D~dG~~ylD~~~g~~~~~lG-h~~p~i~~ai~~q~~-~~~~~~~~~~~~~~~~~lae~L~~~~p~-~~~--~~~~~f~--  107 (442)
T TIGR00709        35 DVEGKEYLDFLAGAGTLALG-HNHPNMKQKILDYLQ-SGLPLHTLDLTTPLKDAFIEALLNIIPK-RKM--DYKLQFP--  107 (442)
T ss_pred             eCCCCEEEEccccHhhhcCC-CCCHHHHHHHHHHHH-hccCccccccCcHHHHHHHHHHHHhCCC-cCC--CccEEEe--
Confidence            45678999999997766677 667788888888886 1111111 12233334455555554411 000  0123455  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-C------------ceeeEEEeecCCCC--C----cCh-
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-G------------LSVKTYRYYDPATR--G----LNF-  165 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G------------~~~~~v~~~~~~~~--~----~d~-  165 (407)
                      ++||++|++.++++.+......+|+...-+|++........ |            ..+..++..+....  +    .+. 
T Consensus       108 ~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (442)
T TIGR00709       108 GPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSN  187 (442)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHH
Confidence            79999999999988877755567998898888876544422 1            01222322111000  0    011 


Q ss_pred             ---hhHHHHHHc---C-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH
Q 015435          166 ---QGLLEDLRA---A-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF  238 (407)
Q Consensus       166 ---~~l~~~i~~---~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~  238 (407)
                         +.+++.+.+   . .+..++++.+.++|+....++++.+++|.++|++||+++|.||++.+|++.+   +.+....+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~a~~~~  264 (442)
T TIGR00709       188 ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG---TMFAFEHA  264 (442)
T ss_pred             HHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC---chhHHHHc
Confidence               113333321   1 3456677766666665566899999999999999999999999999998764   34444433


Q ss_pred             HHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435          239 VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLEL  318 (407)
Q Consensus       239 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  318 (407)
                      . -..++++   ++|.++. |+++|++  +++ +++ +    .+.......+++.+++++.++.+.|+...        -
T Consensus       265 g-v~PDiv~---~gK~l~~-G~Pigav--~~~-~~~-~----~~~~~~~~~T~~gnpla~aaa~a~L~~i~--------~  323 (442)
T TIGR00709       265 G-IEPDFVV---MSKAVGG-GLPLAVL--LIA-PEF-D----AWQPAGHTGTFRGNQLAMVTGTEALNYWK--------D  323 (442)
T ss_pred             C-CCCcEEE---EcccccC-CcccEEE--EEc-hHH-h----ccCCCcCCCCCCcCHHHHHHHHHHHHHHH--------h
Confidence            2 2233343   7999995 8999999  565 222 2    22112223456788999999988886321        1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC--CCCCcccccCCceeEEe--cCC------------C---HHHHHHhHhhccEEEcCC
Q 015435          319 KAMADRIISMRQQLFDALSARG--TPGDWSHIIKQIGMFTF--TGL------------N---SEQVAFMTKEYHIYMTSD  379 (407)
Q Consensus       319 ~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~--~~~------------~---~~~~~~~l~~~gi~~~~g  379 (407)
                      +.+.++++++.+++.+.|+++-  .+ .+..+...|.++.+  ..-            +   ...+...+.++|+.+.+.
T Consensus       324 ~~l~~~~~~~g~~l~~~L~~l~~~~~-~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~  402 (442)
T TIGR00709       324 DNLAQNAQERGERITSFLDDMIKEHP-CIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETG  402 (442)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhCC-CeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeec
Confidence            2445677777788887777642  11 12222334444332  110            0   122344455689998764


Q ss_pred             ---C---eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          380 ---G---RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       380 ---g---Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                         +   |+...- +++++++.+++++.+++++
T Consensus       403 ~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~  435 (442)
T TIGR00709       403 GREGEVFRLLCPITIDQEECEEGISRFKQAVEE  435 (442)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence               3   665443 5889999999999998865

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.87  E-value=7.1e-20  Score=175.78  Aligned_cols=349  Identities=13%  Similarity=0.114  Sum_probs=206.1

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC-CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY-LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++++++++.+++.+ ....+.. .......++.+++++.+......   .+.+.+ .
T Consensus        35 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~~-~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~---~~~~~f-~  108 (425)
T PRK09264         35 DEDGKEYIDFFAGAGALNYG-HNNPVLKQALIDYLQR-DGITHGLDMHTTAKREFLETFEETILKPRGL---DYKVQF-T  108 (425)
T ss_pred             eCCCCEeeecccchhhccCC-CCCHHHHHHHHHHHHh-cccccccccCcHHHHHHHHHHHHhhcCCcCC---CceEEE-e
Confidence            45678999999997666677 6677888888888761 1111111 11222334445555543111111   124545 0


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc----------Cc---eeeEEEeecCCC-CCcChhhHHHH
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA----------GL---SVKTYRYYDPAT-RGLNFQGLLED  171 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~----------G~---~~~~v~~~~~~~-~~~d~~~l~~~  171 (407)
                      ++||++|++.++++.+......+|+....+|++........          |.   .+..+|..+... ..-|++++++.
T Consensus       109 ~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~  188 (425)
T PRK09264        109 GPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKL  188 (425)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHH
Confidence            48999999999988877755567888888888775432211          11   233344311100 01266778888


Q ss_pred             HHcCC----CCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          172 LRAAP----SGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       172 i~~~~----~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      +.+..    ...++++- ....-.|. +++.+.+++|.++|++||+++|+||++.+|+..+   ..+....+. -..++ 
T Consensus       189 l~~~~~~~~~~aavi~E-pv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG---~~~~~~~~~-v~PDi-  262 (425)
T PRK09264        189 LEDSSSGVDLPAAVIVE-TVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTG---TFFSFERAG-ITPDI-  262 (425)
T ss_pred             HHhccCCCCceEEEEEe-cccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCcccc---HHHHHhhcC-CCCCE-
Confidence            86421    23455553 33444565 5789999999999999999999999999887654   233332221 12232 


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                        .+++|.++..|+++|++  +++ ++    +. .+.......+++.+++++.++.+.++..     +.  -....++++
T Consensus       263 --~t~~K~l~~~G~pigav--~~~-~~----i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~-----~~--~~~l~~~~~  325 (425)
T PRK09264        263 --VTLSKSISGYGLPMALV--LIK-PE----LD-VWKPGEHNGTFRGNNLAFVTATAALEEY-----WS--DDAFEKEVK  325 (425)
T ss_pred             --EEeccccCCCccceEEE--EEc-hh----hh-ccCCCccCCCCCCCHHHHHHHHHHHHHH-----Hh--hhHHHHHHH
Confidence              36789999559999999  566 32    21 2222222234456667777666666321     11  123455666


Q ss_pred             HHHHHHHHHHHhcC--CCCCcccccCCceeEEecCCCH----HHHHHhHhhccEEEcCCC----eEEec-C--CCCCChh
Q 015435          327 SMRQQLFDALSARG--TPGDWSHIIKQIGMFTFTGLNS----EQVAFMTKEYHIYMTSDG----RISMA-G--LSSKTVP  393 (407)
Q Consensus       327 ~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gi~~~~gg----Ris~~-~--~~~e~i~  393 (407)
                      ++.+++.+.|+++.  .+. +.......|++.++.+..    ..+...+.++||.+.+.+    ||.+. .  +++++++
T Consensus       326 ~~g~~l~~~l~~l~~~~~~-~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~  404 (425)
T PRK09264        326 AKGELVRERLEEIAAKYPG-LGAEVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELE  404 (425)
T ss_pred             HHHHHHHHHHHHHHHhCCC-ceecceecccEEEEEecChHHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHH
Confidence            66677766665541  110 111122345666665522    234455556899997754    55544 1  4789999


Q ss_pred             HHHHHHHHHHHh
Q 015435          394 HLTDAIHAAVTR  405 (407)
Q Consensus       394 ~~~~~l~~~l~~  405 (407)
                      +++++|.+++++
T Consensus       405 ~~~~~l~~~l~~  416 (425)
T PRK09264        405 EGLDILEEAVAE  416 (425)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998865

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.87  E-value=1.1e-19  Score=172.66  Aligned_cols=216  Identities=14%  Similarity=0.095  Sum_probs=153.5

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCCh----HHHHhhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNH----PKVFTLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~----~~~~~~~G~  148 (407)
                      +.....+|++.++++. +.       ++.++  +++|+.++..++  ...+.+||+|+++...|.+.    ...++..|+
T Consensus        68 ~~p~~~~le~~lA~l~-g~-------~~al~--~~sG~~Ai~~~l--~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~  135 (403)
T PRK07810         68 GNPTVSMFEERLRLIE-GA-------EACFA--TASGMSAVFTAL--GALLGAGDRLVAARSLFGSCFVVCNEILPRWGV  135 (403)
T ss_pred             CCchHHHHHHHHHHHh-CC-------CcEEE--ECChHHHHHHHH--HHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc
Confidence            4455789999999988 53       57888  999999999874  45578999999998666443    445667899


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++.       .|++++++++.  +++++|++ .+|+||||.+.   ++++|+++|+++|+++|+|++|+...... 
T Consensus       136 ~v~~vd~-------~d~~~l~~ai~--~~tklV~~-esp~Nptg~v~---dl~~I~~la~~~g~~vivD~a~a~~~~~~-  201 (403)
T PRK07810        136 ETVFVDG-------EDLSQWEEALS--VPTQAVFF-ETPSNPMQSLV---DIAAVSELAHAAGAKVVLDNVFATPLLQR-  201 (403)
T ss_pred             EEEEECC-------CCHHHHHHhcC--cCceEEEE-ECCCCCCCeec---CHHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            9988854       38899999887  66788777 89999999976   58888888999999999999987554321 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                           +.    . ....+++.|++|.++.+|.++ |++  +++++...+++    ....+......+...+..+...|+.
T Consensus       202 -----~~----~-~gaDivv~S~tK~l~g~g~~~gG~v--~~~~~~~~~~l----~~~~~~~g~~~s~~~a~l~l~~L~t  265 (403)
T PRK07810        202 -----GL----P-LGADVVVYSGTKHIDGQGRVLGGAI--LGDREYIDGPV----QKLMRHTGPALSAFNAWVLLKGLET  265 (403)
T ss_pred             -----hh----h-cCCcEEEccCCceecCCcCceeEEE--EeChHHHHHHH----HHHHHHhCCCCCHHHHHHHHhccCc
Confidence                 11    1 134688899999999889988 555  45433222222    2222233335566666666555543


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                                +..+.++..++...+.+.|++.+
T Consensus       266 ----------l~~R~~~~~~~a~~~a~~L~~~p  288 (403)
T PRK07810        266 ----------LALRVRHSNASALRIAEFLEGHP  288 (403)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHhcCC
Confidence                      44555666677777888888764

>PRK14012 cysteine desulfurase; Provisional

Probab=99.87  E-value=9.7e-20  Score=174.64  Aligned_cols=289  Identities=16%  Similarity=0.145  Sum_probs=181.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh--hcCCCeEEecCCCCCChHHHHh---hcCcee
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR--HYHQLTIYIPQPTWGNHPKVFT---LAGLSV  150 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~--~~~gd~Vi~~~p~y~~~~~~~~---~~G~~~  150 (407)
                      ...++|+.+++++ +.     +++++++  ++|+|+++.+++..+..  ..+||+|+++.++|+.....+.   ..|+++
T Consensus        50 ~~~~~r~~ia~~~-g~-----~~~~v~~--~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~  121 (404)
T PRK14012         50 AVDIARNQIADLI-GA-----DPREIVF--TSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEV  121 (404)
T ss_pred             HHHHHHHHHHHHc-Cc-----CcCeEEE--eCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEE
Confidence            3667788888877 43     2467999  99999999988543321  3689999999999988766554   459999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++.+  .++.+|++++++.+.  ++++++++ ++++||||.+.   ++++|.++|+++|+++|+|++++.... ..  
T Consensus       122 ~~v~~~--~~g~~d~~~l~~~i~--~~t~lv~~-~~~~n~tG~~~---~~~~I~~la~~~g~~vivD~a~~~g~~-~~--  190 (404)
T PRK14012        122 TYLDPQ--SNGIIDLEKLEAAMR--DDTILVSI-MHVNNEIGVIQ---DIAAIGEICRERGIIFHVDAAQSVGKV-PI--  190 (404)
T ss_pred             EEEccC--CCCcCCHHHHHHhcC--CCCEEEEE-ECcCCCccchh---hHHHHHHHHHHcCCEEEEEcchhcCCc-cc--
Confidence            999883  456789999999997  56676666 89999999966   578888899999999999999753221 11  


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh---hhcccCCCChhHHHHHHHHhcC
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV---IRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                      +   +    ...+..+++.|++|.+| |+ ++|++  +++++.. .++.......   .+....+++.........+++.
T Consensus       191 ~---~----~~~~~D~~~~s~~K~~g-p~-g~G~l--~~~~~~~-~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~  258 (404)
T PRK14012        191 D---L----SKLKVDLMSFSAHKIYG-PK-GIGAL--YVRRKPR-VRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARI  258 (404)
T ss_pred             C---c----ccCCCCEEEEehhhccC-CC-ceEEE--EEecCCC-CCCCceecCCCccCCccCCCcCHHHHHHHHHHHHH
Confidence            1   1    11234567779999876 43 57887  4553321 1111100000   0011112233333333333322


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-----CCceeEEecC-CCHHHHHHhHhhccEEEcCC--
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII-----KQIGMFTFTG-LNSEQVAFMTKEYHIYMTSD--  379 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~g--  379 (407)
                      ..      ...+...++.++.++++.+.|+++..   +....     ....++.+.. .+.+.+...|+  ++.+..+  
T Consensus       259 ~~------~~~~~~~~~~~~l~~~l~~~L~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~i~~g~~  327 (404)
T PRK14012        259 AK------EEMATENERIRALRDRLWNGIKDIEE---VYLNGDLEQRVPGNLNVSFNYVEGESLIMALK--DLAVSSGSA  327 (404)
T ss_pred             HH------hhHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCccccCCCEEEEEEeCcCHHHHHHhCC--CeEEEchhh
Confidence            11      22445567778888888888876542   22211     1122233333 34444444444  3333221  


Q ss_pred             -----------------------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          380 -----------------------G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 -----------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                                             +  |+++.. .+++|++++++.|+++++.+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~  380 (404)
T PRK14012        328 CTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKL  380 (404)
T ss_pred             hCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence                                   2  898876 57899999999999988654

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.87  E-value=8.5e-20  Score=170.49  Aligned_cols=347  Identities=15%  Similarity=0.112  Sum_probs=226.2

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++.+|||..|+...+.| ..++.+++++.+++..-......|.+.....++.+++.+...+.     ..+.+++  +
T Consensus        52 DvdG~~ylDf~sgi~v~~~G-H~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~-----~~~~~~f--~  123 (447)
T COG0160          52 DVDGNEYLDFLSGIAVLNLG-HNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGS-----GLKKVFF--G  123 (447)
T ss_pred             eCCCCEEEEcccCcchhccC-CCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcc-----cCCeEEe--c
Confidence            45689999999987656777 77889999998888621112233433344556677777766321     1378999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-h-------------cCceeeEEEeecCCCC--Cc-------
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-L-------------AGLSVKTYRYYDPATR--GL-------  163 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~-------------~G~~~~~v~~~~~~~~--~~-------  163 (407)
                      ++|++|+++++++.+.......||...-+|++...... .             ..-.+..+|..++...  +.       
T Consensus       124 ~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~  203 (447)
T COG0160         124 NSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGD  203 (447)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhH
Confidence            99999999999998888777899999988876543222 1             1113555665332211  11       


Q ss_pred             -ChhhHHHHHHc---CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH
Q 015435          164 -NFQGLLEDLRA---APSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF  238 (407)
Q Consensus       164 -d~~~l~~~i~~---~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~  238 (407)
                       ..+.+++.+..   .+...+.+|+-.-+...|.+ .|++.++++.++|++||+++|+||+..+++..|   +.|.+..+
T Consensus       204 ~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG---~~fa~E~~  280 (447)
T COG0160         204 DALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG---KMFAFEHF  280 (447)
T ss_pred             HHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---cchhhhhc
Confidence             12334443322   23344444434445556665 788899999999999999999999999999886   56666655


Q ss_pred             HHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435          239 VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLEL  318 (407)
Q Consensus       239 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  318 (407)
                      .-. .+++   +++|.++ .|+++|.+  +..     +++.+ ........++..+++++.++.+.|+-.+        -
T Consensus       281 gv~-PDiv---t~aK~ig-~G~Pl~av--v~r-----~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie--------~  339 (447)
T COG0160         281 GVE-PDIV---TLAKSLG-GGLPLSAV--VGR-----AEIMD-WPPGGHGGTFGGNPVACAAALAVLDVIE--------E  339 (447)
T ss_pred             CCC-CCEE---Eeccccc-CCCceeEE--ecc-----HHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHHH--------H
Confidence            332 2333   3799999 59999999  565     44544 2223334456889999999888887332        2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCC-CcccccCCceeEEecCC---------CHH---HHHHhHhhccEEEcCCC-----
Q 015435          319 KAMADRIISMRQQLFDALSARGTPG-DWSHIIKQIGMFTFTGL---------NSE---QVAFMTKEYHIYMTSDG-----  380 (407)
Q Consensus       319 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~---~~~~~l~~~gi~~~~gg-----  380 (407)
                      +.+.++..+.-+++.+.|.++.... .+--+...| ++.-+.+         +.+   .+...+.++|+.+..+|     
T Consensus       340 e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~G-lm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nv  418 (447)
T COG0160         340 ENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLG-LMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNV  418 (447)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhcCceecccccc-eEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcE
Confidence            2566777788888888887653210 011122223 3332311         222   34444555898888766     


Q ss_pred             -eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 -RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 -Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                       ||...- +++++++.+++.|.+++++.
T Consensus       419 iRi~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         419 LRILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             EEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence             886542 58899999999999999764

>PRK05939 hypothetical protein; Provisional

Probab=99.86  E-value=7.2e-19  Score=166.65  Aligned_cols=277  Identities=18%  Similarity=0.164  Sum_probs=180.2

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhhcCceeeEE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTLAGLSVKTY  153 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~~G~~~~~v  153 (407)
                      ...|.++++++. +.       +..++  +++|+.|+..++  ...+.+||+|+++++.|+.+..   .+...|++++.+
T Consensus        49 ~~~lE~~la~le-g~-------~~~v~--~ssG~~Ai~~~l--~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v  116 (397)
T PRK05939         49 TAALEAKITKME-GG-------VGTVC--FATGMAAIAAVF--LTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMV  116 (397)
T ss_pred             HHHHHHHHHHHh-CC-------CeEEE--eCCHHHHHHHHH--HHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEE
Confidence            448888899877 43       34555  777799999884  4558899999999999987654   455789999888


Q ss_pred             EeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccccc-CCCCCchh
Q 015435          154 RYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFA-SGSLDADA  232 (407)
Q Consensus       154 ~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~-~~~~~~~~  232 (407)
                      +.       .|++++++.+.  ++++++++ ++|+||||.+   .++++|+++|+++|+++|+|++|.... ++.     
T Consensus       117 ~~-------~d~e~l~~~l~--~~tklV~v-esp~NptG~v---~dl~~I~~la~~~gi~livD~t~a~~~~~~~-----  178 (397)
T PRK05939        117 DA-------TDVQNVAAAIR--PNTRMVFV-ETIANPGTQV---ADLAGIGALCRERGLLYVVDNTMTSPWLFRP-----  178 (397)
T ss_pred             CC-------CCHHHHHHhCC--CCCeEEEE-ECCCCCCCCH---HhHHHHHHHHHHcCCEEEEECCcccccccCc-----
Confidence            65       37899999887  67788777 8999999995   689999999999999999999975322 110     


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChh--------hHHHH---------HHHHh-hhhhcccCCCC
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTED--------VASRV---------ESQLK-LVIRPMYSSPP  294 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~--------~~~~~---------~~~~~-~~~~~~~~~~~  294 (407)
                             ......+++.|+||.++.+|.++|++  ++.+..        ....+         ...+. ...+......+
T Consensus       179 -------~~~gaDivv~S~sK~~~g~g~~igg~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  249 (397)
T PRK05939        179 -------KDVGASLVINSLSKYIAGHGNALGGA--VTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLS  249 (397)
T ss_pred             -------cccCCEEEEecCeecccCCCCeEEEE--EecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCC
Confidence                   11245799999999999999999998  454221        11100         11111 11112222334


Q ss_pred             hhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---------------ccCCceeEEecC
Q 015435          295 IHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH---------------IIKQIGMFTFTG  359 (407)
Q Consensus       295 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~  359 (407)
                      +.....+..-++          .+..+.++..++...+.+.|++.+.-..+.+               ....|+++.+.=
T Consensus       250 p~~a~l~~rgl~----------tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~  319 (397)
T PRK05939        250 SEAAHRIAIGAE----------TLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFEL  319 (397)
T ss_pred             HHHHHHHHcCcC----------cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEe
Confidence            444444433333          2445555666688888888887652000111               012466665431


Q ss_pred             CCHHHHHHhHhhccEEE-cC--C-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          360 LNSEQVAFMTKEYHIYM-TS--D-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       360 ~~~~~~~~~l~~~gi~~-~~--g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      -+.+.+.++++...+.. .+  |                             +  |||++-   |+.+.+++-|.++|+.
T Consensus       320 ~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGl---Ed~~dLi~dl~~Al~~  396 (397)
T PRK05939        320 ADGIDCFDFLNRLKLVIKATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGI---EDEADLIADFEQALDA  396 (397)
T ss_pred             CCHHHHHHHHHhCCcceEccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHhc
Confidence            13344555555544421 11  1                             1  888873   8899999999998864

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.86  E-value=4.6e-19  Score=169.43  Aligned_cols=157  Identities=17%  Similarity=0.168  Sum_probs=123.3

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCce
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGLS  149 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~~  149 (407)
                      ......|.+.++++. +.       ++.++  ++||++|+..++  ...+.+||+|+++.+.|.....    .++..|++
T Consensus        63 ~p~~~~Le~~lA~le-g~-------~~al~--~~sG~~Ai~~al--~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~  130 (431)
T PRK08248         63 NPTTDVFEKRIAALE-GG-------IGALA--VSSGQAAITYSI--LNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGIT  130 (431)
T ss_pred             CchHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEE
Confidence            344678888899887 43       67888  999999999884  5558899999999999876443    45578999


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                      ++.++.       .|++++++++.  ++++++++ ++|+||||.+.+   +++|+++|+++|+++|+|++|.... .   
T Consensus       131 v~~vd~-------~d~e~l~~ai~--~~tklV~l-~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~~-~---  193 (431)
T PRK08248        131 VKFVDP-------SDPENFEAAIT--DKTKALFA-ETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASPY-L---  193 (431)
T ss_pred             EEEECC-------CCHHHHHHhcC--CCCeEEEE-ECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCccc-c---
Confidence            988865       37889999887  56778777 799999999876   6788888999999999999975211 1   


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                        ..++     .....+++.|++|.++.+|.++|+++
T Consensus       194 --~~pl-----~~gaDivv~S~tK~lgg~g~~~Gg~v  223 (431)
T PRK08248        194 --LRPI-----EHGADIVVHSATKFIGGHGTSIGGVI  223 (431)
T ss_pred             --CChh-----HcCCCEEEEcCccccCCCCCceEEEE
Confidence              1111     12456888999999999999999984

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.86  E-value=6.4e-19  Score=165.76  Aligned_cols=281  Identities=13%  Similarity=0.146  Sum_probs=187.6

Q ss_pred             ccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH---
Q 015435           69 KEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF---  143 (407)
Q Consensus        69 ~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~---  143 (407)
                      ..|++  ..+...|+++++++. +.       +++++  ++||++|+..++  ...+.+||+|++++|.|.++...+   
T Consensus        53 ~~Y~r~~npt~~~Le~~iA~le-~~-------~~~~~--~~sG~~Ai~~~l--~all~~GD~Vvv~~~~Y~~t~~l~~~~  120 (394)
T PRK09028         53 MFYGRRGTPTHFAFQAAIVELE-GG-------AGTAL--YPSGAAAISNAL--LSFLKAGDHLLMVDSCYEPTRDLCDKI  120 (394)
T ss_pred             ceecCCCCchHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEECCCcHHHHHHHHHh
Confidence            44666  335679999999987 42       57888  999999999984  556889999999999998887543   


Q ss_pred             -hhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccc
Q 015435          144 -TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG  222 (407)
Q Consensus       144 -~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~  222 (407)
                       ...|+++..++.       .+.+.+++.+.  ++++++++ ++|+||||.   ..++++|+++|+++|+++|+|++|+.
T Consensus       121 l~~~Gi~v~~v~~-------~~~e~l~~~l~--~~TklV~l-espsNPtg~---v~dl~~I~~la~~~g~~lvvD~t~a~  187 (394)
T PRK09028        121 LKGFGIETTYYDP-------MIGEGIRELIR--PNTKVLFL-ESPGSITME---VQDVPTLSRIAHEHDIVVMLDNTWAS  187 (394)
T ss_pred             hhhcceEEEEECC-------CCHHHHHHhcC--cCceEEEE-ECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCccc
Confidence             457888776643       14577888876  67888777 899999988   67899999999999999999999964


Q ss_pred             ccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHH
Q 015435          223 FASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIV  301 (407)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (407)
                      ...-    .  ++     .....+++.|.+|.++.+|- -.|++   +.+++..+++    ...........++.....+
T Consensus       188 p~~~----~--Pl-----~~GaDivv~S~tK~l~Gh~d~~~G~~---~~~~~~~~~l----~~~~~~~G~~~~p~~a~l~  249 (394)
T PRK09028        188 PINS----R--PF-----EMGVDISIQAATKYIVGHSDVMLGTA---TANEKHWDQL----REHSYLMGQCTSPDDVYLA  249 (394)
T ss_pred             cccC----C--cc-----ccCceEEEEeCCeEecCCCCEEEEEE---ECCHHHHHHH----HHHHHhcCCCCCHHHHHHH
Confidence            3321    0  11     12457999999999965654 44544   5555543333    3232233335566555555


Q ss_pred             HHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Cccc----ccCCceeEEec-C-CCHHH
Q 015435          302 ATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSH----IIKQIGMFTFT-G-LNSEQ  364 (407)
Q Consensus       302 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~----~~~~~~~~~~~-~-~~~~~  364 (407)
                      ...|+.          +..+.++..++...+.+.|++.+.      |.     ..+.    ....||++.|. + -+.+.
T Consensus       250 ~rgl~T----------L~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~  319 (394)
T PRK09028        250 MRGLRT----------LGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKA  319 (394)
T ss_pred             HcccCc----------HHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHH
Confidence            544443          455667778888889999987652      10     0000    11236666654 2 23444


Q ss_pred             HHHhHhhccEEE---c----------C---------------CC--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          365 VAFMTKEYHIYM---T----------S---------------DG--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       365 ~~~~l~~~gi~~---~----------~---------------gg--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +.++++.-.+..   +          |               ++  |||++-   |+.+.+++-|.++|+.
T Consensus       320 ~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~~~~~~~~~~~~~~liR~svGl---Ed~~dLi~Dl~~Al~~  387 (394)
T PRK09028        320 VTALVEGMQHFKMGFSWGGFESLILGVFGINKLRTATNWDFSKPLIRLHIGL---EDVDDLIADLEAGFER  387 (394)
T ss_pred             HHHHHHhCCcceEecccCCCcceeECCCCcCccCchhhhcCCCCeEEEEeCc---CCHHHHHHHHHHHHHH
Confidence            555555533322   1          1               12  888873   7888888888888864

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.86  E-value=2.3e-19  Score=168.15  Aligned_cols=277  Identities=14%  Similarity=0.148  Sum_probs=184.8

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeE
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKT  152 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~  152 (407)
                      +.....+|+++++++. +.       +++++  ++||++|+.+++   ..+.+||+|+++.+.|......+...-.+. .
T Consensus        52 ~~p~~~~le~~lA~le-g~-------~~~v~--~~sG~aAi~~~l---~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~-~  117 (364)
T PRK07269         52 KNPTRAKLEETLAAIE-SA-------DYALA--TSSGMSAIVLAF---SVFPVGSKVVAVRDLYGGSFRWFNQQEKEG-R  117 (364)
T ss_pred             CCccHHHHHHHHHHHh-CC-------CeEEE--eCCHHHHHHHHH---HHhCCCCEEEEecCCcCchHHHHHHHHhcC-c
Confidence            4556889999999988 43       68988  999999999884   346899999999999987665444221110 1


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      +..    .+..|++++++++.  +++++|++ ++|+||||.+.   ++++|+++|+++|+++|+|++|......      
T Consensus       118 ~~~----~~~~d~~~l~~~i~--~~TklV~l-esP~NPtg~~~---di~~I~~la~~~gi~vvvD~t~~~~~~~------  181 (364)
T PRK07269        118 FHF----TYANTEEELIAAIE--EDTDIVYI-ETPTNPLMVEF---DIEKVAKLAHAKGAKVIVDNTFYSPIYQ------  181 (364)
T ss_pred             EEE----EecCCHHHHHHhcC--cCceEEEE-ECCCCCCCeee---CHHHHHHHHHHcCCEEEEECCCcccccC------
Confidence            111    12358899999987  67888777 99999999865   7889999999999999999997533221      


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhH
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMY  311 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  311 (407)
                      .++    . ....++++|++|.++.+|- =.|++  ++.++++.+++..    .........+......+...|+.    
T Consensus       182 ~pl----~-~gaDivv~S~tK~l~g~~d~~gG~v--~~~~~~l~~~~~~----~~~~~G~~~s~~~a~l~~~~L~t----  246 (364)
T PRK07269        182 RPI----E-LGADIVLHSATKYLSGHNDVLAGVV--VTNDLELYEKLFY----NLNTTGAVLSPFDSYLLMRGLKT----  246 (364)
T ss_pred             Cch----h-hCCcEEEecCceeccCCCcccceEE--EeCcHHHHHHHHH----HHHHhCCCCCHHHHHHHHcCCCc----
Confidence            111    1 1234899999999986554 24666  5666666555442    22222234555555555544443    


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhcc-------------EEEcC
Q 015435          312 KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYH-------------IYMTS  378 (407)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-------------i~~~~  378 (407)
                            +....++.+++...+.+.|++.+. ....+.++.||++.|.-.+.+.+.++++.-.             +.+.|
T Consensus       247 ------L~~r~~~~~~na~~~a~~L~~~p~-v~~v~ypg~gg~~sf~~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p  319 (364)
T PRK07269        247 ------LSLRMERSTANAQEVVAFLKKSPA-VKEVLYTGKGGMISFKVADETRIPHILNSLKVFTFAESLGGVESLITYP  319 (364)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHhCCC-ccEEeCCCcCcEEEEEECCHHHHHHHHHhCCcceEccCCCCcCeEeeCC
Confidence                  456667778888899999987642 0123347788888876334433333333222             22222


Q ss_pred             C---------------C------eEEecCCCCCChhHHHHHHHHHHH
Q 015435          379 D---------------G------RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       379 g---------------g------Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      .               |      |+|++-   |+.+.+++-|+++|+
T Consensus       320 ~~~~~~~~~~~~r~~~Gi~~~liRlsvGl---E~~~dli~dl~~al~  363 (364)
T PRK07269        320 TTQTHADIPAEVRHSYGLTDDLLRLSIGI---EDARDLIADLKQALE  363 (364)
T ss_pred             cccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHhc
Confidence            1               1      888873   889999999998875

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.86  E-value=2.7e-19  Score=169.86  Aligned_cols=339  Identities=12%  Similarity=0.053  Sum_probs=207.4

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++++|||..|....+.| ...+.+++++.+++.  . ..+.+.  ....+....+++.+.....    .+.+++  ++
T Consensus        33 ~dG~~~lD~~sg~~~~~lG-h~~p~v~~a~~~q~~--~-~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~f--~~  100 (395)
T PRK03715         33 HNGKRYLDFIQGWAVNCLG-HCNPGMVEALAAQAE--K-LINPSP--AFYNEPMAKLAGLLTQHSC----FDKVFF--AN  100 (395)
T ss_pred             CCCCEEEECCcChhhccCC-CCCHHHHHHHHHHHH--h-cccccc--cccCHHHHHHHHHHhhccC----CCEEEE--eC
Confidence            4578999999986655567 556777777777775  2 112111  1234566677777733211    268999  99


Q ss_pred             CcccHHHHHHHHHHhhc----CC-CeEEecCCCCCChHHHH-hhcCceee---EEEeec--CCCCCcChhhHHHHHHcCC
Q 015435          108 SGTGSLRVGAEFLARHY----HQ-LTIYIPQPTWGNHPKVF-TLAGLSVK---TYRYYD--PATRGLNFQGLLEDLRAAP  176 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~----~g-d~Vi~~~p~y~~~~~~~-~~~G~~~~---~v~~~~--~~~~~~d~~~l~~~i~~~~  176 (407)
                      ||++|++.++++.....    +| .+|+..+.+|++..... ...|....   ..|...  ......|++++++.+.  +
T Consensus       101 SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~  178 (395)
T PRK03715        101 SGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLIT--D  178 (395)
T ss_pred             CcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcC--C
Confidence            99999999988876542    23 57888888887764433 33332211   111100  0000136788888886  4


Q ss_pred             CCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          177 SGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      +..++++ ...+...|.. .+++.+++|.++|++||+++|+||++.+++..+   ..+....+.- ..+   +.+++|.+
T Consensus       179 ~~aavi~-Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG---~~~a~~~~gv-~PD---i~t~gK~l  250 (395)
T PRK03715        179 KTVAVML-EPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG---TLFAYELSGI-EPD---IMTLGKGI  250 (395)
T ss_pred             CceEEEE-eCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCc---chhhHhhcCC-CCc---eeeehhhh
Confidence            5566666 4445556665 478999999999999999999999999887654   2333222211 122   34689999


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDA  335 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (407)
                      + .|+++|.+  ++. ++    +.. +.......+++.+++++.++.+.++...        -+.+.++++++.+++.+.
T Consensus       251 g-~G~p~~av--~~~-~~----i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~--------~~~l~~~~~~~g~~l~~~  313 (395)
T PRK03715        251 G-GGVPLAAL--LAK-AE----VAV-FEAGDQGGTYNGNPLMTAVGVAVISQLL--------APGFLEGVRARGEYLKEK  313 (395)
T ss_pred             h-CCcceEEE--EEc-cc----ccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHH
Confidence            8 67999998  455 33    221 1111112344667777777777765331        134567777788888888


Q ss_pred             HHhcCCCCCcccccCCceeEEecCCC---HHHHHHhHhhc---cEEEcCCC----eEEecC-CCCCChhHHHHHHHHHHH
Q 015435          336 LSARGTPGDWSHIIKQIGMFTFTGLN---SEQVAFMTKEY---HIYMTSDG----RISMAG-LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       336 l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~---gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~~l~  404 (407)
                      |+++.....+......|.++. +.+.   ...+...+.+.   |+.+.+.+    ||+... +++++++.++++|+++++
T Consensus       314 L~~l~~~~~i~~vrG~Glm~~-i~l~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~  392 (395)
T PRK03715        314 LLELSEERGLEGERGEGLLRA-LLLGKDIGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAMLRSVLD  392 (395)
T ss_pred             HHHHhhcCCcCeEEcceeEEE-EEecCchHHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHH
Confidence            876521111332333343333 3222   23333333334   99986543    777653 588999999999999987


Q ss_pred             hh
Q 015435          405 RM  406 (407)
Q Consensus       405 ~~  406 (407)
                      ++
T Consensus       393 ~~  394 (395)
T PRK03715        393 KL  394 (395)
T ss_pred             hh
Confidence            65

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.86  E-value=4e-19  Score=167.82  Aligned_cols=283  Identities=18%  Similarity=0.158  Sum_probs=182.2

Q ss_pred             ccCCCCC--CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----
Q 015435           69 KEYLPIV--GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----  142 (407)
Q Consensus        69 ~~y~~~~--g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----  142 (407)
                      ..|+...  ....+++.+++++ +.       +++++  +++|+.++.+++   ..+.+||+|+++++.|.++...    
T Consensus        39 ~~Y~r~~~p~~~~le~~la~l~-g~-------~~~l~--~~sG~~al~~~l---~ll~~Gd~Vl~~~~~y~~~~~~~~~~  105 (378)
T TIGR01329        39 YDYTRSGNPTRTALESLLAKLD-KA-------DRAFA--FSSGMAALDVIT---RLLNNGDEIIAGDDLYGGTDRLLTQV  105 (378)
T ss_pred             CccCCCCChHHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH---HHhCCCCEEEEcCCCchHHHHHHHHH
Confidence            4465432  2567788888876 43       56777  778888888763   3578999999999999887654    


Q ss_pred             HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccc
Q 015435          143 FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG  222 (407)
Q Consensus       143 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~  222 (407)
                      +...|++++.++.       .|+++++++++  ++++++++ ++|+||||.+.   ++++|+++|+++|+++|+|+++..
T Consensus       106 ~~~~G~~v~~vd~-------~d~~~le~~i~--~~tklv~l-e~psnptg~v~---dl~~I~~la~~~g~~vivD~a~~~  172 (378)
T TIGR01329       106 VPRSGVVVVHVDT-------TDLDKVKAALG--PKTKLVLL-ESPTNPLQKIV---DIRKISEMAHAQNALVVVDNTMMS  172 (378)
T ss_pred             HHHcCcEEEEeCC-------CCHHHHHHhcC--cCceEEEE-ECCCCCCCeee---cHHHHHHHHHHcCCEEEEECCCcc
Confidence            4467999998865       27889999887  66788777 89999999976   488999999999999999999743


Q ss_pred             ccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc-CCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHH
Q 015435          223 FASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY-GERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIV  301 (407)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (407)
                      ....      .++    . ....++++|++|.++.+ +.+.|++  +++++++.+++    ...........+...+..+
T Consensus       173 ~~~~------~~l----~-~g~Di~v~S~tK~l~G~~~~~~G~v--~~~~~~~~~~~----~~~~~~~G~~~~~~~a~l~  235 (378)
T TIGR01329       173 PLLC------NPL----E-LGADIVYHSATKFLAGHSDVMAGVL--AVKGEEIAKKV----YFLQNSTGSGLAPFDCWLL  235 (378)
T ss_pred             cccC------Chh----h-cCCcEEEEecceeccCCccceeEEE--EeCcHHHHHHH----HHHHHhcCCcCCHHHHHHH
Confidence            3221      111    1 12358899999988643 4677888  56655543433    3332222223344333333


Q ss_pred             HHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Ccccc----cCCceeEEecCCCHH---
Q 015435          302 ATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSHI----IKQIGMFTFTGLNSE---  363 (407)
Q Consensus       302 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~----~~~~~~~~~~~~~~~---  363 (407)
                      ...++          .+..+.++..++...+.+.|++.+.      |.     .+...    ...++++.|.--+.+   
T Consensus       236 ~~~l~----------tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~  305 (378)
T TIGR01329       236 LRGIK----------TLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSK  305 (378)
T ss_pred             HccCC----------CHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHH
Confidence            32232          2444555666677777777775532      00     00100    123466665421222   


Q ss_pred             HHHHhHhhccEEEcCCC-------------------------------eEEecCCCCCChhHHHHHHHHHHHhhC
Q 015435          364 QVAFMTKEYHIYMTSDG-------------------------------RISMAGLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       364 ~~~~~l~~~gi~~~~gg-------------------------------Ris~~~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      .+...|+..++.++-||                               |+|++-   |+.+.+++-|+++|+..+
T Consensus       306 ~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~~~  377 (378)
T TIGR01329       306 RLVEATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI---EDVDDLISDLDIAFVTAP  377 (378)
T ss_pred             HHHHhCcCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHhcc
Confidence            23334455666665442                               888773   889999999999998654

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.86  E-value=4.4e-19  Score=170.74  Aligned_cols=346  Identities=14%  Similarity=0.098  Sum_probs=206.4

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc-cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK-EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++++++++.+++. ...... .+.+.....++.+.+++...+.     ..+.+++  
T Consensus        38 D~dG~~ylD~~~g~~~~~lG-H~~p~v~~Ai~~ql~-~~~~~~~~~~~~~~~~~lae~L~~~~p~~-----~~~~v~f--  108 (445)
T PRK08593         38 DVDGKTYIDLLASASSQNVG-HAPPRVVEAIKAQAD-KFIHYTPAYMYHEPLVRLAKKLCELAPGD-----FEKRVTF--  108 (445)
T ss_pred             eCCCCEEEECCccHHhhcCC-CCCHHHHHHHHHHHH-hccCccccccCCHHHHHHHHHHHHhCCCC-----CCCEEEE--
Confidence            45678999999886655667 667788888888875 111111 1112233445566666554111     0157999  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcC-------------ceeeEEEeecCCC--CC-cC----
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAG-------------LSVKTYRYYDPAT--RG-LN----  164 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G-------------~~~~~v~~~~~~~--~~-~d----  164 (407)
                      ++||++|++.++++.+......+|+...-+|++...... ..+             ..++.+|..+...  +. .+    
T Consensus       109 ~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  188 (445)
T PRK08593        109 GLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFV  188 (445)
T ss_pred             CCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHH
Confidence            999999999998887766545678888888887654332 111             1123333311100  00 11    


Q ss_pred             ---hhhHHHHHHc---CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435          165 ---FQGLLEDLRA---APSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM  237 (407)
Q Consensus       165 ---~~~l~~~i~~---~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~  237 (407)
                         ++++++.+..   ..+..++++ -......|.+ .+++.+++|.++|++||+++|+||++.+|+..+   ..+....
T Consensus       189 ~~~~~~~~~~~~~~~~~~~iAavI~-EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG---~~~a~~~  264 (445)
T PRK08593        189 EEYLAPLKEMFEKYLPADEVACIVI-ETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTG---KWSSISH  264 (445)
T ss_pred             HHHHHHHHHHHHhhcCCCceEEEEE-ccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---hHHHHHh
Confidence               1344444432   133455555 4456666776 789999999999999999999999999887654   2223322


Q ss_pred             HHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHH
Q 015435          238 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLE  317 (407)
Q Consensus       238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  317 (407)
                      +.- ..+   +.+++|.++ .|+++|++  +++ ++    +.+.+.......+.+.+++++.++.+.++...      + 
T Consensus       265 ~gv-~pD---i~t~gK~l~-~G~p~gav--~~~-~~----i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~------~-  325 (445)
T PRK08593        265 FNI-TPD---LMSFGKSLA-GGMPMSAI--VGR-KE----IMESLEAPAHLFTTGANPVSCAAALATIDMIE------D-  325 (445)
T ss_pred             cCC-CCC---Eeeeccccc-CCcccEEE--EEc-HH----HHhhhccCCCCCCCCCCHHHHHHHHHHHHHHH------h-
Confidence            211 122   336899998 78999998  565 44    44434322223455677888888877775331      1 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC--CCCCcccccCCceeEEe--cC-----C-CH---HHHHHhHhhccEEEcCC-C---
Q 015435          318 LKAMADRIISMRQQLFDALSARG--TPGDWSHIIKQIGMFTF--TG-----L-NS---EQVAFMTKEYHIYMTSD-G---  380 (407)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~--~~-----~-~~---~~~~~~l~~~gi~~~~g-g---  380 (407)
                       +.+.++.+++.+++.+.|+++.  .+ .+..+...|.++.+  ..     . +.   ..+...+.++||.+.+. +   
T Consensus       326 -~~l~~~~~~~g~~l~~~L~~l~~~~~-~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~l  403 (445)
T PRK08593        326 -ESLLQRSAEKGEYARKRFDQWVSKYN-FVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVAGNVL  403 (445)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccCCCEE
Confidence             2345566666677777776541  11 01122223333221  11     0 11   22334455589999764 3   


Q ss_pred             eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |++... ++++|++.+++++.++++++
T Consensus       404 r~~p~l~~t~~~id~~~~~l~~~l~~~  430 (445)
T PRK08593        404 RFQPPLVITYEQLDTALNTIEQAFTAL  430 (445)
T ss_pred             EEECCCccCHHHHHHHHHHHHHHHHHH
Confidence            665543 58899999999999998754

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.85  E-value=3.5e-19  Score=167.99  Aligned_cols=159  Identities=18%  Similarity=0.139  Sum_probs=120.0

Q ss_pred             CceEEeecCCcccHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC
Q 015435           99 NRVTTVQCLSGTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS  177 (407)
Q Consensus        99 ~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~  177 (407)
                      +++++  |+|||+++.+++  ... +.+||+|++++++|..+...+...|++++.++++ ++++.+|+++++++++  ++
T Consensus        47 ~~~v~--~~sgt~aL~~~l--~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d-~~~~~~d~~~le~~i~--~~  119 (376)
T TIGR02379        47 KKALL--TPSCTAALEMAA--LLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR-PDTMNIDETLIESAIT--HR  119 (376)
T ss_pred             CeEEE--eCCHHHHHHHHH--HHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC-CCcCCCCHHHHHHhcC--cC
Confidence            78999  999999999884  333 6799999999999999999999999999999994 5557899999999887  56


Q ss_pred             CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccccc-CCCCCchhHHHHHHHHcCCcEEEEEecCcccc
Q 015435          178 GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFA-SGSLDADAQSVRMFVADGGECLVAQSYAKNMG  256 (407)
Q Consensus       178 ~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~  256 (407)
                      +++++    |+||||...+   +++|.++|++||++||+|++++.+. +.+.     .   ....++-..+.+..+|.++
T Consensus       120 tk~Ii----p~~~~G~~~d---~~~I~~la~~~~i~vIeDaa~~~g~~~~~~-----~---~g~~~~~~~fSf~~~K~l~  184 (376)
T TIGR02379       120 TKAIV----PVHYAGVACD---MDTIMALANKHQLFVIEDAAQGVMSTYKGR-----A---LGSIGHLGTFSFHETKNYT  184 (376)
T ss_pred             ceEEE----EeCCCCCccC---HHHHHHHHHHCCCEEEEECccccCCccCCc-----c---cCCCCCEEEEeCCCCCcCc
Confidence            66654    4678999664   7788888999999999999987654 3321     1   1111122222222347776


Q ss_pred             ccCCCcceeEEeecChhhHHHHHHHH
Q 015435          257 LYGERVGALSIVCKTEDVASRVESQL  282 (407)
Q Consensus       257 ~~G~r~G~~~~v~~~~~~~~~~~~~~  282 (407)
                       +|.+.|++  +++++++.+++....
T Consensus       185 -~g~~gG~v--~~~~~~~~~~~~~~~  207 (376)
T TIGR02379       185 -SGGEGGAL--LINDQAFIERAEIIR  207 (376)
T ss_pred             -ccCCceEE--EECCHHHHHHHHHHH
Confidence             67788998  788888888766543

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PLN02509 cystathionine beta-lyase

Probab=99.85  E-value=8.2e-19  Score=167.94  Aligned_cols=283  Identities=16%  Similarity=0.150  Sum_probs=179.2

Q ss_pred             ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----Hh
Q 015435           69 KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FT  144 (407)
Q Consensus        69 ~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~  144 (407)
                      +.|.+. |.+ .++++.+++....+    .++.++  ++||++++.++   +..+.+||+|++++|.|..+...    +.
T Consensus       125 ~~Y~r~-gnp-t~~aLE~~lA~leg----~e~ai~--~~SG~aAi~~i---l~ll~~GD~VI~~~~~y~~t~~ll~~~l~  193 (464)
T PLN02509        125 YDYTRS-GNP-TRDALESLLAKLDK----ADRAFC--FTSGMAALSAV---THLIKNGEEIVAGDDVYGGSDRLLSQVVP  193 (464)
T ss_pred             CccCCC-CCH-HHHHHHHHHHHHhC----CCEEEE--eCcHHHHHHHH---HHHhCCCCEEEEcCCchhhHHHHHHHHHH
Confidence            457654 543 45555555533222    256777  88888888665   34578999999999999988643    45


Q ss_pred             hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccccc
Q 015435          145 LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFA  224 (407)
Q Consensus       145 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~  224 (407)
                      ..|++++.++.       .|++++++++.  +++++|++ ++|+||||.   ..++++|+++|++||+++|+|++|....
T Consensus       194 ~~G~~v~~vd~-------~d~e~l~~ai~--~~TklV~l-esPsNPtG~---i~Dl~~I~~lAk~~g~~lIVD~A~a~~~  260 (464)
T PLN02509        194 RSGVVVKRVNT-------TNLDEVAAAIG--PQTKLVWL-ESPTNPRQQ---ISDIRKIAEMAHAQGALVLVDNSIMSPV  260 (464)
T ss_pred             HCCeEEEEeCC-------CCHHHHHHhCC--cCCeEEEE-ECCCCCCCC---HHHHHHHHHHHHHcCCEEEEECCccccc
Confidence            77998888754       36889998886  66788777 999999999   5789999999999999999999975443


Q ss_pred             CCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC-cceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHH
Q 015435          225 SGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER-VGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT  303 (407)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r-~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (407)
                      ..    .  +.    . ....++++|++|.++.+|-- .|.+  ++.++.+..++    ...+.......+......+..
T Consensus       261 ~~----~--pl----~-~gaDivv~S~tK~l~G~gdv~gG~v--~~~~~~l~~~~----~~~~~~~g~~l~p~~A~l~lr  323 (464)
T PLN02509        261 LS----R--PL----E-LGADIVMHSATKFIAGHSDVMAGVL--AVKGEKLAKEV----YFLQNSEGSGLAPFDCWLCLR  323 (464)
T ss_pred             cC----C--hh----h-cCCcEEEecCcccccCCCccceeEE--EeccHHHHHHH----HHHHHhcCCCcCHHHHHHHHh
Confidence            22    1  11    1 23468899999998765533 3555  44544433332    222221112233333333332


Q ss_pred             HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---------------ccCCceeEEecCCCHHHHHHh
Q 015435          304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH---------------IIKQIGMFTFTGLNSEQVAFM  368 (407)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~  368 (407)
                      .|          +.+..+.++..++.+.+.+.|++.+.-..+.+               ....||++.|.--+.+.+.++
T Consensus       324 ~L----------~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~~~~~~f  393 (464)
T PLN02509        324 GI----------KTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHL  393 (464)
T ss_pred             hh----------hhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHH
Confidence            22          33556677788888999999987642000000               112467776642244555555


Q ss_pred             HhhccEEE---cCC-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          369 TKEYHIYM---TSD-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       369 l~~~gi~~---~~g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ++...+..   .=|                             |  |+|++-   |+.+.+++-|.++|+.
T Consensus       394 ~~~l~l~~~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGl---E~~~DLi~Dl~~Al~~  461 (464)
T PLN02509        394 VETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI---EDVDDLISDLDIAFRT  461 (464)
T ss_pred             HHcCCcceEcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHcc
Confidence            55544321   111                             1  888873   8899999999998863

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.85  E-value=6e-19  Score=166.43  Aligned_cols=275  Identities=17%  Similarity=0.194  Sum_probs=177.7

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCce
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGLS  149 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~~  149 (407)
                      ......|++.++++. +.       +..++  +++|+.++.++   +..+.+||+|++++|.|.+...    .+...|++
T Consensus        49 ~p~~~~Le~~lA~l~-g~-------~~~~~--~~sG~aai~~~---~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~  115 (377)
T PRK07671         49 NPTRAALEELIAVLE-GG-------HAGFA--FGSGMAAITAV---MMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIE  115 (377)
T ss_pred             ChHHHHHHHHHHHHh-CC-------CceEE--eCCHHHHHHHH---HHHhCCCCEEEECCCccchHHHHHHHHHhcCCeE
Confidence            344778899999987 43       34455  67777787765   3457899999999999985443    33457888


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                      ++.++.       .|++++++++.  ++++++++ ++|+||||.+.   ++++|+++|+++|+++|+|++|.......  
T Consensus       116 v~~v~~-------~d~~~l~~ai~--~~tklV~l-e~P~NPtg~~~---dl~~I~~la~~~g~~lvvD~a~~~~~~~~--  180 (377)
T PRK07671        116 HTFVDT-------SNLEEVEEAIR--PNTKAIYV-ETPTNPLLKIT---DIKKISTIAKEKGLLTIVDNTFMTPYWQS--  180 (377)
T ss_pred             EEEECC-------CCHHHHHHhcC--CCCeEEEE-ECCCCCCCccc---CHHHHHHHHHHcCCEEEEECCCCccccCC--
Confidence            888854       38899999887  66788777 89999999865   68888888999999999999986543321  


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                          ++    . ....++++|+||.++.++- -.|++  +++++++.++    +...+.......+......+...+   
T Consensus       181 ----p~----~-~g~Divv~S~sK~l~G~~~~~~G~~--v~~~~~l~~~----~~~~~~~~g~~~~~~~a~l~~~~l---  242 (377)
T PRK07671        181 ----PI----S-LGADIVLHSATKYLGGHSDVVAGLV--VVNSPELAED----LHFVQNSTGGILGPQDSWLLLRGL---  242 (377)
T ss_pred             ----hh----h-hCCeEEEecCcccccCCccceeEEE--EeCcHHHHHH----HHHHHHhhcCCCCHHHHHHHHcCc---
Confidence                11    1 1235999999999985543 33555  5666554444    333333322233443333333222   


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Cccc----ccCCceeEEecCCCHHHHHHhHhhcc
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSH----IIKQIGMFTFTGLNSEQVAFMTKEYH  373 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~g  373 (407)
                             +.+..+.++..++...+.+.|++.+.      |.     ....    ....||++.+.--+.+.+.+++++..
T Consensus       243 -------~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~  315 (377)
T PRK07671        243 -------KTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETANKVLERLQ  315 (377)
T ss_pred             -------ChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCCHHHHHHHHHhCC
Confidence                   23455667777888999999987642      10     0000    01235666653224455556665544


Q ss_pred             EEE-cC--C-----------------------------C--eEEecCCCCCChhHHHHHHHHHHH
Q 015435          374 IYM-TS--D-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       374 i~~-~~--g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      +.. .+  |                             +  |||++-   |+.+.+++-|+++|+
T Consensus       316 l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~  377 (377)
T PRK07671        316 YFTLAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVGI---EDGEDLIEDLAQALA  377 (377)
T ss_pred             cceEccCCCCCCeEeECCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHhC
Confidence            422 00  1                             1  888873   788999999888763

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.85  E-value=4.7e-19  Score=169.63  Aligned_cols=160  Identities=16%  Similarity=0.145  Sum_probs=125.4

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH----HHHhhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP----KVFTLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~----~~~~~~G~  148 (407)
                      +.....+|++++++++ +.       +..++  ++||++++..++  ...+.+||+|+++.+.|.+..    ..+...|+
T Consensus        55 ~~p~~~~le~~lA~l~-g~-------~~~v~--~~sG~~Ai~~al--~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~  122 (418)
T TIGR01326        55 MNPTTDVLEQRIAALE-GG-------VAALA--VASGQAAITYAI--LNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGI  122 (418)
T ss_pred             CChhHHHHHHHHHHHh-CC-------CeEEE--EccHHHHHHHHH--HHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCc
Confidence            3445788999999988 43       56788  999999999884  455789999999999986543    34567899


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++.       .|++++++.+.  ++++++++ .+|+||||.+.+   +++|+++|+++|+++|+|++|......  
T Consensus       123 ~v~~v~~-------~d~~~l~~~l~--~~t~~V~l-e~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~~--  187 (418)
T TIGR01326       123 EVRFVDP-------DDPEEFEKAID--ENTKAVFA-ETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYLC--  187 (418)
T ss_pred             EEEEECC-------CCHHHHHHhcC--cCCeEEEE-ECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhcC--
Confidence            9988864       27899999887  56777777 899999999774   788888899999999999998633211  


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK  270 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~  270 (407)
                        .  +   + . ....+++.|+||.++.+|+|+||+  +++
T Consensus       188 --~--~---l-~-~g~Divv~S~sK~l~g~G~~lGg~--v~~  218 (418)
T TIGR01326       188 --R--P---I-D-HGADIVVHSATKYIGGHGTAIGGV--IVD  218 (418)
T ss_pred             --C--c---h-h-cCCeEEEECccccccCCccceEEE--EEe
Confidence              0  1   1 1 245799999999999999999998  454

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.85  E-value=9e-20  Score=171.91  Aligned_cols=262  Identities=19%  Similarity=0.158  Sum_probs=170.9

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh--cCC-CeEEecCCCCCChHHH---HhhcCcee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH--YHQ-LTIYIPQPTWGNHPKV---FTLAGLSV  150 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~--~~g-d~Vi~~~p~y~~~~~~---~~~~G~~~  150 (407)
                      ++++|+.+++++ +.     ++++|++  |+|+|+++.+++..+...  .+| +.|++....|+.+...   ++..|+++
T Consensus        44 ~~~~r~~la~~~-g~-----~~~~v~~--~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v  115 (353)
T TIGR03235        44 VERARKQVAEAL-GA-----DTEEVIF--TSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTV  115 (353)
T ss_pred             HHHHHHHHHHHh-CC-----CCCeEEE--eCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEE
Confidence            567888999887 42     2478999  999999999885333221  256 6788888777766544   34579999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++.  +.++.+|++++++.+.  ++++++++ ++++||||.+.+   +++|+++|+++|+++++|+++...... .  
T Consensus       116 ~~v~~--~~~~~~d~~~l~~~l~--~~~~lv~~-~~~~n~tG~~~~---~~~I~~l~~~~~~~~ivD~a~~~g~~~-~--  184 (353)
T TIGR03235       116 TYLPV--DESGRIDVDELADAIR--PDTLLVSI-MHVNNETGSIQP---IREIAEVLEAHEAFFHVDAAQVVGKIT-V--  184 (353)
T ss_pred             EEEcc--CCCCcCCHHHHHHhCC--CCCEEEEE-EcccCCceeccC---HHHHHHHHHHcCCEEEEEchhhcCCcc-c--
Confidence            99988  3456799999999886  55667666 899999999876   788888899999999999996533221 1  


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH-HHHHHHHh--h-hhhcccCCCChhHHHHHHHHhc
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA-SRVESQLK--L-VIRPMYSSPPIHGASIVATILK  306 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~-~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~l~  306 (407)
                      +   +    ......+++.|.+|.++.+|  +|++  +++++... ..+.....  . ..+....+++.....++..+++
T Consensus       185 ~---~----~~~~~D~~~~s~~K~~gp~g--~g~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~  253 (353)
T TIGR03235       185 D---L----SADRIDLISCSGHKIYGPKG--IGAL--VIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAE  253 (353)
T ss_pred             c---c----cccCCCEEEeehhhcCCCCc--eEEE--EEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHH
Confidence            1   1    11234577778899877555  6887  45532110 00000000  0 0011122444445555555554


Q ss_pred             ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC----CceeEEe--cCCCHHHHHHhHhhccEEEcCC
Q 015435          307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK----QIGMFTF--TGLNSEQVAFMTKEYHIYMTSD  379 (407)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~l~~~gi~~~~g  379 (407)
                      ..      ....++.+++++++++++.+.|++.|    +++..+    ..++..+  .+.+.+.+...|++ +|.+.+|
T Consensus       254 ~~------~~~~~~~~~~~~~l~~~l~~~l~~~g----~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~-~i~v~~g  321 (353)
T TIGR03235       254 IA------RRNAQAWEVKLRAMRNQLRDALQTLG----VKLNGDPAETIPHILNFSIDGVNSEALIVNLRA-DAAVSTG  321 (353)
T ss_pred             HH------HhhHHHHHHHHHHHHHHHHHHhccCC----eEEeCCcccccCCEEEEEeCCcCHHHHHHHHhC-CeEEEch
Confidence            21      23467788999999999999998866    444321    1222322  35677777777775 8999876

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.85  E-value=1.2e-18  Score=165.18  Aligned_cols=274  Identities=16%  Similarity=0.204  Sum_probs=177.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH----HHHhhcCceee
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP----KVFTLAGLSVK  151 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~----~~~~~~G~~~~  151 (407)
                      ...++++.++++. +.       ++.++  +++|+.++.+++   ..+.+||+|++++|.|.+..    ..++..|++++
T Consensus        55 ~~~~le~~lA~l~-g~-------~~~v~--~~sG~~ai~~~l---~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~  121 (390)
T PRK08064         55 TREALEDIIAELE-GG-------TKGFA--FASGMAAISTAF---LLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHT  121 (390)
T ss_pred             hHHHHHHHHHHHh-CC-------CCeEE--ECCHHHHHHHHH---HHhCCCCEEEEccCccchHHHHHHHHHHHcCCEEE
Confidence            3778899999987 43       33455  677788887773   35789999999999998544    34456899999


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      .++.       .|++++++.+.  ++++++++ ++|+||||.+.   ++++|+++|+++|+++|+|++|..+....    
T Consensus       122 ~v~~-------~d~~~l~~~l~--~~tklV~l-~~p~NptG~~~---dl~~I~~la~~~g~~vvvD~a~~~~~~~~----  184 (390)
T PRK08064        122 FVDM-------TNLEEVAQNIK--PNTKLFYV-ETPSNPLLKVT---DIRGVVKLAKAIGCLTFVDNTFLTPLLQK----  184 (390)
T ss_pred             EECC-------CCHHHHHHhcC--CCceEEEE-ECCCCCCcEec---cHHHHHHHHHHcCCEEEEECCCCcccccC----
Confidence            8865       26888998887  56777777 89999999976   57788888999999999999987554321    


Q ss_pred             hHHHHHHHHcCCcEEEEEecCcccccc-CCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhh
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLY-GERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTM  310 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (407)
                        ++    . ....+++.|++|.++.+ |...|++  ++.++++.++    +......+....+......+   +...  
T Consensus       185 --~~----~-~g~Divv~S~tK~~~G~~~~laG~~--v~~~~~~~~~----l~~~~~~~g~~~~~~~a~l~---~~gl--  246 (390)
T PRK08064        185 --PL----D-LGADVVLHSATKFLAGHSDVLAGLA--VVKDEELAQK----LYFLQNSFGAVLGVQDCWLV---LRGL--  246 (390)
T ss_pred             --ch----h-hCCcEEEeecceeccCCccceeEEE--EeCCHHHHHH----HHHHHHhcCCCCCHHHHHHH---Hccc--
Confidence              11    1 12458899999998633 3455777  4665554444    43343333223333333332   2222  


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Ccccc----cCCceeEEecCCCHHHHHHhHhhccE-
Q 015435          311 YKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSHI----IKQIGMFTFTGLNSEQVAFMTKEYHI-  374 (407)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~gi-  374 (407)
                           +.+..+.++..++...+.+.|++.+.      |.     .+...    ...||++.+.--+.+.+..++++.++ 
T Consensus       247 -----~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~  321 (390)
T PRK08064        247 -----KTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLP  321 (390)
T ss_pred             -----CcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcc
Confidence                 23455556667788888888887642      10     01111    12455655431144556677777666 


Q ss_pred             --EEcCC-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          375 --YMTSD-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       375 --~~~~g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                        .++-|                             |  |+|++-   |+.+.+++.|.+++++
T Consensus       322 ~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGl---e~~~dli~dl~~Al~~  382 (390)
T PRK08064        322 VFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGL---ENVDDLIADFEQALSY  382 (390)
T ss_pred             eEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHh
Confidence              22212                             1  888884   7788888888888764

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.85  E-value=1.7e-18  Score=165.47  Aligned_cols=156  Identities=15%  Similarity=0.124  Sum_probs=120.4

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCce
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGLS  149 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~~  149 (407)
                      ......|+++++++. +.       +..++  +++|++|+.+++  ...+.+||+|+++.+.|.+....+.    ..|++
T Consensus        57 ~pt~~~Le~~lA~l~-g~-------~~~l~--~ssG~~Ai~~al--~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~  124 (425)
T PRK06084         57 NPTNDVLEQRVAALE-GG-------VGALA--VASGMAAITYAI--QTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIE  124 (425)
T ss_pred             CchHHHHHHHHHHHh-CC-------CceeE--ehhHHHHHHHHH--HHHhCCCCEEEEeCCCcchHHHHHHHhcccceeE
Confidence            344678899999987 42       45677  899999999984  4457899999999999986655544    24666


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                      +..++.       .|++++++.+.  ++++++++ ++|+||||.+++   +++|+++|+++|+++|+|++|+.....   
T Consensus       125 v~~~d~-------~d~e~le~ai~--~~tklV~l-esp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~---  188 (425)
T PRK06084        125 TRFAAH-------DDIAALEALID--ERTKAVFC-ESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLC---  188 (425)
T ss_pred             EEEECC-------CCHHHHHHHhc--cCCcEEEE-eCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC---
Confidence            655532       48899999987  56788777 899999999886   788888899999999999998643321   


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccCCCccee
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGAL  265 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  265 (407)
                       .  +   + . ....+++.|++|.++.+|.++|.+
T Consensus       189 -~--p---~-~-~gaDivv~S~tK~l~G~g~~~gG~  216 (425)
T PRK06084        189 -R--P---F-E-HGADIVVHSLTKYIGGHGTSIGGI  216 (425)
T ss_pred             -C--h---h-h-cCCCEEEECchhcccccccceeEE
Confidence             1  1   1 1 234599999999999999999987

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.84  E-value=1.2e-18  Score=165.38  Aligned_cols=280  Identities=14%  Similarity=0.109  Sum_probs=183.5

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCcee
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGLSV  150 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~~~  150 (407)
                      +....|.+.++++. +.       +..+.  ++||+.|+.+++  ...+.+||+|+++.++|.+....    +...|+++
T Consensus        61 Ptv~~lE~~la~le-g~-------~~av~--~~SG~aAi~~al--~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v  128 (432)
T PRK06702         61 PTLAAFEQKLAELE-GG-------VGAVA--TASGQAAIMLAV--LNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDV  128 (432)
T ss_pred             cHHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH--HHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEE
Confidence            34778889999987 43       46777  999999999984  55588999999999999877665    67889999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++.      .+|+++++++++  +++++|++ .+|+|||+.+.+   +++|+++|+++|+++|+|++|..-..     
T Consensus       129 ~~vd~------~~d~~~l~~~I~--~~Tk~I~~-e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~-----  191 (432)
T PRK06702        129 TFFNP------NLTADEIVALAN--DKTKLVYA-ESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYL-----  191 (432)
T ss_pred             EEECC------CCCHHHHHHhCC--cCCeEEEE-EcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhh-----
Confidence            88843      268899999998  67888887 789999999775   88888899999999999999741111     


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccc-----cccCCCc-----ceeEEeecChhhHH-----------------H-HHHHH
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNM-----GLYGERV-----GALSIVCKTEDVAS-----------------R-VESQL  282 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~-----~~~G~r~-----G~~~~v~~~~~~~~-----------------~-~~~~~  282 (407)
                          ...+  .....|++.|+||.+     +++|.++     +|.  ..+++++.+                 . +....
T Consensus       192 ----~~pl--~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (432)
T PRK06702        192 ----CQAF--EHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWT--NGKYPELVEPDPSYHGVSYVQNFGAAAYIVKAR  263 (432)
T ss_pred             ----CChh--hcCCCEEEEccccccCCCcceeceEEEeCCCcccc--cccccccccccccccccchhhccchhhHHHHHH
Confidence                0001  123459999999955     4444444     343  122222111                 0 11111


Q ss_pred             hhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---------------
Q 015435          283 KLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH---------------  347 (407)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------  347 (407)
                      ....+....+.++.....+...|+..          +.+.++..++...+.+.|++.+.-..+.+               
T Consensus       264 ~~~~~~~g~~~sp~~a~l~~rgL~Tl----------~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~  333 (432)
T PRK06702        264 VQLLRDYGNCMSPFNAYISNIGLETL----------HLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKY  333 (432)
T ss_pred             HHHHHHccCCCCHHHHHHHHhccCcH----------HHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHh
Confidence            11222333466777777777666643          34445556888888888887652000000               


Q ss_pred             c-cCCceeEEec-CCCHHHHHHhHhhccEEEc---CC-----------------------------C--eEEecCCCCCC
Q 015435          348 I-IKQIGMFTFT-GLNSEQVAFMTKEYHIYMT---SD-----------------------------G--RISMAGLSSKT  391 (407)
Q Consensus       348 ~-~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~---~g-----------------------------g--Ris~~~~~~e~  391 (407)
                      . ..-||++.+. .-+.+.+.++++.-.++..   =|                             |  |+|++-   |+
T Consensus       334 ~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl---Ed  410 (432)
T PRK06702        334 LKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGI---ED  410 (432)
T ss_pred             CcCCCceEEEEEecCCHHHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEecc---CC
Confidence            0 1135666654 2244555555554333221   01                             1  888873   88


Q ss_pred             hhHHHHHHHHHHH
Q 015435          392 VPHLTDAIHAAVT  404 (407)
Q Consensus       392 i~~~~~~l~~~l~  404 (407)
                      .+.+++-|.++|+
T Consensus       411 ~eDLi~Dl~~Al~  423 (432)
T PRK06702        411 VSDIIADLEAALV  423 (432)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999885

>PRK05968 hypothetical protein; Provisional

Probab=99.84  E-value=2e-18  Score=163.71  Aligned_cols=213  Identities=15%  Similarity=0.155  Sum_probs=144.4

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH----HHHhhcCcee
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP----KVFTLAGLSV  150 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~----~~~~~~G~~~  150 (407)
                      ....++++++++++ +.       +..++  +++|+.|+.+++  ...+.+||+|+++.+.|....    ..+...|+++
T Consensus        63 p~~~~le~~lA~l~-g~-------~~av~--~~sG~~Ai~~al--~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v  130 (389)
T PRK05968         63 PTVRAFEEMLAKLE-GA-------EDARG--FASGMAAISSTV--LSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEV  130 (389)
T ss_pred             hhHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceE
Confidence            34678999999987 53       34566  777788998874  445789999999999998644    4556789999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++.       .|++++++.+.   +++++++ .   ||||.+++..++++|+++|++||+++|+|++|.......   
T Consensus       131 ~~vd~-------~d~~~l~~~i~---~tklV~i-e---~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~---  193 (389)
T PRK05968        131 DYVDG-------RDEEAVAKALP---GAKLLYL-E---SPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQR---  193 (389)
T ss_pred             EEeCC-------CCHHHHHHhcc---cCCEEEE-E---CCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC---
Confidence            88854       27888888763   5677777 4   455555668999999999999999999999987654321   


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                         ++    . ....+++.|+||.++.+| .+.|++   +.++++.+++......   ......+...+..+...|+.  
T Consensus       194 ---p~----~-~g~Divv~S~tK~l~g~~~~~gG~i---~~~~~~~~~l~~~~~~---~~g~~~~~~~A~~~l~~L~t--  257 (389)
T PRK05968        194 ---PI----T-LGVDLVIHSASKYLGGHSDTVAGVV---AGSKEHIARINAEAYP---YLGAKLSPFEAWLLLRGLRT--  257 (389)
T ss_pred             ---ch----h-cCCcEEEeeccccccCCCCeEEEEE---EECHHHHHHHHHHHHH---hCCCCCChHHHHHHHcccCc--
Confidence               11    1 123578889999998765 466766   4555544444332111   11223444444444444442  


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          310 MYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                              +....++..++.+.+.+.|++.+
T Consensus       258 --------l~~r~~~~~~~a~~la~~L~~~p  280 (389)
T PRK05968        258 --------LPLRMKAHEASALEIARRLKAHP  280 (389)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHhCC
Confidence                    34455556667788888888765

>PRK06541 hypothetical protein; Provisional

Probab=99.84  E-value=1.7e-18  Score=167.10  Aligned_cols=346  Identities=12%  Similarity=0.084  Sum_probs=210.6

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc--cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK--EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++++||+..|....+.| ..++.+++++.+++. ......  .| ......++.+.+++.. ..     ..+.+++ 
T Consensus        48 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Av~~q~~-~~~~~~~~~~-~~~~~~~la~~l~~~~-p~-----~~~~v~f-  117 (460)
T PRK06541         48 DDRGKRYLDGLAGLFVVQVG-HGRAELAEAAAKQAG-TLAFFPLWSY-AHPPAIELAERLAALA-PG-----DLNRVFF-  117 (460)
T ss_pred             eCCCCEEEECCccHHhccCC-CCCHHHHHHHHHHHh-hCcCcccccc-CCHHHHHHHHHHHHhC-CC-----CcCEEEE-
Confidence            45679999999997656677 667888888888886 111111  12 1222344555555543 11     1268999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc------CCCeEEecCCCCCChHHHHhhc-Cc------------eeeEEEeecCCC---CC
Q 015435          105 QCLSGTGSLRVGAEFLARHY------HQLTIYIPQPTWGNHPKVFTLA-GL------------SVKTYRYYDPAT---RG  162 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~------~gd~Vi~~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~~---~~  162 (407)
                       +++|++|++.++++.+...      ...+|+...-+|++........ |.            .+..+|..+...   ++
T Consensus       118 -~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  196 (460)
T PRK06541        118 -TTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELG  196 (460)
T ss_pred             -cCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccC
Confidence             9999999999998877652      1357888888887765433321 11            122233211000   11


Q ss_pred             cC--------hhhHHHHHHcC-CCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          163 LN--------FQGLLEDLRAA-PSGAIVLLHACAHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       163 ~d--------~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      -+        ++.+++.+... ++..+.+++...++++|.+. +.+.+++|.++|++||+++|+||++.+|+..+   ..
T Consensus       197 ~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G---~~  273 (460)
T PRK06541        197 DDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLG---EM  273 (460)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---hh
Confidence            12        25677777532 33444445344488889875 58999999999999999999999998886543   22


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhh----hhcccCCCChhHHHHHHHHhcC
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLV----IRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                      +....+.- ..+++   +++|.++ .|+ ++|++  +++     +++.+.+...    ....+.+.+++++.++.+.++.
T Consensus       274 ~a~~~~gv-~PDiv---t~gK~l~-~G~~pigav--~~~-----~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~  341 (460)
T PRK06541        274 FGCERFGY-VPDII---TCAKGIT-SGYSPLGAM--IAS-----DRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDI  341 (460)
T ss_pred             hhhhhcCC-CCCEE---Eeccccc-CCccceeEE--EEc-----HHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHH
Confidence            23222211 12333   4899999 787 99999  565     3343333211    1123446677777777776653


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec---C------CCH--------HHHHHhHh
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT---G------LNS--------EQVAFMTK  370 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~------~~~--------~~~~~~l~  370 (407)
                      ..        -+...++++++.++|.+.|+++.....+..+...|.++.+-   +      ++.        ..+...+.
T Consensus       342 l~--------~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  413 (460)
T PRK06541        342 FE--------REGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALF  413 (460)
T ss_pred             HH--------hccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHH
Confidence            21        12455778888888888888763110122234455555432   1      100        12334455


Q ss_pred             hccEEEcCC--C----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          371 EYHIYMTSD--G----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       371 ~~gi~~~~g--g----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++||.+.+.  |    ||+..- ++++++++++++|.++++++
T Consensus       414 ~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~  456 (460)
T PRK06541        414 EAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEA  456 (460)
T ss_pred             hCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            689999763  3    676552 48899999999999998753

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.84  E-value=1.6e-18  Score=166.87  Aligned_cols=346  Identities=16%  Similarity=0.080  Sum_probs=208.4

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...+++++|+..|....+.| ..++++++++.+++. .......|.+.....++.+++++...+      ..+.+++  +
T Consensus        78 D~dG~~ylD~~~g~~~~~lG-H~~p~v~~Ai~~ql~-~l~~~~~~~~~~~~~~lae~L~~~~p~------~~~~v~f--~  147 (459)
T PRK11522         78 DTQGQEFIDCLGGFGIFNVG-HRNPVVVSAVQNQLA-KQPLHSQELLDPLRAMLAKTLAALTPG------KLKYSFF--C  147 (459)
T ss_pred             ECCCCEEEECCcCHHhhhcC-CCCHHHHHHHHHHHh-hCcccccccCCHHHHHHHHHHHHhCCC------CCCEEEE--e
Confidence            34578999999886555677 667788888888886 222222233333344555555554411      1267999  9


Q ss_pred             CCcccHHHHHHHHHHhhcC--C-CeEEecCCCCCChHHHHhhc-CceeeE---EEeecCCC---CCcChhhHHHHHHc--
Q 015435          107 LSGTGSLRVGAEFLARHYH--Q-LTIYIPQPTWGNHPKVFTLA-GLSVKT---YRYYDPAT---RGLNFQGLLEDLRA--  174 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~--g-d~Vi~~~p~y~~~~~~~~~~-G~~~~~---v~~~~~~~---~~~d~~~l~~~i~~--  174 (407)
                      +||++|++.++++.+....  | ..|+...-+|++........ |.....   .|.. +.-   ...|.+++++.+..  
T Consensus       148 ~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~l~~~~  226 (459)
T PRK11522        148 NSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLL-PGFRHVPFGNIEAMRTALSECK  226 (459)
T ss_pred             CCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCC-CCCcccCCCCHHHHHHHHHHhh
Confidence            9999999999988877653  3 36888888888776544322 211100   1110 000   01266777777752  


Q ss_pred             -C-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          175 -A-PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       175 -~-~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                       . .+..++++ -....-.|.+ .+.+.++++.++|++||+++|+||++.+|+..+   ..+....+.- ..+++   ++
T Consensus       227 ~~~~~iAavIv-Epv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG---~~~a~e~~gv-~PDiv---t~  298 (459)
T PRK11522        227 KTGDDVAAVIL-EPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTG---KMFACEHENV-QPDIL---CL  298 (459)
T ss_pred             ccCCcEEEEEE-ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccc---hhhhhhccCC-CCCEE---Ee
Confidence             1 22344555 3333344664 678899999999999999999999998887654   2333332221 12222   68


Q ss_pred             CccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 015435          252 AKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQ  330 (407)
Q Consensus       252 sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  330 (407)
                      +|.+| .| +++|.+  ++. +++.+.+..  ..+....+++.+++++.++.+.|+...      +  +.+.++++++.+
T Consensus       299 gK~lg-gG~~Pigav--~~~-~~i~~~~~~--~~~~~~~T~~gnp~~~Aaala~L~~i~------~--~~l~~~~~~~g~  364 (459)
T PRK11522        299 AKALG-GGVMPIGAT--IAT-EEVFSVLFD--NPFLHTTTFGGNPLACAAALATINVLL------E--QNLPAQAEQKGD  364 (459)
T ss_pred             chhhh-CCCccceeE--EEc-HHHHHHhcc--CCcccCCCCCCCHHHHHHHHHHHHHHh------c--chHHHHHHHHHH
Confidence            99998 67 689998  565 333332211  111223344668888888877776331      1  245577778888


Q ss_pred             HHHHHHHhcC--CCCCcccccCCceeEEecCC-C---HHHHHHhHhhccEEEcCC---C---eEEecC-CCCCChhHHHH
Q 015435          331 QLFDALSARG--TPGDWSHIIKQIGMFTFTGL-N---SEQVAFMTKEYHIYMTSD---G---RISMAG-LSSKTVPHLTD  397 (407)
Q Consensus       331 ~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~l~~~gi~~~~g---g---Ris~~~-~~~e~i~~~~~  397 (407)
                      +|.+.|+++.  .+..+.-+...|.++ -+.+ +   ...+...+.++||.+.+.   +   |+...- +++++++++++
T Consensus       365 ~l~~~L~~l~~~~~~~i~~VrG~Gl~~-giel~~~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~  443 (459)
T PRK11522        365 YLLDGFRQLAREYPDLVQEARGKGMLM-AIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLK  443 (459)
T ss_pred             HHHHHHHHHHHhCCCceeeEEeceeEE-EEEecCchHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHH
Confidence            8888887763  111111122333333 2322 1   223444455589999764   2   665543 58899999999


Q ss_pred             HHHHHHHhh
Q 015435          398 AIHAAVTRM  406 (407)
Q Consensus       398 ~l~~~l~~~  406 (407)
                      ++.++++++
T Consensus       444 ~l~~~l~~~  452 (459)
T PRK11522        444 AARKALAAM  452 (459)
T ss_pred             HHHHHHHHH
Confidence            999998754

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.84  E-value=1.1e-18  Score=169.85  Aligned_cols=324  Identities=13%  Similarity=0.091  Sum_probs=195.1

Q ss_pred             cccchhHHHHHHHHhccccccccC---CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHH-Hhh
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEY---LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFL-ARH  123 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y---~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~-~~~  123 (407)
                      ..|+.+++.+.+...  -...+.|   ....|..+++.++.+++....+.    +++.+..++|+++.+..+..+. ...
T Consensus        81 ~~~p~i~~~~~~~~~--~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~----~~~~l~~~~GA~a~~~~l~~~r~~~~  154 (481)
T PRK04366         81 KYNPKINEKVARLPG--FAELHPLQPEETVQGALELMYELQEWLKEITGM----DAVTLQPAAGAHGELTGLLMIRAYHE  154 (481)
T ss_pred             CCCHHHHHHHHhCcc--hhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCC----CceEEEeCcHHHHHHHHHHHHHHHhh
Confidence            456566666655422  1245667   34668788888877777444332    2444422444444444332111 224


Q ss_pred             cCCC----eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHH
Q 015435          124 YHQL----TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQ  199 (407)
Q Consensus       124 ~~gd----~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~  199 (407)
                      .+||    +|++++|.|+.+...++..|++++.+++  +.++.+|++++++.+.  ++++++++ ++|+ |||.+  ..+
T Consensus       155 ~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~--~~~~~~D~e~L~~~i~--~~t~~V~v-~~Pn-~tG~~--~~d  226 (481)
T PRK04366        155 ARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPS--NEDGLVDLEALKAAVG--EDTAALML-TNPN-TLGLF--ERN  226 (481)
T ss_pred             ccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeec--CCCCCcCHHHHHhhcc--cCCeEEEE-eCCC-Ccccc--chH
Confidence            5666    9999999999999999999999999998  3457899999999987  56777777 7777 99964  458


Q ss_pred             HHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc----CCCcceeEEeecChhhH
Q 015435          200 WEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY----GERVGALSIVCKTEDVA  275 (407)
Q Consensus       200 l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~v~~~~~~~  275 (407)
                      +++|+++|+++|+++++|+++.....+-.     ..    ......++++|.+|.++.|    |..+|++  .+. +++.
T Consensus       227 l~eI~~~a~~~gal~iVD~a~~~~~~g~~-----~~----~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l--~~~-~~~~  294 (481)
T PRK04366        227 ILEIAEIVHEAGGLLYYDGANLNAILGKA-----RP----GDMGFDVVHLNLHKTFSTPHGGGGPGSGPV--GVK-EELA  294 (481)
T ss_pred             HHHHHHHHHHcCCEEEEEecChhhhcccC-----Cc----cccCCCEEEEechhhcCCCCCCCCCCeeee--eeh-hhhH
Confidence            99999999999999999999742211100     01    1123568888999988644    3456777  344 2222


Q ss_pred             HHHHHHH---h------------hhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          276 SRVESQL---K------------LVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       276 ~~~~~~~---~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      +.+...+   .            .+.+....+.+.+...++..++....     .+.+++..++..++.+++.+.|.++ 
T Consensus       295 ~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G-----~~Gl~~~a~~~~~~a~~l~~~L~~~-  368 (481)
T PRK04366        295 PFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLG-----AEGLREVSEDAVLNANYLKARLKDI-  368 (481)
T ss_pred             hhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHhh-
Confidence            2221000   0            00011111112222333333332211     1345566677788899999999875 


Q ss_pred             CCCCcccccCC--ceeEEec-----CCCHHHHHHhHhhccEEEcC-------CC--eEEecC-CCCCChhHHHHHHHHHH
Q 015435          341 TPGDWSHIIKQ--IGMFTFT-----GLNSEQVAFMTKEYHIYMTS-------DG--RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       341 ~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~l~~~gi~~~~-------gg--Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      ..  +.+..+.  ...|.+.     +.+...+.+.|.++||.+..       .+  |+++.. .+++|++++++.|+++.
T Consensus       369 ~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~  446 (481)
T PRK04366        369 YD--LPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIA  446 (481)
T ss_pred             Cc--ccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHH
Confidence            21  2211111  1222221     23556666666778987651       22  777754 36799999999999987


Q ss_pred             Hh
Q 015435          404 TR  405 (407)
Q Consensus       404 ~~  405 (407)
                      ++
T Consensus       447 ~~  448 (481)
T PRK04366        447 EE  448 (481)
T ss_pred             HH
Confidence            65

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.84  E-value=1.6e-18  Score=165.65  Aligned_cols=337  Identities=16%  Similarity=0.092  Sum_probs=205.4

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...+++++|+..|....+.| ..++.+++++.+++. .......|.......++.+++++...+.      .+.+++  +
T Consensus        71 D~dG~~ylD~~~g~~~~~lG-h~hp~v~~Av~~ql~-~l~~~~~~~~~~~~~~lAe~L~~~~p~~------~~~v~f--~  140 (442)
T TIGR03372        71 DTQGNEFIDCLGGFGIFNVG-HRNPNVIAAVENQLA-KQPLHSQELLDPLRALLAKTLAALTPGK------LKYSFF--C  140 (442)
T ss_pred             ECCCCEEEECCccHHhhhcC-CCCHHHHHHHHHHHH-hCCCcccccCCHHHHHHHHHHHHhCCCC------cCEEEE--e
Confidence            35678999999885545667 667788888888886 2222223333334455666666554211      157889  9


Q ss_pred             CCcccHHHHHHHHHHhhc--CC-CeEEecCCCCCChHHHHhhcCce-------------eeEEEeecCCCCCcChhhHHH
Q 015435          107 LSGTGSLRVGAEFLARHY--HQ-LTIYIPQPTWGNHPKVFTLAGLS-------------VKTYRYYDPATRGLNFQGLLE  170 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~--~g-d~Vi~~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~d~~~l~~  170 (407)
                      +||++|++.++++.+...  .| .+|+...-+|++..........+             +..+|.       .|.+.+++
T Consensus       141 ~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-------~d~~~~~~  213 (442)
T TIGR03372       141 NSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-------GDIEAMLK  213 (442)
T ss_pred             CCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-------CCHHHHHH
Confidence            999999999998887764  23 57888888888776544332111             112221       25677777


Q ss_pred             HHHc---CCC-CcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          171 DLRA---APS-GAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       171 ~i~~---~~~-~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      .+..   .+. ..++++ .......|.. .+++.++++.++|++||+++|+||++.+|+..+   ..+....+.- ..++
T Consensus       214 ~l~~~~~~~~~vAavIv-Epv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~a~e~~gv-~PDi  288 (442)
T TIGR03372       214 ALNECKKTGDDVAAIIL-EPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTG---KMFACEHEGV-QPDI  288 (442)
T ss_pred             HHHHHhcCCCcEEEEEE-eCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccc---cchhhhhcCC-CCCe
Confidence            6642   222 344444 3333344654 578899999999999999999999998887654   3334333321 1223


Q ss_pred             EEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       246 i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +   +++|.+| .| +++|.+  ++. +++.+.+..  .......+++.+++++.++.+.|+-..      +  +.+.++
T Consensus       289 v---t~gK~lg-~G~~Pigav--v~~-~~i~~~~~~--~~~~~~~T~~gnp~~~Aaa~a~L~~i~------~--~~l~~~  351 (442)
T TIGR03372       289 L---CLAKALG-GGVMPIGAT--IAT-EAVFSVLFD--NPFLHTTTFGGNPLACAAALATINELL------E--KNLPAQ  351 (442)
T ss_pred             e---eehhhhc-CCcccceEE--Eec-HHHHHhhhc--cCccccCCCCCCHHHHHHHHHHHHHHH------h--ccHHHH
Confidence            3   3899998 67 689998  555 443333311  111222344667888888887776321      1  234456


Q ss_pred             HHHHHHHHHHHHHhcCC--CCCcccccCCceeEEecCC--C--HHHHHHhHhhccEEEcCC---C---eEEecC-CCCCC
Q 015435          325 IISMRQQLFDALSARGT--PGDWSHIIKQIGMFTFTGL--N--SEQVAFMTKEYHIYMTSD---G---RISMAG-LSSKT  391 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~--~--~~~~~~~l~~~gi~~~~g---g---Ris~~~-~~~e~  391 (407)
                      .+++.+++.+.|+++..  +..+.-....|.++ -+.+  +  ...+...+.++||.+.+.   +   ||...- +++++
T Consensus       352 ~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~-giel~~~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~  430 (442)
T TIGR03372       352 AAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLM-AIEFRDNEIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQ  430 (442)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEEecceEEE-EEEeCChHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHH
Confidence            66777777777776531  11111123334333 3333  1  223444455589998753   2   665543 58899


Q ss_pred             hhHHHHHHHHHH
Q 015435          392 VPHLTDAIHAAV  403 (407)
Q Consensus       392 i~~~~~~l~~~l  403 (407)
                      ++++++++.+++
T Consensus       431 id~~~~~l~~~~  442 (442)
T TIGR03372       431 CALVIKAAKDAL  442 (442)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998764

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.84  E-value=5.8e-18  Score=159.34  Aligned_cols=281  Identities=13%  Similarity=0.106  Sum_probs=180.4

Q ss_pred             ccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----
Q 015435           69 KEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----  142 (407)
Q Consensus        69 ~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----  142 (407)
                      ..|+.  .+....|+++++++. +.       +++++  ++||++|+..++  ...+.+||+|++++|.|.+....    
T Consensus        42 ~~Y~r~gnPt~~~lE~~lA~l~-g~-------~~~~~--~~sG~~Ai~~al--~all~~GD~Vl~~~~~y~~t~~~~~~~  109 (377)
T TIGR01324        42 LTYGRRGTLTHFALQDAMCELE-GG-------AGCYL--YPSGLAAVTNSI--LAFVKAGDHVLMVDSAYEPTRYFCDIV  109 (377)
T ss_pred             CcccCCCCccHHHHHHHHHHHh-CC-------CcEEE--ECcHHHHHHHHH--HHhcCCCCEEEEcCCCcHHHHHHHHHH
Confidence            44654  123468999999987 53       68888  999999999984  55588999999999999877653    


Q ss_pred             HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccc
Q 015435          143 FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG  222 (407)
Q Consensus       143 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~  222 (407)
                      ....|+++..++.   .    +.+.+++.+.  ++++++++ .+|+||||.   ..++++|+++|+++|+++|+|++|+.
T Consensus       110 ~~~~gi~v~~~d~---~----~~e~l~~~i~--~~tklV~l-esp~Np~g~---~~dl~~I~~la~~~g~~livD~t~a~  176 (377)
T TIGR01324       110 LKRMGVDITYYDP---L----IGEDIATLIQ--PNTKVLFL-EAPSSITFE---IQDIPAIAKAARNPGIVIMIDNTWAA  176 (377)
T ss_pred             HHhcCcEEEEECC---C----CHHHHHHhcC--CCceEEEE-ECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCcc
Confidence            3467888776643   1    2277888776  66787777 899999988   67899999999999999999999864


Q ss_pred             ccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHH
Q 015435          223 FASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIV  301 (407)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (407)
                      .....      +     ...+..++++|++|.++.+| ...|++   +.+++..+++..    .........++.....+
T Consensus       177 g~~~~------p-----l~~gaDivv~S~tK~l~G~~d~~gG~v---~~~~~~~~~l~~----~~~~~G~~l~p~~a~~~  238 (377)
T TIGR01324       177 GLLFK------P-----LEHGVDISIQAGTKYLVGHSDIMIGTV---VANARTWDQLRE----HSYLMGQMVDADDAYTT  238 (377)
T ss_pred             ccccC------c-----cccCceEEEecCceeccCCCCceEEEE---EeCHHHHHHHHH----HHHHhCCCCCHHHHHHH
Confidence            33210      1     11234689999999997544 455666   445554444332    22222234444444444


Q ss_pred             HHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Cccc----ccCCceeEEec-CC-CHHH
Q 015435          302 ATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSH----IIKQIGMFTFT-GL-NSEQ  364 (407)
Q Consensus       302 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~----~~~~~~~~~~~-~~-~~~~  364 (407)
                      ...++          .+..+.++..++...+.+.|++.+.      |.     ....    ....+++|.+. +- +.+.
T Consensus       239 ~rgl~----------tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~  308 (377)
T TIGR01324       239 LRGLR----------TLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQ  308 (377)
T ss_pred             Hhhhh----------hHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHH
Confidence            44433          2444456666777777888876542      11     0000    01236666654 22 3444


Q ss_pred             HHHhHhhc---cEEE---------c----------------CCC--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          365 VAFMTKEY---HIYM---------T----------------SDG--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       365 ~~~~l~~~---gi~~---------~----------------~gg--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ..++++.-   ++.+         .                +++  |+|++-   |+.+.+++-|.++|+.
T Consensus       309 ~~~~~~~l~~~~~~~slG~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svGl---E~~~dl~~dl~~al~~  376 (377)
T TIGR01324       309 VHAFLDHLQLFGLGYSWGGYESLALCNQPELGHRPNIKRNLEGPLIRVHIGL---ENVDDLKADLKAGFEA  376 (377)
T ss_pred             HHHHHHhCCcceEeccCCCccceeecCCCCCCHHHHHhccCCCCEEEEEeCC---CCHHHHHHHHHHHHhc
Confidence            44444432   2221         1                112  888773   7899999999998864

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.84  E-value=5.1e-18  Score=159.38  Aligned_cols=260  Identities=13%  Similarity=0.119  Sum_probs=170.6

Q ss_pred             CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435           99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA  174 (407)
Q Consensus        99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~  174 (407)
                      +..++  +++|++|+..+  ++..+.+||+|++++|.|.++..    .++..|+++..++.   .    +.+.+++++. 
T Consensus        80 ~~~v~--~sSG~aAi~~~--l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~---~----~~e~l~~al~-  147 (395)
T PRK05967         80 AGTIL--VPSGLAAVTVP--FLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDP---E----IGAGIAKLMR-  147 (395)
T ss_pred             CCEEE--ECcHHHHHHHH--HHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCC---C----CHHHHHHhcC-
Confidence            34555  67789999998  45668999999999999999875    44678998888753   1    3477888887 


Q ss_pred             CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435          175 APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN  254 (407)
Q Consensus       175 ~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
                       +++++|++ .+|+||++.   ..++++|+++|+++|+++|+|++|....+-      .++    . ....+++.|.+|.
T Consensus       148 -~~TklV~l-esPsNP~l~---v~dl~~I~~la~~~g~~vvVD~t~a~p~~~------~pl----~-~GaDivv~S~tKy  211 (395)
T PRK05967        148 -PNTKVVHT-EAPGSNTFE---MQDIPAIAEAAHRHGAIVMMDNTWATPLYF------RPL----D-FGVDISIHAATKY  211 (395)
T ss_pred             -cCceEEEE-ECCCCCCCc---HHHHHHHHHHHHHhCCEEEEECCccCceec------Chh----H-cCCCEEEEecccc
Confidence             67888777 899999876   789999999999999999999998754421      111    1 2345999999999


Q ss_pred             ccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 015435          255 MGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLF  333 (407)
Q Consensus       255 ~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (407)
                      ++..| .-.|++   +.+++..+++    ...........++..+..+..-++          .+..+.++..++...+.
T Consensus       212 ~~Gh~d~~~G~v---~~~~~~~~~l----~~~~~~~G~~~~p~da~l~~rgl~----------Tl~lR~~~~~~na~~lA  274 (395)
T PRK05967        212 PSGHSDILLGTV---SANEKCWPQL----LEAHGTLGLCAGPDDTYQILRGLR----------TMGIRLEHHRKSALEIA  274 (395)
T ss_pred             cCCCCCeeEEEE---EcCHHHHHHH----HHHHHHcCCCCCHHHHHHHHcCcc----------cHHHHHHHHHHHHHHHH
Confidence            76444 344544   5555543333    222222333445544444443333          34555667777888888


Q ss_pred             HHHHhcCC------CC-----Cccc----ccCCceeEEec-C-C---CHHHHHHhHhhccEE-EcC--C-----------
Q 015435          334 DALSARGT------PG-----DWSH----IIKQIGMFTFT-G-L---NSEQVAFMTKEYHIY-MTS--D-----------  379 (407)
Q Consensus       334 ~~l~~~~~------~~-----~~~~----~~~~~~~~~~~-~-~---~~~~~~~~l~~~gi~-~~~--g-----------  379 (407)
                      +.|++.+.      |.     ..+.    ....||++.|. + -   +.+.+.+++++-.+. ..+  |           
T Consensus       275 ~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sLi~~~~~  354 (395)
T PRK05967        275 RWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESLALHVKL  354 (395)
T ss_pred             HHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcceEccCCCCcceeeeeCCC
Confidence            88887642      11     0000    01236666654 2 1   345566666654442 111  1           


Q ss_pred             ------------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          380 ------------G--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 ------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                                  +  |||++-   |+.+.+++-|.++|+..
T Consensus       355 ~~~~~~~~~~~~~liRlSvGl---Ed~~dLi~Dl~~Al~~~  392 (395)
T PRK05967        355 GDRTVAKAPYAGPVIRLQIGL---EDVPDLKADLERGFAAA  392 (395)
T ss_pred             ChhHhhhccCCCCeEEEEecc---CCHHHHHHHHHHHHHhh
Confidence                        1  888773   78999999999988754

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.84  E-value=3e-18  Score=164.37  Aligned_cols=209  Identities=11%  Similarity=0.001  Sum_probs=144.0

Q ss_pred             eeeeeeecCCCccc-cchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHH
Q 015435           36 LGVGAYRTEEGKPL-VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLR  114 (407)
Q Consensus        36 l~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~  114 (407)
                      |++|.+..+...+. +.+.+.++.+.+.  . ....+++  -..+|++++++++ +.       +++++  ++|||+++.
T Consensus        28 ~~~~~~~ip~~~~~~~~~~~~a~~~~~~--~-~~~~~G~--~~~~fe~~lA~~~-g~-------~~~v~--~~sGt~al~   92 (438)
T PRK15407         28 FVPGKSPIPPSGKVIDAKELQNLVDASL--D-FWLTTGR--FNDAFEKKLAEFL-GV-------RYALL--VNSGSSANL   92 (438)
T ss_pred             ccCCCCCCCcCccCCCHHHHHHHHHHHH--h-CcccCCh--hHHHHHHHHHHHh-CC-------CeEEE--ECCHHHHHH
Confidence            57776533333222 3344555555553  1 1222222  2578999999998 53       57888  999999999


Q ss_pred             HHHHHHH-------hhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435          115 VGAEFLA-------RHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA  187 (407)
Q Consensus       115 ~~~~~~~-------~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p  187 (407)
                      +++..+.       .+.+||+|+++.++|..+...+...|++++.++++ +.++.+|++.+++.+.  +++++|++.+  
T Consensus        93 ~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd-~~~~~id~~~le~~i~--~~tkaVi~~~--  167 (438)
T PRK15407         93 LAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVE-LPTYNIDASLLEAAVS--PKTKAIMIAH--  167 (438)
T ss_pred             HHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHHcC--cCCeEEEEeC--
Confidence            9854332       34789999999999999999999999999999983 4568899999999987  6777777743  


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccC-CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS-GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                        ++|.   +.++++|.++|++||++||+|++++.... .+.     .   ....++-.++.+..+|.++ .|- -|++ 
T Consensus       168 --~~G~---p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~-----~---~G~~gd~~~fSf~~~k~~~-~ge-GG~l-  231 (438)
T PRK15407        168 --TLGN---PFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGR-----M---TGTFGDIATLSFYPAHHIT-MGE-GGAV-  231 (438)
T ss_pred             --CCCC---hhhHHHHHHHHHHCCCEEEEECccchhhhcCCe-----e---eeccCceEEEeCCCCCCcc-ccC-ceEE-
Confidence              4555   45789999999999999999999864432 211     1   1122333444444457675 354 3888 


Q ss_pred             EeecChhhHHHHHHH
Q 015435          267 IVCKTEDVASRVESQ  281 (407)
Q Consensus       267 ~v~~~~~~~~~~~~~  281 (407)
                       ++.|+++.+++...
T Consensus       232 -~t~d~~l~~~~~~~  245 (438)
T PRK15407        232 -FTNDPLLKKIIESF  245 (438)
T ss_pred             -EECCHHHHHHHHHH
Confidence             79988887765543

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.83  E-value=2.4e-18  Score=157.99  Aligned_cols=286  Identities=19%  Similarity=0.189  Sum_probs=191.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEe
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRY  155 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~  155 (407)
                      -..+|.+++++++ +.       .+.+.  +++||.|+.++++.+. +.+||+||+++.+|......+...|++++.+++
T Consensus        35 ~v~~FE~~~ae~~-G~-------k~ava--~~sgT~AL~laL~al~-ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDi  103 (374)
T COG0399          35 FVRRFEQAFAEYL-GV-------KYAVA--VSSGTAALHLALLALA-IGPGDEVIVPSFTFVATANAVLLVGAKPVFVDI  103 (374)
T ss_pred             HHHHHHHHHHHHh-CC-------CeEEE--ecChHHHHHHHHHhcC-CCCCCEEEecCCchHHHHHHHHHcCCeEEEEec
Confidence            4678999999998 64       67888  9999999999954334 789999999999999999999999999999999


Q ss_pred             ecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccccc-CCCCCchhHH
Q 015435          156 YDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFA-SGSLDADAQS  234 (407)
Q Consensus       156 ~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~-~~~~~~~~~~  234 (407)
                       |++++.+|++.++++|+  +++++|+.+.-..+|.       ++++|.++|++||++||+|++.+... +.+       
T Consensus       104 -d~~T~nid~~~ie~aIt--~~tKAIipVhl~G~~~-------dm~~i~~la~~~~l~vIEDaAqa~Ga~y~g-------  166 (374)
T COG0399         104 -DPDTLNIDPDLIEAAIT--PRTKAIIPVHLAGQPC-------DMDAIMALAKRHGLPVIEDAAQAHGATYKG-------  166 (374)
T ss_pred             -CCcccCCCHHHHHHHcc--cCCeEEEEehhccCCC-------CHHHHHHHHHHcCCeEEEEcchhccCeecC-------
Confidence             57789999999999999  6688877755555544       78889999999999999999975332 221       


Q ss_pred             HHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhc----cc------CCCChhHHHHHHHH
Q 015435          235 VRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRP----MY------SSPPIHGASIVATI  304 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~  304 (407)
                       ......++-.++.+=.+|.++ +| --|.+  ++.|+++.++++..-.+....    .+      ++.-.-.+.++...
T Consensus       167 -k~vGt~Gd~~~fSF~~~K~it-tg-EGGav--~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl  241 (374)
T COG0399         167 -KKVGSFGDIGAFSFHATKNLT-TG-EGGAV--VTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGL  241 (374)
T ss_pred             -cccccccceEEEEecCCCCcc-cc-CceEE--EeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHH
Confidence             112333455566666788888 55 45888  799998888776655544432    01      11112222222222


Q ss_pred             hcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccCC---ceeEEec------CCCHHHHHHhHhhccE
Q 015435          305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH-IIKQ---IGMFTFT------GLNSEQVAFMTKEYHI  374 (407)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~---~~~~~~~------~~~~~~~~~~l~~~gi  374 (407)
                      .   ++     +.+++..++-++..+...+.|+++..   +.. ..+.   ..++.+.      +.+.+.+...|++.||
T Consensus       242 ~---QL-----~~l~~~~~~R~~~a~~Y~~~l~~~~~---~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~gi  310 (374)
T COG0399         242 A---QL-----ERLDEINERRREIAQIYAEALKGLPG---ITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEAGV  310 (374)
T ss_pred             H---HH-----HHHHHHHHHHHHHHHHHHHHhhcCCC---ccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHhCCC
Confidence            1   11     22344444444455556666665531   111 1222   2233322      1456777788887755


Q ss_pred             E----EcCC--------------C----------eE-Ee---cCCCCCChhHHHHHHHHHHHh
Q 015435          375 Y----MTSD--------------G----------RI-SM---AGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       375 ~----~~~g--------------g----------Ri-s~---~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      .    ..|-              +          |+ ++   ..+++++++++++.|++++..
T Consensus       311 ~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         311 GAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             CceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence            3    3331              1          33 33   347889999999999998754

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.83  E-value=2.7e-18  Score=162.08  Aligned_cols=276  Identities=16%  Similarity=0.221  Sum_probs=175.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCceee
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGLSVK  151 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~~~~  151 (407)
                      ....|+++++++. +.       +..++  +++|+.++.++   +..+.+||+|++++|.|.+...    .+...|++++
T Consensus        51 ~~~~Le~~la~l~-g~-------~~al~--~~SG~~Al~~~---l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~  117 (380)
T PRK06176         51 TRFALEELIADLE-GG-------VKGFA--FASGLAGIHAV---FSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCT  117 (380)
T ss_pred             hHHHHHHHHHHHh-CC-------CCEEE--ECCHHHHHHHH---HHHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEE
Confidence            4778889999987 43       45566  77888899866   3457899999999999976644    3456788887


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      .++.       .|++++++++.  ++++++++ .+|+||||.+.+   +++|+++|+++|+++|+|++|+......    
T Consensus       118 ~vd~-------~d~e~l~~ai~--~~t~lV~l-esP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~~----  180 (380)
T PRK06176        118 IIDT-------SDLSQIKKAIK--PNTKALYL-ETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQN----  180 (380)
T ss_pred             EcCC-------CCHHHHHHhcC--cCceEEEE-ECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccCC----
Confidence            7754       37899999887  66788777 899999999764   7788888999999999999987544321    


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhh
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTM  310 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (407)
                        ++     .....++++|++|.++.+|..+ |++  ++.++++.+++    ...+.......++.....+...++.   
T Consensus       181 --p~-----~~gaDivv~S~tK~l~g~~d~~gG~v--v~~~~~~~~~~----~~~~~~~G~~~~~~~~~l~~~gl~t---  244 (380)
T PRK06176        181 --PL-----LLGADIVVHSGTKYLGGHSDVVAGLV--TTNNEALAQEI----AFFQNAIGGVLGPQDSWLLQRGIKT---  244 (380)
T ss_pred             --cc-----ccCCCEEEecCceeccCCccceeeEE--EecHHHHHHHH----HHHHHHhcCCCCHHHHHHHHhccCc---
Confidence              11     1134588999999998666544 445  55555544433    3333222222233333333322221   


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Cccc----ccCCceeEEecCCCHHHHHHhHhhccEE
Q 015435          311 YKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSH----IIKQIGMFTFTGLNSEQVAFMTKEYHIY  375 (407)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~gi~  375 (407)
                             +..+.++..++...+.+.|++.+.      |.     ....    ....||++.+.=-+.+.+.++++.-.+.
T Consensus       245 -------l~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~~~  317 (380)
T PRK06176        245 -------LGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLF  317 (380)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCcc
Confidence                   333444455566677777776531      11     0000    1123555554311345555666554442


Q ss_pred             E---cCC-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHhhC
Q 015435          376 M---TSD-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       376 ~---~~g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      -   .=|                             +  |+|++-   |+.+.+++-|+++|+..|
T Consensus       318 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dli~dl~~Al~~~~  380 (380)
T PRK06176        318 ILGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGI---EHEQDLLEDLEQAFAKIG  380 (380)
T ss_pred             eEccCCCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHhhcC
Confidence            2   101                             1  888873   889999999999998765

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.83  E-value=2e-18  Score=164.22  Aligned_cols=309  Identities=15%  Similarity=0.104  Sum_probs=188.9

Q ss_pred             cchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hcCCCe
Q 015435           50 VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLT  128 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~  128 (407)
                      ..+..+++.+.+.  ..   .|.......++++++++++ +.       ++.++  ++|||+|+.+++  ... +.+||+
T Consensus         9 ~~~~~~~v~~~~~--~~---~~~~g~~~~~le~~la~~~-g~-------~~~v~--~~sgt~al~~~l--~al~~~~Gd~   71 (380)
T TIGR03588         9 DQDDIDAVVEVLK--SD---FLTQGPTVPAFEEALAEYV-GA-------KYAVA--FNSATSALHIAC--LALGVGPGDR   71 (380)
T ss_pred             CHHHHHHHHHHHh--cC---CccCChhHHHHHHHHHHHH-CC-------CeEEE--EcCHHHHHHHHH--HHcCCCCCCE
Confidence            3345555555554  11   2333456789999999998 53       35666  778999999984  333 569999


Q ss_pred             EEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC--CCCcEEEEecCCCCCCCCCCCHHHHHHHHHH
Q 015435          129 IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--PSGAIVLLHACAHNPTGVDPTLEQWEQIRQL  206 (407)
Q Consensus       129 Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~  206 (407)
                      |+++.++|..+...+...|++++.+++. ++++.+|++++++.+++.  ++++++++    .|++|...   ++++|+++
T Consensus        72 Viv~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~d~~~l~~~i~~~~~~~t~~v~~----~~~~G~~~---~~~~i~~l  143 (380)
T TIGR03588        72 VWTTPITFVATANCALYCGAKVDFVDID-PDTGNIDEDALEKKLAAAKGKLPKAIVP----VDFAGKSV---DMQAIAAL  143 (380)
T ss_pred             EEeCCcchHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHHhhcccCCCceEEEE----eCCCCccC---CHHHHHHH
Confidence            9999999999999999999999999983 556789999999999732  34566554    45788754   58888899


Q ss_pred             HHHcCceeeecccccccc-CCCCCchhHHHHHHHHcCCcEEEEEec--CccccccCCCcceeEEeecChhhHHHHHHHHh
Q 015435          207 MRSKGLLPFFDSAYQGFA-SGSLDADAQSVRMFVADGGECLVAQSY--AKNMGLYGERVGALSIVCKTEDVASRVESQLK  283 (407)
Q Consensus       207 ~~~~~~~li~D~~y~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~  283 (407)
                      |++||++||+|++++... +.+.   ...  . ...+  .+.+.|+  +|.++. | ..|++  ++.++++.+++.....
T Consensus       144 ~~~~~~~lI~D~a~a~g~~~~~~---~~g--~-~~~~--d~~~~S~~~~K~~~~-~-~GG~v--~~~~~~~~~~~~~~~~  211 (380)
T TIGR03588       144 AKKHGLKIIEDASHALGAEYGGK---PVG--N-CRYA--DATVFSFHPVKIITT-A-EGGAV--TTNDEELAERMRLLRS  211 (380)
T ss_pred             HHHcCCEEEEECCCcccCccCCE---eCC--C-cccc--ceEEEecCCCCcccc-c-CceEE--EECCHHHHHHHHHHHH
Confidence            999999999999986542 2221   110  0 0122  3555555  488763 3 34666  6888877766554211


Q ss_pred             hhhhc------------ccCCCCh----hHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435          284 LVIRP------------MYSSPPI----HGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH  347 (407)
Q Consensus       284 ~~~~~------------~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  347 (407)
                      .....            +......    ..+....+++...+    + +.+++..++-+++.+++.+.|.+++.   +..
T Consensus       212 ~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~q----L-~~l~~~~~~r~~~~~~~~~~L~~~~~---~~~  283 (380)
T TIGR03588       212 HGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQ----L-KKLDRFVAKRREIAARYDRLLKDLPY---FTP  283 (380)
T ss_pred             CCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHhcCCCC---ccC
Confidence            11000            0000000    00011111111111    1 22455666667788888888887652   222


Q ss_pred             ccC-C---ceeEEe---cC----CCHHHHHHhHhhccEEEcCC----------------C----------e-EEec---C
Q 015435          348 IIK-Q---IGMFTF---TG----LNSEQVAFMTKEYHIYMTSD----------------G----------R-ISMA---G  386 (407)
Q Consensus       348 ~~~-~---~~~~~~---~~----~~~~~~~~~l~~~gi~~~~g----------------g----------R-is~~---~  386 (407)
                      ..+ .   .+++.+   +.    .+.+.+.+.|+++||.+...                +          | |++.   .
T Consensus       284 ~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~  363 (380)
T TIGR03588       284 LTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPA  363 (380)
T ss_pred             CCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCC
Confidence            211 1   122222   22    35677777778889977421                0          2 2332   2


Q ss_pred             CCCCChhHHHHHHHHHH
Q 015435          387 LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l  403 (407)
                      ++++|++++++.|++++
T Consensus       364 l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       364 LTLEQQQRVVETLRKVL  380 (380)
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            57788999998888764

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.83  E-value=2.5e-18  Score=165.64  Aligned_cols=336  Identities=16%  Similarity=0.127  Sum_probs=202.4

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++++||+..|....+.| ..++++++++.+++.  ..... ..+.....++.+.+++.+.+       .+.+.+  ++
T Consensus        96 ~dG~~yiD~~~g~g~~~lG-h~~p~v~~av~~ql~--~~~~~-~~~~~~~~~lAe~l~~~~p~-------~~~v~f--~~  162 (474)
T PLN02482         96 VDGNEYIDYVGSWGPAIIG-HADDEVLAALAETMK--KGTSF-GAPCLLENVLAEMVIDAVPS-------VEMVRF--VN  162 (474)
T ss_pred             CCCCEEEEecccccccccC-CCCHHHHHHHHHHHh--hCCCC-CCCCHHHHHHHHHHHHhCCC-------CCEEEE--eC
Confidence            4578999999886544566 667788888888886  22222 12222233455555554411       278999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhh-c-------------Cc------eeeEEEeecCCCCCcChhh
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTL-A-------------GL------SVKTYRYYDPATRGLNFQG  167 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~-~-------------G~------~~~~v~~~~~~~~~~d~~~  167 (407)
                      +||+|.+.++++.+.....++|+...-+|+++.+.+.. .             |.      .+..+    +.   -|++.
T Consensus       163 SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~---nd~~~  235 (474)
T PLN02482        163 SGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTA----PY---NDLEA  235 (474)
T ss_pred             ChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEe----cC---CChHH
Confidence            99999999998887776567888888889887643221 0             10      01111    11   16788


Q ss_pred             HHHHHHcCCCC-cEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          168 LLEDLRAAPSG-AIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       168 l~~~i~~~~~~-~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +++.+.+.+.. .++++ -....-.|.+ .+++.+++|.++|++||+++|+||+..+| ..+   .......+.- ..++
T Consensus       236 l~~~l~~~~~~iAavI~-Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g---~~ga~~~~gv-~PDi  309 (474)
T PLN02482        236 VKKLFEANKGEIAAVIL-EPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIA---YGGAQEYFGI-TPDL  309 (474)
T ss_pred             HHHHHHhCCCceEEEEE-CCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecC---cchHhHHhCC-CCCE
Confidence            88888644333 44444 3334445665 45789999999999999999999999877 432   1222222221 1222


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                         .+++|.++ .|+++|.+  ++. +++.+.+.. ........+++.+++++.++.+.|+...      +  +...+++
T Consensus       310 ---~t~gK~lg-gG~Pigav--~g~-~ei~~~~~~-~~~~~~~~T~~gnpl~~aAala~L~~l~------~--~~~~~~~  373 (474)
T PLN02482        310 ---TTLGKVIG-GGLPVGAY--GGR-REIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLQ------Q--PGTYEYL  373 (474)
T ss_pred             ---EEecchhh-CCCceEEE--EEc-HHHHHhhcc-CCCcccccCcchhHHHHHHHHHHHHHHh------c--cCHHHHH
Confidence               36899998 78999998  454 444333221 0111122344567777777776665321      1  2345566


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccc-cCCceeEEe-c--C-C---------CHH---HHHHhHhhccEEEcCCC----eEEe
Q 015435          326 ISMRQQLFDALSARGTPGDWSHI-IKQIGMFTF-T--G-L---------NSE---QVAFMTKEYHIYMTSDG----RISM  384 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~-~--~-~---------~~~---~~~~~l~~~gi~~~~gg----Ris~  384 (407)
                      .++.++|.+.|+++.....+.+. ...++++.+ .  + .         +.+   .+.+.+.++||.+.+.+    .+++
T Consensus       374 ~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~~~psl  453 (474)
T PLN02482        374 DKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEAGFTSL  453 (474)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCCCcCCC
Confidence            66666776666654311112222 222334321 1  1 0         111   23344455899998864    2456


Q ss_pred             cCCCCCChhHHHHHHHHHHHhh
Q 015435          385 AGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       385 ~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .. +++||+++++++.++++++
T Consensus       454 ~h-t~~dId~~l~al~~~l~~~  474 (474)
T PLN02482        454 AH-TEEDIDFTIAAAERVLARI  474 (474)
T ss_pred             CC-CHHHHHHHHHHHHHHHHhC
Confidence            64 9999999999999998763

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.83  E-value=1.5e-18  Score=163.69  Aligned_cols=281  Identities=16%  Similarity=0.107  Sum_probs=180.3

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeE
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKT  152 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~  152 (407)
                      ......++++.+++++ +.       +++++  ++|||+++..++..+ .+.+||+|+++.++|..+...+...|.+++.
T Consensus        16 ~~~~~~~~~~~la~~~-~~-------~~~~~--~~sgt~al~~~l~~l-~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~   84 (352)
T cd00616          16 LGPKVREFEKAFAEYL-GV-------KYAVA--VSSGTAALHLALRAL-GIGPGDEVIVPSFTFVATANAILLLGATPVF   84 (352)
T ss_pred             CCHHHHHHHHHHHHHh-CC-------CeEEE--ECCHHHHHHHHHHHc-CCCCCCEEEeCCcchHHHHHHHHHcCCeEEE
Confidence            3446889999999998 53       56888  889999999984222 1468999999999999999999999999999


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      ++.+ +.++.+|++++++.+.  ++++++++    .||+|...   ++++|.++|+++|+++|+|++++.......  . 
T Consensus        85 ~~~~-~~~~~~d~~~l~~~i~--~~~~~v~~----~~~~G~~~---~~~~i~~l~~~~~i~li~D~a~~~g~~~~~--~-  151 (352)
T cd00616          85 VDID-PDTYNIDPELIEAAIT--PRTKAIIP----VHLYGNPA---DMDAIMAIAKRHGLPVIEDAAQALGATYKG--R-  151 (352)
T ss_pred             EecC-CCcCCcCHHHHHHhcC--cCCeEEEE----ECCCCCcC---CHHHHHHHHHHcCCeEEEECCCCCCCeECC--E-
Confidence            9983 4467889999999886  56777766    25799865   477788889999999999999863322100  0 


Q ss_pred             HHHHHHHHcCCcEEEEEecC--ccccccCCCcceeEEeecChhhHHHHHHHHhhhhhc-----------ccCCCChhHHH
Q 015435          233 QSVRMFVADGGECLVAQSYA--KNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRP-----------MYSSPPIHGAS  299 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~s--K~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  299 (407)
                       .   +...  ..+.+.|++  |.++  +.+.|++  +++++++.+++..........           .....+.+...
T Consensus       152 -~---~~~~--~d~~~~S~~~~K~~~--~~~gg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa  221 (352)
T cd00616         152 -K---VGTF--GDAGAFSFHPTKNLT--TGEGGAV--VTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAA  221 (352)
T ss_pred             -E---cccC--cceeEEcCCCCCCCc--ccCceEE--EECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHH
Confidence             0   0111  135566665  8774  3345777  677766665543321111000           00011222222


Q ss_pred             HHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC------CceeEEec-----CCCHHHHHHh
Q 015435          300 IVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK------QIGMFTFT-----GLNSEQVAFM  368 (407)
Q Consensus       300 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~~~~~~  368 (407)
                      .....+          +.+++..++.+++.+++.+.|++++.   +.+..+      ...++.+.     +.+.+.+.+.
T Consensus       222 ~~~~~l----------~~~~~~~~~~~~~~~~~~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  288 (352)
T cd00616         222 IGLAQL----------EKLDEIIARRREIAERYKELLADLPG---IRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEA  288 (352)
T ss_pred             HHHHHH----------HhhHHHHHHHHHHHHHHHHHhcCCCC---ccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHH
Confidence            221111          23456667778899999999988632   443321      11233322     2466777777


Q ss_pred             HhhccEEEcCC-----------------------------C--eEEecC-CCCCChhHHHHHHH
Q 015435          369 TKEYHIYMTSD-----------------------------G--RISMAG-LSSKTVPHLTDAIH  400 (407)
Q Consensus       369 l~~~gi~~~~g-----------------------------g--Ris~~~-~~~e~i~~~~~~l~  400 (407)
                      |+++||.+...                             +  |+++.. .+++|+++++++|+
T Consensus       289 L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         289 LKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             HHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence            77789965310                             1  555543 57788888888763

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK06062 hypothetical protein; Provisional

Probab=99.83  E-value=3.8e-18  Score=164.39  Aligned_cols=347  Identities=13%  Similarity=0.082  Sum_probs=205.1

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ..+++++||+..|....+.| ..++++++++.+++. ..... ..| ......++.+.+++...+      ..+.+++  
T Consensus        49 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~-~~~~~~~~~-~~~~~~~lae~L~~~~p~------~~~~v~f--  117 (451)
T PRK06062         49 DYEGRRYLDFSSQLVNTNIG-HQHPKVVAAIQEQAA-RLCTVAPAH-ANDARSEAARLIAERAPG------DLSKVFF--  117 (451)
T ss_pred             ECCCCEEEEcccCHHhhcCC-CCCHHHHHHHHHHHH-hcCCcCCcc-CCHHHHHHHHHHHHhCCC------CCCEEEE--
Confidence            45679999999987655567 667788888888886 21111 112 222334555556554411      1268999  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-Cc-----------eeeEEEeecCCC--CC--cC-----
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-GL-----------SVKTYRYYDPAT--RG--LN-----  164 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G~-----------~~~~v~~~~~~~--~~--~d-----  164 (407)
                      ++||++|++.++++.+......+|+...-+|++........ |.           .+..++..+...  +.  -|     
T Consensus       118 ~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  197 (451)
T PRK06062        118 TNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECE  197 (451)
T ss_pred             cCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHH
Confidence            99999999999988877655567888888888775543321 11           112222211100  00  12     


Q ss_pred             --hhhHHHHHHcC--CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH
Q 015435          165 --FQGLLEDLRAA--PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV  239 (407)
Q Consensus       165 --~~~l~~~i~~~--~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~  239 (407)
                        ++.+++.+...  .+..++++-+ .+.-.|.+ .+.+.+++|.++|++||+++|+||+..+|+..+   ..+....+.
T Consensus       198 ~~~~~le~~l~~~~~~~iAaviiEP-v~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG---~~~a~~~~g  273 (451)
T PRK06062        198 RALAHLERVIELEGPSTIAAILLES-VPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTG---KWFAIEHFG  273 (451)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCc---HHHHHHhcC
Confidence              56677777532  2234555533 33334555 688999999999999999999999999887654   233333332


Q ss_pred             HcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435          240 ADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLEL  318 (407)
Q Consensus       240 ~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  318 (407)
                      -. .+   +.+++|.++ .| +++|.+  ++. +++.+.+..  ..+....+++.+++++.++.+.|+...      +  
T Consensus       274 v~-PD---i~t~gK~lg-gG~~Pigav--~~~-~~i~~~~~~--~~~~~~~T~~gnpl~~Aaa~a~L~~l~------~--  335 (451)
T PRK06062        274 VV-PD---LITFAKGVN-SGYVPLGGV--AIS-EAIAATFAD--RPYPGGLTYSGHPLACAAAVATINAME------E--  335 (451)
T ss_pred             CC-CC---eeeechhhh-cCCcCcEEE--EEc-HHHHHHhcc--CCCCCCCCCCCCHHHHHHHHHHHHHHH------h--
Confidence            22 22   335899998 67 489998  565 344333321  011222355677888888887776331      1  


Q ss_pred             HHHHHHHHHHH-HHHHHHHHhcCCCC-CcccccCCceeEEec--C-------CC--------HHHHHHhHhhccEEEcCC
Q 015435          319 KAMADRIISMR-QQLFDALSARGTPG-DWSHIIKQIGMFTFT--G-------LN--------SEQVAFMTKEYHIYMTSD  379 (407)
Q Consensus       319 ~~~~~~~~~~~-~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~--~-------~~--------~~~~~~~l~~~gi~~~~g  379 (407)
                      +.+.++.+++. +++.+.|+++-... .+..+...|.++.+.  .       ++        ...+...+.++||.+.+.
T Consensus       336 ~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~  415 (451)
T PRK06062        336 EGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN  415 (451)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec
Confidence            12445555554 46666665541100 011223334333221  0       00        123444555689998765


Q ss_pred             C---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          380 G---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 g---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +   ||+..- +++++++++++++.++++++
T Consensus       416 ~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~  446 (451)
T PRK06062        416 GNRIHVVPPCTVTEDEVREGLAILDAALAVA  446 (451)
T ss_pred             CCEEEEECCccCCHHHHHHHHHHHHHHHHHh
Confidence            4   676532 58899999999999998764

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.83  E-value=2e-19  Score=164.68  Aligned_cols=231  Identities=17%  Similarity=0.132  Sum_probs=154.0

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeE
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKT  152 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~  152 (407)
                      |..-+.++++.+++++ +..      +-+++  |+|+|+++.++  +...+.+||+|+++.++|.+....+...|++++.
T Consensus        57 ~~g~i~~~~~~~A~~~-ga~------~~~~~--~~Gst~a~~~~--l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~  125 (294)
T cd00615          57 PTGPIKEAQELAARAF-GAK------HTFFL--VNGTSSSNKAV--ILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVY  125 (294)
T ss_pred             CChHHHHHHHHHHHHh-CCC------CEEEE--cCcHHHHHHHH--HHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEE
Confidence            4445788889999988 531      34556  89999999888  4556889999999999999999999999999999


Q ss_pred             EEeecCCC----CCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccc-cCCC
Q 015435          153 YRYYDPAT----RGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGF-ASGS  227 (407)
Q Consensus       153 v~~~~~~~----~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~-~~~~  227 (407)
                      ++......    ..+|++++++++.+.++.+++++ ++| ||||++++   +++|+++|+++|+++|+|++|... .+.+
T Consensus       126 v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l-~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~  200 (294)
T cd00615         126 LKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVI-TNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHP  200 (294)
T ss_pred             ecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEE-ECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCc
Confidence            87632222    37899999999975455677777 677 79999875   788999999999999999998643 3321


Q ss_pred             CCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecCh-hhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhc
Q 015435          228 LDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTE-DVASRVESQLKLVIRPMYSSPPIHGASIVATILK  306 (407)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  306 (407)
                      .    .+..  .......+++.|++|.+  +|++.|++. ..+++ ....++...+...   .+.+++...+.++..+++
T Consensus       201 ~----~~~~--~~~~~~div~~S~hK~l--~g~~~~~~l-~~~~~~~~~~~~~~~~~~~---~ttsps~~~~asl~~a~~  268 (294)
T cd00615         201 I----LPSS--AAMAGADIVVQSTHKTL--PALTQGSMI-HVKGDLVNPDRVNEALNLH---QSTSPSYLILASLDVARA  268 (294)
T ss_pred             c----cCcc--hhhcCCcEEEEchhccc--chHhHHHHH-HhCCCcCCHHHHHHHHHHH---CCCCcHHHHHHHHHHHHH
Confidence            1    1111  11235679999999975  677776652 34332 1123333332222   233455444444443333


Q ss_pred             ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          307 DSTMYKEWTLELKAMADRIISMRQQLFDALS  337 (407)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  337 (407)
                      -.      ...-++..+++.++.+.+++.++
T Consensus       269 ~~------~~~g~~~~~~~~~~~~~~r~~l~  293 (294)
T cd00615         269 MM------ALEGKELVEELIELALYARQEIN  293 (294)
T ss_pred             HH------HHHhHHHHHHHHHHHHHHHHHHh
Confidence            11      12233455566666677776654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.83  E-value=7.2e-18  Score=160.04  Aligned_cols=310  Identities=20%  Similarity=0.213  Sum_probs=200.2

Q ss_pred             cccchhHHHHHHHHhcccccc--ccCCC----CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH
Q 015435           48 PLVLNVVRKAEQLLVNDQSRV--KEYLP----IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA  121 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~--~~y~~----~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~  121 (407)
                      +.|..+++++...+.......  ..+..    ..-+.++|+.+++++ +...    +++|++  ++|+|.+++.++..+.
T Consensus        10 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~l-g~~~----~~~v~~--~~~~t~a~~~~~~~l~   82 (371)
T PF00266_consen   10 PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLL-GAPP----DEEVVF--TSNGTEALNAVASSLL   82 (371)
T ss_dssp             B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHH-TSST----TEEEEE--ESSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhc-CCcc----cccccc--ccccchhhhhhhhccc
Confidence            456677777766654111111  11111    113568889999988 4321    268999  9999999999853332


Q ss_pred             h-hcCCCeEEecCCCCCChHH----HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCC
Q 015435          122 R-HYHQLTIYIPQPTWGNHPK----VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPT  196 (407)
Q Consensus       122 ~-~~~gd~Vi~~~p~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~  196 (407)
                      . +.+||+|++.+-.|++...    ..+..|.+++.++.  +.+..+|++++++.+.  +++.++++ +..+|.||+..+
T Consensus        83 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~--~~~~~~~~~~~~~~l~--~~~~lv~~-~~~~~~tG~~~p  157 (371)
T PF00266_consen   83 NPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPA--DPGGSLDLEDLEEALN--PDTRLVSI-SHVENSTGVRNP  157 (371)
T ss_dssp             HHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEE--GTTSSCSHHHHHHHHH--TTESEEEE-ESBETTTTBBSS
T ss_pred             cccccccccccccccccccccccccccccchhhhccccc--cccchhhhhhhhhhhc--cccceEEe-ecccccccEEee
Confidence            1 6799999999988887763    33367999999998  3456889999999998  77888888 778899999765


Q ss_pred             HHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHH
Q 015435          197 LEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVAS  276 (407)
Q Consensus       197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~  276 (407)
                         +++|.++|+++|+++++|.+++.... +.+         ....+..++++|..|..|.+|  +|++  ... ++..+
T Consensus       158 ---i~~I~~~~~~~~~~~~vD~~~~~g~~-~id---------~~~~~~D~~~~s~~Kl~gp~G--~g~l--~v~-~~~~~  219 (371)
T PF00266_consen  158 ---IEEIAKLAHEYGALLVVDAAQSAGCV-PID---------LDELGADFLVFSSHKLGGPPG--LGFL--YVR-PEAIE  219 (371)
T ss_dssp             ---HHHHHHHHHHTTSEEEEE-TTTTTTS-S-----------TTTTTESEEEEESTSTTSSST--EEEE--EEE-HHHHH
T ss_pred             ---eceehhhhhccCCceeEechhccccc-ccc---------ccccccceeeecccccCCCCc--hhhh--eeh-hhhhh
Confidence               77888889999999999998653332 121         122345678999999555454  6777  354 33333


Q ss_pred             HHHHHHhhh-----------------hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435          277 RVESQLKLV-----------------IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR  339 (407)
Q Consensus       277 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  339 (407)
                      ++.......                 .+....+++.....++..+++...     ....++.+++..+..+++.+.|.++
T Consensus       220 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~l~~~~~~~l~~~  294 (371)
T PF00266_consen  220 RLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLE-----EIGIERIRERIRELAEYLREALEEL  294 (371)
T ss_dssp             HHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhh-----ccccccchhhhhhHHHHHHhhhhcC
Confidence            331111000                 001112455555555554443221     2356788899999999999999998


Q ss_pred             CCCCCccccc-----CCceeEE--ecCCCHHHHHHhHhhccEEEcCC--------------C--eEEecC-CCCCChhHH
Q 015435          340 GTPGDWSHII-----KQIGMFT--FTGLNSEQVAFMTKEYHIYMTSD--------------G--RISMAG-LSSKTVPHL  395 (407)
Q Consensus       340 ~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~l~~~gi~~~~g--------------g--Ris~~~-~~~e~i~~~  395 (407)
                      +.   +.+..     ..++...  +.+.+.+.+...|++.||.+..|              |  |+|+.. .+++|++++
T Consensus       295 ~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  295 PG---IEVLGPDDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             TT---EEESSSSCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred             Cc---eeEeeecccccccceEEEeecCCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence            64   34322     2334433  34778888888888789999873              2  999876 356777764

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PLN02651 cysteine desulfurase

Probab=99.83  E-value=1.8e-18  Score=163.58  Aligned_cols=259  Identities=20%  Similarity=0.155  Sum_probs=168.0

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH--hhcCCCeEEecCCCCCChHHHH---hhcCceee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA--RHYHQLTIYIPQPTWGNHPKVF---TLAGLSVK  151 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~--~~~~gd~Vi~~~p~y~~~~~~~---~~~G~~~~  151 (407)
                      +.++|+.+++++ +.     ++++|++  |+|+|+++.+++..+.  ...+||+|+++...|+.+...+   +..|++++
T Consensus        45 ~~~~r~~la~~~-g~-----~~~~v~~--t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~  116 (364)
T PLN02651         45 VEKARAQVAALI-GA-----DPKEIIF--TSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVT  116 (364)
T ss_pred             HHHHHHHHHHHh-CC-----CCCeEEE--eCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEE
Confidence            567788888877 42     2478999  9999999888753332  1357999999998887654443   35689999


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      .++.  +.++.+|++++++.++  ++++++++ ++++||||.+.+   +++|+++|+++|+++++|.+++.... +.+  
T Consensus       117 ~v~~--~~~~~~d~~~l~~~i~--~~t~lv~v-~~~~n~tG~~~~---l~~I~~~~~~~g~~~~vD~a~~~g~~-~~~--  185 (364)
T PLN02651        117 YLPV--KSDGLVDLDELAAAIR--PDTALVSV-MAVNNEIGVIQP---VEEIGELCREKKVLFHTDAAQAVGKI-PVD--  185 (364)
T ss_pred             EEcc--CCCCcCCHHHHHHhcC--CCcEEEEE-ECCCCCceeccc---HHHHHHHHHHcCCEEEEEcchhhCCc-ccC--
Confidence            9988  3456789999999997  56777766 899999999765   77888889999999999999753322 111  


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh---hhcccCCCChhHHHHHHHHhcCh
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV---IRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                         +    ...+..+++.|..|.+|.  ..+|++  +++++ ....+.......   ......+++..+..++..+++-.
T Consensus       186 ---~----~~~~~D~~~~s~hK~~gp--~G~g~l--~v~~~-~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~  253 (364)
T PLN02651        186 ---V----DDLGVDLMSISGHKIYGP--KGVGAL--YVRRR-PRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELA  253 (364)
T ss_pred             ---c----ccCCCCEEEechhhhCCC--CceEEE--EEcCC-CCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHH
Confidence               1    122346788889996443  346787  45532 111111111100   01122355666666666555432


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcccccC------CceeEE--ecCCCHHHHHHhHhhccEEEc
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWSHIIK------QIGMFT--FTGLNSEQVAFMTKEYHIYMT  377 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~l~~~gi~~~  377 (407)
                            .+..++.+++.++.++++.+.+.+ ++.   +.+..+      ..+...  +.+.+.+.+...|.+  |.+.
T Consensus       254 ------~~~~~~i~~~~~~l~~~l~~~l~~~~~~---~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~--i~v~  320 (364)
T PLN02651        254 ------MKEMDYDEKHMKALRERLLNGLRAKLGG---VRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKE--VAVS  320 (364)
T ss_pred             ------HHhHHHHHHHHHHHHHHHHHHHHhhCCC---EEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCC--EEEE
Confidence                  133467778888999999998875 321   443332      123333  346777777766664  7664

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.82  E-value=4.8e-18  Score=160.98  Aligned_cols=155  Identities=19%  Similarity=0.186  Sum_probs=116.1

Q ss_pred             CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCC
Q 015435           99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSG  178 (407)
Q Consensus        99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~  178 (407)
                      +++++  |+||++++.+++.. ..+.+||+|+++.|+|..+...+...|++++.++++ ++++.+|++++++.+.  +++
T Consensus        47 ~~~v~--~~sgt~al~~~l~~-~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d-~~~~~~d~~~le~~i~--~~t  120 (375)
T PRK11706         47 AKVLL--TPSCTAALEMAALL-LDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR-PDTMNIDETLIEAAIT--PKT  120 (375)
T ss_pred             CeEEE--ECCHHHHHHHHHHH-hCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHhcC--CCC
Confidence            68999  99999999887422 235799999999999999999999999999999984 5557899999999987  567


Q ss_pred             cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccccc-CCCCCchhHHHHHHHHcCCcEEEEEecC--ccc
Q 015435          179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFA-SGSLDADAQSVRMFVADGGECLVAQSYA--KNM  255 (407)
Q Consensus       179 ~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~s--K~~  255 (407)
                      +++++ +   |+||...   ++++|.++|++||++||+|++|+.+. +++.     .+   ...+  .+.+.||.  |.+
T Consensus       121 k~i~~-~---~~~G~~~---~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~-----~~---g~~~--~~~~~Sf~~~K~l  183 (375)
T PRK11706        121 RAIVP-V---HYAGVAC---EMDTIMALAKKHNLFVVEDAAQGVMSTYKGR-----AL---GTIG--HIGCFSFHETKNY  183 (375)
T ss_pred             eEEEE-e---CCCCCcc---CHHHHHHHHHHcCCEEEEECccccccccCCe-----ee---ecCc--CEEEEeCCCCccc
Confidence            77666 2   5789854   57888889999999999999987665 2221     11   1111  23334444  999


Q ss_pred             cccCCCcceeEEeecChhhHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVES  280 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~  280 (407)
                      + +|.+.+++   +.++++.+++..
T Consensus       184 ~-~g~gG~~~---~~~~~~~~~~~~  204 (375)
T PRK11706        184 T-AGEGGALL---INDPALIERAEI  204 (375)
T ss_pred             c-ccCCeEEE---ECCHHHHHHHHH
Confidence            7 57775554   777777765544

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.82  E-value=6.8e-18  Score=162.36  Aligned_cols=344  Identities=13%  Similarity=0.092  Sum_probs=204.1

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc--cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK--EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ..+++++||+..|....+.| ..++.+++++.+++. ......  .| +.....++.+.+++.. ...    ..+.+++ 
T Consensus        50 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~-~~~~~~~~~~-~~~~~~~lAe~L~~~~-p~~----~~~~v~f-  120 (441)
T PRK05769         50 DVDGNVYLDFNAGIAVTNVG-HAHPKVVKAVKEQAE-KFLHYSLTDF-YYEPAVELAERLVEIA-PGG----FEKKVFF-  120 (441)
T ss_pred             eCCCCEEEECCCchhhcccC-CCCHHHHHHHHHHHH-hccCccCccc-CCHHHHHHHHHHHHhC-CCC----CCCEEEE-
Confidence            34678999999997666677 667788888888886 211111  12 1222344555555544 210    0268999 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-Cc-------------eeeEEEeecCCCC--C-c----
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-GL-------------SVKTYRYYDPATR--G-L----  163 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~~~~--~-~----  163 (407)
                       ++||++|++.++++.+.....++|+...-+|++........ |.             .+..++..+....  . -    
T Consensus       121 -~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (441)
T PRK05769        121 -TNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEE  199 (441)
T ss_pred             -CCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHH
Confidence             99999999999988877655568888888888776543321 11             1222332110000  0 0    


Q ss_pred             ----ChhhHHH-HHHc---CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435          164 ----NFQGLLE-DLRA---APSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS  234 (407)
Q Consensus       164 ----d~~~l~~-~i~~---~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~  234 (407)
                          .++.+++ .+..   ..+..++++ -......|.. .+++.+++|.++|++||+++|+||++.+++..+   ..+.
T Consensus       200 ~~~~~~~~le~~~~~~~~~~~~iaavi~-Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G---~~~a  275 (441)
T PRK05769        200 CGNAVLDFIEDYLFKKLVPPEEVAAIIV-EPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTG---KMFA  275 (441)
T ss_pred             HHHHHHHHHHHHHHhhccCCCceEEEEE-CcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---ceeh
Confidence                1233554 2221   123344444 3333345664 678899999999999999999999999887654   2222


Q ss_pred             HHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhH
Q 015435          235 VRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEW  314 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  314 (407)
                      ...+. ...+++   +++|.++ .|+++|++  +++ +    ++....... ...+.+.+++++.++.+.|+-..     
T Consensus       276 ~~~~g-v~pDiv---t~~K~l~-~G~p~gav--~~~-~----~i~~~~~~~-~~~T~~g~p~~~aaa~a~L~~l~-----  337 (441)
T PRK05769        276 IEHFG-VEPDII---TLAKAIA-GGLPLGAV--IGR-A----ELMFLPPGS-HANTFGGNPVAAAAALATLEELE-----  337 (441)
T ss_pred             hhccC-CCCCEE---EEccccc-CCcccEEE--EEe-h----hhhhcCCCC-CCCCCCcCHHHHHHHHHHHHHHH-----
Confidence            22221 112333   4799999 78999998  455 3    333322212 22344567888888887776331     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcccccCCceeEEe--cCC----CH---HHHHHhHhhccEEEcCCC----
Q 015435          315 TLELKAMADRIISMRQQLFDALSARGTPG-DWSHIIKQIGMFTF--TGL----NS---EQVAFMTKEYHIYMTSDG----  380 (407)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~--~~~----~~---~~~~~~l~~~gi~~~~gg----  380 (407)
                       +   ...++++++.++|.+.|+++.... ....+...|.++.+  ..-    +.   ..+...+.++||.+.+.|    
T Consensus       338 -~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~~~~l  413 (441)
T PRK05769        338 -E---GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAGKSAI  413 (441)
T ss_pred             -H---HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEecCCCCEE
Confidence             1   556677777788888777653110 01122223333331  111    11   223344456899998865    


Q ss_pred             eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |++... ++++|++++++++.++++++
T Consensus       414 r~~p~l~~t~~~id~~~~~l~~~l~~~  440 (441)
T PRK05769        414 RIIPPLIITEEEADIGLEILEEAIKEL  440 (441)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            666543 58899999999999998764

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.82  E-value=1.3e-17  Score=148.48  Aligned_cols=314  Identities=18%  Similarity=0.133  Sum_probs=197.5

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL  127 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd  127 (407)
                      +.|.+.+.+++.+..  ......|+...-...+.+.+++.+ ++       ..++|  +++||+++.++  +...+++|+
T Consensus        10 ~g~~~~m~eam~~a~--~~~~~~YG~D~~~~~~e~~~ae~~-g~-------~a~~F--v~sGT~aN~la--l~~~~~~~~   75 (342)
T COG2008          10 AGPTPEMREALAAAN--AVGDDVYGEDPTTNALEQRIAELF-GK-------EAALF--VPSGTQANQLA--LAAHCQPGE   75 (342)
T ss_pred             CCCCHHHHHHHHhcc--ccCCCCCCCCHHHHHHHHHHHHHh-CC-------ceEEE--ecCccHHHHHH--HHHhcCCCC
Confidence            557777777766654  234445766655666666666666 54       68999  99999999999  455588999


Q ss_pred             eEEecCCCCCChHH--HHhhcCceeeEEEeecCCCCCcChhhHHHHHHc----CCCCcEEEEecCCCCCCCCCCCHHHHH
Q 015435          128 TIYIPQPTWGNHPK--VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA----APSGAIVLLHACAHNPTGVDPTLEQWE  201 (407)
Q Consensus       128 ~Vi~~~p~y~~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~----~~~~~~v~i~~~p~NPtG~~~~~~~l~  201 (407)
                      .|++..-+|.....  ..+.++ .+..++..+..++.++++++++.+..    +..++++++. +.+|..|+++|+++++
T Consensus        76 ~vi~~~~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e-~~~te~GtVy~l~el~  153 (342)
T COG2008          76 SVICHETAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLE-NTATEGGTVYPLDELE  153 (342)
T ss_pred             eEEEeccccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEe-eccCCCceecCHHHHH
Confidence            99999887764433  233332 22333443345688999999998862    3456676663 4455669999999999


Q ss_pred             HHHHHHHHcCceeeecccc--ccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHH
Q 015435          202 QIRQLMRSKGLLPFFDSAY--QGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVE  279 (407)
Q Consensus       202 ~i~~~~~~~~~~li~D~~y--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~  279 (407)
                      +|.++|++||+.|.+|.+-  ......+     .+...+...  ..++..++||..+.|   +|.+  +..|.++..++.
T Consensus       154 ~i~~~~k~~~l~LHmDGAR~~nA~valg-----~~~~~~~~~--~D~v~~~~tK~g~~~---~gAi--v~gn~~~~~~a~  221 (342)
T COG2008         154 AISAVCKEHGLPLHMDGARLANALVALG-----VALKTIKSY--VDSVSFCLTKGGGAP---VGAI--VFGNRDFAKRAR  221 (342)
T ss_pred             HHHHHHHHhCCceeechHHHHHHHHHcC-----CCHHHHHhh--CCEEEEecccCCcce---eeeE--EEcCHHHHHHHH
Confidence            9999999999999999994  2233222     122223222  234555689987655   5888  788887666654


Q ss_pred             HHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEec
Q 015435          280 SQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFT  358 (407)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~  358 (407)
                      ...+...+.+  .-..+.......+|++.-    |    .....+-.++...|.+.+++. |    +++..|.-...+|+
T Consensus       222 ~~rK~~Ggl~--~k~r~laA~~~~~l~~~~----~----~~~~~Han~mA~~La~~~~~~~G----~~~~~~~~tN~vf~  287 (342)
T COG2008         222 RWRKRAGGLM--RKARFLAAQGLYALEDDV----W----RLAADHANAMAARLAEGLEAKPG----VKLAFPVETNMVFV  287 (342)
T ss_pred             HHHHHhcccH--hhhhHHHHHHHHHHhccH----H----HHHHHHHHHHHHHHHHhhhhcCC----ceeccCCcccEEEE
Confidence            4333322111  222333333444455431    1    122244456688999999855 6    55544323334555


Q ss_pred             CCCHHHH-----HHhHhhccEEEcCCC---eEEecC-CCCCChhHHHHHHHHHH
Q 015435          359 GLNSEQV-----AFMTKEYHIYMTSDG---RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       359 ~~~~~~~-----~~~l~~~gi~~~~gg---Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      .++...+     ...+...|+.+.+.+   |+..+. .++++++.++..+++++
T Consensus       288 ~l~~~~i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         288 RLPESAIEALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             ECChHHHHHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            5543222     234444677777765   775443 58899999999988764

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.82  E-value=6e-18  Score=161.63  Aligned_cols=349  Identities=11%  Similarity=0.032  Sum_probs=203.8

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc-cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK-EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++++++++.+++. ...... .+.......++.+.+++.. ..     ..+.+++  
T Consensus        39 D~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~q~~-~~~~~~~~~~~~~~~~~la~~L~~~~-p~-----~~~~v~f--  108 (428)
T PRK07986         39 LADGRRLVDGMSSWWAAIHG-YNHPQLNAAMKSQID-AMSHVMFGGITHPPAIELCRKLVAMT-PQ-----PLECVFL--  108 (428)
T ss_pred             eCCCCEEEEcchhHHhhcCC-CCCHHHHHHHHHHHh-hcCCccccccCCHHHHHHHHHHHhhC-CC-----CcCEEEE--
Confidence            45678999999987655566 667788888888875 111111 1112222334445555443 11     1268999  


Q ss_pred             cCCcccHHHHHHHHHHhhc-----CCCeEEecCCCCCChHHHHhhc-Cc-------------eeeEEEeecCC-C--C-C
Q 015435          106 CLSGTGSLRVGAEFLARHY-----HQLTIYIPQPTWGNHPKVFTLA-GL-------------SVKTYRYYDPA-T--R-G  162 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~-----~gd~Vi~~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~~-~--~-~  162 (407)
                      ++||++|++.++++.+...     ...+|+....+|++........ |.             .+..+|..+.. .  + .
T Consensus       109 ~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  188 (428)
T PRK07986        109 ADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDE  188 (428)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHH
Confidence            9999999999998877651     2357898888888754322211 21             11222221000 0  0 1


Q ss_pred             cChhhHHHHHHcCCCC-cEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435          163 LNFQGLLEDLRAAPSG-AIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA  240 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~-~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~  240 (407)
                      -|++++++.+.+.+.. .++++-+-.+.-.|. .++++.+++|.++|++||+++|+||++.+++..+   ..+....+.-
T Consensus       189 ~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG---~~fa~~~~gv  265 (428)
T PRK07986        189 RDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTG---KLFACEHAGI  265 (428)
T ss_pred             HHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCC---CeeeecccCC
Confidence            2566777777643333 444442212444565 3567999999999999999999999998886554   2222221211


Q ss_pred             cCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHh-hhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435          241 DGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLK-LVIRPMYSSPPIHGASIVATILKDSTMYKEWTLEL  318 (407)
Q Consensus       241 ~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  318 (407)
                       ..+++   .++|.++ .| +.+|.+  +++ +++.+.+...-. .+....+++.+++++.++.+.|+...      +  
T Consensus       266 -~PDi~---t~gK~l~-gG~~p~~av--~~~-~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~------~--  329 (428)
T PRK07986        266 -APDIL---CLGKALT-GGTMTLSAT--LTT-REVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLE------S--  329 (428)
T ss_pred             -CCCEE---Eechhhh-CCcccCcch--hch-HHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHH------h--
Confidence             12233   4899997 67 588887  454 443333322000 01122344677888888877776321      1  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCCC---eEEecC-CCCC
Q 015435          319 KAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSDG---RISMAG-LSSK  390 (407)
Q Consensus       319 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~gg---Ris~~~-~~~e  390 (407)
                      +...++++++.+++.+.|+++.....+..+...|.+.. +.+    ....+...+.++|+.+.+.|   |+...- ++++
T Consensus       330 ~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~-ve~~~~~~~~~~~~~l~~~Gl~~~~~g~~i~~~Ppl~it~~  408 (428)
T PRK07986        330 GDWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGV-VETTRPVNMAALQRFFVEQGVWIRPFGKLIYLMPPYIILPE  408 (428)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEE-EEeCCcccHHHHHHHHHHCCcEEEecCCEEEEeCCCCCCHH
Confidence            13456677777777777776521001222222333332 222    23345555566899999877   664332 5889


Q ss_pred             ChhHHHHHHHHHHHh
Q 015435          391 TVPHLTDAIHAAVTR  405 (407)
Q Consensus       391 ~i~~~~~~l~~~l~~  405 (407)
                      ++++++++|.++++.
T Consensus       409 ei~~~~~~l~~~l~~  423 (428)
T PRK07986        409 QLQRLTAAVNRAVQD  423 (428)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999999864

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.82  E-value=1.7e-17  Score=158.70  Aligned_cols=348  Identities=12%  Similarity=0.042  Sum_probs=205.8

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc-CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE-YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ..+++.++|+..|....+.| ...+++++++.+++. ....... +.......++.+.+++.. ..     ..+.+++  
T Consensus        40 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~-~~~~~~~~~~~~~~~~~lae~L~~~~-p~-----~~~~v~f--  109 (429)
T PRK06173         40 LKDGRRLIDGMSSWWAALHG-YNHPRLNAAATNQLA-KMSHIMFGGFTHEPAVELAQKLLEIL-PP-----SLNKIFF--  109 (429)
T ss_pred             cCCCCEEEEccchHHhccCC-CCCHHHHHHHHHHHH-hcCCccccccCCHHHHHHHHHHHhhC-CC-----CcCEEEE--
Confidence            45679999999886655566 667788888888876 2111111 112233445566666544 11     1268999  


Q ss_pred             cCCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHHh-hcCc-------------eeeEEEeecCC-C---C
Q 015435          106 CLSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVFT-LAGL-------------SVKTYRYYDPA-T---R  161 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~~-~~G~-------------~~~~v~~~~~~-~---~  161 (407)
                      +++|++|++.++++.+...     +| .+|+....+|++...... ..|.             .+..+|..+.. .   .
T Consensus       110 ~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  189 (429)
T PRK06173        110 ADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWN  189 (429)
T ss_pred             eCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHH
Confidence            9999999999998877652     23 468888888887532211 1110             11222221000 0   0


Q ss_pred             CcChhhHHHHHHcCCCC-cEEEEecCC-CCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH
Q 015435          162 GLNFQGLLEDLRAAPSG-AIVLLHACA-HNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF  238 (407)
Q Consensus       162 ~~d~~~l~~~i~~~~~~-~~v~i~~~p-~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~  238 (407)
                      .-+++.+++.+.+.+.. .++++ -.. +.-.|.. ++++.++++.++|++||+++|+||++.+++..+   ..+....+
T Consensus       190 ~~~l~~l~~~i~~~~~~iAAvi~-EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG---~~~a~~~~  265 (429)
T PRK06173        190 DEAIEPLQDLLEQKGDEIAALIL-EPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTG---KLFALEHA  265 (429)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEEE-cchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCC---cchHHHhc
Confidence            01356677777643333 44444 331 4555665 789999999999999999999999998876554   23333322


Q ss_pred             HHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHh-hhhhcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435          239 VADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLK-LVIRPMYSSPPIHGASIVATILKDSTMYKEWTL  316 (407)
Q Consensus       239 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  316 (407)
                      .- ..+++   .++|.++ .| +.+|.+  +.+ +++.+.+..... .+....+...+++++.++.+.|+-..      +
T Consensus       266 gv-~PDiv---~~gK~l~-gG~~p~~a~--~~~-~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~------~  331 (429)
T PRK06173        266 GV-VPDIM---CIGKALT-GGYLTLSAT--ITT-EAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLL------E  331 (429)
T ss_pred             CC-CCCEE---Eeehhhh-CCccccceE--Eec-HHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHH------h
Confidence            11 22233   3899997 67 478887  454 443333221000 01122234567788888877775321      1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEec-C--CCHHHHHHhHhhccEEEcCCC---eEEecC-CC
Q 015435          317 ELKAMADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFT-G--LNSEQVAFMTKEYHIYMTSDG---RISMAG-LS  388 (407)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~gi~~~~gg---Ris~~~-~~  388 (407)
                        +..+++++++.++|.+.|++. +.+ .+.-+...|.+..+. +  .....+...|.++||.+.+.|   ||...- ++
T Consensus       332 --~~~~~~~~~~g~~l~~~L~~~~~~~-~v~~vRg~Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~~g~~l~~~Ppl~it  408 (429)
T PRK06173        332 --SPWQQNIQRIEAQLKQELAPAAEFD-SVAEVRVLGAIGVVEMKEPVNMATLQPRFVEHGIWVRPFGKLVYIMPPFIIS  408 (429)
T ss_pred             --CCHHHHHHHHHHHHHHHHHHhhcCC-CeeeeeccceEEEEEeCCcccHHHHHHHHHHCCeEEEecCCEEEEeCCccCC
Confidence              134667777888888888764 211 011122234333221 2  123455556666899999877   776543 58


Q ss_pred             CCChhHHHHHHHHHHHh
Q 015435          389 SKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~~  405 (407)
                      ++++++++++|.+++++
T Consensus       409 ~~ei~~~~~~l~~~l~~  425 (429)
T PRK06173        409 PDELSQLTSGLLRVLKQ  425 (429)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            89999999999999875

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.81  E-value=5.5e-18  Score=155.48  Aligned_cols=336  Identities=16%  Similarity=0.131  Sum_probs=211.3

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCC-CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLP-IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      .+.++||+-.|.-..=.| ..++.+++++.+++.  .  ...|.. +...-++.+.+++.+..       -+.|-+  ++
T Consensus        51 DGn~YIDy~~~~Gp~ilG-H~~p~V~~Av~~~l~--~--G~~fg~Pte~Ei~~Aell~~~~p~-------~e~vrf--vn  116 (432)
T COG0001          51 DGNEYIDYVLGWGPLILG-HAHPAVVEAVQEQLE--R--GLSFGAPTELEVELAELLIERVPS-------IEKVRF--VN  116 (432)
T ss_pred             CCCEeeehhccCcccccC-CCCHHHHHHHHHHHH--h--cCCCCCCCHHHHHHHHHHHHhcCc-------ccEEEE--ec
Confidence            467899988775322234 446677777777776  2  233543 33344555555555522       288999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCce-------------------eeEEEeecCCCCCcChhh
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLS-------------------VKTYRYYDPATRGLNFQG  167 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~-------------------~~~v~~~~~~~~~~d~~~  167 (407)
                      +||+|.-.++++.+.....|+|+..+-+|+++.+.+. .+|..                   ++.+|.       -|++.
T Consensus       117 SGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~y-------ND~~a  189 (432)
T COG0001         117 SGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY-------NDLEA  189 (432)
T ss_pred             chhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecC-------CCHHH
Confidence            9999999999998888888999999999999988665 33311                   122222       28999


Q ss_pred             HHHHHHcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          168 LLEDLRAA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       168 l~~~i~~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      +++++++. .+..+|++-+.+.|-.=+...++.++.|.++|++||++||.||+..+|...-  ...+..  +.-..|   
T Consensus       190 l~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~--gGaq~~--~gi~PD---  262 (432)
T COG0001         190 LEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVAL--GGAQGY--YGVEPD---  262 (432)
T ss_pred             HHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCC--cccccc--cCcCcc---
Confidence            99999865 3456677766666643335668899999999999999999999988776531  011111  111111   


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                       +.+++|.+| .|+++|.+   ....++.+.+... ...-+..+.+.+++++.+....++...-.+   ...+.+.+.-.
T Consensus       263 -lttlGKiIG-GGlP~ga~---gGr~eiM~~~~p~-g~vyqaGT~sgnplamaAG~atl~~l~~~~---~~y~~l~~~~~  333 (432)
T COG0001         263 -LTTLGKIIG-GGLPIGAF---GGRAEIMEQLAPL-GPVYQAGTLSGNPLAMAAGLATLEELMTEE---GVYERLDALGE  333 (432)
T ss_pred             -hhhhhhhhc-CCcceeee---ccHHHHHhhhCCC-CCccccCCCCCcHHHHHHHHHHHHHHHhcc---cHHHHHHHHHH
Confidence             345899999 89999998   5545544432221 122234555777777777776665331000   01222333333


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCceeEEec--C--C---------CHH----HHHHhHhhccEEEcCCC----eEEec
Q 015435          327 SMRQQLFDALSARGTPGDWSHIIKQIGMFTFT--G--L---------NSE----QVAFMTKEYHIYMTSDG----RISMA  385 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~--~---------~~~----~~~~~l~~~gi~~~~gg----Ris~~  385 (407)
                      +.++-+.+.+.+.+.+  +.+ ...+++|.+.  .  .         +.+    +.. .+.++||.+.|+.    -+|..
T Consensus       334 ~L~~gl~~~~~~~g~~--~~v-~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~-~~l~~GV~l~ps~~ea~flS~a  409 (432)
T COG0001         334 RLAEGLRAAAERHGIP--LTV-NRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFH-HLLNRGVYLAPSQFEAGFLSTA  409 (432)
T ss_pred             HHHHHHHHHHHHhCCC--eEE-eeecceEEEEecCCCCCCHHHHHhhchHHHHHHHH-HHHhCCcccCCccccceeeecc
Confidence            3444444444455633  222 2234444432  2  1         222    234 4444899999985    56777


Q ss_pred             CCCCCChhHHHHHHHHHHHhh
Q 015435          386 GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       386 ~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      + ++++|++.++++.++++++
T Consensus       410 h-te~di~~~~~a~~~~~~~~  429 (432)
T COG0001         410 H-TEEDIDRTLEAADEAFKEL  429 (432)
T ss_pred             c-CHHHHHHHHHHHHHHHHHh
Confidence            5 9999999999999998765

>PRK07482 hypothetical protein; Provisional

Probab=99.81  E-value=1.6e-17  Score=160.49  Aligned_cols=344  Identities=13%  Similarity=0.041  Sum_probs=204.5

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++++||+..|....+.| ..++++++++.+++. .....+.+  .+.....++.+.+++...+      ..+.+++ 
T Consensus        46 D~dG~~ylD~~sg~~~~~lG-h~~p~v~~Av~~q~~-~~~~~~~~~~~~~~~~~~lAe~L~~~~p~------~~~~v~f-  116 (461)
T PRK07482         46 DAQGRRYIDAFAGLYCVNVG-YGRTEVAEAIAEQAK-ELAYYHTYVGHGTEASITLSKRIIDRAPA------GMSKVYY-  116 (461)
T ss_pred             ECCCCEEEEcccchhhhcCC-CCCHHHHHHHHHHHH-hcCccccccccCCHHHHHHHHHHHHhCCC------CcCEEEE-
Confidence            45679999999998766777 667788888888886 21111111  1222234455555554411      1268999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----C-CCeEEecCCCCCChHHHHhhc-C------------ceeeEEEeecCCCC---C
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----H-QLTIYIPQPTWGNHPKVFTLA-G------------LSVKTYRYYDPATR---G  162 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~-gd~Vi~~~p~y~~~~~~~~~~-G------------~~~~~v~~~~~~~~---~  162 (407)
                       ++||++|++.++++.+...     + ..+|+...-+|++........ |            ..+..++.......   +
T Consensus       117 -~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  195 (461)
T PRK07482        117 -GLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAG  195 (461)
T ss_pred             -eCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccC
Confidence             9999999999998886542     2 246888888888764322211 1            11222222100000   0


Q ss_pred             --------cChhhHHHHHHc-C-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          163 --------LNFQGLLEDLRA-A-PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       163 --------~d~~~l~~~i~~-~-~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                              .+++.+++.+.. . .+..++++-+ .+...|.+ .+++.+++|.++|++||+++|+||+..+|+..+   .
T Consensus       196 ~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EP-vqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG---~  271 (461)
T PRK07482        196 MSEEQFSAYCADELEELILAEGPDTIAAFIAEP-VLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLG---S  271 (461)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc---c
Confidence                    135677777742 2 2345555533 34444666 678899999999999999999999999998764   2


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhh-------hhhcccCCCChhHHHHHHH
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKL-------VIRPMYSSPPIHGASIVAT  303 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  303 (407)
                      .+....+. -..++++   ++|.++ .|. ++|.+  ++. ++    +.+.+..       +....+++.+++++.++.+
T Consensus       272 ~~a~~~~g-v~PDiv~---~gKgl~-gG~~Pi~av--~~~-~~----i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a  339 (461)
T PRK07482        272 MFGSDHYG-IEPDLIT---VAKGLT-SAYAPLSGS--IVG-EK----VWDVLEQGSDEHGAIGHGWTYSGHPICAAAALA  339 (461)
T ss_pred             hhhHHhcC-CCCCEEE---Eccccc-cCcccccee--eec-HH----HHHHHhcccccCCccccCCCCCcCHHHHHHHHH
Confidence            33333332 1233443   689998 574 88888  455 33    4333321       1122455788888888888


Q ss_pred             HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcccccCCceeEEecCC----------C-----HHHHHH
Q 015435          304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG-DWSHIIKQIGMFTFTGL----------N-----SEQVAF  367 (407)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~----------~-----~~~~~~  367 (407)
                      .|+...        -+...++.+++.+++.+.|+++-... .+..+...|.++. +.+          +     ...+..
T Consensus       340 ~L~~~~--------~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~g-iel~~~~~~~~~~~~~~~~~~~i~~  410 (461)
T PRK07482        340 NLDILE--------RENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAA-VEFVADRDDRTPFDPALKIGPQVSA  410 (461)
T ss_pred             HHHHHH--------hCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEE-EEeccCCCcCCCCChhhHHHHHHHH
Confidence            876321        12344556667777777776541100 0122233343332 211          1     123344


Q ss_pred             hHhhccEEEcCC--C---eEEec-CCCCCChhHHHHHHHHHHHh
Q 015435          368 MTKEYHIYMTSD--G---RISMA-GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       368 ~l~~~gi~~~~g--g---Ris~~-~~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+.++|+.+.+.  |   |+..+ .++++|++++++++.+++++
T Consensus       411 ~~~~~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  454 (461)
T PRK07482        411 AALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDE  454 (461)
T ss_pred             HHHHCCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            455689988643  4   66533 25889999999999998865

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.81  E-value=2.3e-17  Score=158.43  Aligned_cols=340  Identities=13%  Similarity=0.081  Sum_probs=205.0

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++++||+..|....+.| ...+.+++++.+++.  ......+ +.....++.+++++.. .  +    .+.+.+  +
T Consensus        49 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~--~~~~~~~-~~~~~~~la~~l~~~~-p--~----~~~v~f--~  115 (428)
T PRK12389         49 DVDGNKYIDYLAAYGPIITG-HAHPHITKAITEAAE--NGVLYGT-PTELEIEFAKMLKEAI-P--S----LEKVRF--V  115 (428)
T ss_pred             eCCCCEEEEccccccccccC-CCCHHHHHHHHHHHH--hCCccCC-CCHHHHHHHHHHHHhC-C--C----CcEEEE--e
Confidence            35678999999887655666 667788888888886  2222222 3333445555555544 1  1    268999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-Cceee--------EEEee-cCCC---CCcChhhHHHHHH
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-GLSVK--------TYRYY-DPAT---RGLNFQGLLEDLR  173 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G~~~~--------~v~~~-~~~~---~~~d~~~l~~~i~  173 (407)
                      ++|++|++.++++.+......+|+...-+|++........ |....        .++.. .+..   .-.|++.+++.+.
T Consensus       116 ~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  195 (428)
T PRK12389        116 NSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALD  195 (428)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHH
Confidence            9999999999988877755568888888888875543322 21110        00000 0000   0126788888886


Q ss_pred             cCCC-CcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          174 AAPS-GAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       174 ~~~~-~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                      +... ..++++ -....-.|.+ .+.+.+++|.++|++||+++|+||+..+| ..+.   ......+.- ..++   -++
T Consensus       196 ~~~~~vaavi~-EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~---~~a~~~~gv-~PDi---vt~  266 (428)
T PRK12389        196 KWGDEVAAVLV-EPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMY---GGAQDLLGV-EPDL---TAL  266 (428)
T ss_pred             hcCCcEEEEEE-eCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCc---chhhHHhCC-CCCe---eee
Confidence            4333 344555 3334445665 57889999999999999999999999888 3321   111111211 2222   358


Q ss_pred             CccccccCCCcceeEEeecChhhHHHHHHHHhh---hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435          252 AKNMGLYGERVGALSIVCKTEDVASRVESQLKL---VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       252 sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  328 (407)
                      +|.++ .|+++|.+  +++ ++    +.+.+..   .....+++.+++++.++.+.|+...      +  +...++++++
T Consensus       267 gK~lg-gG~Pi~av--~~~-~~----i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~------~--~~l~~~~~~~  330 (428)
T PRK12389        267 GKIIG-GGLPIGAY--GGR-KD----IMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQ------Q--EGVYEKLDRL  330 (428)
T ss_pred             chhhc-CCCceeEE--eEH-HH----HHhhhccCCCcccccCCccCHHHHHHHHHHHHHHh------c--ccHHHHHHHH
Confidence            99998 68999998  454 44    4443321   1122345678888888887776321      1  1344566667


Q ss_pred             HHHHHHHHHhcC--CCCCcccccCCceeEEe--c-C-C---------C---HHHHHHhHhhccEEEcCCC----eEEecC
Q 015435          329 RQQLFDALSARG--TPGDWSHIIKQIGMFTF--T-G-L---------N---SEQVAFMTKEYHIYMTSDG----RISMAG  386 (407)
Q Consensus       329 ~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~--~-~-~---------~---~~~~~~~l~~~gi~~~~gg----Ris~~~  386 (407)
                      .+++.+.|+++-  .+....+... +|++..  . . .         +   ...+...+.++||.+.+.+    .+++. 
T Consensus       331 g~~l~~~L~~l~~~~~~~~~v~r~-~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~l~-  408 (428)
T PRK12389        331 GAMLEEGILEAAEKHGITITINRL-KGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEAWFLTTA-  408 (428)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEec-CcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCCCeeecCC-
Confidence            777777776531  1100122122 223321  1 1 0         1   1234445556899998865    34444 


Q ss_pred             CCCCChhHHHHHHHHHHHhh
Q 015435          387 LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++++|+++++++++++++++
T Consensus       409 ~t~e~id~~~~~l~~~l~~~  428 (428)
T PRK12389        409 HTEEDIEETLEAVDRAFAQL  428 (428)
T ss_pred             CCHHHHHHHHHHHHHHHHhC
Confidence            48899999999999998753

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.81  E-value=9.1e-18  Score=159.04  Aligned_cols=217  Identities=12%  Similarity=0.067  Sum_probs=145.9

Q ss_pred             CceEEeecCCcc-cHHHHHHHHHHhhc-CCCeEEecCCCCCChHHHHhhcCceeeEEEe-ecCCCCCcChhhHHHHHHcC
Q 015435           99 NRVTTVQCLSGT-GSLRVGAEFLARHY-HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRY-YDPATRGLNFQGLLEDLRAA  175 (407)
Q Consensus        99 ~~i~~~~t~g~t-~a~~~~~~~~~~~~-~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~i~~~  175 (407)
                      +..++  ++|+| .++.+++..+.... +||.|+++..+|.....++..+|++++.++. .+++++.+|++++++++++.
T Consensus       124 ~~a~~--v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~  201 (444)
T TIGR03531       124 KSAFV--VPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEI  201 (444)
T ss_pred             CEEEE--ECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhc
Confidence            36777  99999 57766632221111 5899999999999999999999999999995 24667899999999999832


Q ss_pred             CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHH-HHHHcCCcEEEEEecCcc
Q 015435          176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR-MFVADGGECLVAQSYAKN  254 (407)
Q Consensus       176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~  254 (407)
                      .....++++.+|+  |+...+.+++++|+++|++||+++|+|++|......     ..... .-...+.-.+++.|++|.
T Consensus       202 ~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~-----~~~~~~~g~~~Grad~vv~s~hK~  274 (444)
T TIGR03531       202 GPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNK-----YMELINKAIKVGRVDAVVSSTDKN  274 (444)
T ss_pred             cCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChh-----hhhhhhccccccCCCeEEEeCccC
Confidence            2123333434444  555566899999999999999999999999743210     00110 000111235778899999


Q ss_pred             ccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          255 MGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       255 ~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                      +.++|+  |+++ +++|+++.+.+..    ...  ....+...+.+...++..+.      +.++++.++..++++++.+
T Consensus       275 l~~pg~--Gg~I-~~~d~el~~~i~~----~y~--g~~~~s~~~~~~~~ll~~G~------~g~~~li~~~~~~a~~l~~  339 (444)
T TIGR03531       275 FMVPVG--GAII-YSFDENFIQEISK----SYP--GRASASPSLDVLITLLSLGS------KGYLELLKERKEMYKYLKE  339 (444)
T ss_pred             CCCCCC--EEEE-EECCHHHHHHHHH----hcc--CCCCChHHHHHHHHHHHhCH------HHHHHHHHHHHHHHHHHHH
Confidence            998876  5552 4767776655433    111  11233445665555555432      5577777888888888888


Q ss_pred             HHHhc
Q 015435          335 ALSAR  339 (407)
Q Consensus       335 ~l~~~  339 (407)
                      .|+++
T Consensus       340 ~L~~l  344 (444)
T TIGR03531       340 LLQKL  344 (444)
T ss_pred             HHHHH
Confidence            88875

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.81  E-value=3.4e-17  Score=159.21  Aligned_cols=351  Identities=13%  Similarity=0.078  Sum_probs=203.8

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ..+++++|||..|....+.| ..++++++++.+++. .....+.+  .+.....++.+.+++.+...     +.+.+++ 
T Consensus        85 D~dG~~ylD~~sg~~~~~lG-h~hp~v~~Av~~ql~-~~~~~~~~~~~~~~~~~~lae~L~~~~~~~-----~~~~v~f-  156 (504)
T PLN02760         85 DINGKKYLDALAGLWCTALG-GSEPRLVAAATEQLN-KLPFYHSFWNRTTKPSLDLAKELLEMFTAR-----KMGKVFF-  156 (504)
T ss_pred             ECCCCEEEEcCcCHHhcccC-CCCHHHHHHHHHHHh-hccceecccccCcHHHHHHHHHHHhhcCCC-----CCCEEEE-
Confidence            34678999999987656677 667888888888886 11111111  11222334444444443111     1257899 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHH-hhcCce------------eeEEEeecCCCCC---
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVF-TLAGLS------------VKTYRYYDPATRG---  162 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~-~~~G~~------------~~~v~~~~~~~~~---  162 (407)
                       +++|++|++.++++.+...     ++ .+|+..+-+|++..... ...|..            +..++..+.....   
T Consensus       157 -~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  235 (504)
T PLN02760        157 -TNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPG  235 (504)
T ss_pred             -eCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCC
Confidence             9999999999988876432     22 57888888887764322 222211            1122211000000   


Q ss_pred             --------cChhhHHHHHHc-CCC-CcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          163 --------LNFQGLLEDLRA-APS-GAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       163 --------~d~~~l~~~i~~-~~~-~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                              ...+++++.+.+ .+. ..++++ -....-.|.+ .+++.+++|.++|++||+++|+||++.+|+..+   .
T Consensus       236 ~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~-EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG---~  311 (504)
T PLN02760        236 ETEEEFSTRLADNLENLILKEGPETIAAFIA-EPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLG---T  311 (504)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCCCceEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccc---h
Confidence                    012446666642 223 334444 3334344654 678999999999999999999999999997765   2


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHh---hhhhcccCCCChhHHHHHHHHhcC
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLK---LVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                      .+....+.-..|    +.+++|.+| .| +++|.+  +++ +++.+.+.....   .+....+++.+++++.++.+.|+.
T Consensus       312 ~~a~e~~gv~PD----ivtlgK~lg-gG~~PigAv--~~~-~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~  383 (504)
T PLN02760        312 MFGCDKYNIKPD----LVSLAKALS-SAYMPIGAV--LVS-PEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKI  383 (504)
T ss_pred             hhHHHhcCCCCc----EEEeccccc-CCccccceE--eec-HHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHH
Confidence            333333222122    345899998 45 589998  455 444433321100   112234557788888888888763


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec--C-CC-----------HHHHHHhHhhcc
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT--G-LN-----------SEQVAFMTKEYH  373 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~-~~-----------~~~~~~~l~~~g  373 (407)
                      ..      +  +...++.+++.++|.+.|+++.....+..+...|.++.+-  . -.           ...+...+.++|
T Consensus       384 i~------~--~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~G  455 (504)
T PLN02760        384 YK------E--RNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRG  455 (504)
T ss_pred             HH------h--CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCC
Confidence            31      1  2455667777777777776652100011223334443321  1 00           122334455689


Q ss_pred             EEEcCCC---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          374 IYMTSDG---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       374 i~~~~gg---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |.+.+.|   ||+..- ++++|++++++++.++++++
T Consensus       456 vl~~~~g~~lrl~Ppl~it~eeid~~~~~l~~al~~~  492 (504)
T PLN02760        456 MLVRVAGDNIMMSPPLIITPEEVDELISIYGKALKAT  492 (504)
T ss_pred             cEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9998876   676442 48899999999999988653

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.81  E-value=2.4e-17  Score=158.77  Aligned_cols=351  Identities=9%  Similarity=0.030  Sum_probs=206.8

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc-CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE-YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++++++++.+++. ....... ..+.....++.+.+++.. +.     ..+.+++  
T Consensus        50 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~-~~~~~~~~~~~~~~~~~lAe~L~~~~-p~-----~~~~v~f--  119 (453)
T PRK06943         50 DRDGRRYLDAISSWWVNLFG-HANPRINAALKDQLD-TLEHAMLAGCTHEPAIELAERLAALT-GG-----TLGHAFF--  119 (453)
T ss_pred             eCCCCEEEEcchHHHHhcCC-CCCHHHHHHHHHHHH-hcCCccccccCCHHHHHHHHHHHHhC-CC-----CCCEEEE--
Confidence            45678999999996655667 667788888888876 1111111 112222334555555543 11     1157999  


Q ss_pred             cCCcccHHHHHHHHHHhhc-----C-CCeEEecCCCCCChHHHHhh-cCc------------eeeEEEeecCCCC--C--
Q 015435          106 CLSGTGSLRVGAEFLARHY-----H-QLTIYIPQPTWGNHPKVFTL-AGL------------SVKTYRYYDPATR--G--  162 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~-----~-gd~Vi~~~p~y~~~~~~~~~-~G~------------~~~~v~~~~~~~~--~--  162 (407)
                      +++|++|++.++++.....     + ..+|+...-+|++....... .|-            .+..++..+....  .  
T Consensus       120 ~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  199 (453)
T PRK06943        120 ASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGET  199 (453)
T ss_pred             eCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCC
Confidence            9999999999988875431     2 35788888888876532221 110            1222332111000  0  


Q ss_pred             ------cChhhHHHHHHcCCC-CcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435          163 ------LNFQGLLEDLRAAPS-GAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS  234 (407)
Q Consensus       163 ------~d~~~l~~~i~~~~~-~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~  234 (407)
                            -+++++++.+...+. ..++++-+-.+...|. ..+++.++++.++|++||+++|+||+..+|+..+   ..+.
T Consensus       200 ~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG---~~fa  276 (453)
T PRK06943        200 AADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTG---TFFA  276 (453)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCc---chhH
Confidence                  124667777754333 3455553212455566 4789999999999999999999999999998764   3444


Q ss_pred             HHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHH--hhhhhcccCCCChhHHHHHHHHhcChhhH
Q 015435          235 VRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQL--KLVIRPMYSSPPIHGASIVATILKDSTMY  311 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  311 (407)
                      ...+.- ..++++   ++|.++ .| +++|.+  +++ +++.+.+...-  ..+....+++.+++++.++.+.|+-..  
T Consensus       277 ~~~~gv-~PDivt---~gKgl~-gG~~Pi~av--~~~-~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~--  346 (453)
T PRK06943        277 CEQAGV-WPDFLC---LSKGIS-GGYLPLSLV--LSR-DAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFA--  346 (453)
T ss_pred             HHhCCC-CCCeEe---eehhhc-cCcccceEE--EEc-HHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHH--
Confidence            433322 233443   589998 68 599998  455 34333322100  011122345678888888888776321  


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEe--c-CCC-----HHHHHHhHhhccEEEcCCC---
Q 015435          312 KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTF--T-GLN-----SEQVAFMTKEYHIYMTSDG---  380 (407)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~-~~~-----~~~~~~~l~~~gi~~~~gg---  380 (407)
                          +  +.+.++.+++.+++.+.|+++.....+..+...|.++.+  . +-+     ...+...+.++|+.+.+.|   
T Consensus       347 ----~--~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~l  420 (453)
T PRK06943        347 ----E--DDVLARNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPIGTTV  420 (453)
T ss_pred             ----h--cCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEecCCEE
Confidence                1  234456666777777777665211112223334443332  1 111     1224444556899998866   


Q ss_pred             eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ||+..- ++++++++++++|.++++++
T Consensus       421 ~~~Ppl~it~~eid~~~~~l~~al~~~  447 (453)
T PRK06943        421 YLMPPYVLDDDEIAWLAERTRATLDAT  447 (453)
T ss_pred             EEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence            776332 58899999999999998753

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.81  E-value=2.7e-17  Score=157.23  Aligned_cols=347  Identities=12%  Similarity=0.071  Sum_probs=202.6

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc-CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE-YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ...+++++++.+++. ....... +.......++.+.+++.. ..     ..+.+++  
T Consensus        36 D~dG~~ylD~~~g~~~~~lG-h~~p~i~~ai~~q~~-~~~~~~~~~~~~~~~~~lae~L~~~~-p~-----~~~~v~f--  105 (422)
T PRK05630         36 LEDGSTVIDAMSSWWSAAHG-HGHPRLKAAAHKQID-TMSHVMFGGLTHEPAIKLTRKLLNLT-DN-----GLDHVFY--  105 (422)
T ss_pred             ECCCCEEEEcchhHHHhcCC-CCCHHHHHHHHHHHH-hCCCcccCCcCCHHHHHHHHHHHhhC-CC-----CcCEEEE--
Confidence            45679999999987655667 667788888888886 2111111 112222345555665544 11     1268999  


Q ss_pred             cCCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHHhhc-Cc-------------eeeEEEeecCCCCCcCh
Q 015435          106 CLSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVFTLA-GL-------------SVKTYRYYDPATRGLNF  165 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~~~~~~d~  165 (407)
                      +++|++|++.++++.....     ++ .+|+...-+|++........ +.             .+..+|..  .....+.
T Consensus       106 ~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~  183 (422)
T PRK05630        106 SDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAP--PVRGSSP  183 (422)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCC--cccCCCh
Confidence            9999999999998877653     23 46888888888754433211 11             12223321  1111121


Q ss_pred             -------hhHHHHHHcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435          166 -------QGLLEDLRAAPSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM  237 (407)
Q Consensus       166 -------~~l~~~i~~~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~  237 (407)
                             +.+++.+.  .+..++++-+-.+...|.. .+.+.+++|.++|++||+++|+||++.+++..+   ..+....
T Consensus       184 ~~~~~~~~~~~~~~~--~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG---~~~a~~~  258 (422)
T PRK05630        184 QEISEYLRSLELLID--ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTG---ELFATLA  258 (422)
T ss_pred             HHHHHHHHHHHHHHh--hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCc---hhhHHHh
Confidence                   23344443  3455555532125556664 678899999999999999999999998887653   2333322


Q ss_pred             HHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHH--hhhhhcccCCCChhHHHHHHHHhcChhhHHhH
Q 015435          238 FVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQL--KLVIRPMYSSPPIHGASIVATILKDSTMYKEW  314 (407)
Q Consensus       238 ~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  314 (407)
                      +.- ..+++   +++|.++ .| ..+|++  +++ +++.+.+...-  ..+....+++.+++++.++.+.++...     
T Consensus       259 ~gv-~PDi~---t~gK~l~-gG~~p~~av--~~~-~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~-----  325 (422)
T PRK05630        259 AGV-TPDIM---CVGKALT-GGFMSFAAT--LCT-DKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIE-----  325 (422)
T ss_pred             cCC-CCCee---eeechhh-cCcccccee--ecc-HHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHH-----
Confidence            211 12233   5799886 56 478888  455 44333322100  001112345677888888777765321     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec---CCCHHHHHHhHhhccEEEcCCC---eEEecC-C
Q 015435          315 TLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT---GLNSEQVAFMTKEYHIYMTSDG---RISMAG-L  387 (407)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~gg---Ris~~~-~  387 (407)
                       +  +..+++++++.+++.+.|+.+.....+..+...|.++...   ..+...+...+.++|+.+.+.|   ||...- +
T Consensus       326 -~--~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~~~~~~~~~~~~~Gl~~~~~g~~l~~~PpL~i  402 (422)
T PRK05630        326 -T--GMWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPVDMEEATQAAVDHGVWLRPFGRLVYVMPPYIT  402 (422)
T ss_pred             -h--CcHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECCcccHHHHHHHHHHCCeEEEecCCEEEEECCccC
Confidence             1  1334566666677777666542100122222334333221   1123445555666899998876   665432 5


Q ss_pred             CCCChhHHHHHHHHHHHhh
Q 015435          388 SSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       388 ~~e~i~~~~~~l~~~l~~~  406 (407)
                      +++++++++++|+++++..
T Consensus       403 t~~~i~~~~~~l~~al~~~  421 (422)
T PRK05630        403 TSEQIAQICAALAAAVKAK  421 (422)
T ss_pred             CHHHHHHHHHHHHHHHhcc
Confidence            8899999999999999764

>PRK05965 hypothetical protein; Provisional

Probab=99.81  E-value=3.4e-17  Score=158.21  Aligned_cols=350  Identities=12%  Similarity=0.069  Sum_probs=207.9

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++++||+..|....+.| ..++++++++.+++. .......+  .......++.+++++.. ..     ..+.+++ 
T Consensus        42 D~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~q~~-~~~~~~~~~~~~~~~~~~lae~L~~~~-p~-----~~~~v~f-  112 (459)
T PRK05965         42 DASGHQLLDAFAGLWCVNVG-YGQESIVEAAAEQMR-ELPYATGYFHFGSEPAIRLAAKLAERA-PG-----SLNHVYF-  112 (459)
T ss_pred             ECCCCEEEECcccHHhccCC-CCCHHHHHHHHHHHH-hcCCcccccccCCHHHHHHHHHHHhhC-CC-----CcCEEEE-
Confidence            45678999999987766677 667788888888886 21111111  11222335555565544 11     1268999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----C-CCeEEecCCCCCChHHHHh-hc---------Cc---eeeEEEeecCCC--CCc
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----H-QLTIYIPQPTWGNHPKVFT-LA---------GL---SVKTYRYYDPAT--RGL  163 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~-gd~Vi~~~p~y~~~~~~~~-~~---------G~---~~~~v~~~~~~~--~~~  163 (407)
                       ++||++|++.++++.+...     + ..+|+....+|++...... ..         |.   .+..++......  ...
T Consensus       113 -~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (459)
T PRK05965        113 -TLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGD  191 (459)
T ss_pred             -eCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCC
Confidence             9999999999998877652     2 2468888888887753221 11         10   112232211110  111


Q ss_pred             C--------hhhHHHHHHcC--CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          164 N--------FQGLLEDLRAA--PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       164 d--------~~~l~~~i~~~--~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      |        ++.+++.+.+.  .+..++++-+ .+...|++ .+++.++++.++|++||+++|+||+..+|+..+   ..
T Consensus       192 ~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEP-iqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG---~~  267 (459)
T PRK05965        192 DPQAIIAASVAALRAKVAELGADNVAAFFCEP-IQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTG---PL  267 (459)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCceEEEEEec-cccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCc---hh
Confidence            2        25677777532  2345555533 44445664 788999999999999999999999999998765   33


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHh---hhhhcccCCCChhHHHHHHHHhcCh
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLK---LVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                      +....+.- ..++++   ++|.++ .| +++|.+  +++ +++.+.+.....   .+....+++.+++++.++.+.|+-.
T Consensus       268 ~a~~~~gv-~PDiv~---~gKgl~-gG~~Pi~av--~~~-~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l  339 (459)
T PRK05965        268 FACEAEGV-VPDLMT---VAKGLT-SGYVPMGAV--LMS-DHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLY  339 (459)
T ss_pred             hhHhhcCC-CCCeEE---echhhc-cCCcceeEE--EEc-HHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHH
Confidence            44333322 233343   689998 68 599998  455 444333321100   1122345577888888888777532


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEe--c-CC------C-----HHHHHHhHhhccE
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTF--T-GL------N-----SEQVAFMTKEYHI  374 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~-~~------~-----~~~~~~~l~~~gi  374 (407)
                      +        -+.+.++.+++.++|.+.|+++.....+.-+...|.++.+  . +-      +     ...+...+.++|+
T Consensus       340 ~--------~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gl  411 (459)
T PRK05965        340 H--------EGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGL  411 (459)
T ss_pred             H--------hccHHHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCe
Confidence            1        1234456667777777777765310012222333433322  1 10      1     1223444556899


Q ss_pred             EEcCCC----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          375 YMTSDG----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       375 ~~~~gg----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+.+.|    |++..- +++++++++++++.++++++
T Consensus       412 l~~~~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~  448 (459)
T PRK05965        412 VFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLDDV  448 (459)
T ss_pred             EEEecCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            998865    454321 48899999999999998753

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.80  E-value=2.6e-17  Score=158.81  Aligned_cols=344  Identities=10%  Similarity=0.116  Sum_probs=202.2

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++++||+. |....+.| ..++.+++++.+++. .......+.+.....++.+.+++.. ..     ..+.+++  ++
T Consensus        69 ~dG~~ylD~~-g~~~~~lG-h~~p~v~~Ai~~ql~-~~~~~~~~~~~~~~~~lae~L~~~~-p~-----~~~~v~f--~~  137 (459)
T PRK06082         69 VDGKKYMDFH-GNNVHQLG-YGHPHVIEKVKEQMA-KLPFSPRRFTNETAIECAEKLTEIA-GG-----ELNRVLF--AP  137 (459)
T ss_pred             CCCCEEEEcc-cHhhcccC-CCCHHHHHHHHHHHH-hCCCccCccCCHHHHHHHHHHHHhC-CC-----CCCEEEE--CC
Confidence            4578999987 43333456 567788888888875 1111111112333445566666554 21     1268999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH-HHhhcCc------------eeeEEEeecCCC--C-Cc------Ch
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK-VFTLAGL------------SVKTYRYYDPAT--R-GL------NF  165 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~-~~~~~G~------------~~~~v~~~~~~~--~-~~------d~  165 (407)
                      ||++|++.+.++.+......+|+...-+|++... .+...|.            .+..+|..+...  + ..      .+
T Consensus       138 sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (459)
T PRK06082        138 GGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYA  217 (459)
T ss_pred             CcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHH
Confidence            9999999999888766555788888888877643 2222221            122222110000  0 00      13


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +.+++.+.+..+..++++-+ .++..+...+++.+++|.++|++||+++|+||+..+|+..+   ..+....+.- ..++
T Consensus       218 ~~l~~~i~~~~~vAavIvEP-v~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG---~~fa~e~~gv-~PDi  292 (459)
T PRK06082        218 DYLEYVIEKEGGIGAFIAEA-VRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTG---EWFTHQAYGI-EPDI  292 (459)
T ss_pred             HHHHHHHhcCCCEEEEEECC-ccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhhHhHhhCC-CCCE
Confidence            45677775433445555533 34434556888999999999999999999999999887654   2333333322 2233


Q ss_pred             EEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       246 i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      ++   ++|.++ .| +++|.+  +.. +    .+...........+.+.+++++.++.+.|+...      +  +...++
T Consensus       293 v~---~gKgl~-gG~~P~~av--~~~-~----~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~------~--~~l~~~  353 (459)
T PRK06082        293 LC---IGKGLG-GGLVPIAAM--ITK-D----KYNTAAQISLGHYTHEKSPLGCAAALATIEVIE------Q--EGLLEK  353 (459)
T ss_pred             EE---eccccc-CCCCcceEE--EEc-H----HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH------h--cCHHHH
Confidence            33   899998 56 589998  455 3    333222111112355778888888887776321      1  245567


Q ss_pred             HHHHHHHHHHHHHhcCCCC-CcccccCCceeEEec---CC-----C---HHHHHHhHhhccEEEcCC-C---eEEecC-C
Q 015435          325 IISMRQQLFDALSARGTPG-DWSHIIKQIGMFTFT---GL-----N---SEQVAFMTKEYHIYMTSD-G---RISMAG-L  387 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~---~~-----~---~~~~~~~l~~~gi~~~~g-g---Ris~~~-~  387 (407)
                      .+++.++|.+.|+++-... .+..+...|.++.+-   +.     +   ...+...+.++|+.+.+. +   |++..- +
T Consensus       354 ~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~i  433 (459)
T PRK06082        354 VKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLII  433 (459)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCcc
Confidence            7777777777777642100 012223344443321   11     1   122333445689998875 3   666432 5


Q ss_pred             CCCChhHHHHHHHHHHHhh
Q 015435          388 SSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       388 ~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++++++++++++.++++++
T Consensus       434 t~~eid~~~~~l~~~l~~~  452 (459)
T PRK06082        434 TREELTQALAILEEAIAKI  452 (459)
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            8899999999999988653

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.80  E-value=2.6e-17  Score=158.63  Aligned_cols=345  Identities=12%  Similarity=0.109  Sum_probs=202.9

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++++||+..|....+.| ..++.+++++.+++.+-......|.+.....++.+.+++.. ..     ..+.+.+  +
T Consensus        49 D~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~-p~-----~~~~v~f--~  119 (457)
T PRK05639         49 DVDGNVFIDFLAGAAAASTG-YSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEIS-PI-----ENPKVLF--G  119 (457)
T ss_pred             eCCCCEEEECCcCHHhhccC-CCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhC-CC-----CcCEEEE--e
Confidence            34678999999987655667 66778888888887611111112323333445666666644 21     1258999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhh-cC--------c-----eeeEEEeecCCCC--C----cChh
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTL-AG--------L-----SVKTYRYYDPATR--G----LNFQ  166 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~-~G--------~-----~~~~v~~~~~~~~--~----~d~~  166 (407)
                      +||++|++.++++.+......+|+....+|++....... .|        .     +++.+|..+....  .    -+.+
T Consensus       120 ~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  199 (457)
T PRK05639        120 LSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPD  199 (457)
T ss_pred             CchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHH
Confidence            999999999998887766666888888888876543221 11        1     1333433211100  0    0222


Q ss_pred             --------hHHHHHHc----CCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435          167 --------GLLEDLRA----APSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ  233 (407)
Q Consensus       167 --------~l~~~i~~----~~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~  233 (407)
                              .+++.+..    ..+..++++ -..+...|. ..+.+.+++|.++|++||+++|+||++.+|+..+   ..+
T Consensus       200 ~~~~~~~~~le~~l~~~~~~~~~iAAvI~-EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG---~~~  275 (457)
T PRK05639        200 ELINRFLDYLENYVFSHVVPPDEVAALFA-EPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTG---KWF  275 (457)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCceEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCc---hHH
Confidence                    34443321    133455555 333444566 4679999999999999999999999999887654   233


Q ss_pred             HHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHh
Q 015435          234 SVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKE  313 (407)
Q Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  313 (407)
                      ....+.- ..++++   ++|.++ .|+++|.+  ++. ++    +.+.... ....+.+.+++++.++.+.++...    
T Consensus       276 a~~~~gv-~PDiv~---~gK~l~-gG~pi~av--~~~-~~----i~~~~~~-~~~~T~~g~p~~~aaa~a~l~~l~----  338 (457)
T PRK05639        276 ASEWFEV-KPDLII---FGKGVA-SGMGLSGV--IGR-KE----LMDLTSG-SALLTPAANPVISAAAEATLEIIE----  338 (457)
T ss_pred             HHHhcCC-CCCEEE---echhhc-CCCcceeE--Eeh-HH----HHhhcCC-CcccCCCcCHHHHHHHHHHHHHHH----
Confidence            3333221 223333   799998 68888998  454 33    3331111 112344667777777777765321    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccccCCceeEEe--c-CC---CH---HHHHHhHhhccEEEcCCC--
Q 015435          314 WTLELKAMADRIISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTF--T-GL---NS---EQVAFMTKEYHIYMTSDG--  380 (407)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~--~-~~---~~---~~~~~~l~~~gi~~~~gg--  380 (407)
                          -+...++.+++.++|.+.|+++  +.+ ....+...|.++.+  . +.   +.   ..+...+.++|+.+.+.|  
T Consensus       339 ----~~~l~~~~~~~g~~l~~~L~~l~~~~~-~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~  413 (457)
T PRK05639        339 ----EENLLKNALKVGEFIKKRLLEMKESFE-VIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMF  413 (457)
T ss_pred             ----HccHHHHHHHHHHHHHHHHHHHHHhCC-CEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCCC
Confidence                1234455556677777777663  211 01222333433332  1 11   11   223444455899997743  


Q ss_pred             ----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 ----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 ----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                          ||+..- +++++++++++++.++++++
T Consensus       414 ~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~  444 (457)
T PRK05639        414 GNVIRITPPLVITKEIAEKGLEIMERAIKDA  444 (457)
T ss_pred             CCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence                665442 58899999999999998653

>PRK07678 aminotransferase; Validated

Probab=99.80  E-value=3.1e-17  Score=158.24  Aligned_cols=348  Identities=12%  Similarity=0.079  Sum_probs=203.2

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc-cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK-EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++++++++.+++. ...... .| +.....++.+.+++.. +.      .+.+++  
T Consensus        43 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~-~~~~~~~~~-~~~~~~~lae~l~~~~-~~------~~~v~f--  110 (451)
T PRK07678         43 DIQGNRYLDGMSGLWCVNVG-YGRKELAEAAYEQLK-TLSYFPLTQ-SHEPAIKLAEKLNEWL-GG------EYVIFF--  110 (451)
T ss_pred             eCCCCEEEEccccHHhhcCC-CCCHHHHHHHHHHHH-hcCcccccc-CCHHHHHHHHHHHHhC-CC------CCEEEE--
Confidence            45679999999987655667 667788888888876 111111 12 2222345555555544 21      257899  


Q ss_pred             cCCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHHhhc-Cc------------eeeEEEeecCCCC--C--
Q 015435          106 CLSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVFTLA-GL------------SVKTYRYYDPATR--G--  162 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~~~--~--  162 (407)
                      ++||++|++.++++.+...     +| .+|+...-+|++........ |.            .+..+|..+....  +  
T Consensus       111 ~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (451)
T PRK07678        111 SNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIES  190 (451)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCC
Confidence            9999999999998887653     23 47888888888765433321 11            1222222110000  0  


Q ss_pred             ---cC---hhhHHHHHH-cC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435          163 ---LN---FQGLLEDLR-AA-PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ  233 (407)
Q Consensus       163 ---~d---~~~l~~~i~-~~-~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~  233 (407)
                         .+   ++.+++.+. +. ++..++++-+ .+.-.|.+ .+++.++++.++|++||+++|+||+..+|+..+   ..+
T Consensus       191 ~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EP-iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~  266 (451)
T PRK07678        191 EDIYDLECVKEIDRVMTWELSETIAAVIMEP-IITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTG---KAF  266 (451)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCceEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCc---hhH
Confidence               01   123455564 22 3345555533 33334555 788999999999999999999999999998754   234


Q ss_pred             HHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHh--hhhhcccCCCChhHHHHHHHHhcChhh
Q 015435          234 SVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLK--LVIRPMYSSPPIHGASIVATILKDSTM  310 (407)
Q Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (407)
                      ....+.- ..+++   +++|.++ .| +++|.+  ++. +++.+.+.....  .+....+++.+++++.++.+.|+... 
T Consensus       267 ~~~~~gv-~PDiv---t~gK~lg-gG~~Pi~av--~~~-~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~-  337 (451)
T PRK07678        267 GFMNYGV-KPDII---TMAKGIT-SAYLPLSAT--AVK-KEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIME-  337 (451)
T ss_pred             HHHhcCC-CCCEE---Eeecccc-cCCcceeEE--EEc-HHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHH-
Confidence            4433321 22333   4799998 56 799998  455 444333321100  01123455778888888888776331 


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccccCCceeEEec---C------CCH---HHHHHhHhhccEEE
Q 015435          311 YKEWTLELKAMADRIISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFT---G------LNS---EQVAFMTKEYHIYM  376 (407)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~---~------~~~---~~~~~~l~~~gi~~  376 (407)
                           +  +...++.+++.++|.+.|++.  ..+ .+..+...|.++.+.   +      .+.   ..+...+.++||.+
T Consensus       338 -----~--~~~~~~~~~~g~~l~~~l~~~~~~~~-~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~  409 (451)
T PRK07678        338 -----N--ENLIERSAQLGELLLEQLKEELGEHP-LVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLII  409 (451)
T ss_pred             -----h--CCHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEE
Confidence                 1  134455666666666666542  111 012223334433321   1      111   22344455689998


Q ss_pred             cCC--------C--eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          377 TSD--------G--RISMAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       377 ~~g--------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      .+.        .  ||+... ++++|++++++++.+++++++
T Consensus       410 ~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~~  451 (451)
T PRK07678        410 GKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERIK  451 (451)
T ss_pred             eecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcC
Confidence            652        2  555442 588999999999999998763

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.80  E-value=3.2e-17  Score=157.63  Aligned_cols=350  Identities=14%  Similarity=0.083  Sum_probs=203.3

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC-CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY-LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ..+++.+||+..|....+.| ..++.+++++.+++. .......+ .+.....++.+.+++...+      ..+.+.+  
T Consensus        42 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~-~l~~~~~~~~~~~~~~~la~~l~~~~p~------~~~~v~f--  111 (442)
T PRK13360         42 THDGRRVLDGTAGLWCVNAG-HGRPEIVEAVRAQAG-ELDYAPAFQMGHPKAFELANRIAEIAPG------GLNHVFF--  111 (442)
T ss_pred             eCCCCEEEECchhHHHhccC-CCCHHHHHHHHHHHH-hCCCcccCCcCCHHHHHHHHHHHHhCCC------CCCEEEE--
Confidence            34678999999887655667 667788888888875 11111111 1112233455555554411      1268999  


Q ss_pred             cCCcccHHHHHHHHHHhhc-----C-CCeEEecCCCCCChHHHHh-hcC------------ceeeEEEeecC-CC--CCc
Q 015435          106 CLSGTGSLRVGAEFLARHY-----H-QLTIYIPQPTWGNHPKVFT-LAG------------LSVKTYRYYDP-AT--RGL  163 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~-----~-gd~Vi~~~p~y~~~~~~~~-~~G------------~~~~~v~~~~~-~~--~~~  163 (407)
                      +++|++|++.++++.+...     + ..+|+...-+|++...... ..|            ..+..+|.... ..  +..
T Consensus       112 ~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  191 (442)
T PRK13360        112 TNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSK  191 (442)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCC
Confidence            9999999999998877653     2 2578988888887643221 111            11222332100 00  111


Q ss_pred             --------ChhhHHHHHHcC--CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          164 --------NFQGLLEDLRAA--PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       164 --------d~~~l~~~i~~~--~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                              ..+.+++.+...  .+..++++ -..+...|.. .+++.+++|.++|++||+++|+||++.+|+..+   ..
T Consensus       192 ~~~~~~~~~~~~le~~l~~~~~~~~aaviv-Epi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG---~~  267 (442)
T PRK13360        192 GQPEHGAELADELERLVTLHDASTIAAVIV-EPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLG---AP  267 (442)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCcEEEEEE-ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---cc
Confidence                    145677777532  22334444 3334344655 678899999999999999999999998887654   22


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHh---hhhhcccCCCChhHHHHHHHHhcCh
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLK---LVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                      +....+.-. .+ +  -+++|.++ .| +++|.+  +++ +++.+.+...-.   .+....+++.+++++.++.+.|+-.
T Consensus       268 ~a~~~~gv~-PD-i--vt~gK~l~-gG~~P~gav--~~~-~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l  339 (442)
T PRK13360        268 FAAQYFGVT-PD-L--LTCAKGLT-NGAIPMGAV--FVS-SEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLY  339 (442)
T ss_pred             hhhhhcCCC-Cc-e--eeeeeccc-cCccceEEE--EEc-HHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence            322222111 22 2  26899997 45 788998  465 443333221100   0112234567888888888777532


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEE--ecCC----C--HHHHHHhHhhccEEEcCCC
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFT--FTGL----N--SEQVAFMTKEYHIYMTSDG  380 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~----~--~~~~~~~l~~~gi~~~~gg  380 (407)
                      .      +  +.+.++.+++.+++.+.|+++.....+..+...|.++.  +...    .  ...+...+.++||.+.+.+
T Consensus       340 ~------~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~  411 (442)
T PRK13360        340 E------R--EGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYTG  411 (442)
T ss_pred             H------h--CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEecC
Confidence            1      1  23556777777888888876531000111222222211  1111    1  1233344556899998876


Q ss_pred             ---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 ---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 ---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                         ||+..- ++++++++++++|.++++++
T Consensus       412 ~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        412 DILALSPPLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             CEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence               777432 58899999999999999764

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.80  E-value=3.1e-17  Score=140.68  Aligned_cols=324  Identities=14%  Similarity=0.168  Sum_probs=208.8

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      ...+||-+      +....|....++++.... ..++.  |+......+|.+.+|+.+ ++       +.-+|  ++|||
T Consensus        21 ~~~vDLRS------DTvT~PTdeMr~am~eA~-vgDdV--yGeD~tt~rLE~~vA~l~-GK-------EAgLF--v~SGT   81 (384)
T KOG1368|consen   21 HRSVDLRS------DTVTVPTDEMRRAMAEAS-VGDDV--YGEDPTTNRLEQRVAELF-GK-------EAGLF--VPSGT   81 (384)
T ss_pred             eecccccc------ccccCChHHHHHHHhhcc-cCccc--ccCCccHHHHHHHHHHHh-Cc-------cceee--ecccc
Confidence            35566663      343567777777766664 22333  545556678999999988 76       66777  88888


Q ss_pred             cHHHHHHHHHHhhc-CCCeEEecCCCCC-ChHH--HHhhcCceeeEEEeecCCCCCcChhhHHHHHHc------CCCCcE
Q 015435          111 GSLRVGAEFLARHY-HQLTIYIPQPTWG-NHPK--VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA------APSGAI  180 (407)
Q Consensus       111 ~a~~~~~~~~~~~~-~gd~Vi~~~p~y~-~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~~~  180 (407)
                      .++.++  ++..+. +|..||+-+-++. .|..  +....|+.++++.-  ++++.+++++++..+..      .|.+++
T Consensus        82 mgNlla--Im~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~--e~dgtm~ledIe~~ir~~~GD~H~p~T~L  157 (384)
T KOG1368|consen   82 MGNLLA--IMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKN--ENDGTMDLEDIEAAIRVPKGDCHMPPTKL  157 (384)
T ss_pred             cccHHH--HHHHhcCCCceEEeccchheeehhccChhhhccceeEeeee--CCCCeeeHHHHHHhhcCCCCCccCCCceE
Confidence            888887  355565 8999999987764 2222  33466777777765  66678999999999863      256788


Q ss_pred             EEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC
Q 015435          181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE  260 (407)
Q Consensus       181 v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  260 (407)
                      |++-++-+|-.|.++|.+++.++.++|++||+.|.+|.+.-.-...   ....++..+....|.+-++  +||.+|.   
T Consensus       158 IclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAav---asgV~vk~i~~~fDSVsiC--LSKglgA---  229 (384)
T KOG1368|consen  158 ICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAV---ASGVPVKKICSAFDSVSIC--LSKGLGA---  229 (384)
T ss_pred             EEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHH---HcCCCHHHHHHhhhhhhhh--hhccCCC---
Confidence            8885554444459999999999999999999999999984221111   0122444455444544333  7898764   


Q ss_pred             CcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          261 RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       261 r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      ++|.+  ++++++    ++++.+.+......+.-..++.++++...-.+   .    .. ..+.-.++...+.+.++..+
T Consensus       230 PVGSV--iVG~k~----FI~kA~~~RKalGGGmRQsGvLaaaaLval~~---~----~~-~L~~dHk~A~~lAe~~~~~~  295 (384)
T KOG1368|consen  230 PVGSV--IVGSKD----FIDKARHFRKALGGGMRQSGVLAAAALVALDE---N----VP-LLRADHKRAKELAEYINTPE  295 (384)
T ss_pred             CcccE--EEccHH----HHHHHHHHHHHhcCchhHHHHHHHHHHHHhhc---c----hH-HHHHHHHHHHHHHHHhcccc
Confidence            48998  466554    55555555544444444444444443332111   1    11 22333455566777777655


Q ss_pred             C-CCCcccccCCceeEEe----cCCCHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHHH
Q 015435          341 T-PGDWSHIIKQIGMFTF----TGLNSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIHA  401 (407)
Q Consensus       341 ~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~  401 (407)
                      . .  +++...+.++...    .+++.+.+-..+++.||.+.++.    ||.+.+ ++.++++.+...+..
T Consensus       296 ~i~--v~v~a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k  364 (384)
T KOG1368|consen  296 EIR--VEVPAVETNIVNMVLCQARLTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSK  364 (384)
T ss_pred             cee--eecchhhcceeeeecccccCCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHHH
Confidence            2 1  2333234443332    37788888777788999999885    777765 788999999998843

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.80  E-value=6.7e-17  Score=156.13  Aligned_cols=349  Identities=9%  Similarity=0.049  Sum_probs=206.3

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc--cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK--EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++.+||+..|....+.| ..++.+++++.+++. ......  .| ......++.+.+++.. ..     ..+.+++ 
T Consensus        43 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~-~l~~~~~~~~-~~~~~~~lae~L~~~~-p~-----~~~~v~f-  112 (466)
T PRK07030         43 DFEGKRYLDAVSSWWVNVFG-HANPRINQRIKDQVD-QLEHVILAGF-SHEPVIELSERLVKIT-PP-----GLSRCFY-  112 (466)
T ss_pred             ECCCCEEEEcchhHHhhcCC-CCCHHHHHHHHHHHH-hcCCcccccc-CCHHHHHHHHHHHHhC-CC-----CcCEEEE-
Confidence            45679999999987655567 667788888888876 111111  12 1222344555555533 11     1268999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----C-CCeEEecCCCCCChHHHHhhc-Cc------------eeeEEEeecCC--CCCc
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----H-QLTIYIPQPTWGNHPKVFTLA-GL------------SVKTYRYYDPA--TRGL  163 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~-gd~Vi~~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~--~~~~  163 (407)
                       +++|++|++.++++.+...     . ..+|+...-+|++........ |.            .+..+|..+..  ..+.
T Consensus       113 -~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~  191 (466)
T PRK07030        113 -ADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGM  191 (466)
T ss_pred             -eCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCC
Confidence             9999999999988876541     2 356888888888765433221 11            12223321100  0011


Q ss_pred             --------ChhhHHHHHHcCCC-CcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435          164 --------NFQGLLEDLRAAPS-GAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ  233 (407)
Q Consensus       164 --------d~~~l~~~i~~~~~-~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~  233 (407)
                              +++.+++.+.+.+. ..++++-+-.+...|. ..+++.++++.++|++||+++|+||+..+|+..+   ..+
T Consensus       192 ~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG---~~~  268 (466)
T PRK07030        192 SWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTG---TMF  268 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccc---cch
Confidence                    24556777764333 3444442212344466 4778999999999999999999999999998754   334


Q ss_pred             HHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHH---hhhhhcccCCCChhHHHHHHHHhcChh
Q 015435          234 SVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQL---KLVIRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                      ....+.- ..++++   ++|.++ .| +++|.+  +++ +++.+.+....   ..+....+++.+++++.++.+.|+-..
T Consensus       269 a~~~~gv-~PDiv~---~gKgl~-gG~~Pi~av--~~~-~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~  340 (466)
T PRK07030        269 ACEQAGI-RPDFLC---LSKALT-GGYLPLAAV--LTT-DTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFE  340 (466)
T ss_pred             HHHhcCC-CCCEEe---eehhcc-CCcccceEE--Eec-HHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            4333322 233343   589998 68 599998  454 44433332110   011223445678888888888776321


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC------------CH---HHHHHhHhhccE
Q 015435          310 MYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL------------NS---EQVAFMTKEYHI  374 (407)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~~~~~~l~~~gi  374 (407)
                              -+.+.++.+++.+++.+.|+++.....+.-+...|.++. +.+            +.   ..+...+.++|+
T Consensus       341 --------~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~g-ie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv  411 (466)
T PRK07030        341 --------QDNVIENNRALARRMAEATAHLADHPHVAEVRQTGMILA-IEMVQDKASKTPYPWQERRGLKVYQHALERGA  411 (466)
T ss_pred             --------hcCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEE-EEeccCccccccCcchhHHHHHHHHHHHHCCe
Confidence                    123456666777777777766521001222233343332 211            01   123344556899


Q ss_pred             EEcCCC---eEEec-CCCCCChhHHHHHHHHHHHhh
Q 015435          375 YMTSDG---RISMA-GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       375 ~~~~gg---Ris~~-~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+.+.|   |+... .+++++++.+++++.++++++
T Consensus       412 l~~~~g~~i~~~Ppl~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        412 LLRPLGSVVYFLPPYVITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             EEEecCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence            998866   66533 258899999999999999864

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.80  E-value=8.7e-17  Score=154.74  Aligned_cols=349  Identities=13%  Similarity=0.078  Sum_probs=204.8

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC-CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY-LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++.+++++.+++. .......+ .......++.+.+++.. ..     ..+.+++  
T Consensus        45 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~-~l~~~~~~~~~~~~~~~la~~L~~~~-p~-----~~~~v~f--  114 (445)
T PRK09221         45 DADGRKILDGTAGLWCCNAG-HGRPEIVEAVARQAA-TLDYAPAFQMGHPLAFELAERLAELA-PG-----GLDHVFF--  114 (445)
T ss_pred             eCCCCEEEEccccHhhccCC-CCCHHHHHHHHHHHH-hccCccccccCCHHHHHHHHHHHHhC-CC-----CCCEEEE--
Confidence            35678999999997655667 667788888888875 11111111 11222334555555544 11     1268999  


Q ss_pred             cCCcccHHHHHHHHHHhhc-----C-CCeEEecCCCCCChHHHHhhc-C------------ceeeEEEeec-CC--CCCc
Q 015435          106 CLSGTGSLRVGAEFLARHY-----H-QLTIYIPQPTWGNHPKVFTLA-G------------LSVKTYRYYD-PA--TRGL  163 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~-----~-gd~Vi~~~p~y~~~~~~~~~~-G------------~~~~~v~~~~-~~--~~~~  163 (407)
                      ++||++|++.++++.+.+.     + ..+|+...-+|++........ |            ..+..+|... ..  .++.
T Consensus       115 ~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (445)
T PRK09221        115 TNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSK  194 (445)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCC
Confidence            9999999999998877653     1 247888888887764322211 1            1122233210 00  0010


Q ss_pred             --------ChhhHHHHHHcC--CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          164 --------NFQGLLEDLRAA--PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       164 --------d~~~l~~~i~~~--~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                              ..+++++.+...  .+..++++ -......|.. .+.+.+++|.++|++||+++|+||++.+|+..+   ..
T Consensus       195 ~~~~~~~~~~~~l~~~i~~~~~~~iAavi~-Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG---~~  270 (445)
T PRK09221        195 GQPEHGAELADDLERLVALHDASTIAAVIV-EPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLG---AA  270 (445)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCcEEEEEE-ecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCc---hh
Confidence                    135667767533  23345555 3344445664 678889999999999999999999998887654   23


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHh---hhhhcccCCCChhHHHHHHHHhcCh
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLK---LVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                      +....+.-.. +   +-+++|.++ .| +++|.+  +++ +++.+.+...-.   .+....+.+.+++++.++.+.|+..
T Consensus       271 ~~~~~~gv~P-D---i~~~gK~l~-gG~~Pi~av--~~~-~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i  342 (445)
T PRK09221        271 FAAERFGVTP-D---IITFAKGLT-NGAIPMGAV--IAS-DEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIY  342 (445)
T ss_pred             hHHHhcCCCC-C---EEEeccccc-cCcccceee--EEc-HHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHH
Confidence            3333321112 2   235899997 45 688888  455 444333321000   1112234567788887777766532


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcccccCCceeEE--ecCC---C---HHHHHHhHhhccEEEcCC
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARG-TPGDWSHIIKQIGMFT--FTGL---N---SEQVAFMTKEYHIYMTSD  379 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~--~~~~---~---~~~~~~~l~~~gi~~~~g  379 (407)
                      .      +  +.+.++.+++.+++.+.|+++. .+ .+..+...|.+..  +...   +   ...+.+.+.++||.+.++
T Consensus       343 ~------~--~~l~~~~~~~g~~l~~~l~~l~~~~-~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~  413 (445)
T PRK09221        343 R------E--EDLFERAAELAPYFEDAVHSLKGLP-HVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT  413 (445)
T ss_pred             H------h--ccHHHHHHHHHHHHHHHHHhhccCC-CEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec
Confidence            1      1  2356777788888888887762 11 1121222232221  1111   1   123445555689999887


Q ss_pred             C---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          380 G---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 g---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |   ||+..- ++++++++++++|+++++++
T Consensus       414 ~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        414 GDTIALSPPLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             CCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            6   776432 58899999999999999764

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.79  E-value=7e-17  Score=156.04  Aligned_cols=351  Identities=10%  Similarity=0.039  Sum_probs=207.7

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc-CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE-YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++++++++.+++. ....... +.......++.+.+++.. ..     ..+.+++  
T Consensus        52 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~-~l~~~~~~~~~~~~~~~lae~L~~~~-p~-----~~~~v~f--  121 (460)
T PRK06916         52 DVNGNEYYDGVSSIWLNVHG-HQVPELDEAIREQLN-KIAHSTLLGLANVPSILLAEKLIEVV-PE-----GLKKVFY--  121 (460)
T ss_pred             eCCCCEEEEcchhHHHhhcC-CCCHHHHHHHHHHHH-hCCCccccccCCHHHHHHHHHHHHhC-CC-----CCCEEEE--
Confidence            45678999998886544566 667788888888886 2111111 112223345556666544 11     1258999  


Q ss_pred             cCCcccHHHHHHHHHHhh-----cC-CCeEEecCCCCCChHHHHhhc-Cc------------eeeEEEeecCC--CCC--
Q 015435          106 CLSGTGSLRVGAEFLARH-----YH-QLTIYIPQPTWGNHPKVFTLA-GL------------SVKTYRYYDPA--TRG--  162 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~-----~~-gd~Vi~~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~--~~~--  162 (407)
                      ++||++|++.++++.+..     .+ ..+|+...-+|++........ |.            .+..+|..+..  ..+  
T Consensus       122 ~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~  201 (460)
T PRK06916        122 SDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGND  201 (460)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCC
Confidence            999999999999887764     23 357888888888765433221 11            12223321100  001  


Q ss_pred             ------cChhhHHHHHHcCCC-CcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435          163 ------LNFQGLLEDLRAAPS-GAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS  234 (407)
Q Consensus       163 ------~d~~~l~~~i~~~~~-~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~  234 (407)
                            -+++++++.+...+. ..++++-+-.+...|.+ ++++.++++.++|++||+++|+||+..+|+..+   ..+.
T Consensus       202 ~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG---~~~a  278 (460)
T PRK06916        202 KAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTG---KMFA  278 (460)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCc---hhhH
Confidence                  135566777764333 34444422124555665 699999999999999999999999999887654   3333


Q ss_pred             HHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHH---hhhhhcccCCCChhHHHHHHHHhcChhh
Q 015435          235 VRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQL---KLVIRPMYSSPPIHGASIVATILKDSTM  310 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (407)
                      ...+.- ..+++   .++|.++ .| +++|.+  ++. +++.+.+....   ..+....+.+.+++++.++.+.|+... 
T Consensus       279 ~~~~gv-~PDiv---~~gK~l~-gG~~Pi~av--~~~-~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~-  349 (460)
T PRK06916        279 CEHENV-TPDIM---TAGKGLT-GGYLPIAIT--VTT-DEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYE-  349 (460)
T ss_pred             HHhcCC-CCCee---eeehhhh-cCcccccee--eec-HHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHH-
Confidence            333322 22333   3799998 67 599998  455 44333322111   111122345678888888887775321 


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEe--c-CC--------C---HHHHHHhHhhccEEE
Q 015435          311 YKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTF--T-GL--------N---SEQVAFMTKEYHIYM  376 (407)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~-~~--------~---~~~~~~~l~~~gi~~  376 (407)
                           +  +.+.++++++.+++.+.|+++.....+..+...|.++.+  . +-        +   ...+...+.++||.+
T Consensus       350 -----~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~  422 (460)
T PRK06916        350 -----K--TNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLT  422 (460)
T ss_pred             -----h--ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEE
Confidence                 1  234566777777777777765210012122333433332  1 10        0   123444455689999


Q ss_pred             cCCC---eEEec-CCCCCChhHHHHHHHHHHHhh
Q 015435          377 TSDG---RISMA-GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       377 ~~gg---Ris~~-~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+.|   |+... .+++++++.++++|.++++++
T Consensus       423 ~~~g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~  456 (460)
T PRK06916        423 RPLGNTIVFMPPLASTIDELDEMLRILYKAISDV  456 (460)
T ss_pred             EecCCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            9876   66533 258899999999999999764

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.79  E-value=2e-17  Score=154.53  Aligned_cols=320  Identities=13%  Similarity=0.070  Sum_probs=197.2

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++.++|+..|....+.| ..++++++++.+++. .........+.....++.++++++. +.       +.+++  +
T Consensus        20 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~-~~~~~~~~~~~~~~~~la~~l~~~~-~~-------~~v~~--~   87 (364)
T PRK04013         20 DSQGRRYLDLIAGIGVNVLG-HNHPEWVEEMSEQLE-KLVVAGPMFEHEEKEEMLEELSKWV-NY-------EYVYM--G   87 (364)
T ss_pred             ECCCCEEEEcccChhhccCC-CCCHHHHHHHHHHHH-hcCCccCCcCCHHHHHHHHHHHhhc-CC-------CEEEE--e
Confidence            34678999999887655667 667788888888876 2111111112334455666666654 22       68999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc--------Cce-----eeEEEeecCCCCCcChhhHHHHHH
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA--------GLS-----VKTYRYYDPATRGLNFQGLLEDLR  173 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~--------G~~-----~~~v~~~~~~~~~~d~~~l~~~i~  173 (407)
                      +||++|++.++++.......++|+....+|++........        +..     +..+|.       .|++.+++.+.
T Consensus        88 ~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~i~  160 (364)
T PRK04013         88 NSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF-------NDVEAAKEAIT  160 (364)
T ss_pred             CchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC-------CCHHHHHHHhc
Confidence            9999999999888776654489999998888765433321        111     111211       26788888886


Q ss_pred             cCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecC
Q 015435          174 AAPSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA  252 (407)
Q Consensus       174 ~~~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  252 (407)
                        ++..++++. ..+...|. ..+++.++++.++|++||+++|+||+..++ ..+   ..+....+ ....++++   ++
T Consensus       161 --~~~aAvivE-pi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG---~~~a~~~~-gv~PDiv~---~g  229 (364)
T PRK04013        161 --KETAAVIFE-PIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTG---KFLAIEHY-KVEPDIVT---MG  229 (364)
T ss_pred             --CCcEEEEEc-CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCC---chhHHHhc-CCCCCEEE---ec
Confidence              456676663 33333444 467789999999999999999999999988 543   23333333 22233333   69


Q ss_pred             ccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 015435          253 KNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQL  332 (407)
Q Consensus       253 K~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (407)
                      |.++ .|+++|.+  +.. ++    +.    ......+++.+++++.++.+.|+-.+      +  +.+.++.++.   +
T Consensus       230 K~lg-gG~P~~a~--~~~-~~----~~----~~~~~~T~~gnp~~~aaa~a~l~~i~------~--~~l~~~~~~~---l  286 (364)
T PRK04013        230 KGIG-NGVPVSLT--LTN-FD----VE----RGKHGSTFGGNPLACKAVAVTLRILR------R--ERLVEKAGEK---F  286 (364)
T ss_pred             cccc-CCceeEEE--Eec-cc----cc----CCCcCCCCCcCHHHHHHHHHHHHHHH------h--ccHHHHHHHH---H
Confidence            9998 58999998  454 22    21    11223455788888888887776321      1  1111222211   2


Q ss_pred             HHHHHhcCCCCCcccccCCceeEEecCCC--HHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          333 FDALSARGTPGDWSHIIKQIGMFTFTGLN--SEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       333 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                       +.+.. +.   +.-+...| ++.-+.+.  ...+...+.++|+.+.+.|    ||...- ++++++++++++|.+++++
T Consensus       287 -~~l~~-~~---v~~vRG~G-l~~gve~~~~~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~  360 (364)
T PRK04013        287 -IEIKG-ER---VVTTRGRG-LMIGIVLKKPVGKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVIND  360 (364)
T ss_pred             -HHhcc-Cc---ceeeeeCc-EEEEEEeCCcHHHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHHHHH
Confidence             12211 10   22223333 33323332  3344455556899998765    775442 5889999999999999875

>PRK06105 aminotransferase; Provisional

Probab=99.79  E-value=5.7e-17  Score=156.67  Aligned_cols=350  Identities=13%  Similarity=0.077  Sum_probs=205.1

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCC--CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL--PIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~--~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++++||+..|....+.| ..++.+++++.+++. .......+.  ......++.+.+++.. ..     ..+.+++ 
T Consensus        44 D~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~q~~-~~~~~~~~~~~~~~~~~~lae~L~~~~-p~-----~~~~v~f-  114 (460)
T PRK06105         44 DDAGKRYIEGMAGLWSVALG-FSEQRLVEAAARQMK-KLPFYHTFSHKSHGPVIDLAEKLVAMA-PV-----PMSKVFF-  114 (460)
T ss_pred             ECCCCEEEEcchhHHhccCC-CCCHHHHHHHHHHHH-hCCCeecccccCCHHHHHHHHHHHHhC-CC-----CCCEEEE-
Confidence            45679999999987655677 667788888888886 211111111  1222334555555544 21     1268999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHHhhc-Cc------------eeeEEEeecCCCCC---
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVFTLA-GL------------SVKTYRYYDPATRG---  162 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~~~~---  162 (407)
                       ++||++|+++++++.....     +| .+|+...-+|++........ |.            .+..++..+....+   
T Consensus       115 -~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  193 (460)
T PRK06105        115 -TNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPG  193 (460)
T ss_pred             -eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCC
Confidence             9999999999988865442     23 46888888887665332211 11            12222221100000   


Q ss_pred             --------cChhhHHHHHHc-CCC-CcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          163 --------LNFQGLLEDLRA-APS-GAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       163 --------~d~~~l~~~i~~-~~~-~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                              ...+++++.+.. .++ ..++++ -.-+.-.|.. .+++.++++.++|++||+++|+||++.+|+..+   +
T Consensus       194 ~~~~~~~~~~~~~le~~~~~~~~~~iAavIv-EPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG---~  269 (460)
T PRK06105        194 ESEEAFATRLANELEALILAEGPDTIAAFIG-EPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG---N  269 (460)
T ss_pred             CChHHHHHHHHHHHHHHHHHcCCCceEEEEE-ccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCc---h
Confidence                    013556776642 223 345555 3334444554 689999999999999999999999999897654   3


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHh---hhhhcccCCCChhHHHHHHHHhcC
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLK---LVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                      .+....+.- ..+++   +++|.++ .| +++|.+  +++ +++.+.+.....   .+....+.+.+++++.++.+.|+-
T Consensus       270 ~f~~~~~~v-~PDi~---~~gK~lg-gG~~P~~av--~~~-~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~  341 (460)
T PRK06105        270 MFGCETFGI-KPDIL---VMSKQLS-SSYQPLSAV--LMN-EKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAI  341 (460)
T ss_pred             hhhHHhcCC-CCCee---eeecccc-cCcccceEE--EEc-HHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHH
Confidence            334333221 12222   5899998 45 688998  455 443333221100   011223457788888888777753


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEe--c-C------CC-----HHHHHHhHhhcc
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTF--T-G------LN-----SEQVAFMTKEYH  373 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~-~------~~-----~~~~~~~l~~~g  373 (407)
                      ..      +  ++..++.+++.++|.+.|+++.....+..+...|.++.+  . +      .+     ...+...+.++|
T Consensus       342 i~------~--~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~G  413 (460)
T PRK06105        342 IE------E--RDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHG  413 (460)
T ss_pred             HH------h--ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCC
Confidence            21      1  245567777777887777766210011222333433321  1 1      00     123444556689


Q ss_pred             EEEcCCC---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          374 IYMTSDG---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       374 i~~~~gg---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.+.+.|   |++..- ++++|++++++++.++++++
T Consensus       414 vl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  450 (460)
T PRK06105        414 VISRAMGDTLAFCPPLIITAAQVDEMVDRFGRALDDV  450 (460)
T ss_pred             eEEEecCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence            9998866   776543 58899999999999998754

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.79  E-value=1.1e-16  Score=153.32  Aligned_cols=155  Identities=15%  Similarity=0.145  Sum_probs=120.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCceee
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGLSVK  151 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~~~~  151 (407)
                      ....|.+.++++. +.       +..++  +++|++|+.+++  ...+.+||+|+++.+.|.+...    .+...|++++
T Consensus        64 ~~~~le~~lA~l~-g~-------~~al~--~~SG~~Ai~~al--~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~  131 (427)
T PRK05994         64 TNAVLEERVAALE-GG-------TAALA--VASGHAAQFLVF--HTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVR  131 (427)
T ss_pred             cHHHHHHHHHHHh-CC-------CcEEE--EcCHHHHHHHHH--HHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEE
Confidence            3677888899887 43       45777  999999999884  4458899999999999986544    3567899988


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      .++.       .|++++++++.  ++++++++ ++|+||||.+.+   +++|+++|+++|+++|+|++++.....    .
T Consensus       132 ~vd~-------~d~~~l~~ai~--~~tklV~v-esp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~~----~  194 (427)
T PRK05994        132 WADA-------DDPASFERAIT--PRTKAIFI-ESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYLI----R  194 (427)
T ss_pred             EECC-------CCHHHHHHhcC--cCCeEEEE-ECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCccccccC----C
Confidence            8854       27889999887  56788777 899999999875   788888899999999999998632211    0


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                        +   + . ....+++.|++|.++.+|-.+|.++
T Consensus       195 --p---l-~-~gaDivv~S~tK~lgg~~~~~gG~v  222 (427)
T PRK05994        195 --P---I-E-HGADIVVHSLTKFLGGHGNSMGGII  222 (427)
T ss_pred             --c---c-c-cCCcEEEEcCccccCCCCCcEEEEE
Confidence              1   1 1 2345888999999998787778763

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.79  E-value=3.2e-17  Score=156.70  Aligned_cols=339  Identities=15%  Similarity=0.132  Sum_probs=198.7

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++++||+..|....+.| ..++.+++++.+++.  ......+ +.....++.+.+++.+ ..     ..+.+.+  +
T Consensus        49 D~dG~~yiD~~~g~~~~~lG-h~~p~v~~ai~~q~~--~~~~~~~-~~~~~~~la~~L~~~~-~~-----~~~~v~f--~  116 (433)
T PRK00615         49 DSLGKTFIDFCGSWGSLIHG-HSHPKICDAIQQGAE--RGTSYGL-TSEQEILFAEELFSYL-GL-----EDHKIRF--V  116 (433)
T ss_pred             ECCCCEEEEcccchhccccC-CCCHHHHHHHHHHHH--hCCCCCC-CCHHHHHHHHHHHHhC-CC-----CcCEEEE--e
Confidence            34678999999886655567 667788888888876  2222222 2233445556666554 21     1258999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH-H---hhcCce---e-eEE--EeecCCC---CCcChhhHHHHHH
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV-F---TLAGLS---V-KTY--RYYDPAT---RGLNFQGLLEDLR  173 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~-~---~~~G~~---~-~~v--~~~~~~~---~~~d~~~l~~~i~  173 (407)
                      ++|++|++.++++.+......+|+...-+|+++.+. +   ...+..   . ..+  +...+..   .--|++.+++.+.
T Consensus       117 ~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  196 (433)
T PRK00615        117 SSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMN  196 (433)
T ss_pred             CchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHH
Confidence            999999999998887665456788888888886532 1   111100   0 000  0000000   0126788888886


Q ss_pred             cCCC-CcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          174 AAPS-GAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       174 ~~~~-~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                      +... ..++++ -....-.|.. .+++.+++|.++|++||+++|+||++.++ ..+   .......+.- ..+++   ++
T Consensus       197 ~~~~~~aavI~-Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G---~~ga~~~~gv-~PDi~---~~  267 (433)
T PRK00615        197 SLGHRVAGVIF-EPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVA---QGGAAAIYHV-KPDIT---VY  267 (433)
T ss_pred             hcCCceEEEEE-CCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccc---HhHHHHhcCC-CCCeE---EE
Confidence            4333 344444 3333334664 56889999999999999999999999877 332   2222222211 22233   38


Q ss_pred             CccccccCCCcceeEEeecChhhHHHHHHHHhhh---hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435          252 AKNMGLYGERVGALSIVCKTEDVASRVESQLKLV---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       252 sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  328 (407)
                      +|.+| .|+++|++  +++ ++    +.+.+...   ....+.+.+++++.++.+.|+...      +  +...++++++
T Consensus       268 gK~lg-gG~p~~av--~~~-~~----i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~------~--~~~~~~~~~~  331 (433)
T PRK00615        268 GKILG-GGLPAAAV--VAH-KS----IMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCR------E--QGFYTQLSTL  331 (433)
T ss_pred             ccccc-CCcceeee--eec-HH----HHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHh------c--ccHHHHHHHH
Confidence            99998 67888888  454 44    44433211   112334567777888777775321      1  1234455555


Q ss_pred             HHHHHHHHH----hcCCCCCcccccCCceeEEec--C-----C------CHH---HHHHhHhhccEEEcCCC--e--EEe
Q 015435          329 RQQLFDALS----ARGTPGDWSHIIKQIGMFTFT--G-----L------NSE---QVAFMTKEYHIYMTSDG--R--ISM  384 (407)
Q Consensus       329 ~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~--~-----~------~~~---~~~~~l~~~gi~~~~gg--R--is~  384 (407)
                      .+++.+.|+    +.+.+  +.... .|.++.+.  .     +      +.+   .+...+.++||.+.+..  .  ++.
T Consensus       332 g~~l~~~l~~~~~~~g~~--v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~ls~  408 (433)
T PRK00615        332 EQNFLSPIEEMIRSQGFP--VSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEASFLSS  408 (433)
T ss_pred             HHHHHHHHHHHHHHcCCC--eEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCccccccceec
Confidence            555544444    33422  22222 33333321  1     0      111   24445555899998864  2  566


Q ss_pred             cCCCCCChhHHHHHHHHHHHhh
Q 015435          385 AGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       385 ~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+ +++|++++++++.++++.+
T Consensus       409 ~h-t~~did~~~~a~~~~~~~~  429 (433)
T PRK00615        409 AH-SMENLDYAQNVLIDSLEKV  429 (433)
T ss_pred             CC-CHHHHHHHHHHHHHHHHHH
Confidence            65 9999999999999998764

>PRK06917 hypothetical protein; Provisional

Probab=99.79  E-value=5.8e-17  Score=156.08  Aligned_cols=350  Identities=11%  Similarity=0.070  Sum_probs=203.9

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc--cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK--EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++++||+..|....+.| ..++++++++.+++. ......  .| ......++.+.+++...+      ..+.+++ 
T Consensus        27 D~dG~~ylD~~~g~~~~~lG-h~hp~v~~Ai~~ql~-~~~~~~~~~~-~~~~~~~lae~L~~~~p~------~~~~v~f-   96 (447)
T PRK06917         27 DQNGNKYFDGSSGAVTAGIG-HGVKEIADAIKEQAE-EVSFVYRSQF-TSEPAEKLAKKLSDLSPG------DLNWSFF-   96 (447)
T ss_pred             eCCCCEEEECchhHHhccCC-CCCHHHHHHHHHHHh-hCcCcccccc-CCHHHHHHHHHHHHhCCC------CCCEEEE-
Confidence            45678999999886645567 667788888888886 211111  12 122234455555554411      1257899 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHHhh-cCc------------eeeEEEeecCCCC--Cc
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVFTL-AGL------------SVKTYRYYDPATR--GL  163 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~~~-~G~------------~~~~v~~~~~~~~--~~  163 (407)
                       +++|++|++.++++.....     .| .+|+...-+|++....... .|.            .+..++.......  +.
T Consensus        97 -~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  175 (447)
T PRK06917         97 -VNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQK  175 (447)
T ss_pred             -eCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCC
Confidence             9999999999988875441     23 5788888888877654332 111            1111221100000  00


Q ss_pred             --------ChhhHHHHHHcC--CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          164 --------NFQGLLEDLRAA--PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       164 --------d~~~l~~~i~~~--~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                              +++.+++.+.+.  .+..++++-+-..+..|. ..+++.+++|.++|++||+++|+||+..+|+..+   ..
T Consensus       176 ~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG---~~  252 (447)
T PRK06917        176 VYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTG---AM  252 (447)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCccc---ch
Confidence                    235666667533  234556664333333444 4679999999999999999999999999887654   23


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhH
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMY  311 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  311 (407)
                      +....+.- ..++   -+++|.++ .|. ++|.+  ++. +++.+.+...-..+....+.+.+++++.++.+.|+...  
T Consensus       253 ~a~~~~gv-~PDi---~~~gK~l~-~G~~Pi~a~--~~~-~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~--  322 (447)
T PRK06917        253 FAMEHWGV-EPDI---MTLGKGLG-AGYTPIAAT--VVS-DRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYME--  322 (447)
T ss_pred             hhHHhcCC-CCCE---EEeeehhc-cCCcceEEE--EEc-HHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHH--
Confidence            33332221 2233   34799998 675 88988  455 44433322110011122345678888888887776321  


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcccccCCceeEEe--c-C------CC-----HHHHHHhHhhccEEE
Q 015435          312 KEWTLELKAMADRIISMRQQLFDALSARGTPG-DWSHIIKQIGMFTF--T-G------LN-----SEQVAFMTKEYHIYM  376 (407)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~--~-~------~~-----~~~~~~~l~~~gi~~  376 (407)
                            -+.+.++++++.++|.+.|+++.... ....+...|.++.+  . +      ..     ...+...+.++||.+
T Consensus       323 ------~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~  396 (447)
T PRK06917        323 ------KHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLL  396 (447)
T ss_pred             ------HCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEE
Confidence                  12345666677777777776652110 02222334444332  1 1      11     122334455589999


Q ss_pred             cCC--------C---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          377 TSD--------G---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       377 ~~g--------g---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+.        +   |++..- ++++|++.+++++.++++++
T Consensus       397 ~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  438 (447)
T PRK06917        397 YPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEM  438 (447)
T ss_pred             EecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            764        2   665442 48899999999999998753

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.79  E-value=8.4e-17  Score=154.30  Aligned_cols=345  Identities=11%  Similarity=0.017  Sum_probs=203.0

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+++++||..|....+.| ..++.+++++.+++.+-......+.......++.+.+++.. ...     -+.+++  ++
T Consensus        42 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~-----~~~v~f--~~  112 (427)
T TIGR00508        42 DDGRRLIDGMSSWWAAIHG-YNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMT-PNA-----LDCVFL--AD  112 (427)
T ss_pred             CCCCEEEEccchHHHhcCC-CCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhC-CCC-----CCEEEE--eC
Confidence            4578999999886544567 66778888888887611111111112233445566666554 211     268999  99


Q ss_pred             CcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHHhhc-Cce-------------eeEEEeecCCCC-----C
Q 015435          108 SGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVFTLA-GLS-------------VKTYRYYDPATR-----G  162 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~~~~-G~~-------------~~~v~~~~~~~~-----~  162 (407)
                      +|++|++.++++.....     +| .+|+...-+|.+....+... |..             +..++.... .+     .
T Consensus       113 sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~  191 (427)
T TIGR00508       113 SGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQN-RFDEEWNE  191 (427)
T ss_pred             CcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCc-cccchhHH
Confidence            99999999988876542     23 57888888888765433321 210             111111000 01     1


Q ss_pred             cChhhHHHHHHcCCCC-cEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435          163 LNFQGLLEDLRAAPSG-AIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA  240 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~-~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~  240 (407)
                      -|++++++.+.+.+.. .++++-+-.++-.|. .++.+++++|.++|++||+++|+||++.+++..+   ..+....+.-
T Consensus       192 ~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G---~~~~~~~~~v  268 (427)
T TIGR00508       192 EAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTG---KLFACEHAGV  268 (427)
T ss_pred             HHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC---ccchhhhcCC
Confidence            1456777777643333 344442211444455 4678999999999999999999999998876654   2222222211


Q ss_pred             cCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhh-----hhcccCCCChhHHHHHHHHhcChhhHHhH
Q 015435          241 DGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLV-----IRPMYSSPPIHGASIVATILKDSTMYKEW  314 (407)
Q Consensus       241 ~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  314 (407)
                       ..+++   .++|.++ .|+ .++.+  +.+ ++    +.+.+...     ....++..+++++.++.+.++...     
T Consensus       269 -~pDi~---~~gK~l~-gG~~p~~a~--~~~-~~----~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~-----  331 (427)
T TIGR00508       269 -VPDIL---CVGKALT-GGYMTLSAT--VTT-DK----VAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILL-----  331 (427)
T ss_pred             -CCCEE---Eechhhh-cCcccceEE--EEc-HH----HHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHH-----
Confidence             22333   3799996 674 67776  344 44    44434321     122233557778888877776321     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec---CCCHHHHHHhHhhccEEEcCCC---eEEecC-C
Q 015435          315 TLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT---GLNSEQVAFMTKEYHIYMTSDG---RISMAG-L  387 (407)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~gg---Ris~~~-~  387 (407)
                       +  +...++++++.++|.+.|++++...........|.++.+.   ......+...+.++||.+.+.+   |++..- +
T Consensus       332 -~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gv~~~~~~~~l~~~ppl~~  408 (427)
T TIGR00508       332 -E--GEWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPVNVEELQKKFVEQGVWIRPFGKLIYVMPPYII  408 (427)
T ss_pred             -h--CCHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCccCHHHHHHHHHHCCeEEEecCCEEEEECCCCC
Confidence             1  1345677778888888887764210111122223333221   1233445555566899998876   666542 4


Q ss_pred             CCCChhHHHHHHHHHHHh
Q 015435          388 SSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       388 ~~e~i~~~~~~l~~~l~~  405 (407)
                      ++++++++++++.+++++
T Consensus       409 t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       409 TTEQLQKLTAALIEALHE  426 (427)
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            889999999999999865

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK07036 hypothetical protein; Provisional

Probab=99.79  E-value=1.7e-16  Score=153.46  Aligned_cols=349  Identities=11%  Similarity=0.095  Sum_probs=202.1

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++++||+..|....+.| ..++++++++.+++. .......+  .+.....++.+.+++...+      ..+.+++ 
T Consensus        47 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~-~~~~~~~~~~~~~~~~~~lae~L~~~~p~------~~~~v~f-  117 (466)
T PRK07036         47 DADGRRYLDGIGGMWCVNVG-YGREEMADAIADQAR-RLPYYTPFGDMTNAPAAELAAKLAELAPG------DLNHVFL-  117 (466)
T ss_pred             ECCCCEEEECcccHHhhcCC-CCCHHHHHHHHHHHH-hCcccccccccCCHHHHHHHHHHHHhCCC------CcCEEEE-
Confidence            45678999999887655666 667788888888875 11111111  1222233445555544311      1268999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----C-CCeEEecCCCCCChHHHHhhc-C------------ceeeEEEeecCC--CCCc
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----H-QLTIYIPQPTWGNHPKVFTLA-G------------LSVKTYRYYDPA--TRGL  163 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~-gd~Vi~~~p~y~~~~~~~~~~-G------------~~~~~v~~~~~~--~~~~  163 (407)
                       ++||++|++.++++.+...     . ..+|+...-+|++........ |            ..+..++..+..  ..+.
T Consensus       118 -~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  196 (466)
T PRK07036        118 -TTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGM  196 (466)
T ss_pred             -eCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCC
Confidence             9999999999998876552     2 257888888888765433221 1            112233321110  0111


Q ss_pred             C--------hhhHHHHHHc-C-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          164 N--------FQGLLEDLRA-A-PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       164 d--------~~~l~~~i~~-~-~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      .        .+.+++.+.. . .+..++++- ..+...|.. .+++.+++|.++|++||+++|+||+..+|+..+   +.
T Consensus       197 ~~~~~~~~~~~~~~~~i~~~~~~~iAavi~E-Pv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~  272 (466)
T PRK07036        197 SEAAFCDFLVDEFEDKILSLGADNIAAFIAE-PILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG---HF  272 (466)
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCCceEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCc---hh
Confidence            1        2344555542 2 234555553 334444554 788999999999999999999999999997654   22


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHH---HhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQ---LKLVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                      +.......-..+++   +++|.++ .| +++|.+  ++. +++.+.+...   -..+....+++.+++++.++.+.|+..
T Consensus       273 ~~~~~~~gv~PDiv---t~gK~l~-gG~~Pi~av--~~~-~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i  345 (466)
T PRK07036        273 FASEAVFGIQPDII---TFAKGLT-SGYQPLGAV--IIS-ERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIM  345 (466)
T ss_pred             hhhhhhcCCCCCEE---EEccccc-cCccccEEE--EEc-HHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence            33321111122333   4799998 67 589998  455 4444433211   001122235567888888888877632


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC------------C---HHHHHHhHhhcc
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL------------N---SEQVAFMTKEYH  373 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~l~~~g  373 (407)
                      .        -+.+.++.+++.++|.+.|+.+.....+..+...|.++. +.+            +   ...+...+.++|
T Consensus       346 ~--------~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~-ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  416 (466)
T PRK07036        346 E--------REGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMAC-VECVADKGSKALLPEDIAIGQRIDRHCQERG  416 (466)
T ss_pred             H--------hCCHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEE-EEEccCccccCCCCchhHHHHHHHHHHHHCC
Confidence            1        124556666777777777765421001122233344333 211            1   122334455689


Q ss_pred             EEEcCCC---eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          374 IYMTSDG---RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       374 i~~~~gg---Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                      |.+.+.|   |++... ++++|++++++++.+++++
T Consensus       417 vl~~~~~~~~~l~Ppl~it~~~id~~~~~l~~al~~  452 (466)
T PRK07036        417 LLVRPLEHLCVLSPPLIITRAQIDEIVAILRAAIEE  452 (466)
T ss_pred             cEEeecCCEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence            9998865   666432 4889999999999888864

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.79  E-value=1.2e-16  Score=154.33  Aligned_cols=346  Identities=14%  Similarity=0.110  Sum_probs=203.5

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc-CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE-YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++.+++++.+++. .....+. +.......++.+.+++...+...   ..+.+++  
T Consensus        59 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~-~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~---~~~~v~f--  131 (464)
T PRK06938         59 DVEGRQFIDCLAGAGTLALG-HNHPVVIEAIQQVLA-DELPLHTLDLTTPVKDQFVQDLFASLPEAFA---REAKIQF--  131 (464)
T ss_pred             eCCCCEEEEccCCccccccC-CCCHHHHHHHHHHHH-hhhcccccccCCHHHHHHHHHHHHhCccccc---ccceEEE--
Confidence            45679999999997666677 667788888888875 1111111 11222233445555554411100   0024655  


Q ss_pred             c-CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-C------------ceeeEEEeecCC--CCC-------
Q 015435          106 C-LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-G------------LSVKTYRYYDPA--TRG-------  162 (407)
Q Consensus       106 t-~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G------------~~~~~v~~~~~~--~~~-------  162 (407)
                      + ++|++|++.++++.+......+|+...-+|++........ |            -++..+|..+..  .++       
T Consensus       132 ~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  211 (464)
T PRK06938        132 CGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGV  211 (464)
T ss_pred             eCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHH
Confidence            5 7999999999988876655568888888888775433321 1            012333331110  000       


Q ss_pred             -cChhhHHHHHHcCC----CCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHH
Q 015435          163 -LNFQGLLEDLRAAP----SGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR  236 (407)
Q Consensus       163 -~d~~~l~~~i~~~~----~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~  236 (407)
                       .+++.+++.+.+..    +..++++-+ -+.-.|.+ .+.+.++++.++|++||+++|+||+..+|+..+   ..+...
T Consensus       212 ~~~~~~l~~~i~~~~~~~~~iAAvI~EP-iqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG---~~~a~e  287 (464)
T PRK06938        212 RANLHYLENLLDDPESGVVLPAAVILEV-VQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTG---KMFAFE  287 (464)
T ss_pred             HHHHHHHHHHHHhhccCCCceEEEEEcc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---HHHHHH
Confidence             12566777775321    345555533 23333554 679999999999999999999999999998764   334433


Q ss_pred             HHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435          237 MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTL  316 (407)
Q Consensus       237 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  316 (407)
                      .+.- ..++++   ++|.++ .|+++|.+  +..     +++ +.+.......+++.+++++.++.+.|+-..       
T Consensus       288 ~~gv-~PDiv~---~gKglg-gG~PlsAv--~~~-----~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~-------  347 (464)
T PRK06938        288 HAGI-IPDVVV---LSKAIG-GSLPLAVV--VYR-----EWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIK-------  347 (464)
T ss_pred             hcCC-CCCEEE---eecccc-CCCceEEE--eeh-----hHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHH-------
Confidence            3321 233443   689998 68999999  455     222 222222223455778888888888776321       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC--CCCCcccccCCceeEEe--cCC------------CH---HHHHHhHhhccEEEc
Q 015435          317 ELKAMADRIISMRQQLFDALSARG--TPGDWSHIIKQIGMFTF--TGL------------NS---EQVAFMTKEYHIYMT  377 (407)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~--~~~------------~~---~~~~~~l~~~gi~~~  377 (407)
                       -+++.++.+++.++|.+.|+++-  .+ .+.-+...|-++.+  ..-            +.   ..+...+.++|+.+.
T Consensus       348 -~~~l~~~~~~~G~~l~~~L~~l~~~~~-~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~  425 (464)
T PRK06938        348 -EHRLAEHAAAMGERLREHLRQLQRDYP-QLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILE  425 (464)
T ss_pred             -HhHHHHHHHHHHHHHHHHHHHHHHhCC-CeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEe
Confidence             12344566666667777666541  11 01222333433322  110            11   123344456899987


Q ss_pred             CCC------eEEec-CCCCCChhHHHHHHHHHHHh
Q 015435          378 SDG------RISMA-GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       378 ~gg------Ris~~-~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ++|      |+... .++++|++.+++++.+++++
T Consensus       426 ~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~  460 (464)
T PRK06938        426 LGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAA  460 (464)
T ss_pred             ecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence            643      56433 25889999999999999875

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.79  E-value=7.8e-17  Score=149.78  Aligned_cols=350  Identities=12%  Similarity=0.075  Sum_probs=217.9

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc--ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV--KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++.+||-.+|.++.+-| ...+++.+++.+++. .-...  ..+...+ ..+|.+++++... ..+    -++|++ 
T Consensus        40 d~~G~r~lDg~sg~W~~~~G-h~~~~i~~Ai~~Q~~-~l~~~~~~~~t~~P-a~~LA~~L~~~aP-~~~----l~~vFf-  110 (449)
T COG0161          40 DIDGRRYLDGMSGLWCVNHG-HGRPEIAEAIKKQLD-KLPHVMFGGFTHEP-AIELAEKLAELAP-EGG----LDHVFF-  110 (449)
T ss_pred             eCCCCEEEecccHHHHhhcC-cCCHHHHHHHHHHHH-hCCchhhcccCCch-HHHHHHHHHHhCC-CCC----ccEEEE-
Confidence            45689999999999988888 778888888888886 21111  1122222 5667777777662 111    289999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----CCC-eEEecCCCCCChHHHHh-hcC-------------ceeeEEEeecC--CC--
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----HQL-TIYIPQPTWGNHPKVFT-LAG-------------LSVKTYRYYDP--AT--  160 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~gd-~Vi~~~p~y~~~~~~~~-~~G-------------~~~~~v~~~~~--~~--  160 (407)
                       ++||++|++.++++.....     +.. ++|.-..+|++-.-... ..|             ..+..+|....  .+  
T Consensus       111 -~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~  189 (449)
T COG0161         111 -TDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFF  189 (449)
T ss_pred             -eCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCC
Confidence             9999999999998876543     223 37777778864322211 111             11222222111  00  


Q ss_pred             --CC----cChhhHHHHHHcC-CCCcEEEEecCCCCC-CCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          161 --RG----LNFQGLLEDLRAA-PSGAIVLLHACAHNP-TGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       161 --~~----~d~~~l~~~i~~~-~~~~~v~i~~~p~NP-tG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                        +.    -..++|++.+.+. +.+.+.+|.-.-... +|+. +++..|+++.++|++||+++|+||+-.+|+..|   .
T Consensus       190 ~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG---~  266 (449)
T COG0161         190 GEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTG---K  266 (449)
T ss_pred             CCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCc---h
Confidence              11    2256777777654 355555553333334 6765 788899999999999999999999999999876   2


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHH-HhhhhhcccCCCChhHHHHHHHHhcChhh
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQ-LKLVIRPMYSSPPIHGASIVATILKDSTM  310 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (407)
                      ......+.- ..++++   ++|.++..-+++|.+  ++. +++.+.+.+. ...+....+++.+++++.++++.|+-.. 
T Consensus       267 ~FA~e~~gi-~PDi~~---~aKGLT~GY~Pl~a~--l~~-~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e-  338 (449)
T COG0161         267 MFACEHAGI-VPDILC---LAKGLTGGYLPLSAV--LTS-DRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILE-  338 (449)
T ss_pred             hhhhhhcCC-CCCeee---ecccccccchhhHhH--hhh-HHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHH-
Confidence            333333221 233443   689887555788888  455 5555555443 2333444566888888888877665221 


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcccccCCceeEEecCC----C---------HHHHHHhHhhccEEE
Q 015435          311 YKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWSHIIKQIGMFTFTGL----N---------SEQVAFMTKEYHIYM  376 (407)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~----~---------~~~~~~~l~~~gi~~  376 (407)
                             -+.+.++.++...++.+.|++ +...-.+--+. .-|++.-+.+    .         ...+.....++|+.+
T Consensus       339 -------~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR-~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~i  410 (449)
T COG0161         339 -------EEDLLERVAEIGAYLQAGLQAALADHPLVGDVR-GLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLI  410 (449)
T ss_pred             -------hcCHHHHHHHHHHHHHHHHHHhcccCCcEEEee-ccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEE
Confidence                   234556677788888888876 32100011122 2333333322    2         234556666799999


Q ss_pred             cCCC-eEEecC---CCCCChhHHHHHHHHHHHh
Q 015435          377 TSDG-RISMAG---LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       377 ~~gg-Ris~~~---~~~e~i~~~~~~l~~~l~~  405 (407)
                      +|.| -+.++.   ++++|++++++++++.+++
T Consensus       411 Rp~g~~i~~~PPliit~~eid~l~~~l~~al~~  443 (449)
T COG0161         411 RPLGDVIYLMPPLIITREEIDELVDALREALDE  443 (449)
T ss_pred             eecCCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence            9998 444432   5889999999999999875

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.78  E-value=2.1e-16  Score=152.69  Aligned_cols=353  Identities=10%  Similarity=0.038  Sum_probs=202.3

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc--ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV--KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ..+++.+||+..|....+.| ..++++++++.+++. .-...  ..+ +..-..++.+.+++......+ .-.-+.+++ 
T Consensus        60 D~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~q~~-~l~~~~~~~~-~~~~~~~lae~L~~~~p~~~~-~~~~~~v~f-  134 (472)
T PRK08742         60 GHDGRRYLDAVSSWWTNLFG-HAEPRIGAAIAAQAG-ELEQVMLAGF-THEPAVQLAEQLLAIAPRQDG-RAPLSKVFY-  134 (472)
T ss_pred             eCCCCEEEEcCccHHhccCC-CCCHHHHHHHHHHHH-hCCCcccccc-CCHHHHHHHHHHHHhCCCccc-CCCCCEEEE-
Confidence            45678999999997655567 567778888877775 11111  112 112234455555554421100 001258999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----C-CCeEEecCCCCCChHHHHhhcCc-------------eeeEEEeecCC--CCCc
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----H-QLTIYIPQPTWGNHPKVFTLAGL-------------SVKTYRYYDPA--TRGL  163 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~-gd~Vi~~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~--~~~~  163 (407)
                       +++|++|++.++++.+.+.     + ..+|+...-+|++........+.             ++..+|..+..  ..+.
T Consensus       135 -~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~  213 (472)
T PRK08742        135 -ADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQ  213 (472)
T ss_pred             -eCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCC
Confidence             9999999999998887652     2 35788888888877543332211             12223321100  0011


Q ss_pred             --------ChhhHHHHHHcCCCC-cEEEEecC-CCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          164 --------NFQGLLEDLRAAPSG-AIVLLHAC-AHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       164 --------d~~~l~~~i~~~~~~-~~v~i~~~-p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                              +++.+++.+...+.. .++++ -. .+.-.|. ..+++.++++.++|++||+++|+||+..+|+..+   ..
T Consensus       214 ~~~~~~~~~~~~l~~~~~~~~~~iAAvI~-EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG---~~  289 (472)
T PRK08742        214 SAEDYALQAADALQALFEQSPGEICALIL-EPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTG---TL  289 (472)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCceEEEEE-ccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---cc
Confidence                    246666777533333 44444 32 2455566 4789999999999999999999999999998764   34


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHH--hhhhhcccCCCChhHHHHHHHHhcChh
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQL--KLVIRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                      +....+. -..++++   ++|.++ .| +++|.+  +++ +++.+.+....  ..+....+++.+++++.++.+.|+-..
T Consensus       290 ~a~e~~g-v~PDiv~---~gKgl~-gG~~Plaav--~~~-~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~  361 (472)
T PRK08742        290 FACEQAG-VMPDLLC---LSKGLT-GGFLPLSAV--LAT-QQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFA  361 (472)
T ss_pred             hHHHhcC-CCCCEEE---Eccccc-CCCCCccee--ecc-HHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHH
Confidence            4443332 1233443   689998 67 489998  454 44433322110  011122345678888888887776321


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcccccCCceeEEe--cC-C------CH-----HHHHHhHhhccE
Q 015435          310 MYKEWTLELKAMADRIISMRQQLFDALSARG-TPGDWSHIIKQIGMFTF--TG-L------NS-----EQVAFMTKEYHI  374 (407)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~--~~-~------~~-----~~~~~~l~~~gi  374 (407)
                            +  +.+.++.+++.+++.+.++... .+ .+.-+...|.++.+  .. -      ..     ..+.+.+.++||
T Consensus       362 ------~--~~l~~~~~~~g~~l~~~~~~~~~~~-~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl  432 (472)
T PRK08742        362 ------D--DDVIARNQPTAARMTQLAAQIGEHP-HVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGV  432 (472)
T ss_pred             ------H--CCHHHHHHHHHHHHHHHHHHHhcCC-CeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCe
Confidence                  1  1233444444445544443321 11 12223334444332  11 0      10     123344456899


Q ss_pred             EEcCCC---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          375 YMTSDG---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       375 ~~~~gg---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+.+.|   ||...- +++++++.++++|.++++++
T Consensus       433 l~~~~g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~  468 (472)
T PRK08742        433 VLRPLGDVLYWMPPYCVDEAQLALLADTTRHAIDEA  468 (472)
T ss_pred             EEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999876   665432 58899999999999999763

>PRK07481 hypothetical protein; Provisional

Probab=99.78  E-value=1.4e-16  Score=153.59  Aligned_cols=347  Identities=12%  Similarity=0.093  Sum_probs=202.9

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ..+++++||+..|....+.| ..++++++++.+++. .......+  .......++.+.+++.+ +..    ..+.+++ 
T Consensus        38 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~-~~~~~~~~~~~~~~~~~~lae~L~~~~-~~~----~~~~v~f-  109 (449)
T PRK07481         38 DIDGKKLLDGVGGLWNVNVG-HNREEVKEAIVRQLD-ELEYYSTFDGTTHPRAIELSYELIDMF-APE----GMRRVFF-  109 (449)
T ss_pred             eCCCCEEEECchhHHhhcCC-CCCHHHHHHHHHHHH-hccceecccccCCHHHHHHHHHHHHhc-CCC----CCCEEEE-
Confidence            45678999999887655667 667788888888876 11111111  12222344555555543 111    1268999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHHhhcC-------------ceeeEEEeecCCC--CC-
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVFTLAG-------------LSVKTYRYYDPAT--RG-  162 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~~~~G-------------~~~~~v~~~~~~~--~~-  162 (407)
                       ++||++|++.++++.+...     +| .+|+...-+|++........+             ..+..++..+...  +. 
T Consensus       110 -~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  188 (449)
T PRK07481        110 -SSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTE  188 (449)
T ss_pred             -cCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCC
Confidence             9999999999998887653     23 468888888887654322211             1122222210000  11 


Q ss_pred             cChhhH--------HHHHH-cC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          163 LNFQGL--------LEDLR-AA-PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       163 ~d~~~l--------~~~i~-~~-~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      .|++.+        ++.+. .. .+..++++- ..+.-.|.. ++.+.++++.++|++||+++|+||+..+|+..+   .
T Consensus       189 ~d~~~~~~~~~~~le~~i~~~~~~~iAAviiE-Pvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG---~  264 (449)
T PRK07481        189 QDPEELARICARLLEREIAFQGPDTIAAFIAE-PVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG---S  264 (449)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe-cccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCc---h
Confidence            133333        33332 12 234555553 334444664 678899999999999999999999999997654   2


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhh-------hhhcccCCCChhHHHHHHH
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKL-------VIRPMYSSPPIHGASIVAT  303 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  303 (407)
                      .+....+.- ..++++   ++|.++ .| +++|.+  +++ ++    +.+.+..       +....+.+.+++++.++.+
T Consensus       265 ~~a~~~~gv-~PDiv~---~gKgl~-gG~~Pi~av--~~~-~~----i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a  332 (449)
T PRK07481        265 WFGSRGWGV-KPDIMC---LAKGIT-SGYVPLGAT--MVN-AR----IADAFEANADFGGAIMHGYTYSGHPVACAAALA  332 (449)
T ss_pred             hhHhhhcCC-CCCEEE---Eeeccc-CCCcCceEE--EEc-HH----HHHHHhccCccccccccCCCCCCCHHHHHHHHH
Confidence            333332211 223333   689988 57 589998  565 33    4443321       1122345678888888887


Q ss_pred             HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcccccCCceeEEe--c-CC------C--H---HHHHHh
Q 015435          304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG-DWSHIIKQIGMFTF--T-GL------N--S---EQVAFM  368 (407)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~--~-~~------~--~---~~~~~~  368 (407)
                      .|+-..        -+...++.+++.+++.+.|+++-... .+..+...|.++.+  . +-      +  .   ..+...
T Consensus       333 ~L~~l~--------~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~  404 (449)
T PRK07481        333 TLDIVV--------REDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADV  404 (449)
T ss_pred             HHHHHH--------hhhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHH
Confidence            776321        12344566666777777776642100 01222333443322  1 10      1  1   223344


Q ss_pred             HhhccEEEcCCC---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          369 TKEYHIYMTSDG---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       369 l~~~gi~~~~gg---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.++|+.+.+.|   ||+... ++++|++.+++++.++++++
T Consensus       405 ~~~~Gvl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  446 (449)
T PRK07481        405 ARENGVLVRPSGTKIILSPPLVIQREDVDRIVDALDAGLSAV  446 (449)
T ss_pred             HHhCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            556899998876   776442 48899999999999999764

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.78  E-value=1.6e-16  Score=151.95  Aligned_cols=155  Identities=17%  Similarity=0.188  Sum_probs=121.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCceee
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGLSVK  151 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~~~  151 (407)
                      ...++++.++++. +.       +..++  |+|||+|+.+++  ...+.+||+|+++...|......+    ...|++++
T Consensus        65 ~~~~le~~lA~l~-g~-------~~av~--~sSGt~Al~~al--~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~  132 (433)
T PRK08134         65 TVAVLEERVAALE-GG-------VGAIA--TASGQAALHLAI--ATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETT  132 (433)
T ss_pred             HHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEE
Confidence            4788899999988 43       45788  999999999984  444789999999999998765544    45899998


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      .++..       |++++++.++  +++++|++ .+|+||||.+.+   +++|+++|+++|+++|+|.++......    .
T Consensus       133 ~vd~~-------d~~~l~~~i~--~~TklV~~-e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~~----~  195 (433)
T PRK08134        133 FVKPG-------DIDGWRAAIR--PNTRLLFG-ETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYLL----R  195 (433)
T ss_pred             EECCC-------CHHHHHHhcC--CCCeEEEE-ECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCcccccC----C
Confidence            88651       7899999998  67888877 789999999764   888888899999999999997533321    0


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                        +   +  .....+++.|.+|.++.+|..+|.++
T Consensus       196 --p---l--~~GaD~vv~S~tK~l~g~g~~~gG~v  223 (433)
T PRK08134        196 --P---F--EHGADLVYHSATKFLGGHGTAIGGVL  223 (433)
T ss_pred             --c---h--hcCCCEEEeccccccCCCCCceEEEE
Confidence              1   1  12346889999999998887787773

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.78  E-value=1.8e-16  Score=148.23  Aligned_cols=302  Identities=13%  Similarity=0.107  Sum_probs=188.9

Q ss_pred             cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCC-ChHHHHhhcCc
Q 015435           70 EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWG-NHPKVFTLAGL  148 (407)
Q Consensus        70 ~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~-~~~~~~~~~G~  148 (407)
                      .|.......+|.+++++++ +.       ++++.  |++||.|+.++.  ...+++||.|  +.++|. .....++..|+
T Consensus        66 ~yag~~s~~~lE~~va~~~-G~-------~~av~--v~sGT~Al~ll~--~l~l~pGDeV--psn~~f~Tt~ahIe~~Ga  131 (450)
T TIGR02618        66 AYAGSRNFYHLERTVRELY-GF-------KYVVP--THQGRGAENLLS--QIAIKPGDYV--PGNMYFTTTRYHQEKNGA  131 (450)
T ss_pred             hhcCCCcHHHHHHHHHHHH-CC-------CeEEE--cCCHHHHHHHHH--HhCCCCcCEE--CCceeHHHHHHHHHhCCe
Confidence            4888888999999999988 65       68988  999999999873  4447799977  667664 44445788998


Q ss_pred             eeeEEEee--------cCCCCCcChhhHHHHHHcC--CCCcEEEEecCCCC-CCCCCCCHHHHHHHHHHHHHcCceeeec
Q 015435          149 SVKTYRYY--------DPATRGLNFQGLLEDLRAA--PSGAIVLLHACAHN-PTGVDPTLEQWEQIRQLMRSKGLLPFFD  217 (407)
Q Consensus       149 ~~~~v~~~--------~~~~~~~d~~~l~~~i~~~--~~~~~v~i~~~p~N-PtG~~~~~~~l~~i~~~~~~~~~~li~D  217 (407)
                      .++.++.+        ++..+.+|++++++.+++.  ++.+++.+ .+++| ..|.++|.++++++.++|++||+.||+|
T Consensus       132 v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~-e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~D  210 (450)
T TIGR02618       132 TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICL-AVTVNLAGGQPVSMANMREVRELCEAHGIKVFYD  210 (450)
T ss_pred             EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEE-EEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEE
Confidence            77666442        2445788999999999842  13445556 44556 5689999999999999999999999999


Q ss_pred             ccccc-ccCC----CCCchhHHH----HHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhc
Q 015435          218 SAYQG-FASG----SLDADAQSV----RMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRP  288 (407)
Q Consensus       218 ~~y~~-~~~~----~~~~~~~~~----~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~  288 (407)
                      .+... -.+-    .......++    ..+....|  .+..|..|..+.+   +|.++ +++|+++.+++.......-..
T Consensus       211 aAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD--~~~~S~~Kd~~~~---~GG~l-~~~d~~l~~k~r~~~~~~eG~  284 (450)
T TIGR02618       211 ATRCVENAYFIKEREQGYEDKSIAEILKEMMSYAD--GCTMSGKKDCLVN---IGGFL-CMNDDEMFQSAKELVVVFEGM  284 (450)
T ss_pred             ccchhhChhhhhcccccccCCCHHHHHHHHhccCc--EEEEeeccCCCCC---CceEE-EeCCHHHHHHHHHHhhhcCCc
Confidence            99643 1110    000011122    22222233  3778888886544   44442 458887777655532222110


Q ss_pred             ccC-CCChhHHHHHHHHhcChhhHHhHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC------
Q 015435          289 MYS-SPPIHGASIVATILKDSTMYKEWTLELK-AMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL------  360 (407)
Q Consensus       289 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------  360 (407)
                      ... ....-.+.+++..|...         .+ ...++-..+.++|.+.|.+.|    +.+..|.+|--++++.      
T Consensus       285 ~tyGgla~r~~~ala~gL~e~---------~~~~y~~~r~~~a~~La~~L~~~G----vpv~~p~ggh~V~vda~~~lph  351 (450)
T TIGR02618       285 PSYGGLAGRDMEAMAIGIREA---------VDYEYIEHRVKQVRYLGDKLKAAG----VPIVEPVGGHAVFLDARRFLPH  351 (450)
T ss_pred             cccCchhhhhHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHCC----CcccCCCCcceEEEEhHHhCCC
Confidence            011 11222223333233321         11 222333346788999999888    5555666665565522      


Q ss_pred             ------CHH-HHHHhHhhccEEEcCC-----------C----------eEEecC--CCCCChhHHHHHHHHHHHh
Q 015435          361 ------NSE-QVAFMTKEYHIYMTSD-----------G----------RISMAG--LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       361 ------~~~-~~~~~l~~~gi~~~~g-----------g----------Ris~~~--~~~e~i~~~~~~l~~~l~~  405 (407)
                            ... .+.++-.+.||...--           |          |+++..  .|.+.++...++|..+.++
T Consensus       352 ~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~  426 (450)
T TIGR02618       352 IPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH  426 (450)
T ss_pred             CChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence                  222 2345545567744221           1          887764  3668899999999888754

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.78  E-value=1.7e-16  Score=152.00  Aligned_cols=341  Identities=16%  Similarity=0.141  Sum_probs=192.8

Q ss_pred             CCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCC----CCCcHHHHH----HHH
Q 015435           14 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLP----IVGLVDFNK----LSA   85 (407)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~----~~g~~~l~~----~~a   85 (407)
                      ....|++..+.-... ..+.|+|-.+.    |  ..++.+.++....+.+.......++.    ...+.++.+    .++
T Consensus        12 ~~~~~~~~~~~~~~~-~~~~~~l~~se----n--~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la   84 (416)
T PRK13034         12 YDDEVFAAINKELER-QQDHLELIASE----N--FTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAK   84 (416)
T ss_pred             hCHHHHHHHHHHHHH-HhcCeeecccc----c--CCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHH
Confidence            334556665422211 24666766443    2  44556666665554211111111111    233556666    788


Q ss_pred             HHHhCCCCCCCCCCce-EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCCh-HHHHhh--cCcee--eEEEeecCC
Q 015435           86 KLILGADSPAIKDNRV-TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNH-PKVFTL--AGLSV--KTYRYYDPA  159 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~i-~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~-~~~~~~--~G~~~--~~v~~~~~~  159 (407)
                      +++ +.       +.. ++  ++||+.|+..++  ...+.+||+|+++..+|.+. ...++.  .+...  +.++. ++.
T Consensus        85 ~l~-g~-------~~alv~--~~SG~~A~~~~l--~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~  151 (416)
T PRK13034         85 QLF-GC-------DYANVQ--PHSGSQANGAVY--LALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGV-DRL  151 (416)
T ss_pred             HHh-CC-------CceEEe--cCCcHHHHHHHH--HHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEccc-ccc
Confidence            877 53       344 44  689999999984  55588999999999988763 222221  12222  24444 234


Q ss_pred             CCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH
Q 015435          160 TRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV  239 (407)
Q Consensus       160 ~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~  239 (407)
                      ++.+|++++++.+.. .++++|++ ..+.  +|.   ..++.+|.++|++||++||+|++++.......   . .   ..
T Consensus       152 ~~~~d~~~le~~l~~-~~~klVi~-~~~~--~g~---~~dl~~l~~la~~~g~~livD~Aha~G~~~~g---~-~---~~  217 (416)
T PRK13034        152 TGLIDYDEVEELAKE-HKPKLIIA-GFSA--YPR---ELDFARFREIADEVGALLMVDMAHIAGLVAAG---E-H---PN  217 (416)
T ss_pred             cCCcCHHHHHHHHhh-cCCeEEEE-CCCc--ccc---ccCHHHHHHHHHHcCCEEEEeCcccccCcccC---C-C---CC
Confidence            567899999998863 23455544 3433  455   44788888889999999999999764443210   0 0   01


Q ss_pred             HcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcc-cCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435          240 ADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPM-YSSPPIHGASIVATILKDSTMYKEWTLEL  318 (407)
Q Consensus       240 ~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  318 (407)
                      ......++++|++|.++.+  .-|++  ++.+++..++    ++...... ..++.+....++...+...     .....
T Consensus       218 ~~~~~Di~~~s~~K~l~g~--~GG~v--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~aa~~~al~~~-----~~~~~  284 (416)
T PRK13034        218 PFPHAHVVTTTTHKTLRGP--RGGMI--LTNDEEIAKK----INSAVFPGLQGGPLMHVIAAKAVAFGEA-----LQPEF  284 (416)
T ss_pred             CCCCceEEEEeCcccCCCC--CCeEE--EECcHHHHHH----HHhhcCCcccCCccHHHHHHHHHHHHHH-----hChhH
Confidence            1123568899999998423  23666  4655443332    22222111 1122222222222112111     00123


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCccccc--CCceeEEe-c---CCCHHHHHHhHhhccEEEcC----C---------
Q 015435          319 KAMADRIISMRQQLFDALSARGTPGDWSHII--KQIGMFTF-T---GLNSEQVAFMTKEYHIYMTS----D---------  379 (407)
Q Consensus       319 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~-~---~~~~~~~~~~l~~~gi~~~~----g---------  379 (407)
                      .+.++++.++.++|.+.|.+.|    +....  +......+ +   +.+...+.+.|++.||.+.+    +         
T Consensus       285 ~~~~~~l~~~a~~l~~~L~~~G----~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~  360 (416)
T PRK13034        285 KTYAKQVIANAQALAEVLKERG----YDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTS  360 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC----CEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCC
Confidence            3567889999999999998887    44432  22222222 2   22556666777888998864    1         


Q ss_pred             C-eEEec-----CCCCCChhHHHHHHHHHHHh
Q 015435          380 G-RISMA-----GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       380 g-Ris~~-----~~~~e~i~~~~~~l~~~l~~  405 (407)
                      + |+++.     +++++|++++++.|++++.+
T Consensus       361 ~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~  392 (416)
T PRK13034        361 GIRIGTPAGTTRGFGEAEFREIANWILDVLDD  392 (416)
T ss_pred             eeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence            2 77643     24679999999999988763

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.77  E-value=2.8e-16  Score=150.06  Aligned_cols=285  Identities=15%  Similarity=0.137  Sum_probs=179.3

Q ss_pred             CCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----Hh
Q 015435           71 YLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FT  144 (407)
Q Consensus        71 y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~  144 (407)
                      |+.  ......|++.++++. +.       +..++  +++|+.|+.+++  ...+.+||+|+++...|.+....    +.
T Consensus        63 Ysr~~~p~~~~Le~~lA~l~-g~-------~~av~--~sSG~aAi~~al--~all~~Gd~Vv~~~~~y~~t~~~~~~~l~  130 (436)
T PRK07812         63 YTRIMNPTQDVVEQRIAALE-GG-------VAALL--LASGQAAETFAI--LNLAGAGDHIVSSPRLYGGTYNLFHYTLP  130 (436)
T ss_pred             ccCCCCchHHHHHHHHHHHh-CC-------CeEEE--EccHHHHHHHHH--HHHhCCCCEEEEeCCcchHHHHHHHHHhh
Confidence            554  234678888888877 43       55777  889999999884  55688999999999888776543    34


Q ss_pred             hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccccc
Q 015435          145 LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFA  224 (407)
Q Consensus       145 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~  224 (407)
                      ..|++++.++  +.    .|+++++++++  +++++|++ .+|+||+|.+.   ++++|+++|+++|+++|+|+++....
T Consensus       131 ~~Gi~v~~vd--d~----~d~e~l~~ai~--~~tklV~i-e~~sNp~G~v~---Dl~~I~~la~~~gi~liVD~t~a~~~  198 (436)
T PRK07812        131 KLGIEVSFVE--DP----DDLDAWRAAVR--PNTKAFFA-ETISNPQIDVL---DIPGVAEVAHEAGVPLIVDNTIATPY  198 (436)
T ss_pred             cCeEEEEEEC--CC----CCHHHHHHhCC--CCCeEEEE-ECCCCCCCeec---CHHHHHHHHHHcCCEEEEECCCcccc
Confidence            5788877774  12    38899999887  66777777 89999999966   47888888999999999999875322


Q ss_pred             CCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhh--------------------------HHHH
Q 015435          225 SGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV--------------------------ASRV  278 (407)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~--------------------------~~~~  278 (407)
                      ..    .  +   + . ....+++.|++|.++..|--+|+++  +.+..+                          .+.+
T Consensus       199 ~~----~--p---l-~-~GaDivv~S~tK~lgg~G~~i~G~v--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (436)
T PRK07812        199 LI----R--P---L-E-HGADIVVHSATKYLGGHGTAIAGVI--VDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAY  265 (436)
T ss_pred             cC----C--c---h-h-cCCCEEEEecccccCCCCCeEEEEE--EcCCccccccccccccccCCcccccchhhhcchhHH
Confidence            11    0  1   1 1 2334667999999988877777773  432210                          0000


Q ss_pred             H-HHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Ccc
Q 015435          279 E-SQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWS  346 (407)
Q Consensus       279 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~  346 (407)
                      . +......+......++.....+..-++          .+..+.++..++...+.+.|++.+.      |.     .+.
T Consensus       266 ~~~~~~~~~~~~G~~l~p~~a~l~~rgl~----------tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~  335 (436)
T PRK07812        266 ALKARVQLLRDLGSAISPFNAFLIAQGLE----------TLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYE  335 (436)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHhcCcC----------cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHH
Confidence            0 111111122222344443443333333          3556667778888899999987642      10     000


Q ss_pred             c----c-cCCceeEEec-CCCHHHHHHhHhhccEEEc-C--C-------------------------C------eEEecC
Q 015435          347 H----I-IKQIGMFTFT-GLNSEQVAFMTKEYHIYMT-S--D-------------------------G------RISMAG  386 (407)
Q Consensus       347 ~----~-~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~-~--g-------------------------g------Ris~~~  386 (407)
                      .    . ...||++.|. .-+.+.+.+++++-.+.-. +  |                         |      |||++-
T Consensus       336 ~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSvGl  415 (436)
T PRK07812        336 RAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGI  415 (436)
T ss_pred             HHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc
Confidence            0    0 1235666654 2234445555554333221 1  1                         1      888873


Q ss_pred             CCCCChhHHHHHHHHHHHh
Q 015435          387 LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~~  405 (407)
                         |+.+.+++-|.++|+.
T Consensus       416 ---Ed~~dli~dl~~Al~~  431 (436)
T PRK07812        416 ---EGIDDILADLEAGFAA  431 (436)
T ss_pred             ---CCHHHHHHHHHHHHHh
Confidence               8899999999998875

>PRK07480 putative aminotransferase; Validated

Probab=99.77  E-value=1.3e-16  Score=153.98  Aligned_cols=350  Identities=13%  Similarity=0.050  Sum_probs=200.0

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++++||+..|....+.| ...+.+++++.+++. .......+  .......++.+++++.. ..     ..+.+++ 
T Consensus        46 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~-~~~~~~~~~~~~~~~~~~lae~L~~~~-p~-----~~~~v~f-  116 (456)
T PRK07480         46 DSEGNKILDGMAGLWCVNVG-YGRKELADAAARQMR-ELPYYNTFFKTTHPPAIELAAKLAEVA-PP-----GFNHVFF-  116 (456)
T ss_pred             eCCCCEEEEccchHHHhcCC-CCCHHHHHHHHHHHH-hcCCcccccccCCHHHHHHHHHHHHhC-CC-----CcCEEEE-
Confidence            45678999999886555566 667788888888876 11111111  12233445555565554 21     1268999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHHhhc-Cc------------eeeEEEeecCC--CCCc
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVFTLA-GL------------SVKTYRYYDPA--TRGL  163 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~--~~~~  163 (407)
                       ++||++|++.++++.+...     +| .+|+...-+|++........ |.            .+..++.....  ....
T Consensus       117 -~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  195 (456)
T PRK07480        117 -TNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDM  195 (456)
T ss_pred             -eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCC
Confidence             9999999999998887652     23 46888888887754322111 11            11112210000  0001


Q ss_pred             C--------hhhHHHHHHc-C-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          164 N--------FQGLLEDLRA-A-PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       164 d--------~~~l~~~i~~-~-~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      +        ++.+++.+.+ . .+..++++-+ .+.-.|.. .+.+.+++|.++|++||+++|+||++.+|+..+   ..
T Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EP-iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~  271 (456)
T PRK07480        196 TPEEFGLAAARQLEAKILELGADNVAAFIGEP-IQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG---EW  271 (456)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCcEEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---ch
Confidence            1        2555555532 2 2344555533 34335664 678889999999999999999999999997654   23


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhH
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMY  311 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  311 (407)
                      +....+.- ..+++   +++|.++ .|. ++|.+  ++. +++.+.+...-..+....+++.+++++.++.+.|+-..  
T Consensus       272 ~a~~~~gv-~PDiv---~~gK~l~-gG~~Pi~av--~~~-~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~--  341 (456)
T PRK07480        272 FGSQHFGI-KPDLM---TIAKGLT-SGYIPMGAV--GVG-DRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILR--  341 (456)
T ss_pred             hhhhhcCC-CCCee---eeehhhc-cCCccceEE--EEc-HHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHH--
Confidence            33333221 22232   4799998 574 88998  454 44433331100112233456788888988888876321  


Q ss_pred             HhHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCcccccCCceeEEec--CC--------C----HHHHHHhHhhccEEE
Q 015435          312 KEWTLELKAMADRI-ISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT--GL--------N----SEQVAFMTKEYHIYM  376 (407)
Q Consensus       312 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~--------~----~~~~~~~l~~~gi~~  376 (407)
                          +  +...++. +++.++|.+.|+++.....+..+...|.++.+-  .-        +    ...+...+.++||.+
T Consensus       342 ----~--~~l~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~  415 (456)
T PRK07480        342 ----D--EGIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIM  415 (456)
T ss_pred             ----h--CCHHHHHHHHHHHHHHHHHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEE
Confidence                1  1333455 355566666665532100012223334433321  10        1    123444455689999


Q ss_pred             cCCC---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          377 TSDG---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       377 ~~gg---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+.|   ||+... ++++++++++++|.++++++
T Consensus       416 ~~~~~~l~~~Ppl~it~~eid~~~~~l~~al~~~  449 (456)
T PRK07480        416 RAVGDRMIISPPLVITHAEIDELVEKARKALDAT  449 (456)
T ss_pred             eecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            8765   666543 48899999999999988653

>PRK12403 putative aminotransferase; Provisional

Probab=99.77  E-value=1.9e-16  Score=153.13  Aligned_cols=350  Identities=16%  Similarity=0.098  Sum_probs=195.9

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++++||+..|....+.| ..++.+++++.+++. .......+  .......++.+++++.+.+.      .+.+++ 
T Consensus        50 D~dG~~ylD~~~g~~~~~lG-h~hp~v~~A~~~q~~-~~~~~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f-  120 (460)
T PRK12403         50 DNDGKRYLDGMSGLWCTNLG-YGRKDLAAAAARQME-QLPYYNMFFHTTHPAVIELSELLFSLLPGH------YSHAIY-  120 (460)
T ss_pred             eCCCCEEEECchhHHhhcCC-CCCHHHHHHHHHHHH-hCCCeecccccCCHHHHHHHHHHHHhCCCC------cCEEEE-
Confidence            44678999999887656677 567788888888886 11111111  11223445666666655211      168999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----CCCe-EEecCCCCCChHH-HHhhcCce-----------eeEEEeecC--CCCCc-
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----HQLT-IYIPQPTWGNHPK-VFTLAGLS-----------VKTYRYYDP--ATRGL-  163 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~gd~-Vi~~~p~y~~~~~-~~~~~G~~-----------~~~v~~~~~--~~~~~-  163 (407)
                       +++|++|++.++++.+...     +++. |+...-+|++... .+...|.+           +..+|....  ..+.. 
T Consensus       121 -~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  199 (460)
T PRK12403        121 -TNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELT  199 (460)
T ss_pred             -eCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCC
Confidence             9999999999998887651     3344 4455566766533 22222211           222321100  00011 


Q ss_pred             -------ChhhHHHHHHc-CCC-CcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435          164 -------NFQGLLEDLRA-APS-GAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ  233 (407)
Q Consensus       164 -------d~~~l~~~i~~-~~~-~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~  233 (407)
                             +.+.+++.+.+ .+. ..++++ -....-.|.+ .+++.+++|.++|++||+++|+||+..+|+..+   ..+
T Consensus       200 ~~~~~~~~~~~le~~~~~~~~~~iaavI~-Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG---~~~  275 (460)
T PRK12403        200 PAEFGRRAALQLEEKILELGAENVAGFVA-EPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTG---EWF  275 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCceEEEEE-ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---hhh
Confidence                   12456555532 222 344455 3333334654 678899999999999999999999998887664   233


Q ss_pred             HHHHHHHcCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHH
Q 015435          234 SVRMFVADGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYK  312 (407)
Q Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  312 (407)
                      ....+.- ..+++   .++|.++ .|. .+|.+  ++. +++.+.+...-..+....+.+.+++++.++.+.|+-..   
T Consensus       276 a~e~~gv-~PDiv---~~gK~lg-gG~~Piga~--v~~-~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~---  344 (460)
T PRK12403        276 AHEHFGF-EPDTL---SIAKGLT-SGYVPMGGL--VLS-KRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALR---  344 (460)
T ss_pred             hhhhcCC-CCCeE---EEccccc-ccccceEEE--EEC-HHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHH---
Confidence            3333221 22333   3899998 574 89988  565 44333322110111122344678888888888776321   


Q ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCC-CcccccCCceeEEe--cC-------CCH--H---HHHHhHhhccEEE
Q 015435          313 EWTLELKAMADRII-SMRQQLFDALSARGTPG-DWSHIIKQIGMFTF--TG-------LNS--E---QVAFMTKEYHIYM  376 (407)
Q Consensus       313 ~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~--~~-------~~~--~---~~~~~l~~~gi~~  376 (407)
                         +  +...++++ ++.+++.+.|+++-... .+.-+...|.++.+  ..       ...  +   .+...+.++|+.+
T Consensus       345 ---~--~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~  419 (460)
T PRK12403        345 ---D--EGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVII  419 (460)
T ss_pred             ---h--ccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEE
Confidence               1  12344553 55666666665431100 02223333433322  11       011  1   1223345589999


Q ss_pred             cCCC---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          377 TSDG---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       377 ~~gg---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+.+   |++... +++++++++++.+.++++++
T Consensus       420 ~~~~~~~~l~Ppl~it~~eid~~~~~l~~al~~~  453 (460)
T PRK12403        420 RSTLGRMIMAPALVAGRAEIDELVDKTRIAVDRT  453 (460)
T ss_pred             EecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            8754   555442 48899999999999998653

>TIGR01814 kynureninase kynureninase

Probab=99.77  E-value=2.6e-16  Score=150.96  Aligned_cols=276  Identities=16%  Similarity=0.111  Sum_probs=170.8

Q ss_pred             CCCceEEeecCCcccHHHHHHHHHHhhcCC---CeEEecCCCCCChHH----HHhhcCcee----eEEEeecCCCCCcCh
Q 015435           97 KDNRVTTVQCLSGTGSLRVGAEFLARHYHQ---LTIYIPQPTWGNHPK----VFTLAGLSV----KTYRYYDPATRGLNF  165 (407)
Q Consensus        97 ~~~~i~~~~t~g~t~a~~~~~~~~~~~~~g---d~Vi~~~p~y~~~~~----~~~~~G~~~----~~v~~~~~~~~~~d~  165 (407)
                      ++++|++  |+|+|+++..++..  .+.++   +.|++....|+....    .++..|.++    +.++.  +..+.+++
T Consensus        85 ~~~~v~~--~~~~t~~l~~~~~~--~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~--~~~g~~~~  158 (406)
T TIGR01814        85 KEDEVVV--MNTLTINLHLLLAS--FYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP--REEETLRL  158 (406)
T ss_pred             CCCcEEE--eCCchHHHHHHHHH--hcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc--CCCCccCH
Confidence            4689999  99999999998433  24443   357887889987433    335668877    34544  33456789


Q ss_pred             hhHHHHHHcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          166 QGLLEDLRAA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       166 ~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      +++++.+... ++++++++ ++++|.||.+.+   +++|+++|+++|+++++|++.+.... +.     .+    ...+.
T Consensus       159 ~~l~~~~~~~~~~t~lv~~-~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~G~~-~i-----d~----~~~gv  224 (406)
T TIGR01814       159 EDILDTIEKNGDDIAVILL-SGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAVGNV-PL-----DL----HDWGV  224 (406)
T ss_pred             HHHHHHHHhcCCCeEEEEE-eccccccceecC---HHHHHHHHHHcCCEEEEEcccccCCc-cc-----cc----ccCCC
Confidence            9998887532 45666666 889999999775   88888889999999999998653221 11     11    12245


Q ss_pred             EEEEEecCcccc-ccCCCcceeEEeecChhhHHHHHHHHhhh-------------------hhcccCCCChhHHHHHHHH
Q 015435          245 CLVAQSYAKNMG-LYGERVGALSIVCKTEDVASRVESQLKLV-------------------IRPMYSSPPIHGASIVATI  304 (407)
Q Consensus       245 ~i~~~s~sK~~~-~~G~r~G~~~~v~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~  304 (407)
                      .+++.|..|.++ .||   |.+. +.++. . ..+...+...                   .+....+++..+..++..+
T Consensus       225 D~~~~s~hK~l~g~pG---~~l~-v~~~~-~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~a  298 (406)
T TIGR01814       225 DFACWCTYKYLNAGPG---AGAF-VHEKH-A-HTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGS  298 (406)
T ss_pred             CEEEEcCccccCCCCC---eEEE-Eehhh-h-hhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHH
Confidence            688899999864 344   3331 34421 1 1111100000                   0001124555555555555


Q ss_pred             hcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcccccC-----CceeEEe-cCCCHHHHHHhHhhccEEEc
Q 015435          305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR-GTPGDWSHIIK-----QIGMFTF-TGLNSEQVAFMTKEYHIYMT  377 (407)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~l~~~gi~~~  377 (407)
                      ++-..     ....++.+++.++..+++.+.+.+. +....+.+..+     .++++.+ .+.+.+.+.+.|.++||.+.
T Consensus       299 l~~~~-----~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L~~~gi~v~  373 (406)
T TIGR01814       299 LDIFD-----QAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHPVPGKAVFQALIKRGVIGD  373 (406)
T ss_pred             HHHHH-----hcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEecCCHHHHHHHHHHCCEEEe
Confidence            54221     1235677788889999999988764 20001333322     2334332 23456666666677899886


Q ss_pred             CC--C--eEEec--CCCCCChhHHHHHHHHHH
Q 015435          378 SD--G--RISMA--GLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       378 ~g--g--Ris~~--~~~~e~i~~~~~~l~~~l  403 (407)
                      ..  +  |||++  ..+++|+++++++|++++
T Consensus       374 ~~~~~~iRiS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       374 KREPSVIRVAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             ccCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence            53  2  99984  347799999999998865

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.77  E-value=1.5e-16  Score=153.57  Aligned_cols=346  Identities=15%  Similarity=0.093  Sum_probs=199.3

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc-CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE-YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++|||..|....+.| ..++++++++.+++. .....+. +.+.....++.+.+++...+...   ...-+++  
T Consensus        54 D~dG~~ylD~~~g~~~~~lG-H~~p~v~~Ai~~q~~-~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~---~~~~~f~--  126 (459)
T PRK06931         54 DVEGNQYLDCLAGAGTLALG-HNHPDVLQSIQDVLT-SGLPLHTLDLTTPLKDAFSEYLLSLLPGQGK---EYCLQFT--  126 (459)
T ss_pred             eCCCCEEEEcccchhhccCC-CCCHHHHHHHHHHHh-hhccccccccCCHHHHHHHHHHHHhCCCccc---cceEEEe--
Confidence            45679999999997655667 667788888888875 1111111 11222233455555554411100   0012355  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcC-------------ceeeEEEeecCCCC--C----cChh
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAG-------------LSVKTYRYYDPATR--G----LNFQ  166 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G-------------~~~~~v~~~~~~~~--~----~d~~  166 (407)
                      ++||++|++.++++.+.....++|+...-+|++........+             ..+..+|..+....  +    -+.+
T Consensus       127 ~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (459)
T PRK06931        127 GPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVK  206 (459)
T ss_pred             CCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHH
Confidence            699999999999888777666689989988988765444221             11223332111000  0    1122


Q ss_pred             hH----HHHHHc---C-CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435          167 GL----LEDLRA---A-PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM  237 (407)
Q Consensus       167 ~l----~~~i~~---~-~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~  237 (407)
                      .+    ++.+.+   . ++..++++-+-..+ .|. ..+++.++++.++|++||+++|+||+..+|+..+   ..+....
T Consensus       207 ~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~-gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG---~~~a~~~  282 (459)
T PRK06931        207 ALTYYFENFIEDVESGVRKPAAVILEAIQGE-GGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTG---KMFAFEH  282 (459)
T ss_pred             HHHHHHHHHHHhhhcCCCceEEEEEccccCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCc---hHHHhhh
Confidence            22    223321   1 22455555443333 355 4789999999999999999999999999998654   3344333


Q ss_pred             HHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHH
Q 015435          238 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLE  317 (407)
Q Consensus       238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  317 (407)
                      +.- ..++++   ++|.++ .|+++|.+  +.. ++    + +.+.......+++.+++++.++.+.|+...        
T Consensus       283 ~gv-~PDivt---~gK~l~-gG~Pi~av--~~~-~~----~-~~~~~~~~~~T~~gnpla~aaala~L~~l~--------  341 (459)
T PRK06931        283 AGI-EPDIIV---MSKAVG-GGLPLAVL--GIK-KE----F-DAWQPGGHTGTFRGNQLAMATGLTTLKILK--------  341 (459)
T ss_pred             cCC-CCCEEE---eccccc-CCcceeee--eeH-HH----H-hhccCCCCCCCCCCCHHHHHHHHHHHHHHH--------
Confidence            322 223333   699998 68999987  444 22    2 222222233455788888888888776321        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC--CCCCcccccCCceeEEe--cCC------------CHH---HHHHhHhhccEEEcC
Q 015435          318 LKAMADRIISMRQQLFDALSARG--TPGDWSHIIKQIGMFTF--TGL------------NSE---QVAFMTKEYHIYMTS  378 (407)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~--~~~------------~~~---~~~~~l~~~gi~~~~  378 (407)
                      -+...++.+++.++|.+.|+++-  .+. +..+...|.++.+  ..-            +.+   .+...+.++|+.+.+
T Consensus       342 ~~~l~~~~~~~G~~l~~~L~~l~~~~~~-i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~  420 (459)
T PRK06931        342 EENLAQNAAERGEWLKAQLAELQKRYPC-IGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLER  420 (459)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEee
Confidence            11344555666666666666541  110 2222333443322  110            111   233444568999976


Q ss_pred             CC------eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          379 DG------RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       379 gg------Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+      |+..+- +++++++.+++++.+++++
T Consensus       421 ~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~  454 (459)
T PRK06931        421 GGRNGNVVRLLPPLLITQAECEEFIDRFEQALLA  454 (459)
T ss_pred             cCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence            53      554432 5889999999999999875

>PRK07046 aminotransferase; Validated

Probab=99.77  E-value=2.2e-16  Score=152.07  Aligned_cols=334  Identities=16%  Similarity=0.101  Sum_probs=198.7

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++++||+..|......| ..++.+++++.+++.  ......+ +.....++.+.+++.. +       .+.+.+  ++
T Consensus        72 ~DG~~yiD~~~g~g~~~lG-h~~p~i~~Av~~q~~--~~~~~~~-~~~~~~~lAe~l~~~~-~-------~~~v~F--~n  137 (453)
T PRK07046         72 VDGHRYDDFCLGDTGAMFG-HSPAPVARALAEQAR--RGLTTML-PSEDAAWVGEELARRF-G-------LPYWQV--AT  137 (453)
T ss_pred             CCCCEEEEecccccccccC-CCCHHHHHHHHHHHH--hCCCCCC-CCHHHHHHHHHHHHHh-C-------CCEEEE--EC
Confidence            4578999998886544456 667788888888886  2222222 3334455666666654 2       278999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhh--cCcee----------e-----EEEeecCCCCCcChhhHHH
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTL--AGLSV----------K-----TYRYYDPATRGLNFQGLLE  170 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~--~G~~~----------~-----~v~~~~~~~~~~d~~~l~~  170 (407)
                      |||+|.+.++++.+.....++|+...-+|+++.+....  .+.+.          .     .+..  +.   -|++.+++
T Consensus       138 SGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~---nd~~~l~~  212 (453)
T PRK07046        138 TATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVV--EF---NDLAALEA  212 (453)
T ss_pred             CHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEee--CC---CCHHHHHH
Confidence            99999999998888776667899999889887543221  01000          0     0000  11   27888888


Q ss_pred             HHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEe
Q 015435          171 DLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQS  250 (407)
Q Consensus       171 ~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  250 (407)
                      .+.. .+..++++-+-..|..-...+++.++++.++|++||+++|+||+.. |..+ .. ...  ..+ .-..+++   +
T Consensus       213 ~l~~-~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g-~G-g~~--~~~-gv~PDi~---t  282 (453)
T PRK07046        213 ALAD-GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSG-PG-GYT--RAH-GLEPDFL---V  282 (453)
T ss_pred             HhCC-CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccC-Cc-chh--HHh-CCCccce---e
Confidence            8852 3445555543333332244677899999999999999999999976 4221 10 111  111 1112233   3


Q ss_pred             cCccccccCCCcceeEEeecChhhHHHHHHHHh-----hhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          251 YAKNMGLYGERVGALSIVCKTEDVASRVESQLK-----LVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       251 ~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                      ++|.++ .|+++|.+  +.+ +++.+.+.....     ......+++.+++++.++.+.|+...        -+...+++
T Consensus       283 ~gK~lg-gG~Pi~av--~g~-~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~--------~~~~~~~~  350 (453)
T PRK07046        283 VGKPIA-GGVPCAVY--GFS-AELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVM--------TEAAYAHM  350 (453)
T ss_pred             ehhhhc-CCCcceee--eeh-HHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHh--------cccHHHHH
Confidence            899999 78999988  344 444443321100     11122345678888888887765321        01233445


Q ss_pred             HHHHHHHHHHHHh----cCCCCCcccccCCceeEEec--C------------CCHH---HHHHhHhhccEEEcCCC---e
Q 015435          326 ISMRQQLFDALSA----RGTPGDWSHIIKQIGMFTFT--G------------LNSE---QVAFMTKEYHIYMTSDG---R  381 (407)
Q Consensus       326 ~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~--~------------~~~~---~~~~~l~~~gi~~~~gg---R  381 (407)
                      +++.++|.+.|++    .+.+  +. +...|.++.+.  .            .+.+   .+...+.++||.+.+.+   +
T Consensus       351 ~~~g~~l~~~L~~l~~~~~~~--~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~  427 (453)
T PRK07046        351 LALAARLAAGLRAVIARHGLP--WH-VTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPFHNMML  427 (453)
T ss_pred             HHHHHHHHHHHHHHHHhCCCC--eE-EEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecccCcEE
Confidence            5555555555554    3321  12 22223333221  1            0122   12333445899998865   6


Q ss_pred             EEecCCCCCChhHHHHHHHHHHHhh
Q 015435          382 ISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       382 is~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++.. ++++|++.+++++.++++++
T Consensus       428 ~~p~-~t~~did~~~~~~~~~l~~~  451 (453)
T PRK07046        428 VCPA-TTAADVDRLVAAFDACLGEL  451 (453)
T ss_pred             EeCC-CCHHHHHHHHHHHHHHHHHH
Confidence            6766 59999999999999998764

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.77  E-value=7.6e-17  Score=152.90  Aligned_cols=288  Identities=16%  Similarity=0.153  Sum_probs=174.9

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC-------------------------------
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-------------------------------  125 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~-------------------------------  125 (407)
                      ++.+....++.+|+....     |   ++..||+.|+..++  ...+.|                               
T Consensus        96 ie~l~~~ra~~lf~a~~a-----n---vqp~Sg~~An~~v~--~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~  165 (493)
T PRK13580         96 VEWEAAEHAKELFGAEHA-----Y---VQPHSGADANLVAF--WAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELG  165 (493)
T ss_pred             HHHHHHHHHHHHhCCCcc-----c---ccCCCcHHHHHHHH--HHHhcccccCcchhccccccccccchhhhhhhhccCC
Confidence            444444555555564322     2   55778888888884  445654                               


Q ss_pred             CCeEEecCCCCCChHHH-----HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHH
Q 015435          126 QLTIYIPQPTWGNHPKV-----FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQW  200 (407)
Q Consensus       126 gd~Vi~~~p~y~~~~~~-----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l  200 (407)
                      ||+|+..++...++...     +.....+.+.++++ +.++.+|++++++.+.  +.++.+++ +..+|-++ ..   ++
T Consensus       166 gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd-~~~g~iD~d~l~~~~~--~~~plvii-~g~S~~~~-~~---dl  237 (493)
T PRK13580        166 NQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVD-PDTGLLDYDEIAALAR--EFKPLILV-AGYSAYPR-RV---NF  237 (493)
T ss_pred             CCEEEeecCCCCCeeecCcccchhhheeeeEecccC-cccCccCHHHHHHHHh--hcCCEEEE-eCccccCC-Cc---CH
Confidence            89999888766554222     12223566777773 4557899999999998  67788777 45555443 33   68


Q ss_pred             HHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHH
Q 015435          201 EQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVES  280 (407)
Q Consensus       201 ~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~  280 (407)
                      ++|+++|+++|+++++|+++......+   +... ..+.......++++|++|++.  |-+.|++  +++ ++    +.+
T Consensus       238 ~~i~eia~~~gA~L~VD~AH~~Gligg---~~~~-~~~~~~~~~D~vtgT~hKaL~--GP~GG~I--~~~-~~----l~~  304 (493)
T PRK13580        238 AKLREIADEVGAVLMVDMAHFAGLVAG---KVFT-GDEDPVPHADIVTTTTHKTLR--GPRGGLV--LAK-KE----YAD  304 (493)
T ss_pred             HHHHHHHHHcCCEEEEECchhhceecc---ccch-hhcCCCCCCcEEEeCChhhcc--CCCeEEE--Eec-HH----HHH
Confidence            888888999999999999986544432   1110 001111234588999999873  3344776  454 44    344


Q ss_pred             HHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--CCceeEEec
Q 015435          281 QLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII--KQIGMFTFT  358 (407)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~  358 (407)
                      .+........+++.++...++...+....     .....+.++++.++.++|.+.|.+.|    +.+..  ..+.++ ++
T Consensus       305 ~L~~a~P~i~gg~l~p~iAA~avAl~e~~-----~~ef~~y~~~l~~Na~~La~~L~~~G----~~vv~ggTdshIV-~V  374 (493)
T PRK13580        305 AVDKGCPLVLGGPLPHVMAAKAVALAEAR-----TPEFQKYAQQVVDNARALAEGFLKRG----ARLVTGGTDNHLV-LI  374 (493)
T ss_pred             HHhhCCCcccCCCccHHHHHHHHHHHHHh-----CccHHHHHHHHHHHHHHHHHHHHhcC----CCccCCCCCCCEE-EE
Confidence            34322222223443333333332332110     01124567889999999999999998    55432  223333 33


Q ss_pred             CC-----CHHHHHHhHhhccEEEcC--------C-----C-eEEecC-----CCCCChhHHHHHHHHHHHh
Q 015435          359 GL-----NSEQVAFMTKEYHIYMTS--------D-----G-RISMAG-----LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       359 ~~-----~~~~~~~~l~~~gi~~~~--------g-----g-Ris~~~-----~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+     +...+.+.|++.||.+.+        +     + ||++..     ++++|++++++.|.++++.
T Consensus       375 ~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~  445 (493)
T PRK13580        375 DVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN  445 (493)
T ss_pred             EeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence            33     233566788889999863        1     2 776442     3578999999999988764

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.76  E-value=9.6e-17  Score=151.44  Aligned_cols=259  Identities=18%  Similarity=0.134  Sum_probs=164.0

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEE
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYR  154 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~  154 (407)
                      .-..+|.+++++++ +.       ++++.  +++||.|+.+++.. ..+.+||+|++|..+|.....++...|++++.++
T Consensus        25 ~~~~~fE~~~a~~~-g~-------~~~~~--~~sgt~Al~~al~~-l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~D   93 (363)
T PF01041_consen   25 PYVEEFEKEFAEYF-GV-------KYAVA--VSSGTSALHLALRA-LGLGPGDEVIVPAYTFPATASAILWAGAEPVFVD   93 (363)
T ss_dssp             HHHHHHHHHHHHHH-TS-------SEEEE--ESSHHHHHHHHHHH-TTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-
T ss_pred             HHHHHHHHHHHHHh-CC-------CeEEE--eCChhHHHHHHHHh-cCCCcCceEecCCCcchHHHHHHHHhccEEEEEe
Confidence            45788999999999 54       78988  99999999999533 2355899999999999999999999999999999


Q ss_pred             eecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccC-CCCCchhH
Q 015435          155 YYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS-GSLDADAQ  233 (407)
Q Consensus       155 ~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~-~~~~~~~~  233 (407)
                      + +++++.+|++.+++.++  +++++|++++.    -|.   +.++.+|.++|+++|++||+|.+.+.... .+      
T Consensus        94 i-~~~~~~id~~~~~~~i~--~~t~ai~~~h~----~G~---~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g------  157 (363)
T PF01041_consen   94 I-DPETLNIDPEALEKAIT--PKTKAILVVHL----FGN---PADMDAIRAIARKHGIPLIEDAAQAFGARYKG------  157 (363)
T ss_dssp             B-ETTTSSB-HHHHHHHHH--TTEEEEEEE-G----GGB------HHHHHHHHHHTT-EEEEE-TTTTT-EETT------
T ss_pred             c-cCCcCCcCHHHHHHHhc--cCccEEEEecC----CCC---cccHHHHHHHHHHcCCcEEEccccccCceeCC------
Confidence            9 47889999999999999  67788777533    344   44899999999999999999999764332 11      


Q ss_pred             HHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhh------c-------ccCCCChhHHHH
Q 015435          234 SVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIR------P-------MYSSPPIHGASI  300 (407)
Q Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~  300 (407)
                        ......++-.++.+..+|.++ .|. -|++  ++.++++.+++.........      .       .....+.+....
T Consensus       158 --~~~G~~gd~~~fSf~~~K~i~-~ge-GG~v--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAi  231 (363)
T PF01041_consen  158 --RPVGSFGDIAIFSFHPTKIIT-TGE-GGAV--VTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAI  231 (363)
T ss_dssp             --EETTSSSSEEEEESSTTSSS--SSS--EEE--EESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHH
T ss_pred             --EeccCCCCceEecCCCCCCCc-CCC-CeeE--EecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHH
Confidence              001222333444444478885 443 3777  78888888776653332221      0       001122222222


Q ss_pred             HHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-c-cCC---ceeEEe---cC----CCHHHHHHh
Q 015435          301 VATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH-I-IKQ---IGMFTF---TG----LNSEQVAFM  368 (407)
Q Consensus       301 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~-~~~---~~~~~~---~~----~~~~~~~~~  368 (407)
                      +...|+          .+++..++-+++.+++.+.|.+.+.   +.. . .+.   ..++.+   ++    .+.+.+.+.
T Consensus       232 gl~QL~----------~L~~~~~~R~~~a~~y~~~L~~~~~---~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~  298 (363)
T PF01041_consen  232 GLAQLK----------RLDEIIARRRENAQRYREALAGIPG---IKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEA  298 (363)
T ss_dssp             HHHHHH----------THHHHHHHHHHHHHHHHHHHTTGTT---EEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHH
T ss_pred             HHHHHH----------HhhhhHHHHHHHHHHHHHHHhcCCC---cccccccccccccccccccccccccccchHHHHHHH
Confidence            232232          2444455555677788888887753   221 1 111   223222   22    256777777


Q ss_pred             HhhccEEEcCC
Q 015435          369 TKEYHIYMTSD  379 (407)
Q Consensus       369 l~~~gi~~~~g  379 (407)
                      |.+.||.+.+.
T Consensus       299 L~~~GI~~~~~  309 (363)
T PF01041_consen  299 LRARGIETRPH  309 (363)
T ss_dssp             HHHTTBEEBCS
T ss_pred             HHHCCCccccc
Confidence            77789988653

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK07483 hypothetical protein; Provisional

Probab=99.76  E-value=3.1e-16  Score=150.82  Aligned_cols=346  Identities=10%  Similarity=0.070  Sum_probs=201.1

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc-cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK-EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++.+||+..|....+.| ..++.+++++.+++. .....+ .+.......++.+.+++.. ..     ..+.+++  
T Consensus        26 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~av~~ql~-~~~~~~~~~~~~~~~~~lae~L~~~~-p~-----~~~~v~f--   95 (443)
T PRK07483         26 DATGKRYLDASGGAAVSCLG-HSHPRVIAAIHAQID-RLAYAHTSFFTTEPAEALADRLVAAA-PA-----GLEHVYF--   95 (443)
T ss_pred             eCCCCEEEEcCccHhhhccC-CCCHHHHHHHHHHHH-hccCccccccCCHHHHHHHHHHHHhC-CC-----CCCEEEE--
Confidence            45678999999997666677 667788888888886 111011 1111222334455555543 11     1268999  


Q ss_pred             cCCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHHhhc-Cc------------eeeEEEeecCCCCC---c
Q 015435          106 CLSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVFTLA-GL------------SVKTYRYYDPATRG---L  163 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~~~~---~  163 (407)
                      ++||++|++.++++.+.+.     +| .+|+...-+|++........ |.            .+..++.....+..   .
T Consensus        96 ~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  175 (443)
T PRK07483         96 VSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGE  175 (443)
T ss_pred             cCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCC
Confidence            9999999999999887762     33 46888888887765322211 11            11222211000000   0


Q ss_pred             --------ChhhHHHHHHc-C-CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          164 --------NFQGLLEDLRA-A-PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       164 --------d~~~l~~~i~~-~-~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                              .++++++.+.+ . ++..++++-+-..+-.|. ..+++.++++.++|++||+++|+||+..+|+..+   +.
T Consensus       176 ~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG---~~  252 (443)
T PRK07483        176 SDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG---TL  252 (443)
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc---HH
Confidence                    02456665542 2 233455553322222354 4778899999999999999999999999997654   34


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhh----hhcccCCCChhHHHHHHHHhcC
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLV----IRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                      +....+.- ..++++   ++|.++ .|+ ++|.+  +++ ++    +.+.+...    ....+++.+++++.++.+.|+-
T Consensus       253 ~a~~~~gv-~PDiv~---~gK~l~-gG~~Pi~av--~~~-~~----i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~  320 (443)
T PRK07483        253 FACEEDGV-APDLVT---IAKGLG-AGYQPIGAV--LAS-DR----IYDAIADGSGFFQHGHTYLGHATACAAALAVQRV  320 (443)
T ss_pred             HHHhhcCC-CCCeee---ehhhhc-cCccccEEE--EEc-HH----HHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHH
Confidence            44333322 223333   699998 685 89998  465 33    43333211    1223557788888888877753


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccccCCceeEEec---C------CC-----HHHHHHhHhh
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFT---G------LN-----SEQVAFMTKE  371 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~---~------~~-----~~~~~~~l~~  371 (407)
                      ..        -+.+.++.+++.++|.+.|+++  ..+. +.-+...|.++.+-   +      .+     .+.+...+.+
T Consensus       321 i~--------~~~l~~~~~~~g~~l~~~L~~l~~~~~~-i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (443)
T PRK07483        321 IA--------EDGLLANVRARGEQLRARLRERLGQHPH-VGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMA  391 (443)
T ss_pred             HH--------hcCHHHHHHHHHHHHHHHHHHHHhcCCC-eeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHH
Confidence            21        1234566666777777777653  2110 12223334333221   1      01     1234444555


Q ss_pred             ccEEEcCC--------C---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          372 YHIYMTSD--------G---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       372 ~gi~~~~g--------g---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +|+.+.+.        |   ||...- ++++++++++++|.++++++
T Consensus       392 ~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~  438 (443)
T PRK07483        392 RGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAA  438 (443)
T ss_pred             CCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            89998653        2   664332 58899999999999998753

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.76  E-value=7.3e-16  Score=144.72  Aligned_cols=282  Identities=14%  Similarity=0.113  Sum_probs=185.1

Q ss_pred             cCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----
Q 015435           70 EYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----  143 (407)
Q Consensus        70 ~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----  143 (407)
                      .|+.  .+....|.+.++++. +.       +..++  ++||+.|+..++  +..+.+||+|++++..|.+....+    
T Consensus        55 ~YsR~~nPt~~~le~~la~LE-g~-------~~a~~--~~SGmaAi~~~~--~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l  122 (395)
T PRK08114         55 FYGRRGTLTHFSLQEAMCELE-GG-------AGCAL--YPCGAAAVANAI--LAFVEQGDHVLMTGTAYEPTQDFCSKIL  122 (395)
T ss_pred             cccCCCChhHHHHHHHHHHHh-CC-------CeEEE--EhHHHHHHHHHH--HHHcCCCCEEEEeCCCcHHHHHHHHHHH
Confidence            3544  334667778888865 32       57777  999999999884  556889999999998997776654    


Q ss_pred             hhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC--ceeeeccccc
Q 015435          144 TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKG--LLPFFDSAYQ  221 (407)
Q Consensus       144 ~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~--~~li~D~~y~  221 (407)
                      +..|+++..++.       .|.+++++++.  +++++|++ .+|.||||.+.   |+++|+++|+++|  +++++|.+++
T Consensus       123 ~~~Gi~v~~vd~-------~d~~~l~~~l~--~~TrlV~~-EtpsNp~~~v~---DI~~Ia~ia~~~g~g~~lvVDnT~a  189 (395)
T PRK08114        123 SKLGVTTTWFDP-------LIGADIAKLIQ--PNTKVVFL-ESPGSITMEVH---DVPAIVAAVRSVNPDAVIMIDNTWA  189 (395)
T ss_pred             HhcCcEEEEECC-------CCHHHHHHhcC--CCceEEEE-ECCCCCCCEee---cHHHHHHHHHHhCCCCEEEEECCCc
Confidence            567999888853       36788999987  67888888 89999999966   5899999999984  9999999985


Q ss_pred             cccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHH
Q 015435          222 GFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIV  301 (407)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (407)
                      ....-    ++       ......++++|.+|.++.+|.-+|.+  ++.+++..+.    +...........++.....+
T Consensus       190 ~p~~~----~p-------l~~GaDivv~S~tKyl~Ghsdv~~G~--v~~~~~~~~~----l~~~~~~~G~~~~p~~a~l~  252 (395)
T PRK08114        190 AGVLF----KA-------LDFGIDISIQAGTKYLVGHSDAMIGT--AVANARCWEQ----LRENSYLMGQMVDADTAYMT  252 (395)
T ss_pred             ccccc----CH-------HHcCCcEEEEcCcccccCCCcceeEE--EEcCHHHHHH----HHHHHHhccCCCCHHHHHHH
Confidence            43221    11       11245799999999988776434334  3555543333    33222223334455555544


Q ss_pred             HHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Cccc----ccCCceeEEec-CC--CHH
Q 015435          302 ATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSH----IIKQIGMFTFT-GL--NSE  363 (407)
Q Consensus       302 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~----~~~~~~~~~~~-~~--~~~  363 (407)
                      ..-|+.          +..+.++..++...+.+.|++.+.      |.     ..+.    ....||++.+. +-  +.+
T Consensus       253 ~rgl~T----------L~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~  322 (395)
T PRK08114        253 SRGLRT----------LGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDE  322 (395)
T ss_pred             HcCCCc----------HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHH
Confidence            444443          445567777888889999987642      11     0000    11246677654 21  344


Q ss_pred             HHHHhHhhccEEE------------c------------------CCC--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          364 QVAFMTKEYHIYM------------T------------------SDG--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       364 ~~~~~l~~~gi~~------------~------------------~gg--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+.++++...+..            .                  ++|  |+|++-   |+.+.+++-|.++|+.+
T Consensus       323 ~~~~f~~~l~l~~~a~SlGg~~SLi~~~~~~~~~~~~~~~~~~~~~~liRlSvGl---Ed~~DLi~Dl~~Al~~~  394 (395)
T PRK08114        323 QLANYLDNFSLFSMAYSWGGFESLILANQPEEIAAIRPAGEVDFTGTLIRLHIGL---EDVDDLIADLAAGFARI  394 (395)
T ss_pred             HHHHHHHhCCcceeecccCCccceeccCCchhhhccCChhHhcCCCCeEEEEecc---CCHHHHHHHHHHHHHhh
Confidence            5555555433311            1                  113  888773   88999999999998753

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.76  E-value=6.6e-16  Score=144.71  Aligned_cols=280  Identities=18%  Similarity=0.197  Sum_probs=181.6

Q ss_pred             cccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-
Q 015435           68 VKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-  144 (407)
Q Consensus        68 ~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-  144 (407)
                      ...|+.  .+....+.+.++++. +.       +.+++  +++|+.|+..+  ++..+.+||.|+++...|.+....++ 
T Consensus        46 ~~~Y~R~gnPt~~~le~~la~Le-~g-------~~a~~--~~SGmaAi~~~--l~~ll~~Gd~iv~~~~~Y~~t~~~~~~  113 (386)
T PF01053_consen   46 GYIYSRYGNPTVRALEQRLAALE-GG-------EDALL--FSSGMAAISAA--LLALLKPGDHIVASDDLYGGTYRLLEE  113 (386)
T ss_dssp             SCSBTTTC-HHHHHHHHHHHHHH-T--------SEEEE--ESSHHHHHHHH--HHHHS-TTBEEEEESSSSHHHHHHHHH
T ss_pred             CcceeccccccHHHHHHHHHHhh-cc-------cceee--ccchHHHHHHH--HHhhcccCCceEecCCccCcchhhhhh
Confidence            355655  233566778888876 32       67888  99999999888  46678899999999999988877666 


Q ss_pred             ---hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC-ceeeecccc
Q 015435          145 ---LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKG-LLPFFDSAY  220 (407)
Q Consensus       145 ---~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~-~~li~D~~y  220 (407)
                         ..|+++..++.       -|++++++++.  +++++|++ -+|.||+..+   -|+++|+++|+++| +++++|+.+
T Consensus       114 ~l~~~gv~v~~~d~-------~d~~~l~~~l~--~~t~~v~~-EspsNP~l~v---~Dl~~i~~~a~~~g~~~~vVDnT~  180 (386)
T PF01053_consen  114 LLPRFGVEVTFVDP-------TDLEALEAALR--PNTKLVFL-ESPSNPTLEV---PDLEAIAKLAKEHGDILVVVDNTF  180 (386)
T ss_dssp             CHHHTTSEEEEEST-------TSHHHHHHHHC--TTEEEEEE-ESSBTTTTB------HHHHHHHHHHTTT-EEEEECTT
T ss_pred             hhcccCcEEEEeCc-------hhHHHHHhhcc--ccceEEEE-EcCCCccccc---ccHHHHHHHHHHhCCceEEeeccc
Confidence               46888877733       48899999998  67888888 8999999774   47999999999998 999999998


Q ss_pred             ccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecC-hhhHHHHHHHHhhhhhcccCCCChhHHH
Q 015435          221 QGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKT-EDVASRVESQLKLVIRPMYSSPPIHGAS  299 (407)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (407)
                      .....-.    +     + . ....+++.|.+|.++..|--+|.++ ++++ ++..+++    ...........++....
T Consensus       181 atp~~~~----p-----L-~-~GaDivv~S~TKyl~Ghsdv~~G~v-v~~~~~~~~~~l----~~~~~~~G~~~~p~da~  244 (386)
T PF01053_consen  181 ATPYNQN----P-----L-E-LGADIVVHSATKYLSGHSDVMGGAV-VVNGSSELYDRL----REFRRLLGATLSPFDAW  244 (386)
T ss_dssp             THTTTC-----G-----G-G-GT-SEEEEETTTTTTTSSSE-EEEE-EESSHHHHHHHH----HHHHHHHT-B--HHHHH
T ss_pred             cceeeec----c-----C-c-CCceEEEeeccccccCCcceeeEEE-EECchhhhhhhh----cchhhhcCccchHHHHH
Confidence            6543321    1     1 1 2346889999999986665555553 4444 3444443    33333333355555555


Q ss_pred             HHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-cc-----------------cCCceeEEecCCC
Q 015435          300 IVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-HI-----------------IKQIGMFTFTGLN  361 (407)
Q Consensus       300 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~  361 (407)
                      .+..-++.          +..+.++..++...+.+.|++.+.   +. +.                 ...+|++.+.=-+
T Consensus       245 ll~rgl~T----------l~~R~~~~~~nA~~lA~~L~~hp~---V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~  311 (386)
T PF01053_consen  245 LLLRGLRT----------LPLRMERQNENAEALAEFLEEHPK---VKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKG  311 (386)
T ss_dssp             HHHHHHTT----------HHHHHHHHHHHHHHHHHHHHTSTT---EEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESS
T ss_pred             HHhcCCCc----------HHHHHHHHHHHHHHHHHHHHhCCC---CCeEEEcccccccceeeeeecccccCceeEEEecc
Confidence            55555543          345556777888899999988752   21 11                 1245555544223


Q ss_pred             H-HHHHHhHhhccEE-EcC--C-------------------------C------eEEecCCCCCChhHHHHHHHHHHH
Q 015435          362 S-EQVAFMTKEYHIY-MTS--D-------------------------G------RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       362 ~-~~~~~~l~~~gi~-~~~--g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      . +.+..++++.++. ..+  |                         |      |+|++-   |+.+.+++.|+++|+
T Consensus       312 ~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl---Ed~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  312 GEEAARRFLDALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL---EDPDDLIADLEQALE  386 (386)
T ss_dssp             HHHHHHHHHHH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S---S-HHHHHHHHHHHHH
T ss_pred             chhhhHhHHhhhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc---CCHHHHHHHHHHhcC
Confidence            3 4566666665543 211  1                         1      888883   889999999999885

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.75  E-value=3.6e-15  Score=138.01  Aligned_cols=278  Identities=17%  Similarity=0.177  Sum_probs=190.4

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCce
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGLS  149 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~~  149 (407)
                      .+....+.++++++- +.       ++.+.  ++||+.|+..+  ++..+++||.|++++..|.+....+.    ..|++
T Consensus        62 nPT~~~lE~~~a~LE-g~-------~~~~a--fsSGmaAI~~~--~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~  129 (396)
T COG0626          62 NPTRDALEEALAELE-GG-------EDAFA--FSSGMAAISTA--LLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVE  129 (396)
T ss_pred             CccHHHHHHHHHHhh-CC-------CcEEE--ecCcHHHHHHH--HHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeE
Confidence            345677788888876 32       67877  99999999998  46778899999999999988766554    67888


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                      +.+++.       -+.+++++++.+ +++++|++ -+|.|||-.+   -|+.+|+++|+++|+++|+|+.|+...+-.  
T Consensus       130 ~~~~d~-------~~~~~~~~~~~~-~~tk~v~l-EtPsNP~l~v---~DI~~i~~~A~~~g~~vvVDNTfatP~~q~--  195 (396)
T COG0626         130 VTFVDP-------GDDEALEAAIKE-PNTKLVFL-ETPSNPLLEV---PDIPAIARLAKAYGALVVVDNTFATPVLQR--  195 (396)
T ss_pred             EEEECC-------CChHHHHHHhcc-cCceEEEE-eCCCCccccc---ccHHHHHHHHHhcCCEEEEECCcccccccC--
Confidence            887743       245566666652 47889888 8999999774   479999999999999999999987655431  


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                        +.       .....|++.|.+|.++..+-=+|.++ +++++++.+.+....+   .......++.....+.+-++.  
T Consensus       196 --PL-------~~GaDIVvhSaTKyl~GHsDvl~G~v-~~~~~~~~~~~~~~~~---~~~G~~l~p~dA~l~lRGlkT--  260 (396)
T COG0626         196 --PL-------ELGADIVVHSATKYLGGHSDVLGGVV-LTPNEELYELLFFAQR---ANTGAVLSPFDAWLLLRGLRT--  260 (396)
T ss_pred             --hh-------hcCCCEEEEeccccccCCcceeeeEE-ecChHHHHHHHHHHHH---hhcCCCCCHHHHHHHHhccch--
Confidence              11       12357999999999987766666642 4565554444322111   112334555555555544443  


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-cc-c----------------CCceeEEecCCCHHHHHHhHhh
Q 015435          310 MYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-HI-I----------------KQIGMFTFTGLNSEQVAFMTKE  371 (407)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~-~----------------~~~~~~~~~~~~~~~~~~~l~~  371 (407)
                              +..+.++..++...+.++|++.+.   ++ +. +                ..||+|+|.=-+.+.+.++++.
T Consensus       261 --------L~~Rm~~~~~nA~~IA~~L~~~p~---V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~  329 (396)
T COG0626         261 --------LALRMERHNENALKIAEFLADHPK---VKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDS  329 (396)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHhcCCC---eEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHh
Confidence                    445556777888889999987542   11 11 1                2577777652222666666666


Q ss_pred             ccEEEc---CC-------------------------C------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          372 YHIYMT---SD-------------------------G------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       372 ~gi~~~---~g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      -.++..   =|                         |      |+|++-   |+++.+++-|+++++..
T Consensus       330 L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl---Ed~eDLi~Dl~~Al~~~  395 (396)
T COG0626         330 LKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL---EDVEDLIADLEQALAKA  395 (396)
T ss_pred             CCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHHhh
Confidence            555441   12                         1      888874   89999999999998764

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.74  E-value=2.6e-15  Score=143.57  Aligned_cols=280  Identities=13%  Similarity=0.098  Sum_probs=177.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH----HHHhhcCceee
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP----KVFTLAGLSVK  151 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~----~~~~~~G~~~~  151 (407)
                      ....+++.++++. +.       ++.++  +++|+.|+.++  +...+.+||+|+++...|.+..    ..+...|++++
T Consensus        70 t~~~le~~la~l~-g~-------~~~v~--fsSG~~Ai~~a--l~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~  137 (437)
T PRK05613         70 TVEALENRIASLE-GG-------VHAVA--FASGQAAETAA--ILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVT  137 (437)
T ss_pred             HHHHHHHHHHHHh-CC-------CeEEE--eCCHHHHHHHH--HHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEE
Confidence            3677888888877 43       34555  66667888876  3455789999999999998774    34467899998


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      .++.  +    .|+++++++++  ++++++++ .++.||+|.+.   ++++|+++|+++|+++|+|.+++....-    .
T Consensus       138 ~vd~--~----~d~e~l~~~l~--~~tk~V~~-e~~~Np~~~v~---di~~I~~la~~~gi~livD~t~a~g~~~----~  201 (437)
T PRK05613        138 FVEN--P----DDPESWQAAVQ--PNTKAFFG-ETFANPQADVL---DIPAVAEVAHRNQVPLIVDNTIATAALV----R  201 (437)
T ss_pred             EECC--C----CCHHHHHHhCC--ccCeEEEE-ECCCCCCCccc---CHHHHHHHHHHcCCeEEEECCCcccccc----C
Confidence            8862  2    27899999987  56777776 78999999855   5888888899999999999997432211    1


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhh-------------------------------HHHHH-
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV-------------------------------ASRVE-  279 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~-------------------------------~~~~~-  279 (407)
                        +.    . ....+++.|++|.++..|.-+|.++  +.+.++                               ...+. 
T Consensus       202 --p~----~-~GaDivv~S~~K~l~G~gd~~gG~v--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (437)
T PRK05613        202 --PL----E-LGADVVVASLTKFYTGNGSGLGGVL--IDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGL  272 (437)
T ss_pred             --hH----H-hCCCEEEeeccceecCCCcceeEEE--EecCcccccccccccccCCCCCCCccccccccccccchHHHHH
Confidence              11    1 1347889999999987777677763  422110                               00010 


Q ss_pred             HHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Ccccc
Q 015435          280 SQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSHI  348 (407)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~  348 (407)
                      +.............++.....+..-|+.          +..+.++..++...+.+.|++.+.      |.     .+...
T Consensus       273 ~~~~~~~~~~G~~~~p~~a~l~~rgl~T----------L~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~~~~~  342 (437)
T PRK05613        273 KARAGLLRDTGATLSPFNAWVTAQGLDT----------LSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYATK  342 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHcccCc----------HHHHHHHHHHHHHHHHHHHHcCCCcceEECCCCCCCccHHHH
Confidence            1111122223334455445544444433          445566777888889999987652      11     00110


Q ss_pred             -----cCCceeEEec-CCCHHHHHHhHhhccEEEc-C--C-------------------------C------eEEecCCC
Q 015435          349 -----IKQIGMFTFT-GLNSEQVAFMTKEYHIYMT-S--D-------------------------G------RISMAGLS  388 (407)
Q Consensus       349 -----~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~-~--g-------------------------g------Ris~~~~~  388 (407)
                           ..-||++.|. +-+.+.+.+++++-.+... +  |                         |      |||++-  
T Consensus       343 ~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGl--  420 (437)
T PRK05613        343 EKLGLKYTGSVLSFDIKGGKDEAWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLSVGI--  420 (437)
T ss_pred             HHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCCCCeEEEEecc--
Confidence                 1125566654 2234555555555444221 1  1                         1      888873  


Q ss_pred             CCChhHHHHHHHHHHHh
Q 015435          389 SKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~~  405 (407)
                       |+.+.+++-|.++|+.
T Consensus       421 -E~~~dLi~Dl~~Al~~  436 (437)
T PRK05613        421 -EDIDDIIADLEGGFAA  436 (437)
T ss_pred             -CCHHHHHHHHHHHHhh
Confidence             8899999999999874

>PRK06148 hypothetical protein; Provisional

Probab=99.74  E-value=8.9e-16  Score=160.97  Aligned_cols=345  Identities=11%  Similarity=0.052  Sum_probs=204.6

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++++||+..|.  .+.| ..++.+++++.+++. .......| ......++.+++++.+.+      ..+.+.+  +
T Consensus       620 D~dG~~ylD~~~g~--~~lG-H~hp~v~~Ai~~q~~-~l~~~~~~-~~~~~~~lAe~L~~~~p~------~~~~v~f--~  686 (1013)
T PRK06148        620 DNRGRAYLDCFNNV--CHVG-HAHPRVVAAAARQAA-RLNTNTRY-LHDAIVAYAERLTATLPD------GLTVAFF--V  686 (1013)
T ss_pred             ECCCCEEEEcccCh--hhcC-CCCHHHHHHHHHHHh-hcCCcCCc-CCHHHHHHHHHHHHhCCC------CcCEEEE--e
Confidence            35678999999885  2566 667788888888886 11112223 233344556666655411      1257899  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-C------------ceeeEEEeecCC--CCC-cC------
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-G------------LSVKTYRYYDPA--TRG-LN------  164 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G------------~~~~~v~~~~~~--~~~-~d------  164 (407)
                      +||++|++.++++.+......+|+...-+|++........ |            -.+..++..+..  .++ .+      
T Consensus       687 nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  766 (1013)
T PRK06148        687 NSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRR  766 (1013)
T ss_pred             CCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHH
Confidence            9999999999988877765678999888887765432211 1            011111110000  011 01      


Q ss_pred             -hhhHHHHHH---cC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH
Q 015435          165 -FQGLLEDLR---AA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV  239 (407)
Q Consensus       165 -~~~l~~~i~---~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~  239 (407)
                       .+.+++.+.   .. ....++++-+-..+......+++.++++.++|++||+++|+||+..+|+..+.  ..+....+.
T Consensus       767 ~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~--~~~a~e~~g  844 (1013)
T PRK06148        767 FAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGS--HWWAFETQG  844 (1013)
T ss_pred             HHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCC--cchhhhhcC
Confidence             134554443   22 23455555433344333457899999999999999999999999999976542  123333221


Q ss_pred             HcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh-hcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435          240 ADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI-RPMYSSPPIHGASIVATILKDSTMYKEWTLEL  318 (407)
Q Consensus       240 ~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  318 (407)
                      - ..++   -+++|.+| .|+++|.+  ++. ++    +.+.+.... ...+++.+++++.++.+.|+-..      +  
T Consensus       845 v-~PDi---vt~gK~lg-gG~Plgav--~~~-~e----i~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~------~--  904 (1013)
T PRK06148        845 V-VPDI---VTMGKPIG-NGHPMGAV--VTT-RE----IADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIE------D--  904 (1013)
T ss_pred             C-Ccce---eeeccccc-CCcceEEE--EEc-HH----HHhhccCCCccccCCCCCHHHHHHHHHHHHHHh------h--
Confidence            1 1223   33799998 78999999  565 44    444333221 12455778888888888776321      1  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCC-CcccccCCceeEEec--C-C-----CH---HHHHHhHhhccEEEcCCC------
Q 015435          319 KAMADRIISMRQQLFDALSARGTPG-DWSHIIKQIGMFTFT--G-L-----NS---EQVAFMTKEYHIYMTSDG------  380 (407)
Q Consensus       319 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~--~-~-----~~---~~~~~~l~~~gi~~~~gg------  380 (407)
                      +.+.++.+++.++|.+.|+++.... .+.-+...|.++.+-  . -     +.   ..+...+.++||.+.+.|      
T Consensus       905 e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vl  984 (1013)
T PRK06148        905 EDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVL  984 (1013)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEE
Confidence            2445666677777777776652100 011122334333321  1 0     11   223444455899998754      


Q ss_pred             eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ||...- +++++++.++++|.++++++
T Consensus       985 r~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148        985 KIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred             EEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            665432 58899999999999999764

>PRK06149 hypothetical protein; Provisional

Probab=99.73  E-value=1.2e-15  Score=160.01  Aligned_cols=343  Identities=12%  Similarity=0.050  Sum_probs=202.6

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++.+||+..|..  +.| ..++++++++.+++. .......| ......++.+++++.+..      ..+.+++  ++
T Consensus       582 ~dG~~ylD~~~~~~--~lG-h~hp~v~~Ai~~q~~-~l~~~~~~-~~~~~~elae~L~~~~p~------~~~~v~f--~~  648 (972)
T PRK06149        582 MAGRSYLDMVNNVT--VLG-HGHPRLAAAAARQWS-LLNTNSRF-HYAAVAEFSERLAALAPD------GLDTVFL--VN  648 (972)
T ss_pred             CCCCEEEECCCCcc--ccC-CCCHHHHHHHHHHHH-hccccccc-cCHHHHHHHHHHHHhCCC------CcCEEEE--eC
Confidence            45789999998753  455 567788888888876 21111112 222345566666665521      1268999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-C-----c--------eeeEEEeecCCC--CC-cC-----h
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-G-----L--------SVKTYRYYDPAT--RG-LN-----F  165 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G-----~--------~~~~v~~~~~~~--~~-~d-----~  165 (407)
                      ||++|++.++++.+.......|+..+-+|++........ +     .        .+..++..+...  +. .+     .
T Consensus       649 SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~  728 (972)
T PRK06149        649 SGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYV  728 (972)
T ss_pred             CchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHH
Confidence            999999999988877765567888888888654322110 0     0        122222211000  11 11     2


Q ss_pred             hhHHHHHH---cC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc
Q 015435          166 QGLLEDLR---AA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD  241 (407)
Q Consensus       166 ~~l~~~i~---~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~  241 (407)
                      +++++.+.   +. .+..++++-+-..+......+++.++++.++|++||+++|+||+..+|+..+.  ..+....+.- 
T Consensus       729 ~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~--~~~a~e~~gv-  805 (972)
T PRK06149        729 RDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGH--YFWGFEQQGV-  805 (972)
T ss_pred             HHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCc--cchhhhhcCC-
Confidence            34333332   12 23445555444455444568899999999999999999999999988877642  1233332211 


Q ss_pred             CCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhh-hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHH
Q 015435          242 GGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL-VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKA  320 (407)
Q Consensus       242 ~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  320 (407)
                      ..+++   +++|.+| .|..+|++  ++.     +++.+.+.. .....+.+.+++++.++.+.|+-..        -++
T Consensus       806 ~PDiv---t~gK~lg-~G~Pl~av--~~~-----~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~--------~e~  866 (972)
T PRK06149        806 VPDII---TMAKGMG-NGHPLGAV--ITR-----REIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLR--------EEK  866 (972)
T ss_pred             CCCEE---Eeccccc-CCeeeEEE--EEc-----HHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHH--------hcC
Confidence            22333   5899998 78999998  565     344444432 1111234678888888888776321        124


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCC-CcccccCCceeEEe--cC------CCH---HHHHHhHhhccEEEcCCC------eE
Q 015435          321 MADRIISMRQQLFDALSARGTPG-DWSHIIKQIGMFTF--TG------LNS---EQVAFMTKEYHIYMTSDG------RI  382 (407)
Q Consensus       321 ~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~--~~------~~~---~~~~~~l~~~gi~~~~gg------Ri  382 (407)
                      +.++.+++.++|.+.|+++.... .+..+...|.++.+  +.      -+.   ..+...+.++||.+.+.|      ||
T Consensus       867 l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~  946 (972)
T PRK06149        867 LQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKI  946 (972)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEE
Confidence            55666667777777777652100 02222333433332  11      011   223344455899998865      44


Q ss_pred             Eec-CCCCCChhHHHHHHHHHHHh
Q 015435          383 SMA-GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       383 s~~-~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ... .+++++++.++++|.+++++
T Consensus       947 ~Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        947 KPPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             ECCCcCCHHHHHHHHHHHHHHHHh
Confidence            332 25889999999999999875

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.73  E-value=1.7e-15  Score=135.89  Aligned_cols=287  Identities=18%  Similarity=0.270  Sum_probs=192.2

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH---hhcC--ceee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF---TLAG--LSVK  151 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~---~~~G--~~~~  151 (407)
                      ++.+....++.+|+.....        +|..||++|+..+  ++++++|||+|+..+..+.+|...-   ...|  ++++
T Consensus        73 vE~laierak~LFga~~an--------VQPhSGs~AN~av--~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v  142 (413)
T COG0112          73 VEELAIERAKKLFGAEYAN--------VQPHSGSQANQAV--YLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVV  142 (413)
T ss_pred             HHHHHHHHHHHHhCCCccc--------cCCCCchHHHHHH--HHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeE
Confidence            5566666666666765443        6678889999888  5777999999999987776665433   2222  4777


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-ccccCCCCCc
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFASGSLDA  230 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~~~~~~~  230 (407)
                      .+++ ++++..+|.|++++...+.  ++.++|...-..     .-.-|++++.++|++.|.+|.+|.++ ++++..+..+
T Consensus       143 ~Y~v-d~et~~IDyD~~~k~a~e~--kPK~ii~G~SaY-----~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p  214 (413)
T COG0112         143 SYGV-DPETGLIDYDEVEKLAKEV--KPKLIIAGGSAY-----SRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHP  214 (413)
T ss_pred             eccc-ccccCccCHHHHHHHHHHh--CCCEEEECcccc-----ccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCC
Confidence            7777 4667899999999998843  444455232222     22448999999999999999999997 6666655322


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhh
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTM  310 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (407)
                      ++.        ....++.+|.+|++  +|-|-|.+  ++.++    ++.++++....+...+.|-+...++.++--.+.+
T Consensus       215 ~P~--------~~AdvVTtTTHKTl--rGPrGG~I--l~~~e----el~kkin~aVFPg~qggpl~HviAakaVa~~Eal  278 (413)
T COG0112         215 NPL--------PHADVVTTTTHKTL--RGPRGGII--LTNDE----ELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEAL  278 (413)
T ss_pred             CCC--------CccceEeCCcccCC--CCCCceEE--EeccH----HHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHc
Confidence            111        12457888999986  68897887  67753    4566666655555445554444444332211221


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEe-c-----CCCHHHHHHhHhhccEEEcCC-----
Q 015435          311 YKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTF-T-----GLNSEQVAFMTKEYHIYMTSD-----  379 (407)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~l~~~gi~~~~g-----  379 (407)
                          +...++..+++.+|.+.|.+.|.+.|    +.+....+-...+ +     +++.+.+..+|++.||.+...     
T Consensus       279 ----~p~fk~Ya~qVv~NAkaLAe~l~~~G----~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D  350 (413)
T COG0112         279 ----EPEFKEYAKQVVKNAKALAEALKERG----FKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFD  350 (413)
T ss_pred             ----ChhHHHHHHHHHHHHHHHHHHHHHcC----CeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCC
Confidence                12345666777789999999999988    6655432222222 2     446888999999999998543     


Q ss_pred             --------C-eEEec-----CCCCCChhHHHHHHHHHHHh
Q 015435          380 --------G-RISMA-----GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       380 --------g-Ris~~-----~~~~e~i~~~~~~l~~~l~~  405 (407)
                              | ||...     +..++|++++.+.|.++++.
T Consensus       351 ~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         351 PESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG  390 (413)
T ss_pred             CCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence                    3 88532     24567899999999888864

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.72  E-value=5.8e-15  Score=138.54  Aligned_cols=305  Identities=14%  Similarity=0.076  Sum_probs=186.8

Q ss_pred             cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCC-CCCChHHHHhhcCc
Q 015435           70 EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQP-TWGNHPKVFTLAGL  148 (407)
Q Consensus        70 ~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p-~y~~~~~~~~~~G~  148 (407)
                      .|.......+|.+.+++++ +.       ++++.  |++||.|+.++.  ...+++||.|  +.. .+......+...|.
T Consensus        73 ~Yagd~s~~~LE~~vAe~l-G~-------e~aV~--v~sGTaAl~ll~--~l~v~pGd~V--p~n~~f~Tt~ahI~~~Ga  138 (460)
T PRK13237         73 AYAGSRNFYHLEETVQEYY-GF-------KHVVP--THQGRGAENLLS--RIAIKPGQYV--PGNMYFTTTRYHQELNGG  138 (460)
T ss_pred             hhcCCCcHHHHHHHHHHHH-CC-------CeEEE--eCCHHHHHHHHH--HhCCCCcCEE--CCccchHhhHHHHHhCCc
Confidence            4878888999999999988 65       67888  999999999873  3347799965  444 34444444788888


Q ss_pred             eeeEEEe--------ecCCCCCcChhhHHHHHHcC--CCCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeec
Q 015435          149 SVKTYRY--------YDPATRGLNFQGLLEDLRAA--PSGAIVLLHACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFD  217 (407)
Q Consensus       149 ~~~~v~~--------~~~~~~~~d~~~l~~~i~~~--~~~~~v~i~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D  217 (407)
                      ..+.+..        .++.++.+|++++++.+++.  ++++++.+ ..++|.. |...|.+++++|.++|++||+.||+|
T Consensus       139 ~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a-~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~D  217 (460)
T PRK13237        139 IFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICL-AVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFD  217 (460)
T ss_pred             EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEE-EEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEE
Confidence            6555531        12456789999999999742  22334444 3456776 78899999999999999999999999


Q ss_pred             cccccc-c-CC---CCCchhHHHHHHH-Hc-CCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhccc
Q 015435          218 SAYQGF-A-SG---SLDADAQSVRMFV-AD-GGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMY  290 (407)
Q Consensus       218 ~~y~~~-~-~~---~~~~~~~~~~~~~-~~-~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~  290 (407)
                      .+...- . +-   .......++..+. +. .-...+..|++|.++.+ . -|++  +++|+++.+++....-.+-...+
T Consensus       218 aAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~-~-GG~i--~t~D~eL~~~~r~~~~~~eG~~t  293 (460)
T PRK13237        218 ATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVN-I-GGFL--AMNDEELFDEAKELVVVYEGMPS  293 (460)
T ss_pred             CcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCC-C-ceEE--EECCHHHHHHHHHhccccCCCcC
Confidence            996421 1 00   0000111222111 11 12346677899998754 1 2777  78888766665543211111111


Q ss_pred             C-CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC---------
Q 015435          291 S-SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL---------  360 (407)
Q Consensus       291 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------  360 (407)
                      + +.+.-.+.+++..+...      .+.  ...+.--++.++|.+.|.+.|    +.+..|.||--++++.         
T Consensus       294 ygg~~grd~~alAvgl~E~------~~~--~y~~~ri~~~~~l~~~L~~~G----vpv~~p~ggH~v~vda~~~lph~~~  361 (460)
T PRK13237        294 YGGMAGRDMEAMAIGIEES------VQY--EYIEHRVGQVRYLGEKLLAAG----VPIVEPVGGHAVFLDARRFLPHLPQ  361 (460)
T ss_pred             CCChhhhHHHHHHhHHHhh------chH--HHHHHHHHHHHHHHHHHHHCC----CceecCCCceEEEEEhHHhCCCCCc
Confidence            1 11111222222222211      111  222333346789999999999    6677777776566522         


Q ss_pred             ---CHH-HHHHhHhhccEEEcCC-----------C----------eEEecC--CCCCChhHHHHHHHHHHHh
Q 015435          361 ---NSE-QVAFMTKEYHIYMTSD-----------G----------RISMAG--LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       361 ---~~~-~~~~~l~~~gi~~~~g-----------g----------Ris~~~--~~~e~i~~~~~~l~~~l~~  405 (407)
                         .+. .+.++-.+.||...--           |          |+++..  .|.+.++.+.++|..+.++
T Consensus       362 ~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~  433 (460)
T PRK13237        362 DQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH  433 (460)
T ss_pred             ccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence               222 2345555577754321           1          887764  3668899999999888754

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.72  E-value=1.4e-15  Score=139.07  Aligned_cols=205  Identities=19%  Similarity=0.134  Sum_probs=150.6

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhc---ccccc-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN---DQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      ..+.+++.+..+.    -+ |.++.+..+....+..   ++... ..|-...+.+..|+.+|+++ +.     ++.+|+|
T Consensus        39 ~~~~~~vyld~~a----t~-p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklI-nA-----d~~dIiF  107 (428)
T KOG1549|consen   39 HHGTRPVYLDNQA----TG-PMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLI-NA-----DPSDIVF  107 (428)
T ss_pred             cCCCccEEEecCc----CC-CCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHh-CC-----CCCcEEE
Confidence            3456777777765    24 6677777776655542   12111 12222344888999999999 43     2467999


Q ss_pred             eecCCcccHHHHHHHHHHhhcCCC----eEEecCCCCCChHHHHh---hcCceeeEEEeecCCCCCcChhhHHHHHHcCC
Q 015435          104 VQCLSGTGSLRVGAEFLARHYHQL----TIYIPQPTWGNHPKVFT---LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP  176 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~~gd----~Vi~~~p~y~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~  176 (407)
                        |+|+|+++.++++-.. +..+|    .|++.+-.|++....++   ..|+.++.+|..  ..+.+|.+.+++.++  +
T Consensus       108 --ts~ATEs~Nlvl~~v~-~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~--~~~~~d~~~~~~~i~--~  180 (428)
T KOG1549|consen  108 --TSGATESNNLVLKGVA-RFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE--DSGLVDISKLREAIR--S  180 (428)
T ss_pred             --eCCchHHHHHHHHHhh-ccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC--ccccccHHHHHHhcC--C
Confidence              9999999999954332 23556    89999999998887666   569999999993  567889999999999  7


Q ss_pred             CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccc
Q 015435          177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMG  256 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~  256 (407)
                      +++++.| ...+|-+|++.+   +++|+++|+++|+.+++|.+++-...   +   ..+..    -+..++..|.+|.||
T Consensus       181 ~T~lv~I-~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQavG~i---~---vDV~e----ln~D~~s~s~HK~yg  246 (428)
T KOG1549|consen  181 KTRLVSI-MHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQAVGKI---P---VDVQE----LNADFLSISAHKIYG  246 (428)
T ss_pred             CceEEEE-EecccCcccccc---HHHHHHHhCcCCcEEEeehhhhcCCc---c---ccHHH----cCchheeeecccccC
Confidence            8888888 788999999765   88888889999999999999652221   1   11211    234577889999999


Q ss_pred             ccCCCcceeE
Q 015435          257 LYGERVGALS  266 (407)
Q Consensus       257 ~~G~r~G~~~  266 (407)
                      .+|  +|+++
T Consensus       247 p~~--iGaLY  254 (428)
T KOG1549|consen  247 PPG--IGALY  254 (428)
T ss_pred             CCc--ceEEE
Confidence            999  89995

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.72  E-value=1.5e-14  Score=130.02  Aligned_cols=344  Identities=14%  Similarity=0.093  Sum_probs=201.5

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcH--HHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLV--DFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~--~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ..+.++||+..++...-.| +..+++.+++.+++.  . ..|...+...++  ++.+.+.+.. ++.    +.+.|.+  
T Consensus        53 ~~g~EyiD~~ssw~~~~~G-hanpev~ral~~q~~--k-~~hs~~~~~t~eav~l~~~l~~~~-~~~----~~~rvff--  121 (433)
T KOG1401|consen   53 PDGKEYIDFTSSWAVTILG-HANPEVARALAEQAK--K-LGHSSNGYFTLEAVELEEVLSAVL-GKG----SAERVFF--  121 (433)
T ss_pred             CCcceeeeeccceeccccC-CCCHHHHHHHHHHHh--h-heeccCccccHHHHHHHHHHHhcc-cCC----CccEEEE--
Confidence            4678999999998866556 556666666666665  2 122222222222  2333333333 322    4589999  


Q ss_pred             cCCcccHHHHHHHHHHhhcCC----C--eEEecCCCCCChHHHHh-hcCceeeEEEeec--CC---CCCcChhhHHHHHH
Q 015435          106 CLSGTGSLRVGAEFLARHYHQ----L--TIYIPQPTWGNHPKVFT-LAGLSVKTYRYYD--PA---TRGLNFQGLLEDLR  173 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~g----d--~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~~~--~~---~~~~d~~~l~~~i~  173 (407)
                      +++||+|++.++++.+...--    +  .+|....+|++....+. ..+......|...  ++   ...-|...+++.++
T Consensus       122 ~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~  201 (433)
T KOG1401|consen  122 CNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFE  201 (433)
T ss_pred             ecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHH
Confidence            999999999998887665421    2  38888888876644333 2233222222210  00   01227899999998


Q ss_pred             cCCC-CcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          174 AAPS-GAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       174 ~~~~-~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                      .+.. ..++++ -.-+-..|.+ ..++.+..|.+.|+++|+++|.||+..+|...+   ..+....+.- ..+   +.++
T Consensus       202 ~h~~~IaAVIv-EPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g---~~~a~e~~~~-~PD---I~t~  273 (433)
T KOG1401|consen  202 SHKGEIAAVIV-EPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLG---YGWAQEYFGV-TPD---ITTV  273 (433)
T ss_pred             hCCCceEEEEE-ecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccc---hHHHHHHhCc-CCc---ceee
Confidence            6643 355555 3334444555 778999999999999999999999999988765   3455444432 222   3347


Q ss_pred             CccccccCCCcceeEEeecChhhHHHHHHHHhhhhh---cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435          252 AKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIR---PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       252 sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  328 (407)
                      .|.++ .|+++|..  ++.     +++.+.++....   ..+++.+++++.++...++... ..   +.++++.+.-...
T Consensus       274 aK~L~-gGlPigA~--~v~-----~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~-~~---e~~k~vs~~~k~L  341 (433)
T KOG1401|consen  274 AKPLG-GGLPIGAT--GVR-----DKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELK-DP---ETLKNVSKIGKEL  341 (433)
T ss_pred             hhhcc-CCceeEEE--eeh-----HHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHc-CH---HHHHHHHHHHHHH
Confidence            89998 78999998  566     556555554433   4566888999998888776321 00   2334444444455


Q ss_pred             HHHHHHHHHhcCCCCCcccccCCceeEEec----CC----CH--H---HHHH---hHhhccEEEcCCCeEEecCCCCCCh
Q 015435          329 RQQLFDALSARGTPGDWSHIIKQIGMFTFT----GL----NS--E---QVAF---MTKEYHIYMTSDGRISMAGLSSKTV  392 (407)
Q Consensus       329 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~----~~----~~--~---~~~~---~l~~~gi~~~~ggRis~~~~~~e~i  392 (407)
                      ++.+.+.+.+.+..  ....... +++...    ++    +.  +   ....   .+.+.|+.+.|-+-++..+ ++|.+
T Consensus       342 ~~~l~e~~~~~~~~--i~g~~gr-gl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~-~~E~i  417 (433)
T KOG1401|consen  342 RKLLDEYLKKTPNS--ICGGVGR-GLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLTVEH-TPEVI  417 (433)
T ss_pred             HHHHHHHhccCCCc--eeeeeee-EEEEEEEEeechhhhhhhhhhhhHHHHHHhcccccceEEEeccccccccC-cHHHH
Confidence            55555555443311  1111111 121111    11    11  1   1111   1112456666633333343 57889


Q ss_pred             hHHHHHHHHHHHhh
Q 015435          393 PHLTDAIHAAVTRM  406 (407)
Q Consensus       393 ~~~~~~l~~~l~~~  406 (407)
                      +++++.+.+.+.++
T Consensus       418 ~~~l~i~~~~l~~~  431 (433)
T KOG1401|consen  418 QRLLTILEKVLSAL  431 (433)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988765

>PRK02769 histidine decarboxylase; Provisional

Probab=99.71  E-value=5.6e-15  Score=138.93  Aligned_cols=291  Identities=16%  Similarity=0.180  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCce--EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEee
Q 015435           79 DFNKLSAKLILGADSPAIKDNRV--TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY  156 (407)
Q Consensus        79 ~l~~~~a~~~~~~~~~~~~~~~i--~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~  156 (407)
                      +.++.+++++ +..     ++++  .+  |+|||+++..+....+.+.+++.|++++..|.+...+++.+|.+.+.++..
T Consensus        69 ~~~~~~a~l~-g~~-----~~~~~G~~--TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~  140 (380)
T PRK02769         69 DVMNFFAELF-KIP-----FNESWGYI--TNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSL  140 (380)
T ss_pred             HHHHHHHHHh-CCC-----CCCCCEEE--ecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccC
Confidence            4455556655 321     2344  77  999999987664333334578899999999999999999999999999883


Q ss_pred             cCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC---ceeeeccccccccCCCCCchhH
Q 015435          157 DPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKG---LLPFFDSAYQGFASGSLDADAQ  233 (407)
Q Consensus       157 ~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~---~~li~D~~y~~~~~~~~~~~~~  233 (407)
                       + ++.+|+++|++.+.+....+.+++.+.++|+||.+   +++++|+++|++||   +++.+|.+++.+...-.+ ...
T Consensus       141 -~-~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~i---dpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~-~~~  214 (380)
T PRK02769        141 -P-NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAI---DNIKEIQEILKKIGIDDYYIHADAALSGMILPFVN-NPP  214 (380)
T ss_pred             -C-CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCccc---CCHHHHHHHHHHhCCCceEEEEEecccceeecccC-ccc
Confidence             3 56799999999998432234444448899999995   45888888899998   699999998775532100 000


Q ss_pred             HHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHH---HHhhhhhcccCCCChhHHHHHHHHhcChhh
Q 015435          234 SVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVES---QLKLVIRPMYSSPPIHGASIVATILKDSTM  310 (407)
Q Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (407)
                      .+. + . .....+..|.+|.++.| ..+|.+  +.+++ ..+.+..   .+.........+.+......+-..|+... 
T Consensus       215 ~~d-~-~-~~vDsis~s~HK~~~~P-~g~G~l--~~r~~-~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg-  286 (380)
T PRK02769        215 PFS-F-A-DGIDSIAISGHKFIGSP-MPCGIV--LAKKK-YVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLG-  286 (380)
T ss_pred             cCC-c-c-CCCCEEEECCcccCCCC-CCcEEE--EEehh-hhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHC-
Confidence            110 1 1 13456778999987633 557888  56632 2222211   00000001111222222222222232211 


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCC---eEEecC-
Q 015435          311 YKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDG---RISMAG-  386 (407)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~gg---Ris~~~-  386 (407)
                          ....++..++..+..+++.+.|++.|.   ..+..|......|...+.+.    .  +|..+.+.+   ||.+.. 
T Consensus       287 ----~~G~~~~~~~~~~la~~l~~~L~~~g~---~~~~~p~~~~v~f~~~~~~~----~--~~w~l~~~~~~~hi~~~~~  353 (380)
T PRK02769        287 ----SKGLRQRVQHCLDMAQYAVDRLQANGI---PAWRNPNSITVVFPCPSERI----W--KKWHLATSGNQAHIITMPH  353 (380)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhCCC---EEEcCCCceEEEEcCCCHHH----H--hCeeEcccCCEEEEEECCC
Confidence                144677788899999999999988773   23445655555554333322    1  345444433   887654 


Q ss_pred             CCCCChhHHHHHHHHHHH
Q 015435          387 LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~  404 (407)
                      ++++.++.+++.|...+.
T Consensus       354 ~~~~~~~~f~~dl~~~~~  371 (380)
T PRK02769        354 HNKQQIDSLIDELIFDLK  371 (380)
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            577788999988887664

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.71  E-value=7.8e-15  Score=141.19  Aligned_cols=344  Identities=12%  Similarity=0.049  Sum_probs=192.5

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHH--HHHHHHhccc---cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVR--KAEQLLVNDQ---SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      .++++||+..|....+.| ..++.+++  ++.+++.+-.   .....| ......++.+.+++.. ...    ..+.+++
T Consensus        43 dG~~ylD~~~g~~~~~lG-h~~p~v~~~~ai~~ql~~l~~~~~~~~~~-~~~~~~~la~~l~~~~-~p~----~~~~v~f  115 (443)
T PRK08297         43 TGRRYLDMFTFFASSALG-MNHPALADDPEFRAELGRAALNKPSNSDV-YTVEMARFVDTFARVL-GDP----ELPHLFF  115 (443)
T ss_pred             CCCEeeecccCHhhhcCC-CCChHHhhHHHHHHHHHHhhhhccccCCc-CCHHHHHHHHHHHhhc-CCC----CCCEEEE
Confidence            578999999987665667 66777877  7777775100   001112 1222333444444433 111    1268999


Q ss_pred             eecCCcccHHHHHHHHHHhhc------CC------CeEEecCCCCCChHHHHhhc-Ccee-----------eEEEeec--
Q 015435          104 VQCLSGTGSLRVGAEFLARHY------HQ------LTIYIPQPTWGNHPKVFTLA-GLSV-----------KTYRYYD--  157 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~------~g------d~Vi~~~p~y~~~~~~~~~~-G~~~-----------~~v~~~~--  157 (407)
                        ++||++|++.++++.....      .|      .+|+...-+|++........ |...           ..++...  
T Consensus       116 --~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (443)
T PRK08297        116 --VDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLR  193 (443)
T ss_pred             --eCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCC
Confidence              9999999999998876541      12      46888888888776544422 2110           0011000  


Q ss_pred             -CC-CCC---------cChhhHHHHHHcCCC-CcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeecccccccc
Q 015435          158 -PA-TRG---------LNFQGLLEDLRAAPS-GAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFA  224 (407)
Q Consensus       158 -~~-~~~---------~d~~~l~~~i~~~~~-~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~  224 (407)
                       +. ...         -+++++++.+.+.++ ..++++-+ .+...|. .++++.+++|.++|++||+++|+||++.+|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EP-i~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfG  272 (443)
T PRK08297        194 FPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEP-IQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVG  272 (443)
T ss_pred             CCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEcc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccC
Confidence             00 000         023555666654433 34555533 2333354 4889999999999999999999999999987


Q ss_pred             CCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHh-hhhhcccCCCChhHHHHHHH
Q 015435          225 SGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLK-LVIRPMYSSPPIHGASIVAT  303 (407)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  303 (407)
                      ..+   ..+....+.- ..+++   .++|.++     +|.+  ++.+ ++.+.....+. ......+++.+++++.++.+
T Consensus       273 RtG---~~~a~~~~gv-~PDiv---~~gK~l~-----~~a~--l~~~-~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a  337 (443)
T PRK08297        273 LTG---TAWAYQQLGV-RPDIV---AFGKKTQ-----VCGI--MAGR-RVDEVEDNVFAVSSRINSTWGGNLVDMVRARR  337 (443)
T ss_pred             ccc---hHHHHHhcCC-CCCEE---Eeccccc-----ccce--ecch-HHHHhhhhhccCccccCCCCCccHHHHHHHHH
Confidence            754   2333333211 22333   3789864     3344  2442 21111101111 11123445678888888877


Q ss_pred             HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcccccCCceeEEecCC-C---HHHHHHhHhhccEEEc
Q 015435          304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG--TPGDWSHIIKQIGMFTFTGL-N---SEQVAFMTKEYHIYMT  377 (407)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~l~~~gi~~~  377 (407)
                      .++-..        -+.+.++.+++.+++.+.|+++.  .+.....+...|.++ .+.+ +   ...+...+.++||.+.
T Consensus       338 ~L~~l~--------~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~-~i~~~~~~~~~~~~~~l~~~Gvl~~  408 (443)
T PRK08297        338 ILEVIE--------EDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMC-AFDLPTTADRDEVIRRLWEEGVLVL  408 (443)
T ss_pred             HHHHHH--------hcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEE-EEEecCHHHHHHHHHHHHHCCEEEe
Confidence            776321        11344555566666666665541  110011233444443 3333 2   2233444456899998


Q ss_pred             CCC----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          378 SDG----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       378 ~gg----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.|    ||+.+- +++++++.++++|.++++++
T Consensus       409 ~~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        409 PCGERSIRFRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             cCCCCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            865    664332 48899999999999999875

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.71  E-value=3.1e-15  Score=143.82  Aligned_cols=328  Identities=16%  Similarity=0.162  Sum_probs=186.4

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCC-CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL-PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++.+++++.+++.  ...  .+. +.....++.+.+++...+       .+.+.+  
T Consensus        44 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~--~~~--~~~~~~~~~~~la~~l~~~~p~-------~~~v~f--  109 (431)
T PRK06209         44 DVDGNEYIEYGMGLRAVGLG-HAYPPVVEAVREALQ--DGC--NFTRPSAIELDAAESFLELIDG-------ADMVKF--  109 (431)
T ss_pred             eCCCCEEEEccccccchhcC-CCCHHHHHHHHHHHH--hCc--CCCCCCHHHHHHHHHHHHhCCc-------cceEEE--
Confidence            45678999999997766677 667788888888886  221  232 222223566677765521       157999  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEec-CCCCCChHHHHh-----hcCce--e--eEEEeecCCCCCcChhhHHHHHHcC
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIP-QPTWGNHPKVFT-----LAGLS--V--KTYRYYDPATRGLNFQGLLEDLRAA  175 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~-~p~y~~~~~~~~-----~~G~~--~--~~v~~~~~~~~~~d~~~l~~~i~~~  175 (407)
                      ++||++|++.++++.+.......|+.. .-+|..+.....     ..|..  .  ..+..  +   --|++++++.+.+.
T Consensus       110 ~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~--~---~~d~~~l~~~l~~~  184 (431)
T PRK06209        110 CKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTF--R---YNDIASLEALFEDH  184 (431)
T ss_pred             ecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhcccccc--C---CCCHHHHHHHHHhC
Confidence            999999999999887766433455554 223322111100     01110  0  01111  1   12788899888644


Q ss_pred             CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      ++..+.++ ..|-  .|...+.+.+++|.++|++||+++|+||++.++....     ........-..+   +.+++|.+
T Consensus       185 ~~~~aavi-~Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-----~g~~~~~gv~PD---i~t~gK~l  253 (431)
T PRK06209        185 PGRIACVI-LEPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-----RGAQKLYGIVPD---LSCFGKAL  253 (431)
T ss_pred             CCCEEEEE-Eccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-----chhhHHhCCCcc---eeeehhhh
Confidence            33333333 2332  4557789999999999999999999999988775421     111111111122   25589999


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHH--Hh------hhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQ--LK------LVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIIS  327 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  327 (407)
                      | .|+.+|++  +++     +++.+.  +.      .+....+.+++++++.++.+.|+...      +  +...+++++
T Consensus       254 g-gG~p~~av--~~~-----~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~------~--~~~~~~~~~  317 (431)
T PRK06209        254 G-NGFAVSAL--AGK-----REYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYR------D--EDVIERLHE  317 (431)
T ss_pred             c-CCcccEEE--EEH-----HHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHh------c--cCHHHHHHH
Confidence            8 67888988  454     334433  10      11112233556677777766665321      1  123445555


Q ss_pred             HHHHHHHHHHh----cCCCCCcccccCCceeEE--ec--C---C-CHH---HHHHhHhhccEEEcCCCeEEecCCCCCCh
Q 015435          328 MRQQLFDALSA----RGTPGDWSHIIKQIGMFT--FT--G---L-NSE---QVAFMTKEYHIYMTSDGRISMAGLSSKTV  392 (407)
Q Consensus       328 ~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~--~~--~---~-~~~---~~~~~l~~~gi~~~~ggRis~~~~~~e~i  392 (407)
                      +.+++.+.|++    .+..   ......|..+.  ++  +   . ...   .+...+.++|+.+.| -+|+.. ++++++
T Consensus       318 ~g~~l~~~L~~~~~~~~~~---~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~-l~is~~-ht~~dI  392 (431)
T PRK06209        318 QGAKLAAGVNEAAAEHGLQ---DHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS-LVVSYA-HGDADI  392 (431)
T ss_pred             HHHHHHHHHHHHHHhCCCC---eEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc-cccccc-CCHHHH
Confidence            55555555544    3321   11111222221  11  1   1 111   233444557997743 256654 489999


Q ss_pred             hHHHHHHHHHHHh
Q 015435          393 PHLTDAIHAAVTR  405 (407)
Q Consensus       393 ~~~~~~l~~~l~~  405 (407)
                      +++++++.+++++
T Consensus       393 d~~l~~l~~~l~~  405 (431)
T PRK06209        393 ERTIDAVHGALGV  405 (431)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998865

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.70  E-value=2.5e-15  Score=133.98  Aligned_cols=344  Identities=16%  Similarity=0.125  Sum_probs=214.1

Q ss_pred             hhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCc
Q 015435           21 VTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNR  100 (407)
Q Consensus        21 ~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~  100 (407)
                      .++.+-..+++.++|+..|+...+.| ...++++.++.+++..-.-....|.. .-..++.++++..+.+..      +-
T Consensus        40 ~~~ylyDe~G~ryLD~f~Gi~tvslG-HchP~v~~a~~kQl~~l~H~t~~~~~-~pi~~~Ae~L~s~~P~~l------~~  111 (442)
T KOG1404|consen   40 EGQYLYDEEGRRYLDAFGGIVTVSLG-HCHPDVVAAAVKQLKKLYHTTSGYLN-PPIHDLAEALVSKLPGDL------KV  111 (442)
T ss_pred             ceEEEEcCCCceeehhhCCeEEEEcC-CCChHHHHHHHHhhhhhEEeeccccC-CcHHHHHHHHHHhCCCCc------eE
Confidence            33433356789999999999988888 88889999998888511112234533 346688888888884432      56


Q ss_pred             eEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCceeeEEEe------------ecCCCC--CcC-
Q 015435          101 VTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLSVKTYRY------------YDPATR--GLN-  164 (407)
Q Consensus       101 i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~------------~~~~~~--~~d-  164 (407)
                      ++|  ++||++|++++.++.+.....-.+|....+|.+...... .-|......+.            .++..+  +-+ 
T Consensus       112 vfF--~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~  189 (442)
T KOG1404|consen  112 VFF--VNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSN  189 (442)
T ss_pred             EEE--ecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCc
Confidence            888  999999999998777665554567777777766544333 32332222211            111100  001 


Q ss_pred             --------hhhHHHHHHc-CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435          165 --------FQGLLEDLRA-APSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS  234 (407)
Q Consensus       165 --------~~~l~~~i~~-~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~  234 (407)
                              .+++++.+.. .+++.+.++.-+-+--.|++ +++-.+++..++|+++|.++|.||+..+|+..+   ..|+
T Consensus       190 ~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG---~~wg  266 (442)
T KOG1404|consen  190 EEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG---HMWG  266 (442)
T ss_pred             hhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc---cccc
Confidence                    2344444432 35555666633334444555 889999999999999999999999999999876   3444


Q ss_pred             HHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh-hcccCCCChhHHHHHHHHhcChhhHHh
Q 015435          235 VRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI-RPMYSSPPIHGASIVATILKDSTMYKE  313 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  313 (407)
                      +..    .+-+==+-|++|.+| .|+++|.+  ++. ++    +.+.+.... ...+.+.+++++.+..++|+-..    
T Consensus       267 fe~----h~v~PDIvTmAKgiG-nG~Pl~AV--vtt-~E----Ia~v~~~~~~~fnTyggnP~a~avg~aVL~Vik----  330 (442)
T KOG1404|consen  267 FES----HGVVPDIVTMAKGIG-NGFPLGAV--VTT-PE----IADVLNQKSSHFNTYGGNPVACAVGLAVLKVIK----  330 (442)
T ss_pred             ccc----cCCCccHHHHHhhcc-CCCcceee--ecC-HH----HHHHHHhccccccccCCCchhHHHHHHHHHHHH----
Confidence            322    222222447999999 78999999  565 44    444444333 33455778888888877776321    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC--CceeEEecCC----------C-H--HHHHHhHhhccEEEcC
Q 015435          314 WTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK--QIGMFTFTGL----------N-S--EQVAFMTKEYHIYMTS  378 (407)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~----------~-~--~~~~~~l~~~gi~~~~  378 (407)
                          -+++.++..+...+|.+.|.++.-.  .+.+..  .-|++.=+.+          . .  -.+.+-++++|+.+..
T Consensus       331 ----ee~LqE~aa~vG~yl~~~l~~l~d~--h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~  404 (442)
T KOG1404|consen  331 ----EENLQENAAEVGSYLLEKLAALKDK--HPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGK  404 (442)
T ss_pred             ----HHhHHHHHHHHHHHHHHHHHHHhhc--CCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeec
Confidence                2345566667777888877765311  222221  1222221211          1 1  1344666779999977


Q ss_pred             CC------eEEecC-CCCCChhHHHHHH
Q 015435          379 DG------RISMAG-LSSKTVPHLTDAI  399 (407)
Q Consensus       379 gg------Ris~~~-~~~e~i~~~~~~l  399 (407)
                      ||      ||+..- +++||++-+++..
T Consensus       405 g~i~G~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  405 GGIHGNVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             ccccceEEEecCCeeccHHHHHHHHHHH
Confidence            75      886432 5889996666644

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.70  E-value=2.2e-14  Score=124.16  Aligned_cols=321  Identities=13%  Similarity=0.149  Sum_probs=200.0

Q ss_pred             cccchhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH  125 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~  125 (407)
                      |.|.....++++++. .+ .....+|  .+-.+++++-+...+ ...+.    .-.++  ..+|+.+++.+  +...+.|
T Consensus        23 PGPsnl~~~V~~A~~-~~-~lgh~sPe~~qIm~~v~egikyVF-kT~n~----~tf~i--sgsGh~g~E~a--l~N~leP   91 (385)
T KOG2862|consen   23 PGPSNLSGRVQEAMS-RP-SLGHMSPEFVQIMDEVLEGIKYVF-KTANA----QTFVI--SGSGHSGWEAA--LVNLLEP   91 (385)
T ss_pred             CCCcCCCHHHHHhhc-CC-ccccCCHHHHHHHHHHHHHHHHHh-ccCCC----ceEEE--ecCCcchHHHH--HHhhcCC
Confidence            666666677777775 22 2222233  122445555555544 33221    34555  77889999999  4666889


Q ss_pred             CCeEEecCCC-C-CChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHH-HHH
Q 015435          126 QLTIYIPQPT-W-GNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQ-WEQ  202 (407)
Q Consensus       126 gd~Vi~~~p~-y-~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~-l~~  202 (407)
                      ||+|++.... | ..+.+..++.|++|..++.  +.+....++++.+++..+ +..++++ ++....||+.   .+ +..
T Consensus        92 gd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~--~~G~~~~le~i~~~lsqh-~p~~vfv-~hgdsSTgV~---q~~~~~  164 (385)
T KOG2862|consen   92 GDNVLVVSTGTWGQRAADCARRYGAEVDVVEA--DIGQAVPLEEITEKLSQH-KPKAVFV-THGDSSTGVL---QDLLAI  164 (385)
T ss_pred             CCeEEEEEechHHHHHHHHHHhhCceeeEEec--CcccCccHHHHHHHHHhc-CCceEEE-EecCcccccc---chHHHH
Confidence            9999888754 3 3456788899999999977  677899999999999853 3455555 6777788884   34 667


Q ss_pred             HHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH
Q 015435          203 IRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL  282 (407)
Q Consensus       203 i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~  282 (407)
                      +-++|++|+.++++|.+- .++..+...|.|        +-++.+ .+--|.++.|. .++-+   +.++...+++.++-
T Consensus       165 ~g~lc~k~~~lllVD~Va-Slggt~F~mDew--------gVDvay-tgSQKaL~aP~-GLsii---sfS~ka~~~~~~rK  230 (385)
T KOG2862|consen  165 SGELCHKHEALLLVDTVA-SLGGTEFEMDEW--------GVDVAY-TGSQKALGAPA-GLSII---SFSDKALEAIRDRK  230 (385)
T ss_pred             HHHHhhcCCeEEEEechh-hcCCccceehhh--------cccEEE-ecchhhcCCCC-Cccee---ecCHHHHHHHhhcc
Confidence            778899999999999974 344333322222        223444 44478887541 23334   66666555554433


Q ss_pred             hhhh-------------------hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015435          283 KLVI-------------------RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG  343 (407)
Q Consensus       283 ~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  343 (407)
                      .+..                   +.+.-++|....+.+..+|...     +++.+++..++++++.+.+...+++.|...
T Consensus       231 ~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I-----~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~  305 (385)
T KOG2862|consen  231 TKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALI-----AEEGLENSWRRHREMSKWLKLSLEALGLQL  305 (385)
T ss_pred             CCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            2110                   1122245555555555555532     246789999999999999999999988321


Q ss_pred             Cc---ccccCC-ceeEEecCCCHHHH-HHhHhhccEEEcCC-----C---eEEecC--CCCCChhHHHHHHHHHHHh
Q 015435          344 DW---SHIIKQ-IGMFTFTGLNSEQV-AFMTKEYHIYMTSD-----G---RISMAG--LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       344 ~~---~~~~~~-~~~~~~~~~~~~~~-~~~l~~~gi~~~~g-----g---Ris~~~--~~~e~i~~~~~~l~~~l~~  405 (407)
                      ..   ....|. .+.-+-.+.|+..+ .++..++++.+..|     |   ||.+.+  .+.+.++..++.|+..+.+
T Consensus       306 fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  306 FVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             eecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence            01   111121 11111225677665 55666556666554     2   997654  3568889999988888765

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.70  E-value=8.1e-15  Score=139.75  Aligned_cols=287  Identities=12%  Similarity=0.084  Sum_probs=179.2

Q ss_pred             ceEEeecCCcccHHHHHHHHHHhh------cCC-----CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhH
Q 015435          100 RVTTVQCLSGTGSLRVGAEFLARH------YHQ-----LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGL  168 (407)
Q Consensus       100 ~i~~~~t~g~t~a~~~~~~~~~~~------~~g-----d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l  168 (407)
                      ++.+..|+|||+|+.+++......      ..|     ..|++++-.|.++.+.++..|++++.+|.+ +.++.+|+++|
T Consensus       101 ~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d-~~~~~vd~~~L  179 (431)
T TIGR01788       101 EAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMD-PGRYVIDPEQV  179 (431)
T ss_pred             CCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecC-CCceeeCHHHH
Confidence            454422799999999885333211      112     368888899999999999999999999983 43357999999


Q ss_pred             HHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc------CceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          169 LEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK------GLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       169 ~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~------~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      ++.+.  +++.+|++ ...+|.||.+   +++++|+++|+++      |+++.+|.+|+++... ........ .+ ...
T Consensus       180 ~~~i~--~~t~lV~~-t~g~t~tG~i---dpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p-~~~~~~~~-~~-~~~  250 (431)
T TIGR01788       180 VEAVD--ENTIGVVC-ILGTTYTGEY---EDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAP-FVYPDLEW-DF-RLP  250 (431)
T ss_pred             HHHHh--hCCeEEEE-EeCCCCCccc---CCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHH-HhCCCchh-hc-CCC
Confidence            99998  55666555 7899999994   5688888889999      9999999999854410 00000111 01 112


Q ss_pred             CcEEEEEecCccc-cccCCCcceeEEeecChhhH-HHHHH---HHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHH
Q 015435          243 GECLVAQSYAKNM-GLYGERVGALSIVCKTEDVA-SRVES---QLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLE  317 (407)
Q Consensus       243 ~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  317 (407)
                      .-..+..|.+|.+ +..  .+|.+  ++++++.. +.+..   .+...........+..+..++..++.   +...-...
T Consensus       251 ~~DSis~s~HK~~~~P~--g~G~l--~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~---l~~lG~~G  323 (431)
T TIGR01788       251 RVKSINVSGHKYGLVYP--GVGWV--IWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYN---FLRLGREG  323 (431)
T ss_pred             CceEEEECchhccCCCC--CcEEE--EEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHH---HHHhcHHH
Confidence            3345778899975 444  47888  56654311 11100   11000000111112222111211211   00001145


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--CCceeEEec--C-----CCHHHHHHhHhhccEEE----cCC---C-
Q 015435          318 LKAMADRIISMRQQLFDALSARGTPGDWSHII--KQIGMFTFT--G-----LNSEQVAFMTKEYHIYM----TSD---G-  380 (407)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~--~-----~~~~~~~~~l~~~gi~~----~~g---g-  380 (407)
                      .++..++..++.+++.+.|++.+.   +++..  +..+.+.|.  +     .+...+.+.|.++|+.+    .|.   | 
T Consensus       324 ~~~i~~~~~~la~~l~~~L~~~~~---~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~  400 (431)
T TIGR01788       324 YRKIMQNSLDVARYLAEEIAKLGP---FEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDI  400 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCC---EEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCe
Confidence            677778888999999999998864   66554  356666554  2     34455666777789864    332   3 


Q ss_pred             ---eEEec-CCCCCChhHHHHHHHHHHHhh
Q 015435          381 ---RISMA-GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 ---Ris~~-~~~~e~i~~~~~~l~~~l~~~  406 (407)
                         |+++. +++++.++.+++.|+.++..+
T Consensus       401 ~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       401 VVMRIVVREGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence               88775 357788999999999988765

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.69  E-value=2.4e-14  Score=130.76  Aligned_cols=277  Identities=17%  Similarity=0.181  Sum_probs=183.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCceee
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGLSVK  151 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~~~~  151 (407)
                      ....+.+.+++.. +.       .+.++  .+||..|+..+.  ...+.+|+.+++.+..|.+....++    .+|+...
T Consensus        78 t~~~le~~iaal~-ga-------~~~l~--fsSGmaA~~~al--~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~  145 (409)
T KOG0053|consen   78 TRDVLESGIAALE-GA-------AHALL--FSSGMAAITVAL--LHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGD  145 (409)
T ss_pred             chHHHHHHHHHHh-CC-------ceEEE--ecccHHHHHHHH--HHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceee
Confidence            3455666677766 43       56878  999999999984  5557899999999999998887766    5677777


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      .++.       -+++++++++.  +++.++++ -+|.||+..+.   |+++|+++|+++|+++|+|+.+.....-    +
T Consensus       146 ~vd~-------~~~~~~~~~i~--~~t~~V~~-ESPsNPll~v~---DI~~l~~la~~~g~~vvVDnTf~~p~~~----~  208 (409)
T KOG0053|consen  146 FVDV-------DDLKKILKAIK--ENTKAVFL-ESPSNPLLKVP---DIEKLARLAHKYGFLVVVDNTFGSPYNQ----D  208 (409)
T ss_pred             eech-------hhHHHHHHhhc--cCceEEEE-ECCCCCccccc---cHHHHHHHHhhCCCEEEEeCCcCccccc----C
Confidence            7755       37788888888  67899888 89999999965   6888888899999999999998766432    1


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhH
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMY  311 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  311 (407)
                      +.+       ....|++.|.+|.++..+-=+|.++ +..+++    +.+++...+....+++++..+....+-++...  
T Consensus       209 pL~-------lGADIV~hSaTKyi~Ghsdvi~G~i-v~n~~~----~~~~l~~~~~~lg~~~~p~~~~ll~Rglktl~--  274 (409)
T KOG0053|consen  209 PLP-------LGADIVVHSATKYIGGHSDVIGGSV-VLNSEE----LASRLKFLQEDLGWCEDPFDLFLLSRGLKTLH--  274 (409)
T ss_pred             hhh-------cCCCEEEEeeeeeecCCcceeeeEE-ecCcHH----HHHHHHHHHHHhcCCCCHHHHHHHhcCcchhh--
Confidence            111       2357999999999986666566652 343455    44445545555556777776666655544332  


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Cccc----c-cCCceeEEecCCCHHHHHHhHhhccEE
Q 015435          312 KEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSH----I-IKQIGMFTFTGLNSEQVAFMTKEYHIY  375 (407)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~----~-~~~~~~~~~~~~~~~~~~~~l~~~gi~  375 (407)
                              .+.++..++...+.+.|+..+.      |.     .++.    . ...|+.+..+..+.+...++.++-.+.
T Consensus       275 --------lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~~~~~a~kf~~~LK~~  346 (409)
T KOG0053|consen  275 --------LRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFGNEEHAKKFYDALKLF  346 (409)
T ss_pred             --------hhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcCCHHHHHHHHHhhhhh
Confidence                    2223334444445555554421      10     0000    0 113444555555555555555544444


Q ss_pred             -EcC--C------------------------C------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          376 -MTS--D------------------------G------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       376 -~~~--g------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                       ..+  |                        |      |+|++ +  |+++.+++-+.++++..
T Consensus       347 ~~a~SlG~~eSL~~~p~~mth~~~~e~~~~~Gi~~~LVRvSVG-i--Ed~~dL~~d~~~Al~~~  407 (409)
T KOG0053|consen  347 TKAPSLGGNESLAEPPAIMTHASELEEREKFGIDPNLVRVSVG-I--EDIEDLIKDFQQALEKA  407 (409)
T ss_pred             hcccCcCccchhhcchhhhccCCCHHHHHhcCCCCCcEEEEec-c--CCHHHHHHHHHHHHHhh
Confidence             222  1                        1      99988 3  88999999999988754

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.69  E-value=9.2e-16  Score=128.71  Aligned_cols=165  Identities=25%  Similarity=0.274  Sum_probs=120.6

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH-HHHhhcCceeeEEEe
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP-KVFTLAGLSVKTYRY  155 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~-~~~~~~G~~~~~v~~  155 (407)
                      +.++++.+++++ +     .+.+++.+  ++|+|+++.++.  .....++++|+++.+.|++.. ..+...|.+++.++.
T Consensus         2 ~~~~~~~l~~~~-~-----~~~~~~~~--~~~~t~a~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~   71 (170)
T cd01494           2 LEELEEKLARLL-Q-----PGNDKAVF--VPSGTGANEAAL--LALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPV   71 (170)
T ss_pred             HHHHHHHHHHHc-C-----CCCCcEEE--eCCcHHHHHHHH--HHhCCCCCEEEEeecccceehhhHHHhcCCEEEEecc
Confidence            467899999988 3     22478999  999999999995  333567999999999999998 888899999999988


Q ss_pred             ecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH
Q 015435          156 YDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV  235 (407)
Q Consensus       156 ~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~  235 (407)
                      .+......+.+.+++... .+++.++++ ++++||+|...+.   ++|+++|+++|+++|+|++|..+......   .. 
T Consensus        72 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~-~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~---~~-  142 (170)
T cd01494          72 DDAGYGGLDVAILEELKA-KPNVALIVI-TPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPG---VL-  142 (170)
T ss_pred             CCCCccchhhhhhhhccc-cCceEEEEE-ecCcCCCCeEcCH---HHHHHHHHHcCCEEEEecccccccccccc---cc-
Confidence            432222223334544332 234455544 8999999997764   78888899999999999999887764211   00 


Q ss_pred             HHHHHcCCcEEEEEecCccccccCCCccee
Q 015435          236 RMFVADGGECLVAQSYAKNMGLYGERVGAL  265 (407)
Q Consensus       236 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  265 (407)
                         .......+++.|++|.++.  .++|++
T Consensus       143 ---~~~~~~d~~~~s~~K~~~~--~~~G~l  167 (170)
T cd01494         143 ---IPEGGADVVTFSLHKNLGG--EGGGVV  167 (170)
T ss_pred             ---cccccCCEEEEEcccccCC--CceEEE
Confidence               1223456888999999974  678988

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.68  E-value=5.5e-15  Score=143.31  Aligned_cols=330  Identities=17%  Similarity=0.168  Sum_probs=191.1

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccc--cc-cccCCC-CC---CcHH-HHHHHHHHHhCCCCCCCCCCceE
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ--SR-VKEYLP-IV---GLVD-FNKLSAKLILGADSPAIKDNRVT  102 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~y~~-~~---g~~~-l~~~~a~~~~~~~~~~~~~~~i~  102 (407)
                      ++-|+|-.+.    +  ..++.+.+.....+.+..  .. ...|.. ..   -+++ .|+.+++++ +.     +++++.
T Consensus        34 ~~~l~l~~se----n--~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf-~a-----~~~~~~  101 (452)
T PTZ00094         34 IEGLELIASE----N--FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAF-GL-----DPEEWG  101 (452)
T ss_pred             HcCeeEeccc----c--cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHh-CC-----Ccccce
Confidence            6788888664    2  444455555545453111  00 011111 11   1332 456777777 42     235565


Q ss_pred             E-eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhh----------cCceeeEEEeecCCCCCcChhhHHHH
Q 015435          103 T-VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTL----------AGLSVKTYRYYDPATRGLNFQGLLED  171 (407)
Q Consensus       103 ~-~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~----------~G~~~~~v~~~~~~~~~~d~~~l~~~  171 (407)
                      + ++++||++++.+++  ...+++||+|++....+..+......          .+.++..++.+ . ++.+|++++++.
T Consensus       102 ~~~~~~sgt~an~~v~--~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~-~g~id~~~L~~~  177 (452)
T PTZ00094        102 VNVQPYSGSPANFAVY--TALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN-E-KGLIDYDKLEEL  177 (452)
T ss_pred             eecCCCchHHHHHHHH--HHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC-C-CCCcCHHHHHHH
Confidence            5 11278999999974  44578999999988777666443321          12334455552 2 378999999999


Q ss_pred             HHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          172 LRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       172 i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                      +.+. +++++++ .  ++.+|+..+   +++|.++|+++|+++++|+++...... .  +..+.    ......++++|.
T Consensus       178 l~~~-~~~lvi~-~--~s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~-~--~~~~~----~~~~~D~l~~S~  243 (452)
T PTZ00094        178 AKAF-RPKLIIA-G--ASAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVA-A--GVLPS----PFPYADVVTTTT  243 (452)
T ss_pred             HHHh-CCCEEEE-e--CCCCCCccC---HHHHHHHHHHcCCEEEEeccchhcccc-C--CCCCC----CCCCCcEEEcCC
Confidence            9632 3445544 3  344888554   777778899999999999997543322 1  11100    011345889999


Q ss_pred             CccccccCCCcceeEEeecChhhHHHHHHHHhhhhhc-ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 015435          252 AKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRP-MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQ  330 (407)
Q Consensus       252 sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  330 (407)
                      +|.++  |.+.|++  ++. ++..+.+.........+ ...+++.....++..+++...     ....++.++++.++++
T Consensus       244 hK~l~--GP~Gg~l--~~~-~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~-----~~~~~~~~~~i~~l~~  313 (452)
T PTZ00094        244 HKSLR--GPRSGLI--FYR-KKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQ-----SPEWKEYAKQVLKNAK  313 (452)
T ss_pred             ccCCC--CCCceEE--EEe-cccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHh-----ChhHHHHHHHHHHHHH
Confidence            99774  3333666  454 33333343333222111 112344444444444443221     1234567788899999


Q ss_pred             HHHHHHHhcCCCCCcccccC----CceeEEe--cCCCHHHHHHhHhhccEEEcC------------CC-eEEecCC----
Q 015435          331 QLFDALSARGTPGDWSHIIK----QIGMFTF--TGLNSEQVAFMTKEYHIYMTS------------DG-RISMAGL----  387 (407)
Q Consensus       331 ~l~~~l~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~l~~~gi~~~~------------gg-Ris~~~~----  387 (407)
                      ++.+.|++.|    +.+..+    ....+.+  .+.+.+.+...|+++||.+..            ++ |+++...    
T Consensus       314 ~l~~~L~~~g----~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g  389 (452)
T PTZ00094        314 ALAAALEKRG----YDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRG  389 (452)
T ss_pred             HHHHHHHhCC----cEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCC
Confidence            9999998776    443321    1111111  144667788888889999942            22 8876432    


Q ss_pred             -CCCChhHHHHHHHHHHH
Q 015435          388 -SSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       388 -~~e~i~~~~~~l~~~l~  404 (407)
                       +++|++++++.|+++++
T Consensus       390 ~~~~di~~l~~~l~~~~~  407 (452)
T PTZ00094        390 AKEKDFKFVADFLDRAVK  407 (452)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence             47999999999999886

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.68  E-value=4.3e-14  Score=132.88  Aligned_cols=272  Identities=17%  Similarity=0.158  Sum_probs=170.9

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH----HHHhhcCcee
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP----KVFTLAGLSV  150 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~----~~~~~~G~~~  150 (407)
                      +...+|.+.++++. +.       +..+.  +++|+.|+.+++  ...+.+||+|+++.+.|.+..    ..+...|+++
T Consensus        64 P~~~~lE~~la~le-g~-------~~av~--~sSG~aAi~~al--~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v  131 (384)
T PRK06434         64 PTVQAFEEKYAVLE-NA-------EHALS--FSSGMGAITSAI--LSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHV  131 (384)
T ss_pred             hhHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEE
Confidence            34677888888887 43       56777  999999999984  555889999999988776665    4556789999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++.++.+.  ++       +. .++++++++ ..|.|||+.+   .|+++|+++|++++  +++|.++......    
T Consensus       132 ~fvd~~~~~~--~~-------l~-~~~tklv~~-e~~snpt~~v---~Di~~I~~la~~~~--lvVD~t~~s~~~~----  191 (384)
T PRK06434        132 DYIDTDRLNS--LD-------FD-PSNYDLIYA-ESITNPTLKV---PDIKNVSSFCHEND--VIVDATFASPYNQ----  191 (384)
T ss_pred             EEECCCChhh--ee-------ec-CCCeeEEEE-EcCCCCCcee---ecHHHHHHHHHHcC--eEEECCCCCcccC----
Confidence            9998732222  22       12 124677767 8899999985   47999999999998  4569996422211    


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                        .++    . ....++++|.+|.++.+|--+ |.+  ++.++++.++++.    .........+.........-|+   
T Consensus       192 --~pl----~-~gaDivv~S~tK~i~G~~d~~gG~v--v~~~~~~~~~~~~----~~~~~G~~~~~~~A~l~~~gL~---  255 (384)
T PRK06434        192 --NPL----D-LGADVVIHSATKYISGHSDVVMGVA--GTNNKSIFNNLVE----RRKTLGSNPDPIQAYLALRGLK---  255 (384)
T ss_pred             --Cch----h-cCCCEEEeecccccCCCCCceEEEE--ecCcHHHHHHHHH----HHHhcCCCCCHHHHHHHHhCCC---
Confidence              111    1 235688899999997655333 445  5666665554432    2112222334433333333333   


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---------ccCCceeEEecCCCHHHHHHhHhhccEEE-cC-
Q 015435          310 MYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH---------IIKQIGMFTFTGLNSEQVAFMTKEYHIYM-TS-  378 (407)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~gi~~-~~-  378 (407)
                             .++.+.++..++...+.+.|+..+.-..+.+         ....||++.+.--+.+.+.++++...+.. .+ 
T Consensus       256 -------tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~l~~~~~s  328 (384)
T PRK06434        256 -------TLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRSMEDVHKFIRNLEIPMVAAS  328 (384)
T ss_pred             -------cHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECCHHHHHHHHHhCCcceEccC
Confidence                   2456667777888888888887652000000         11246666654114555666666544432 11 


Q ss_pred             -C-------------------------C------eEEecCCCCCChhHHHHHHHHHHH
Q 015435          379 -D-------------------------G------RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       379 -g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                       |                         |      |||++-   |+.+.+++-|.++|+
T Consensus       329 lG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGl---Ed~~dLi~dl~~Al~  383 (384)
T PRK06434        329 LGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIGI---EDIDDLIKDIENALS  383 (384)
T ss_pred             CCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeCc---CCHHHHHHHHHHHhc
Confidence             1                         1      888873   889999999999875

>PLN02271 serine hydroxymethyltransferase

Probab=99.67  E-value=5e-14  Score=134.37  Aligned_cols=270  Identities=19%  Similarity=0.177  Sum_probs=168.6

Q ss_pred             eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH---------hhcCceeeEEE--eecCCCCCcChhhHHHHH
Q 015435          104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF---------TLAGLSVKTYR--YYDPATRGLNFQGLLEDL  172 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~---------~~~G~~~~~v~--~~~~~~~~~d~~~l~~~i  172 (407)
                      ++..||+.|+.++  +...+.|||+|+..+..+.++....         ...|..+..++  + ++.++.+|.+++++..
T Consensus       218 VQp~SGs~AN~aV--~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~-d~~~g~IDyd~lek~a  294 (586)
T PLN02271        218 VQPYSCTSANFAV--YTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKV-NPQTGYIDYDKLEEKA  294 (586)
T ss_pred             eeeccHHHHHHHH--HHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccc-ccccCccCHHHHHHHh
Confidence            3356888999888  4666899999999988777775532         33454444444  5 3456789999999955


Q ss_pred             HcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc-cccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          173 RAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ-GFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       173 ~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                      .. .++++|++ ..-.||.     .-++++|+++|+++|+++++|.++. ++...+..+   +     +.....++.+|.
T Consensus       295 ~~-~rPKLII~-g~Saypr-----~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~---s-----P~~~aDvvt~TT  359 (586)
T PLN02271        295 LD-FRPKILIC-GGSSYPR-----EWDYARFRQIADKCGAVLMCDMAHISGLVAAKECV---N-----PFDYCDIVTSTT  359 (586)
T ss_pred             hh-cCCeEEEE-CchhccC-----cCCHHHHHHHHHHcCCEEEEECcccccccccCcCC---C-----CCcCCcEEEeCC
Confidence            42 45566555 5556773     2367888888999999999999974 444332100   0     111245888999


Q ss_pred             CccccccCCCcceeEEeecCh---------------hhHHHHHHHHhhhhhcccCCCChhHHH-HHHHHhcChhhHHhHH
Q 015435          252 AKNMGLYGERVGALSIVCKTE---------------DVASRVESQLKLVIRPMYSSPPIHGAS-IVATILKDSTMYKEWT  315 (407)
Q Consensus       252 sK~~~~~G~r~G~~~~v~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~  315 (407)
                      +|++  .|-|-|.+  ++.+.               +....+.+++.....+...+.+..... +....+....     .
T Consensus       360 HKtL--rGPrGG~I--~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~-----~  430 (586)
T PLN02271        360 HKSL--RGPRGGII--FYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVA-----T  430 (586)
T ss_pred             cccC--CCCCceEE--EecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHh-----C
Confidence            9986  56776777  45421               011124444444443332233322222 2222232110     1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCc-eeEEec-----CCCHHHHHHhHhhccEEEcC-----------
Q 015435          316 LELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQI-GMFTFT-----GLNSEQVAFMTKEYHIYMTS-----------  378 (407)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~l~~~gi~~~~-----------  378 (407)
                      ...++..+++.+|.+.|.+.|.+.|    +.+..... +-.+++     +++...+.+.|++.||.+..           
T Consensus       431 ~efk~Ya~QVv~NAkaLA~~L~~~G----~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~  506 (586)
T PLN02271        431 PEYKAYMQQVKKNAQALASALLRRK----CRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTIS  506 (586)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHCC----CeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCC
Confidence            2235666778889999999999988    55543222 222344     34678899999999998843           


Q ss_pred             -CC-eEEec-----CCCCCChhHHHHHHHHHHH
Q 015435          379 -DG-RISMA-----GLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       379 -gg-Ris~~-----~~~~e~i~~~~~~l~~~l~  404 (407)
                       +| ||...     +..++|++++.+.|.++++
T Consensus       507 psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        507 PGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             CCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence             34 88532     2567889998888888775

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.67  E-value=1.4e-14  Score=124.33  Aligned_cols=326  Identities=15%  Similarity=0.136  Sum_probs=197.2

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCC----cHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVG----LVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g----~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++||+.+.+   .|....++++++...++.+-.....+-.-..|    +..|...+|++- ++       ++.++  
T Consensus        66 ~k~ilnFcaNnY---LGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh-~r-------ED~il--  132 (417)
T KOG1359|consen   66 DKKILNFCANNY---LGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFH-GR-------EDTIL--  132 (417)
T ss_pred             ccceeeeccccc---ccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHh-CC-------CceEE--
Confidence            468999998887   67666778888888777621100110001223    455566677755 43       66777  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC-CcEEEEe
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS-GAIVLLH  184 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~-~~~v~i~  184 (407)
                      .+++-.|+..++  -..+.|.|.|+-....+.+..+.++.+.    .+       .-+|+..++..+.+..+ +..++++
T Consensus       133 ypscfdANag~f--eail~pedAvfSDeLNhASIIdGirLck----ry-------~h~dv~~l~~~l~~a~k~r~klv~T  199 (417)
T KOG1359|consen  133 YPSCFDANAGAF--EAILTPEDAVFSDELNHASIIDGIRLCK----RY-------RHVDVFDLEHCLISACKMRLKLVVT  199 (417)
T ss_pred             eccccccchHHH--HHhcChhhhhhccccccchhhhhhHHHh----hh-------ccchhHHHHHHHHHhhhheEEEEEe
Confidence            777777776663  4447788888888888888888877763    11       22566677766553322 3334443


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcce
Q 015435          185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGA  264 (407)
Q Consensus       185 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  264 (407)
                      ...-.-.|-   ...+++|+++++|||.++++||+++.+.++.-  ..-.-..+.-+++..++..+++|++|  |---||
T Consensus       200 Dg~FSMDGd---iaPl~ei~~La~kYgaLlfiDecHaTgf~G~t--GrGt~E~~~vm~~vdiinsTLgKAlG--ga~GGy  272 (417)
T KOG1359|consen  200 DGVFSMDGD---IAPLEEISQLAKKYGALLFIDECHATGFFGET--GRGTAEEFGVMGDVDIINSTLGKALG--GASGGY  272 (417)
T ss_pred             cceeccCCC---cccHHHHHHHHHhcCcEEEEeecccceeecCC--CCChHHHhCCCCcceehhhhhhhhhc--CCCCCC
Confidence            333344555   44588899999999999999999987766531  11122233445678899999999987  334488


Q ss_pred             eEEeecChhhHHHHHHHHhhhhhcccCCCChhH-HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015435          265 LSIVCKTEDVASRVESQLKLVIRPMYSSPPIHG-ASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG  343 (407)
Q Consensus       265 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  343 (407)
                      .   +.+..+..-+..+-+.+.   ++++-+++ ...+.++++..       -.-.+..++.+.+.+.+++.++..|   
T Consensus       273 t---tgp~~li~llrqr~Rpyl---FSnslppavV~~a~ka~dll-------m~s~~~i~~~~a~~qrfr~~me~aG---  336 (417)
T KOG1359|consen  273 T---TGPKPLISLLRQRSRPYL---FSNSLPPAVVGMAAKAYDLL-------MVSSKEIQSRQANTQRFREFMEAAG---  336 (417)
T ss_pred             c---cCChhHHHHHHhcCCcee---ecCCCChhhhhhhHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHhcC---
Confidence            8   454444443333333222   22222211 22222223211       0122444566778888888888877   


Q ss_pred             CcccccCCceeEEe-cC---CCHHHHHHhHhhccEEEcC-------CC----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          344 DWSHIIKQIGMFTF-TG---LNSEQVAFMTKEYHIYMTS-------DG----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       344 ~~~~~~~~~~~~~~-~~---~~~~~~~~~l~~~gi~~~~-------gg----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                       +.+......+... ++   +.....+++|+ .||.+..       -|    |+.++. +++|+++++++++.++.+-+
T Consensus       337 -ftIsg~~hPI~pv~lGda~lA~~~ad~lLk-~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~  413 (417)
T KOG1359|consen  337 -FTISGASHPICPVMLGDARLASKMADELLK-RGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFL  413 (417)
T ss_pred             -ceecCCCCCccceecccHHHHHHHHHHHHh-cCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhh
Confidence             5554422222222 22   24455677777 7988753       24    655554 58999999999999987654

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.67  E-value=2.4e-14  Score=137.36  Aligned_cols=344  Identities=10%  Similarity=0.053  Sum_probs=193.5

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHH-HhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQL-LVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++.+||+..|....+.| ..++.+++++.++ ..........| ......++.+.+++.+...-.  -.-+.+++  
T Consensus        54 D~dG~~ylD~~sg~~~~~lG-h~~p~i~~Ai~~q~~~~~l~~~~~~-~~~~~~~la~~l~~~l~~~~p--~~~~~v~f--  127 (464)
T TIGR00699        54 DVDGNRLLDLYSQISSIPIG-YNNPALLKAAQSPEMATTLINRPAL-GNFPSKDWAKILKEGILKVAP--KGQDQVWT--  127 (464)
T ss_pred             eCCCCEEEEccCCHhhhcCC-CCCHHHHHHHHHHHHHHhhcccccC-CcHHHHHHHHHHHHhHHhhCC--CCcCEEEE--
Confidence            45678999999998766677 6677888888764 22011111122 112233455555442211111  01268999  


Q ss_pred             cCCcccHHHHHHHHHHhhc------------------------CC---CeEEecCCCCCChHHHHhhc-Cc---------
Q 015435          106 CLSGTGSLRVGAEFLARHY------------------------HQ---LTIYIPQPTWGNHPKVFTLA-GL---------  148 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~------------------------~g---d~Vi~~~p~y~~~~~~~~~~-G~---------  148 (407)
                      ++||++|++.++++.....                        .|   .+|+....+|++........ |.         
T Consensus       128 ~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~  207 (464)
T TIGR00699       128 GMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIP  207 (464)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCC
Confidence            9999999999998886541                        11   26999999888775543321 11         


Q ss_pred             --eeeEEEeecCC-CC-----------CcChhhHHHHHHcCC-CCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCc
Q 015435          149 --SVKTYRYYDPA-TR-----------GLNFQGLLEDLRAAP-SGAIVLLHACAHNPTGVDP-TLEQWEQIRQLMRSKGL  212 (407)
Q Consensus       149 --~~~~v~~~~~~-~~-----------~~d~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~  212 (407)
                        .+..+|..... ..           .-+++.+++.+.+.+ +..++++ -......|.+. +++.+++|.++|++||+
T Consensus       208 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~-EPv~g~~G~~~~~~~yl~~lr~lc~~~g~  286 (464)
T TIGR00699       208 AFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIV-EPIQSEGGDNHASPDFFRKLRDITKKHNV  286 (464)
T ss_pred             CCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEE-eCCCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence              11112221000 00           013556777776432 3455555 33444457664 79999999999999999


Q ss_pred             eeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCC
Q 015435          213 LPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSS  292 (407)
Q Consensus       213 ~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  292 (407)
                      ++|+||+..+|...+   ..+....+.-.....+  .+++|.++..|    ++  +..     +.+ ..........+++
T Consensus       287 lLI~DEV~tGfGrtG---~~fa~e~~gv~~~PDi--~t~gK~lg~gG----~~--~~~-----~~~-~~~~~~~~~~T~~  349 (464)
T TIGR00699       287 AFIVDEVQTGVGATG---KFWAHEHWNLDDPPDM--VTFSKKFQTAG----YF--FHD-----PAF-RPNKPYRQFNTWM  349 (464)
T ss_pred             EEEEeeeeeCCCCCc---chhHHHhcCCCCCCCE--EEehhhhccCC----cc--ccc-----hhc-cCCCCcccccCCC
Confidence            999999999887654   2333333211101222  34799885334    33  233     111 1111112233556


Q ss_pred             CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCccccc--CCceeEEecCC-C---HHH
Q 015435          293 PPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG--TPGDWSHII--KQIGMFTFTGL-N---SEQ  364 (407)
Q Consensus       293 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~--~~~~~~~~~~~-~---~~~  364 (407)
                      .+++++.++.+.|+...        -+.+.++.+++.+++.+.|+++.  .+..+..+.  ..|.++. +.+ +   ...
T Consensus       350 gnp~~~aaa~a~L~~l~--------~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~g-ie~~~~~~~~~  420 (464)
T TIGR00699       350 GDPSRALILREIIQEIK--------RKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIA-WDTPDEAKRDK  420 (464)
T ss_pred             CCHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEE-EecCCHHHHHH
Confidence            77778888776665321        12344566666677777776652  110122222  3343333 333 2   223


Q ss_pred             HHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHHHHH
Q 015435          365 VAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       365 ~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      +.+.+.++|+.+.+.|    ||...- +++++++.++++|.+++
T Consensus       421 i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       421 LLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             HHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            4444555899998865    665442 58899999999998764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.67  E-value=5.1e-16  Score=137.17  Aligned_cols=283  Identities=14%  Similarity=0.108  Sum_probs=172.4

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh--cCC--CeEEecCCCCCChHHHHhhcCceeeE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH--YHQ--LTIYIPQPTWGNHPKVFTLAGLSVKT  152 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~--~~g--d~Vi~~~p~y~~~~~~~~~~G~~~~~  152 (407)
                      .++|.+.|.++-.-.+++..+...|++  ..|+|+.+.++.-.++-.  ..+  -.|+...|.|+.|......+.-..-.
T Consensus        45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~--GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~  122 (363)
T PF04864_consen   45 SPELERQIRRLHRVVGNAVTDGRYIVF--GTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYK  122 (363)
T ss_dssp             -HHHHHHHHHHHHHH-SB--TTSEEEE--ECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEE
T ss_pred             cHHHHHHHHHHHHHhccccccCcEEEE--cCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcc
Confidence            677778888777555666666788999  999999999985444333  222  25888899999999887765443333


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      +.- |...+.          ........|=++++||||.|.+     .+.+   ++.-+..+|.|-||..-.+.++    
T Consensus       123 w~G-da~~~~----------~~~~~~~~IElVTSPNNPDG~l-----r~~V---~~g~~~k~I~D~AYYWPhyTpI----  179 (363)
T PF04864_consen  123 WAG-DASNFK----------NSDNPSPYIELVTSPNNPDGQL-----REAV---LNGSSGKVIHDLAYYWPHYTPI----  179 (363)
T ss_dssp             EEE-ECCCGT----------T-S-CCGEEEEEESS-TTT-----------S---STTTEEEEEEE-TT-STTTS------
T ss_pred             ccc-cHHhhc----------cCCCCCCeEEEEeCCCCCcccc-----cchh---cCCCCcceeeeeeeeccccccc----
Confidence            332 122111          1112456777779999999994     2222   3445677899999987777643    


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHH
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYK  312 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  312 (407)
                            ....+..|.++|+||.-|-+|-|+||.  +++|++++.++..    +....+.+++.-.|.-++++|+..  .+
T Consensus       180 ------~~~aD~DiMLFT~SK~TGHAGSR~GWA--lVKD~~Va~kM~~----y~~lnTiGvS~dsQLRa~kiLk~v--~~  245 (363)
T PF04864_consen  180 ------TAPADHDIMLFTLSKLTGHAGSRFGWA--LVKDEEVAKKMTK----YMELNTIGVSRDSQLRALKILKVV--LD  245 (363)
T ss_dssp             -------S-B--SEEEEEHHHHCS-GGG-EEEE--EES-HHHHHHHHH----HHHHHCSS--HHHHHHHHHHHHHH--HH
T ss_pred             ------CCCCCCceEEEEEecccCcccccccee--eecCHHHHHHHHH----HHHHhcccCcHHHHHHHHHHHHHH--Hh
Confidence                  233577899999999999999999999  7998776665544    445556789999999888887631  11


Q ss_pred             hHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC-------------CceeEEecCCCH---HHHHHhHh
Q 015435          313 EWT------LELKAMADRIISMRQQLFDALSARGTPGDWSHIIK-------------QIGMFTFTGLNS---EQVAFMTK  370 (407)
Q Consensus       313 ~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~---~~~~~~l~  370 (407)
                      .+.      +...--++.++++.+.|.+.+...+.   +....-             ...-|.|++...   +.+...|+
T Consensus       246 ~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~r---FSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~  322 (363)
T PF04864_consen  246 GYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKR---FSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLR  322 (363)
T ss_dssp             HCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSS---EEE---SCEEETTTTCEEE---SEEEEEESSCGGSSHHHHHH
T ss_pred             cccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCc---eecCcCCchhccccccccCCCCCeEEEecCCcccccHHHHHH
Confidence            100      12334456667777788887776543   332211             244577775432   35888889


Q ss_pred             hccEEEcCCC---------eEEecCCCCCChhHHHHHHHHH
Q 015435          371 EYHIYMTSDG---------RISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       371 ~~gi~~~~gg---------Ris~~~~~~e~i~~~~~~l~~~  402 (407)
                      ++||..+.|.         |||+.. ++++++.++++|..+
T Consensus       323 ~~~I~tr~G~~fga~~ryVRlSml~-~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  323 EAKIITRSGVLFGADSRYVRLSMLK-RDDDFDQLLERLSKL  362 (363)
T ss_dssp             CTTEEEEEGGGGTS-TTEEEEESSS--HHHHHHHHHHHHCC
T ss_pred             hCCcccCCCCccCCCCCeEEEeccC-CHHHHHHHHHHHHhh
Confidence            9999998873         999997 889999999999754

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PLN03032 serine decarboxylase; Provisional

Probab=99.66  E-value=2.7e-14  Score=133.31  Aligned_cols=288  Identities=12%  Similarity=0.085  Sum_probs=174.8

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCce--EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRV--TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYR  154 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i--~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~  154 (407)
                      ..+.++.+++++ +.     +++++  ++  |+|||+++..++...+...++..|+++.-.|.+..++++.+|.+++.+|
T Consensus        68 e~~v~~~ia~ll-g~-----~~~~~~G~f--TsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~  139 (374)
T PLN03032         68 EVGVLDWFARLW-EL-----EKDEYWGYI--TTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVP  139 (374)
T ss_pred             HHHHHHHHHHHh-CC-----CCccCCEEE--eCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEee
Confidence            344455555555 32     23566  88  9999999988854333333556899999999999999999999999999


Q ss_pred             eecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC-----ceeeeccccccccCCCCC
Q 015435          155 YYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKG-----LLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       155 ~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~-----~~li~D~~y~~~~~~~~~  229 (407)
                      .  +.++.+|+++|++.+.+....+.+++.+..+|+||.+   +++++|+++|+++|     +++.+|.++..+... ..
T Consensus       140 ~--d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~i---dpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p-~~  213 (374)
T PLN03032        140 T--LPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAV---DDLDRILRILKELGYTEDRFYIHCDGALFGLMMP-FV  213 (374)
T ss_pred             e--CCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccC---CCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhh-cc
Confidence            8  3457899999999998432234445547789999995   67888899999996     589999998654321 00


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh-hcccCCCChhH-----HHHHHH
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI-RPMYSSPPIHG-----ASIVAT  303 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~  303 (407)
                      .....+ .+.  .....+..|.+|.++.| ..+|.+  +.+++ ..+.+........ ...+...+..+     ..++..
T Consensus       214 ~~~~~~-~~~--~~vDSis~s~HK~~g~P-~g~G~l--l~r~~-~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~  286 (374)
T PLN03032        214 SRAPEV-TFR--KPIGSVSVSGHKFLGCP-MPCGVA--LTRKK-HVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLR  286 (374)
T ss_pred             CCCccc-CCC--cCCcEEEECcccccCCC-cCeEEE--EEEch-hhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHH
Confidence            000000 011  12345677899987733 557888  57642 2222111000000 00111222222     222222


Q ss_pred             HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCC--C-
Q 015435          304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD--G-  380 (407)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g--g-  380 (407)
                      .+.        .+.+.+..++..++.+++.+.|++.+.   ..+..|......|..-..+.   + . +|..+.+-  . 
T Consensus       287 ~~G--------~~g~~~~~~~~~~~a~~l~~~l~~~~~---~~~~~p~~~~V~f~~~~~~~---~-~-~~w~l~~~~~~~  350 (374)
T PLN03032        287 RKG--------YRGIKRDVQHCMRNAHYLKDRLTEAGL---TCRLNELSSTVVFERPMDEA---F-I-KKWQLACEGDIA  350 (374)
T ss_pred             HhC--------HHHHHHHHHHHHHHHHHHHHHHHhCCC---cEEECCCceEEEEcCCCcHh---H-h-heeeecccCCEE
Confidence            222        145677778888899999999998873   22445555555554333221   1 1 24444433  3 


Q ss_pred             eEEecC-CCCCChhHHHHHHHH
Q 015435          381 RISMAG-LSSKTVPHLTDAIHA  401 (407)
Q Consensus       381 Ris~~~-~~~e~i~~~~~~l~~  401 (407)
                      ||.+.. ++++.++++++.|++
T Consensus       351 hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        351 HVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             EEEECCCCCHHHHHHHHHHHhc
Confidence            887654 566777777777654

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.66  E-value=3.8e-14  Score=132.38  Aligned_cols=309  Identities=17%  Similarity=0.126  Sum_probs=188.1

Q ss_pred             ccchhHHHHHHHHhcccc-ccc-----cCCCC--CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC-cccHHHHHHHH
Q 015435           49 LVLNVVRKAEQLLVNDQS-RVK-----EYLPI--VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS-GTGSLRVGAEF  119 (407)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~-~~~-----~y~~~--~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g-~t~a~~~~~~~  119 (407)
                      .|.++++++.+.+....+ ...     ++.+.  .-+.+.++.+++++ +..    +..++++  ++| ||++++++  +
T Consensus         3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~-~~~----~~~~v~~--~~gsgT~a~ea~--~   73 (349)
T TIGR01364         3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELL-NIP----DNYEVLF--LQGGATGQFAAV--P   73 (349)
T ss_pred             CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHh-CCC----CCceEEE--EcCCchHHHHHH--H
Confidence            466777777777752111 111     11110  12556677777776 421    1246777  766 99999999  4


Q ss_pred             HHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEEEee--cCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCC
Q 015435          120 LARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTYRYY--DPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDP  195 (407)
Q Consensus       120 ~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~~~--~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~  195 (407)
                      ...+.+||++++...+..+  +.++++..|. +..+...  .+++..+++++++.  .  ++.+.+.+ ++..|.||+..
T Consensus        74 ~nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~v~~-th~ETstGv~~  147 (349)
T TIGR01364        74 LNLLAEGKVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--S--EDAAYVHY-CANETIHGVEF  147 (349)
T ss_pred             HhcCCCCCeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--C--CCCCEEEE-cCCCCcccEec
Confidence            5557789998887765543  3557778888 7777652  12334566665552  2  45677777 67788999965


Q ss_pred             CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH
Q 015435          196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA  275 (407)
Q Consensus       196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~  275 (407)
                      +        ++++.+++++++|.+.+ ++..+.     .+..    .+  +++.|..|.+|.+|  +|.+  ..+ ++..
T Consensus       148 ~--------~l~~~~~~l~iVDavss-~g~~~i-----d~~~----~d--~~~~ssqK~lgP~G--lg~l--~~s-~~~~  202 (349)
T TIGR01364       148 R--------ELPDVKNAPLVADMSSN-ILSRPI-----DVSK----FG--LIYAGAQKNIGPAG--LTVV--IVR-KDLL  202 (349)
T ss_pred             c--------eecccCCCeEEEEcccc-ccCccC-----CHHH----cc--EEEEecccccCCCc--eEEE--EEC-HHHH
Confidence            4        55777899999999854 333222     1111    12  88889999999777  5666  344 4443


Q ss_pred             HHHHHHH------hhhh--hcccCCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 015435          276 SRVESQL------KLVI--RPMYSSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDWS  346 (407)
Q Consensus       276 ~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  346 (407)
                      +++....      ....  .....+++.....++..+++-..     .. .++++.++.+++++++++.|++++.   +.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~-----~~gG~e~i~~r~~~l~~~l~~~l~~~~g---l~  274 (349)
T TIGR01364       203 GRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLK-----EQGGVKAIEKRNQAKAQLLYDTIDNSNG---FY  274 (349)
T ss_pred             hhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHHHhCCC---ee
Confidence            3321111      0000  11223666666666666665321     12 3788999999999999999999852   21


Q ss_pred             -c-ccC--Cc-eeEEec--CCC-HHHHHHhHhhccEEEcCC----C--eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          347 -H-IIK--QI-GMFTFT--GLN-SEQVAFMTKEYHIYMTSD----G--RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       347 -~-~~~--~~-~~~~~~--~~~-~~~~~~~l~~~gi~~~~g----g--Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                       . ..+  .. ....+.  +.. .+.....+.++|+++.++    |  |+|+.. .++||+++++++|++++++
T Consensus       275 ~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       275 RNPVDPRNRSRMNVVFTLGNEELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             ccCCCHHHcCCeEEEEecCChhHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence             1 111  22 223332  221 123334556689977666    3  999865 5789999999999998765

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.65  E-value=4.9e-14  Score=119.70  Aligned_cols=290  Identities=17%  Similarity=0.136  Sum_probs=183.5

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY  156 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~  156 (407)
                      +..+.+.+++++ +.       +.+-+  |+|+.++-.++  ..+.+.+||.|++...++....-+++.+|.++..||..
T Consensus        63 I~~F~~dlaeFl-g~-------D~~R~--t~GARe~Kfav--Mhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~t  130 (382)
T COG1103          63 IKDFLEDLAEFL-GM-------DEVRV--TAGAREAKFAV--MHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNT  130 (382)
T ss_pred             HHHHHHHHHHHh-CC-------ceeee--cccchhhHHHH--HHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCC
Confidence            667888899988 64       77888  99999999998  45568899999999988777778889999999999987


Q ss_pred             cCCCCCcChhhHHHHHHcC----CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          157 DPATRGLNFQGLLEDLRAA----PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       157 ~~~~~~~d~~~l~~~i~~~----~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      ....+.++++...+.+++.    ...+.+.++.+   |.|..-+..|.++++++|+++|+.++...+|....-.      
T Consensus       131 g~Pey~i~~e~y~~viee~~~~~g~~~~lallTh---~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmp------  201 (382)
T COG1103         131 GYPEYKITPEGYAEVIEEVKDEGGDPPALALLTH---VDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMP------  201 (382)
T ss_pred             CCCceEecHHHHHHHHHHHHhccCCCceEEEEec---cCCCcCCchhhHHHHHHHHHcCCceEeecceeecccc------
Confidence            6667889999888877642    12344444444   5566666889999999999999999999999643321      


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhh-h--hhcccCCCChhHHHHHHHHhcChh
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL-V--IRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                      .+    .......++++|-.|.+... -++|.+   +-..+..+.+...-.. +  ......++...+.-++..+-+-+.
T Consensus       202 vs----~ke~g~DFiVgSGHKsmAAs-~PiGvl---~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~  273 (382)
T COG1103         202 VS----GKEIGADFIVGSGHKSMAAS-APIGVL---AMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPH  273 (382)
T ss_pred             cc----ccccCCCEEEecCccchhcc-CCeeEE---eehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHH
Confidence            11    12234568899999999854 468888   4556655554443311 1  001111221212211111111222


Q ss_pred             hH---HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---cCCceeEEe--cCC---------CHHHHHHhHhhc
Q 015435          310 MY---KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI---IKQIGMFTF--TGL---------NSEQVAFMTKEY  372 (407)
Q Consensus       310 ~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~~~~--~~~---------~~~~~~~~l~~~  372 (407)
                      .+   .+|.+.+        ++..++.+.|+++|.   +...   +.+..+..|  ..+         ..=++...|+++
T Consensus       274 V~eRVkrWdeEv--------~kaR~fv~elEkigg---~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~R  342 (382)
T COG1103         274 VVERVKRWDEEV--------EKARWFVAELEKIGG---VKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKR  342 (382)
T ss_pred             HHHHHHHHHHHH--------HHHHHHHHHHHHhhh---HHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhc
Confidence            22   2233333        334455555555542   1111   111111111  111         111355667778


Q ss_pred             cEEEcCCC-----eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          373 HIYMTSDG-----RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       373 gi~~~~gg-----Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ||.-...|     .+|+.+++.|+++..++++++++++.
T Consensus       343 gI~GI~~G~Tk~~K~svyGl~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         343 GIHGIQPGQTKYFKLSVYGLSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             CccccccCceeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence            88655444     67877789999999999999998864

>PRK04311 selenocysteine synthase; Provisional

Probab=99.65  E-value=1.5e-13  Score=131.96  Aligned_cols=339  Identities=16%  Similarity=0.132  Sum_probs=193.4

Q ss_pred             CCCeeeeeeeeeecCCCccc-cchhHHHHHHHHhccccccccCCCC---CC--cHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           30 SPVKLNLGVGAYRTEEGKPL-VLNVVRKAEQLLVNDQSRVKEYLPI---VG--LVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~---~g--~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      -+.+||.+.-+..+|.|.+. +.++++++.+.+. .. ....|...   .|  +..+++.+++++ +.       ++.++
T Consensus        78 lr~vinatg~v~~tNlg~s~l~~~v~eav~~~~~-~~-~~le~~l~~g~~g~r~~~~e~~lA~l~-Ga-------e~a~v  147 (464)
T PRK04311         78 LRPVINATGVVLHTNLGRALLSEAAIEAVTEAAR-GY-SNLEYDLATGKRGSRDRALAALLCALT-GA-------EDALV  147 (464)
T ss_pred             CcceecCCccEEeccCCCCCCCHHHHHHHHHHHh-cc-cccccchhhcccchHHHHHHHHHHHHh-CC-------CeEEE
Confidence            37889987667777777555 4455555555554 11 11122211   12  467888898877 53       56777


Q ss_pred             eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC------hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC
Q 015435          104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN------HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS  177 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~------~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~  177 (407)
                        +++++.|+.+++   ..+.+||+|++++..+..      ....++..|++++.++..    ...++++++++++  ++
T Consensus       148 --v~sgtaAl~l~l---~~l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~----~~t~~~dle~aI~--~~  216 (464)
T PRK04311        148 --VNNNAAAVLLAL---NALAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT----NRTHLRDYEQAIN--EN  216 (464)
T ss_pred             --ECCHHHHHHHHH---HHhCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC----CCCCHHHHHHhcC--cc
Confidence              899999998873   446799999999864331      234567889999999762    2357899999997  66


Q ss_pred             CcEEEEecCCCCCC--CCCCCHHHHHHHHHHHHHcCceeeeccccccccCC---CCCchhHHHHHHHHcCCcEEEEEecC
Q 015435          178 GAIVLLHACAHNPT--GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASG---SLDADAQSVRMFVADGGECLVAQSYA  252 (407)
Q Consensus       178 ~~~v~i~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~s~s  252 (407)
                      ++++++ .+++||+  |.. ..-++++|+++|++||+++|+|.+...+...   +.. ....+..... .+..++++|.+
T Consensus       217 TklV~~-vh~sN~~i~G~~-~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~-~~p~~~~~l~-~GaDiv~fSg~  292 (464)
T PRK04311        217 TALLLK-VHTSNYRIEGFT-KEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLP-DEPTVQELLA-AGVDLVTFSGD  292 (464)
T ss_pred             CeEEEE-EcCCCccccccC-CcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCC-CCCchhhHHh-cCCcEEEecCc
Confidence            888777 7889984  532 1346999999999999999999964322100   000 0011111111 34568999999


Q ss_pred             ccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhc---ChhhHHhHH-----HHHHHHHHH
Q 015435          253 KNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK---DSTMYKEWT-----LELKAMADR  324 (407)
Q Consensus       253 K~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~-----~~~~~~~~~  324 (407)
                      |.+|.|  ..|++  +++ +++.+++...  ...+..  ........+....+.   ++.  +.|.     +.+....++
T Consensus       293 K~LgGp--~~G~i--~g~-~~li~~l~~~--~~~r~l--r~dk~~l~~l~~~l~~~~~~~--~~~~~i~~l~~l~~~~~~  361 (464)
T PRK04311        293 KLLGGP--QAGII--VGK-KELIARLKKH--PLKRAL--RVDKLTLAALEATLRLYLDPE--KLAEEIPTLRLLTRSPEE  361 (464)
T ss_pred             ccccCC--ceEEE--EEc-HHHHHHHhhc--hhHHHH--hcchHHHHHHHHHHHHHhChh--hhhhhCcHHHHhcCCHHH
Confidence            998744  46777  454 4444333210  011111  111111222222221   110  0011     123334456


Q ss_pred             HHHHHHHHHHHHHhcCCCC-CcccccC----Cc---------eeEEec---CCCHHHHHHhHhhccE--EEcC-CCeE--
Q 015435          325 IISMRQQLFDALSARGTPG-DWSHIIK----QI---------GMFTFT---GLNSEQVAFMTKEYHI--YMTS-DGRI--  382 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~-~~~~~~~----~~---------~~~~~~---~~~~~~~~~~l~~~gi--~~~~-ggRi--  382 (407)
                      +.++.+.+.+.|+...... ...+...    .|         ++-+-+   +++.+.+...|++...  ..+- .+++  
T Consensus       362 ~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~~~~~~~l  441 (464)
T PRK04311        362 LRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGRIEDGRLLL  441 (464)
T ss_pred             HHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCEEEE
Confidence            6677888888887653110 1122211    01         111111   3466777777776443  3322 2344  


Q ss_pred             EecCCCCCChhHHHHHHHHHHH
Q 015435          383 SMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       383 s~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      -+-.+.++|++.++++|++++.
T Consensus       442 d~r~~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        442 DLRTLEEEDEERLAAALLEALN  463 (464)
T ss_pred             EeCcCCHHHHHHHHHHHHHHhh
Confidence            4455778899999999998764

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.64  E-value=7.8e-14  Score=134.16  Aligned_cols=339  Identities=12%  Similarity=0.036  Sum_probs=181.8

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhH--HHHHHHHhccccccccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVV--RKAEQLLVNDQSRVKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      .++++||+..|....+.| ...++++  +++.+++.+........  ....-..++.+.+++.. ...    ..+.+++ 
T Consensus        36 dG~~ylD~~~g~~~~~lG-h~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~----~~~~v~f-  108 (431)
T TIGR03251        36 DGRRYLDMFSFFASMALG-MNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVL-GDP----ALPHLFF-  108 (431)
T ss_pred             CCCChhhcccChhhcCCC-CCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhc-CCC----CcCEEEE-
Confidence            679999999997766677 6666777  67777765110001111  01111222333333332 111    1268999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc------C------CCeEEecCCCCCChHHHHhhc-Cce-ee--EEEe------ecC----
Q 015435          105 QCLSGTGSLRVGAEFLARHY------H------QLTIYIPQPTWGNHPKVFTLA-GLS-VK--TYRY------YDP----  158 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~------~------gd~Vi~~~p~y~~~~~~~~~~-G~~-~~--~v~~------~~~----  158 (407)
                       ++||++|++.++++.+.+.      .      +.+|+...-+|++........ |.. ..  ..|.      ..+    
T Consensus       109 -~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~  187 (431)
T TIGR03251       109 -IEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTF  187 (431)
T ss_pred             -eCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccC
Confidence             9999999999998887552      1      367999998888775544322 211 00  0010      000    


Q ss_pred             ----CCCC-------cChhhHHHHHHcCC-CCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435          159 ----ATRG-------LNFQGLLEDLRAAP-SGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS  225 (407)
Q Consensus       159 ----~~~~-------~d~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~  225 (407)
                          ....       -+++++++.+...+ +..++++ ...+.-.|.. .+++.+++|.++|++||+++|+||++.+|..
T Consensus       188 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAaviv-EPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~Gr  266 (431)
T TIGR03251       188 PLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIA-EPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGL  266 (431)
T ss_pred             CccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEE-eccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCc
Confidence                0000       12344555665333 3455555 3344445654 7889999999999999999999999998877


Q ss_pred             CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHH-HHh-hhhhcccCCCChhHHHHHHH
Q 015435          226 GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVES-QLK-LVIRPMYSSPPIHGASIVAT  303 (407)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~  303 (407)
                      .+   ..+....+.- ..+++   .++|.+.+    .|++   +..+ +.+ +.. .+. ......+.+.+++++.++.+
T Consensus       267 tG---~~~a~~~~gv-~PDi~---~~gK~~~~----~g~~---~~~~-i~~-~~~~~~~~~~~~~~T~~gnpl~~aaa~a  330 (431)
T TIGR03251       267 TG---TAWAYQQLGV-QPDIV---AFGKKTQV----CGIM---AGRR-VDE-VADNVFAVPSRLNSTWGGNLVDMVRATR  330 (431)
T ss_pred             cc---hHHHHHhcCC-CCCEE---EecccCcc----ceEE---ecch-HHH-hhhhcccCccccCCCCCCCHHHHHHHHH
Confidence            54   2333333211 22333   36887521    2344   4421 111 111 111 01122334667777887777


Q ss_pred             HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccccCCceeEEecCC-C---HHHHHHhHhhccEEEc
Q 015435          304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFTGL-N---SEQVAFMTKEYHIYMT  377 (407)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~l~~~gi~~~  377 (407)
                      .|+-..      +  +...++++++.+++.+.|+++  ..+.........|.++ .+.+ +   ...+...+.++||.+.
T Consensus       331 ~L~~l~------~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~-~i~~~~~~~~~~~~~~l~~~Gvl~~  401 (431)
T TIGR03251       331 ILEIIE------E--ERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMC-AFDLPSTADRDEVIRQLYREGVLLL  401 (431)
T ss_pred             HHHHHH------h--cCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeE-EEEeCCHHHHHHHHHHHHhCCeEEe
Confidence            765321      1  122334444445555444432  1110022223334333 2322 2   1234444556899998


Q ss_pred             CCC----eEEecC-CCCCChhHHHHHHHH
Q 015435          378 SDG----RISMAG-LSSKTVPHLTDAIHA  401 (407)
Q Consensus       378 ~gg----Ris~~~-~~~e~i~~~~~~l~~  401 (407)
                      +.|    ||+..- ++++|+++++++|.+
T Consensus       402 ~~g~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       402 GCGERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             cCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence            865    765543 588999999999876

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.64  E-value=1.4e-13  Score=141.50  Aligned_cols=297  Identities=15%  Similarity=0.102  Sum_probs=189.3

Q ss_pred             ccccCCCC---CC----cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc----cHHHHHHHHHHhhcC-CC----eEE
Q 015435           67 RVKEYLPI---VG----LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT----GSLRVGAEFLARHYH-QL----TIY  130 (407)
Q Consensus        67 ~~~~y~~~---~g----~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t----~a~~~~~~~~~~~~~-gd----~Vi  130 (407)
                      ..|.|.|.   +|    +.++|+.+++++ +.       ++|.+  +++++    +++.++++  ..+.+ ||    .|+
T Consensus       553 ~~hp~~p~~~~~g~~~~~~~~r~~la~i~-g~-------~~v~f--~pnaga~ge~a~~~vi~--~~~~~~Gd~~r~~vl  620 (993)
T PLN02414        553 NIHPFAPVDQAQGYQEMFEDLGDLLCEIT-GF-------DSFSL--QPNAGAAGEYAGLMVIR--AYHLSRGDHHRNVCI  620 (993)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHHHHh-CC-------CeEEE--cCCCcHHHHHHHHHHHH--HHHhccCCCCCCEEE
Confidence            45666662   34    556777777766 53       78999  99998    77777743  33554 87    899


Q ss_pred             ecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC-CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHH
Q 015435          131 IPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP-SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS  209 (407)
Q Consensus       131 ~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~  209 (407)
                      ++...|......+...|++++.+++  +.++.+|+++|+++++... +++++++ .+|+|-+|.   ..++++|+++|++
T Consensus       621 i~~~aH~sn~a~a~~~G~~vv~v~~--d~~G~vDle~L~~~i~~~~~~ta~V~v-t~pSn~gg~---e~~I~eI~~iah~  694 (993)
T PLN02414        621 IPVSAHGTNPASAAMCGMKIVVVGT--DAKGNINIEELRKAAEAHKDNLAALMV-TYPSTHGVY---EEGIDEICDIIHD  694 (993)
T ss_pred             eCCCcCccCHHHHHHCCCEEEEecc--CCCCCcCHHHHHHHHhccCCCeEEEEE-ECCCccccc---cchHHHHHHHHHH
Confidence            9999999998888899999999998  3456899999999998432 4566666 889999888   5579999999999


Q ss_pred             cCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccc----ccCCCcceeEEeecChhhHHHHHHHHhhh
Q 015435          210 KGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMG----LYGERVGALSIVCKTEDVASRVESQLKLV  285 (407)
Q Consensus       210 ~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~----~~G~r~G~~~~v~~~~~~~~~~~~~~~~~  285 (407)
                      +|+++++|.+...-...-.         -....+-.++.+|..|.|+    ..|-.+|.+  .+.     +.+...+...
T Consensus       695 ~Galv~vDgAq~~a~~~l~---------~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l--~~~-----~~L~p~lPg~  758 (993)
T PLN02414        695 NGGQVYMDGANMNAQVGLT---------SPGFIGADVCHLNLHKTFCIPHGGGGPGMGPI--GVK-----KHLAPFLPSH  758 (993)
T ss_pred             cCCEEEEEecCHHhccCcC---------CccccCCCEEEecCCccCCcCcccCCCCeeeE--EEc-----hhhcccCCCC
Confidence            9999999999632111100         0122345688888999764    334557887  344     2333322211


Q ss_pred             h-----------hcccCCC---Ch----hHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435          286 I-----------RPMYSSP---PI----HGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH  347 (407)
Q Consensus       286 ~-----------~~~~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  347 (407)
                      .           ...+.++   ..    ....++..++....     .+.+.+..++...+..|+.+.|.+ +.+  ..+
T Consensus       759 ~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG-----~~Gl~~~a~~a~~nAnYl~~rL~~-~~~--~~~  830 (993)
T PLN02414        759 PVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMG-----SEGLTDASKIAILNANYMAKRLEG-HYP--VLF  830 (993)
T ss_pred             ccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHC-----HhHHHHHHHHHHHHHHHHHHHHHh-hCC--ccc
Confidence            0           0000111   11    22223333333211     145677788888899999999976 321  233


Q ss_pred             ccCCceeE-----EecC------CCHHHHHHhHhhccEEEc----CC--C-eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          348 IIKQIGMF-----TFTG------LNSEQVAFMTKEYHIYMT----SD--G-RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       348 ~~~~~~~~-----~~~~------~~~~~~~~~l~~~gi~~~----~g--g-Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                      ..+.+.+|     .+..      .+.+.+.+.|.++||...    |.  . ||+... .+++|++++++++.++.++
T Consensus       831 ~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e  907 (993)
T PLN02414        831 RGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREE  907 (993)
T ss_pred             cCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence            33333211     1111      344445444446888552    22  2 887664 3679999999999887754

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.64  E-value=9.5e-15  Score=135.75  Aligned_cols=286  Identities=17%  Similarity=0.262  Sum_probs=162.2

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEE-eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH---H-------hh
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTT-VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV---F-------TL  145 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~-~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~---~-------~~  145 (407)
                      ++.+....++.+++..     +++... ++..||+.|+.++  +.+++++||+|+..++...+|...   .       ..
T Consensus        67 iE~la~~ra~~lF~~~-----~~~w~anvqp~SGs~An~av--~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~  139 (399)
T PF00464_consen   67 IEELAIERAKELFGAE-----PKEWYANVQPHSGSQANLAV--YMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASG  139 (399)
T ss_dssp             HHHHHHHHHHHHHT-S-----TTTEEEE---SSHHHHHHHH--HHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHH
T ss_pred             HHHHHHHHHHHHhCCC-----cccceEEeecCCchHHHHHH--HHHHHhhcCcEEecChhhccccccccccccccccccc
Confidence            5555555566666753     122222 6788899999888  566789999999998776655331   1       22


Q ss_pred             cCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-cccc
Q 015435          146 AGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFA  224 (407)
Q Consensus       146 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~  224 (407)
                      ...+.+.+++ +++++.+|.+++++.+.+. +.++|++ ..-.+|-     .-+++++.++|++.|.+|++|.++ .+++
T Consensus       140 ~~~~~~~y~~-d~~~~~ID~d~l~~~a~~~-kPklIi~-G~S~y~~-----~~d~~~~reIad~vga~l~~D~sH~~GLI  211 (399)
T PF00464_consen  140 LYFESVPYPV-DPDTGLIDYDELEKLAKEH-KPKLIIC-GASSYPR-----PIDFKRFREIADEVGAYLMADISHIAGLI  211 (399)
T ss_dssp             HHSEEEEEEB--TTTSSB-HHHHHHHHHHH---SEEEE-E-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHH
T ss_pred             ceEEEEeeee-ecCCCeECHHHHHHHHhhc-CCCEEEE-CchhccC-----ccCHHHHHHHHHhcCcEEEecccccccce
Confidence            3457888888 4677899999999998743 3455555 3323332     568899999999999999999997 5566


Q ss_pred             CCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec---------ChhhHHHHHHHHhhhhhcccCCCCh
Q 015435          225 SGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK---------TEDVASRVESQLKLVIRPMYSSPPI  295 (407)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  295 (407)
                      ..+.-   .+.  + +  ...++.+|..|+|  +|-|-|.+  +++         .++..+.+.+++.....+...+.+.
T Consensus       212 a~g~~---~~P--~-~--~ADvvt~sThKtl--~GPrggiI--~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h  279 (399)
T PF00464_consen  212 AGGLF---PNP--F-P--YADVVTGSTHKTL--RGPRGGII--LTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPH  279 (399)
T ss_dssp             HTTSS-----G--C-C--TSSEEEEESSGGG---SSS-EEE--EES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--
T ss_pred             ehhee---cCc--c-c--cceEEEeeccccc--cccCceEE--EEcCCccccCCcccccHHHHHHHhccccCCCcccCcc
Confidence            55421   111  1 1  2358889999986  68898887  576         0111134555555555444334444


Q ss_pred             hHHHHHHHH-hcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCc-eeEEec-----CCCHHHHHHh
Q 015435          296 HGASIVATI-LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQI-GMFTFT-----GLNSEQVAFM  368 (407)
Q Consensus       296 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~  368 (407)
                      ....+++++ +.. .+    ....++..+++.++.+.|.+.|++.|    +.+....+ +-.+|+     +++...+.+.
T Consensus       280 ~~~iaalAval~e-a~----~~~fk~Ya~qVv~NAk~La~~L~~~G----~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~  350 (399)
T PF00464_consen  280 MHRIAALAVALKE-AL----SPEFKEYAKQVVKNAKALAEALQERG----FKVVTGGTDNHQVLVDLRSFGIDGKEAEKA  350 (399)
T ss_dssp             HHHHHHHHHHHHH-HT----SHHHHHHHHHHHHHHHHHHHHHHHTT-----EEGGGS-SSSEEEEEGGGGTS-HHHHHHH
T ss_pred             hhHHHHHHHHHhc-cc----CHHHHHHHHHHHHHHHHHHHHHhhCC----cEEEECCCCCCeEEEEecccccchHHHHHH
Confidence            433333322 221 11    12345666778889999999999999    56553211 122343     4577788899


Q ss_pred             HhhccEEEcC----C--------C-eEEec-----CCCCCChhHHHHH
Q 015435          369 TKEYHIYMTS----D--------G-RISMA-----GLSSKTVPHLTDA  398 (407)
Q Consensus       369 l~~~gi~~~~----g--------g-Ris~~-----~~~~e~i~~~~~~  398 (407)
                      |++.||.+..    +        | ||+..     +..++|++++.+.
T Consensus       351 Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~  398 (399)
T PF00464_consen  351 LEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAEL  398 (399)
T ss_dssp             HHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHH
T ss_pred             HHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhh
Confidence            9999998842    2        3 88643     2455666655543

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.63  E-value=1e-13  Score=142.93  Aligned_cols=335  Identities=13%  Similarity=0.093  Sum_probs=195.9

Q ss_pred             eeecCCCccc-cchhHHHHHHHHhccc-ccccc-CCC----CCCcHHHHHHHHHHHhCCCCCCCCCC-ceEEeecCCccc
Q 015435           40 AYRTEEGKPL-VLNVVRKAEQLLVNDQ-SRVKE-YLP----IVGLVDFNKLSAKLILGADSPAIKDN-RVTTVQCLSGTG  111 (407)
Q Consensus        40 ~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~-y~~----~~g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t~g~t~  111 (407)
                      ++.|+.+... ++..+.++...+..+. ...+. |..    ..-+++.|+.+++++ +...    ++ +|++  |+|+|+
T Consensus        36 iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~l-ga~~----~~~~VvF--tsnaT~  108 (805)
T PLN02724         36 VYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYF-NAPP----SDYACVF--TSGATA  108 (805)
T ss_pred             EeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHh-CCCc----cceEEEE--eCChHH
Confidence            4455544333 4456777665543111 11111 111    123778899999988 4321    23 5899  999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh---hcCceeeEEEeecC------CCCCcCh--hhHHHHHH----c--
Q 015435          112 SLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT---LAGLSVKTYRYYDP------ATRGLNF--QGLLEDLR----A--  174 (407)
Q Consensus       112 a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~---~~G~~~~~v~~~~~------~~~~~d~--~~l~~~i~----~--  174 (407)
                      ++.+++..+ .+.+||+|+++.-.|.+...+.+   ..|++++.++...+      ....++.  +.+++.+.    .  
T Consensus       109 alnlva~~l-~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~  187 (805)
T PLN02724        109 ALKLVGETF-PWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKRE  187 (805)
T ss_pred             HHHHHHHHC-CCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhcccc
Confidence            999985332 25689999998877877665543   45999999887311      1122333  55665431    0  


Q ss_pred             --CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc-----CceeeeccccccccCCCCCchhHHHHHHHHcCCcEEE
Q 015435          175 --APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK-----GLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLV  247 (407)
Q Consensus       175 --~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~-----~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~  247 (407)
                        .++++++.+ +..+|-||.+.+.+.+..+.+.++++     ++++++|.+.+ ....+.  +   +    ...+..++
T Consensus       188 ~~~~~t~LVa~-~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~pi--D---v----~~~~~Dfl  256 (805)
T PLN02724        188 DDGEAYNLFAF-PSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTSPP--D---L----SRYPADFV  256 (805)
T ss_pred             ccCCCcceEEE-EccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhh-cCCCCC--C---h----hhcCCCEE
Confidence              123456555 88999999999877555444433332     36899999854 222212  1   1    11245788


Q ss_pred             EEecCcccc-ccCCCcceeEEeecChhhHHHHHHHHhhh--------------------hhcccCCCChhHHHHHHHHhc
Q 015435          248 AQSYAKNMG-LYGERVGALSIVCKTEDVASRVESQLKLV--------------------IRPMYSSPPIHGASIVATILK  306 (407)
Q Consensus       248 ~~s~sK~~~-~~G~r~G~~~~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~  306 (407)
                      +.|+.|.+| ..|  +|++  +++ ++..+.+...+-..                    .+....+++..+..++.++++
T Consensus       257 ~~S~HK~~GgP~G--~G~L--~vr-~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~  331 (805)
T PLN02724        257 VVSFYKIFGYPTG--LGAL--LVR-RDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFK  331 (805)
T ss_pred             EEecceeccCCCC--ceEE--EEe-hhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHH
Confidence            999999887 334  6887  455 23222222111000                    011122455555555554443


Q ss_pred             ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---Cccccc---------CCceeEEec--CC-----CHHHHHH
Q 015435          307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG---DWSHII---------KQIGMFTFT--GL-----NSEQVAF  367 (407)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~---------~~~~~~~~~--~~-----~~~~~~~  367 (407)
                      -..   .  -..++..++.++..+++.+.|+++....   .+.+..         .+++.+.|.  +.     ....+..
T Consensus       332 ~l~---~--ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~  406 (805)
T PLN02724        332 LLN---R--LTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEK  406 (805)
T ss_pred             HHH---H--hChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHH
Confidence            221   0  1356777888999999999998774210   123332         245666554  33     3455667


Q ss_pred             hHhhccEEEcC-----------------------------------------CC--eEEecC-CCCCChhHHHHHHHHHH
Q 015435          368 MTKEYHIYMTS-----------------------------------------DG--RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       368 ~l~~~gi~~~~-----------------------------------------gg--Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      ++.++||.++.                                         .|  |+|++. -+.+|++++++.|++.+
T Consensus       407 l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~  486 (805)
T PLN02724        407 LASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF  486 (805)
T ss_pred             HHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence            77778887732                                         14  899876 36799999999999865

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.63  E-value=2.9e-14  Score=134.09  Aligned_cols=278  Identities=17%  Similarity=0.162  Sum_probs=165.8

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCC-cccHHHHHHHHHHhhc---CCCeEEecCCCCCChHHHHhhcCceeeE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLS-GTGSLRVGAEFLARHY---HQLTIYIPQPTWGNHPKVFTLAGLSVKT  152 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g-~t~a~~~~~~~~~~~~---~gd~Vi~~~p~y~~~~~~~~~~G~~~~~  152 (407)
                      +.+.|+.+++++ +..    +++++++  |+| +|++++.++  ...+.   +||.|+. .+......+..+..|.+++.
T Consensus        46 ~~~~r~~l~~l~-~~~----~~~~vvf--~~gs~T~a~~~~~--~~l~~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~  115 (355)
T cd00611          46 VNEAESDLRELL-NIP----DNYKVLF--LQGGATGQFAAVP--LNLLGDKGTADYVVT-GAWSAKAAKEAKRYGGVVVI  115 (355)
T ss_pred             HHHHHHHHHHHh-CCC----CCceEEE--EcCCchHHHHHHH--HhcCCCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEE
Confidence            678899999988 431    2368999  888 999999995  44455   4444444 23323334467888999999


Q ss_pred             EEeecCCCCCcC-hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          153 YRYYDPATRGLN-FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       153 v~~~~~~~~~~d-~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      ++.. +.+...+ ++..+..+.  +++++|.+ ++..|.||+.++        ++++.||+++++|.+.+.... +.  +
T Consensus       116 ~~~~-~~g~~~~~~~~~~~~~~--~~~~lV~~-~h~~t~tG~~~~--------~i~~~~g~~~~VDa~qs~g~~-~i--d  180 (355)
T cd00611         116 VAAK-EEGKYTKIPDVETWDLA--PDAAYVHY-CSNETIHGVEFD--------EVPDTGGVPLVADMSSNILSR-PI--D  180 (355)
T ss_pred             Eecc-cccCCCCCCCHhhcCCC--CCCCEEEE-eCCcccccEEcc--------eecccCCCeEEEEccccccCC-CC--C
Confidence            9873 2211113 222223333  56787777 778999999632        345669999999998543332 12  1


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh-------h-hcccCCCChhHHHHHHH
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV-------I-RPMYSSPPIHGASIVAT  303 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~  303 (407)
                         +..+    +  +.+.|..|.+|.+|  +|.+  +.+ +++.+++.......       . .....+++..+..++.+
T Consensus       181 ---v~~~----~--~~~ss~~K~lGP~G--~g~l--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~a  246 (355)
T cd00611         181 ---VSKF----G--VIYAGAQKNLGPAG--VTVV--IVR-KDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGL  246 (355)
T ss_pred             ---HHHh----C--EEEeecccccCCCc--eEEE--EEC-HHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHH
Confidence               1111    1  35566899998776  5676  344 44333322110000       0 11123556656666666


Q ss_pred             HhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCCCCccc-cc--CCc-eeEEec--CC--CHHHHHHhHhhcc
Q 015435          304 ILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSAR-GTPGDWSH-II--KQI-GMFTFT--GL--NSEQVAFMTKEYH  373 (407)
Q Consensus       304 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~-~~--~~~-~~~~~~--~~--~~~~~~~~l~~~g  373 (407)
                      +++-..     .. .++++.++.+++++++++.|+++ |.   +.. ..  ... ..+.+.  +.  + +.....+.+.|
T Consensus       247 al~~l~-----~~gg~e~i~~~~~~l~~~l~~~l~~~~gl---~~~~~~~~~rs~~vvsf~~~~~~l~-~~~~~~~~r~G  317 (355)
T cd00611         247 VLKWLK-----EQGGVEAMEKRNRQKAQLLYDTIDNSNGF---YRGPVDKRARSRMNVPFRLGKEELE-KEFLKEAEAAG  317 (355)
T ss_pred             HHHHHH-----HcCCHHHHHHHHHHHHHHHHHHHHhCccc---cccCCCHHHcCceEEEEEcCChhhh-HHHHHHHHHCC
Confidence            655321     12 37788899999999999999998 52   111 11  122 223332  32  2 22223445589


Q ss_pred             EEEcCC----C--eEEecC-CCCCChhHHHHHHHHH
Q 015435          374 IYMTSD----G--RISMAG-LSSKTVPHLTDAIHAA  402 (407)
Q Consensus       374 i~~~~g----g--Ris~~~-~~~e~i~~~~~~l~~~  402 (407)
                      +.+.++    |  |+|+.. .+++|+++++++|+++
T Consensus       318 ~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         318 MIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             CcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence            985444    3  999875 5789999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.62  E-value=3.8e-14  Score=133.03  Aligned_cols=286  Identities=15%  Similarity=0.103  Sum_probs=176.6

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCCh--HHHHhhcCceeeEE
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNH--PKVFTLAGLSVKTY  153 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~--~~~~~~~G~~~~~v  153 (407)
                      -+.+.++.+++++ +..    ++.+++++ +.+||.+++.+  +...+.+||++++...+..++  .+.++.+|.. ..+
T Consensus        49 ~~~~~~~~l~~l~-~~~----~~~~v~~~-~gsgt~~~Ea~--~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~  119 (360)
T PRK05355         49 VAEEAEADLRELL-NIP----DNYKVLFL-QGGASLQFAMV--PMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVA  119 (360)
T ss_pred             HHHHHHHHHHHHh-CCC----CCcEEEEE-cCCchHHHHHH--HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEE
Confidence            3667788888877 421    11345551 67789999999  577788999988776554433  5567788854 555


Q ss_pred             EeecCCCCCcChhhHHH-HHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          154 RYYDPATRGLNFQGLLE-DLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       154 ~~~~~~~~~~d~~~l~~-~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      ... +.....+..++++ .++  ++.++|.+ ++..|.||+..+  ++.+|      +|+++|+|.+.+ ++..+.    
T Consensus       120 ~~~-~~~g~~~~~~~~~~~l~--~~~~~V~~-th~eTstGv~~~--~i~~i------~g~l~vVDavss-~g~~~i----  182 (360)
T PRK05355        120 ASS-EDDGFTYIPPLDEWQLS--DDAAYVHY-TSNETIDGTEFH--ELPDT------GDVPLVADMSSD-ILSRPI----  182 (360)
T ss_pred             ecc-cccCCCCCCChhhccCC--CCCCEEEE-ccCCCcceEecC--ccccc------CCCcEEEEcCcc-ccCccC----
Confidence            542 2123344444444 565  45677777 677889999764  45555      899999999854 332222    


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhh-------hh-hcccCCCChhHHHHHHHH
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL-------VI-RPMYSSPPIHGASIVATI  304 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~  304 (407)
                       .+..    .+  +++.|..|.+|.+|  +|.+  ..+ +++.+++...+..       .. .....+++.....++.++
T Consensus       183 -dv~~----~d--~~~~ssqK~lgP~G--lg~l--~~s-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~a  250 (360)
T PRK05355        183 -DVSK----FG--LIYAGAQKNIGPAG--LTIV--IVR-EDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLV  250 (360)
T ss_pred             -CHHH----cc--EEEEeccccccCCc--eEEE--EEC-HHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHH
Confidence             1211    12  88888999998766  5666  344 4433332221110       11 112346677777777766


Q ss_pred             hcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cc--CCc-eeEEec--CC-CHHHHHHhHhhccEEE
Q 015435          305 LKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDWSH-II--KQI-GMFTFT--GL-NSEQVAFMTKEYHIYM  376 (407)
Q Consensus       305 l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~--~~~-~~~~~~--~~-~~~~~~~~l~~~gi~~  376 (407)
                      ++-..     .. .+++..++.++.++++++.+++++.   +.. ..  ... ....+.  +. ..+.....+.++|+.+
T Consensus       251 L~~i~-----~~gG~e~i~~r~~~l~~~l~~~l~~~~~---~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~  322 (360)
T PRK05355        251 FKWLK-----EQGGVAAMEKRNQEKAALLYDAIDSSDF---YRNPVAPEDRSRMNVPFTLADEELDKKFLAEAKAAGLVG  322 (360)
T ss_pred             HHHHH-----HccCHHHHHHHHHHHHHHHHHHHHhCCC---cccCCChhhcCCcEEEEEcCChHHHHHHHHHHHHCCCcc
Confidence            65331     13 3788889999999999999999873   221 11  112 223332  22 1123333445589988


Q ss_pred             cCC----C--eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          377 TSD----G--RISMAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       377 ~~g----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      .++    |  |+|+.. .+.+|++++++.|++++++.+
T Consensus       323 ~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~~~  360 (360)
T PRK05355        323 LKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERRHG  360 (360)
T ss_pred             cCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence            655    3  999875 578999999999999987643

>PLN02263 serine decarboxylase

Probab=99.61  E-value=4e-13  Score=127.46  Aligned_cols=318  Identities=11%  Similarity=0.029  Sum_probs=198.9

Q ss_pred             HHHHHHHHhccccccccCCC-CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEec
Q 015435           54 VRKAEQLLVNDQSRVKEYLP-IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIP  132 (407)
Q Consensus        54 ~~~~~~~~~~~~~~~~~y~~-~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~  132 (407)
                      +...+.....+.++...+++ ..+..++.+.+.+|+....+.+-....-.+  |+|||+++..++...+...+...|+++
T Consensus       107 l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~v--tsGGTEaNL~Al~aARe~~~~~vvy~S  184 (470)
T PLN02263        107 LGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYI--TNCGTEGNLHGILVGREVFPDGILYAS  184 (470)
T ss_pred             HHHHHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEE--eCcHHHHHHHHHHHHHhhcCCcEEEEc
Confidence            33333333323344444433 124567777777777444333211113577  999999999986555544444578889


Q ss_pred             CCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 015435          133 QPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGL  212 (407)
Q Consensus       133 ~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~  212 (407)
                      +.+|.+..+++..+|++++.+|.  +.++.+|+++|++++.+....+.+++.+-+..+||.   .+++++|.++|+++|+
T Consensus       185 ~~aH~Sv~KAa~llgi~~~~Vp~--d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GA---iDpi~eIa~i~~~~g~  259 (470)
T PLN02263        185 RESHYSVFKAARMYRMECVKVDT--LVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGA---VDDLDLVIKTLEECGF  259 (470)
T ss_pred             CCccHHHHHHHHhcCCcceEecc--CCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcC---CCCHHHHHHHHHHcCC
Confidence            99999999999999999999998  346789999999999854445677766778889999   6789999999999997


Q ss_pred             -----eeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHH---HHhh
Q 015435          213 -----LPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVES---QLKL  284 (407)
Q Consensus       213 -----~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~---~~~~  284 (407)
                           ++.+|.+|.++...-.+ ....+ .+.  ..-.-+..+.+|.++ ....+|.+  +.+++. .+.+..   ++..
T Consensus       260 ~~~~iwlHVDAA~GG~~lPf~~-~~~~~-df~--~~vDSIsvD~HK~l~-~P~~cgvl--l~R~~~-~~~~~~~~~Yl~~  331 (470)
T PLN02263        260 SQDRFYIHCDGALFGLMMPFVK-RAPKV-TFK--KPIGSVSVSGHKFVG-CPMPCGVQ--ITRMEH-INVLSSNVEYLAS  331 (470)
T ss_pred             ccCCeeEEEeccchhhHhhhcc-ccccc-CCC--cCccEEEECCccccC-CCcCEEEE--EEehhh-HhhhccChHhhCC
Confidence                 99999999877641110 11011 111  113345567899877 44778888  577432 111111   1111


Q ss_pred             hhhcccCCCChhH-----HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC
Q 015435          285 VIRPMYSSPPIHG-----ASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG  359 (407)
Q Consensus       285 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  359 (407)
                      ..  .+...+..+     ..++...+.        .+.+.+..++..++.+++.+.+++.|.   ..+..|......|..
T Consensus       332 ~d--~ti~gSR~g~~al~lW~~L~~~G--------~~G~~~~i~~~~~~A~~l~~~l~~~g~---~~~~~p~s~~V~f~~  398 (470)
T PLN02263        332 RD--ATIMGSRNGHAPIFLWYTLNRKG--------YRGFQKEVQKCLRNAHYLKDRLREAGI---SAMLNELSSTVVFER  398 (470)
T ss_pred             CC--CCcCCCCCcHHHHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHHHHHHHhCCC---eEEeCCCceEEEEec
Confidence            10  111222222     222222221        145677778888899999999998873   345566666666543


Q ss_pred             CCHHHHHHhHhhccEEEcCCC---eEEecC-CCCCChhHHHHHHHHHHH
Q 015435          360 LNSEQVAFMTKEYHIYMTSDG---RISMAG-LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       360 ~~~~~~~~~l~~~gi~~~~gg---Ris~~~-~~~e~i~~~~~~l~~~l~  404 (407)
                      -..+.     ..+|..+...+   ||.+.. ++.+.++++++.|++..+
T Consensus       399 p~~~~-----~~~gW~L~~~~~~~Hivvmphv~~~~id~fi~DL~~~~~  442 (470)
T PLN02263        399 PKDEE-----FVRRWQLACQGNIAHVVVMPSVTIEKLDYFLKELVEKRS  442 (470)
T ss_pred             CchHH-----hhcceEEccCCCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence            32221     12466665544   887664 577889999999887664

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.61  E-value=2.4e-13  Score=121.42  Aligned_cols=291  Identities=14%  Similarity=0.093  Sum_probs=185.3

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY  156 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~  156 (407)
                      ..+|...+|++- .+       +..++  .+++--|+...+-.+...-||-.+.-..-.+.+....++..++.-..+.. 
T Consensus       218 hv~LE~eLA~LH-qK-------~aALl--FsSCfVANDstLftLak~lpgcei~SD~gNHASMI~GIrns~v~K~IFrH-  286 (570)
T KOG1360|consen  218 HVRLEAELADLH-QK-------EAALL--FSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRH-  286 (570)
T ss_pred             hhhHHHHHHHHh-cC-------cceee--eeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhhcCCcceeecc-
Confidence            567788888876 43       33333  44554455554323444458877777777888888888888776665644 


Q ss_pred             cCCCCCcChhhHHHHHHcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH
Q 015435          157 DPATRGLNFQGLLEDLRAA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV  235 (407)
Q Consensus       157 ~~~~~~~d~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~  235 (407)
                            -|++.|++++... ++.+.|+-.-+.+.-+|.+-   ++++|+++++|||.+.++||+++-..|++..   .++
T Consensus       287 ------ND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavc---pleelcDvah~yGAiTFlDEVHAVGlYG~rG---aGv  354 (570)
T KOG1360|consen  287 ------NDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVC---PLEELCDVAHKYGAITFLDEVHAVGLYGPRG---AGV  354 (570)
T ss_pred             ------CCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcC---CHHHHHHHHHHhCceeeeehhhhhccccCCC---CCc
Confidence                  2778888887653 34455555477888899855   5899999999999999999998766665321   111


Q ss_pred             HHH-HHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhH
Q 015435          236 RMF-VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEW  314 (407)
Q Consensus       236 ~~~-~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  314 (407)
                      ..- .-...-.|+.+++.|+||+-|   ||+   +...++.+-++.....++.  +.+.|+..+..++.+.+...     
T Consensus       355 gerdGvm~kvDiIsGTLgKafGcVG---GYI---Aat~~LvDmiRSyAaGFIF--TTSLPP~vl~GAleaVr~lk-----  421 (570)
T KOG1360|consen  355 GERDGVMHKVDIISGTLGKAFGCVG---GYI---AATRKLVDMIRSYAAGFIF--TTSLPPMVLAGALEAVRILK-----  421 (570)
T ss_pred             cccCCcchhhhhcccchhhhccccc---cee---hhhhhHHHHHHHhcCceEE--ecCCChHHHHhHHHHHHHHh-----
Confidence            000 011244588999999999877   888   5555555544444433332  22334444444444333211     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEe-cCC---CHHHHHHhHhhccEEEcCC-------C---
Q 015435          315 TLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTF-TGL---NSEQVAFMTKEYHIYMTSD-------G---  380 (407)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~l~~~gi~~~~g-------g---  380 (407)
                      ..+-..+|...+++..++++.|.++|    +.+++...-+... ++-   +.+..+.++.+++|++...       |   
T Consensus       422 ~~eg~~lR~~hqrnv~~~kq~l~~~G----iPVi~~pSHIiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~  497 (570)
T KOG1360|consen  422 SEEGRVLRRQHQRNVKYVKQLLMELG----IPVIPNPSHIIPVRVGDAALAKQASDILISKHNIYVQAINYPTVARGTER  497 (570)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHcC----CcccCCCcceeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCccccccee
Confidence            02245677888899999999999999    4555443433322 222   3455778999999998542       4   


Q ss_pred             -eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          381 -RISMAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       381 -Ris~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                       ||+... .+++-++.+++.+..+.+.+|
T Consensus       498 LRiaPTP~HT~~mm~~lv~~l~~vw~~v~  526 (570)
T KOG1360|consen  498 LRIAPTPHHTPQMMNILVNALLDVWNEVG  526 (570)
T ss_pred             eecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence             665432 466778888888888877654

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.61  E-value=5e-13  Score=129.27  Aligned_cols=270  Identities=20%  Similarity=0.238  Sum_probs=158.3

Q ss_pred             eecCCcccHHHHHHHHHHhhcCCCeEEecCC---CCCChHHHHh---hcCce----eeEEEeecCCCCCcChhhHHHHHH
Q 015435          104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQP---TWGNHPKVFT---LAGLS----VKTYRYYDPATRGLNFQGLLEDLR  173 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p---~y~~~~~~~~---~~G~~----~~~v~~~~~~~~~~d~~~l~~~i~  173 (407)
                      ++.++|+.|+..+  +.+.+.+||+|+..+.   .|.++.....   ..+..    ++++.. +++++.+|++++++.+.
T Consensus       104 v~~~SG~~AN~av--~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~-~~~~g~iD~d~Le~~l~  180 (475)
T PLN03226        104 VQPLSGSPANFAV--YTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRL-DESTGLIDYDKLEKKAM  180 (475)
T ss_pred             cCcCchHHHHHHH--HHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeee-cCCCCCcCHHHHHHHHh
Confidence            5568889999988  4666899999998553   3333332221   11222    224444 34567899999999987


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCc
Q 015435          174 AAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAK  253 (407)
Q Consensus       174 ~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  253 (407)
                      +. +++++++ . .++ +|...   |+++|.++|+++|+++++|+++.......   +..+    .......++++|++|
T Consensus       181 ~~-~pklIv~-~-~S~-~s~~~---D~a~i~~ia~~~ga~LlvD~AH~~Gli~~---~~~~----~p~~~~Div~~t~hK  246 (475)
T PLN03226        181 LF-RPKLIIA-G-ASA-YPRDW---DYARMRKIADKVGALLMCDMAHISGLVAA---QEAA----SPFEYCDVVTTTTHK  246 (475)
T ss_pred             hc-CCeEEEE-e-cCc-CCCcc---CHHHHHHHHHHcCCEEEEEchhhhCcccC---CCCC----CCCCCCeEEEecCcc
Confidence            43 2334433 2 232 56644   57788888999999999999975433221   1110    001134588999999


Q ss_pred             cccccCCCcceeEEeecChhhHH----------HHHHHHhhhhhc-ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          254 NMGLYGERVGALSIVCKTEDVAS----------RVESQLKLVIRP-MYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       254 ~~~~~G~r~G~~~~v~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      ++.  |.+-|++  +++ ++..+          .+.......... ...+++.....++..+++...     ....++.+
T Consensus       247 ~L~--GP~Gg~I--~~~-~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~-----~~~~~~~~  316 (475)
T PLN03226        247 SLR--GPRGGMI--FFR-KGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAM-----TPEFKAYQ  316 (475)
T ss_pred             ccc--CCCceEE--EEc-hhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHh-----CcCHHHHH
Confidence            883  3343666  454 33221          121112211111 112333333333333343210     01245667


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccC--CceeEE--e--cCCCHHHHHHhHhhccEEEcCC------------C-eEE
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIK--QIGMFT--F--TGLNSEQVAFMTKEYHIYMTSD------------G-RIS  383 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~--~--~~~~~~~~~~~l~~~gi~~~~g------------g-Ris  383 (407)
                      +++.++.++|.+.|++.|    +.+..+  ...+..  +  .+++...+...|++.||.+..+            | |+.
T Consensus       317 ~~~~~na~~L~~~L~~~G----~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiG  392 (475)
T PLN03226        317 KQVKANAAALANRLMSKG----YKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIG  392 (475)
T ss_pred             HHHHHHHHHHHHHHHhCC----CEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccC
Confidence            889999999999999887    555432  122221  1  1456777888888899988642            2 652


Q ss_pred             -----ecCCCCCChhHHHHHHHHHHH
Q 015435          384 -----MAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       384 -----~~~~~~e~i~~~~~~l~~~l~  404 (407)
                           -.+++++|++++.+.|.++++
T Consensus       393 t~~lt~~g~~~~d~~~ia~~i~~~~~  418 (475)
T PLN03226        393 TPAMTSRGLVEKDFEKVAEFLHRAVT  418 (475)
T ss_pred             cHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence                 223578999999999999886

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.61  E-value=1.5e-14  Score=130.49  Aligned_cols=235  Identities=20%  Similarity=0.150  Sum_probs=150.6

Q ss_pred             cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC---hHHHHhhc
Q 015435           70 EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN---HPKVFTLA  146 (407)
Q Consensus        70 ~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~---~~~~~~~~  146 (407)
                      .|+......++.+.+++++ +.       +..++  +++||.+..+++..+  +.+++.|++..++|..   ........
T Consensus        24 ~Yg~D~~~~~l~~~i~~l~-g~-------e~a~f--~~sGT~An~~al~~~--~~~~~~vi~~~~aHi~~~E~ga~~~~~   91 (290)
T PF01212_consen   24 AYGEDPTTARLEERIAELF-GK-------EAALF--VPSGTMANQLALRAH--LRPGESVICADTAHIHFDETGAIEELS   91 (290)
T ss_dssp             CTTSSHHHHHHHHHHHHHH-TS-------SEEEE--ESSHHHHHHHHHHHH--HHTTEEEEEETTEHHHHSSTTHHHHHT
T ss_pred             ccCCChhHHHHHHHHHHHc-CC-------CEEEE--eCCCChHHHHHHHHH--HhcCCceeccccceeeeeccchhhHhc
Confidence            5888888899999999988 65       66778  999999999995444  6799999999987642   22333568


Q ss_pred             CceeeEEEeecCCCCCcChhhHHHHHHcC----CCCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeeccccc
Q 015435          147 GLSVKTYRYYDPATRGLNFQGLLEDLRAA----PSGAIVLLHACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ  221 (407)
Q Consensus       147 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~----~~~~~v~i~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D~~y~  221 (407)
                      |.+++.++.  ++.+.+++++|++.+.+.    ++.++|++ .+++|.. |++++.+++++|.++|++||+.|+.|.+-.
T Consensus        92 G~~~~~l~~--~~~G~l~~~~l~~~~~~~~~h~~~~~~v~l-e~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl  168 (290)
T PF01212_consen   92 GAKLIPLPS--DDDGKLTPEDLEAAIEEHGAHHPQPAVVSL-ENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARL  168 (290)
T ss_dssp             TCEEEEEBE--CTGTBB-HHHHHHHHHHHTGTSGGEEEEEE-ESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTH
T ss_pred             CcEEEECCC--cccCCCCHHHHHHHhhhccccCCCccEEEE-EecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhH
Confidence            999999987  333679999999999752    23455566 7888764 889999999999999999999999999953


Q ss_pred             cccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHH---
Q 015435          222 GFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGA---  298 (407)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  298 (407)
                      .-...   ....++..+.  ....++..|++|..++++   |.+  ++.++++.++.....+.....+.... .+..   
T Consensus       169 ~~a~~---~~~~~~~e~~--~~~D~v~~~~tK~~g~~~---Gav--l~~~~~~i~~~~~~~k~~gg~~~~~G-~~~a~~~  237 (290)
T PF01212_consen  169 ANAAA---ALGVSLAEIA--AGADSVSFGGTKNGGAPG---GAV--LAGNKEFIAKARRQRKRLGGGMRQAG-VLAAAEL  237 (290)
T ss_dssp             HHHHC---HHHHHHHHHH--TTSSEEEEETTSTT-SSS---EEE--EEESHHHHHHHHHHHHHHTHHHHHTT-HHHHHHH
T ss_pred             HHhhh---cccccHHHHh--hhCCEEEEEEEccccccc---ceE--EEechHHHHHHHHHHHHhccCeeecc-eeeeech
Confidence            22211   0122344443  234466778999887664   777  56666644433222222111111011 1111   


Q ss_pred             --HHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          299 --SIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       299 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                        ..+...++..          .....+..++.+.+.+.|+.++
T Consensus       238 ~~~~~l~~l~~~----------~~~~~~~~~~A~~La~~l~~~~  271 (290)
T PF01212_consen  238 YQFAALRALELW----------LERARHANAMAKRLAAGLEALG  271 (290)
T ss_dssp             HHHHHHCHEECS----------HHHHHCHHHHHHCHHHCHHEEC
T ss_pred             hhHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHHHCC
Confidence              1222222211          2333556677888999998887

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.61  E-value=5.6e-13  Score=135.35  Aligned_cols=347  Identities=14%  Similarity=0.103  Sum_probs=188.4

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCccc
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTG  111 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~  111 (407)
                      .++|+..|++..+.|....+++++++.+++. .-.+..  .+.... +-...+|+.+....+.. ..+.+++  +++|++
T Consensus       366 ~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~-rl~hv~--~~~~~h-epa~~LAe~L~~~~~~~-~l~rVff--s~sGSe  438 (817)
T PLN02974        366 QQFDACASWWTQGPDPTLQPELARAVAYAAG-RYGHVM--FPENVH-EPALRAAELLLGGPGKG-WASRVFF--SDNGST  438 (817)
T ss_pred             eEEEcchhHHHhCCCcCCCHHHHHHHHHHHh-hCCccc--cCccCC-HHHHHHHHHHHhccCCC-CCCEEEE--CCchHH
Confidence            7999999987655552346778888888876 111111  111112 22233444442211100 0268999  999999


Q ss_pred             HHHHHHHHHHh-h-c-C----------------CCeEEecCCCCCChHHHHhhcCc----------e-----eeEEEeec
Q 015435          112 SLRVGAEFLAR-H-Y-H----------------QLTIYIPQPTWGNHPKVFTLAGL----------S-----VKTYRYYD  157 (407)
Q Consensus       112 a~~~~~~~~~~-~-~-~----------------gd~Vi~~~p~y~~~~~~~~~~G~----------~-----~~~v~~~~  157 (407)
                      |++.++++... . . .                ..+|+....+|++........+.          .     ...++...
T Consensus       439 AvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~  518 (817)
T PLN02974        439 AIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPT  518 (817)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCc
Confidence            99999998842 3 1 1                23588888888765443322211          0     00010000


Q ss_pred             ------------CCCC-----------C-----cC------------hhhHHHHHHc-----CC-CCcEEEEecCCCCCC
Q 015435          158 ------------PATR-----------G-----LN------------FQGLLEDLRA-----AP-SGAIVLLHACAHNPT  191 (407)
Q Consensus       158 ------------~~~~-----------~-----~d------------~~~l~~~i~~-----~~-~~~~v~i~~~p~NPt  191 (407)
                                  +..+           .     ++            .+.+++.+.+     .+ +..++++-+-.+.-.
T Consensus       519 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaG  598 (817)
T PLN02974        519 VGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAG  598 (817)
T ss_pred             cccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCC
Confidence                        0000           0     00            1446666642     12 234444432225556


Q ss_pred             CCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEee
Q 015435          192 GVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVC  269 (407)
Q Consensus       192 G~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~  269 (407)
                      |++ +++..++++.++|++||+++|+||++.+|+..+   ..+....+.- ..++++   ++|.++ .| +++|.+  ++
T Consensus       599 Gmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG---~~fa~e~~gv-~PDIi~---~gKgLt-gG~~Plaa~--l~  668 (817)
T PLN02974        599 GMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLG---VESAWELLGC-KPDIAC---YAKLLT-GGLVPLAAT--LA  668 (817)
T ss_pred             CcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCccc---chhhHHhcCC-CCCEEe---eccccc-CCCCccEEE--EE
Confidence            776 579999999999999999999999999998875   3344333321 233333   789998 78 699998  46


Q ss_pred             cChhhHHHHHHHH--hhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCC
Q 015435          270 KTEDVASRVESQL--KLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL----SARGTPG  343 (407)
Q Consensus       270 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~  343 (407)
                      . +++.+.+...-  ..+....+++.+++++.++.+.|+-..  +.  +..+.+.++.++..+++.+.|    .+.+.  
T Consensus       669 ~-~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~--~~--~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~--  741 (817)
T PLN02974        669 T-EEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYK--DP--STNPNLIPPGSRLRELWDEELVRAISSLPN--  741 (817)
T ss_pred             c-HHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHH--cc--cHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--
Confidence            5 44433332100  011223456788888888877765321  00  112233344444444444444    22221  


Q ss_pred             CcccccCCceeEEe--cC------CC---HHHHHHhHh-hccEEEcCCC---eEEec-CCCCCChhHHHHHHHHHH
Q 015435          344 DWSHIIKQIGMFTF--TG------LN---SEQVAFMTK-EYHIYMTSDG---RISMA-GLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       344 ~~~~~~~~~~~~~~--~~------~~---~~~~~~~l~-~~gi~~~~gg---Ris~~-~~~~e~i~~~~~~l~~~l  403 (407)
                       +.-+...|.++.+  ..      .+   ...+.+.+. ++|+.+.+.|   |+... ..++++++++++.|.+.|
T Consensus       742 -V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~Gnvi~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        742 -VERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLGNVVYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             -eeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence             2222333333322  11      11   122333344 7899999976   44322 247799999999998765

>PLN02880 tyrosine decarboxylase

Probab=99.60  E-value=9.2e-13  Score=128.08  Aligned_cols=330  Identities=10%  Similarity=0.092  Sum_probs=193.8

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCC-----CCceEEeecCCcccHHHHHHHHHHh
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIK-----DNRVTTVQCLSGTGSLRVGAEFLAR  122 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~-----~~~i~~~~t~g~t~a~~~~~~~~~~  122 (407)
                      +.+...+...+....  ......|...+...++.+.+.+|+....+.+-.     ...-++  |+|||+++..++...+.
T Consensus        93 ~~~~~~lad~l~~~~--n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~--tsggs~anl~al~~AR~  168 (490)
T PLN02880         93 SSVAGFLGEMLSAGL--NIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVI--QGTASEAVLVVLLAARD  168 (490)
T ss_pred             CcHHHHHHHHHHHhh--ccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEE--cCccHHHHHHHHHHHHH
Confidence            344455555554443  122233433445667777777777443332200     023677  99999998877544332


Q ss_pred             h--c-C-----CC-eEEecCCCCCChHHHHhhcCce---eeEEEeecCCCCCcChhhHHHHHHcC---CCCcEEEEecCC
Q 015435          123 H--Y-H-----QL-TIYIPQPTWGNHPKVFTLAGLS---VKTYRYYDPATRGLNFQGLLEDLRAA---PSGAIVLLHACA  187 (407)
Q Consensus       123 ~--~-~-----gd-~Vi~~~p~y~~~~~~~~~~G~~---~~~v~~~~~~~~~~d~~~l~~~i~~~---~~~~~v~i~~~p  187 (407)
                      .  . .     .. .|++++-+|.+..+++..+|+.   ++.||.+...++.+|++.|++++.+.   ...+.+++-+-+
T Consensus       169 ~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataG  248 (490)
T PLN02880        169 RVLRKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVG  248 (490)
T ss_pred             HHHHHhcccccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecC
Confidence            1  1 1     12 4566778899999999999984   78888843345789999999998642   335676665677


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc-CCcEEEEEecCccccccCCCcceeE
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD-GGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      ..+||.   .+++++|+++|++||+++.+|.+|.++....     ...+..... ....-+..+++|.++ ....+|.+ 
T Consensus       249 TT~~Ga---iDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~-----~~~~~~l~gie~aDSit~d~HKwl~-~P~~~g~l-  318 (490)
T PLN02880        249 TTSSTA---VDPLLELGKIAKSNGMWFHVDAAYAGSACIC-----PEYRHYIDGVEEADSFNMNAHKWFL-TNFDCSLL-  318 (490)
T ss_pred             CCcCcc---cCcHHHHHHHHHHcCCEEEEehhhHHHHHhC-----HHHHHHhcCchhcCEEEECchhhcC-CCccEEEE-
Confidence            888888   5568899999999999999999998775421     111111121 233466778999876 45777888 


Q ss_pred             EeecChhhHHHHHHHHhhhhhcc---------c-----C---CCC---hhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          267 IVCKTEDVASRVESQLKLVIRPM---------Y-----S---SPP---IHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       267 ~v~~~~~~~~~~~~~~~~~~~~~---------~-----~---~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                       +++++..   +...+.....+.         .     .   .+.   .+........+.        .+.+.+..++..
T Consensus       319 -lvr~~~~---l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G--------~~g~~~~i~~~~  386 (490)
T PLN02880        319 -WVKDRNA---LIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYG--------VENLQSYIRNHI  386 (490)
T ss_pred             -EEeCHHH---HHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhC--------HHHHHHHHHHHH
Confidence             5765432   211111110000         0     0   000   111111111111        133455555555


Q ss_pred             HHHHHHHHHHHhcCCCCCccccc-CCceeEEec--C--CCH--------HHHHHhHhhccEEEcCC---C----eEEecC
Q 015435          327 SMRQQLFDALSARGTPGDWSHII-KQIGMFTFT--G--LNS--------EQVAFMTKEYHIYMTSD---G----RISMAG  386 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~--~--~~~--------~~~~~~l~~~gi~~~~g---g----Ris~~~  386 (407)
                      +.++++.+.+++.+.   ++... +..++..|.  +  .+.        +...++.++..+.+...   |    |+++..
T Consensus       387 ~lA~~~~~~l~~~~~---~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n  463 (490)
T PLN02880        387 KLAKEFEQLVAQDSR---FEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGA  463 (490)
T ss_pred             HHHHHHHHHHhcCCC---EEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecC
Confidence            888889888877642   66544 344444443  2  111        22334455566766553   3    998765


Q ss_pred             -C-CCCChhHHHHHHHHHHHhh
Q 015435          387 -L-SSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       387 -~-~~e~i~~~~~~l~~~l~~~  406 (407)
                       . ++++++.+++.|.++.+++
T Consensus       464 ~~tt~~di~~~~~~i~~~~~~~  485 (490)
T PLN02880        464 PLTEERHVTAAWKVLQDEASKL  485 (490)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Confidence             2 4488999999998877653

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.60  E-value=1e-14  Score=136.06  Aligned_cols=233  Identities=17%  Similarity=0.168  Sum_probs=139.9

Q ss_pred             CCC-cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeE
Q 015435           74 IVG-LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKT  152 (407)
Q Consensus        74 ~~g-~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~  152 (407)
                      +.| +.+..+.+|+.+ +.+      +-.++  |+|+|.++.++  +++.+.+||+|+++..+|.+....+...|+++++
T Consensus        64 p~G~I~eAe~~aA~~f-GAd------~t~fl--vnGsT~g~~a~--i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvy  132 (417)
T PF01276_consen   64 PEGIIKEAEELAARAF-GAD------KTFFL--VNGSTSGNQAM--IMALCRPGDKVLVDRNCHKSVYNALILSGAIPVY  132 (417)
T ss_dssp             TBTHHHHHHHHHHHHH-TES------EEEEE--SSHHHHHHHHH--HHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEE
T ss_pred             CccHHHHHHHHHHHhc-CCC------eEEEE--ecCchHHHHHH--HHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEE
Confidence            344 555666666666 652      34555  99999999999  5777899999999999999999999999999999


Q ss_pred             EEeecCCC---CCcCh-----hhHHHHHHcCCCCcE---EEEecCCCCCC--CCCCCHHHHHHHHHHHHHcCceeeeccc
Q 015435          153 YRYYDPAT---RGLNF-----QGLLEDLRAAPSGAI---VLLHACAHNPT--GVDPTLEQWEQIRQLMRSKGLLPFFDSA  219 (407)
Q Consensus       153 v~~~~~~~---~~~d~-----~~l~~~i~~~~~~~~---v~i~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~li~D~~  219 (407)
                      ++..+.+.   .++++     +.+++++.+.|..+.   ++++    |||  |+++   ++++|+++|+++++.|++|||
T Consensus       133 i~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt----~PTY~Gv~~---di~~I~~~~h~~~~~llvDEA  205 (417)
T PF01276_consen  133 IPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLT----SPTYYGVCY---DIKEIAEICHKHGIPLLVDEA  205 (417)
T ss_dssp             EEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEE----SS-TTSEEE----HHHHHHHHCCTECEEEEE-T
T ss_pred             ecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEe----CCCCCeEEE---CHHHHHHHhcccCCEEEEEcc
Confidence            98752221   24566     999999998776655   6662    454  8866   588888899999999999999


Q ss_pred             cccc-cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChh--hHHHHHHHHhhhhhcccCCCChh
Q 015435          220 YQGF-ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTED--VASRVESQLKLVIRPMYSSPPIH  296 (407)
Q Consensus       220 y~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  296 (407)
                      |... .+.+..........=......++++.|..|.+  +++.-+.++ ...+..  ..+++...+...+   +++|+.+
T Consensus       206 hGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL--~altQts~l-h~~~~~~v~~~~~~~~l~~~~---TTSPSY~  279 (417)
T PF01276_consen  206 HGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTL--PALTQTSML-HVKGDRIVDHERVNEALSMHQ---TTSPSYP  279 (417)
T ss_dssp             T-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHS--SS-TT-EEE-EEETCCCTTHHHHHHHHHHHS----SS--HH
T ss_pred             ccccccCCCCccchhhccCccccccceeeeechhhcc--cccccceEE-EecCCCcccHHHHHHHHHHHc---CCChHHH
Confidence            8543 44311111110000011123569999999986  566555544 444443  3455555554443   3355554


Q ss_pred             HHHHHHHHhcChhhHHhH-HHHHHHHHHHHHHHHHHHHHHH
Q 015435          297 GASIVATILKDSTMYKEW-TLELKAMADRIISMRQQLFDAL  336 (407)
Q Consensus       297 ~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l  336 (407)
                      .+..+..+..      ++ ...-+++.++..++.+.+++.+
T Consensus       280 lmASlD~a~~------~m~~~~G~~l~~~~i~~a~~~R~~i  314 (417)
T PF01276_consen  280 LMASLDVARA------QMEEEEGRELLEEAIELAEEFRKKI  314 (417)
T ss_dssp             HHHHHHHHHH------HHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH------HHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4443332211      11 1223344455555555666666

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.59  E-value=8.8e-13  Score=117.36  Aligned_cols=156  Identities=16%  Similarity=0.144  Sum_probs=123.3

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCcee
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGLSV  150 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~~~  150 (407)
                      +...-|.++++.+--+.        --  +.++||+.|+..+  ++...++||.|+....-|.+....    ++..|+++
T Consensus        62 PT~~vlE~RiAaLEGG~--------aa--~a~aSG~AA~~~a--i~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v  129 (426)
T COG2873          62 PTTDVLEERIAALEGGV--------AA--LAVASGQAAITYA--ILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEV  129 (426)
T ss_pred             chHHHHHHHHHHhhcch--------hh--hhhccchHHHHHH--HHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEE
Confidence            34677888888877332        23  3489999999999  577789999999999888776554    45789999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++-       .|++.++++++  ++++++++ -+-.||.+.++   |+++|+++|+++|+.+|+|..+..-..     
T Consensus       130 ~fvd~-------~d~~~~~~aI~--~nTkavf~-EtigNP~~~v~---Die~ia~iAh~~gvpliVDNT~atpyl-----  191 (426)
T COG2873         130 RFVDP-------DDPENFEAAID--ENTKAVFA-ETIGNPGLDVL---DIEAIAEIAHRHGVPLIVDNTFATPYL-----  191 (426)
T ss_pred             EEeCC-------CCHHHHHHHhC--cccceEEE-EeccCCCcccc---CHHHHHHHHHHcCCcEEEecCCCccee-----
Confidence            99943       37899999999  88999999 77899999976   689999999999999999998753221     


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                          ++  +-.....|+++|.||.+|..|--+|.++
T Consensus       192 ----~r--P~~hGADIVvHS~TK~igGhGt~iGG~i  221 (426)
T COG2873         192 ----CR--PIEHGADIVVHSATKYIGGHGTAIGGVI  221 (426)
T ss_pred             ----cc--hhhcCCCEEEEeecccccCCccccceEE
Confidence                11  1123457889999999999998888884

>PLN02590 probable tyrosine decarboxylase

Probab=99.59  E-value=1.7e-12  Score=126.40  Aligned_cols=337  Identities=11%  Similarity=0.103  Sum_probs=200.2

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCC-----CCceEEeecCCcccHHHHHHHHHHh
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIK-----DNRVTTVQCLSGTGSLRVGAEFLAR  122 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~-----~~~i~~~~t~g~t~a~~~~~~~~~~  122 (407)
                      +.+..++..++....  ......|...+...++.+.+.+|+....+.+-.     ...-++  |+|||+++..++...+.
T Consensus       141 ~~~~~~lgd~l~sa~--n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~--~sGgSeAnl~al~aAR~  216 (539)
T PLN02590        141 TSVAGFLGEMLNAGL--SVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVI--QGTGCEAVLVVVLAARD  216 (539)
T ss_pred             CcHHHHHHHHHHHhc--ccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEE--cCchHHHHHHHHHHHHH
Confidence            445555555555554  222344545556677888888887444333210     123677  99999999777533332


Q ss_pred             h--c-------CCCeEEecCCCCCChHHHHhhcCc---eeeEEEeecCCCCCcChhhHHHHHHcC---CCCcEEEEecCC
Q 015435          123 H--Y-------HQLTIYIPQPTWGNHPKVFTLAGL---SVKTYRYYDPATRGLNFQGLLEDLRAA---PSGAIVLLHACA  187 (407)
Q Consensus       123 ~--~-------~gd~Vi~~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~---~~~~~v~i~~~p  187 (407)
                      .  .       +.-.|++++.+|.+..+++..+|+   +++.+|++...++.+|++.|+++|.+.   ...+.+++-+-.
T Consensus       217 ~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaG  296 (539)
T PLN02590        217 RILKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVG  296 (539)
T ss_pred             HHHhhhcccCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            1  0       111455677788899999999998   588898842245789999999999642   234666665667


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc-CCcEEEEEecCccccccCCCcceeE
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD-GGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      ...||.   .+++++|+++|++||+|+.+|.||.++..-..     ..+.+... ....-+...++|.+. ....+|.+ 
T Consensus       297 TT~tGa---iDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~-----~~r~~~~Gie~ADSit~D~HK~l~-~p~~cg~l-  366 (539)
T PLN02590        297 TTSSAA---VDPLVPLGNIAKKYGIWLHVDAAYAGNACICP-----EYRKFIDGIENADSFNMNAHKWLF-ANQTCSPL-  366 (539)
T ss_pred             CCCCcc---cCCHHHHHHHHHHhCCeEEEecchhhhhhcCh-----hhHHHhcCCccCCEEEECchhhcC-cCcCEEEE-
Confidence            777888   77899999999999999999999988764311     12222221 223345567899876 44777887 


Q ss_pred             EeecChhhH-HHH---HHHHhhhh-------hc--ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 015435          267 IVCKTEDVA-SRV---ESQLKLVI-------RP--MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLF  333 (407)
Q Consensus       267 ~v~~~~~~~-~~~---~~~~~~~~-------~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (407)
                       +++++... +.+   ..++....       ..  +....+.- .. +++++-.  ++..=.+.+.+..++..+..+++.
T Consensus       367 -lvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr-~r-aLklW~~--lr~~G~~G~~~~i~~~~~lA~~~~  441 (539)
T PLN02590        367 -WVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRR-FR-SLKLWMV--LRLYGSENLRNFIRDHVNLAKHFE  441 (539)
T ss_pred             -EecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCc-hH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence             67765322 111   11111000       00  01111111 11 1111110  000112456777788888999999


Q ss_pred             HHHHhcCCCCCccccc-CCceeEEec--C--CCH--------HHHHHhHhhccEEEcCC---C----eEEecC--CCCCC
Q 015435          334 DALSARGTPGDWSHII-KQIGMFTFT--G--LNS--------EQVAFMTKEYHIYMTSD---G----RISMAG--LSSKT  391 (407)
Q Consensus       334 ~~l~~~~~~~~~~~~~-~~~~~~~~~--~--~~~--------~~~~~~l~~~gi~~~~g---g----Ris~~~--~~~e~  391 (407)
                      +.+++.+.   +++.. +.-+.+.|.  +  .+.        +...++.+...+++.+.   |    |+++..  .++++
T Consensus       442 ~~l~~~~~---fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~d  518 (539)
T PLN02590        442 DYVAQDPS---FEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKH  518 (539)
T ss_pred             HHHhcCCC---eEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHH
Confidence            99988753   66543 444444443  1  121        12233444445555553   3    998865  35688


Q ss_pred             hhHHHHHHHHHHHhh
Q 015435          392 VPHLTDAIHAAVTRM  406 (407)
Q Consensus       392 i~~~~~~l~~~l~~~  406 (407)
                      ++.+++.|.+..+++
T Consensus       519 v~~~~~~i~~~a~~~  533 (539)
T PLN02590        519 VTEAWQIIQKHASKF  533 (539)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999877654

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.59  E-value=1.8e-13  Score=128.82  Aligned_cols=309  Identities=15%  Similarity=0.093  Sum_probs=178.0

Q ss_pred             cccchhHHHHHHHHhccc-cc--cccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec-CCcccHHHHHHHHHH
Q 015435           48 PLVLNVVRKAEQLLVNDQ-SR--VKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC-LSGTGSLRVGAEFLA  121 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~-~~--~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t-~g~t~a~~~~~~~~~  121 (407)
                      |.|.++-.++.+++.+.. ..  ..++++  ..-+.+.|+.+++++ +..    ++.+|++  + .|+|.+++.++  ..
T Consensus         9 pGP~~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~-~~~----~~~~v~f--~~gs~T~a~~~~~--~~   79 (361)
T TIGR01366         9 SGPSKVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELF-SLP----DGYEVIL--GNGGATAFWDAAT--FG   79 (361)
T ss_pred             CCCcCCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHh-CCC----CCceEEE--ECCchhHHHHHHH--Hh
Confidence            445555555555554110 00  123333  234777889999988 431    1246777  6 55999999994  44


Q ss_pred             hhcCCCeEEecCCCCC-ChHHHHhh--cCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHH
Q 015435          122 RHYHQLTIYIPQPTWG-NHPKVFTL--AGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLE  198 (407)
Q Consensus       122 ~~~~gd~Vi~~~p~y~-~~~~~~~~--~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~  198 (407)
                      .+.+ +.+++..-.|. .+......  .+.++..++.  +++..++.     .+.  ++++++.+ ++..|.||+..+. 
T Consensus        80 l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~-----~~~--~~~~lV~~-~h~et~tG~~~pi-  147 (361)
T TIGR01366        80 LIEK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTA--DPGSAPEP-----QAD--PGVDVIAW-AHNETSTGVAVPV-  147 (361)
T ss_pred             cccc-cccEEecCHHHHHHHHHHHhhhccCCceEEec--CCCCCCCC-----ccC--CCCCEEEE-cccCCccceeccc-
Confidence            3432 33333333343 23333333  1236777766  33333333     222  56788777 7789999998764 


Q ss_pred             HHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHH
Q 015435          199 QWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRV  278 (407)
Q Consensus       199 ~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~  278 (407)
                        ++|   ++++|+++|+|.+.+ +.....+     +.      ...++++|..|.++.+|- ++.+   .-+++..+++
T Consensus       148 --~~I---~~~~g~~~iVDavqs-~g~~~id-----v~------~~D~~~~s~~K~lg~~~G-l~~~---~~s~~~~~~~  206 (361)
T TIGR01366       148 --RRP---EGSDDALVVIDATSG-AGGLPVD-----IA------ETDVYYFAPQKNFASDGG-LWLA---IMSPAALERI  206 (361)
T ss_pred             --ccc---cccCCCeEEEEcCcc-ccCCCCC-----HH------HCCEEEEEchhhcCCCCc-eEEE---EECHHHHhhh
Confidence              444   588999999999844 3332221     11      135678999999987641 2222   3344433333


Q ss_pred             HHH----------Hh--hhhh----cc-cCCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          279 ESQ----------LK--LVIR----PM-YSSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       279 ~~~----------~~--~~~~----~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      ...          +.  ....    .. ..+++.....++..+++...     +. .++...+++++..+++++.+++.+
T Consensus       207 ~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~-----~~gg~e~~~~r~~~l~~~l~~~l~~~~  281 (361)
T TIGR01366       207 EAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMN-----GNGGLDWAVARTADSSSRLYSWAQERP  281 (361)
T ss_pred             hcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            211          00  0000    11 22334443334444443221     11 256777889999999999999887


Q ss_pred             CCCCcccc-------cCCceeEEec-CCCHHHHHHhHhhccEEEcCCC--------eEEecC-CCCCChhHHHHHHHHHH
Q 015435          341 TPGDWSHI-------IKQIGMFTFT-GLNSEQVAFMTKEYHIYMTSDG--------RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       341 ~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~gg--------Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      .   +...       .+..+.+.+. +++.+.+...|+++||.+.++.        |||+.+ .+.+|+++++++|++++
T Consensus       282 ~---~~~~~~~~~~~s~~v~~v~~~~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~  358 (361)
T TIGR01366       282 Y---ATPFVTDPGKRSQVVGTIDFVDDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVV  358 (361)
T ss_pred             C---cccCCCChhhcccceEEEECCCccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence            3   2211       1122334443 4577777776777899998761        999876 67899999999999998


Q ss_pred             Hhh
Q 015435          404 TRM  406 (407)
Q Consensus       404 ~~~  406 (407)
                      +++
T Consensus       359 ~~~  361 (361)
T TIGR01366       359 ERL  361 (361)
T ss_pred             hhC
Confidence            875

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK15029 arginine decarboxylase; Provisional

Probab=99.59  E-value=1.5e-13  Score=137.41  Aligned_cols=190  Identities=16%  Similarity=0.149  Sum_probs=125.0

Q ss_pred             CCC-cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeE
Q 015435           74 IVG-LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKT  152 (407)
Q Consensus        74 ~~g-~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~  152 (407)
                      +.| +.+..+.+|+.+ +..      .-.++  |+|+|.++.++  +++.+.+||+|+++..+|.+....+...|+++++
T Consensus       203 p~G~I~eAq~~aA~~f-gA~------~t~Fl--vNGST~gn~a~--i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvy  271 (755)
T PRK15029        203 HTGAFGESEKYAARVF-GAD------RSWSV--VVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVY  271 (755)
T ss_pred             CCcHHHHHHHHHHHHh-CCC------cEEEE--eCChhHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEE
Confidence            344 455555555555 652      34555  99999999988  5677899999999999999999999999999999


Q ss_pred             EEeecCCC----CCcC-----hhhHHHHHHcCCCCc--------EEEEecCCCCCC--CCCCCHHHHHHHHHHHHHcCce
Q 015435          153 YRYYDPAT----RGLN-----FQGLLEDLRAAPSGA--------IVLLHACAHNPT--GVDPTLEQWEQIRQLMRSKGLL  213 (407)
Q Consensus       153 v~~~~~~~----~~~d-----~~~l~~~i~~~~~~~--------~v~i~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~  213 (407)
                      ++-.- +.    .+++     ++.+++++.+.|..+        ++++ .   |||  |+++   ++++|+++|+++|+.
T Consensus       272 l~P~~-~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvl-t---~PTY~Gv~~---di~~I~~~~h~~~~~  343 (755)
T PRK15029        272 MVPSR-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVV-T---NCTYDGVCY---NAKEAQDLLEKTSDR  343 (755)
T ss_pred             ecccc-cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEE-E---CCCCcceee---CHHHHHHHHHhcCCe
Confidence            86421 12    2344     899999998766544        6666 3   455  8876   578888889999999


Q ss_pred             eeecccccc-ccCCCCCchhHHHHHHH-H-cCCcEEEEEecCccccccCCCcceeEEeecCh--hh-HHHHHHHHhhh
Q 015435          214 PFFDSAYQG-FASGSLDADAQSVRMFV-A-DGGECLVAQSYAKNMGLYGERVGALSIVCKTE--DV-ASRVESQLKLV  285 (407)
Q Consensus       214 li~D~~y~~-~~~~~~~~~~~~~~~~~-~-~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~--~~-~~~~~~~~~~~  285 (407)
                      |++||||.. |.+.+.-+...++..-. . .+..++++.|.+|.+  +++.-|.+. ...+.  .+ .+++...+...
T Consensus       344 llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~L-Hv~~~~~~id~~r~~~~l~~~  418 (755)
T PRK15029        344 LHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYI-HVREGRGAINFSRFNQAYMMH  418 (755)
T ss_pred             EEEECccccccccCccccccccccccccccCCCceEEEEchhhcc--cchhhhhhh-eeCCCccccCHHHHHHHHHHH
Confidence            999999854 44432111111110000 1 223459999999997  456555443 44333  11 24455544433

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.58  E-value=9.3e-14  Score=131.77  Aligned_cols=280  Identities=15%  Similarity=0.096  Sum_probs=168.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecC-CcccHHHHHHHHHHhhcC-CCeEEecCCCCCC-hHH-HHhhcCc-ee
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCL-SGTGSLRVGAEFLARHYH-QLTIYIPQPTWGN-HPK-VFTLAGL-SV  150 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~-g~t~a~~~~~~~~~~~~~-gd~Vi~~~p~y~~-~~~-~~~~~G~-~~  150 (407)
                      -+.+.|+.+++++ +..    ++++|++  +. |+|+++++++  ...+.+ ++.|+. .-.|.. +.. +.+..|+ ++
T Consensus        49 ~~~~~r~~l~~l~-~~~----~~~~v~~--~~gs~T~~~~~~~--~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v  118 (378)
T PRK03080         49 LLKRVIEGTRELL-SLP----EGYEVGI--VPGSDTGAWEMAL--WSLLGARRVDHLA-WESFGSKWATDVVKQLKLEDP  118 (378)
T ss_pred             HHHHHHHHHHHHh-CCC----CCceEEE--ECCchHHHHHHHH--HhcCCCCcceEEE-eCHHHHHHHHHHHhhcCCCCc
Confidence            4677888888887 431    1257888  75 8999999995  444553 344544 333432 222 2256788 88


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++.  +++..+|+++++      . ++.+.+ ++.+|.||+..+   +++|++  +++|+++++|.+.+ ++..+.+ 
T Consensus       119 ~~~~~--~~g~~~d~~~i~------~-~~~V~~-~h~~t~tG~~~p---i~~I~~--~~~g~~~vVDa~qs-~G~~pid-  181 (378)
T PRK03080        119 RVLEA--DYGSLPDLSAVD------F-DRDVVF-TWNGTTTGVRVP---VARWIG--ADREGLTICDATSA-AFALPLD-  181 (378)
T ss_pred             eEecc--CCCCCCCHhhcC------C-CCCEEE-EecCCccceecc---chhhcc--ccCCCeEEEecccc-cccCCCC-
Confidence            88877  445567766532      1 345555 778999999775   667766  78999999999754 4332221 


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccc-cCCCcceeEEeecChhhHHHHHHHH------------------hhhhhccc-
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGL-YGERVGALSIVCKTEDVASRVESQL------------------KLVIRPMY-  290 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~r~G~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~-  290 (407)
                          +..      -.+++.|..|.++. +|  +|++  +.+ ++..+++....                  .......+ 
T Consensus       182 ----v~~------iD~~~~s~~K~l~~P~G--~g~l--~v~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  246 (378)
T PRK03080        182 ----WSK------LDVYTFSWQKVLGGEGG--HGMA--ILS-PRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTI  246 (378)
T ss_pred             ----HHH------CcEEEEehhhhCCCCCc--eEEE--EEC-HHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcc
Confidence                111      25788889998863 45  6777  344 44444433211                  00000111 


Q ss_pred             CCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc----CCc-eeEEec--C---
Q 015435          291 SSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDWSHII----KQI-GMFTFT--G---  359 (407)
Q Consensus       291 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~-~~~~~~--~---  359 (407)
                      .+++..+..++..+++...     +. ..++.+++.+++.+++++.+++.+.   +....    ..+ +.+.+.  +   
T Consensus       247 ~tp~i~~i~~l~~al~~l~-----~~gG~e~i~~r~~~l~~~l~~~l~~~~~---~~~~~~~~~~~s~~i~~~~~~~~~~  318 (378)
T PRK03080        247 NTPSMLTVEDYLDQLDWAN-----SIGGLDALIARTAANASVLYDWAEKTPW---ATPLVADPATRSNTSVTLDFVDAQA  318 (378)
T ss_pred             cCchHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHHHhCCC---cccccCCccccCccEEEEEcCCchH
Confidence            1334444433343443211     12 3677889999999999999998763   22221    112 334332  2   


Q ss_pred             -CCHHHHHHhHhhccEEEcCC------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          360 -LNSEQVAFMTKEYHIYMTSD------G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       360 -~~~~~~~~~l~~~gi~~~~g------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                       .+.+.+..+++ +++.+..|      +  |+|+.. .+++|+++++++|+++++++
T Consensus       319 ~~~~~~~~~l~~-~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~  374 (378)
T PRK03080        319 AVDAAAVAKLLR-ENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERL  374 (378)
T ss_pred             HHHHHHHHHHHH-cCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence             22344555655 47776542      2  999765 57799999999999988764

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.56  E-value=5e-14  Score=131.26  Aligned_cols=278  Identities=14%  Similarity=0.111  Sum_probs=160.7

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc-cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK-EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      .++++++|+..|....+.| ..++++.+++.+++. ...... ......-..++.+.+.+.. +.     ..+.+.+  +
T Consensus        13 ~dG~~~lD~~~~~~~~~lG-h~~p~i~~ai~~~~~-~~~~~~~~~~~~~~~~~la~~L~~~~-p~-----~~~~v~f--~   82 (339)
T PF00202_consen   13 VDGREYLDFMSGYGSVNLG-HNHPEIAEAIAEQAN-KLNYVSFSGFTHPEAAELAEKLAELF-PG-----GLDRVFF--A   82 (339)
T ss_dssp             TTSEEEEESSHHHHTTTT--BT-HHHHHHHHHHHH-HCSSCSTTTSEEHHHHHHHHHHHHHS-ST-----TEEEEEE--E
T ss_pred             CCCCEEEECCCCccceecC-CCccccchhHHHHhh-hcccccccceeccchhhhhhhhhhcc-cc-----ccceeee--c
Confidence            4568999999886655566 556677777777765 111111 1111112334555555544 21     1278999  9


Q ss_pred             CCcccHHHHHHHHHH------hhcCCCeEEecCCCCCChHHHHhhc-------------CceeeEEEeecCCC---CCcC
Q 015435          107 LSGTGSLRVGAEFLA------RHYHQLTIYIPQPTWGNHPKVFTLA-------------GLSVKTYRYYDPAT---RGLN  164 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~------~~~~gd~Vi~~~p~y~~~~~~~~~~-------------G~~~~~v~~~~~~~---~~~d  164 (407)
                      +||++|++.++++..      ......+|+...-+|++........             ...+..+|..+...   ..-.
T Consensus        83 ~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  162 (339)
T PF00202_consen   83 NSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQAC  162 (339)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHH
Confidence            999999999998887      3334568998888888654422211             11234454421110   0001


Q ss_pred             hhhHHHHHHc--CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc
Q 015435          165 FQGLLEDLRA--APSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD  241 (407)
Q Consensus       165 ~~~l~~~i~~--~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~  241 (407)
                      .+.+++.+.+  .++..++++-+- +...|.. ++++.+++|.++|++||+++|+||+..+++..+.   .+....+. -
T Consensus       163 ~~~~~~~~~~~~~~~iaavivEPi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~---~~a~~~~g-v  237 (339)
T PF00202_consen  163 LNALEELIAALNADEIAAVIVEPI-QGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK---FFASEHYG-V  237 (339)
T ss_dssp             HHHHHHHHHHHHGGGEEEEEEESS-BTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS---SSGHHHHT-S
T ss_pred             HHHHHHHHHhhcCCcEEEEEEecc-ccccCccccccchhhehcccccccccceecccccccccccCC---ccceeccc-c
Confidence            1123333221  134456666443 3334544 6788999999999999999999999999987653   33333332 2


Q ss_pred             CCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          242 GGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       242 ~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      ..++++   ++|.++ .|+++|.+  ++.     +++.+.+.......+.+.+++++.++.+.|+-..        -+.+
T Consensus       238 ~PDiv~---~gK~l~-gG~p~sav--~~~-----~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~--------~~~~  298 (339)
T PF00202_consen  238 DPDIVT---FGKGLG-GGLPISAV--LGS-----EEIMEAFQPGSHGSTFGGNPLSCAAALATLEILE--------EEDL  298 (339)
T ss_dssp             SSSEEE---EEGGGG-TTSSEEEE--EEE-----HHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHH--------HTTH
T ss_pred             cCcccc---cccchh-hhhhcccc--ccc-----chhhccccccccccccccchHhhhhhhhHHHhhc--------cHHH
Confidence            233443   569998 67999999  576     5566655433333455678888888887776332        1123


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 015435          322 ADRIISMRQQLFDALSAR  339 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~  339 (407)
                      .++++++.+++.+.|+++
T Consensus       299 ~~~~~~~g~~l~~~L~~l  316 (339)
T PF00202_consen  299 LERVRELGERLREGLREL  316 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455555666666666543

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.56  E-value=2.6e-12  Score=123.02  Aligned_cols=211  Identities=17%  Similarity=0.128  Sum_probs=135.2

Q ss_pred             CCeeeeeeeeeecCCCccc-cchhHHHHHHHHhccccccccCCC-----CCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           31 PVKLNLGVGAYRTEEGKPL-VLNVVRKAEQLLVNDQSRVKEYLP-----IVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~-----~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      +.+||...-++.+|.|.+. +..+++++.+.+. .. ....|.-     ..-+..+++.+++++ +.       +..++ 
T Consensus        74 r~vinatg~v~~tNlg~s~l~~~vieAv~~~~~-~y-~~l~~~l~~g~~g~r~~~le~~lA~l~-ga-------e~alv-  142 (454)
T TIGR00474        74 RRVINATGVVLHTNLGRAPLAEEAIEAVTDAAR-GY-SNLEYDLETGKRGSRYSHVEGLLCELT-GA-------EDALV-  142 (454)
T ss_pred             cceeCCCCcEEeccCCCCCCCHHHHHHHHHHHh-cc-cchhccccccccchHHHHHHHHHHHHh-CC-------CcEEE-
Confidence            5677866556667766554 5566666655554 11 1112211     112578888899888 53       45667 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCC---C---hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCC
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWG---N---HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSG  178 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~---~---~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~  178 (407)
                       +++++.|+.+++   ..+.+||+|++++..|.   +   ....++..|++++.++.+    ...++++++++++  +++
T Consensus       143 -v~sg~aAi~l~l---~~l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~----~~~~l~dle~aI~--~~T  212 (454)
T TIGR00474       143 -VNNNAAAVLLAL---NTLAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT----NRTHLKDYEDAIT--ENT  212 (454)
T ss_pred             -ECCHHHHHHHHH---HHhCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC----CCCCHHHHHHhcC--cCC
Confidence             888889987773   45789999999986542   1   234566789999998662    2358899999987  678


Q ss_pred             cEEEEecCCCCCC--CCCCCHHHHHHHHHHHHHcCceeeeccccccccCCC---CCchhHHHHHHHHcCCcEEEEEecCc
Q 015435          179 AIVLLHACAHNPT--GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGS---LDADAQSVRMFVADGGECLVAQSYAK  253 (407)
Q Consensus       179 ~~v~i~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~s~sK  253 (407)
                      +++++ .+++|++  |.. ..-++++|+++|++||+++++|.....+...+   .. ..+.+..... ....++++|.+|
T Consensus       213 ~lv~~-~h~sN~~~~G~~-~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~-~~p~~~~~~~-~GaDiv~fSg~K  288 (454)
T TIGR00474       213 ALLLK-VHTSNYRIVGFT-EEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLP-DEPTVQEVIA-AGVDLVTFSGDK  288 (454)
T ss_pred             EEEEE-EccCcccccCCC-CCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCC-CCcccccHhH-cCCCEEEecCcc
Confidence            88777 7789996  531 12368899999999999999998633221100   00 0001111111 234588999999


Q ss_pred             cccccCCCcceeEEeec
Q 015435          254 NMGLYGERVGALSIVCK  270 (407)
Q Consensus       254 ~~~~~G~r~G~~~~v~~  270 (407)
                      .++.|  ..|++  +++
T Consensus       289 ~LgGp--~~G~i--~g~  301 (454)
T TIGR00474       289 LLGGP--QAGII--VGK  301 (454)
T ss_pred             ccCCC--eEEEE--EEC
Confidence            98644  46777  455

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.53  E-value=1.2e-12  Score=129.72  Aligned_cols=169  Identities=19%  Similarity=0.123  Sum_probs=112.1

Q ss_pred             CCC-cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH-HhhcCceee
Q 015435           74 IVG-LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV-FTLAGLSVK  151 (407)
Q Consensus        74 ~~g-~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~-~~~~G~~~~  151 (407)
                      ..| +.+..+.+|+.+ +.+      .-.++  ++|+|.++.++  +.+.+.+||.|++...+|.+.... +...|+.++
T Consensus       172 ~eG~i~eAq~~AA~~f-gAd------~tyFl--vNGTS~gn~a~--i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PV  240 (720)
T PRK13578        172 HEGAAKDAQKHAAKVF-NAD------KTYFV--LNGTSASNKVV--TNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV  240 (720)
T ss_pred             CChHHHHHHHHHHHHh-CCC------ceEEE--eCChhHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEE
Confidence            345 444455555555 652      34555  99999999998  566789999999999999998885 889999999


Q ss_pred             EEEeecCCCC----CcChhh-----HHHHHHcC-CC-------CcEEEEecCCCCCC--CCCCCHHHHHHHHHH-HHHcC
Q 015435          152 TYRYYDPATR----GLNFQG-----LLEDLRAA-PS-------GAIVLLHACAHNPT--GVDPTLEQWEQIRQL-MRSKG  211 (407)
Q Consensus       152 ~v~~~~~~~~----~~d~~~-----l~~~i~~~-~~-------~~~v~i~~~p~NPt--G~~~~~~~l~~i~~~-~~~~~  211 (407)
                      ++.-.- +.+    +++++.     +++++.+. +.       .+++++    .|||  |++++   +++|+++ |++++
T Consensus       241 Yl~P~~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvi----t~pTYdG~~yd---i~~I~~~~~h~~~  312 (720)
T PRK13578        241 YLETAR-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVI----QLGTYDGTIYN---ARQVVDKIGHLCD  312 (720)
T ss_pred             Eeeccc-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEE----ECCCCcceeec---HHHHHHHhhccCC
Confidence            987531 222    446544     88888765 22       245566    3555  99875   6777777 68888


Q ss_pred             ceeeeccccccc-cCCCCCchhHHH-HHHHHcCCcEEEEEecCccccccCCCcce
Q 015435          212 LLPFFDSAYQGF-ASGSLDADAQSV-RMFVADGGECLVAQSYAKNMGLYGERVGA  264 (407)
Q Consensus       212 ~~li~D~~y~~~-~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  264 (407)
                       .|++||||... .+.+.-++.+.. ......+..++++-|.+|.++  ++--+.
T Consensus       313 -~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~--alTQaS  364 (720)
T PRK13578        313 -YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQA--GFSQTS  364 (720)
T ss_pred             -cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcch--hhhhHh
Confidence             99999998544 443211111111 111222345699999999874  553333

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.52  E-value=2.9e-12  Score=122.63  Aligned_cols=286  Identities=13%  Similarity=0.155  Sum_probs=176.5

Q ss_pred             cccchhHHHHHHHH-hccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhc--
Q 015435           48 PLVLNVVRKAEQLL-VNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY--  124 (407)
Q Consensus        48 ~~~~~~~~~~~~~~-~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~--  124 (407)
                      +.++++..+.+... .++..+...| |  +...+.+.+..++....+.+ ....-.+  |+|||+++.++....+...  
T Consensus        72 ~~~~~~a~~~~~~~~~~nl~d~~~~-p--~a~~~E~~~v~~l~~l~~~~-~~~~G~~--t~GgTean~lal~aar~~~~~  145 (460)
T COG0076          72 TRVPPVAAELLVSALNKNLGDPDES-P--AAAELEERVVNMLSDLLGAP-EEASGTF--TSGGTEANLLALLAARERWRK  145 (460)
T ss_pred             CCCHHHHHHHHHHHHhhcCCCcccC-h--hHHHHHHHHHHHHHHHhCCC-CCCceEE--EcChHHHHHHHHHHHHHHHHH
Confidence            45555555554444 3222333344 3  55566666666663333332 2234567  9999999998764443321  


Q ss_pred             -C---C------CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCC
Q 015435          125 -H---Q------LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVD  194 (407)
Q Consensus       125 -~---g------d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~  194 (407)
                       .   +      .+|++++-.+.++.+.++.+|+....+++. +....+|++++++++.+.....+|+. ..++.+||. 
T Consensus       146 ~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~-~~~~~id~~~l~~~i~~~t~~g~vV~-~aGtT~~G~-  222 (460)
T COG0076         146 RALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTV-PTDYRIDVDALEEAIDENTIGGVVVG-TAGTTDTGS-  222 (460)
T ss_pred             HhhhcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEec-cCccccCHHHHHHHHHhhccCceEEE-EecCCCCCc-
Confidence             1   1      169999999999999999999999999994 43688999999999984321121444 667888988 


Q ss_pred             CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc-CCcEEEEEecCccccccCCCcceeEEeecChh
Q 015435          195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD-GGECLVAQSYAKNMGLYGERVGALSIVCKTED  273 (407)
Q Consensus       195 ~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~  273 (407)
                        .+++++|+++|+++++++.+|.||.++...=.+.+..    +... ....-+..+++|... .-..+||+  +.+|++
T Consensus       223 --iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~----~~f~l~~vdSIt~d~HK~g~-aP~~~G~i--l~rd~e  293 (460)
T COG0076         223 --IDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGR----WDFGLEGVDSITVDGHKYGL-APIGCGVV--LFRDEE  293 (460)
T ss_pred             --cCCHHHHHHHHHHcCCcEEEEccccceeecccCccch----hhcCCCCceEEEECcccccC-CCCCceEE--EEECHH
Confidence              7899999999999999999999998887521111111    1111 223345568899654 55788999  799884


Q ss_pred             -hHHHHHHHHhhhhh-----cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435          274 -VASRVESQLKLVIR-----PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH  347 (407)
Q Consensus       274 -~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  347 (407)
                       +.+.+.- ...+..     ..+...+..+-.++..+..   ++..-.+...++.++..+..+++.+.+++.+.   ++.
T Consensus       294 ~l~~~~~~-~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~---l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~---~e~  366 (460)
T COG0076         294 ALRRILIF-ADYYLPGGGIPNFTILGSRPGRQALALYAN---LRRLGREGYRKLLDRTLELARYLAEELEKLGD---FEL  366 (460)
T ss_pred             Hhhhhhhc-ccccCCCCCcCceeEeeccchHHHHHHHHH---HHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCC---cEe
Confidence             3332221 111111     1111222333222221111   00011255677888888999999999999874   665


Q ss_pred             cc-CCceeEEec
Q 015435          348 II-KQIGMFTFT  358 (407)
Q Consensus       348 ~~-~~~~~~~~~  358 (407)
                      .. |..+.+.|.
T Consensus       367 ~~~p~l~~V~fr  378 (460)
T COG0076         367 VNEPELPIVAFR  378 (460)
T ss_pred             ecCCccceEEEE
Confidence            54 555555554

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.52  E-value=1.3e-12  Score=129.32  Aligned_cols=169  Identities=12%  Similarity=0.115  Sum_probs=113.2

Q ss_pred             CCC-cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeE
Q 015435           74 IVG-LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKT  152 (407)
Q Consensus        74 ~~g-~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~  152 (407)
                      ..| +.+..+.+|+.+ +.+      .-.++  |+|+|.++.++  +.+.+.+||.|++...+|.+....+...|+.+++
T Consensus       193 ~~G~i~eAe~~AA~~f-gAd------~tyfv--vNGTS~~n~av--~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVY  261 (714)
T PRK15400        193 HSGPHKEAEEYIARVF-NAD------RSYMV--TNGTSTANKIV--GMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIY  261 (714)
T ss_pred             CChHHHHHHHHHHHHh-CCC------cEEEE--eCchHHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEE
Confidence            344 445555555655 652      34555  99999999988  4666889999999999999999999999999999


Q ss_pred             EEeecCCCC----CcC-----hhhHHHHHHcCCCCc---EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc
Q 015435          153 YRYYDPATR----GLN-----FQGLLEDLRAAPSGA---IVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY  220 (407)
Q Consensus       153 v~~~~~~~~----~~d-----~~~l~~~i~~~~~~~---~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y  220 (407)
                      ++.. .+.+    +++     ++.+++++.+.+..+   .+++ .+| +--|++++   +++|.+.|+.++  |++||||
T Consensus       262 l~P~-rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vi-t~p-TYdG~~yd---~~~I~~~~~~~~--ilvDEAw  333 (714)
T PRK15400        262 FRPT-RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVI-TNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAW  333 (714)
T ss_pred             eccc-ccccCCccCCCccccCHHHHHHHHHhCccccCccEEEE-ECC-CCccEecC---HHHHHHHhCCCC--EEEEccc
Confidence            8653 1222    345     899999998765433   4555 332 23499886   567777788887  6899998


Q ss_pred             ccc-cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435          221 QGF-ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG  263 (407)
Q Consensus       221 ~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  263 (407)
                      .+. .+.+.-++..++....+.++.++++.|.+|.++  ++.-+
T Consensus       334 gah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~--alTQa  375 (714)
T PRK15400        334 VPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQA  375 (714)
T ss_pred             hhhhccCcccCCcChhhcCCCCCCceEEEEchhhccc--chhHH
Confidence            654 343221122333211112256699999999874  55333

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.50  E-value=1.7e-12  Score=121.35  Aligned_cols=282  Identities=14%  Similarity=0.093  Sum_probs=168.5

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh-cCCCeEEecCCCCCCh-H-HHHhhcCc-eeeE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH-YHQLTIYIPQPTWGNH-P-KVFTLAGL-SVKT  152 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~-~~gd~Vi~~~p~y~~~-~-~~~~~~G~-~~~~  152 (407)
                      +.+..+.+.+.+ +...   +.+-+++  +.|||.+++++  +.+.+ .+|++|++.. .|..- . ++++..|+ ++..
T Consensus        41 ~~e~~~~L~~l~-~~~~---~~~v~~l--~GsGT~a~Eaa--~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~~v~~  111 (374)
T TIGR01365        41 LAEAIKKTREML-GVPA---DYLIGIV--PASDTGAVEMA--LWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLPDVRV  111 (374)
T ss_pred             HHHHHHHHHHHh-CCCC---CcEEEEE--CCchHHHHHHH--HHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCCCcEE
Confidence            445566666655 4210   0122555  99999999999  46667 4788988865 44322 4 77888999 4777


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHH-cCceeeeccccccccCCCCCch
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS-KGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~-~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      +..  +++..+++++++.      ... +++ ++..+.||+..+   +++++   ++ ++.++|+|.+- .++..+.+.+
T Consensus       112 l~~--~~g~~~~~~~ve~------~~~-v~~-vhnETSTGv~np---v~~i~---~~~~~~lliVDavS-s~g~~~l~~d  174 (374)
T TIGR01365       112 LEA--EYGKLPDLKKVDF------KND-VVF-TWNGTTSGVRVP---NGDFI---PADREGLTICDATS-AAFAQDLDYH  174 (374)
T ss_pred             EcC--CCCCCCCHHHcCC------CCC-EEE-ecCCCchheecc---ccccc---cccCCCcEEEEccc-hhcCCCCChh
Confidence            765  6778899998873      122 444 555778899765   44443   33 58999999974 3443322111


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHH---------HHh---------hhh-hcccCC
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVES---------QLK---------LVI-RPMYSS  292 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~---------~~~---------~~~-~~~~~~  292 (407)
                                 .-.+++.|.-|.+++|+ .++.+   +-+++..++...         .+.         ... .....+
T Consensus       175 -----------~iDv~~tgsQK~L~~pp-Gls~v---~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~T  239 (374)
T TIGR01365       175 -----------KLDVVTFSWQKVLGGEG-AHGML---ILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINT  239 (374)
T ss_pred             -----------HCcEEEEechhccCCCC-ceEEE---EECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCC
Confidence                       24577788899998764 23344   444554444331         011         000 112224


Q ss_pred             CChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcc----cccCCceeEEec-C-C-----
Q 015435          293 PPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDWS----HIIKQIGMFTFT-G-L-----  360 (407)
Q Consensus       293 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~~~~~~~~~~~-~-~-----  360 (407)
                      ++.....++..+++...     ++ .++++.++++++++++++.++++|....+.    ...+....+.+. + +     
T Consensus       240 P~v~~l~a~~~~l~~i~-----~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~  314 (374)
T TIGR01365       240 PSMLCVEDWLDALKWAE-----SIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDE  314 (374)
T ss_pred             hHHHHHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCcccccccc
Confidence            44444455554443110     12 488999999999999999999998310011    111111112221 2 3     


Q ss_pred             C-----HHHHHHhHhhccEEEcCCC--------eEE-ecCCCCCChhHHHHHHHHHHH
Q 015435          361 N-----SEQVAFMTKEYHIYMTSDG--------RIS-MAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       361 ~-----~~~~~~~l~~~gi~~~~gg--------Ris-~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      +     .+.+...|+++||.+.+|.        ||+ ++.++.+|++.+++.|.=+.+
T Consensus       315 ~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~  372 (374)
T TIGR01365       315 DAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFA  372 (374)
T ss_pred             chhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHh
Confidence            2     4557777777899998773        995 555888999999998864443

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.48  E-value=9.4e-12  Score=123.37  Aligned_cols=169  Identities=13%  Similarity=0.107  Sum_probs=109.6

Q ss_pred             CC-cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEE
Q 015435           75 VG-LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTY  153 (407)
Q Consensus        75 ~g-~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v  153 (407)
                      .| +.+..+.+|+.+ +.+      .-.++  |+|+|.++.++  +++.+.+||.|++...+|.+....+...|+.++++
T Consensus       194 ~G~i~eAe~~aA~~f-gAd------~tyfv--vNGTS~~n~av--~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl  262 (713)
T PRK15399        194 TGPHLEAEEYIARTF-GAE------QSYIV--TNGTSTSNKIV--GMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWL  262 (713)
T ss_pred             ChHHHHHHHHHHHHh-CCC------cEEEE--eCChHHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEe
Confidence            44 445555556655 652      34555  99999999998  46678999999999999999999999999999998


Q ss_pred             EeecCCCC----CcCh-----hhHHHHHHcCCCC---cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCcee-eecccc
Q 015435          154 RYYDPATR----GLNF-----QGLLEDLRAAPSG---AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP-FFDSAY  220 (407)
Q Consensus       154 ~~~~~~~~----~~d~-----~~l~~~i~~~~~~---~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l-i~D~~y  220 (407)
                      +-. .+.+    ++++     +.+++++.+.++.   ..+++ .+| +--|++++.   ++|.+.|   |+.+ ++||||
T Consensus       263 ~P~-~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvi-t~p-TYdGi~yd~---~~I~~~~---g~~~ilvDEAh  333 (713)
T PRK15399        263 KPT-RNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVI-TNS-TYDGLLYNT---DWIKQTL---DVPSIHFDSAW  333 (713)
T ss_pred             ccc-ccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEE-ECC-CCCceeeCH---HHHHHHh---CCCEEEEeccc
Confidence            642 1222    4455     8999999876543   35555 333 234998874   5555556   5655 699998


Q ss_pred             ccc-cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCccee
Q 015435          221 QGF-ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGAL  265 (407)
Q Consensus       221 ~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  265 (407)
                      .+. .+.+.-++..++......+..++++.|.+|.+  +++.-+..
T Consensus       334 gah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL--~alTQaS~  377 (713)
T PRK15399        334 VPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKML--AAFSQASL  377 (713)
T ss_pred             hhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccc--cccchhee
Confidence            644 34322122223221001123446688999986  46644444

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.45  E-value=8.1e-12  Score=109.19  Aligned_cols=330  Identities=14%  Similarity=0.136  Sum_probs=203.2

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc-ccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS-RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      .+++++||=.+-...|-| ...+.++.+..+++..-.- ....|.  .-..++.+.+.+++ +-       +.++-  ++
T Consensus        57 eGk~ylDflsaysaVnqG-hchpki~~aLqeq~~kLtlssrafYn--d~~~~f~~~vt~lf-~~-------~kvlp--mn  123 (427)
T KOG1402|consen   57 EGKEYLDFLSAYSAVNQG-HCHPKIIKALQEQADKLTLSSRAFYN--DVLGEFAEYVTKLF-GY-------DKVLP--MN  123 (427)
T ss_pred             CccchhhhhhhhhhcccC-CCCHHHHHHHHHHHhHhhhhhHHHhh--hhHHHHHHHHHHhc-Cc-------ceeee--cc
Confidence            467777776654334455 6677788877777751111 111232  23456677777766 42       56766  88


Q ss_pred             CcccHHHHHHHHHHhhc------C-CCeEEecC-CCCCChHHHHhhcCce--------------eeEEEeecCCCCCcCh
Q 015435          108 SGTGSLRVGAEFLARHY------H-QLTIYIPQ-PTWGNHPKVFTLAGLS--------------VKTYRYYDPATRGLNF  165 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~------~-gd~Vi~~~-p~y~~~~~~~~~~G~~--------------~~~v~~~~~~~~~~d~  165 (407)
                      -|.+|.+.+.++.+.+.      | ...++++. .+|.+-.-.+-..+.+              +..+|.       -|.
T Consensus       124 TGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y-------~d~  196 (427)
T KOG1402|consen  124 TGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPY-------GDA  196 (427)
T ss_pred             cchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeecc-------CCH
Confidence            88999999999888653      3 23344433 3443221111111111              222222       278


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++..+.+ ++.+.+++ -.-+-..|++ .++..+++..++|.+|++++|.||+..++...|   +.+....  +.-..
T Consensus       197 eale~~l~~-~~vaaFiv-EPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTG---k~la~d~--env~P  269 (427)
T KOG1402|consen  197 EALEVALKS-PNVAAFIV-EPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTG---KLLACDY--ENVRP  269 (427)
T ss_pred             HHHHHHhcC-CCeeEEEe-eccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccC---cEEEeeh--hhcCC
Confidence            899999884 34444444 4445566776 667799999999999999999999999998875   2332211  11122


Q ss_pred             EEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      .+++  +.|.++ .| .+++.+  ++.     +.++..+.......+++.+++++.++.+.|+-..        -+++.+
T Consensus       270 Divi--lgKalS-GG~~Pvsav--l~~-----~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~--------eekL~e  331 (427)
T KOG1402|consen  270 DIVI--LGKALS-GGVYPVSAV--LAD-----DDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIV--------EEKLVE  331 (427)
T ss_pred             CeEE--Eecccc-CCeeeeEEE--Eec-----HHHHhccCCCccccccCCChHHHHHHHHHHHHHH--------HHHHHH
Confidence            2333  678887 44 477777  576     6677767666666677889999998888876432        346778


Q ss_pred             HHHHHHHHHHHHHHhcCCC--CCcccccCCceeEEecCC-----C-HHH--HHHhHhhccEEEcCC-C---eEEecC-CC
Q 015435          324 RIISMRQQLFDALSARGTP--GDWSHIIKQIGMFTFTGL-----N-SEQ--VAFMTKEYHIYMTSD-G---RISMAG-LS  388 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~-----~-~~~--~~~~l~~~gi~~~~g-g---Ris~~~-~~  388 (407)
                      +.+++-+.++..|+++...  .-.+.....| ++.-+.+     + .+.  +-..+.+.|+..-|- |   |++..- ++
T Consensus       332 ra~~lG~~l~~~L~~l~~~~p~~v~~VRGrG-l~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH~~IiRfaPPL~I~  410 (427)
T KOG1402|consen  332 RAAKLGEILRDQLNKLQKKFPHVVKEVRGRG-LLNAIVINPSKTSGQDAWDVCLALKENGLLAKPTHGNIIRFAPPLVIS  410 (427)
T ss_pred             HHHHHHHHHHHHHHhccccccchhheeeccc-eEEEEEeccccccchhHHHHHHcccccccccCCCCCCeEEecCCcccC
Confidence            8888889999999987532  1122233333 3433322     2 222  223446678877774 3   776542 68


Q ss_pred             CCChhHHHHHHHHHHH
Q 015435          389 SKTVPHLTDAIHAAVT  404 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~  404 (407)
                      ++|+++.++.|+..+.
T Consensus       411 e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  411 EEDLREGIEAIEKTIA  426 (427)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8999999999988764

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.42  E-value=1.3e-10  Score=113.31  Aligned_cols=261  Identities=12%  Similarity=0.138  Sum_probs=157.7

Q ss_pred             CCCCCCcHHHHHHHHHHHhCCCCC----------CC-CCCceEEeecCCcccHHHHHHHHHHhhc---------------
Q 015435           71 YLPIVGLVDFNKLSAKLILGADSP----------AI-KDNRVTTVQCLSGTGSLRVGAEFLARHY---------------  124 (407)
Q Consensus        71 y~~~~g~~~l~~~~a~~~~~~~~~----------~~-~~~~i~~~~t~g~t~a~~~~~~~~~~~~---------------  124 (407)
                      |...+...++.+.+.+|+...-+.          .. +..--.+  |+|||+|+..++...+...               
T Consensus       121 ~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~--tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl  198 (522)
T TIGR03799       121 IETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAF--CSGGTVANITALWVARNRLLKADGDFKGVAREGL  198 (522)
T ss_pred             eecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEE--cCchHHHHHHHHHHHHHHhccccccccccccccc
Confidence            333445556667777776222110          00 1123567  9999999988864443321               


Q ss_pred             ---------CCCeEEecCCCCCChHHHHhhcCc---eeeEEEeecCCCCCcChhhHHHHHHcC--CC-CcEEEEecCCCC
Q 015435          125 ---------HQLTIYIPQPTWGNHPKVFTLAGL---SVKTYRYYDPATRGLNFQGLLEDLRAA--PS-GAIVLLHACAHN  189 (407)
Q Consensus       125 ---------~gd~Vi~~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~--~~-~~~v~i~~~p~N  189 (407)
                               ++..|++++-.|.+..++++..|.   +++.+|.  +.++.+|+++|++.+.+.  .+ .+++++.+..++
T Consensus       199 ~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~--d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt  276 (522)
T TIGR03799       199 FAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKT--DANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTT  276 (522)
T ss_pred             hhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEe--CCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCc
Confidence                     124688888889999999998888   7899998  345789999999998631  23 344444445567


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc-CCcEEEEEecCccccccCCCcceeEEe
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD-GGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      .||.   .+++++|+++|+++|+++.+|.+|.+...-.   +  ..+..... .....+..+.+|.++.| ..+|.+  +
T Consensus       277 ~tGa---iDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~---~--~~r~~l~gle~aDSit~d~HK~l~~P-~g~G~l--l  345 (522)
T TIGR03799       277 ETGN---IDPLDEMADIAQELGCHFHVDAAWGGATLLS---N--TYRHLLKGIERADSVTIDAHKQLYVP-MGAGMV--L  345 (522)
T ss_pred             CCCC---cCCHHHHHHHHHHcCCeEEEEchhhhHHHhC---H--HHHHHhcCchhCCEEEEChhhcCCcC-cccEEE--E
Confidence            8999   5568889999999999999999987544311   1  11111221 23456788999966533 557888  6


Q ss_pred             ecChhhHHHHHHHHhhhhh-------cccC--CCChh--HHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          269 CKTEDVASRVESQLKLVIR-------PMYS--SPPIH--GASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALS  337 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  337 (407)
                      .++++..+.+.........       ....  +.+..  ...++...+.        ...++++.++..+.++++.+.++
T Consensus       346 vr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG--------~~G~~~ii~~~~~la~~l~~~L~  417 (522)
T TIGR03799       346 FKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIG--------RKGYELLIDQSIEKAKYFADLIQ  417 (522)
T ss_pred             EeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            7776654332221000000       0011  11211  1222222222        14577888888999999999998


Q ss_pred             hcCCCCCccccc-CCceeEEe
Q 015435          338 ARGTPGDWSHII-KQIGMFTF  357 (407)
Q Consensus       338 ~~~~~~~~~~~~-~~~~~~~~  357 (407)
                      +.+.   +++.. |.-+.+.|
T Consensus       418 ~~~~---~el~~~p~l~iv~F  435 (522)
T TIGR03799       418 QQPD---FELVTEPELCLLTY  435 (522)
T ss_pred             hCCC---eEEecCCCccEEEE
Confidence            8743   66543 34444444

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.42  E-value=2e-10  Score=102.80  Aligned_cols=237  Identities=14%  Similarity=0.191  Sum_probs=137.4

Q ss_pred             CceEE-eecCCcccHHHHHHHHHHhhcCCCeEEecC-CCCCChHHHH----------hhcCceeeEEEeecCCCCCcChh
Q 015435           99 NRVTT-VQCLSGTGSLRVGAEFLARHYHQLTIYIPQ-PTWGNHPKVF----------TLAGLSVKTYRYYDPATRGLNFQ  166 (407)
Q Consensus        99 ~~i~~-~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~-p~y~~~~~~~----------~~~G~~~~~v~~~~~~~~~~d~~  166 (407)
                      +..++ -|..|||+|+..+  +...+.|||+++... .-|.....++          ..+|++...+++.  +++.+|++
T Consensus        70 E~ALVRpq~vSGTHAi~~~--Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~--~dg~~D~~  145 (403)
T PF06838_consen   70 EDALVRPQFVSGTHAIALA--LFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLT--EDGTIDWE  145 (403)
T ss_dssp             SEEEEETTS-SHHHHHHHH--HHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B---TTSSB-HH
T ss_pred             hhhhhcccccchHHHHHHH--HHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeec--CCCCcCHH
Confidence            44444 5677899999999  577799999988654 5677666655          4578899999994  45789999


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc--CceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK--GLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      .++++++  +++++++|.=+....+=..++.++++++++++++.  ++++++|.+|.+|+..-   ++       .+-..
T Consensus       146 ~i~~~~~--~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~---EP-------~~vGA  213 (403)
T PF06838_consen  146 AIKKALK--PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ---EP-------TEVGA  213 (403)
T ss_dssp             HHHHHHH--TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS----G-------GGGT-
T ss_pred             HHHHhhc--cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc---Cc-------cccch
Confidence            9999999  78999999766666666679999999999999875  79999999999999652   11       12245


Q ss_pred             EEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhh-hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLV-IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      .++.+|+-|+.| .|+ +.|..  ++..+++.++...++..- .......+..........++-           ...+.
T Consensus       214 Dl~aGSLIKNpG-GgiAptGGY--IaGr~~lVe~~a~RLTaPGiG~e~G~t~~~~R~~~QGlFl-----------AP~vV  279 (403)
T PF06838_consen  214 DLMAGSLIKNPG-GGIAPTGGY--IAGRKDLVERAAYRLTAPGIGKEVGATLGTNRLMFQGLFL-----------APHVV  279 (403)
T ss_dssp             SEEEEETTSGGG-TTT-SS-EE--EEESHHHHHHHHHHHS-TTTGGGSS--TTTHHHHHHHHHH-----------HHHHH
T ss_pred             hheeccceeCCC-CCccCcCCE--EechHHHHHHHHhhhcCCccccccccCcchHHHHHhHHhh-----------chHHH
Confidence            689999999988 454 44443  366677666665555321 111111111111111111111           22444


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCccccc----CCceeEEecCC-CHHHHHHhH
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHII----KQIGMFTFTGL-NSEQVAFMT  369 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~l  369 (407)
                      ....+-.-+....++++|    +++.+    +.+-+..-+.+ +.+.+...+
T Consensus       280 ~eAlKgaif~A~~fe~lG----~~v~P~~~~~R~DiIQai~l~~~e~l~~FC  327 (403)
T PF06838_consen  280 GEALKGAIFAAALFEKLG----FEVSPKPDDPRSDIIQAIELGSPEKLIAFC  327 (403)
T ss_dssp             HHHHHHHHHHHHHHHHTT-----EEES-TTS--SSS-EEEE-SSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcC----CcCCCCCCCCCCceEEEEECCCHHHHHHHH
Confidence            555555566677777888    44443    34445555555 455544443

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.41  E-value=5.8e-11  Score=110.51  Aligned_cols=331  Identities=14%  Similarity=0.112  Sum_probs=191.6

Q ss_pred             CCCCeeeeeeeeeecCCCcc-ccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           29 TSPVKLNLGVGAYRTEEGKP-LVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      +....|||-+-.     + . .|.+...+++.. .     .-.|.......+|.+.+++++ +.       +.+++  |+
T Consensus        39 s~dV~IDLrSDT-----g-T~apS~~m~aAM~~-G-----DD~Y~gdpSv~~Lee~vael~-G~-------E~alp--th   96 (467)
T TIGR02617        39 SEDVFIDLLTDS-----G-TGAVTQSMQAAMMR-G-----DEAYSGSRSYYALAESVKNIF-GY-------QYTIP--TH   96 (467)
T ss_pred             CCCeEEECccCC-----C-CCCCCHHHHHHHHc-C-----CcccccCchHHHHHHHHHHHh-CC-------ceEEE--CC
Confidence            345667776432     2 3 255555555443 1     234777778889999999988 75       67888  99


Q ss_pred             CcccHHHHHHHHHHhhc-CCCeEEecCC--------CCCChHHHHhhcCceeeEEEee--------cCCCCCcChhhHHH
Q 015435          108 SGTGSLRVGAEFLARHY-HQLTIYIPQP--------TWGNHPKVFTLAGLSVKTYRYY--------DPATRGLNFQGLLE  170 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~-~gd~Vi~~~p--------~y~~~~~~~~~~G~~~~~v~~~--------~~~~~~~d~~~l~~  170 (407)
                      .|+++-.++..++  +. +||++++..+        .|..........|+.++.++..        .+..+.+|++++++
T Consensus        97 qGRgaE~Il~~~~--~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~  174 (467)
T TIGR02617        97 QGRGAEQIYIPVL--IKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLER  174 (467)
T ss_pred             CCchHHHHHHHhh--cccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHH
Confidence            9999998885443  66 6777764332        2333455677889888876431        22346789999999


Q ss_pred             HHHcC--CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccc----c------cCCCCCchhHHHHHH
Q 015435          171 DLRAA--PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG----F------ASGSLDADAQSVRMF  238 (407)
Q Consensus       171 ~i~~~--~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~----~------~~~~~~~~~~~~~~~  238 (407)
                      .+.+.  .+...+...-..|.-.|+.+|.+.++++.++|++||+.++.|.+-..    |      ++.     ..++..+
T Consensus       175 ~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~-----~~si~eI  249 (467)
T TIGR02617       175 GIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYK-----NWSIEQI  249 (467)
T ss_pred             HHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhc-----CCCHHHH
Confidence            99852  12222222112223358899999999999999999999999997421    1      121     1233333


Q ss_pred             H-H-cCCcEEEEEecCccccccCCCcceeEEeecCh---hhHHHHHHHHhhhhhc-ccCCCChhHHHHHHHHhcChhhHH
Q 015435          239 V-A-DGGECLVAQSYAKNMGLYGERVGALSIVCKTE---DVASRVESQLKLVIRP-MYSSPPIHGASIVATILKDSTMYK  312 (407)
Q Consensus       239 ~-~-~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~  312 (407)
                      . . ..-...+..|+||.++.|   +|.+. +.+++   ++.+++....-..-.. .+.+.+.-.+.+++.-|...- .+
T Consensus       250 ~rE~~~~aDsvt~slsKglgAp---vGg~L-ag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~-~~  324 (467)
T TIGR02617       250 TRETYKYADMLAMSAKKDAMVP---MGGLL-CFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM-NL  324 (467)
T ss_pred             HHHhhccCCEEEEEcCCCCCCc---ccceE-EecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcc-cH
Confidence            2 1 122335667899987644   66652 45555   2222222211111111 122334444444443343221 00


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC-------C-----CHHH-HHHhHhhccEEEcCC
Q 015435          313 EWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG-------L-----NSEQ-VAFMTKEYHIYMTSD  379 (407)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~-~~~~l~~~gi~~~~g  379 (407)
                         +++.   .+ -+..++|.+.|.+.|.    .+.. .||--++++       +     .+.. +.++-.+.||...--
T Consensus       325 ---~yl~---~r-i~qv~yl~~~L~~~Gv----pi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~  392 (467)
T TIGR02617       325 ---DWLA---YR-INQVQYLVNGLEEIGV----VCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEI  392 (467)
T ss_pred             ---HHHH---HH-HHHHHHHHHHHHhCCC----cEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEee
Confidence               1222   22 2356788999998884    4444 455445442       2     2222 334445567753221


Q ss_pred             -----------C----------eEEecC--CCCCChhHHHHHHHHHHHh
Q 015435          380 -----------G----------RISMAG--LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       380 -----------g----------Ris~~~--~~~e~i~~~~~~l~~~l~~  405 (407)
                                 |          |+++..  .|.+.++..++++..+.++
T Consensus       393 G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~  441 (467)
T TIGR02617       393 GSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_pred             cceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence                       1          888764  3668899999999988754

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.38  E-value=9.3e-11  Score=121.40  Aligned_cols=276  Identities=16%  Similarity=0.153  Sum_probs=158.4

Q ss_pred             CceEEeecCCcccHHHHHHHHHHhh--cCCC----eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHH
Q 015435           99 NRVTTVQCLSGTGSLRVGAEFLARH--YHQL----TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDL  172 (407)
Q Consensus        99 ~~i~~~~t~g~t~a~~~~~~~~~~~--~~gd----~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i  172 (407)
                      +++.+ +.+||+++....+...+..  .+|+    +|++++..|......+...|++++.++++  .++.+|+++|++++
T Consensus       558 d~~sl-~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d--~~G~iD~~~L~~~i  634 (954)
T PRK05367        558 DAVSL-QPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACD--ENGNIDLDDLRAKA  634 (954)
T ss_pred             CCEEE-CccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCC--CCCCcCHHHHHHHH
Confidence            46666 2445556554432223322  3555    59999999988888899999999999983  34689999999999


Q ss_pred             HcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          173 RAA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       173 ~~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                      ... .+..++++ .+|++- |.+  .+++++|+++|+++|+++++|.++...... ..    .    .......++..|.
T Consensus       635 ~~~~~~la~V~i-t~pst~-G~~--e~~I~eI~~i~h~~G~~v~VDgA~~~al~~-l~----~----pg~~GADi~~~s~  701 (954)
T PRK05367        635 EEHADNLAAIMI-TYPSTH-GVF--EETIREICEIVHEHGGQVYLDGANMNAQVG-LA----R----PGDIGADVSHLNL  701 (954)
T ss_pred             hccCCCeEEEEE-EcCCCC-eee--cCCHHHHHHHHHHcCCEEEEECcChhhccC-CC----C----hhhcCCCEEEecC
Confidence            743 22344444 555543 332  346999999999999999999997422111 10    0    1112345778889


Q ss_pred             Ccccc----ccCCCcceeEEeecChhhHHHHHHHHhhhh-----h---cccCCCChhHHH-H---HHHHhcChhhHHhHH
Q 015435          252 AKNMG----LYGERVGALSIVCKTEDVASRVESQLKLVI-----R---PMYSSPPIHGAS-I---VATILKDSTMYKEWT  315 (407)
Q Consensus       252 sK~~~----~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~-~---~~~~l~~~~~~~~~~  315 (407)
                      +|.|+    ..|-.+|.+  .+.     +.+...+....     .   .........++. .   +..++....     .
T Consensus       702 HK~f~~P~G~GGPg~G~l--~vr-----~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G-----~  769 (954)
T PRK05367        702 HKTFCIPHGGGGPGVGPI--GVK-----AHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMG-----A  769 (954)
T ss_pred             cccCCCCcCCCCCceEEE--eec-----ccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHC-----H
Confidence            99874    234446777  344     22332222211     0   011111222111 1   111111111     1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC-----CceeEEec------CCCHHHHHHhHhhccEEEcC-----C
Q 015435          316 LELKAMADRIISMRQQLFDALSARGTPGDWSHIIK-----QIGMFTFT------GLNSEQVAFMTKEYHIYMTS-----D  379 (407)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-----~~~~~~~~------~~~~~~~~~~l~~~gi~~~~-----g  379 (407)
                      +.+.+..++...+.+|+.+.|.+. .+  ..+..+     ...++.+.      +...+.+.+.|.++|+....     .
T Consensus       770 ~Glr~~a~~~~~~A~Yl~~~L~~~-~~--~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv~  846 (954)
T PRK05367        770 EGLRQATEVAILNANYIAKRLKDH-YP--VLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPVA  846 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-cC--ccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecCCccC
Confidence            345555555668888999988763 11  222111     12333343      23445566555778886633     2


Q ss_pred             C--eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          380 G--RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       380 g--Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                      |  ||+... .+++|+++++++++++.++
T Consensus       847 ~~l~i~ptE~~s~~elDr~~~al~~i~~e  875 (954)
T PRK05367        847 GTLMVEPTESESKAELDRFCDAMIAIRAE  875 (954)
T ss_pred             CEEEEEeeecCCHHHHHHHHHHHHHHHHH
Confidence            2  776654 3679999999999887654

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.35  E-value=6.5e-10  Score=113.43  Aligned_cols=295  Identities=16%  Similarity=0.152  Sum_probs=170.0

Q ss_pred             cccCCCC---CCc----HHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh------cCCCeEEecCC
Q 015435           68 VKEYLPI---VGL----VDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH------YHQLTIYIPQP  134 (407)
Q Consensus        68 ~~~y~~~---~g~----~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~------~~gd~Vi~~~p  134 (407)
                      .+.|.|.   +|.    .++.+.+++.. |.       +++-+ +.+||+++-...+...+..      ...+.|+++..
T Consensus       516 ~hPyqPe~~sqG~lq~i~elq~~l~elt-Gm-------d~~Sl-~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~s  586 (939)
T TIGR00461       516 IHPFQPSNQVEGYQELIAQLEKWLCSIT-GF-------DAISL-QPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVS  586 (939)
T ss_pred             cCCCCchHHhHHHHHHHHHHHHHHHHHH-CC-------CCccc-CCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcc
Confidence            5666664   344    44444555544 43       23332 3666666665432223321      12356889999


Q ss_pred             CCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCce
Q 015435          135 TWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLL  213 (407)
Q Consensus       135 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~  213 (407)
                      .+......+...|++++.+++  +.++.+|+++|++++++. .++.++++ .+|+| +|.+-  +++++|+++|+++|.+
T Consensus       587 aHgtnPasa~~~G~~Vv~V~~--d~~G~iDle~L~~~i~~~~~~taaV~i-T~pst-~G~~e--~~I~eI~~iah~~G~~  660 (939)
T TIGR00461       587 AHGTNPASAAMAGMQVVPVNC--DQDGNIDLVDLKNKAEQHGDELAAVMV-TYPST-HGVFE--PTIQHACDIVHSFGGQ  660 (939)
T ss_pred             ccCcCHHHHHHCCCEEEEecc--CCCCCcCHHHHHHHHhhcCCceEEEEE-EeCCc-Cceec--ccHHHHHHHHHHcCCE
Confidence            998888889999999999998  345789999999999842 35566666 78888 78853  2499999999999999


Q ss_pred             eeecccccc-ccCCCCCchhHHHHHHHHcCCcEEEEEecCcccc----ccCCCcceeEEeecChhhHHHHHHHHhhh---
Q 015435          214 PFFDSAYQG-FASGSLDADAQSVRMFVADGGECLVAQSYAKNMG----LYGERVGALSIVCKTEDVASRVESQLKLV---  285 (407)
Q Consensus       214 li~D~~y~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~----~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---  285 (407)
                      +++|.++.. +..-.          -+...+-.++.+|..|.|+    ..|-.+|.+  .++ +.    +...+...   
T Consensus       661 v~VDgAq~~al~~l~----------~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i--~vr-~~----L~~~lPg~~v~  723 (939)
T TIGR00461       661 VYLDGANMNAQVGLT----------SPGDLGADVCHLNLHKTFCIPHGGGGPGMGPI--GVK-SH----LIPFLPKHDVV  723 (939)
T ss_pred             EEEEecChhhCCCCC----------CccccCCCEEEecCCccCCCCCCCCCCCeEEE--EEh-hh----chhhcCCCccc
Confidence            999999743 22110          0122345688888999764    345556887  455 22    22222100   


Q ss_pred             ---------h--hcccC-CCCh-hHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC-C
Q 015435          286 ---------I--RPMYS-SPPI-HGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK-Q  351 (407)
Q Consensus       286 ---------~--~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~  351 (407)
                               +  +.... +... .....+-.++.-..     .+.+.+..+....+..|+.+.|.+ +    ++..-+ .
T Consensus       724 ~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG-----~~GL~~~a~~ailnAnYl~~rL~~-~----~~~l~~~~  793 (939)
T TIGR00461       724 SMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMG-----NEGLPKASVVAILNANYMATRLKD-H----YPILFVGT  793 (939)
T ss_pred             ccccCCCCccccccccccccCcHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHhhc-c----CcccccCC
Confidence                     0  00000 0111 11111111122111     134666667777788999999976 3    222211 1


Q ss_pred             cee----EE--ec------CCCHHHHHHhHhhccEEEcC-C----C----eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          352 IGM----FT--FT------GLNSEQVAFMTKEYHIYMTS-D----G----RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       352 ~~~----~~--~~------~~~~~~~~~~l~~~gi~~~~-g----g----Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+.    |+  +.      +...+.+.+.|.++|+.... +    |    +.+-.. +++|++++++++.++-++
T Consensus       794 ~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~e-skeelD~f~~al~~I~~e  867 (939)
T TIGR00461       794 LKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESE-SLEELDRFCDAMIAIKEE  867 (939)
T ss_pred             CCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccC-CHHHHHHHHHHHHHHHHH
Confidence            122    21  11      23455555555557885421 1    2    334443 678999999999877654

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PLN02452 phosphoserine transaminase

Probab=99.35  E-value=1.2e-10  Score=108.85  Aligned_cols=322  Identities=16%  Similarity=0.141  Sum_probs=184.5

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc-------ccccCCCC--CCcHHHHHHHHHHHhCCCCCCCCCCce
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS-------RVKEYLPI--VGLVDFNKLSAKLILGADSPAIKDNRV  101 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~y~~~--~g~~~l~~~~a~~~~~~~~~~~~~~~i  101 (407)
                      ..+++|+-|=    .  ..|+++.+++...+. +..       ...++++.  .-+.+.++.+.+++ +...    ..++
T Consensus         6 ~~~~~f~pGP----~--~lp~~Vl~~~~~~~~-~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~-~~p~----~y~v   73 (365)
T PLN02452          6 GRVFNFSAGP----A--TLPANVLAKAQAELY-NWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELL-DIPD----NYEV   73 (365)
T ss_pred             CceEeeeCCC----C--CCCHHHHHHHHHHHh-cccccCccccccCCCchHHHHHHHHHHHHHHHHh-CCCC----CceE
Confidence            4567787551    1  346677777766653 100       12223332  22556666677766 4210    1244


Q ss_pred             EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEEEee-cCCCCCcChhhHHHHHHcCCCC
Q 015435          102 TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTYRYY-DPATRGLNFQGLLEDLRAAPSG  178 (407)
Q Consensus       102 ~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~  178 (407)
                      +++ ..|||.+++++  .+..+.+|+++++...+..+  +.+.++.+|...+..... ......++++++    ...++.
T Consensus        74 ~~l-~Gsgt~~~ea~--~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  146 (365)
T PLN02452         74 LFL-QGGASTQFAAI--PLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEW----ELTPDA  146 (365)
T ss_pred             EEE-eCccHHHHHHH--HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHc----CCCCCC
Confidence            442 78889999999  46667799998888765543  344666777643333211 111124566654    222445


Q ss_pred             cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc
Q 015435          179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY  258 (407)
Q Consensus       179 ~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  258 (407)
                      ..+.+ ++..+.||+.++  ++.++.      ++++|+|.+.+ +...+.     .+..+     .+ ...|..|.+|.+
T Consensus       147 ~~v~~-~hnETstGv~~~--~~~~i~------~~~lvVDa~Ss-~g~~pi-----dv~~~-----~v-~~~saqK~lGP~  205 (365)
T PLN02452        147 KFVHI-CANETIHGVEFK--DYPDVG------NVPLVADMSSN-FLSKPV-----DVSKY-----GV-IYAGAQKNVGPS  205 (365)
T ss_pred             cEEEE-CCCCCCCcEecC--cccccC------CCeEEEECCcc-ccCccc-----CHHHc-----CE-EEEecccccCCC
Confidence            66666 666778899644  455553      38999999744 333222     12111     13 336999999988


Q ss_pred             CCCcceeEEeecChhhHHHHHHHHhhh--------hhcccCCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHHH
Q 015435          259 GERVGALSIVCKTEDVASRVESQLKLV--------IRPMYSSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISMR  329 (407)
Q Consensus       259 G~r~G~~~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~  329 (407)
                      |  +|.+  +++ +++.++.......+        ...++.+|+..+..++..+++-..     .. .++.+.++.++++
T Consensus       206 G--l~~v--~vr-~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~-----~~gGl~~~~~r~~~~a  275 (365)
T PLN02452        206 G--VTIV--IIR-KDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLL-----AQGGLKAMEKRNIRKA  275 (365)
T ss_pred             C--eEEE--EEc-HHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHH-----HccCHHHHHHHHHHHH
Confidence            7  4666  344 33333221110101        011224667777777776665321     12 4788899999999


Q ss_pred             HHHHHHHHhc-CCCCCccc-ccC--Cce-eEEec--CCC-HHHHHHhHhhccEEEcCC-----C-eEEecC-CCCCChhH
Q 015435          330 QQLFDALSAR-GTPGDWSH-IIK--QIG-MFTFT--GLN-SEQVAFMTKEYHIYMTSD-----G-RISMAG-LSSKTVPH  394 (407)
Q Consensus       330 ~~l~~~l~~~-~~~~~~~~-~~~--~~~-~~~~~--~~~-~~~~~~~l~~~gi~~~~g-----g-Ris~~~-~~~e~i~~  394 (407)
                      +++++.|++. |.   +.. ..+  +.. .+.|.  +.. .+...+.++++|+...+|     | |+|... ++.++++.
T Consensus       276 ~~l~~~l~~~~G~---y~~~~~~~~rs~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~  352 (365)
T PLN02452        276 DLLYDAIDESNGF---YVCPVEKSVRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEK  352 (365)
T ss_pred             HHHHHHHHhCCCc---ccCCCChHHhCCeEEEEEcCCchhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHH
Confidence            9999999885 42   111 111  122 22222  322 223456667799999987     2 998654 78899999


Q ss_pred             HHHHHHHHHHh
Q 015435          395 LTDAIHAAVTR  405 (407)
Q Consensus       395 ~~~~l~~~l~~  405 (407)
                      +++.++++-++
T Consensus       353 L~~~m~~f~~~  363 (365)
T PLN02452        353 LVAFMKDFQAK  363 (365)
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=1.7e-11  Score=111.62  Aligned_cols=287  Identities=13%  Similarity=0.150  Sum_probs=171.6

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEe
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRY  155 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~  155 (407)
                      -+.++.+.+|+++ +.      ++.+++  ..| -..+...  +-+.+.+|.-|+-.+..+......++..|+.++.+..
T Consensus       183 ~hkelE~l~A~f~-g~------e~a~vF--~mG-f~TNs~~--~p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkH  250 (519)
T KOG1357|consen  183 EHKELEELVARFL-GV------EDAIVF--SMG-FATNSMN--IPSLLGKGSLIISDELNHASLITGARLSGATTRVFRH  250 (519)
T ss_pred             HHHHHHHHHHHhc-CC------cceEEE--ecc-ccccccC--cceeecCCcceeeccccchheeccccccCceEEEEec
Confidence            3677788888877 54      256666  333 2222222  2344778888888889999999999999999999977


Q ss_pred             ecCCCCCcChhhHHHHHHc----C-C-----CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435          156 YDPATRGLNFQGLLEDLRA----A-P-----SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS  225 (407)
Q Consensus       156 ~~~~~~~~d~~~l~~~i~~----~-~-----~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~  225 (407)
                      +       |.++|++.+.+    . |     -++++++.-.-..--|.   .-++.+++.++++|..+|+.||+++....
T Consensus       251 N-------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~---iv~Lp~vvalkkkykayl~lDEAHSiGA~  320 (519)
T KOG1357|consen  251 N-------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGT---IVDLPEVVALKKKYKAYLYLDEAHSIGAM  320 (519)
T ss_pred             C-------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCe---ecccHHHHHhhccccEEEEeecccccccc
Confidence            4       33444444432    1 2     22344442222223455   34688999999999999999999875443


Q ss_pred             CCCCchhHHHHHH--HHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHH
Q 015435          226 GSLDADAQSVRMF--VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT  303 (407)
Q Consensus       226 ~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (407)
                      +.   -...+..+  .+..+..|.+++|+|.++..|   |++   +.++++.+.++...... -...+.+++.+|+....
T Consensus       321 g~---tGrgvce~~g~d~~dvDImMGtftKSfga~G---Gyi---agsk~lid~lrt~s~~~-~yat~~sppvaqq~~ss  390 (519)
T KOG1357|consen  321 GA---TGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYI---AGSKELIDYLRTPSPSA-LYATSLSPPVAQQILTS  390 (519)
T ss_pred             CC---CCcceeeccCCCchhheeecceehhhccccc---cee---cCcHHHHhhhccCCCce-eecccCChHHHHHHHHH
Confidence            21   11122222  123467799999999999877   777   55554443333211111 11222444555543332


Q ss_pred             H--hcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCce----eEEec-CCCHHHHHHhHhhccEEE
Q 015435          304 I--LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIG----MFTFT-GLNSEQVAFMTKEYHIYM  376 (407)
Q Consensus       304 ~--l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~l~~~gi~~  376 (407)
                      +  +...+    ..+..++..+++++++.+++..++..|    +-+.....+    +..+. ..-..+-+++|+ ++|.+
T Consensus       391 l~~i~G~d----gt~~g~~k~~~l~~ns~yfr~~l~~~g----fivyG~~dSpVvplll~~~~k~~~f~r~~l~-~nigv  461 (519)
T KOG1357|consen  391 VKHIMGED----GTNRGRQKIERLAENSRYFRWELQKMG----FIVYGNNDSPVVPLLLYGPAKIVAFSREMLE-RNIGV  461 (519)
T ss_pred             HHhhcCCC----cccHHHHHHHHHHhhhHHHHHhhhcCc----EEEecCCCCCcceeeecCcccccHHHHHHHh-cCceE
Confidence            2  22211    124466777889999999999999887    444433332    11111 223445556666 56655


Q ss_pred             cCCC-----------eEEecC-CCCCChhHHHHHHHHHH
Q 015435          377 TSDG-----------RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       377 ~~gg-----------Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      .-.|           |++.+. ++.|+++++++.+.++-
T Consensus       462 VvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g  500 (519)
T KOG1357|consen  462 VVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVG  500 (519)
T ss_pred             EEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhc
Confidence            4433           777654 57799999998887654

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.33  E-value=2.7e-10  Score=107.24  Aligned_cols=285  Identities=12%  Similarity=0.057  Sum_probs=166.1

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCC-----CCCceEEeecCCcccHHHHHHHHHHh
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAI-----KDNRVTTVQCLSGTGSLRVGAEFLAR  122 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~-----~~~~i~~~~t~g~t~a~~~~~~~~~~  122 (407)
                      +.+..++...+.... +. ....|...+...++.+.+.+++....+.+-     +...-++  |+|||+++..++...+.
T Consensus        50 ~~~~~i~~~~l~~~~-n~-n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~--t~Ggt~anl~al~aAR~  125 (373)
T PF00282_consen   50 PSPASILADLLASAL-NQ-NGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVF--TSGGTEANLYALLAARE  125 (373)
T ss_dssp             -CHHHHHHHHHHHHH-T--BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEE--ESSHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhhh-cc-cccccccccccccchHHHHHHHHHHhCCcccccccCCCceeE--eccchHHHHHHHHHHHH
Confidence            445566666666655 22 234454444566677777777744333321     1234667  99999999887533322


Q ss_pred             h------cCC-----C-eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---CCCcEEEEecCC
Q 015435          123 H------YHQ-----L-TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA---PSGAIVLLHACA  187 (407)
Q Consensus       123 ~------~~g-----d-~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~---~~~~~v~i~~~p  187 (407)
                      .      ..|     + .|++++-+|.+..+++..+|+.++.+|++ + ++.+|+++|++++.+.   ..++++++.+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~-~-~~~md~~~L~~~l~~~~~~g~~p~~vvat~G  203 (373)
T PF00282_consen  126 RALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTD-E-DGRMDIEALEKALEKDIANGKTPFAVVATAG  203 (373)
T ss_dssp             HHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BB-T-TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS
T ss_pred             HHhhhhhhcccccccccccccccccccHHHHhcceeeeEEEEecCC-c-chhhhHHHhhhhhcccccccccceeeeccCC
Confidence            1      012     2 46677778999999999999999999994 3 5789999999988643   234555555667


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH-cCCcEEEEEecCccccccCCCcceeE
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA-DGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      ...||.   .+++++|+++|+++++++.+|.+|.+...-..+...     +.. -..-.=+..+++|.++.| ..+|++ 
T Consensus       204 tt~~Ga---~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~-----~~~gi~~adSit~d~HK~l~~P-~~~~~~-  273 (373)
T PF00282_consen  204 TTNTGA---IDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRH-----LLFGIERADSITIDPHKWLGVP-YGCGVL-  273 (373)
T ss_dssp             -TTTSB---B-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGG-----GGTTGGGESEEEEETTTTTS-S-SS-EEE-
T ss_pred             Cccccc---ccCHHHHhhhccccceeeeecccccccccccccccc-----cccccccccccccchhhhhcCC-ccceeE-
Confidence            777888   689999999999999999999999883321111111     111 112234455789998854 678888 


Q ss_pred             EeecChhhHHHHH----HHHhhhh---------hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 015435          267 IVCKTEDVASRVE----SQLKLVI---------RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLF  333 (407)
Q Consensus       267 ~v~~~~~~~~~~~----~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (407)
                       +++++.......    ..+....         ...+...+. ...++..++.-   +..=.+.+.+..++..++.+++.
T Consensus       274 -l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l---~~~G~~G~~~~i~~~~~~a~~l~  348 (373)
T PF00282_consen  274 -LVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATL---KSLGREGYRERIRRCIELARYLA  348 (373)
T ss_dssp             -EESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -EeecccchHHHhccChhhhcccccccccccccccccccccc-cchHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHH
Confidence             688876433211    1111000         001112233 23333322210   00112456777788888999999


Q ss_pred             HHHHhcCCCCCcccc-cCCceeEE
Q 015435          334 DALSARGTPGDWSHI-IKQIGMFT  356 (407)
Q Consensus       334 ~~l~~~~~~~~~~~~-~~~~~~~~  356 (407)
                      +.+++.+.   ++.. .+..+...
T Consensus       349 ~~l~~~~~---~el~~~~~~~~vc  369 (373)
T PF00282_consen  349 DRLRKDPR---FELVNEPDLNIVC  369 (373)
T ss_dssp             HHHHTSTT---EEESSTTSSSEEE
T ss_pred             HHHHhCCC---EEEEcCCCceEEE
Confidence            99998874   6654 34444444

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.31  E-value=1.4e-09  Score=110.50  Aligned_cols=302  Identities=14%  Similarity=0.114  Sum_probs=167.7

Q ss_pred             cccCCC---CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhc-----C-CCeEEecCCCCCC
Q 015435           68 VKEYLP---IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY-----H-QLTIYIPQPTWGN  138 (407)
Q Consensus        68 ~~~y~~---~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~-----~-gd~Vi~~~p~y~~  138 (407)
                      .+.|.|   .+|..++...+.+++....+.    +.+.+ +-.+|+++..+.+...+...     + .++|+++.-.|..
T Consensus       529 ~hPyqp~e~sQG~lq~i~elq~~l~eLtGm----d~~Sl-~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgt  603 (954)
T PRK12566        529 LHPFAPREQAEGYRAMIDELEAWLCAITGF----DAICM-QPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGT  603 (954)
T ss_pred             CCCCCchhhhcCHHHHHHHHHHHHHHHHCC----CeEee-cCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEeccccccc
Confidence            367877   677555544444444222121    33444 34466666645432333321     2 3568888888866


Q ss_pred             hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeec
Q 015435          139 HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFD  217 (407)
Q Consensus       139 ~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D  217 (407)
                      ....+...|++++.++.+  .++.+|+++|++++++. ++..++++ .+|++-+  ++ .+++++|+++|+++|+++++|
T Consensus       604 Npasa~~~GieVv~Vp~D--~~G~iDle~L~a~I~~~~~~laaVmi-T~Pnt~G--v~-e~~V~eI~~iah~~Galv~vD  677 (954)
T PRK12566        604 NPASAQMAGMRVVIVECD--PDGNVDLDDLKAKAAAAGDRLSCLMI-TYPSTHG--VY-EEGIREICEVVHQHGGQVYMD  677 (954)
T ss_pred             CHHHHHHCCCEEEEeccC--CCCCcCHHHHHHHhhccCCCEEEEEE-EecCcCc--ee-cchHHHHHHHHHHcCCEEEEE
Confidence            667788899999999983  35689999999999733 33444455 4444333  33 568999999999999999999


Q ss_pred             cccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc----cCCCcceeEEeecChhhHHHHHHHHhhhh-------
Q 015435          218 SAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL----YGERVGALSIVCKTEDVASRVESQLKLVI-------  286 (407)
Q Consensus       218 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~v~~~~~~~~~~~~~~~~~~-------  286 (407)
                      .+... ......    .    +...+..++.++..|.|+.    .|.-+|.+  .+.     +.+...+...-       
T Consensus       678 gA~~~-a~~~l~----~----Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~i--av~-----~~L~pfLp~~P~~d~~G~  741 (954)
T PRK12566        678 GANLN-AQVGLA----R----PADIGADVSHMNLHKTFCIPHGGGGPGMGPI--GVR-----AHLAPFVANHPVVPVEGP  741 (954)
T ss_pred             eeChh-hccCCC----C----hhhcCCCEEEecCCcccCcCccCCCCccchh--hhh-----hhhhhhccCCCCcCCCCC
Confidence            99641 111110    0    1223457888999998852    23334554  122     32333222110       


Q ss_pred             --hcccC-CCChhH---HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeE-----
Q 015435          287 --RPMYS-SPPIHG---ASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMF-----  355 (407)
Q Consensus       287 --~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-----  355 (407)
                        +.... +.....   ..++..++....      ..+.+.......+..|+.+.|.+ +.+  ..+..+.+.+|     
T Consensus       742 ~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG------~eLk~aa~~ailnAnYla~rL~~-~~~--v~~~~~~~~~~hEfii  812 (954)
T PRK12566        742 DPNNGAVSAAPWGSASILPISWMYIAMMG------PQLADASEVAILSANYLANQLGG-AFP--VLYRGRNERVAHECIL  812 (954)
T ss_pred             CCCCCceeecccchHHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHhHh-hCC--CCcCCCCCCeeeEEEE
Confidence              00111 111111   222333333221      12444445556788899998876 322  22222212111     


Q ss_pred             EecC------CCHHHHHHhHhhccEEEc----CC--C-eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          356 TFTG------LNSEQVAFMTKEYHIYMT----SD--G-RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       356 ~~~~------~~~~~~~~~l~~~gi~~~----~g--g-Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+..      .+.+.+.+.|.++||...    |.  . ||+... .+++|+++++++++++.++
T Consensus       813 ~~~~l~~~~g~~~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e  876 (954)
T PRK12566        813 DLRPLKAQTGISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAE  876 (954)
T ss_pred             EccccccccCCCHHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence            1111      344445444446787542    22  2 887664 3679999999999988765

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.30  E-value=9.1e-10  Score=105.20  Aligned_cols=291  Identities=18%  Similarity=0.176  Sum_probs=171.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEe
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRY  155 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~  155 (407)
                      -+.+..+.+|+.+ +..      .-.++  ++|+|.++.++  +.+.+.+||.|+++.+++.+....+..+|+.++++.-
T Consensus        71 ~i~eAqe~aA~~f-gAd------~tyFv--vNGTS~ank~v--i~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p  139 (557)
T COG1982          71 PIKEAQELAARVF-GAD------HTYFV--VNGTSTANKAV--INAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEP  139 (557)
T ss_pred             cHHHHHHHHHHHh-CCC------ceEEE--ECCccHHHHHH--HHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecC
Confidence            3555566666655 652      34556  99999999999  5777999999999999999999999999999999765


Q ss_pred             e-cC-C--CCCcChhhHHHHHHcCCCC-cEEEEecCCCCCC--CCCCCHHHHHHHHHHHHHcCceeeecccccccc-CCC
Q 015435          156 Y-DP-A--TRGLNFQGLLEDLRAAPSG-AIVLLHACAHNPT--GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFA-SGS  227 (407)
Q Consensus       156 ~-~~-~--~~~~d~~~l~~~i~~~~~~-~~v~i~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~-~~~  227 (407)
                      . ++ -  -.+++.+.+.+.+.+.+.. +++++    .|||  |++++   +++|.+.++++++++.+|+++.... ..+
T Consensus       140 ~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vi----tnpTYdGv~~n---~~~i~~~~~~~~a~v~~deah~~~~~~~~  212 (557)
T COG1982         140 SRNPLYGIIGGIPLETFKEALLAHPDAEKLAVI----TNPTYDGVCYN---LRKIVELLHHYGAWVLYDEAHPAHFDFSP  212 (557)
T ss_pred             CCCccccccCCCCHHHHHHHHHhChhhheeEEE----ecCccceEeec---HHHHHHHHhhcCceEEhhhcCcccccccc
Confidence            3 22 1  1477999999988766655 66666    4777  99886   6777777999999999999864222 211


Q ss_pred             CCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecC--hhhHHHHHHHHhhhhhcccCCCChhHHHHHHHH-
Q 015435          228 LDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKT--EDVASRVESQLKLVIRPMYSSPPIHGASIVATI-  304 (407)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  304 (407)
                          ..+.  .......+++.-|..|.++  ++.-+..+ ...+  .-..+++-..+...+    +++|.....+.+.+ 
T Consensus       213 ----~l~~--~~~~~~~~~~tqS~HK~l~--alSQaS~i-Hv~~~~~~~~~r~nea~~~h~----STSPsY~l~ASlD~A  279 (557)
T COG1982         213 ----MLPE--SALNGGADFVTQSTHKLLA--ALSQASMI-HVKDGRAVNHERFNEALMMHQ----STSPSYPLMASLDVA  279 (557)
T ss_pred             ----cCcc--hhhhcCceEEEechhhhhh--hhhhhHHH-hhCCCccCCHHHHHHHHHHHc----cCCchHHHHHHHHHH
Confidence                1111  1223567889999999875  44443331 3443  111234444443332    23333333333222 


Q ss_pred             --hcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC-----ce----------eEE-----------
Q 015435          305 --LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ-----IG----------MFT-----------  356 (407)
Q Consensus       305 --l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~----------~~~-----------  356 (407)
                        +....-+..|++.+    +..-+.++.+++..+..+.   +....+.     .+          .+.           
T Consensus       280 r~~~~~~G~~l~~~~~----~~~i~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp  352 (557)
T COG1982         280 RMQEGNAGRELWQEVI----DEAIDFRKALRRLINEIGF---FPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTP  352 (557)
T ss_pred             HHhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHhcCC---eeeccccccCCcccccccccccccceeccccEEEEecC
Confidence              11222222332222    2333344444444444431   2221111     01          111           


Q ss_pred             ecCCCHHHHHHhHhhccEEEcCCC--eEEecC-CCCCChhHHHHHHHHHHH
Q 015435          357 FTGLNSEQVAFMTKEYHIYMTSDG--RISMAG-LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       357 ~~~~~~~~~~~~l~~~gi~~~~gg--Ris~~~-~~~e~i~~~~~~l~~~l~  404 (407)
                      -.|+++-.+...|+++||.....+  ++.+.- ....+....++.|.++++
T Consensus       353 ~~Gipg~~v~~~L~e~gii~e~~~d~~~lll~~~~~gk~~~lv~~L~~f~r  403 (557)
T COG1982         353 EFGIPGAIVAKYLREHGIIPEETGDYSNLLLFSPGIGKWQTLVDRLLEFKR  403 (557)
T ss_pred             CCCCcHHHHHHHHHHcCCeeeecCCceeeEEeeeccchHHHHHHHHHHHHH
Confidence            115567778888888898887776  433221 122556666666666655

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.26  E-value=9.4e-10  Score=113.63  Aligned_cols=277  Identities=14%  Similarity=0.101  Sum_probs=163.1

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCC--CeEEecCCCCCChHHHHh----hcCcee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ--LTIYIPQPTWGNHPKVFT----LAGLSV  150 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~g--d~Vi~~~p~y~~~~~~~~----~~G~~~  150 (407)
                      +.++++.++++. +.     +.+|+.+  +.++|.+.+++.. ...+.+|  |+|++++..|+.+...++    ..|+++
T Consensus       150 l~~~Qt~ia~Lt-G~-----~~anaSL--~d~aTAaaea~~~-a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV  220 (993)
T PLN02414        150 LLNYQTMITDLT-GL-----PMSNASL--LDEGTAAAEAMAM-CNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEV  220 (993)
T ss_pred             HHHHHHHHHHHh-CC-----ChhhEee--cCChHHHHHHHHH-HHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEE
Confidence            667788888887 53     3589999  9999999998852 2234444  789999999999877665    469999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++..+     .+      ...  .....+++ .. -|-+|.+.   ++++|+++|+++|+++++ .+. .+...... 
T Consensus       221 ~~v~~~~-----~~------~~~--~~v~~vlv-q~-P~~~G~v~---dv~~I~~~ah~~GaL~iV-aad-~lal~~l~-  279 (993)
T PLN02414        221 VVADEKD-----FD------YSS--GDVCGVLV-QY-PATDGEVL---DYAEFVKNAHANGVKVVM-ATD-LLALTMLK-  279 (993)
T ss_pred             EEecchh-----hc------ccc--CceEEEEE-ec-CCCCeEEc---CHHHHHHHHHHcCCEEEE-EEC-HHHhcCCC-
Confidence            9887721     11      001  12333333 22 23489964   688999999999999999 332 12222110 


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccc---cccCCCcceeEEeecChhhHHHHHHHHhh-hh--------------------
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNM---GLYGERVGALSIVCKTEDVASRVESQLKL-VI--------------------  286 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~---~~~G~r~G~~~~v~~~~~~~~~~~~~~~~-~~--------------------  286 (407)
                         ++    ......+++++..|..   |..|-+.|++  .+. ++    +...+.. ..                    
T Consensus       280 ---~p----ge~GADi~vgsgqKwg~P~G~GGP~aGfl--avr-~~----~~r~~PgriVG~s~d~~g~~~~~l~LqtRe  345 (993)
T PLN02414        280 ---PP----GEWGADIVVGSAQRFGVPMGYGGPHAAFL--ATS-QE----YKRLMPGRIIGVSVDSSGKPALRMAMQTRE  345 (993)
T ss_pred             ---CH----hhccCcEEEECCCccccCCCCCCCCeeEE--EEC-HH----HHhhCCCcccCcccCCCCCccccccccccc
Confidence               11    2223456778877765   2245567888  455 22    2222210 00                    


Q ss_pred             ---hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-CCceeEEecCCCH
Q 015435          287 ---RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII-KQIGMFTFTGLNS  362 (407)
Q Consensus       287 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~  362 (407)
                         +....+++..+..++.+.+...-+...-...+++.++++.++..++.+.|...|    +++.. +..+.+.+.--+.
T Consensus       346 qhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G----~~~~~~~~f~~vt~~~~~~  421 (993)
T PLN02414        346 QHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLG----FQVQSLPFFDTVKVKCSDA  421 (993)
T ss_pred             chhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcC----CccCCCCCcCeEEEecCCH
Confidence               001113333223333322221100000013467778889999999999998877    33322 2233343321144


Q ss_pred             HHHHHhHhhccEEEcCC--C--eEEecC-CCCCChhHHHHHHHH
Q 015435          363 EQVAFMTKEYHIYMTSD--G--RISMAG-LSSKTVPHLTDAIHA  401 (407)
Q Consensus       363 ~~~~~~l~~~gi~~~~g--g--Ris~~~-~~~e~i~~~~~~l~~  401 (407)
                      +.+.+.|.++||.+...  +  |+|+.. .+++||+++++.|..
T Consensus       422 ~~v~~~L~~~gI~l~~~~~~~lrvs~~e~~T~edId~L~~~l~~  465 (993)
T PLN02414        422 DAIADAAAKVGINLRVVDANTVTVSFDETTTLEDVDKLFKVFAG  465 (993)
T ss_pred             HHHHHHHHHCCCeeEEecCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence            55666667789977643  2  888765 467999999999863

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.23  E-value=1.2e-09  Score=101.27  Aligned_cols=320  Identities=15%  Similarity=0.094  Sum_probs=179.8

Q ss_pred             eeeeeeeeeecCCCccccchhHHHHHHHHhccccc-------cccCCCCC--CcHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           33 KLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR-------VKEYLPIV--GLVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        33 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~y~~~~--g~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      -++|+.|=     . ..|+++.+++.+++. +-..       ..++++..  -+.+..+.+.+++ +..    +..+|++
T Consensus         5 ~~nF~aGP-----a-~lp~~Vl~~~~~~~~-~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll-~~P----~~y~Vlf   72 (364)
T PRK12462          5 QLNFSGGP-----G-ALPDTVLEQVRQAVV-ELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLL-GIP----DEYGVVF   72 (364)
T ss_pred             cceecCCC-----c-CCCHHHHHHHHHHHh-cccccCccccccccccHHHHHHHHHHHHHHHHHh-CCC----CCCeEEE
Confidence            45777552     1 458888888888876 2111       22333311  2445555566655 431    1135655


Q ss_pred             eecCCcccHHHHHHHHHHhhcCCCeEE-ecCCCCCC--hHHHHhhcCceeeEEEeec--CCCCCcChhhHHHHHHcCCCC
Q 015435          104 VQCLSGTGSLRVGAEFLARHYHQLTIY-IPQPTWGN--HPKVFTLAGLSVKTYRYYD--PATRGLNFQGLLEDLRAAPSG  178 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi-~~~p~y~~--~~~~~~~~G~~~~~v~~~~--~~~~~~d~~~l~~~i~~~~~~  178 (407)
                      + ..|||++++++  .+..+.+||+++ +...++.+  +.+.++.+| ++..+....  +.+..++++++    ...++.
T Consensus        73 l-~GggT~~~ea~--~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~----~~~~d~  144 (364)
T PRK12462         73 L-QGGSSLQFSMI--PMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL----DWDARA  144 (364)
T ss_pred             E-eccHHHHHHHH--HHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh----ccCCCC
Confidence            2 66689999998  466678999665 45444432  244555666 554443211  11233445544    212344


Q ss_pred             cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc
Q 015435          179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY  258 (407)
Q Consensus       179 ~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  258 (407)
                      ..+.+ ++..+.||+.++        ++.+.++.++|+|.+-. +...+.     .+..      ..++..|.-|.+|.+
T Consensus       145 ~~v~~-t~NETstGv~~~--------~~~~~~~~llvvD~sS~-~~s~pi-----d~~~------~dvi~agsQKnlgP~  203 (364)
T PRK12462        145 PFRHY-VSNETVEGLQFP--------DAAGLPDSPLIADMSSD-FMSRPF-----DVEA------YGMVYAHAQKNLGPA  203 (364)
T ss_pred             cEEEE-ccCCCCceEecC--------cccccCCCeEEEEcCch-hhCCCC-----ChHH------ccEEEeeccccCCCC
Confidence            55555 555667798775        23344689999999743 433322     2222      256667779999977


Q ss_pred             CCCcceeEEeecChhhHHHHHHHHhhh-------h-hcccCCCChhHHHHHHHHhcChhhHHhHHH--HHHHHHHHHHHH
Q 015435          259 GERVGALSIVCKTEDVASRVESQLKLV-------I-RPMYSSPPIHGASIVATILKDSTMYKEWTL--ELKAMADRIISM  328 (407)
Q Consensus       259 G~r~G~~~~v~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~  328 (407)
                      |+  +.+  +. +++..++.......+       . ...+.+|+....+++..+++-..     ++  .++.+.++.+++
T Consensus       204 Gl--tvv--iv-s~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~-----~e~GGl~~~~~r~~~k  273 (364)
T PRK12462        204 GV--TVA--II-RRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIR-----DEIGGVHAMRDINARK  273 (364)
T ss_pred             ce--EEE--EE-CHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHH-----HhccCHHHHHHHHHHH
Confidence            74  433  33 344333322111111       1 12333667777777776655221     13  578888999999


Q ss_pred             HHHHHHHHHhcCCCCCccc-cc--CCceeEEecCC-CHH---HHHHhHhhccEEEcCC-----C-eEEecC-CCCCChhH
Q 015435          329 RQQLFDALSARGTPGDWSH-II--KQIGMFTFTGL-NSE---QVAFMTKEYHIYMTSD-----G-RISMAG-LSSKTVPH  394 (407)
Q Consensus       329 ~~~l~~~l~~~~~~~~~~~-~~--~~~~~~~~~~~-~~~---~~~~~l~~~gi~~~~g-----g-Ris~~~-~~~e~i~~  394 (407)
                      ++++++.+.+...-  +.. ..  .++-+-+...+ +.+   ...+.++++|+....|     | |+|+.. ++.|+++.
T Consensus       274 a~~ly~~id~~~~~--~~~~~~~~~RS~mnv~f~~~~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~  351 (364)
T PRK12462        274 AAMLYATLDALNEV--IDCHAHRAARSTMNVAFRFRQPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSR  351 (364)
T ss_pred             HHHHHHHHHhCCCc--ccCCCChhhcCcceEEEEcCCHHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHH
Confidence            99999999987521  111 11  12222222222 221   2334446689988776     3 999765 68899999


Q ss_pred             HHHHHHHHHHh
Q 015435          395 LTDAIHAAVTR  405 (407)
Q Consensus       395 ~~~~l~~~l~~  405 (407)
                      +++-++++-++
T Consensus       352 L~~fm~~f~~~  362 (364)
T PRK12462        352 LCAFLKDFAIR  362 (364)
T ss_pred             HHHHHHHHHHh
Confidence            99998887654

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=99.22  E-value=5.7e-10  Score=96.59  Aligned_cols=341  Identities=13%  Similarity=0.113  Sum_probs=198.3

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ..+++.++|+-...-  .-| ...++++++...++.. -....++    -..++.+....+......    -+-++|  +
T Consensus        43 DE~g~~yLDCInNVa--Hvg-hchp~VV~A~~kQmat-~~tN~RF----lhd~lv~cA~~l~stlPe----Lsvc~F--~  108 (452)
T KOG1403|consen   43 DEEGTRYLDCINNVA--HVG-HCHPEVVRAGAKQMAT-ISTNNRF----LHDELVQCARTLTSTLPE----LSVCFF--V  108 (452)
T ss_pred             ccCcccHHHHhhhhh--hcc-cCCHHHHHHHHHHHhH-hcccchh----hHHHHHHHHHHHhhcCCC----ceEEEE--e
Confidence            556788998876653  234 6678899999888861 1112223    234455554444422222    156788  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhh-------cCc---eeeEE---EeecCCC-------------
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTL-------AGL---SVKTY---RYYDPAT-------------  160 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~-------~G~---~~~~v---~~~~~~~-------------  160 (407)
                      +||++|+.+++++.+.+.+-..||+.+-.|.++......       .|.   ++.+|   |+.|-..             
T Consensus       109 NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~  188 (452)
T KOG1403|consen  109 NSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADM  188 (452)
T ss_pred             cCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccc
Confidence            999999999988888777666788888888777553321       111   11111   2211000             


Q ss_pred             CCcChhhHHHHHHc---CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHH
Q 015435          161 RGLNFQGLLEDLRA---APSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR  236 (407)
Q Consensus       161 ~~~d~~~l~~~i~~---~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~  236 (407)
                      +..=.+++++.+..   .....+.++--+-+.=.|.+ .+....+++++..+.+|-+.|.||+.-+|+..+.  ..|++.
T Consensus       189 ~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~--hyWafq  266 (452)
T KOG1403|consen  189 GALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGS--HYWAFQ  266 (452)
T ss_pred             hhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccch--hhhhhh
Confidence            00112334443321   12222333323333334665 4456789999999999999999999999988653  455554


Q ss_pred             HHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435          237 MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTL  316 (407)
Q Consensus       237 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  316 (407)
                      .+. .-..   +-++.|-+| .|.+++.+  ++. +++.+.+..--  ..-..+++.++.++.+..++|+-.+       
T Consensus       267 ~y~-fiPD---IVtmgKpmG-NGhPVa~V--att-keIA~Af~atg--v~YFNTyGGnPVsCAv~laVm~v~e-------  329 (452)
T KOG1403|consen  267 TYN-FIPD---IVTMGKPMG-NGHPVAAV--ATT-KEIAQAFHATG--VEYFNTYGGNPVSCAVGLAVMRVCE-------  329 (452)
T ss_pred             hhc-cccc---hheecccCC-CCCeeeEE--ecc-HHHHHHhcccc--ceehhccCCCchhHHHHHHHHHHHh-------
Confidence            432 1122   234789998 89999998  344 55444433200  1111234677888888887776332       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC--CceeEEecCC---------CHH---H-HHHhHhhccEEEcCCC-
Q 015435          317 ELKAMADRIISMRQQLFDALSARGTPGDWSHIIK--QIGMFTFTGL---------NSE---Q-VAFMTKEYHIYMTSDG-  380 (407)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~---~-~~~~l~~~gi~~~~gg-  380 (407)
                       -+++.++..+.-++|...|+.+..+  .+.+..  ..|+|.=+++         +.+   . +.++-+.++|.++..| 
T Consensus       330 -~E~Lq~ha~~vG~~L~~lL~~~k~k--h~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGP  406 (452)
T KOG1403|consen  330 -DENLQEHAQQVGEKLEVLLRRLKQK--HECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGP  406 (452)
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHHhhh--ccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCC
Confidence             2344455666667777777665421  333332  3455554433         112   1 3456666889998877 


Q ss_pred             -----eE--EecCCCCCChhHHHHHHHHHHH
Q 015435          381 -----RI--SMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       381 -----Ri--s~~~~~~e~i~~~~~~l~~~l~  404 (407)
                           .|  -++ .++++.+..+..|.++|.
T Consensus       407 h~NilKiKPPmC-Fneena~e~v~~ld~iLT  436 (452)
T KOG1403|consen  407 HRNILKIKPPMC-FNEENADEFVLGLDEILT  436 (452)
T ss_pred             CCceeecCCCcc-cChhhHHHHHHHHHHHHH
Confidence                 22  233 367888888888888774

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.18  E-value=8.3e-09  Score=107.14  Aligned_cols=277  Identities=14%  Similarity=0.119  Sum_probs=165.2

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC--CCeEEecCCCCCChHHHH----hhcCcee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH--QLTIYIPQPTWGNHPKVF----TLAGLSV  150 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~--gd~Vi~~~p~y~~~~~~~----~~~G~~~  150 (407)
                      +.++++.++++. +.     +..|+.+  +.++|.+.+.+.... .+.+  +++|++++..|+.....+    +..|+++
T Consensus       123 l~~~Qt~la~Lt-G~-----~~anaSl--~d~aTAa~ea~~~a~-~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev  193 (954)
T PRK05367        123 LLNFQTMVADLT-GL-----EIANASL--LDEATAAAEAMALAK-RVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEV  193 (954)
T ss_pred             HHHHHHHHHHHH-CC-----Chhhccc--cccHHHHHHHHHHhh-hhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEE
Confidence            556677888877 53     3478999  999999999875222 2445  489999999999887765    4679999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++.. .     |.+      .  .....+++ .+| |-+|.+.   ++++|+++|+++|+++++|.....+....   
T Consensus       194 ~~~~~~-~-----d~~------~--~~~~~vlv-q~p-~~~G~i~---d~~~i~~~ah~~Gal~~vda~~~Al~~l~---  251 (954)
T PRK05367        194 VVGDAA-K-----ALD------H--DDVFGVLL-QYP-GTSGEVR---DYTALIAAAHARGALVAVAADLLALTLLT---  251 (954)
T ss_pred             EEecCc-c-----CCC------c--ccEEEEEE-ecC-CCCeeec---cHHHHHHHHHHcCCEEEEEehhhhccCCC---
Confidence            999873 1     111      1  23444444 343 6789865   69999999999999999987543333221   


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCcc-----ccccCCCcceeEEeecChhhHHHHHHHHhh------h--------------
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKN-----MGLYGERVGALSIVCKTEDVASRVESQLKL------V--------------  285 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~-----~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~------~--------------  285 (407)
                         +    +..-...++++|..|.     +|.|  ..|++  .+. +++.+.+-.++-.      .              
T Consensus       252 ---~----pge~GaDi~vgs~qkfg~P~g~GGP--~aGfl--avr-~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqh  319 (954)
T PRK05367        252 ---P----PGEMGADIAVGSAQRFGVPMGFGGP--HAAYF--AVR-DAYKRSMPGRIVGVSVDAAGNPALRLALQTREQH  319 (954)
T ss_pred             ---C----hhhcCCCEEEeeCcccCCCCCCCCC--CEEEE--EEC-HHHHhhCCCCeeeeecccCCCccccccccccccc
Confidence               1    1223446777777786     4444  47888  455 2322222111100      0              


Q ss_pred             hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-CCceeEEec-CCCHH
Q 015435          286 IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII-KQIGMFTFT-GLNSE  363 (407)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~  363 (407)
                      ++....+++.....++...+...-+...-...+++..++...+..++.+.|...|    +++.. +..+.+.+. +.+.+
T Consensus       320 iRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G----~~~~~~~~f~~~~~~~~~~~~  395 (954)
T PRK05367        320 IRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALG----LEVVHDSFFDTLTVEVGGDAA  395 (954)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC----cccCCCCCCCeEEEeCCCCHH
Confidence            0111112222222222222211000000014577888999999999999998776    33321 112223222 33566


Q ss_pred             HHHHhHhhccEEEcCC--C--eEEecC-CCCCChhHHHHHHH
Q 015435          364 QVAFMTKEYHIYMTSD--G--RISMAG-LSSKTVPHLTDAIH  400 (407)
Q Consensus       364 ~~~~~l~~~gi~~~~g--g--Ris~~~-~~~e~i~~~~~~l~  400 (407)
                      .+.+.|.++||.+...  +  |||+.. .+++||+++++.+.
T Consensus       396 ~i~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        396 AVLARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             HHHHHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence            6666667789988543  2  888765 36789999999986

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.10  E-value=4.3e-08  Score=87.28  Aligned_cols=310  Identities=13%  Similarity=0.120  Sum_probs=188.4

Q ss_pred             cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh---cCCCeEEec-CCCCCChHHHH
Q 015435           68 VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH---YHQLTIYIP-QPTWGNHPKVF  143 (407)
Q Consensus        68 ~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~---~~gd~Vi~~-~p~y~~~~~~~  143 (407)
                      ...|..+.+...|+.++.+.+ +-       +.++.  |+-|.+|-.+++.++...   .+|....++ +..|.......
T Consensus        72 DEAYagsrs~~~L~~avkdif-Gf-------q~~iP--thQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~  141 (471)
T COG3033          72 DEAYAGSRSYYALADAVKDIF-GF-------QYTIP--THQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHI  141 (471)
T ss_pred             chhhcccccHHHHHHHHHHhc-Cc-------eeeee--ccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHH
Confidence            345888889999999999987 63       66777  999999988876555221   144433344 45566677788


Q ss_pred             hhcCceeeEEEeecCC--------CCCcChhhHHHHHHcC--CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCce
Q 015435          144 TLAGLSVKTYRYYDPA--------TRGLNFQGLLEDLRAA--PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLL  213 (407)
Q Consensus       144 ~~~G~~~~~v~~~~~~--------~~~~d~~~l~~~i~~~--~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~  213 (407)
                      +..|..++.++.+...        .+.+|++.|++.|.+.  .+.+.|+++.+.|.-.|.-.|.+.+++..++|++|++.
T Consensus       142 ~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ip  221 (471)
T COG3033         142 QINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIP  221 (471)
T ss_pred             HhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCc
Confidence            8899988888764211        2457999999999864  34577777667677789999999999999999999999


Q ss_pred             eeecccc-ccccC----CCCCchhHHHHHHHH----cCCcEEEEEecCccccccCCCcceeEEeecChh---hHHHHHHH
Q 015435          214 PFFDSAY-QGFAS----GSLDADAQSVRMFVA----DGGECLVAQSYAKNMGLYGERVGALSIVCKTED---VASRVESQ  281 (407)
Q Consensus       214 li~D~~y-~~~~~----~~~~~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~---~~~~~~~~  281 (407)
                      ++.|.+- .+-.+    .+..-..|++..+..    ..|.  +.-|..|- ++.-+. |++  ...|+.   +...+...
T Consensus       222 vv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~--~~mS~KKD-~lvnmG-Gfl--~~~D~~~fDvy~~~~~~  295 (471)
T COG3033         222 VVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADG--CTMSAKKD-GLVNMG-GFL--CFKDDSFFDVYEECRTL  295 (471)
T ss_pred             EEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhh--heeecccc-ceeccc-cEE--EecCccHHHHHHHHHhh
Confidence            9999983 33222    111223456555432    1222  22344443 322221 455  455553   33332221


Q ss_pred             Hhhh-hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC
Q 015435          282 LKLV-IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL  360 (407)
Q Consensus       282 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  360 (407)
                      .-.. ..+.+.+...-.+.+.+.-|.+.- .   .+++...    -++.+||.+.|.+.|    +.+..|.||=-+|++.
T Consensus       296 ~V~~eG~~tYGgl~GrdmealAvGL~e~~-~---~~yl~~R----v~Qv~YL~~~l~~~G----Vpi~~paGGHavfvda  363 (471)
T COG3033         296 VVVQEGFPTYGGLAGRDMEALAVGLREGV-N---FDYLAHR----VAQVQYLADGLEEAG----VPIVQPAGGHAVFVDA  363 (471)
T ss_pred             eEeeccccccCcccchhHHHHHHHHHHhc-C---cHHHHHH----HHHHHHHHHHHHhcC----CeeEecCCCceEEeeh
Confidence            1100 011112333333444443343321 0   0223322    235689999999999    6677787776666632


Q ss_pred             ------------CHHH-HHHhHhhccEEEcCCC---------------------eEEecC--CCCCChhHHHHHHHHHHH
Q 015435          361 ------------NSEQ-VAFMTKEYHIYMTSDG---------------------RISMAG--LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       361 ------------~~~~-~~~~l~~~gi~~~~gg---------------------Ris~~~--~~~e~i~~~~~~l~~~l~  404 (407)
                                  .++. +.++-.+.||....-|                     |+++..  .+.+-++..++.++.+.+
T Consensus       364 ~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e  443 (471)
T COG3033         364 GKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKE  443 (471)
T ss_pred             hhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHh
Confidence                        2333 4456677888765422                     777654  355778888888888765


Q ss_pred             h
Q 015435          405 R  405 (407)
Q Consensus       405 ~  405 (407)
                      +
T Consensus       444 ~  444 (471)
T COG3033         444 N  444 (471)
T ss_pred             c
Confidence            3

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.10  E-value=7.1e-08  Score=84.91  Aligned_cols=343  Identities=15%  Similarity=0.125  Sum_probs=199.0

Q ss_pred             CCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc---ccccCC-CCCC----cHHHHHHHH
Q 015435           14 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS---RVKEYL-PIVG----LVDFNKLSA   85 (407)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~y~-~~~g----~~~l~~~~a   85 (407)
                      -.+++.+.+..+..+  ..+|-|..+.    .| ..|.....+.++... +..   ....+. ....    -..+-.+++
T Consensus        15 a~dpl~~lr~~f~lp--~~viyLdgnS----LG-a~p~~~~a~~~q~a~-deW~~~lirsw~~a~~~W~~lp~~lgdklA   86 (407)
T COG3844          15 AADPLAKLRDRFALP--GGVIYLDGNS----LG-ARPRAVTARLQQVAT-DEWGEGLIRSWNKAKADWFDLPERLGDKLA   86 (407)
T ss_pred             ccCchhhhHhhccCC--CCeEEeeccc----cc-cCchHHHHHHHHHHH-HHHHhhhhhhhcccCCchhhchhHHHHHhh
Confidence            345566666655433  4666666554    35 556566665555443 110   111111 0111    123344455


Q ss_pred             HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh--cCCCeEEecCC-CCCChHH----HHhhcCceeeEEEeecC
Q 015435           86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH--YHQLTIYIPQP-TWGNHPK----VFTLAGLSVKTYRYYDP  158 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~--~~gd~Vi~~~p-~y~~~~~----~~~~~G~~~~~v~~~~~  158 (407)
                      -++ +.     .+.++++  +.+++--+.-+  +...+  .+|++||+++- +|+.-..    .+...|..   +++   
T Consensus        87 pLi-GA-----~~~Evvv--~dtts~nl~k~--L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~~---  150 (407)
T COG3844          87 PLI-GA-----RAGEVVV--TDTTSINLFKV--LAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YDL---  150 (407)
T ss_pred             hhh-cC-----CCCceEE--eCCcchHHHHH--HHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---ccc---
Confidence            555 32     2578888  87777666655  33334  46999999984 3433222    33333322   222   


Q ss_pred             CCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH
Q 015435          159 ATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF  238 (407)
Q Consensus       159 ~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~  238 (407)
                       ...+.++++++.+.  ....++++ ++.+.-||..+   ++.+|-.+++++|++++.|-+++..... .  +       
T Consensus       151 -~~~~~P~~~~~~~~--dd~AvV~L-~~V~y~TGql~---dm~aiT~~AH~~galv~wDLAHsaGavp-~--~-------  213 (407)
T COG3844         151 -EGVIAPRALEEAIT--DDVAVVLL-SHVNYKTGQLL---DMRAITALAHQHGALVGWDLAHSAGAVP-V--D-------  213 (407)
T ss_pred             -eeeeChHHHHHhhc--cceEEEEe-cccccccccee---eHHHHHHHHHhcCceEEeehhcccCCcc-e--e-------
Confidence             13457778999887  55666666 88899999977   5888888899999999999998755432 1  1       


Q ss_pred             HHcCCcEEEEEecCcccc-ccCCCcceeEEeecChhhHHHHHHH-------------------HhhhhhcccCCCChhHH
Q 015435          239 VADGGECLVAQSYAKNMG-LYGERVGALSIVCKTEDVASRVESQ-------------------LKLVIRPMYSSPPIHGA  298 (407)
Q Consensus       239 ~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~v~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~  298 (407)
                      ....+..+-+++-.|.++ .||-. +++. +.+  +..++....                   .....+..+.+++.+++
T Consensus       214 Lh~~gaDfaigcsyKYLNgGPGap-a~l~-v~~--~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~  289 (407)
T COG3844         214 LHAAGADFAIGCSYKYLNGGPGAP-AGLF-VAP--RHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSL  289 (407)
T ss_pred             ecccCCCeeeeeeceeccCCCCCc-eeEE-ecc--ccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhh
Confidence            122344566777788875 24433 2331 222  111222111                   12223334445566666


Q ss_pred             HHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC-----CceeEEecCCCHHHHHHhHhhcc
Q 015435          299 SIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK-----QIGMFTFTGLNSEQVAFMTKEYH  373 (407)
Q Consensus       299 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~g  373 (407)
                      .++...|+--.   .  -.+.++|++-....+++.+.++....-..+....|     .|+-..+.--....+.+.|.++|
T Consensus       290 aal~~aLDifa---~--~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~~~~V~qaLi~rG  364 (407)
T COG3844         290 AALEGALDIFA---D--VDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPHGYQVMQALIDRG  364 (407)
T ss_pred             HHHhhhhhhhh---h--cCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCcHHHHHHHHHHcC
Confidence            66655554221   1  12678889888999999999987532112444444     34444444336677887778899


Q ss_pred             EEEcC--CC--eEEecC--CCCCChhHHHHHHHHHHHhh
Q 015435          374 IYMTS--DG--RISMAG--LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       374 i~~~~--gg--Ris~~~--~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |...-  -+  |+.+..  ++..|+=.+++.|.++++.+
T Consensus       365 VigD~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~  403 (407)
T COG3844         365 VIGDFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL  403 (407)
T ss_pred             ccccccCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence            97632  22  887764  47799999999999998753

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=99.01  E-value=7.8e-08  Score=88.65  Aligned_cols=303  Identities=10%  Similarity=0.079  Sum_probs=177.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhc---CC---CeEEecCCCCCChHHHHhhcCce
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY---HQ---LTIYIPQPTWGNHPKVFTLAGLS  149 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~---~g---d~Vi~~~p~y~~~~~~~~~~G~~  149 (407)
                      +..++..+..+.+.+..+.+ ++.-=..  |.|+|+++.++-+-.....   .|   ..+++++..+..+....+.++++
T Consensus       117 ~~~~~e~~~Vnm~~~L~~~~-~~~~g~~--t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~  193 (491)
T KOG1383|consen  117 VVRKLEAECVNMIANLFNAP-SDSCGCG--TVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVE  193 (491)
T ss_pred             hhHHHHHHHHHHHHHHhcCC-ccccCcc--ccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEE
Confidence            34444444444443333322 1223334  8899999665533322221   12   34677777788888888899999


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHH-cCceeeeccccccccCCCC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS-KGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~-~~~~li~D~~y~~~~~~~~  228 (407)
                      +..||++ +..+.+|+.++.+.++  +++.+++. .-|+.|+|.   .+++++|.++..+ +++.+-+|.+-.+|...  
T Consensus       194 l~~V~~~-~~~~~~D~~k~~~~i~--eNti~lv~-~~~~~p~G~---~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p--  264 (491)
T KOG1383|consen  194 LREVPLD-EGDYRVDPGKVVRMID--ENTIMLVG-SLPNFPTGE---IEDVEKLADLLLEIWDIPIHVDACLGGFINP--  264 (491)
T ss_pred             EEeeecc-ccceEecHHHHHHHhc--cceEEEEE-EcCCCCccc---hhhHHHHHHHHHHHhCCceeecccCcccccc--
Confidence            9999994 6779999999999998  66777666 789999999   7899999999998 99999999998888752  


Q ss_pred             CchhHHHHHHHHcCCcEE-EEE-ecCccccccCCCcceeEEeecChhhHHH-HH---HHHhhhhhcccCCCChh-----H
Q 015435          229 DADAQSVRMFVADGGECL-VAQ-SYAKNMGLYGERVGALSIVCKTEDVASR-VE---SQLKLVIRPMYSSPPIH-----G  297 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i-~~~-s~sK~~~~~G~r~G~~~~v~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~-----~  297 (407)
                       ........+ +.....+ .+. +-+| ||+.--.+||+  +-.++++... +.   +.+.......+.+.+..     +
T Consensus       265 -~~~~~~~~f-dFr~p~V~Sisa~~HK-YGl~~~G~~~v--l~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~  339 (491)
T KOG1383|consen  265 -AGYLNEEEF-DFRVPGVTSISADGHK-YGLAPAGSSWV--LYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAA  339 (491)
T ss_pred             -ccccCcccc-ccCCCCceeEeeccce-eeeeecCcEEE--EEcccccccceEEEeccccCccccCcccccCCcccHHHH
Confidence             000111111 1112222 222 2233 55544457888  4565543221 11   11111111222233333     3


Q ss_pred             HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cCCceeEEec--CCCHHHHHHhHhhccE
Q 015435          298 ASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI-IKQIGMFTFT--GLNSEQVAFMTKEYHI  374 (407)
Q Consensus       298 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~l~~~gi  374 (407)
                      |.++.  +..+.      +...+.-+.+.+....|.+.+++.+.   +... .|..++..|-  .++.=.+..+|.++|.
T Consensus       340 ~wa~~--~~lG~------eGY~~~~~~ive~~~~l~egie~i~~---i~i~gkp~vs~~~~~s~~~~i~elsd~l~~~GW  408 (491)
T KOG1383|consen  340 QWAAL--MSLGE------EGYRENTQNIVETARKLREGIENIKG---IKIVGKPLVSFILFGSNDVNIFELSDLLRKKGW  408 (491)
T ss_pred             HHHHH--HHhhH------HHHHHHHHHHHHHHHHHHHhhhcccc---ceecCCCcEEEEEccCCccchhhhhHHHHhcCc
Confidence            33333  22221      33445556677888889999988753   4433 4555544443  2233335677777887


Q ss_pred             EEcC----CC-eEEecC--CCCCChhHHHHHHHHHHHhh
Q 015435          375 YMTS----DG-RISMAG--LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       375 ~~~~----gg-Ris~~~--~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+..    .+ .|++..  ..++-.++++.-|+++++++
T Consensus       409 ~lnalq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el  447 (491)
T KOG1383|consen  409 ILNALQFPAAIHICVTRVHAREDVADRFVADIRKVVEEL  447 (491)
T ss_pred             CccccCCCCceEEEEEeeeccHHHHHHHHHHHHHHHHHH
Confidence            7643    23 565543  22333578888888877654

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.00  E-value=4.2e-08  Score=85.25  Aligned_cols=166  Identities=16%  Similarity=0.253  Sum_probs=115.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecC-CCCCChHHHH----------h
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQ-PTWGNHPKVF----------T  144 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~-p~y~~~~~~~----------~  144 (407)
                      |-+.|.+--|+.+ +..      ..++-.+.-+||+|+..+  +...+.|||+.+... .-|....+++          +
T Consensus        66 GRdtLe~vyA~vf-~aE------~a~VRpq~isGTHAI~~a--Lfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~  136 (416)
T COG4100          66 GRDTLERVYAQVF-GAE------AALVRPQIISGTHAIACA--LFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLK  136 (416)
T ss_pred             chhHHHHHHHHHh-ccc------cceeeeeeecchhHHHHH--HHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHH
Confidence            4445555555544 432      222224566799999998  577899999987654 3455454443          4


Q ss_pred             hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc--Cceeeecccccc
Q 015435          145 LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK--GLLPFFDSAYQG  222 (407)
Q Consensus       145 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~li~D~~y~~  222 (407)
                      .+|++.+.+|++  ..+.+|.+.+.+.+.  ++++++.|.-+....---.++.+++++++++.++-  ++++++|.+|.+
T Consensus       137 dfgi~Y~~v~Lt--~~gkiD~~~v~~~i~--~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGE  212 (416)
T COG4100         137 DFGIKYKAVPLT--ADGKIDIQAVKTAIS--DRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGE  212 (416)
T ss_pred             HhCcceeecccc--cCCcccHHHHHHhcC--ccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchh
Confidence            567888889884  347899999999998  78999999655444444458899999999999985  699999999999


Q ss_pred             ccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC-Cc-cee
Q 015435          223 FASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE-RV-GAL  265 (407)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~-G~~  265 (407)
                      |+..-   ++.       +-...+..+|+-|+-| .|+ .. ||+
T Consensus       213 FvE~~---EPt-------~vGaDliAGSLIKNpG-GgiaktGGYi  246 (416)
T COG4100         213 FVEEK---EPT-------HVGADLIAGSLIKNPG-GGIAKTGGYI  246 (416)
T ss_pred             hhhcc---Ccc-------ccchhhhccceeeCCC-Cceeecccee
Confidence            99642   111       1234577899999876 343 33 555

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.98  E-value=3.6e-07  Score=83.67  Aligned_cols=141  Identities=16%  Similarity=0.232  Sum_probs=104.6

Q ss_pred             ccccCCC---CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhc--CC----CeEEecCCCCC
Q 015435           67 RVKEYLP---IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY--HQ----LTIYIPQPTWG  137 (407)
Q Consensus        67 ~~~~y~~---~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~--~g----d~Vi~~~p~y~  137 (407)
                      ..|.|.|   .+|+.++...+.+|+...-+.    +.|.+ |-+.|.++=..-+.+.+...  .|    +.+++|+..+.
T Consensus        94 ~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~----DavsL-QP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHG  168 (496)
T COG1003          94 NIHPFQPEEQVQGYLELIYELQEWLKEITGM----DAVSL-QPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHG  168 (496)
T ss_pred             hcCCCCChHHHHHHHHHHHHHHHHHHHhcCC----ceeec-cCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccC
Confidence            4566766   557888888888888444332    44444 55666665554432333332  33    56999999999


Q ss_pred             ChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeec
Q 015435          138 NHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFD  217 (407)
Q Consensus       138 ~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D  217 (407)
                      .....+..+|.+|+.|++  .+++.+|+++|++++.  .+..+++| .+|+ --|+.  .+++.+|+++.+++|..|..|
T Consensus       169 TNPASAam~G~~VV~V~~--~~~G~VDlddLk~k~~--~~~AalMi-TnPs-T~GvF--E~~I~ei~~ivH~~Gg~vY~D  240 (496)
T COG1003         169 TNPASAAMAGFKVVVVKC--DENGNVDLDDLRAKAE--DNLAALMI-TNPS-TLGVF--EEDIREICEIVHEAGGQVYYD  240 (496)
T ss_pred             CChhhHhhcCceEEEEec--CCCCCccHHHHHHHhc--cceeEEEe-ccCc-ccccc--hhhHHHHHHHHHHcCCEEEec
Confidence            999999999999999999  4457899999999998  67888888 4444 12443  789999999999999999999


Q ss_pred             ccc
Q 015435          218 SAY  220 (407)
Q Consensus       218 ~~y  220 (407)
                      .+-
T Consensus       241 GAN  243 (496)
T COG1003         241 GAN  243 (496)
T ss_pred             Ccc
Confidence            984

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.94  E-value=1.3e-07  Score=84.41  Aligned_cols=271  Identities=19%  Similarity=0.242  Sum_probs=158.3

Q ss_pred             eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCCh-HHHHhhcCcee---------eEEEeecCCCCCcChhhHHHHHH
Q 015435          104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNH-PKVFTLAGLSV---------KTYRYYDPATRGLNFQGLLEDLR  173 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~-~~~~~~~G~~~---------~~v~~~~~~~~~~d~~~l~~~i~  173 (407)
                      +|.-||+.|+..+.  ...+.|+|+|+-.+.-..++ .....--+-++         -++.+ ++.++-+|.+.|++...
T Consensus       110 VQp~SGSPANfavY--tall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv-~~~TG~IDYD~Le~~A~  186 (477)
T KOG2467|consen  110 VQPYSGSPANFAVY--TALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKV-DPSTGYIDYDKLEKTAT  186 (477)
T ss_pred             eccCCCCchhhHHH--hhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceee-CCCCCceehHHHHHHHH
Confidence            56788899998884  55588999998766222222 11111111222         22333 56778899999998766


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHHcCceeeecccc-ccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          174 AAPSGAIVLLHACAHNPTGVDPT-LEQWEQIRQLMRSKGLLPFFDSAY-QGFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       174 ~~~~~~~v~i~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~D~~y-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                        .-++.++|-..      ..++ .-|-.++.++|.+.|.+|.+|-++ ++++..+.   ..+..     .-..|+..+.
T Consensus       187 --~frPk~iiaG~------SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~v---ipsPF-----ey~DiVTTTT  250 (477)
T KOG2467|consen  187 --LFRPKLIIAGT------SAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGV---IPSPF-----EYCDIVTTTT  250 (477)
T ss_pred             --hcCCcEEEecc------ccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhccc---CCCcc-----cccceeeccc
Confidence              44566566221      1222 236778888899999999999997 55554331   11111     1234777888


Q ss_pred             CccccccCCCcceeEEeec----C----hhhHHHHHHHHhhhhhcccC-CCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          252 AKNMGLYGERVGALSIVCK----T----EDVASRVESQLKLVIRPMYS-SPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       252 sK~~~~~G~r~G~~~~v~~----~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      .|.+  .|-|-|.+.+--.    +    .+..-.+.++++....+..- +|....+.+.+-+|....     .....+..
T Consensus       251 HKsL--RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~-----tpefk~Yq  323 (477)
T KOG2467|consen  251 HKSL--RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAM-----TPEFKEYQ  323 (477)
T ss_pred             cccc--cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhC-----CHHHHHHH
Confidence            9975  6888777632110    1    11122344444433322222 344333443333343211     12345566


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccCC--ceeEEe----cCCCHHHHHHhHhhccEEEc------------CCC-eEE
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIKQ--IGMFTF----TGLNSEQVAFMTKEYHIYMT------------SDG-RIS  383 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~l~~~gi~~~------------~gg-Ris  383 (407)
                      +++.+|.+.|.+.|.+.|    +......  .-+.+|    .+++...+...|+..+|.+.            ||| ||.
T Consensus       324 ~qV~~Nakala~~l~~~G----y~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiG  399 (477)
T KOG2467|consen  324 KQVLKNAKALASALISRG----YKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIG  399 (477)
T ss_pred             HHHHHHHHHHHHHHHHcC----ceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceecc
Confidence            677789999999999998    5554332  222333    16688888888888888663            445 885


Q ss_pred             ec-----CCCCCChhHHHHHHHHHHH
Q 015435          384 MA-----GLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       384 ~~-----~~~~e~i~~~~~~l~~~l~  404 (407)
                      ..     +..++|+++..+-|.++++
T Consensus       400 tPAmTsRG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  400 TPAMTSRGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             chhhcccCccHHHHHHHHHHHHHHHH
Confidence            32     2356888888888877653

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=98.93  E-value=2.3e-06  Score=84.84  Aligned_cols=276  Identities=12%  Similarity=0.078  Sum_probs=154.2

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhc--C
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY--H  125 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~--~  125 (407)
                      +.++..+..++..+- ++ ....|...++-..+.+.+.+++....+.+  ...-.+  |+|||+|+..++...+...  |
T Consensus        94 ~~~paila~~~a~~~-N~-n~~~~e~SP~~t~lE~~vi~~la~l~G~~--~~~G~~--TsGGT~ANl~aL~~AR~~k~~p  167 (608)
T TIGR03811        94 TLMPAILAYNYAMLW-NG-NNVAYESSPATSQMEEEVGKEFATLMGYK--NGWGHI--VADGSLANLEGLWYARNIKSLP  167 (608)
T ss_pred             CCHHHHHHHHHHHHh-CC-CCCccccCchHHHHHHHHHHHHHHHhCCC--CCCeEE--eCChHHHHHHHHHHHHHhhhcc
Confidence            344445555544444 22 23334334455566666666663333322  233457  9999999987754443321  0


Q ss_pred             ------------------------------------------------C------CeEEecCCCCCChHHHHhhcCc---
Q 015435          126 ------------------------------------------------Q------LTIYIPQPTWGNHPKVFTLAGL---  148 (407)
Q Consensus       126 ------------------------------------------------g------d~Vi~~~p~y~~~~~~~~~~G~---  148 (407)
                                                                      |      -++++++..|.++.+++...|+   
T Consensus       168 ~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~  247 (608)
T TIGR03811       168 FAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLD  247 (608)
T ss_pred             chhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcc
Confidence                                                            0      0578888889999999999999   


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcC--CC-CcEEEEecCCCCCCCCCCCHHHHHHHHHHH---HHcCc--eeeecccc
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAA--PS-GAIVLLHACAHNPTGVDPTLEQWEQIRQLM---RSKGL--LPFFDSAY  220 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~--~~-~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~---~~~~~--~li~D~~y  220 (407)
                      +++.||+  +.++.+|++.|++.+.+.  .. .++.+|-+-+...+|.   .+++++|+++|   +++|+  ++.+|.||
T Consensus       248 ~vv~Vpv--D~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~Ga---iDpl~eI~~l~~~~~~~gl~~~lHVDAAy  322 (608)
T TIGR03811       248 QVIPVPV--DSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGA---VDGIDKIVALRNKLMKEGIYFYLHVDAAY  322 (608)
T ss_pred             cEEEeec--CCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcc---cCCHHHHHHHHHHHHHcCCceeEeeeccc
Confidence            5899998  345789999999988642  22 3344444566777888   45566666666   78897  69999999


Q ss_pred             cccc---CCCCC---------------------chh---HHHH-HHHHcCCcEEEEEecCccccccCCCcceeEEeecCh
Q 015435          221 QGFA---SGSLD---------------------ADA---QSVR-MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTE  272 (407)
Q Consensus       221 ~~~~---~~~~~---------------------~~~---~~~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~  272 (407)
                      .++.   +-+..                     ...   .... .+..-....-+.-.++|.+.. -..+|.+  +.+|+
T Consensus       323 GG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~-Py~~G~l--l~Rd~  399 (608)
T TIGR03811       323 GGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYI-PYSAGGI--VIQDI  399 (608)
T ss_pred             cchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCccccccc-CCCeEEE--EEeCH
Confidence            8863   11000                     000   0011 111112333445678998764 4677888  68887


Q ss_pred             hhHHHHHHHHhhhhh-----------cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435          273 DVASRVESQLKLVIR-----------PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR  339 (407)
Q Consensus       273 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  339 (407)
                      ...+.+.. ...+..           ......+..+..++..++....+ ..=.+.+.++.++..+.++++.+.|+..
T Consensus       400 ~~~~~~~~-~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l-~~G~~Gyg~~i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       400 RMRDVISY-FATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVL-PLNVTGYGKLIGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             HHHHHHhc-CcchhccccccCcccccccceecCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            64443211 111110           00112233332222222211100 0001456677777778888888888774

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.92  E-value=5.9e-07  Score=82.50  Aligned_cols=216  Identities=15%  Similarity=0.117  Sum_probs=136.3

Q ss_pred             CCeeeeeeeeeecCCCccc-cchhHHHHHHHHhccccccccCCCCCC--cHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           31 PVKLNLGVGAYRTEEGKPL-VLNVVRKAEQLLVNDQSRVKEYLPIVG--LVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~g--~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      +.+||++.-..+.+.|.+. .++.+++....+.  ......|.-..|  ..+++ .+++...+..+    .+.+.+  ++
T Consensus        20 ~~viN~~G~v~~t~lG~s~~~~e~iea~~~~~~--~~v~Le~~l~~g~~~~R~~-~~~~~~~~~~~----aea~~i--vn   90 (395)
T COG1921          20 RRVINAIGTVLMTNLGRSLYSPEAIEAMKEAMR--APVELETDLKTGKRGARLT-ELAELLCGLTG----AEAAAI--VN   90 (395)
T ss_pred             hhhhhhhhhheeccCCCccCCHHHHHHHHHHhc--ccceeeeecccchhhHHHH-HHHHHHhcccc----hhheee--EC
Confidence            5677776544445555454 4566665555554  222225544444  22333 34444444432    377888  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecC-----CCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEE
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQ-----PTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL  182 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~-----p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~  182 (407)
                      ..+.|+.++.  . .+.++.+|++.-     ++.++..++++..|++++.+-.    .......+++.+|.  +++.+++
T Consensus        91 nn~aAVll~~--~-al~~~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~----tn~t~~~d~~~AIn--e~ta~ll  161 (395)
T COG1921          91 NNAAAVLLTL--N-ALAEGKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGT----TNRTHLKDYELAIN--ENTALLL  161 (395)
T ss_pred             CcHHHHHHHH--h-hhccCCeEEEEccccccCCCCChhHHHHHcCCEEEEecc----cCcCCHHHHHHHhc--cCCeeEE
Confidence            9999988873  3 333455555432     5788899999999999999954    34578899999998  6677766


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV  262 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  262 (407)
                      -+.+.|.+--..++   +++++++|+++|+.+|+|.+-...+..     .+.++.+.. ....++++|-.|.++  |.+-
T Consensus       162 kV~s~~~~f~~~l~---~~~l~~ia~~~~lpvivD~aSg~~v~~-----e~~l~~~la-~GaDLV~~SgdKllg--GPqa  230 (395)
T COG1921         162 KVHSSNYGFTGMLS---EEELVEIAHEKGLPVIVDLASGALVDK-----EPDLREALA-LGADLVSFSGDKLLG--GPQA  230 (395)
T ss_pred             EEeecccccccccc---HHHHHHHHHHcCCCEEEecCCcccccc-----ccchhHHHh-cCCCEEEEecchhcC--CCcc
Confidence            65665553222344   555667799999999999996655542     223333333 234678899999986  6777


Q ss_pred             ceeEEeecChhhHHHH
Q 015435          263 GALSIVCKTEDVASRV  278 (407)
Q Consensus       263 G~~~~v~~~~~~~~~~  278 (407)
                      |.+   ++.+++.+++
T Consensus       231 Gii---~GkKelI~~l  243 (395)
T COG1921         231 GII---VGKKELIEKL  243 (395)
T ss_pred             ceE---echHHHHHHH
Confidence            777   5555544443

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=2.6e-08  Score=89.58  Aligned_cols=329  Identities=15%  Similarity=0.061  Sum_probs=183.0

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc----cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ----SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ++.+++||.+..+   .+.....+..+.+...+.+-.    +-..-|+...-+.++.+.+++++ |.      ++.|+. 
T Consensus        92 ~G~~~~N~aS~Nf---L~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~-G~------E~aivY-  160 (467)
T KOG1358|consen   92 DGKDVLNFASANF---LGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFM-GT------EDAIVY-  160 (467)
T ss_pred             cCceeecccchhh---hhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhh-CC------cceeee-
Confidence            5678999998876   454446666666666664110    11122555555788899999999 65      256666 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-------CC
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-------PS  177 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-------~~  177 (407)
                       ..|=+..-..+   -+....||-|.+..-........++...-.+.++..+       |.+++++.+.+.       ++
T Consensus       161 -s~gF~ti~S~i---pafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhn-------dm~~lerll~E~~~~~~K~~k  229 (467)
T KOG1358|consen  161 -SYGFSTIESAI---PAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKHN-------DMEDLERLLPEQEDEDQKNPK  229 (467)
T ss_pred             -ccccchhhhcc---hhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecCC-------CHHHHHHhccCcchhhhhccc
Confidence             44333332232   3445689998888877777777777777777777552       555665554322       11


Q ss_pred             ---CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435          178 ---GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN  254 (407)
Q Consensus       178 ---~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
                         ++..+++----.+||.+.+   +.+|+++..||-..+|.||.|+-...+........+ ...+..+-.++++|++-+
T Consensus       230 ~~~~Rrfiv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH-~~v~~~~iDiv~~sm~~a  305 (467)
T KOG1358|consen  230 KALTRRFIVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEH-FGVPITDIDIVTASMETA  305 (467)
T ss_pred             cccceEEEEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccccccccccCcccccc-CCCCccceeeeeeccccc
Confidence               1333333344556888664   888888899999999999998644433110011111 011224566888999888


Q ss_pred             ccccCCCcceeEEeecChhhHHHH--HHHHhhhhhcccC-CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 015435          255 MGLYGERVGALSIVCKTEDVASRV--ESQLKLVIRPMYS-SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQ  331 (407)
Q Consensus       255 ~~~~G~r~G~~~~v~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (407)
                      ++..|   |+.   +++    ..+  ..++... .+..+ +.|+....++..++.-.       ++.....+.++.....
T Consensus       306 las~G---gFc---~G~----~~i~~hQrLSg~-~Y~fSAslPp~la~aa~~ai~i~-------~~~p~~~~~L~~k~~~  367 (467)
T KOG1358|consen  306 LASGG---GFC---AGK----SFIADHQRLSGS-GYCFSASLPPYLAGAAIKAILIE-------EWNPEIVQPLRAKVAK  367 (467)
T ss_pred             ccccC---cee---ecc----eeeEeeeecccc-ceeeeccCchhhhhhHHHHHHHH-------hhCcchhhhhhccccc
Confidence            87554   454   331    111  2222221 11111 23333344444444322       1222344555556666


Q ss_pred             HHHHHHhcCCCCCcccccCCceeEEecCC-----C--------HHHHHHhHhhccEEEcCC-------------C-eEEe
Q 015435          332 LFDALSARGTPGDWSHIIKQIGMFTFTGL-----N--------SEQVAFMTKEYHIYMTSD-------------G-RISM  384 (407)
Q Consensus       332 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~l~~~gi~~~~g-------------g-Ris~  384 (407)
                      +-+.|+....   +.+....-+....+.+     +        .+.++..+.+ ++.+...             + ||++
T Consensus       368 ~H~~l~~~s~---~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~  443 (467)
T KOG1358|consen  368 FHAALSSNSG---FIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICV  443 (467)
T ss_pred             cchhhhcCCc---eEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEE
Confidence            6666655321   3433322222222222     1        1224444454 6666442             1 9988


Q ss_pred             cC-CCCCChhHHHHHHHHHHHh
Q 015435          385 AG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       385 ~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                      .. +++||++++.+.|+++...
T Consensus       444 ~a~~seeel~ra~~~ik~~~~~  465 (467)
T KOG1358|consen  444 SAGMSEEELERAAELIKEVASA  465 (467)
T ss_pred             eCCCCHHHHHHHHHHHHHHHHh
Confidence            65 7899999999999987654

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.82  E-value=5.6e-07  Score=82.62  Aligned_cols=285  Identities=14%  Similarity=0.065  Sum_probs=148.7

Q ss_pred             CceEEeecCCcccHHHHHH-HHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec-CCCCCcChhhHHHHHHcCC
Q 015435           99 NRVTTVQCLSGTGSLRVGA-EFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD-PATRGLNFQGLLEDLRAAP  176 (407)
Q Consensus        99 ~~i~~~~t~g~t~a~~~~~-~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~  176 (407)
                      +..++  ++-+|+---.+. ..++.-..++.|+.+.-.+..-..++..+|.+++.+|... ++....|.+.+++.+++..
T Consensus        75 ~~~~~--vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G  152 (389)
T PF05889_consen   75 KSCFV--VPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEELG  152 (389)
T ss_dssp             CEEEE--ESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHC
T ss_pred             cceEE--EecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHhC
Confidence            45666  666655443332 1122123678999998665556677889999999998642 2233557888888887543


Q ss_pred             CCcEEEEecCCCCCCCCCCCHH-HHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          177 SGAIVLLHACAHNPTGVDPTLE-QWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~~~~~-~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      ....++++++   +++...... ++.+|+++|++||+..|+..||.--..    .-.+.+......+.-.+++-|.-|.|
T Consensus       153 ~~~iLcvltt---tscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~----~~~~~i~~a~~~GRvda~vqS~dkNF  225 (389)
T PF05889_consen  153 ADNILCVLTT---TSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSS----KCMHLIQQAWRVGRVDAFVQSTDKNF  225 (389)
T ss_dssp             GGGEEEEEEE---SSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-H----HHHHHHHHHHHHSTCSEEEEEHHHHH
T ss_pred             CCCeEEEEEe---cCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHH----HHHHHHHHHHhcCCcceeeeecCCCE
Confidence            4445455433   333333344 599999999999999999999963221    12334444445566678899999999


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDA  335 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (407)
                      -.|   +|--++.++++.....+.+.....    .+..|.......+..|...    .|..-+.++.+.+....+.+.++
T Consensus       226 ~VP---vGgai~As~~~~~i~~vs~~YpGR----as~sp~ld~~itLl~LG~~----g~~~ll~~r~~~f~~l~erl~~~  294 (389)
T PF05889_consen  226 MVP---VGGAIMASFDPSGILAVSKEYPGR----ASASPSLDLFITLLSLGCT----GYGALLKERKASFPYLKERLKKW  294 (389)
T ss_dssp             CEE---SSHEEEEESSHHHHHHHHHTSHSH----BTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Eec---CCCcEEEecCHHHHHHHHHHhhhh----hhcccchHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            643   344333677666554443322111    1133333333333333322    23333444444444444444444


Q ss_pred             HHhcCCCCCcccccCCceeEEe-cCCC------HHHHHHhHhhccEE----EcCCC-------------eEEe---cCCC
Q 015435          336 LSARGTPGDWSHIIKQIGMFTF-TGLN------SEQVAFMTKEYHIY----MTSDG-------------RISM---AGLS  388 (407)
Q Consensus       336 l~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~l~~~gi~----~~~gg-------------Ris~---~~~~  388 (407)
                      -++.+.- -.+.......+..- ..+.      .-++-..|..++|.    +.+.+             -+.+   .+++
T Consensus       295 aee~~e~-ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~  373 (389)
T PF05889_consen  295 AEEVGER-LLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMT  373 (389)
T ss_dssp             HHHTTEE-BSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--
T ss_pred             HHHhhhh-hcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCC
Confidence            4444310 01111111222221 1221      23566777777773    33332             2332   3478


Q ss_pred             CCChhHHHHHHHHHHH
Q 015435          389 SKTVPHLTDAIHAAVT  404 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~  404 (407)
                      +||++.++++|+++++
T Consensus       374 ~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  374 REEVDYFVKRLDKIIK  389 (389)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=98.80  E-value=8.1e-09  Score=83.84  Aligned_cols=66  Identities=14%  Similarity=0.197  Sum_probs=56.7

Q ss_pred             ccCCCCCCcHHHHHHHHHHHhCCCC--CCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC
Q 015435           69 KEYLPIVGLVDFNKLSAKLILGADS--PAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN  138 (407)
Q Consensus        69 ~~y~~~~g~~~l~~~~a~~~~~~~~--~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~  138 (407)
                      ..|.+..|.++||+++++++...++  ..+++++|++  |+|+++++++++  ...+.+||.|++++|+|+.
T Consensus        86 a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivv--t~Ga~~al~~l~--~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         86 ALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVL--SAGATAANEIIM--FCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             hcCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEE--cCCHHHHHHHHH--HHHcCCCCEEEEeCCCCCC
Confidence            3488889999999999999966555  4577899999  999999999994  5558899999999999974

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.59  E-value=2.1e-05  Score=81.15  Aligned_cols=273  Identities=16%  Similarity=0.183  Sum_probs=154.3

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhc--CCCeEEecCCCCCChHHHHh----hcCcee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY--HQLTIYIPQPTWGNHPKVFT----LAGLSV  150 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~--~gd~Vi~~~p~y~~~~~~~~----~~G~~~  150 (407)
                      +.++.+.++++. +.     +..|..+  ..++|.+-+++.... ...  ++++|++++-.|+.+...++    ..|+++
T Consensus       111 l~e~Qt~i~eLt-Gm-----~~aNaSl--~d~atA~aEa~~~a~-~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v  181 (939)
T TIGR00461       111 LLNFQTVVSDLT-GL-----PVANASL--LDEGTAAAEAMALSF-NVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEV  181 (939)
T ss_pred             HHHHHHHHHHHH-CC-----Chhhhhc--cchhhHHHHHHHHHH-HhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEE
Confidence            556677777766 53     2357788  889999888774221 122  34789999999998887666    778888


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++.          +++++.+    ++..+++ .+| |-+|.+   +|+++|+++++++|.+++++.--..+..-.   
T Consensus       182 ~~~~~----------~~l~~~~----~~~~v~~-q~P-n~~G~i---ed~~~i~~~~h~~gal~~~~ad~~al~ll~---  239 (939)
T TIGR00461       182 IVVDC----------SDIKKAV----DVFGCLL-QYP-ATDGSI---LDYKQLIDALHSHKSLVSVAADLMALTLLT---  239 (939)
T ss_pred             EEEcH----------HHHhhcC----CEEEEEE-ECC-CCCeEE---ecHHHHHHHHHHcCCEEEEEechHHhCCcC---
Confidence            77743          3454433    3455555 344 346774   479999999999999999855332222210   


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccc----cCCCcceeEEeecChhhHHHH---------------------HHHHhhh
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGL----YGERVGALSIVCKTEDVASRV---------------------ESQLKLV  285 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~v~~~~~~~~~~---------------------~~~~~~~  285 (407)
                         +    +....-.|++++ +|.||.    .|-..|++  .+. +++.+.+                     ..+-.++
T Consensus       240 ---~----Pge~GaDi~vg~-~q~fg~p~g~GGP~aG~~--a~~-~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhI  308 (939)
T TIGR00461       240 ---P----PGHYGADIVLGS-SQRFGVPMGYGGPHAAFF--AVK-DEYNRKMPGRIVGVSKDALGNTALRLALQTREQHI  308 (939)
T ss_pred             ---C----HHHcCCcEEeeC-CCccCCCCCCCCCceeee--eec-HhhHhhCCCCceeEEecCCCCccceeecccccccc
Confidence               1    111122344443 444443    34446666  243 2222211                     0000111


Q ss_pred             hhcccCCCChhHHHHHHHHhcChhhHHhH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEe--cC--
Q 015435          286 IRPMYSSPPIHGASIVATILKDSTMYKEW--TLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTF--TG--  359 (407)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~--  359 (407)
                      .+-. .+++.....++.+...  .++-.|  .+.++++.++...+..++.+.|.+.|    ++...+  .+|-.  +.  
T Consensus       309 rRek-AtSNICt~qaL~a~~a--~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G----~~~~~~--~fF~~~~v~~~  379 (939)
T TIGR00461       309 RRDK-ATSNICTAQVLLANVA--SSYCVYHGPKGLKNIARRIHSLTSILANGLENDP----HELINK--TWFDTLTVKVG  379 (939)
T ss_pred             cccc-cCcchhHHHHHHHHHH--HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCC----CcccCC--CccceEEEEeC
Confidence            1111 1222222222221111  000000  14577888889999999999999988    454333  23321  12  


Q ss_pred             -CCHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHH
Q 015435          360 -LNSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIH  400 (407)
Q Consensus       360 -~~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~  400 (407)
                       .+.+.+.+.+.++||.+...+    ++|+.. .+++|++.+++.+.
T Consensus       380 ~~~~~~i~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       380 NGISSELLKAAEEFNINLRAVDTTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             CCCHHHHHHHHHHCCCeeeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence             245666666677899887542    677665 46688998888884

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.53  E-value=7e-06  Score=75.09  Aligned_cols=220  Identities=14%  Similarity=0.098  Sum_probs=128.2

Q ss_pred             ceEEeecCCcccHHHHHHHHHHhhc--CC----------CeEE-ecCCCCCChHHHHhhcC---ceeeEEEeecCCCCCc
Q 015435          100 RVTTVQCLSGTGSLRVGAEFLARHY--HQ----------LTIY-IPQPTWGNHPKVFTLAG---LSVKTYRYYDPATRGL  163 (407)
Q Consensus       100 ~i~~~~t~g~t~a~~~~~~~~~~~~--~g----------d~Vi-~~~p~y~~~~~~~~~~G---~~~~~v~~~~~~~~~~  163 (407)
                      +=++  ++||+-++-.+..+.+ .+  |+          +-|+ .++-++.+...++..+|   -.++.|+.  .+.+.+
T Consensus       161 DgIf--~pggsisn~Ya~~~Ar-yk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t--~e~Gkm  235 (510)
T KOG0629|consen  161 DGIF--APGGSISNMYAMNCAR-YKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKT--DERGKM  235 (510)
T ss_pred             Ccee--cCCchhHHHHHHHHHH-hhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCceeEEecc--cccCcc
Confidence            4556  7777666655532222 21  22          2243 34467888888888888   57778887  445789


Q ss_pred             ChhhHHHHHHcCCCC---cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435          164 NFQGLLEDLRAAPSG---AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA  240 (407)
Q Consensus       164 d~~~l~~~i~~~~~~---~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~  240 (407)
                      .+++|++.|.+...+   +.+ +  |.+-.|.+.-.-++|..|+++|++|++|+.+|.||.+...-+.  + +.. .+..
T Consensus       236 ~~~dLe~kile~k~kg~~Pf~-v--naTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~--k-~R~-kl~G  308 (510)
T KOG0629|consen  236 IPDDLEKKILEAKAKGGVPFF-V--NATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSR--K-HRH-KLTG  308 (510)
T ss_pred             chHHHHHHHHHHHhcCCCCeE-E--EecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccCh--h-hHh-hccC
Confidence            999999998755333   343 2  2344565556678999999999999999999999976333211  1 111 1111


Q ss_pred             cCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh------hcccCCCChhHHHHHHHHhc---ChhhH
Q 015435          241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI------RPMYSSPPIHGASIVATILK---DSTMY  311 (407)
Q Consensus       241 ~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~---~~~~~  311 (407)
                      -.+.--+..+..|.+| ..+.++..  ++..+.    +........      +...+..+   --+..+.++   +.+.+
T Consensus       309 iera~SvtwnpHK~~g-aplqCsa~--l~r~~g----ll~~Cn~~~A~YLFq~dK~YdvS---~DTgdK~iQCGRh~D~F  378 (510)
T KOG0629|consen  309 IERANSVTWNPHKLMG-APLQCSAF--LTREEG----LLQRCNQMSAIYLFQQDKFYDVS---YDTGDKAIQCGRHVDVF  378 (510)
T ss_pred             ccccCceeecHHHhhc-CcchhhHH--HHHHHH----HHHhhcccchhhhhccCceeecc---cccccchhhcCccccHH
Confidence            1122245567889888 55777777  455322    222222111      10000111   001111111   11222


Q ss_pred             HhH---H----HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015435          312 KEW---T----LELKAMADRIISMRQQLFDALSARGT  341 (407)
Q Consensus       312 ~~~---~----~~~~~~~~~~~~~~~~l~~~l~~~~~  341 (407)
                      ..|   +    ...++..++..++.+|+.+.+++.+.
T Consensus       379 KlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~  415 (510)
T KOG0629|consen  379 KLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREG  415 (510)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence            111   1    34678889999999999999999864

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.48  E-value=2.5e-07  Score=84.28  Aligned_cols=160  Identities=16%  Similarity=0.198  Sum_probs=35.7

Q ss_pred             CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCC---C---CChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHH
Q 015435           99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPT---W---GNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDL  172 (407)
Q Consensus        99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~---y---~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i  172 (407)
                      +..++  +++...|+.++   +..+.+|.+|+++.-.   +   +...++++..|++++.|-..    ....+++.+++|
T Consensus        63 eaA~V--vNnnaAAv~L~---l~~la~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt----N~t~~~Dye~AI  133 (367)
T PF03841_consen   63 EAALV--VNNNAAAVLLA---LNTLAKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT----NRTHLSDYEKAI  133 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccc--ccccccccccc---ccccccccccccccccccccccccccccccccccccccccccc----cccccccccccc
Confidence            67777  88888888777   3445578888877622   2   23556788899999999653    456789999999


Q ss_pred             HcCCCCcEEEEecCCCCCC--CCCCCHHHHHHHHHHHHHcCceeeeccccccccC---CCCCchhHHHHHHHHcCCcEEE
Q 015435          173 RAAPSGAIVLLHACAHNPT--GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS---GSLDADAQSVRMFVADGGECLV  247 (407)
Q Consensus       173 ~~~~~~~~v~i~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~---~~~~~~~~~~~~~~~~~~~~i~  247 (407)
                      +  +++.+++- .+++|-.  |..- .-.++++++++++|++++|+|..-..+..   -+.+ +.+.+..+.. ....++
T Consensus       134 ~--e~Ta~ll~-Vh~Sn~~i~GFt~-~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~-~Ep~v~~~~~-~GaDlV  207 (367)
T PF03841_consen  134 T--ENTAALLK-VHTSNFRIQGFTG-EVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLP-DEPTVQEYLA-AGADLV  207 (367)
T ss_dssp             -------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCC-CT-SEE
T ss_pred             c--cccccccc-ccccccccccccc-cccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCc-cccHHHHHhh-cCCCEE
Confidence            8  67777655 4445552  3221 12578888889999999999997522221   0010 1122222222 345688


Q ss_pred             EEecCccccccCCCcceeEEeecChhhHHHH
Q 015435          248 AQSYAKNMGLYGERVGALSIVCKTEDVASRV  278 (407)
Q Consensus       248 ~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~  278 (407)
                      ++|-.|.+|  |...|.+   ++.+++.+++
T Consensus       208 ~fSGdKlLG--GPQaGiI---~Gkk~lI~~l  233 (367)
T PF03841_consen  208 TFSGDKLLG--GPQAGII---VGKKELIEKL  233 (367)
T ss_dssp             EEETTSSSS--S-S-EEE---EEEHHHHHHH
T ss_pred             EEECCCcCC--CCCeEEE---EeCHHHHHHH
Confidence            999999987  5566777   4445544443

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.46  E-value=9.8e-06  Score=73.19  Aligned_cols=322  Identities=18%  Similarity=0.126  Sum_probs=162.5

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc-------ccccCCC-CCCcHHHHHHHHHHHhCCCCCCCCCCceE
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS-------RVKEYLP-IVGLVDFNKLSAKLILGADSPAIKDNRVT  102 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~y~~-~~g~~~l~~~~a~~~~~~~~~~~~~~~i~  102 (407)
                      +...|||.|=    .  ..|+++++.+...+.+-.+       ..|+--+ ..-+.+.++.+.+++ +...    .-+|+
T Consensus         4 ~~~~nFsaGP----a--~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl-~iPd----~Y~Vl   72 (365)
T COG1932           4 PRVYNFSAGP----A--ALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELL-NIPD----DYKVL   72 (365)
T ss_pred             CCCCCCCCCc----c--cCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHh-CCCC----CceEE
Confidence            4577888662    1  3477777777776651111       1121111 112455566666666 4321    24677


Q ss_pred             EeecCCc-ccHHHHHHHHHHhhcCCCe--EEecCCCCCChHHHHhhcCc--eeeEEEeecCCCC--CcChhhHHHHHHcC
Q 015435          103 TVQCLSG-TGSLRVGAEFLARHYHQLT--IYIPQPTWGNHPKVFTLAGL--SVKTYRYYDPATR--GLNFQGLLEDLRAA  175 (407)
Q Consensus       103 ~~~t~g~-t~a~~~~~~~~~~~~~gd~--Vi~~~p~y~~~~~~~~~~G~--~~~~v~~~~~~~~--~~d~~~l~~~i~~~  175 (407)
                      +  ..|| |+...++  .+.++.+...  |..-.-+-..+. .++..+.  ++...... ..++  -+++++..  +.  
T Consensus        73 f--lqGGat~qf~~~--p~nLl~~~~~~yv~~g~Ws~~a~~-eA~~~~~~~~~~~~~~~-~~~~~~iP~~~~~~--~~--  142 (365)
T COG1932          73 F--LQGGATGQFAMA--PMNLLGKRGTDYVDTGAWSEFAIK-EAKKVGKQPKLIDARIE-EAGYGSIPDLSKWD--FS--  142 (365)
T ss_pred             E--EcCccHHHHHHH--HHhhhcccCceeEeeeehhHhHHH-HHHHhccccccccccee-ccCccCCCChhhcc--cC--
Confidence            7  6655 6666666  3555554332  433322222222 2334442  22222211 1111  22333222  11  


Q ss_pred             CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      .+...+.+ |.-++-+|+-++  +...+   ..  +.++|+|....-+... .           +-..-.++-.|.-|.+
T Consensus       143 ~~~ayv~~-~~NeTi~Gv~v~--~~p~~---~~--~~~~v~D~SS~ilsr~-i-----------Dvsk~dviyagaQKnl  202 (365)
T COG1932         143 DNDAYVHF-CWNETISGVEVP--ELPDI---GS--DGLLVADASSAILSRP-I-----------DVSKYDVIYAGAQKNL  202 (365)
T ss_pred             CCccEEEE-ecCCcccceEcc--CCCCC---CC--CceEEEecccHHhcCC-C-----------ChhHcceEEEehhhcc
Confidence            12222333 222333477554  22222   11  2789999864433321 1           1123456778899999


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHH-Hhh--------hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQ-LKL--------VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                      |..|  ++.+  +.+ +++.++.... +..        ....++.+||+.+.+.....++-.  ..  +-.++.+.++-+
T Consensus       203 GpaG--ltvv--Ivr-~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wl--k~--~GGl~~~~~rn~  273 (365)
T COG1932         203 GPAG--LTVV--IVR-PDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWL--KS--QGGLEALEARNQ  273 (365)
T ss_pred             Cccc--eEEE--EEc-HHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHH--HH--cCCHHHHHHHHH
Confidence            9887  5555  344 4433333221 111        112333466666666555444311  00  013778888889


Q ss_pred             HHHHHHHHHHHhcCCCCCcc-cc--cCCceeEEec-----CCCHHHHHHhHhhccEEEcCC-----C-eEEecC-CCCCC
Q 015435          327 SMRQQLFDALSARGTPGDWS-HI--IKQIGMFTFT-----GLNSEQVAFMTKEYHIYMTSD-----G-RISMAG-LSSKT  391 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~-~~--~~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~g-----g-Ris~~~-~~~e~  391 (407)
                      ++.+.|.+.+.+.+.   +. ..  ..+.-+.+..     .++..++.++ +++|+....|     | |+++.. ++.|+
T Consensus       274 ~ka~~LY~~id~s~f---y~~~v~~~~RS~mnV~f~~~~~~ld~~fv~ea-e~~gl~~lkGhr~vgGmRasiynA~~~e~  349 (365)
T COG1932         274 AKAQLLYDWIDKSDF---YRNLVAKANRSRMNVTFTLVDAELDKGFVAEA-EAAGLIYLKGHRSVGGLRASIYNAVPLED  349 (365)
T ss_pred             HHHHHHHHHHHhCCc---cccccchhhccceeEEEEcCcHHHHHHHHHHH-HHcCCceeccccCCCceeeeeecCCCHHH
Confidence            999999999998763   21 11  1222222222     2344445555 4466666543     5 999876 78899


Q ss_pred             hhHHHHHHHHHHHhh
Q 015435          392 VPHLTDAIHAAVTRM  406 (407)
Q Consensus       392 i~~~~~~l~~~l~~~  406 (407)
                      ++.+++.++.+.++.
T Consensus       350 veaL~~fm~~f~~~~  364 (365)
T COG1932         350 VEALTDFMDWFEETY  364 (365)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988765

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.46  E-value=1.4e-05  Score=75.28  Aligned_cols=218  Identities=17%  Similarity=0.212  Sum_probs=115.2

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhc-CCCeEEecCCCCCChHHHHh----hcCceee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY-HQLTIYIPQPTWGNHPKVFT----LAGLSVK  151 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~-~gd~Vi~~~p~y~~~~~~~~----~~G~~~~  151 (407)
                      +.++...++++. +.+     .-|.-+  -.++|.+-+++....+..+ ++++|+++...++.+...++    ..|++++
T Consensus       112 lfe~Qs~i~eLT-Gmd-----vaNaSl--yd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv  183 (429)
T PF02347_consen  112 LFEYQSMICELT-GMD-----VANASL--YDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIV  183 (429)
T ss_dssp             HHHHHHHHHHHH-TSS-----EE-SEB--SSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEE
T ss_pred             HHHHHHHHHHhh-CCC-----ccCCCC--CChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEE
Confidence            556677778776 542     134556  7788888887742233222 23599999999998888555    5799999


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      .++.. + +...|        .  +++..+++ .+|+ -.|.   .+++++|+++++++|.++|+ .+. ........  
T Consensus       184 ~~~~~-~-~~~~d--------~--~~~a~v~v-q~Pn-~~G~---~ed~~~i~~~~h~~gal~~~-~ad-~~aL~~l~--  242 (429)
T PF02347_consen  184 EVPLD-E-DGTTD--------D--DDTAAVMV-QNPN-TFGV---FEDIKEIADIAHAAGALVIV-GAD-PNALGGLK--  242 (429)
T ss_dssp             EE-BB-T-TCSB---------S--TTEEEEEE-ESS--TTSB-----THHHHHHHHHHTT-EEEE-CGG-CCGCCTC---
T ss_pred             Eeccc-c-cCCcc--------c--cCeEEEEe-ecCC-CCce---EeeHHHHHHHHHHcCCEEEE-ecC-HHHHhCcC--
Confidence            99883 2 23333        2  56777777 5554 3566   55699999999999988887 432 12222111  


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccc----cCCCcceeEEeecChhhHHHHHHHH---------------------hhhh
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGL----YGERVGALSIVCKTEDVASRVESQL---------------------KLVI  286 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~v~~~~~~~~~~~~~~---------------------~~~~  286 (407)
                        +    +....-.|++++ +|.||.    .|-..|++  .+. +++...+-.++                     .++.
T Consensus       243 --~----Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~--a~~-~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIr  312 (429)
T PF02347_consen  243 --S----PGEYGADIVVGE-HQTFGIPMGFGGPGAGFF--AVR-EDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIR  312 (429)
T ss_dssp             -------GGGGT-SEEEEC-CTTTT---CCC-S--EEE--EE--GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHH
T ss_pred             --C----hhhcCccEEeeC-CCCCcccCCCCCCCeeeE--EEh-hhhhhhCCCceecccccccccceeeecccccccccc
Confidence              1    111223455665 777753    34556776  344 22222211110                     0111


Q ss_pred             h---cccCCCChhHHH-HHHHHhc-ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435          287 R---PMYSSPPIHGAS-IVATILK-DSTMYKEWTLELKAMADRIISMRQQLFDALSAR  339 (407)
Q Consensus       287 ~---~~~~~~~~~~~~-~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  339 (407)
                      +   ....+++...+. ++..++. .+      .+.++++.++...+..|+.+.|.+.
T Consensus       313 ReKAtSNIctnqaL~A~~a~~Yl~~~G------~~GL~~iA~~~~~~A~yl~~~L~~~  364 (429)
T PF02347_consen  313 REKATSNICTNQALLALAAAIYLAYLG------PEGLREIAERIHLNAHYLAERLKKI  364 (429)
T ss_dssp             GCCSTT---SS-HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1   111233332222 1222221 12      2568888999999999999999886

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=98.43  E-value=0.00051  Score=63.49  Aligned_cols=294  Identities=17%  Similarity=0.218  Sum_probs=160.8

Q ss_pred             cccccccCCCCC-----C----cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC--CCeEEec
Q 015435           64 DQSRVKEYLPIV-----G----LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH--QLTIYIP  132 (407)
Q Consensus        64 ~~~~~~~y~~~~-----g----~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~--gd~Vi~~  132 (407)
                      ++.....|+|-+     |    +.++...++++. +..     -.|..+  -.++|.+=+++. +.....+  ..+++++
T Consensus       100 ~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLT-Gm~-----VANASm--~DeaTAaAEAm~-ma~r~~k~k~~~~~V~  170 (450)
T COG0403         100 NPEWYTAYTPYQPEISQGRLEALFEFQTLVADLT-GLD-----VANASM--LDEATAAAEAML-MAKRVTKKKRNKFLVP  170 (450)
T ss_pred             CccccccCCCCchhhhhHHHHHHHHHHHHHHHHh-CCC-----cccchh--hhhHHHHHHHHH-HHHHhhcCcCceEEec
Confidence            455666777732     3    455666677766 532     256777  788888888875 3333443  5789999


Q ss_pred             CCCCCChHHHHh----hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHH
Q 015435          133 QPTWGNHPKVFT----LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMR  208 (407)
Q Consensus       133 ~p~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~  208 (407)
                      .-.|+.+.+.++    ..|.+++.++.+       |.+++++. . ...+..+++ -.|+ -.|  ....++++|.+.++
T Consensus       171 ~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~-~-~~~~~gv~v-QyP~-~~G--~~~~d~~~l~~~~h  237 (450)
T COG0403         171 KDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESA-D-DGDVFGVLV-QYPN-TFG--IVEEDLRALIEAAH  237 (450)
T ss_pred             CCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhc-c-ccCeEEEEE-ecCC-CCC--ccchhHHHHHHHHh
Confidence            999999999887    446777777552       66777776 3 235567777 3333 235  23668999999999


Q ss_pred             HcCceeeeccccccccCCCCCchhHHHHHH--HHcCCcEEEEEecCcc---ccccCCCcceeEEeecChhhHH-------
Q 015435          209 SKGLLPFFDSAYQGFASGSLDADAQSVRMF--VADGGECLVAQSYAKN---MGLYGERVGALSIVCKTEDVAS-------  276 (407)
Q Consensus       209 ~~~~~li~D~~y~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~---~~~~G~r~G~~~~v~~~~~~~~-------  276 (407)
                      ++|.++++=.=            ..++..+  +......|++++..-.   +|..|-.+|+.  .+. +++..       
T Consensus       238 ~~~al~~v~aD------------plaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPhag~f--A~~-~~~~R~mPGRlV  302 (450)
T COG0403         238 SAGALVIVAAD------------PLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYF--AVK-DEFKRQMPGRLV  302 (450)
T ss_pred             hcCCEEEEEec------------hhHhhccCCccccCCceEEecCcccCCCcCCCCcceeee--eEh-HhHhhcCCCcee
Confidence            99977765221            1111111  1223445666654332   34456667776  344 22111       


Q ss_pred             --------------HHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          277 --------------RVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEW--TLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       277 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                                    .+..+-.++.+-. -++++....++.+.+..  ++.-|  .+.+.++..+..++..++.+.|++.+
T Consensus       303 G~S~D~~G~~A~rLaLQTREQHIRReK-ATSNICTnQaLlA~~As--~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~  379 (450)
T COG0403         303 GVSVDAAGKRAFRLALQTREQHIRREK-ATSNICTNQALLALAAS--MYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIG  379 (450)
T ss_pred             eeeecCCCCchhhhhHHHHHHHHhhhc-cchhhhHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence                          1122222222211 12233222222222221  11111  15688889999999999999999654


Q ss_pred             CCCCcccccCCceeEEe--cCCCHHHHHHh---HhhccEEEcCCC--eEEec--C-CCCCChhHHHHHHHH
Q 015435          341 TPGDWSHIIKQIGMFTF--TGLNSEQVAFM---TKEYHIYMTSDG--RISMA--G-LSSKTVPHLTDAIHA  401 (407)
Q Consensus       341 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---l~~~gi~~~~gg--Ris~~--~-~~~e~i~~~~~~l~~  401 (407)
                      ..  ++....  .+|--  +.+..+....+   ....|+-+..-.  ++.++  . .++++++.+++.+..
T Consensus       380 ~g--~~~~~~--~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~  446 (450)
T COG0403         380 AG--VELVFD--HFFDTFTVRVPEEVAEALLAAAIAGGINLRRVDADTVLIALTETTTKEDIDALVAAFGG  446 (450)
T ss_pred             Cc--eEeccc--cceeeEEEecchhHHHHHHHHHHhcCCceeeecCCceEEEeecccCHHHHHHHHHHHhh
Confidence            10  343322  34432  24442333333   333566665532  55444  2 244666666666654

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=98.34  E-value=4.5e-05  Score=70.69  Aligned_cols=93  Identities=17%  Similarity=0.213  Sum_probs=72.8

Q ss_pred             EEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---CCCcEEEEecCCCCCCCCCCCHHHHHHHHH
Q 015435          129 IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA---PSGAIVLLHACAHNPTGVDPTLEQWEQIRQ  205 (407)
Q Consensus       129 Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~---~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~  205 (407)
                      +..++-++.+..++....|++.+.++.  +.++++..+.|++++.+.   .-.+.+++. +.  .|..+-+-+++.+|..
T Consensus       185 ~Y~SDqahssveka~~i~~VklR~l~t--d~n~~mr~~~L~~AIe~D~arGlIPf~v~a-t~--GTT~~ca~D~l~elg~  259 (511)
T KOG0628|consen  185 AYCSDQAHSSVEKACLIAGVKLRALPT--DENFGMRGDTLRKAIEEDIARGLIPFFVCA-TL--GTTSSCAFDELEELGP  259 (511)
T ss_pred             EEecCcccchHHHhHhhcceeEEEeec--ccCcCCCHHHHHHHHHHHHhCCCccEEEEE-ee--cCccccccccHHHhcc
Confidence            445668899999999999999999998  348999999999999754   234666662 32  2333334679999999


Q ss_pred             HHHHcCceeeeccccccccCC
Q 015435          206 LMRSKGLLPFFDSAYQGFASG  226 (407)
Q Consensus       206 ~~~~~~~~li~D~~y~~~~~~  226 (407)
                      +|+++|+||.+|.+|++-.+.
T Consensus       260 Vc~~~glWLHVDAAYAGsa~i  280 (511)
T KOG0628|consen  260 VCREEGLWLHVDAAYAGSAFI  280 (511)
T ss_pred             hhhhcCEEEEeehhhcccccc
Confidence            999999999999999876653

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=98.26  E-value=2.4e-05  Score=69.96  Aligned_cols=215  Identities=8%  Similarity=0.176  Sum_probs=115.5

Q ss_pred             hhhHHHHHHcC--CCCcEEEEecCCCCCC-CC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435          165 FQGLLEDLRAA--PSGAIVLLHACAHNPT-GV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA  240 (407)
Q Consensus       165 ~~~l~~~i~~~--~~~~~v~i~~~p~NPt-G~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~  240 (407)
                      ++++++.|.+.  .+.+++-++.-|-..- |- --|++.+++|.++|+|||+.+|+||+..+.+..|   +.|....+.-
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG---k~WaHehw~l  331 (484)
T KOG1405|consen  255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG---KFWAHEHWNL  331 (484)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC---ceeeehhcCC
Confidence            56666666432  1223322223443333 32 4789999999999999999999999988777665   5666666532


Q ss_pred             cCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHH
Q 015435          241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKA  320 (407)
Q Consensus       241 ~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  320 (407)
                      .....++  +|||.|-..|    +.    -+++++..  ...+.+ ..|..-|..  ...+..+++...        -+.
T Consensus       332 ~~PpD~v--TFSKK~q~gG----ff----h~~~frpn--~pYrif-NTWmGdP~k--~lll~~vv~~I~--------~~~  388 (484)
T KOG1405|consen  332 DSPPDVV--TFSKKFQTGG----FF----HDEEFRPN--EPYRIF-NTWMGDPSK--NLLLEEVVQEIK--------RED  388 (484)
T ss_pred             CCCccce--ehhhhhhcCc----cc----cCcccCCC--chHHHh-hhhcCChHH--HHHHHHHHHHHh--------HHH
Confidence            2222232  4899987544    43    22222111  011111 122222222  222222222111        122


Q ss_pred             HHHHHHHHHHHHHHHHHhc--CCCCCcccccCCceeEEecCCC---HHHHHHhHhhccEEEcCCC----eEEecC-CCCC
Q 015435          321 MADRIISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFTGLN---SEQVAFMTKEYHIYMTSDG----RISMAG-LSSK  390 (407)
Q Consensus       321 ~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e  390 (407)
                      +.......-++|...|.++  .+|..+.-....|.|..|---+   .+.+...++-.|+.+..+|    |+..+- ..+.
T Consensus       389 Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps~~~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~  468 (484)
T KOG1405|consen  389 LLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAWDCPSGSIRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKH  468 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEEeCCChHHHHHHHHHHHHcCceecccccceeeeccceeehhh
Confidence            3334445556666666654  2333355555566655553222   2344455566899988887    664332 2556


Q ss_pred             ChhHHHHHHHHHHHh
Q 015435          391 TVPHLTDAIHAAVTR  405 (407)
Q Consensus       391 ~i~~~~~~l~~~l~~  405 (407)
                      -.+.+++++.+++..
T Consensus       469 Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  469 HADIFLDIFDKILAG  483 (484)
T ss_pred             hHHHHHHHHHHHhcc
Confidence            678888888887764

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.95  E-value=0.002  Score=66.56  Aligned_cols=283  Identities=17%  Similarity=0.219  Sum_probs=148.4

Q ss_pred             cccccccCCCCC-----C----cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC--CCeEEec
Q 015435           64 DQSRVKEYLPIV-----G----LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH--QLTIYIP  132 (407)
Q Consensus        64 ~~~~~~~y~~~~-----g----~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~--gd~Vi~~  132 (407)
                      ++.....|+|-+     |    +.++...++++. +..     -.|..+  -.++|.+-+++.. .....+  ..+|+++
T Consensus       104 ~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~Lt-Gm~-----vaNASl--~D~atA~aEA~~m-a~~~~~~k~~~~~v~  174 (954)
T PRK12566        104 NPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLT-GLD-----LANASL--LDEATAAAEAMAL-AKRVAKSKSNRFFVD  174 (954)
T ss_pred             CchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHh-Cch-----hhhhhh--ccchhHHHHHHHH-HHHHhhcCCCEEEEC
Confidence            344455666633     3    556677777766 542     135556  6677777776532 222222  4689999


Q ss_pred             CCCCCChHHHHh----hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHH
Q 015435          133 QPTWGNHPKVFT----LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMR  208 (407)
Q Consensus       133 ~p~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~  208 (407)
                      +-.++.+...++    ..|++++.             +++++.+.  .+...+++ -+|+ -.|.+   +++++|.++++
T Consensus       175 ~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~~--~~~~~v~v-q~P~-~~G~i---~d~~~i~~~~h  234 (954)
T PRK12566        175 EHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLAA--HAVFGALL-QYPD-THGEI---RDLRPLIDQLH  234 (954)
T ss_pred             CCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcCC--CCEEEEEE-ECCC-CceEE---ccHHHHHHHHH
Confidence            999998888766    44555543             23333333  34566666 3443 35774   67999999999


Q ss_pred             HcCceeeeccccccccCCCCCchhHHHHHH--HHcCCcEEEEE---ecCccccccCCCcceeEEeecChhhHHHH-----
Q 015435          209 SKGLLPFFDSAYQGFASGSLDADAQSVRMF--VADGGECLVAQ---SYAKNMGLYGERVGALSIVCKTEDVASRV-----  278 (407)
Q Consensus       209 ~~~~~li~D~~y~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~---s~sK~~~~~G~r~G~~~~v~~~~~~~~~~-----  278 (407)
                      ++|.++| +.+.           ..++..+  +......|+++   +|+=-+|..|-..|++  .+. +++...+     
T Consensus       235 ~~gal~~-~~~d-----------~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~--a~~-~~~~R~~PGRiv  299 (954)
T PRK12566        235 GQQALAC-VAAD-----------LLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGPHAAYF--ACR-DDYKRAMPGRII  299 (954)
T ss_pred             HcCCEEE-EEeC-----------HHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCCCeeee--eeh-HHHHhhCCCCcc
Confidence            9998766 3331           1111111  12223345555   2333344456666777  344 2222211     


Q ss_pred             ----------------HHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          279 ----------------ESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEW--TLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       279 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                                      ..+-.++.+-. -+++.....++.+.+.  .++.-|  .+.++++.++...+..++.+.|.+.|
T Consensus       300 G~s~D~~G~~a~~l~LqtREQHIRReK-AtSNICT~qaL~A~~a--~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g  376 (954)
T PRK12566        300 GVSRDARGNTALRMALQTREQHIRREK-ANSNICTAQVLLANIA--GFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKG  376 (954)
T ss_pred             ceeecCCCCeeeehhhhHHHHHhhhcc-ccchhhHHHHHHHHHH--HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                            11111111111 1222222222222221  111111  14577888889999999999999977


Q ss_pred             CCCCcccccCCceeEEec--CC--CHHHHHHhHhhccEEEcCC--CeE--EecC-CCCCChhHHHHHH
Q 015435          341 TPGDWSHIIKQIGMFTFT--GL--NSEQVAFMTKEYHIYMTSD--GRI--SMAG-LSSKTVPHLTDAI  399 (407)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~l~~~gi~~~~g--gRi--s~~~-~~~e~i~~~~~~l  399 (407)
                          ++....  .+|--+  .+  ..+.+.....+.||.++--  +++  |+.. .+.+|+..++..+
T Consensus       377 ----~~~~~~--~fF~~~~v~~~~~~~~~~~~a~~~~~n~r~~~~~~~~~s~de~~~~~~~~~~~~~f  438 (954)
T PRK12566        377 ----IKRLNR--HFFDTLTLEVGGAQAAIIESAEAARINLRILGRGRLGVSLDETCDEATVARLFDIF  438 (954)
T ss_pred             ----CccccC--CccceEEEEccCCHHHHHHHHHHCCCeeEEeCCCeEEEEeCCCCCHHHHHHHHHHh
Confidence                443222  344321  22  3444555555577776553  344  4443 3457777777666

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.70  E-value=0.01  Score=57.75  Aligned_cols=143  Identities=17%  Similarity=0.206  Sum_probs=97.4

Q ss_pred             ccccCCC---CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh--cCCC---e-EEecCCCCC
Q 015435           67 RVKEYLP---IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH--YHQL---T-IYIPQPTWG  137 (407)
Q Consensus        67 ~~~~y~~---~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~--~~gd---~-Vi~~~p~y~  137 (407)
                      .+|.|.|   .+|+.++-+.+.+++...-+.    +.+.+ |-++|.++-+.-+...+..  .+|+   . -++|...+.
T Consensus       567 nIHPF~P~eQaqGY~~lf~~Le~~Lc~iTG~----D~~s~-QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHG  641 (1001)
T KOG2040|consen  567 NIHPFAPVEQAQGYQQLFTELEKDLCEITGF----DSFSL-QPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHG  641 (1001)
T ss_pred             cCCCCCchHHHhhHHHHHHHHHHHhheeecc----cceee-cCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccC
Confidence            4666766   457777777777777333221    44444 4666665554443233332  2443   2 366777888


Q ss_pred             ChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC-CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeee
Q 015435          138 NHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS-GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF  216 (407)
Q Consensus       138 ~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~-~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~  216 (407)
                      .....+.++|.++++|.+  ..++.+|..+|+++.+++.. -.+++| ..|+. -|+.  .+.+++++++.++||--+..
T Consensus       642 TNPASA~MagmkvvpV~~--~~~G~id~~dLk~kaekh~~~Laa~Mv-TYPST-~Gvf--E~~i~d~cd~iHehGGQVYl  715 (1001)
T KOG2040|consen  642 TNPASAAMAGMKVVPVGC--DANGNIDMVDLKAKAEKHKDNLAALMV-TYPST-HGVF--EEGIDDICDIIHEHGGQVYL  715 (1001)
T ss_pred             CChhhHHhcCCEEEEeec--cCCCCccHHHHHHHHHHhhhhhheeEE-ecccc-cccc--cccHHHHHHHHHhcCCEEEe
Confidence            888888999999999998  55688999999998876543 355555 44431 2443  66899999999999999999


Q ss_pred             cccc
Q 015435          217 DSAY  220 (407)
Q Consensus       217 D~~y  220 (407)
                      |.+-
T Consensus       716 DGAN  719 (1001)
T KOG2040|consen  716 DGAN  719 (1001)
T ss_pred             cCCC
Confidence            9984

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=97.25  E-value=0.014  Score=50.65  Aligned_cols=197  Identities=13%  Similarity=0.086  Sum_probs=108.3

Q ss_pred             CeEEecCCCCCChHHHHhhcCceeeEEEe-ecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHH
Q 015435          127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRY-YDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQ  205 (407)
Q Consensus       127 d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~  205 (407)
                      .-|+-+.-.-.+-...+-.+|..++.+.- .+.+..-.|++.+++.+.+-....+++++++  ...=.--+++.+++|+.
T Consensus       104 kyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~st--tscfapr~pd~leaiaa  181 (432)
T KOG3843|consen  104 KYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHST--TSCFAPRSPDNLEAIAA  181 (432)
T ss_pred             cEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeec--ccccCCCCCchHHHHHH
Confidence            34554433222333445577887776643 2222234588999998886545556666321  11112245789999999


Q ss_pred             HHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh
Q 015435          206 LMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV  285 (407)
Q Consensus       206 ~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~  285 (407)
                      +|..|++.-|+..+|.--...    -.+-+......++-..++-|+-|.|..|   +|..+ ++.   +.+.++..+...
T Consensus       182 ica~~diphivnnayglqsee----~i~~iaa~~~~grida~vqsldknf~vp---vggai-ia~---fk~n~iq~iak~  250 (432)
T KOG3843|consen  182 ICAAHDIPHIVNNAYGLQSEE----CIHKIAAAAECGRIDAFVQSLDKNFMVP---VGGAI-IAA---FKDNFIQEIAKM  250 (432)
T ss_pred             HHHccCchhhhccccccchHH----HHHHHHHHhhhccHHHHHHHhhhcceee---cchhH-hhH---hHHHHHHHHHHh
Confidence            999999999999998532211    2233333334445556778999999755   44432 222   223333333332


Q ss_pred             hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          286 IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      -..-.+..|.....+.+..+...    .|.+-+.++++.+.+++..+.+.-+..|
T Consensus       251 ypgrasa~ps~dllitll~~gqn----~f~e~~~eqkemf~~l~~ki~~~ae~~~  301 (432)
T KOG3843|consen  251 YPGRASASPSLDLLITLLSLGQN----AFKELFGEQKEMFLKLRNKIIKFAEAIG  301 (432)
T ss_pred             CCCccccCccHHHHHHHHHhchh----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            22222344555555554443332    2444455666666666666666555554

>PLN02672 methionine S-methyltransferase

Probab=96.32  E-value=0.091  Score=55.92  Aligned_cols=200  Identities=14%  Similarity=0.112  Sum_probs=122.5

Q ss_pred             hhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh----hcCCC
Q 015435           52 NVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR----HYHQL  127 (407)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~----~~~gd  127 (407)
                      +.+......+.  ......|.|+.|...+|..++.++...+..+++++||++  .++-..|++.++++.+-    ++.+.
T Consensus       405 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (1082)
T PLN02672        405 PFLAYLASALK--GLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVV--FPSRAVAIENALRLFSPRLAIVDEHL  480 (1082)
T ss_pred             cHHHHHHHHHc--cCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEE--eccHHHHHHHHHHhhChHHHhhhhhh
Confidence            33444445554  445677889999999999999999666788899999999  99999999998544321    22222


Q ss_pred             eEEecCCCCCChHHHHhhcC--------ceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHH
Q 015435          128 TIYIPQPTWGNHPKVFTLAG--------LSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQ  199 (407)
Q Consensus       128 ~Vi~~~p~y~~~~~~~~~~G--------~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~  199 (407)
                      +-.++.    .|...+...|        -.+..+.-  +.    .-+.+.+.++  .-++-++++.-.+   +-..+...
T Consensus       481 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~  545 (1082)
T PLN02672        481 TRWLPK----KWLTSLAIENATSDSKSDDVITVIEA--PR----QSDLVIELIK--KLKPQVVVTGMAD---FEMRTSTA  545 (1082)
T ss_pred             hccCCH----HHHhHhhhhcccccCccCCeEEEEeC--CC----cchHHHHHHH--hCCCeEEEEeccc---hhhhhHHH
Confidence            211111    1222222222        22222211  11    1234555555  2344555533322   44455778


Q ss_pred             HHHHHHHHHHcCceeeeccc-cccccCCCCCchhHHHHHHHH---cCCcEEEEEecCccccccCCCcceeEEeecChhhH
Q 015435          200 WEQIRQLMRSKGLLPFFDSA-YQGFASGSLDADAQSVRMFVA---DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA  275 (407)
Q Consensus       200 l~~i~~~~~~~~~~li~D~~-y~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~  275 (407)
                      ++.|.+.+++.|.+|+.|.. |..+...+   ...++..+..   ...+..++.++-|+--.+.+.+.++  +.-++.+.
T Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  620 (1082)
T PLN02672        546 FEHLLNVTAEIGARLFLDISDHLELSSLP---GSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFV--ISENEAVL  620 (1082)
T ss_pred             HHHHHHHHHhhCcEEEEehhhheeeccCC---CcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEE--ecCcHHHH
Confidence            99999999999999999986 44444332   3334444432   2356777888888876688999998  45554433

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=96.25  E-value=0.19  Score=44.42  Aligned_cols=322  Identities=16%  Similarity=0.149  Sum_probs=162.0

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc-------ccccCCCCCC-cHHHHHHHHHHHhCCCCCCCCCCce
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS-------RVKEYLPIVG-LVDFNKLSAKLILGADSPAIKDNRV  101 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~y~~~~g-~~~l~~~~a~~~~~~~~~~~~~~~i  101 (407)
                      .++++||+.|-.      ..|++++.++...+.+-.+       ..|+-....+ +.+....+.+++ +...    .-.|
T Consensus         5 ~~~vvnFaaGPA------klp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLl-niPd----n~~v   73 (370)
T KOG2790|consen    5 PERVVNFAAGPA------KLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELL-NIPD----NYKV   73 (370)
T ss_pred             ccceeecCCCcc------cCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHH-cCCC----ceeE
Confidence            468999997731      4588888888887762110       1111111111 344445556655 4321    2367


Q ss_pred             EEeecCCcccHHHHHHHHHHhhcCC---CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCC--CcChhhHHHHHHcCC
Q 015435          102 TTVQCLSGTGSLRVGAEFLARHYHQ---LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATR--GLNFQGLLEDLRAAP  176 (407)
Q Consensus       102 ~~~~t~g~t~a~~~~~~~~~~~~~g---d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~--~~d~~~l~~~i~~~~  176 (407)
                      +++|..|+++ ..++..-+..+..|   |-|+.-..+-..+..+-+..-.+.+..+.. +..+  -+|.+..+.    .+
T Consensus        74 lf~QGGGt~q-FaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k-~y~ygkvPd~~~w~~----~~  147 (370)
T KOG2790|consen   74 LFLQGGGTGQ-FAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLK-SYTYGKVPDPSTWEL----NP  147 (370)
T ss_pred             EEEeCCCccc-ccccchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEecccc-ccccCcCCChhhccc----CC
Confidence            7765555444 44432112123445   445555444334444433333334444442 2232  234333332    24


Q ss_pred             CCcEEEEecCCCCCC--CCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435          177 SGAIVLLHACAHNPT--GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN  254 (407)
Q Consensus       177 ~~~~v~i~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
                      +...+++   |.|.|  |+-++.-.      +-.-+|..++.|-. +.|...+.           +.....++..+.-|.
T Consensus       148 da~yvyy---CaNETVHGVEf~~~P------~~~~~~~vlVaDmS-SnflSrpv-----------Dvsk~gvi~aGAQKN  206 (370)
T KOG2790|consen  148 DASYVYY---CANETVHGVEFDFIP------VNDPKGAVLVADMS-SNFLSRPV-----------DVSKFGVIFAGAQKN  206 (370)
T ss_pred             CccEEEE---ecCceeeceecCCCC------CCCCCCceEEEecc-cchhcCCc-----------cchhcceEEeccccc
Confidence            4555555   35666  77544211      22446889999984 55654422           223346677788999


Q ss_pred             ccccCCCcceeEEeecChhhHHHHHHHHhhhh------------hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          255 MGLYGERVGALSIVCKTEDVASRVESQLKLVI------------RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       255 ~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      +|..|+-  .+  +.+     +.+........            ...+.++|..+.++.-..++...  +  +-.+..+.
T Consensus       207 ~G~aG~T--vv--ivr-----~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il--~--~GGl~a~e  273 (370)
T KOG2790|consen  207 VGPAGVT--VV--IVR-----KDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWIL--E--KGGLAAME  273 (370)
T ss_pred             cCccccE--EE--EEe-----hhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHH--h--cccHHHHH
Confidence            9988753  11  244     22222111110            12223555555554433333110  0  01255666


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCccc--ccCC--cee---EEec--CCCHHHHHHhHhhccEEEcC-----CC-eEEecC-
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSH--IIKQ--IGM---FTFT--GLNSEQVAFMTKEYHIYMTS-----DG-RISMAG-  386 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~--~~~---~~~~--~~~~~~~~~~l~~~gi~~~~-----gg-Ris~~~-  386 (407)
                      +.-.+..+++.+.+.+...   +-.  ..|.  .-+   |..-  .+..+++....++ ++.-..     || |-|+.. 
T Consensus       274 ~~n~~KskllYd~iD~s~g---fy~cpVe~~~RS~MNV~Fri~~d~Le~eFLkeA~~~-~mv~LKGhRSVGGiRASlYNA  349 (370)
T KOG2790|consen  274 KLNQEKSKLLYDAIDNSNG---FYRCPVEPSVRSRMNVPFRIEKDELEAEFLKEAAKE-HMVQLKGHRSVGGIRASLYNA  349 (370)
T ss_pred             HHHHHHHHHHHHHHHhcCC---eEEcccchhhhhhcccceeecchHHHHHHHHHHHHh-hhhccccccccccchhhhhcc
Confidence            7777888999999987621   221  1121  111   1111  2345566666554 333333     34 888765 


Q ss_pred             CCCCChhHHHHHHHHHHHhh
Q 015435          387 LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++-++++.+++.++++.+..
T Consensus       350 isv~~~q~L~~~m~~F~k~h  369 (370)
T KOG2790|consen  350 ISVEEVQKLAAFMKEFQKKH  369 (370)
T ss_pred             ccHHHHHHHHHHHHHHHHhc
Confidence            67799999999999887653

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=95.72  E-value=0.67  Score=41.49  Aligned_cols=132  Identities=19%  Similarity=0.139  Sum_probs=87.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC---eEEecCCCCCChH----HHHhhcCc
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL---TIYIPQPTWGNHP----KVFTLAGL  148 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd---~Vi~~~p~y~~~~----~~~~~~G~  148 (407)
                      +.+..-..++... +.     .+++|.+  .++-|--+..+  +.+...|-.   +|+...-+|++-.    ..++..|.
T Consensus       112 ~De~il~l~~~iV-GA-----~e~Evav--mNsLTvNlh~L--l~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~  181 (465)
T KOG3846|consen  112 IDEPILPLLAPIV-GA-----QENEVAV--MNSLTVNLHSL--LISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGI  181 (465)
T ss_pred             cchhhhhhhhhhc-cC-----Cchhhhh--HhhhhhHHHHH--HHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCC
Confidence            3445556666666 32     2478988  88888888877  455566543   5787776666543    44456677


Q ss_pred             eeeEE--EeecCC--CCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc
Q 015435          149 SVKTY--RYYDPA--TRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ  221 (407)
Q Consensus       149 ~~~~v--~~~~~~--~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~  221 (407)
                      .+...  .+ .+.  ...+-.+++.+.|+......++++.+-.+.-||..++   +.+|-..-+..|+++=.|-+++
T Consensus       182 ~~e~sm~~i-ePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHA  254 (465)
T KOG3846|consen  182 SPENSMIQI-EPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHA  254 (465)
T ss_pred             ChHHheEEe-cccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhh
Confidence            65432  22 122  2346678899988865545555555888999999875   7777755666799999998864

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=89.08  E-value=27  Score=35.17  Aligned_cols=296  Identities=17%  Similarity=0.214  Sum_probs=141.6

Q ss_pred             HHHHhccccccccCCCCC-----C----cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCe
Q 015435           58 EQLLVNDQSRVKEYLPIV-----G----LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT  128 (407)
Q Consensus        58 ~~~~~~~~~~~~~y~~~~-----g----~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~  128 (407)
                      .+.+.+++....+|+|-+     |    +..+...+++.- +     ++-.|..+  ..-||.|-+++. +.....++.+
T Consensus       137 ~RNilenp~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlT-G-----L~~aNASL--LDEgTAaaEAm~-l~~~~~krkk  207 (1001)
T KOG2040|consen  137 LRNILENPGWYTQYTPYQAEISQGRLESLLNYQTMITDLT-G-----LPMANASL--LDEGTAAAEAMA-LCNRINKRKK  207 (1001)
T ss_pred             HHHhhhCCcceeccCCCchhhhhhhHHHHhhhHHhhhhcc-C-----Ccccchhh--hccchhHHHHHH-HHHhhcccce
Confidence            344443566777887733     2    112233333333 3     22356666  677888888774 3334557778


Q ss_pred             EEecCCCCCChHHHHh----hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHH
Q 015435          129 IYIPQPTWGNHPKVFT----LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIR  204 (407)
Q Consensus       129 Vi~~~p~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~  204 (407)
                      .++...+|+.....++    .+|++++..          |+++...   .......+++ -.|. --|.+.   +..+++
T Consensus       208 ~vvd~~~hpqtlsV~~TRa~~~~i~v~~~----------~~~~~~~---s~~~v~gvlv-QYP~-t~G~i~---d~~el~  269 (1001)
T KOG2040|consen  208 FVVDSNCHPQTLSVVKTRAKGFGIKVVVS----------DIKEADY---SSKDVSGVLV-QYPD-TEGSVL---DFDELV  269 (1001)
T ss_pred             EEecCCCCcchhhhhhccccccceeEEec----------CHHHhhc---cccceeEEEE-EcCC-CCCccc---CHHHHH
Confidence            8888899998888776    223332221          2222221   1123344555 2222 235544   577777


Q ss_pred             HHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc----CCCcceeE--------------
Q 015435          205 QLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY----GERVGALS--------------  266 (407)
Q Consensus       205 ~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~--------------  266 (407)
                      +.+++.|.++++-.--..+..-          .-+......|.++| |.-||.|    |-..|+..              
T Consensus       270 ~~a~~~~s~vv~atDLLaLtiL----------rpPgefGaDIavGS-sQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRii  338 (1001)
T KOG2040|consen  270 ELAHANGSLVVMATDLLALTIL----------RPPGEFGADIAVGS-SQRFGVPLGYGGPHAAFFAVSESLVRMMPGRII  338 (1001)
T ss_pred             HHhhccCceEEEeehhhHHHcc----------CChhhcCceeeecc-ccccCccccCCCchHHHHHHHHHHHhhCCCceE
Confidence            7799998776643211111110          00122344566666 3333322    21112210              


Q ss_pred             EeecC----hhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHH--HHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          267 IVCKT----EDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWT--LELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       267 ~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      =++.|    +.++-.+..+-.++.+-.. +++.....++++=+.  .++.-|+  ..+++..+++....-.|...|+..|
T Consensus       339 GvtkD~~gk~a~RLALQTREQHIrRDKA-TSNICTAQALLANma--AmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~ag  415 (1001)
T KOG2040|consen  339 GVTKDALGKEAYRLALQTREQHIRRDKA-TSNICTAQALLANMA--AMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAG  415 (1001)
T ss_pred             eeeecccccHHHHHHHHHHHHHhhhhcc-chhhhHHHHHHHHHH--HHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            01111    1111122222222222221 233333333222211  1111122  4678888888888999999998887


Q ss_pred             CCCCcccccCCceeEEec----CCCHHHHHHhHhhccEEE--cCCCeEEec--C-CCCCChhHHHHHHH
Q 015435          341 TPGDWSHIIKQIGMFTFT----GLNSEQVAFMTKEYHIYM--TSDGRISMA--G-LSSKTVPHLTDAIH  400 (407)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~~--~~ggRis~~--~-~~~e~i~~~~~~l~  400 (407)
                          .++...  .||-.+    +-+.+.+.....+++|-+  ...+-|+++  . ++++|++.++..+.
T Consensus       416 ----hel~~k--~fFDTLkI~~~~s~~~~l~rA~~~~iNlr~~ed~tigvslDETv~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  416 ----HELQHK--PFFDTLKIRCGCSAEEVLDRAAKRQINLRLVEDGTIGVSLDETVTEKDVDDLLWVFN  478 (1001)
T ss_pred             ----hhhccc--cccceEEEEecCcHHHHHHHHHhhcCceEEeecCceEEeecccccHHHHHHHHHHHc
Confidence                343322  145433    335666554444455544  344544443  2 45577776665553

>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex)

Probab=84.70  E-value=2.3  Score=39.61  Aligned_cols=71  Identities=11%  Similarity=0.022  Sum_probs=49.3

Q ss_pred             hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeee
Q 015435          139 HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF  216 (407)
Q Consensus       139 ~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~  216 (407)
                      ..+.+...++++..+.+.|..++.+.....-+.-.  .. ..    .....+.|..++++|+++|++.|+++|+-||-
T Consensus        23 ~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~--~g-a~----~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP   93 (329)
T cd06568          23 YIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTE--IG-GS----TEVGGGPGGYYTQEDYKDIVAYAAERHITVVP   93 (329)
T ss_pred             HHHHHHHhCCcEEEEEeecCCcceeeecCcccccc--cc-cc----cccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence            34555678999999999877777776555444322  11 10    11234557789999999999999999988873

SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=82.30  E-value=1.9  Score=43.33  Aligned_cols=34  Identities=15%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             CCCHHHHHHHHHHHHHcCceeeeccccccccCCC
Q 015435          194 DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGS  227 (407)
Q Consensus       194 ~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~  227 (407)
                      .-++++++++++.|+++|+-||+|=+|..|..++
T Consensus       210 yGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~  243 (628)
T COG0296         210 YGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDG  243 (628)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCc
Confidence            3449999999999999999999999999988643

>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides

Probab=82.28  E-value=4  Score=37.53  Aligned_cols=68  Identities=12%  Similarity=0.075  Sum_probs=48.0

Q ss_pred             HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceee
Q 015435          140 PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPF  215 (407)
Q Consensus       140 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li  215 (407)
                      .+.+...+.++..+.+.|..++.+.....-++-... ..      .++ .+.|..++++|+++|++.|+++|+-||
T Consensus        22 id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g-~~------~~~-~~~~~~yT~~di~elv~yA~~rgI~vi   89 (303)
T cd02742          22 IDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKG-GQ------INP-RSPGGFYTYAQLKDIIEYAAARGIEVI   89 (303)
T ss_pred             HHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhc-cc------ccC-CCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence            445567899999999987777777665555443311 11      111 234567999999999999999998887

These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	407
7aat_A	401	X-Ray Structure Refinement And Comparison Of Three		1e-129
1aka_A	401	Structural Basis For The Catalytic Activity Of Aspa		1e-129
3pd6_A	401	Crystal Structure Of Mouse Mitochondrial Aspartate		1e-126
3hlm_A	401	Crystal Structure Of Mouse Mitochondrial Aspartate		1e-125
2cst_A	411	Crystal Structure Of The Closed Form Of Chicken Cyt		1e-125
1aat_A	411	Oxoglutarate-Induced Conformational Changes In Cyto		1e-124
1ajs_A	412	Refinement And Comparison Of The Crystal Structures		1e-121
1ajr_A	412	Refinement And Comparison Of The Crystal Structures		1e-121
3ii0_A	422	Crystal Structure Of Human Glutamate Oxaloacetate T		1e-120
1asl_A	396	Crystal Structures Of Escherichia Coli Aspartate Am		1e-100
1ix6_A	396	Aspartate Aminotransferase Active Site Mutant V39f		1e-100
1asf_A	396	The Structural Basis For The Reduced Activity Of Th		1e-100
2aat_A	396	2.8-Angstroms-Resolution Crystal Structure Of An Ac		1e-99
2q7w_A	396	Structural Studies Reveals The Inactivation Of E. C		1e-99
1aia_A	396	Structural Basis For The Catalytic Activity Of Aspa		1e-99
4f5m_A	406	Wild-type E. Coli Aspartate Aminotransferase: A Tem		1e-99
1aam_A	396	The Structural Basis For The Altered Substrate Spec		2e-99
1asb_A	396	The Structural Basis For The Reduced Activity Of Th		3e-99
3aat_A	396	Activity And Structure Of The Active-Site Mutants R		3e-99
1ix8_A	396	Aspartate Aminotransferase Active Site Mutant V39fN		4e-99
1b4x_A	396	Aspartate Aminotransferase From E. Coli, C191s Muta		5e-99
1g4v_A	396	Aspartate Aminotransferase Active Site Mutant N194a		5e-99
2d5y_A	396	Aspartate Aminotransferase Mutant Mc With Isovaleri		6e-99
1ahy_A	396	Aspartate Aminotransferase Hexamutant Length = 396		6e-99
1qis_A	396	Aspartate Aminotransferase From Escherichia Coli, C		7e-99
1qit_A	396	Aspartate Aminotransferase From Escherichia Coli, C		7e-99
1qir_A	396	Aspartate Aminotransferase From Escherichia Coli, C		7e-99
2d61_A	396	Aspartate Aminotransferase Mutant Ma With Maleic Ac		8e-99
1bqa_A	396	Aspartate Aminotransferase P195a Mutant Length = 39		1e-98
1ari_A	396	Aspartate Aminotransferase, W140h Mutant, Maleate C		1e-98
1arh_A	396	Aspartate Aminotransferase, Y225rR386A MUTANT Lengt		2e-98
1g7w_A	396	Aspartate Aminotransferase Active Site Mutant N194a		2e-98
1g4x_A	396	Aspartate Aminotransferase Active Site Mutant N194a		2e-98
1toe_A	396	Unliganded Structure Of Hexamutant + A293d Mutant O		4e-98
4f5f_A	406	Structure Of Aspartate Aminotransferase Conversion		8e-98
3zzj_A	396	Structure Of An Engineered Aspartate Aminotransfera		9e-98
1bqd_A	396	Aspartate Aminotransferase P138aP195A DOUBLE MUTANT		9e-98
2d66_A	396	Aspartate Aminotransferase Mutant Mab Length = 396		1e-97
1g7x_A	396	Aspartate Aminotransferase Active Site Mutant N194a		2e-97
1czc_A	396	Aspartate Aminotransferase Mutant Atb17139S142N WIT		1e-96
4eu1_A	409	Structure Of A Mitochondrial Aspartate Aminotransfe		2e-96
1toj_A	396	Hydrocinnamic Acid-Bound Structure Of Srhept Mutant		3e-96
1tog_A	396	Hydrocinnamic Acid-Bound Structure Of Srhept + A293		3e-96
4f5h_A	406	Intercoversion Of Substrate Specificity: E. Coli As		4e-96
2d64_A	396	Aspartate Aminotransferase Mutant Mabc With Isovale		4e-96
4f5i_A	406	Substrate Specificity Conversion Of E. Coli Pyridox		8e-96
4f5j_A	406	Rational Design And Directed Evolution For Conversi		2e-95
1yoo_A	396	Aspartate Aminotransferase Mutant Atb17 With Isoval		2e-95
1yaa_A	412	Aspartate Aminotransferase From Saccharomyces Cerev		3e-95
4f5g_A	406	Rational Design And Directed Evolution Of E. Coli A		8e-95
4f5k_A	406	Substrate Specificity Conversion Of Aspartate Amino		1e-94
4h51_A	420	Crystal Structure Of A Putative Aspartate Aminotran		4e-93
3meb_A	448	Structure Of Cytoplasmic Aspartate Aminotransferase		4e-92
4f4e_A	420	Crystal Structure Of Aromatic-Amino-Acid Aminotrans		9e-91
4eff_A	420	Crystal Structure Of Aromatic-Amino-Acid Aminotrans		9e-91
3tat_A	397	Tyrosine Aminotransferase From E. Coli Length = 397		4e-87
3fsl_A	397	Crystal Structure Of Tyrosine Aminotransferase Trip		4e-87
3uak_A	406	Crystal Structure Of De Novo Designed Cysteine Este		6e-84
1ay4_A	394	Aromatic Amino Acid Aminotransferase Without Substr		6e-71
3k7y_A	405	Aspartate Aminotransferase Of Plasmodium Falciparum		4e-60
3rq1_A	418	Crystal Structure Of Aminotransferase Class I And I		2e-13
2x5f_A	430	Crystal Structure Of The Methicillin-Resistant Stap		1e-08
4emy_A	413	Crystal Structure Of Aminotransferase From Anaeroco		4e-07

>pdb|7AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms Of Mitochondrial Aspartate Aminotransferase Length = 401

Iteration: 1
 Score =  459 bits (1180), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/397 (54%), Positives = 282/397 (71%), Gaps = 2/397 (0%)
Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VLN VRKAE ++   
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61
Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
           +   KEYLPI GL DF + SA+L LG +S A K  R  TVQ +SGTGSLRVGA FL R +
Sbjct: 62  KMD-KEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 120
Query: 125 H-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 183
                +Y+P+P+WGNH  +F  AGL ++ YRYYDP T  L+F G +ED+   P  +I+LL
Sbjct: 121 KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILL 180
Query: 184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243
           HACAHNPTGVDP  EQW+++  +++ + LL +FD AYQGFASG ++ DA ++R F+  G 
Sbjct: 181 HACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240
Query: 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT 303
           + +++QSYAKNMGLYGER GA +++C+  + A RVESQLK++IRPMYS+PP++GA I + 
Sbjct: 241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASL 300
Query: 304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSE 363
           IL    + KEW +E+K MADRIISMR QL   L   G+  +W HI  QIGMF FTGL  E
Sbjct: 301 ILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 360
Query: 364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIH 400
           QV  +TKE+ IYMT DGRIS+AG++S  V +L  AIH
Sbjct: 361 QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIH 397

>pdb|1AKA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking Its Pyridoxal-5'-Phosphate-Binding Lysine Residue Length = 401

Iteration: 1
 Score =  456 bits (1174), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/397 (54%), Positives = 281/397 (70%), Gaps = 2/397 (0%)
Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VLN VRKAE ++   
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61
Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
           +   KEYLPI GL DF + SA+L LG +S A K  R  TVQ +SGTGSLRVGA FL R +
Sbjct: 62  KMD-KEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 120
Query: 125 H-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 183
                +Y+P+P+WGNH  +F  AGL ++ YRYYDP T  L+F G +ED+   P  +I+LL
Sbjct: 121 KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILL 180
Query: 184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243
           HACAHNPTGVDP  EQW+++  +++ + LL +FD AYQGFASG ++ DA ++R F+  G 
Sbjct: 181 HACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240
Query: 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT 303
           + +++QSYA NMGLYGER GA +++C+  + A RVESQLK++IRPMYS+PP++GA I + 
Sbjct: 241 DVVLSQSYAHNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASL 300
Query: 304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSE 363
           IL    + KEW +E+K MADRIISMR QL   L   G+  +W HI  QIGMF FTGL  E
Sbjct: 301 ILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 360
Query: 364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIH 400
           QV  +TKE+ IYMT DGRIS+AG++S  V +L  AIH
Sbjct: 361 QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIH 397

>pdb|3PD6|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate Aminotransferase, A Newly Identified Kynurenine Aminotransferase-Iv Length = 401

Iteration: 1
 Score =  447 bits (1151), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/389 (55%), Positives = 274/389 (70%), Gaps = 2/389 (0%)
Query: 13  APEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL 72
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYL
Sbjct: 10  GPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYL 68
Query: 73  PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYI 131
           PI GL +F K SA+L LG ++  +K  R  TVQ +SGTG+LRVGA FL R +     +++
Sbjct: 69  PIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFL 128
Query: 132 PQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPT 191
           P+P+WGNH  +F  AG+ ++ YRYYDP T G +F G LED+   P  +++LLHACAHNPT
Sbjct: 129 PKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHNPT 188
Query: 192 GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY 251
           GVDP  EQW++I  +++ K L  FFD AYQGFASG  D DA +VR F+  G    + QSY
Sbjct: 189 GVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSY 248
Query: 252 AKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMY 311
           AKNMGLYGERVGA ++VCK  + A RVESQLK++IRP+YS+PP++GA I ATIL    + 
Sbjct: 249 AKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGARIAATILTSPDLR 308
Query: 312 KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKE 371
           K+W  E+K MADRIISMR QL   L   G+  +W HI  QIGMF FTGL  EQV  +TKE
Sbjct: 309 KQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKE 368
Query: 372 YHIYMTSDGRISMAGLSSKTVPHLTDAIH 400
           + +YMT DGRIS+AG++S  V +L  AIH
Sbjct: 369 FSVYMTKDGRISVAGVTSGNVGYLAHAIH 397

>pdb|3HLM|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate AminotransferaseKYNURENINE AMINOTRANSFERASE IV Length = 401

Iteration: 1
 Score =  445 bits (1145), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/389 (55%), Positives = 273/389 (70%), Gaps = 2/389 (0%)
Query: 13  APEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL 72
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYL
Sbjct: 10  GPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYL 68
Query: 73  PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYI 131
           PI GL +F K SA+L LG ++  +K  R  TVQ +SGTG+LRVGA FL R +     +++
Sbjct: 69  PIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFL 128
Query: 132 PQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPT 191
           P+P+WGNH  +F  AG+ ++ YRYYDP T G +F G LED+   P  +++LLHACAHNPT
Sbjct: 129 PKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHNPT 188
Query: 192 GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY 251
           GVDP  EQW++I  +++ K L  FFD AYQGFASG  D DA +VR F+  G    + QSY
Sbjct: 189 GVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSY 248
Query: 252 AKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMY 311
           A NMGLYGERVGA ++VCK  + A RVESQLK++IRP+YS+PP++GA I ATIL    + 
Sbjct: 249 AXNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGARIAATILTSPDLR 308
Query: 312 KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKE 371
           K+W  E+K MADRIISMR QL   L   G+  +W HI  QIGMF FTGL  EQV  +TKE
Sbjct: 309 KQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKE 368
Query: 372 YHIYMTSDGRISMAGLSSKTVPHLTDAIH 400
           + +YMT DGRIS+AG++S  V +L  AIH
Sbjct: 369 FSVYMTKDGRISVAGVTSGNVGYLAHAIH 397

>pdb|2CST|A Chain A, Crystal Structure Of The Closed Form Of Chicken Cytosolic Aspartate Aminotransferase At 1.9 Angstroms Resolution Length = 411

Iteration: 1
 Score =  445 bits (1145), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/408 (52%), Positives = 283/408 (69%), Gaps = 6/408 (1%)
Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           S+F  + RAP   +  +T  + +D    K+NLGVGAYRT+EG+P VL VVRK EQL+  D
Sbjct: 3   SIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQPWVLPVVRKVEQLIAGD 62
Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
            S   EYLPI+GL +F   ++++ LG DSPAI   RV +VQ L GTG+LR+GAEFL R Y
Sbjct: 63  GSLNHEYLPILGLPEFRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFLRRWY 122
Query: 125 H-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSG 178
           +        +Y+  PTW NH  VF  AG   ++TYRY+D A RGL+ QGLL+D+  AP  
Sbjct: 123 NGNNNTATPVYVSSPTWENHNSVFMDAGFKDIRTYRYWDAAKRGLDLQGLLDDMEKAPEF 182
Query: 179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF 238
           +I +LHACAHNPTG DPT ++W+QI  +M+ + L PFFDSAYQGFASGSLD DA +VR F
Sbjct: 183 SIFILHACAHNPTGTDPTPDEWKQIAAVMKRRCLFPFFDSAYQGFASGSLDKDAWAVRYF 242
Query: 239 VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGA 298
           V++G E   AQS++KN GLY ERVG LS+V K ED   RV SQ++ ++R  +S+PP  GA
Sbjct: 243 VSEGFELFCAQSFSKNFGLYNERVGNLSVVGKDEDNVQRVLSQMEKIVRTTWSNPPSQGA 302
Query: 299 SIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT 358
            IVAT L    ++ EW   +K MADR++ MR +L   L + GTPG W+HI  QIGMF+FT
Sbjct: 303 RIVATTLTSPQLFAEWKDNVKTMADRVLLMRSELRSRLESLGTPGTWNHITDQIGMFSFT 362
Query: 359 GLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           GLN +QV +M KE HIY+ + GRI+M GL++K + ++  +IH AVT++
Sbjct: 363 GLNPKQVEYMIKEKHIYLMASGRINMCGLTTKNLDYVAKSIHEAVTKI 410

>pdb|1AAT|A Chain A, Oxoglutarate-Induced Conformational Changes In Cytosolic Aspartate Aminotransferase Length = 411

Iteration: 1
 Score =  440 bits (1131), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/408 (51%), Positives = 282/408 (69%), Gaps = 6/408 (1%)
Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           S+F  + RAP   +  +T  + +D    K+NLGVGAYRT+EG+P VL VVRK EQL+  +
Sbjct: 3   SIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQPWVLPVVRKVEQLIAGN 62
Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
            S   EYLPI+GL +F   ++++ LG DSPAI   RV +VQ L GTG+LR+GAEFL R Y
Sbjct: 63  GSLNHEYLPILGLPEFRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFLRRWY 122
Query: 125 H-----QLTIYIPQPTWGNHPKVFTLAGLS-VKTYRYYDPATRGLNFQGLLEDLRAAPSG 178
           +        +Y+  PTW NH  VF  AG   ++TYRY+D A RGL+ QGLL D+  AP  
Sbjct: 123 NGNNNTATPVYVSSPTWENHNSVFMDAGFKDIRTYRYWDAAKRGLDLQGLLSDMEKAPEF 182
Query: 179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF 238
           +I +LHACAHNPTG DPT ++W+QI  +M+ + L PFFDSAYQGFASG+L+ DA +VR F
Sbjct: 183 SIFILHACAHNPTGTDPTPDEWKQIAAVMKRRCLFPFFDSAYQGFASGNLEKDAWAVRYF 242
Query: 239 VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGA 298
           V++G E   AQS++KN GLY ERVG LS+V K ED   RV SQ++ ++R  +S+PP  GA
Sbjct: 243 VSEGFELFCAQSFSKNFGLYNERVGNLSVVGKDEDNVQRVLSQMEKIVRTTWSNPPSQGA 302
Query: 299 SIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT 358
            IVAT L    ++ EW   +K MADR++ MR +L   L + GTPG W+HI  QIGMF+FT
Sbjct: 303 RIVATTLTSPQLFAEWKDNVKTMADRVLLMRSELRSRLESLGTPGTWNHITDQIGMFSFT 362
Query: 359 GLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           GLN +QV +M KE HIY+ + GRI+M GL++K + ++  +IH AVT++
Sbjct: 363 GLNPKQVEYMIKEKHIYLMASGRINMCGLTTKNLDYVAKSIHEAVTKI 410

>pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412

Iteration: 1
 Score =  432 bits (1112), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/408 (50%), Positives = 280/408 (68%), Gaps = 6/408 (1%)
Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           SVF ++ +A    +  +   + +D  P K+NLGVGAYRT++ +P VL VVRK EQ + N+
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63
Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
            S   EYLPI+GL +F   +++L LG DSPA+++ RV  VQ L GTG+LR+GAEFLAR Y
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123
Query: 125 H-----QLTIYIPQPTWGNHPKVFTLAGLS-VKTYRYYDPATRGLNFQGLLEDLRAAPSG 178
           +        +Y+  PTW NH  VFT AG   +++YRY+D   RGL+ QG L DL  AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183
Query: 179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF 238
           +I +LHACAHNPTG DPT EQW+QI  +M+ + L PFFDSAYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243
Query: 239 VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGA 298
           V++G E   AQS++KN GLY ERVG L++V K  D   RV SQ++ ++R  +S+PP  GA
Sbjct: 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGA 303
Query: 299 SIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT 358
            IVA  L D  ++ EWT  +K MADRI+SMR +L   L A  TPG W+HI  QIGMF+FT
Sbjct: 304 RIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFT 363
Query: 359 GLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           GLN +QV ++  + HIY+   GRI+M GL++K + ++  +IH AVT++
Sbjct: 364 GLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTKI 411

>pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412

Iteration: 1
 Score =  430 bits (1105), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/408 (50%), Positives = 279/408 (68%), Gaps = 6/408 (1%)
Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           SVF ++ +A    +  +   + +D  P K+NLGVGAYRT++ +P VL VVRK EQ + N+
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63
Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
            S   EYLPI+GL +F   +++L LG DSPA+++ RV  VQ L GTG+LR+GAEFLAR Y
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123
Query: 125 H-----QLTIYIPQPTWGNHPKVFTLAGLS-VKTYRYYDPATRGLNFQGLLEDLRAAPSG 178
           +        +Y+  PTW NH  VFT AG   +++YRY+D   RGL+ QG L DL  AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183
Query: 179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF 238
           +I +LHACAHNPTG DPT EQW+QI  +M+ + L PFFDSAYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243
Query: 239 VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGA 298
           V++G E   AQS++ N GLY ERVG L++V K  D   RV SQ++ ++R  +S+PP  GA
Sbjct: 244 VSEGFELFCAQSFSXNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGA 303
Query: 299 SIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT 358
            IVA  L D  ++ EWT  +K MADRI+SMR +L   L A  TPG W+HI  QIGMF+FT
Sbjct: 304 RIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFT 363
Query: 359 GLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           GLN +QV ++  + HIY+   GRI+M GL++K + ++  +IH AVT++
Sbjct: 364 GLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTKI 411

>pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate Transaminase 1 (Got1) Length = 422

Iteration: 1
 Score =  427 bits (1097), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 199/396 (50%), Positives = 278/396 (70%), Gaps = 6/396 (1%)
Query: 18  ILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGL 77
           +  +T  + +D  P K+NLGVGAYRT++  P VL VV+K EQ + ND S   EYLPI+GL
Sbjct: 6   VFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGL 65
Query: 78  VDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIP 132
            +F   +++L LG DSPA+K+ RV  VQ L GTG+LR+GA+FLAR Y+        +Y+ 
Sbjct: 66  AEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVS 125
Query: 133 QPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPT 191
            PTW NH  VF+ AG   +++YRY+D   RGL+ QG L DL  AP  +IV+LHACAHNPT
Sbjct: 126 SPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPT 185
Query: 192 GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY 251
           G+DPT EQW+QI  +M+ + L PFFDSAYQGFASG+L+ DA ++R FV++G E   AQS+
Sbjct: 186 GIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSF 245
Query: 252 AKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMY 311
           +KN GLY ERVG L++V K  +   +V SQ++ ++R  +S+PP  GA IVA+ L +  ++
Sbjct: 246 SKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPPAQGARIVASTLSNPELF 305
Query: 312 KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKE 371
           +EWT  +K MADRI++MR +L   L A  TPG W+HI  QIGMF+FTGLN +QV ++  E
Sbjct: 306 EEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLVNE 365
Query: 372 YHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG 407
            HIY+   GRI+++GL++K + ++  +IH AVT++ 
Sbjct: 366 KHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKIA 401

>pdb|1ASL|A Chain A, Crystal Structures Of Escherichia Coli Aspartate Aminotransferase In Two Conformations: Comparison Of An Unliganded Open And Two Liganded Closed Forms Length = 396

Iteration: 1
 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/398 (45%), Positives = 244/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Length = 396

Iteration: 1
 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/398 (45%), Positives = 244/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGFYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1ASF|A Chain A, The Structural Basis For The Reduced Activity Of The Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  360 bits (925), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 244/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD A+QGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAFQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|2AAT|A Chain A, 2.8-Angstroms-Resolution Crystal Structure Of An Active-Site Mutant Of Aspartate Aminotransferase From Escherichia Coli Length = 396

Iteration: 1
 Score =  360 bits (923), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+ N GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSANFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|2Q7W|A Chain A, Structural Studies Reveals The Inactivation Of E. Coli L-Aspartate Aminotransferase (S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta) Via Two Mechanisms At Ph 6.0 Length = 396

Iteration: 1
 Score =  360 bits (923), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+ N GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1AIA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking The Pyridoxal-5'-Phosphate Binding Lysine Residue Length = 396

Iteration: 1
 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+ N GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSHNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|4F5M|A Chain A, Wild-type E. Coli Aspartate Aminotransferase: A Template For The Interconversion Of Substrate Specificity And Activity To Tyrosine Aminotransferase By The Janus Algorithm. Length = 406

Iteration: 1
 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 179/397 (45%), Positives = 242/397 (60%), Gaps = 2/397 (0%)
Query: 7   FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS 66
           F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ +++
Sbjct: 12  FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 71
Query: 67  RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ 126
             K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++   
Sbjct: 72  -TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV 130
Query: 127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC 186
             +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H C
Sbjct: 131 KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGC 190
Query: 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246
            HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E +
Sbjct: 191 CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELI 249
Query: 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306
           VA SY+ N GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL 
Sbjct: 250 VASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILS 309
Query: 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVA 366
           +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV 
Sbjct: 310 NDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVL 369
Query: 367 FMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
            + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 370 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 406

>pdb|1AAM|A Chain A, The Structural Basis For The Altered Substrate Specificity Of The R292d Active Site Mutant Of Aspartate Aminotransferase From E. Coli Length = 396

Iteration: 1
 Score =  358 bits (920), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  I   YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIDANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1ASB|A Chain A, The Structural Basis For The Reduced Activity Of The D223a(D222a) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  358 bits (920), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP F  AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFAFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|3AAT|A Chain A, Activity And Structure Of The Active-Site Mutants R386y And R386f Of Escherichia Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  358 bits (919), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + G +++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGFVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1IX8|A Chain A, Aspartate Aminotransferase Active Site Mutant V39fN194A Length = 396

Iteration: 1
 Score =  358 bits (918), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGFYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C H PTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  357 bits (917), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
             HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 SCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1G4V|A Chain A, Aspartate Aminotransferase Active Site Mutant N194a/y225f Length = 396

Iteration: 1
 Score =  357 bits (917), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 178/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C H PTG+DPTLEQW+ + QL   KG LP FD A+QGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAFQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|2D5Y|A Chain A, Aspartate Aminotransferase Mutant Mc With Isovaleric Acid Length = 396

Iteration: 1
 Score =  357 bits (916), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 180/398 (45%), Positives = 241/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITTAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YSSPP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRVNYSSPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S  IKQ GMF F GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFTIKQNGMFFFGGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRLNVAGMTPDNLAPLCEAIVAVL 396

>pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant Length = 396

Iteration: 1
 Score =  357 bits (916), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 180/398 (45%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y  E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGLYYDETGKIPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   G+G+LRV A+FLA++  
Sbjct: 61  T-TKLYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YSSPP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSSPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  357 bits (916), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
             HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 FCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  357 bits (916), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
             HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 WCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  357 bits (916), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
             HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 YCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|2D61|A Chain A, Aspartate Aminotransferase Mutant Ma With Maleic Acid Length = 396

Iteration: 1
 Score =  357 bits (915), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 180/398 (45%), Positives = 242/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+      D  P K++LG+G Y  E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YSSPP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRVNYSSPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1BQA|A Chain A, Aspartate Aminotransferase P195a Mutant Length = 396

Iteration: 1
 Score =  356 bits (914), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 178/398 (44%), Positives = 242/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HN TG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNATGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+ N GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex Length = 396

Iteration: 1
 Score =  356 bits (914), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+  NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSHPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1ARH|A Chain A, Aspartate Aminotransferase, Y225rR386A MUTANT Length = 396

Iteration: 1
 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/398 (44%), Positives = 242/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD A QGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFARQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + G +++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGAVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1G7W|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR386L Length = 396

Iteration: 1
 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/398 (44%), Positives = 242/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C H PTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + G +++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGLVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1G4X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292L Length = 396

Iteration: 1
 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/398 (44%), Positives = 242/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C H PTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  I   YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAILANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1TOE|A Chain A, Unliganded Structure Of Hexamutant + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  354 bits (909), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 242/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y  E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGLYYDETGKIPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   G+G+LRV A+FLA++  
Sbjct: 61  T-TKLYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+ N GLY ERVGA ++V    +   R  SQ+K  IR  YSSPP HGAS+VATIL
Sbjct: 239 IVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRDNYSSPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|4F5F|A Chain A, Structure Of Aspartate Aminotransferase Conversion To Tyrosine Aminotransferase: Chimera P1. Length = 406

Iteration: 1
 Score =  353 bits (907), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 177/398 (44%), Positives = 241/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
            F  I  AP DPILG+   +  D  P K++LGVG Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 11  TFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVLTSVKKAEQYLLENE 70
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL + GL +F + + +L+ G  S  I D R  T Q   G+G+LRVGA+FLA++  
Sbjct: 71  T-TKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVGADFLAKNTS 129
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  +F  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 130 VKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 189
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP  D AYQGF  G L+ DA+ +R F A   E 
Sbjct: 190 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLIDFAYQGFGRG-LEEDAEGLRAFAAMHKEL 248
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+ N GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 249 IVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 308
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 309 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 368
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GRI++AG++   +  L +AI A +
Sbjct: 369 LRLREEFGVYAVASGRINVAGMTPDNMAPLCEAIVAVL 406

>pdb|3ZZJ|A Chain A, Structure Of An Engineered Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  353 bits (906), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 178/398 (44%), Positives = 241/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGQGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD A QGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAQQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  I   YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIYANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1BQD|A Chain A, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT Length = 396

Iteration: 1
 Score =  353 bits (906), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 177/398 (44%), Positives = 241/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++   +W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNASWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HN TG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNATGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+ N GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|2D66|A Chain A, Aspartate Aminotransferase Mutant Mab Length = 396

Iteration: 1
 Score =  353 bits (905), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 240/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+      D  P K++LG+G Y  E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P W  H  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPGWPTHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YSSPP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRVNYSSPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1G7X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292LR386L Length = 396

Iteration: 1
 Score =  352 bits (904), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 177/398 (44%), Positives = 241/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C H PTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  I   YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAILANYSNPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + G +++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGLVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH GLUTARIC ACID Length = 396

Iteration: 1
 Score =  349 bits (896), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 178/398 (44%), Positives = 238/398 (59%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+      D  P K++LG+G Y  E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VRRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVG  ++V    +   R  SQ+K  IR  YSSPP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGTCTLVAADSETVDRAFSQMKAAIRVNYSSPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S  IKQ GMF F GL  EQV
Sbjct: 299 GNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFTIKQNGMFFFGGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRLNVAGMTPDNLAPLCEAIVAVL 396

>pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase From Trypanosoma Brucei Length = 409

Iteration: 1
 Score =  349 bits (895), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 172/386 (44%), Positives = 243/386 (62%), Gaps = 7/386 (1%)
Query: 16  DPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIV 75
           DPILG+   +  D +  K+NL +G YR +  +P VL  V++A  L  N      +Y P+ 
Sbjct: 26  DPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQA-TLGTN-----MDYAPVT 79
Query: 76  GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT-IYIPQP 134
           G+  F + + KL  G    A++D R+ + Q L GTG+LR+G + L R       IY P  
Sbjct: 80  GIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDV 139
Query: 135 TWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVD 194
            + NH  +F  AG+ +  Y YYDPAT+GLN  G+LE L  AP G+++L+HACAHNPTGVD
Sbjct: 140 GYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVD 199
Query: 195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN 254
           PT + W Q+  +++ +  +PF D AYQGFA+G LD DA   R  V      +VAQS++ N
Sbjct: 200 PTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSXN 259
Query: 255 MGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEW 314
            GLYG R GAL I   + + A R+ SQL L+IRPMY++PP++GA +V++ILKD  +   W
Sbjct: 260 FGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALW 319
Query: 315 TLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHI 374
             ELK M+ RI  +R++L   L A G+  DWSHI +Q+GM  +TGL  EQV  +  EYHI
Sbjct: 320 KKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLTREQVELLRSEYHI 379
Query: 375 YMTSDGRISMAGLSSKTVPHLTDAIH 400
           YMT +GR +++GL+S  V +++ AIH
Sbjct: 380 YMTLNGRAAVSGLNSTNVEYVSQAIH 405

>pdb|1TOJ|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  348 bits (893), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 174/398 (43%), Positives = 239/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I     DPILG+   +  D  P K++LG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITATTADPILGLADLFRADERPGKIDLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   G+G+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+ N  LY ERVGA ++V    +   R   Q+K  IR  YSSPP HGAS+VATIL
Sbjct: 239 IVASSYSXNFALYNERVGACTLVAADSETVDRAFGQMKAAIRANYSSPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|1TOG|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  348 bits (893), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 174/398 (43%), Positives = 239/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I     DPILG+   +  D  P K++LG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITATTADPILGLADLFRADERPGKIDLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   G+G+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+ N  LY ERVGA ++V    +   R   Q+K  IR  YSSPP HGAS+VATIL
Sbjct: 239 IVASSYSXNFALYNERVGACTLVAADSETVDRAFGQMKAAIRDNYSSPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>pdb|4F5H|A Chain A, Intercoversion Of Substrate Specificity: E. Coli Aspatate Aminotransferase To Tyrosine Aminotransferase: Chimera P3. Length = 406

Iteration: 1
 Score =  348 bits (892), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 173/398 (43%), Positives = 239/398 (60%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
            F  I  AP DPILG+   +  D  P K++LG+G Y+ E GK  V+  V+KAEQ L+ ++
Sbjct: 11  TFENITAAPADPILGLADLFRADERPGKVDLGIGVYKDETGKTPVMTSVKKAEQYLLENE 70
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL + GL +F + + +L+ G  S  I D R  T Q   G+G+LRV A+FLA++  
Sbjct: 71  T-TKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTS 129
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  +F  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 130 VKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 189
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG DPTLEQW+ + QL   KG LP  D AYQGF  G L+ DA+ +R F A   E 
Sbjct: 190 CCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDFAYQGFGRG-LEEDAEGLRAFAAMHKEL 248
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+ N GLY ERVGA ++V    +   R  SQ+K  IR  YSSPP HGAS+VATIL
Sbjct: 249 IVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSSPPAHGASVVATIL 308
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  +RQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 309 SNDALRAIWEQELTDMRQRIQRLRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 368
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 369 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 406

>pdb|2D64|A Chain A, Aspartate Aminotransferase Mutant Mabc With Isovaleric Acid Length = 396

Iteration: 1
 Score =  348 bits (892), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 178/398 (44%), Positives = 237/398 (59%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+      D  P K++LG+G Y  E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P W  H  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPGWPTHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YSSPP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRVNYSSPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S  IKQ GMF F GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFTIKQNGMFFFGGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRLNVAGMTPDNLAPLCEAIVAVL 396

>pdb|4F5I|A Chain A, Substrate Specificity Conversion Of E. Coli Pyridoxal-5'-phosphate Dependent Aspartate Aminotransferase To Tyrosine Aminotransferase: Chimera P4. Length = 406

Iteration: 1
 Score =  347 bits (889), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 175/397 (44%), Positives = 238/397 (59%), Gaps = 2/397 (0%)
Query: 7   FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS 66
           F  I  AP DPILG+   +  D  P K++LGVG Y+ E GK  V+  V+KAEQ L+ +++
Sbjct: 12  FENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVMTSVKKAEQYLLENET 71
Query: 67  RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ 126
             K YL I G+ +F + + +L+ G  S  I D R  T Q   G+G+LRV A+FLA++   
Sbjct: 72  -TKTYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSV 130
Query: 127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC 186
             +++  PTW NH  +F  AGL V+ Y YYD     L+F  L+  L  A +G +VL H C
Sbjct: 131 KRVWVSNPTWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGC 190
Query: 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246
            HNPTG+DPTLEQW+ + QL   KG LP  D AYQGF  G L+ DA+ +R F A   E +
Sbjct: 191 CHNPTGIDPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKELI 249
Query: 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306
           VA S + N  LY ERVGA ++V    +   R  SQ+K  IR  YSSPP HGAS+VATIL 
Sbjct: 250 VASSCSXNFSLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSSPPAHGASVVATILS 309
Query: 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVA 366
           +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV 
Sbjct: 310 NDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVL 369
Query: 367 FMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
            + +E+ +Y  + GRI++AG++   +  L +AI A +
Sbjct: 370 RLREEFGVYAVASGRINVAGMTPDNMAPLCEAIVAVL 406

>pdb|4F5J|A Chain A, Rational Design And Directed Evolution For Conversion Of Substrate Specificity From E.coli Aspartate Aminotransferase To Tyrosine Aminotransferase: Mutant P5. Length = 406

Iteration: 1
 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/397 (43%), Positives = 238/397 (59%), Gaps = 2/397 (0%)
Query: 7   FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS 66
           F  I  AP DPILG+   +  D  P K++LGVG Y+ E GK  VL  V+KAEQ L+ +++
Sbjct: 12  FENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVLTSVKKAEQYLLENET 71
Query: 67  RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ 126
             K YL + GL +F + + +L+ G  S  I D R  T Q   G+G+LRV A+FLA++   
Sbjct: 72  -TKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSV 130
Query: 127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC 186
             +++  P+W NH  +F  AGL V+ Y YYD     L+F  L+  L  A +G +VL H C
Sbjct: 131 KRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGC 190
Query: 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246
            HNPTG DPTLEQW+ + QL   KG LP  D AYQGF  G L+ DA+ +R F A   E +
Sbjct: 191 CHNPTGADPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKELI 249
Query: 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306
           VA S + N GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL 
Sbjct: 250 VASSCSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILS 309
Query: 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVA 366
           +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV 
Sbjct: 310 NDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVL 369
Query: 367 FMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
            + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 370 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 406

>pdb|1YOO|A Chain A, Aspartate Aminotransferase Mutant Atb17 With Isovaleric Acid Length = 396

Iteration: 1
 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 177/398 (44%), Positives = 236/398 (59%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+      D  P K++LG+G Y  E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P W  H  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VRRVWVSNPGWPTHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+KN GLY ERVG  ++V    +   R  SQ+K  IR  YSSPP HGAS+VATIL
Sbjct: 239 IVASSYSKNFGLYNERVGTCTLVAADSETVDRAFSQMKAAIRVNYSSPPAHGASVVATIL 298
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S  IKQ GMF F GL  EQV
Sbjct: 299 GNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFTIKQNGMFFFGGLTKEQV 358
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRLNVAGMTPDNLAPLCEAIVAVL 396

>pdb|1YAA|A Chain A, Aspartate Aminotransferase From Saccharomyces Cerevisiae Cytoplasm Length = 412

Iteration: 1
 Score =  345 bits (885), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 172/408 (42%), Positives = 248/408 (60%), Gaps = 7/408 (1%)
Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
           S ++F  I   P D + G+   Y +D    K++LG+GAYR + GKP VL  V+ AE+L+ 
Sbjct: 1   SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIH 60
Query: 63  NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122
           ND S   EYL I GL      +AK+I G  S A++++RV +VQ LSGTG+L + A+F ++
Sbjct: 61  NDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSK 120
Query: 123 HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL 182
            +    +Y+ +PTW NH  +F   GL   TY Y+   T+ L+  G L  ++ AP G+I +
Sbjct: 121 FFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFV 180
Query: 183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV--- 239
           LH+CAHNPTG+DPT EQW QI   + SK  +  FD+AYQGFA+G LD DA +VR+ V   
Sbjct: 181 LHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL 240
Query: 240 ADGGECLVAQSYAKNMGLYGERVG----ALSIVCKTEDVASRVESQLKLVIRPMYSSPPI 295
           +      V QS+AKN G+YGERVG    AL+   + + +   V SQL  +IR   S+PP 
Sbjct: 241 STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPA 300
Query: 296 HGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMF 355
           +GA IVA +L+   + ++W  ++  M+ RI  MR  L D L   GTPG+W HI+ Q GMF
Sbjct: 301 YGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMF 360
Query: 356 TFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
           +FTGL  + V  + + + +Y+ + GR S+AGL+   V ++  AI   V
Sbjct: 361 SFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVV 408

>pdb|4F5G|A Chain A, Rational Design And Directed Evolution Of E. Coli Apartate Aminotransferase To Tyrosine Aminotransferase: Mutant P2. Length = 406

Iteration: 1
 Score =  343 bits (881), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 172/397 (43%), Positives = 237/397 (59%), Gaps = 2/397 (0%)
Query: 7   FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS 66
           F  I  AP DPILG+   +  D  P K++LGVG Y+ E GK  VL  V+KAEQ L+ +++
Sbjct: 12  FENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVLTSVKKAEQYLLENET 71
Query: 67  RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ 126
             K YL + GL +F + + +L+ G  S  I D R  T Q   G+G+LRV A+FLA++   
Sbjct: 72  -TKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSV 130
Query: 127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC 186
             +++  P+W NH  +F  AGL V+ Y YYD     L+F  L+  L  A +G +VL H C
Sbjct: 131 KRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGC 190
Query: 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246
            HNPTG DPTLEQW+ + QL   KG LP  D AYQGF  G L+ DA+ +R F A   E +
Sbjct: 191 CHNPTGADPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKELI 249
Query: 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306
           VA S + N GLY ERVGA ++V    +   R   Q+K  IR  YS+PP HGAS+VATIL 
Sbjct: 250 VASSCSXNFGLYNERVGACTLVAADSETVDRAFGQMKAAIRANYSNPPAHGASVVATILS 309
Query: 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVA 366
           +  +   W  EL  M  RI  MRQ   + L  +G   D+S +IKQ GMF+F+GL  EQV 
Sbjct: 310 NDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFVIKQNGMFSFSGLTKEQVL 369
Query: 367 FMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
            + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 370 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 406

>pdb|4F5K|A Chain A, Substrate Specificity Conversion Of Aspartate Aminotransferase To Tyrosine Aminotransferase By The Janus Algorithm: Chimera P6. Length = 406

Iteration: 1
 Score =  343 bits (879), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 173/398 (43%), Positives = 236/398 (59%), Gaps = 2/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
            F  I  AP DPILG+   +  D  P K++LGVG Y+ E GK  V+  V+KAEQ L+ ++
Sbjct: 11  TFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVMTSVKKAEQYLLENE 70
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL + GL +F + + +L+ G  S  I D R  T Q   G+G+LRV A+FLA++  
Sbjct: 71  T-TKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTS 129
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  PTW NH  +F  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 130 VKRVWVSNPTWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 189
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG DPTLEQW+ + QL   KG LP  D AYQGF  G L+ DA+ +R F A   E 
Sbjct: 190 CCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKEL 248
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA S + N  LY ERVGA ++V    +   R   Q+K  IR  YS+PP HGAS+VATIL
Sbjct: 249 IVASSCSXNFSLYNERVGACTLVAADSETVDRAFGQMKAAIRANYSNPPAHGASVVATIL 308
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 309 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 368
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GRI++AG++   +  L +AI A +
Sbjct: 369 LRLREEFGVYAVASGRINVAGMTPDNMAPLCEAIVAVL 406

>pdb|4H51|A Chain A, Crystal Structure Of A Putative Aspartate Aminotransferase From Leishmania Major Friedlin Length = 420

Iteration: 1
 Score =  338 bits (866), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 177/374 (47%), Positives = 241/374 (64%), Gaps = 8/374 (2%)
Query: 33  KLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGAD 92
           K NL +GAYR E+G+P  L VVRKAEQLL+ D +   EYLPI G   F   + K+I G  
Sbjct: 46  KANLVIGAYRDEQGRPYPLRVVRKAEQLLL-DMNLDYEYLPISGYQPFIDEAVKIIYGN- 103
Query: 93  SPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT--IYIPQPTWGNHPKVFTLAGL-S 149
              ++   +  VQ LSGTG++ +GA+ L R +   T  IY+  PTW NH  V   AG  +
Sbjct: 104 --TVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKN 161
Query: 150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS 209
           + TY YYDP T  LNF+G+ +D+ AAP G++ +LH CAHNPTGVDP+ EQW +I  LM +
Sbjct: 162 ICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLA 221
Query: 210 KGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC 269
           K    FFDSAYQG+ASGSLD DA + R+F   G E L+AQS++ NMGLY ER G LS++ 
Sbjct: 222 KHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSXNMGLYSERAGTLSLLL 281
Query: 270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMR 329
           K +   + V+S +  +IR  Y+ PP HGA +   IL ++ + KEW  EL AMA+RI +MR
Sbjct: 282 KDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMR 341
Query: 330 QQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSS 389
           + ++D L    TPG W H+I QIGMF+F GL+  Q  +  + ++I++T  GR +MAGL+ 
Sbjct: 342 RTVYDELLRLQTPGSWEHVINQIGMFSFLGLSKAQCEY-CQNHNIFITVSGRANMAGLTH 400
Query: 390 KTVPHLTDAIHAAV 403
           +T   L   I+ AV
Sbjct: 401 ETALMLAQTINDAV 414

>pdb|3MEB|A Chain A, Structure Of Cytoplasmic Aspartate Aminotransferase From Giardia Lamblia Length = 448

Iteration: 1
 Score =  334 bits (857), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 182/424 (42%), Positives = 257/424 (60%), Gaps = 20/424 (4%)
Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
           S SVF     +P D IL +TV YN DT+P K+NLGVGAYR E GKP +L  V++AE ++ 
Sbjct: 21  SMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIIS 80
Query: 63  NDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA 121
           +D S+  KEY P+ G   F + +  L+ G DS A ++ R+ + Q LSGTGSL +G EFL 
Sbjct: 81  SDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLH 140
Query: 122 RHYHQLTIYIPQPTWGNH----PKVFTLAGLSVKTYRYY-DPATRGLNFQGLLEDLRAAP 176
               +   Y+P  TW NH     KVF    +  K Y Y        ++F    +D+++AP
Sbjct: 141 LWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAP 200
Query: 177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR 236
             +I L HACAHNP+G+D T  QW+++  +M+ K  + FFDSAYQGFA+GS +ADA +VR
Sbjct: 201 EKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVR 260
Query: 237 MFVADGGECLVAQSYAKNMGLYGERVGALSIVC--------KTEDVASRVESQLKLVIRP 288
           MFV  G E LVAQS++KN GLYGER+G L +V         K + +++ + S + L IR 
Sbjct: 261 MFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRK 320
Query: 289 MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP-----G 343
            +S   IHGA IV  I+ D  + + +   +K M+ RI  MR  L  +L+ R TP     G
Sbjct: 321 TWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKG 380
Query: 344 DWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMT-SDGRISMAGLSSKTVPHLTDAIHAA 402
            W HI+  IGMFTFTGL  E V ++ +++ IY+  + GR+SM GL+     ++ +AIH A
Sbjct: 381 TWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGGRMSMCGLTESNCDYVAEAIHDA 440
Query: 403 VTRM 406
           VT++
Sbjct: 441 VTKL 444

>pdb|4F4E|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Covalently Bound To Pyridoxal Phosphate Length = 420

Iteration: 1
 Score =  330 bits (846), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 182/399 (45%), Positives = 248/399 (62%), Gaps = 2/399 (0%)
Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
           S S+F  +  AP DPILG+  A+N DT P K+NLGVG Y  E+GK  +L  VR AE+  V
Sbjct: 21  SMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARV 80
Query: 63  NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122
            +    + YLPI G+  ++    KL+LG DSP I   RV T Q L GTG+L++GA+FL  
Sbjct: 81  -EAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRT 139
Query: 123 HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL 182
              +  + I  P+W NH  +F +AG  V  Y YYD  T G+NF G+L  L     G IV+
Sbjct: 140 LNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVV 199
Query: 183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG 242
           LHAC HNPTGVD    QW Q+ ++++++ L+PF D AYQGF   S++ADA +VR+F A  
Sbjct: 200 LHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGE-SIEADAAAVRLFAAAN 258
Query: 243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVA 302
               V+ S++ +  LYGERVGALSI+  ++D A+RV SQLK VIR  YS+PP HG +IVA
Sbjct: 259 LNVFVSSSFSXSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVA 318
Query: 303 TILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNS 362
            +L    +   W  EL  M DRI +MR  L + L A G   D+S I  Q GMF+++GL S
Sbjct: 319 AVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTS 378
Query: 363 EQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHA 401
            QV  + +E+ IY  S GRI +A L+++ +  + +AI A
Sbjct: 379 AQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIAA 417

>pdb|4EFF|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Length = 420

Iteration: 1
 Score =  330 bits (846), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 183/399 (45%), Positives = 249/399 (62%), Gaps = 2/399 (0%)
Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
           S S+F  +  AP DPILG+  A+N DT P K+NLGVG Y  E+GK  +L  VR AE+  V
Sbjct: 21  SMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARV 80
Query: 63  NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122
            +    + YLPI G+  ++    KL+LG DSP I   RV T Q L GTG+L++GA+FL  
Sbjct: 81  -EAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRT 139
Query: 123 HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL 182
              +  + I  P+W NH  +F +AG  V  Y YYD  T G+NF G+L  L     G IV+
Sbjct: 140 LNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVV 199
Query: 183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG 242
           LHAC HNPTGVD    QW Q+ ++++++ L+PF D AYQGF   S++ADA +VR+F A  
Sbjct: 200 LHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGE-SIEADAAAVRLFAAAN 258
Query: 243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVA 302
               V+ S++K+  LYGERVGALSI+  ++D A+RV SQLK VIR  YS+PP HG +IVA
Sbjct: 259 LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVA 318
Query: 303 TILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNS 362
            +L    +   W  EL  M DRI +MR  L + L A G   D+S I  Q GMF+++GL S
Sbjct: 319 AVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTS 378
Query: 363 EQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHA 401
            QV  + +E+ IY  S GRI +A L+++ +  + +AI A
Sbjct: 379 AQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIAA 417

>pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli Length = 397

Iteration: 1
 Score =  318 bits (815), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/398 (39%), Positives = 240/398 (60%), Gaps = 1/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F K+     DPIL +   + +D    K+NL +G Y  E+G    L  V +AE  L    
Sbjct: 1   MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
                YLP+ GL  +    A L+ GAD P +K  RV T+Q L G+G+L+VGA+FL R++ 
Sbjct: 61  HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFP 120
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
           +  +++  PTW NH  +F  AG  V TY +YD AT G+ F  LL  L+  P+ +IVLLH 
Sbjct: 121 ESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHP 180
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG D T +QW+ + ++++++ L+PF D AYQGF +G ++ DA ++R   + G   
Sbjct: 181 CCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPA 239
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           LV+ S++K   LYGERVG LS++C+  + A RV  QLK  +R  YSSPP  GA +VA +L
Sbjct: 240 LVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVL 299
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            D  +   W  E++ M  RI++MRQ+L   LS      ++ +++ Q GMF++TGL++ QV
Sbjct: 300 NDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQV 359
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y+ + GR+ +AGL++  V  +  A  A +
Sbjct: 360 DRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397

>pdb|3FSL|A Chain A, Crystal Structure Of Tyrosine Aminotransferase Tripple Mutant (P181q, R183g,A321k) From Escherichia Coli At 2.35 A Resolution Length = 397

Iteration: 1
 Score =  318 bits (814), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/398 (39%), Positives = 240/398 (60%), Gaps = 1/398 (0%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F K+     DPIL +   + +D    K+NL +G Y  E+G    L  V +AE  L    
Sbjct: 1   MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
                YLP+ GL  +    A L+ GAD P +K  RV T+Q L G+G+L+VGA+FL R++ 
Sbjct: 61  HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFP 120
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
           +  +++  PTW NH  +F  AG  V TY +YD AT G+ F  LL  L+   +G+IVLLH 
Sbjct: 121 ESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHP 180
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG D T +QW+ + ++++++ L+PF D AYQGF +G ++ DA ++R   + G   
Sbjct: 181 CCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPA 239
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           LV+ S++K   LYGERVG LS++C+  + A RV  QLK  +R  YSSPP  GA +VA +L
Sbjct: 240 LVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVL 299
Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            D  +   W  E++ M  RI++MRQ+L   LS      ++ +++ Q GMF++TGL++ QV
Sbjct: 300 NDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQV 359
Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y+ + GR+ +AGL++  V  +  A  A +
Sbjct: 360 DRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397

>pdb|3UAK|A Chain A, Crystal Structure Of De Novo Designed Cysteine Esterase Ech14, Northeast Structural Genomics Consortium Target Or54 Length = 406

Iteration: 1
 Score =  307 bits (787), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 168/397 (42%), Positives = 226/397 (56%), Gaps = 2/397 (0%)
Query: 7   FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS 66
           F  I  AP DPI G+   +  D  P K+NLG+  Y  E GK  VL  V+KAEQ L+ +++
Sbjct: 2   FENITAAPADPIYGLADLFRADERPGKINLGLALYYDETGKIPVLTSVKKAEQYLLENET 61
Query: 67  RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ 126
             K YL I G+ +F + + +L+ G  S  I D R  T Q   G G+LRV A+FLA++   
Sbjct: 62  -TKLYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGHGALRVAADFLAKNTSV 120
Query: 127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC 186
             +++  P+      VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL   C
Sbjct: 121 KRVWVYNPSSNCSKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFTGC 180
Query: 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246
            HNPTG+DPTLEQW+ + QL   KG LP F   YQGFA G L+ DA+ +R F A   E +
Sbjct: 181 CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFTFFYQGFARG-LEEDAEGLRAFAAXHKELI 239
Query: 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306
           VA SY+KN GLY E VGA ++V    +   R  SQ K  IR  YSSPP HGAS+VATIL 
Sbjct: 240 VASSYSKNFGLYNESVGACTLVAADSETVDRAFSQXKAAIRDNYSSPPAHGASVVATILS 299
Query: 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVA 366
           +  +   W  EL     RI   RQ   + L  +G   D+S IIKQ G F+F+GL  EQV 
Sbjct: 300 NDALRAIWEQELTDXRQRIQRXRQLFVNTLQEKGANRDFSFIIKQNGXFSFSGLTKEQVL 359
Query: 367 FMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
            + +E+ +Y  + GR+++AG +      L +AI A +
Sbjct: 360 RLREEFGVYAVASGRVNVAGXTPDNXAPLCEAIVAVL 396

>pdb|1AY4|A Chain A, Aromatic Amino Acid Aminotransferase Without Substrate Length = 394

Iteration: 1
 Score =  264 bits (675), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 145/396 (36%), Positives = 213/396 (53%), Gaps = 9/396 (2%)
Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           + G +     D IL +   +  D    K++LGVG Y+   G   ++  V  AEQ ++  +
Sbjct: 1   MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE 60
Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K Y  + G  +F K   +LILG     +K     T+  + GTG+LR   E       
Sbjct: 61  T-TKTYAGLSGEPEFQKAMGELILG---DGLKSETTATLATVGGTGALRQALELARMANP 116
Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
            L +++  PTW NH  +    GL V+TYRY+D  TRG++F+G+  DL AA  G +VLLH 
Sbjct: 117 DLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHG 176
Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG + TL+QW +I  ++   G LP  D AYQGF  G L+ DA   R+  +   E 
Sbjct: 177 CCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEV 235
Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQ--LKLVIRPMYSSPPIHGASIVAT 303
           L+A S +KN G+Y ER G L  +C   D A+R  +Q  +  + R  YS PP HGA IV+T
Sbjct: 236 LIAASCSKNFGIYRERTGCLLALCA--DAATRELAQGAMAFLNRQTYSFPPFHGAKIVST 293
Query: 304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSE 363
           +L    +  +W  EL+A+   ++ +R+QL   L        +  + +  GMF+  G   E
Sbjct: 294 VLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPE 353
Query: 364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAI 399
           QV  + +E+ IYM  D RI++AGL+  T+P L  AI
Sbjct: 354 QVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAI 389

>pdb|3K7Y|A Chain A, Aspartate Aminotransferase Of Plasmodium Falciparum Length = 405

Iteration: 1
 Score =  228 bits (581), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 127/395 (32%), Positives = 214/395 (54%), Gaps = 7/395 (1%)
Query: 16  DPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIV 75
           D IL     + +DT   K+NL +G    ++G   + + V  A++L V +  + K YL   
Sbjct: 14  DNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKL-VTENYKEKPYLLGN 72
Query: 76  GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPT 135
           G  DF+ L+  LI G +S  I+D ++ T+QC+ GTG++ V  EFL +  +  T+Y+  P 
Sbjct: 73  GTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFL-KMLNVETLYVTNPP 131
Query: 136 WGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDP 195
           + NH  +    G ++K   ++D     +N+   L DLR  P+G+ V+L    +NP  V+ 
Sbjct: 132 YINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNI 191
Query: 196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM 255
             + +++I +++  K  +  FD AYQGF   +L+ D   +R F        V QS++KNM
Sbjct: 192 EEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNM 251
Query: 256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWT 315
            LYGER GAL IVCK ++    V + L  ++R  YSSP IH   I+  +L +  +   W 
Sbjct: 252 SLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWI 311
Query: 316 LELKAMADRIISMRQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKE 371
            EL  ++ RI + R   F+ L           DW+   KQ G+F+F  L + ++A   K 
Sbjct: 312 KELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-KIAEHLKT 370
Query: 372 YHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           +HIY+ ++GRI+++G++   V ++ D I  +++++
Sbjct: 371 HHIYIINNGRINVSGITKNNVDYIADKICLSLSQI 405

>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From Veillonella Parvula Length = 418

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 159/391 (40%), Gaps = 32/391 (8%)
Query: 34  LNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADS 93
           +N  +GA   EEG  + L  V K E L ++D   V  Y PI G+ DF   + K   G   
Sbjct: 41  VNGTLGAIHDEEGNLVFLKTV-KEEYLSLSDSEHVG-YAPIAGIPDFLCAAEKECFGNFR 98
Query: 94  PAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL--TIYIPQPTWGNHPKVFTLAGLSVK 151
           P   +  + ++    GTG    G   L  +Y +    +      WG +  + +  G ++ 
Sbjct: 99  P---EGHIRSIATAGGTG----GIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLV 151
Query: 152 TYRYYDPATRGLN--FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS 209
           TY  +D      +  FQ  + +L A  +  +V+ +   +NPTG     + W+ I   ++ 
Sbjct: 152 TYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKD 211
Query: 210 ------KGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL--YGER 261
                   ++   D AY  + SG  D        F     E L    Y+ + G   YG+R
Sbjct: 212 LVAIGRNNVIIGIDVAYLDY-SGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTXYGQR 270
Query: 262 VGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM 321
           VGA   +   E++A       K   R  +S+         A I+ D   +KE+  E    
Sbjct: 271 VGAXIGISDDEEIADEFFEVNKSTSRATWSNICRPAXRTXANIVADPAKFKEYEAERNCY 330
Query: 322 ADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMF-TFTGLNSEQVAFMTKEYHIYMT-- 377
             ++I  R  +F   +A+ G P     +  + G F T    ++  +    K+ HIY+   
Sbjct: 331 Y-QLIRDRADIFKQEAAQVGLP----XLPYRGGFFITIPTDSANAICEELKKEHIYVIAL 385
Query: 378 SDG-RISMAGLSSKTVPHLTDAIHAAVTRMG 407
           ++G RI+  G+       L + I+ A   +G
Sbjct: 386 ANGIRIAACGIPKCQXTGLAEKIYNAXKSLG 416

>pdb|2X5F|A Chain A, Crystal Structure Of The Methicillin-Resistant Staphylococcus Aureus Sar2028, An Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate Dependent Aminotransferase Length = 430

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 129/300 (43%), Gaps = 30/300 (10%)
Query: 128 TIYIPQPTWGNHPKVF-TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC 186
           TI +P+  WGN+  VF T  G +++TY  +D          L+E L++     ++++   
Sbjct: 139 TILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGH-YTTDSLVEALQSYNKDKVIMILNY 197
Query: 187 AHNPTGVDPTLEQWEQIRQLMR---SKG--LLPFFDSAYQGFASGSLDADAQSVRMFVA- 240
            +NPTG  PT ++   I + ++   +KG  ++   D AY G        D  +  +F A 
Sbjct: 198 PNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGL----FYEDVYTQSLFTAL 253
Query: 241 -----DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPI 295
                +    +      K    +G RVG ++     +     +E+++K +IR   SS P+
Sbjct: 254 TNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPL 313
Query: 296 HGASIVATILKDSTMY-KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGM 354
              S V  +LK++  + KE    ++ + +R    ++ ++    A      W       G 
Sbjct: 314 PTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVY----ADQYHSHWQAYDFNSGY 369
Query: 355 FTFTGLNSEQVAFMTK----EYHIYM----TSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           F    ++      + K    +Y I +     +D RI+ + +    +PH+ D+I  A+  +
Sbjct: 370 FMAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDSIAKAIDDL 429

>pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus Prevotii Dsm 20548. Length = 413

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 156/392 (39%), Gaps = 59/392 (15%)
Query: 34  LNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADS 93
           +N  +G    ++GK + L  V   ++L   D+S +  Y PI G  D+ K+    + G   
Sbjct: 40  INAALGTLLDDKGKIIALPSVY--DRLDEXDRSHIASYAPIEGEKDYRKIVIDTLFGPYK 97
Query: 94  PAIKDNRVTTVQCLSGTGSLRV--------GAEFLARHYHQLTIYIPQPTWGNHPKVFTL 145
           P   +  ++ +    GTG++R         G   +   Y+          W  + K+   
Sbjct: 98  P---EGYISAIATPGGTGAIRSAIFSYLDEGDPLICHDYY----------WAPYRKICEE 144
Query: 146 AGLSVKTYRYYDPATRGLNF------QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQ 199
            G + KT+ ++   T    F      + + E +R +   A  L+++  +NPTG   + E+
Sbjct: 145 FGRNFKTFEFF---TDDFAFNIDVYKEAIDEGIRDSDRIA-SLINSPGNNPTGYSLSDEE 200
Query: 200 WEQIRQLM------RSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE------CLV 247
           W+++   +      + K +    D AY  FA    D D Q  R F             +V
Sbjct: 201 WDEVITFLKEKAEDKDKKITLIVDVAYLEFAG---DGDQQ--RKFFEKFSNLPRNLFVVV 255
Query: 248 AQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD 307
           A S +K+   YG R GA   +  ++++    E+ L    R  +S+   H A  +   L+ 
Sbjct: 256 AFSXSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSN-GTHAAQNILIELER 314
Query: 308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTF--TGLNSEQV 365
           +   K +  EL  + + + S      D           + I    G FTF  T    + V
Sbjct: 315 AENKKIYEQELVDLRNXLKSRA----DVFVTAAKENKLTXIPYFGGFFTFIPTDKAFDIV 370
Query: 366 AFMTKE--YHIYMTSDGRISMAGLSSKTVPHL 395
             + KE  + I      R+++ G+  + +P L
Sbjct: 371 KDLEKENIFTIPSAKGIRVAICGVGEEKIPKL 402

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	407
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	0.0
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	0.0
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	0.0
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	0.0
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	0.0
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	0.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	0.0
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	0.0
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	0.0
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	0.0
3rq1_A	418	Aminotransferase class I and II; structural genomi	0.0
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	0.0
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	1e-155
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	1e-05
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	6e-04
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	9e-04
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	9e-04
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	9e-04

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* Length = 401

 Score =  707 bits (1828), Expect = 0.0
 Identities = 216/400 (54%), Positives = 282/400 (70%), Gaps = 2/400 (0%)

Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VLN VRKAE ++   
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61

Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
           +   KEYLPI GL DF + SA+L LG +S A K  R  TVQ +SGTGSLRVGA FL R +
Sbjct: 62  KMD-KEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 120

Query: 125 HQL-TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 183
                +Y+P+P+WGNH  +F  AGL ++ YRYYDP T  L+F G +ED+   P  +I+LL
Sbjct: 121 KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILL 180

Query: 184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243
           HACAHNPTGVDP  EQW+++  +++ + LL +FD AYQGFASG ++ DA ++R F+  G 
Sbjct: 181 HACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240

Query: 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT 303
           + +++QSYAKNMGLYGER GA +++C+  + A RVESQLK++IRPMYS+PP++GA I + 
Sbjct: 241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASL 300

Query: 304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSE 363
           IL    + KEW +E+K MADRIISMR QL   L   G+  +W HI  QIGMF FTGL  E
Sbjct: 301 ILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 360

Query: 364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
           QV  +TKE+ IYMT DGRIS+AG++S  V +L  AIH   
Sbjct: 361 QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Length = 412

 Score =  707 bits (1826), Expect = 0.0
 Identities = 206/410 (50%), Positives = 280/410 (68%), Gaps = 6/410 (1%)

Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
             SVF ++ +A    +  +   + +D  P K+NLGVGAYRT++ +P VL VVRK EQ + 
Sbjct: 2   PPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIA 61

Query: 63  NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122
           N+ S   EYLPI+GL +F   +++L LG DSPA+++ RV  VQ L GTG+LR+GAEFLAR
Sbjct: 62  NNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLAR 121

Query: 123 HYHQL-----TIYIPQPTWGNHPKVFTLAGLS-VKTYRYYDPATRGLNFQGLLEDLRAAP 176
            Y+        +Y+  PTW NH  VFT AG   +++YRY+D   RGL+ QG L DL  AP
Sbjct: 122 WYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP 181

Query: 177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR 236
             +I +LHACAHNPTG DPT EQW+QI  +M+ + L PFFDSAYQGFASG+L+ DA ++R
Sbjct: 182 EFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIR 241

Query: 237 MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIH 296
            FV++G E   AQS++KN GLY ERVG L++V K  D   RV SQ++ ++R  +S+PP  
Sbjct: 242 YFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQ 301

Query: 297 GASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFT 356
           GA IVA  L D  ++ EWT  +K MADRI+SMR +L   L A  TPG W+HI  QIGMF+
Sbjct: 302 GARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFS 361

Query: 357 FTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           FTGLN +QV ++  + HIY+   GRI+M GL++K + ++  +IH AVT++
Sbjct: 362 FTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTKI 411

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Length = 397

 Score =  705 bits (1822), Expect = 0.0
 Identities = 157/398 (39%), Positives = 240/398 (60%), Gaps = 1/398 (0%)

Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F K+     DPIL +   + +D    K+NL +G Y  E+G    L  V +AE  L    
Sbjct: 1   MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP 60

Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
                YLP+ GL  +    A L+ GAD P +K  RV T+Q L G+G+L+VGA+FL R++ 
Sbjct: 61  HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFP 120

Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
           +  +++  PTW NH  +F  AG  V TY +YD AT G+ F  LL  L+   +G+IVLLH 
Sbjct: 121 ESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHP 180

Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG D T +QW+ + ++++++ L+PF D AYQGF +G ++ DA ++R   + G   
Sbjct: 181 CCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPA 239

Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           LV+ S++K   LYGERVG LS++C+  + A RV  QLK  +R  YSSPP  GA +VA +L
Sbjct: 240 LVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVL 299

Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            D  +   W  E++ M  RI++MRQ+L   LS      ++ +++ Q GMF++TGL++ QV
Sbjct: 300 NDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQV 359

Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y+ + GR+ +AGL++  V  +  A  A +
Sbjct: 360 DRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* Length = 420

 Score =  703 bits (1816), Expect = 0.0
 Identities = 182/401 (45%), Positives = 248/401 (61%), Gaps = 2/401 (0%)

Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
           S S+F  +  AP DPILG+  A+N DT P K+NLGVG Y  E+GK  +L  VR AE+  V
Sbjct: 21  SMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARV 80

Query: 63  NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122
                 + YLPI G+  ++    KL+LG DSP I   RV T Q L GTG+L++GA+FL  
Sbjct: 81  EAGLP-RGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRT 139

Query: 123 HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL 182
              +  + I  P+W NH  +F +AG  V  Y YYD  T G+NF G+L  L     G IV+
Sbjct: 140 LNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVV 199

Query: 183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG 242
           LHAC HNPTGVD    QW Q+ ++++++ L+PF D AYQGF    ++ADA +VR+F A  
Sbjct: 200 LHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGES-IEADAAAVRLFAAAN 258

Query: 243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVA 302
               V+ S++K+  LYGERVGALSI+  ++D A+RV SQLK VIR  YS+PP HG +IVA
Sbjct: 259 LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVA 318

Query: 303 TILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNS 362
            +L    +   W  EL  M DRI +MR  L + L A G   D+S I  Q GMF+++GL S
Sbjct: 319 AVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTS 378

Query: 363 EQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
            QV  + +E+ IY  S GRI +A L+++ +  + +AI A +
Sbjct: 379 AQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIAAVL 419

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412

 Score =  700 bits (1809), Expect = 0.0
 Identities = 170/408 (41%), Positives = 245/408 (60%), Gaps = 7/408 (1%)

Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
           S ++F  I   P D + G+   Y +D    K++LG+GAYR + GKP VL  V+ AE+L+ 
Sbjct: 1   SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIH 60

Query: 63  NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122
           ND S   EYL I GL      +AK+I G  S A++++RV +VQ LSGTG+L + A+F ++
Sbjct: 61  NDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSK 120

Query: 123 HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL 182
            +    +Y+ +PTW NH  +F   GL   TY Y+   T+ L+  G L  ++ AP G+I +
Sbjct: 121 FFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFV 180

Query: 183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD- 241
           LH+CAHNPTG+DPT EQW QI   + SK  +  FD+AYQGFA+G LD DA +VR+ V   
Sbjct: 181 LHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL 240

Query: 242 --GGECLVAQSYAKNMGLYGERVGALSIVC----KTEDVASRVESQLKLVIRPMYSSPPI 295
                  V QS+AKN G+YGERVG   +      + + +   V SQL  +IR   S+PP 
Sbjct: 241 STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPA 300

Query: 296 HGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMF 355
           +GA IVA +L+   + ++W  ++  M+ RI  MR  L D L   GTPG+W HI+ Q GMF
Sbjct: 301 YGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMF 360

Query: 356 TFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
           +FTGL  + V  + + + +Y+ + GR S+AGL+   V ++  AI   V
Sbjct: 361 SFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVV 408

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} Length = 409

 Score =  694 bits (1794), Expect = 0.0
 Identities = 172/402 (42%), Positives = 244/402 (60%), Gaps = 7/402 (1%)

Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
                G       DPILG+   +  D +  K+NL +G YR +  +P VL  V++A     
Sbjct: 13  EAQTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQATLGTN 72

Query: 63  NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122
                  +Y P+ G+  F + + KL  G    A++D R+ + Q L GTG+LR+G + L R
Sbjct: 73  ------MDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNR 126

Query: 123 HY-HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIV 181
              +   IY P   + NH  +F  AG+ +  Y YYDPAT+GLN  G+LE L  AP G+++
Sbjct: 127 FVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVI 186

Query: 182 LLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD 241
           L+HACAHNPTGVDPT + W Q+  +++ +  +PF D AYQGFA+G LD DA   R  V  
Sbjct: 187 LVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDM 246

Query: 242 GGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIV 301
               +VAQS++KN GLYG R GAL I   + + A R+ SQL L+IRPMY++PP++GA +V
Sbjct: 247 VPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVV 306

Query: 302 ATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN 361
           ++ILKD  +   W  ELK M+ RI  +R++L   L A G+  DWSHI +Q+GM  +TGL 
Sbjct: 307 SSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLT 366

Query: 362 SEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
            EQV  +  EYHIYMT +GR +++GL+S  V +++ AIH   
Sbjct: 367 REQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAIHNVT 408

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405

 Score =  694 bits (1793), Expect = 0.0
 Identities = 125/406 (30%), Positives = 213/406 (52%), Gaps = 7/406 (1%)

Query: 4   ESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN 63
           + +   +     D IL     + +DT   K+NL +G    ++G   + + V  A++L+  
Sbjct: 2   DKLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTE 61

Query: 64  DQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH 123
           +    K YL   G  DF+ L+  LI G +S  I+D ++ T+QC+ GTG++ V  EFL   
Sbjct: 62  NYKE-KPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKML 120

Query: 124 YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 183
             + T+Y+  P + NH  +    G ++K   ++D     +N+   L DLR  P+G+ V+L
Sbjct: 121 NVE-TLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVIL 179

Query: 184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243
               +NP  V+   + +++I +++  K  +  FD AYQGF   +L+ D   +R F     
Sbjct: 180 QISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNI 239

Query: 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT 303
              V QS++KNM LYGER GAL IVCK ++    V + L  ++R  YSSP IH   I+  
Sbjct: 240 AFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQ 299

Query: 304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR----GTPGDWSHIIKQIGMFTFTG 359
           +L +  +   W  EL  ++ RI + R   F+ L           DW+   KQ G+F+F  
Sbjct: 300 LLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVP 359

Query: 360 LNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 405
           L ++    + K +HIY+ ++GRI+++G++   V ++ D I  ++++
Sbjct: 360 LLAKIAEHL-KTHHIYIINNGRINVSGITKNNVDYIADKICLSLSQ 404

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... Length = 396

 Score =  691 bits (1786), Expect = 0.0
 Identities = 179/398 (44%), Positives = 243/398 (61%), Gaps = 2/398 (0%)

Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ ++
Sbjct: 1   MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60

Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++  
Sbjct: 61  TT-KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS 119

Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
              +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H 
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179

Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E 
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKEL 238

Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           +VA SY+ N GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL
Sbjct: 239 IVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATIL 298

Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
            +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV
Sbjct: 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQV 358

Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
             + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 359 LRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* Length = 394

 Score =  688 bits (1777), Expect = 0.0
 Identities = 142/399 (35%), Positives = 209/399 (52%), Gaps = 6/399 (1%)

Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           + G +     D IL +   +  D    K++LGVG Y+   G   ++  V  AEQ ++  +
Sbjct: 1   MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE 60

Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K Y  + G  +F K   +LILG     +K     T+  + GTG+LR   E       
Sbjct: 61  TT-KTYAGLSGEPEFQKAMGELILG---DGLKSETTATLATVGGTGALRQALELARMANP 116

Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
            L +++  PTW NH  +    GL V+TYRY+D  TRG++F+G+  DL AA  G +VLLH 
Sbjct: 117 DLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHG 176

Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG + TL+QW +I  ++   G LP  D AYQGF  G L+ DA   R+  +   E 
Sbjct: 177 CCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEV 235

Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           L+A S +KN G+Y ER G L  +C         +  +  + R  YS PP HGA IV+T+L
Sbjct: 236 LIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVL 295

Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
               +  +W  EL+A+   ++ +R+QL   L        +  + +  GMF+  G   EQV
Sbjct: 296 TTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQV 355

Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVT 404
             + +E+ IYM  D RI++AGL+  T+P L  AI   V 
Sbjct: 356 KRIKEEFGIYMVGDSRINIAGLNDNTIPILARAII-EVG 393

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} Length = 448

 Score =  677 bits (1749), Expect = 0.0
 Identities = 182/424 (42%), Positives = 257/424 (60%), Gaps = 20/424 (4%)

Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
           S SVF     +P D IL +TV YN DT+P K+NLGVGAYR E GKP +L  V++AE ++ 
Sbjct: 21  SMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIIS 80

Query: 63  NDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA 121
           +D S+  KEY P+ G   F + +  L+ G DS A ++ R+ + Q LSGTGSL +G EFL 
Sbjct: 81  SDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLH 140

Query: 122 RHYHQLTIYIPQPTWGNH----PKVFTLAGLSVKTYRYYDPATR-GLNFQGLLEDLRAAP 176
               +   Y+P  TW NH     KVF    +  K Y Y        ++F    +D+++AP
Sbjct: 141 LWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAP 200

Query: 177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR 236
             +I L HACAHNP+G+D T  QW+++  +M+ K  + FFDSAYQGFA+GS +ADA +VR
Sbjct: 201 EKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVR 260

Query: 237 MFVADGGECLVAQSYAKNMGLYGERVGALSIVC--------KTEDVASRVESQLKLVIRP 288
           MFV  G E LVAQS++KN GLYGER+G L +V         K + +++ + S + L IR 
Sbjct: 261 MFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRK 320

Query: 289 MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP-----G 343
            +S   IHGA IV  I+ D  + + +   +K M+ RI  MR  L  +L+ R TP     G
Sbjct: 321 TWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKG 380

Query: 344 DWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMT-SDGRISMAGLSSKTVPHLTDAIHAA 402
            W HI+  IGMFTFTGL  E V ++ +++ IY+  + GR+SM GL+     ++ +AIH A
Sbjct: 381 TWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGGRMSMCGLTESNCDYVAEAIHDA 440

Query: 403 VTRM 406
           VT++
Sbjct: 441 VTKL 444

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418

 Score =  597 bits (1542), Expect = 0.0
 Identities = 85/425 (20%), Positives = 154/425 (36%), Gaps = 30/425 (7%)

Query: 1   MDSESVFGKIVRAPEDPILGVTVAYN----KDTSPVKLNLGVGAYRTEEGKPLVLNVVRK 56
           M S +      +  +D I            ++     +N  +GA   EEG  + L  V++
Sbjct: 4   MTSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKE 63

Query: 57  AEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVG 116
               L + +     Y PI G+ DF   + K   G   P   +  + ++    GTG +   
Sbjct: 64  EYLSLSDSEH--VGYAPIAGIPDFLCAAEKECFGNFRP---EGHIRSIATAGGTGGIHHL 118

Query: 117 AEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATR--GLNFQGLLEDLRA 174
                       +      WG +  + +  G ++ TY  +D         FQ  + +L A
Sbjct: 119 IHNYTEPGD--EVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAA 176

Query: 175 APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS------KGLLPFFDSAYQGFASGSL 228
             +  +V+ +   +NPTG     + W+ I   ++         ++   D AY  ++    
Sbjct: 177 KQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGE-K 235

Query: 229 DADAQSVRMFVADGGECL--VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI 286
           D        F     E L  V  S +K   +YG+RVGA+  +   E++A       K   
Sbjct: 236 DEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTS 295

Query: 287 RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS 346
           R  +S+        +A I+ D   +KE+  E       I           +  G      
Sbjct: 296 RATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVG----LP 351

Query: 347 HIIKQIGMFTFTGLNSEQ-VAFMTKEYHIY---MTSDGRISMAGLSSKTVPHLTDAIHAA 402
            +  + G F     +S   +    K+ HIY   + +  RI+  G+    +  L + I+ A
Sbjct: 352 MLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQMTGLAEKIYNA 411

Query: 403 VTRMG 407
           +  +G
Sbjct: 412 MKSLG 416

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430

 Score =  445 bits (1146), Expect = e-155
 Identities = 79/419 (18%), Positives = 164/419 (39%), Gaps = 32/419 (7%)

Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           S  G+ +  P   IL    + + +      N  +G    ++GK    + +      L  D
Sbjct: 26  SDLGQNMFYP-KGIL----SQSAEAKSTTYNATIGMATNKDGKM-FASSLDAMFNDLTPD 79

Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
           +     Y P  G+ +   L  + +L  +     DN    +   + T  L +  +      
Sbjct: 80  EI--FPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQD 137

Query: 125 HQLTIYIPQPTWGNHPKVFTLA-GLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 183
              TI +P+  WGN+  VF    G +++TY  +D          L+E L++     ++++
Sbjct: 138 D--TILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGH-YTTDSLVEALQSYNKDKVIMI 194

Query: 184 HACAHNPTGVDPTLEQWEQIRQLMRS-----KGLLPFFDSAYQGFASGSLDAD--AQSVR 236
               +NPTG  PT ++   I + +++       ++   D AY G     +       ++ 
Sbjct: 195 LNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALT 254

Query: 237 MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIH 296
              ++    +      K    +G RVG ++     +     +E+++K +IR   SS P+ 
Sbjct: 255 NLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLP 314

Query: 297 GASIVATILKDSTMY-KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMF 355
             S V  +LK++  + KE    ++ + +R    ++ ++           W       G F
Sbjct: 315 TQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSH----WQAYDFNSGYF 370

Query: 356 TFTGLNSEQVAFMTK----EYHIYM----TSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
               ++      + K    +Y I +     +D RI+ + +    +PH+ D+I  A+  +
Sbjct: 371 MAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDSIAKAIDDL 429

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 50/404 (12%), Positives = 114/404 (28%), Gaps = 124/404 (30%)

Query: 1   MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTE--EGKPLVLNVVRKAE 58
            D  S       + +   + +T    K      L+        E     P  L+++  AE
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AE 335

Query: 59  QLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAE 118
             + +  +    +      V+ +KL+           I+    +++  L      R    
Sbjct: 336 -SIRDGLATWDNWK----HVNCDKLTT---------IIE----SSLNVLE-PAEYR---- 372

Query: 119 FLARHYHQLTIY-----IPQPT----WGNHPKV-----------FTLAGLSVKTYRYYDP 158
              + + +L+++     IP       W +  K            ++L     K      P
Sbjct: 373 ---KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 159 ATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDS 218
                    +  +L+        L     H        ++ +   +       + P+ D 
Sbjct: 430 --------SIYLELKVKLENEYAL-----HRSI-----VDHYNIPKTFDSDDLIPPYLDQ 471

Query: 219 AYQGFASGSLDADAQSVRMFVADGGECLVAQSY-AKNMGLYGERVGALSIVCKTEDVASR 277
            Y  F S             +           +  KN+                  +   
Sbjct: 472 -Y--FYS------------HIG----------HHLKNIEHPER-----------MTLFRM 495

Query: 278 VESQLKLV---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD 334
           V    + +   IR  + S   + +  +   L+    YK +  +     +R+++    + D
Sbjct: 496 VFLDFRFLEQKIR--HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN---AILD 550

Query: 335 ALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTS 378
            L          ++I       +T L   ++A M ++  I+  +
Sbjct: 551 FLPKIEE-----NLICS----KYTDL--LRIALMAEDEAIFEEA 583

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 36/227 (15%), Positives = 75/227 (33%), Gaps = 26/227 (11%)

Query: 129 IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA- 187
           + IP P +  +  V +        Y Y D       +   + +LR A   A         
Sbjct: 184 VMIPIPQYPLYSAVISELDAIQVNY-YLDEEN---CWALNVNELRRAVQEAKDHCDPKVL 239

Query: 188 -----HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ------GFASGSLDADAQSVR 236
                 NPTG   + +  E +      + L    D  YQ           S       + 
Sbjct: 240 CIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMG 299

Query: 237 MFVADGGECLVAQSYAKN-MGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPI 295
              +   E     S +K  MG  G R G + ++    +    ++ QL  ++  +   PP+
Sbjct: 300 PEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPE----IKGQLVKLLS-VRLCPPV 354

Query: 296 HGASIVATILKDST----MYKEWTLELKAMADRIISMRQQLFDALSA 338
            G + +  ++         +++++ E +++   +    +   D  + 
Sbjct: 355 SGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ 401

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 32/225 (14%)

Query: 118 EFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS 177
             +A         I  P +  + +    +G  ++ +           +Q     L A   
Sbjct: 90  FTVASGLKPRRAMIVTPGFAEYGRALAQSGCEIRRW----SLREADGWQLTDAILEALTP 145

Query: 178 GA-IVLLHACA-HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV 235
               + L  C  +NPTG+ P     + I    +S  +    D A+  F            
Sbjct: 146 DLDCLFL--CTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFI-----PHETGF 198

Query: 236 RMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPI 295
              + D     V +S  K   + G R+G L  V   +   +R+        +  +S   +
Sbjct: 199 IPALKDNPHIWVLRSLTKFYAIPGLRLGYL--VNSDDAAMARMRR-----QQMPWS---V 248

Query: 296 HGASIVATI--LKDSTMYKEWTLELKAMADRIISMRQQLFDALSA 338
           +  + +A    L+D + +++ T         +     + + AL  
Sbjct: 249 NALAALAGEVALQD-SAWQQATWHW------LREEGARFYQALCQ 286

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 28/228 (12%)

Query: 129 IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAI-------V 181
           I +P P +  +     L G ++  Y Y + +T    +     D++     A         
Sbjct: 185 ILVPIPQYPLYSASIALHGGALVPY-YLNEST---GWGLETSDVKKQLEDARSRGINVRA 240

Query: 182 LLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ------GFASGSLDADAQSV 235
           L+     NPTG     E    I +  +++GL+   D  YQ           S     +S+
Sbjct: 241 LVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSL 300

Query: 236 RMFVADGGECLVAQSYAKN-MGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPP 294
                D    +  QS +K   G  G+R G   I   +  V  ++          +     
Sbjct: 301 GYGEED-LPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIAS-----VNLCSN 354

Query: 295 IHGASIVATILKD----STMYKEWTLELKAMADRIISMRQQLFDALSA 338
           I G  + + ++         Y  +  E   +   +    + L  A + 
Sbjct: 355 ITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK 402

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 14/107 (13%)

Query: 128 TIYIPQPTWGNHPKVFTLAGLSVKTYR--------YYDPATRGLNFQGLLEDLRAAPSGA 179
           TI +  P++  +     + G + +            Y   T    F     DL       
Sbjct: 144 TIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGF---FPDLSTVGRTD 200

Query: 180 IVLLHACA-HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225
           I+    C+ +NPTG   T EQ  Q+ +  +  G +  +DSAY  + S
Sbjct: 201 IIFF--CSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMS 245

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361

 Score = 40.2 bits (95), Expect = 9e-04
 Identities = 38/217 (17%), Positives = 81/217 (37%), Gaps = 35/217 (16%)

Query: 129 IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--PSGAIVLLHAC 186
           I I  P++  +       G+SV             N     ED+ +      ++++    
Sbjct: 101 ILIIVPSYAEYEINAKKHGVSVVFS----YLDE--NMCIDYEDIISKIDDVDSVII---G 151

Query: 187 A-HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
             +NP G     E++  + +L   K      D A+  F        + S    + +    
Sbjct: 152 NPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFT----GDPSSSFVGEIKNYSCL 207

Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI- 304
            + ++  K   + G R G    +   +++A+++++      +  ++   I+  + +A I 
Sbjct: 208 FIIRAMTKFFAMPGIRFGYG--ITNNKEIAAKIKA-----KQNPWN---INCFAEMAAIN 257

Query: 305 -LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG 340
            LKD T Y E +L        I   R++  + L+  G
Sbjct: 258 CLKD-TNYIEESLLW------IKKERKRFIEELNKIG 287

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	407
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	100.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	100.0
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	100.0
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	100.0
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	100.0
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	100.0
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	100.0
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	100.0
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	100.0
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	100.0
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	100.0
3rq1_A	418	Aminotransferase class I and II; structural genomi	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	100.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
3ele_A	398	Amino transferase; RER070207001803, structural gen	100.0
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	100.0
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	100.0
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	100.0
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	100.0
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	100.0
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	100.0
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	100.0
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	100.0
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	100.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	100.0
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	100.0
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	100.0
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	100.0
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	100.0
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	100.0
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	100.0
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	100.0
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	100.0
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	100.0
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	100.0
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	100.0
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	100.0
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	100.0
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	100.0
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.98
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.97
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.97
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.97
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.97
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.97
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.97
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.97
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.97
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.97
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.97
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.97
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.97
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.97
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.97
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.97
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.97
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.97
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.97
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.97
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.96
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.96
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.96
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.96
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.96
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.96
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.96
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.96
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.96
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.96
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.96
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.96
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.96
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.96
1svv_A	359	Threonine aldolase; structural genomics, structura	99.96
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.96
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.96
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.96
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.96
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.96
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.96
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.96
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.96
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.96
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.96
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.96
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.96
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.96
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.96
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.96
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.96
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.96
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.96
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.95
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.95
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.95
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.95
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.95
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.95
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.95
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.95
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.95
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.95
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.95
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.95
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.95
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.95
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.95
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.95
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.95
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.95
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.95
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.95
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.95
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.95
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.95
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.94
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.94
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.94
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.94
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.94
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.94
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.94
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.93
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.93
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.93
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.93
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.93
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.93
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.93
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.93
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.93
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.93
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.93
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.93
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.93
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.93
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.93
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.92
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.92
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.92
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.92
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.92
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.92
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.91
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.86
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.91
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.91
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.91
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.91
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.91
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.91
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.91
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.91
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.9
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.9
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.9
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.9
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.9
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.9
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.9
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.89
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.89
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.89
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.89
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.88
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.88
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.88
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.88
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.88
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.88
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.88
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.88
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.88
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.87
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.87
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.86
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.85
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.85
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.85
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.85
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.84
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.84
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.82
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.82
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.79
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.76
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.73
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.72
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.7
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.68
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.63
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.61
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.55
3gh5_A	525	HEX1, beta-hexosaminidase; beta-N-acetylhexosamini	84.36
1jak_A	512	Beta-N-acetylhexosaminidase; glycoside hydrolase,	82.27
1now_A	507	Beta-hexosaminidase beta chain; (beta/alpha)8-barr	81.47

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=100.00  E-value=5.4e-60  Score=450.08  Aligned_cols=396  Identities=46%  Similarity=0.766  Sum_probs=342.1

Q ss_pred             cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      +.|.++...|+++|+++...+++++.+ +|||++|.+.|++|+|+..+.|+++...+. +....+.|.|..|+++||+++
T Consensus        19 ~~~~~v~~~p~d~i~~l~~~~~~d~~~-kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~-~~~~~~~Y~p~~G~p~lr~ai   96 (420)
T 4h51_A           19 ERWQKIQAQAPDVIFDLAKRAAAAKGP-KANLVIGAYRDEQGRPYPLRVVRKAEQLLL-DMNLDYEYLPISGYQPFIDEA   96 (420)
T ss_dssp             HHHHTCCCCCCCHHHHHHHHHHHCCSS-CEECCSCCCBCTTSCBCCCHHHHHHHHHHH-HTTCCCCCCCTTCCHHHHHHH
T ss_pred             HHHhCCCCCCCChHHHHHHHHhcCCCC-CEEeecCcccCCCCCCCCCHHHHHHHHHHh-cCCCCCCCCCcCChHHHHHHH
Confidence            467889999999999999999887665 999999999999999988888888877776 345567899999999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh--hcCCCeEEecCCCCCChHHHHhhcCce-eeEEEeecCCCC
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR--HYHQLTIYIPQPTWGNHPKVFTLAGLS-VKTYRYYDPATR  161 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~--~~~gd~Vi~~~p~y~~~~~~~~~~G~~-~~~v~~~~~~~~  161 (407)
                      ++++++....   .+.+..++|.|||+|+..++.++..  +.+||+|++++|+|++|..+++.+|.+ +..++..++.++
T Consensus        97 a~~~~g~~~~---~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~  173 (420)
T 4h51_A           97 VKIIYGNTVE---LENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTV  173 (420)
T ss_dssp             HHHHHC---C---GGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGT
T ss_pred             HHHhcCCCcc---ccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccccc
Confidence            9999775432   3566667799999999888655543  358999999999999999999999997 556666666778


Q ss_pred             CcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc
Q 015435          162 GLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD  241 (407)
Q Consensus       162 ~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~  241 (407)
                      .+|.+.+.+.+...+....++++++||||||.+++.++|++|+++|+++++++|+|++|++|.+++.+.+...+..+.+.
T Consensus       174 ~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~  253 (420)
T 4h51_A          174 SLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARR  253 (420)
T ss_dssp             EECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT
T ss_pred             CCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhh
Confidence            89999999988766666677777999999999999999999999999999999999999999998655555666666677


Q ss_pred             CCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          242 GGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       242 ~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      .+.++++.||||.|+++|+|+||+.+...+.+...++...+....+..+++++..+|.++...+.+..+..+|.+.++.+
T Consensus       254 ~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m  333 (420)
T 4h51_A          254 GIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAM  333 (420)
T ss_dssp             TCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             CceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            78999999999999999999999965566666667777777777788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHH
Q 015435          322 ADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHA  401 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~  401 (407)
                      +++++++|+.+.+.|++.+.+..|.++.+++|+|.|.+++.+++. +|+++||.+.++||||+++++++.+++++++|.+
T Consensus       334 ~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~e~v~-~L~e~~Vy~~~~gRis~Agl~~~ni~~~a~aI~~  412 (420)
T 4h51_A          334 AERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLSKAQCE-YCQNHNIFITVSGRANMAGLTHETALMLAQTIND  412 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCCHHHHH-HHHHTTEECCTTCEEEGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcCHHHHH-HHHhCCEEEcCCCEEEeccCCHHHHHHHHHHHHH
Confidence            999999999999999999877778888899999999999998885 4577999999999999998899999999999999


Q ss_pred             HHHhh
Q 015435          402 AVTRM  406 (407)
Q Consensus       402 ~l~~~  406 (407)
                      ++++.
T Consensus       413 vvr~i  417 (420)
T 4h51_A          413 AVRNV  417 (420)
T ss_dssp             HHC--
T ss_pred             HHHHh
Confidence            99764

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=100.00  E-value=3.9e-59  Score=444.30  Aligned_cols=396  Identities=31%  Similarity=0.551  Sum_probs=335.0

Q ss_pred             cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      ++|.++...++++++++...+++...+++|||++|.+.++++.+.+++.+.++.. +..+....++|++..|.++||+++
T Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~ai   81 (405)
T 3k7y_A            3 KLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLT   81 (405)
T ss_dssp             CGGGGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHH
T ss_pred             chhhcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHH
Confidence            3899999999999999999998877789999999998788886666677777665 521134567899999999999999


Q ss_pred             HHHHhCCCCCCCCCCce--EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435           85 AKLILGADSPAIKDNRV--TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG  162 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i--~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~  162 (407)
                      ++++.+.++..++++++  ++  |+|+++|+.++..++..+.+ |+|++++|+|.+|...++.+|.+++.+|+.++++++
T Consensus        82 a~~~~~~~~~~~~~~~i~i~~--t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~  158 (405)
T 3k7y_A           82 QNLIFGNNSKYIEDKKICTIQ--CIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLID  158 (405)
T ss_dssp             HHHHHCSSCTTTTTTCEEEEE--EEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTE
T ss_pred             HHHHcCCCCccccccceEEEE--cCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCC
Confidence            99998776665666654  67  99999999999655543338 999999999999999999999999999986555689


Q ss_pred             cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      +|++++++.+.+.+.+++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.+.+..++..+....
T Consensus       159 ~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~  238 (405)
T 3k7y_A          159 INYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKN  238 (405)
T ss_dssp             ECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTT
T ss_pred             cCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcC
Confidence            99999999998545567777755669999999999999999999999999999999999999864333445555555556


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      +++++++||||+|+++|+|+||++.+++++++.+++...+....+..+++++.++|.++..++.+..+.+.|.++++.++
T Consensus       239 ~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~  318 (405)
T 3k7y_A          239 IAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLS  318 (405)
T ss_dssp             CCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            78999999999999999999998534567887777777777666666667888999999999998877778888999999


Q ss_pred             HHHHHHHHHHHHHHH----hcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHH
Q 015435          323 DRIISMRQQLFDALS----ARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDA  398 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~  398 (407)
                      ++++++|+++.+.|+    +.|.+..+.+..|++|||.|++++.+++.++ +++||.+.|+||||+++++++++++++++
T Consensus       319 ~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~~~~~~L-~~~gV~v~p~~Ris~a~~~~~~i~~~~~~  397 (405)
T 3k7y_A          319 QRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLAKIAEHL-KTHHIYIINNGRINVSGITKNNVDYIADK  397 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGGGGTTTT-TTTTEECCTTSEEEGGGCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCHHHHHHH-HHCCEeecCCCeEEEeccCHHHHHHHHHH
Confidence            999999999999999    8875555788899999999999877777666 88999999999999998889999999999


Q ss_pred             HHHHHHh
Q 015435          399 IHAAVTR  405 (407)
Q Consensus       399 l~~~l~~  405 (407)
                      |+++++.
T Consensus       398 i~~~~~~  404 (405)
T 3k7y_A          398 ICLSLSQ  404 (405)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998864

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=100.00  E-value=4.1e-54  Score=417.23  Aligned_cols=404  Identities=44%  Similarity=0.754  Sum_probs=341.2

Q ss_pred             ccccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHh-ccccccccCCCCCCcHHHHH
Q 015435            4 ESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV-NDQSRVKEYLPIVGLVDFNK   82 (407)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~g~~~l~~   82 (407)
                      +++|.++...|+++++.+.+.++++..+.+|||++|.|.|..+.+.+.+.+.++...+. ++.....+|.+..|.+++|+
T Consensus        22 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~  101 (448)
T 3meb_A           22 MSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLE  101 (448)
T ss_dssp             CCTTTTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHH
T ss_pred             hhHHhcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHH
Confidence            35899999999999999999999888888999999999776665556666666655553 11234677989999999999


Q ss_pred             HHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCceeeEEEeecC
Q 015435           83 LSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGLSVKTYRYYDP  158 (407)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~~~~~v~~~~~  158 (407)
                      ++++++++.....+++++|++++|+||++++.++..++..+.+||+|++++|+|.++...++    ..|.+++.+|+.++
T Consensus       102 ~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~  181 (448)
T 3meb_A          102 AAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRK  181 (448)
T ss_dssp             HHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCT
T ss_pred             HHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEecccc
Confidence            99999976543333458998888999999999976567778899999999999999999999    99999999998655


Q ss_pred             C-CCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435          159 A-TRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM  237 (407)
Q Consensus       159 ~-~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~  237 (407)
                      + ++.+|++++++.+.+.+....++++++||||||++++.+++++|+++|++||+++|+||+|+++.+++.+.+.+++..
T Consensus       182 ~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  261 (448)
T 3meb_A          182 DGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRM  261 (448)
T ss_dssp             TSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHH
T ss_pred             ccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHH
Confidence            5 689999999999985444456666699999999999999999999999999999999999999998753334466666


Q ss_pred             HHHcCCcEEEEEecCccccccCCCcceeEEee--------cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh
Q 015435          238 FVADGGECLVAQSYAKNMGLYGERVGALSIVC--------KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                      +.....+++++.||||.||++|+|+||+.+++        ++++..+.+...+....+..+.+++.+++.++..++.+..
T Consensus       262 ~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~  341 (448)
T 3meb_A          262 FVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKR  341 (448)
T ss_dssp             HHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHH
T ss_pred             HhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChH
Confidence            66667889999999999999999999985446        6666666777777777777777899999999999999988


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CcccccCCceeEEecCCCHHHHHHhHhhccEEEcCC-CeEE
Q 015435          310 MYKEWTLELKAMADRIISMRQQLFDALSARGTPG-----DWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD-GRIS  383 (407)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g-gRis  383 (407)
                      +.++|.+.+++.+++++++++++.+.|++.+.+.     .+.+..+++++|.|.+++.+++..+++++||.+.|| ||||
T Consensus       342 l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gV~v~~G~gRis  421 (448)
T 3meb_A          342 LLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGGRMS  421 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEEECSGGGEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCCHHHHHHHHHhCCEEEeCCCcEEE
Confidence            8888988899999999999999999999885443     366778899999999999999999999999999995 5999


Q ss_pred             ecCCCCCChhHHHHHHHHHHHhhC
Q 015435          384 MAGLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       384 ~~~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      ++.++++++++++++|++++++++
T Consensus       422 ~a~~~~~~i~~~~~~l~~~l~~~~  445 (448)
T 3meb_A          422 MCGLTESNCDYVAEAIHDAVTKLP  445 (448)
T ss_dssp             GGGCCTTTHHHHHHHHHHHHHHSC
T ss_pred             EecCCHHHHHHHHHHHHHHHHhcc
Confidence            987788999999999999998764

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=100.00  E-value=1.4e-53  Score=410.65  Aligned_cols=395  Identities=44%  Similarity=0.753  Sum_probs=330.8

Q ss_pred             ccccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCcccc-chhHHHHHHHHhccccccccCCCCCCcHHHHH
Q 015435            4 ESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLV-LNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNK   82 (407)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~   82 (407)
                      +++++|+...++++++++...+.++.++++|||++|.+.++++.+.+ +.+.+++.+.+.  ....++|.+..|.+++|+
T Consensus        22 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~--~~~~~~Y~~~~g~~~lr~   99 (420)
T 4f4e_A           22 MSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVE--AGLPRGYLPIDGIAAYDA   99 (420)
T ss_dssp             CCTTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH--TCCCCCCCCTTCCHHHHH
T ss_pred             cCHhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhc--cCCCCCCCCCCCcHHHHH
Confidence            35899999999999999999888777789999999988777874444 345555555554  334578999999999999


Q ss_pred             HHHHHHhCCCCCCCCCC--ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCC
Q 015435           83 LSAKLILGADSPAIKDN--RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPAT  160 (407)
Q Consensus        83 ~~a~~~~~~~~~~~~~~--~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~  160 (407)
                      ++++++.+.....++++  +|++  |+|+++++.++++++..+.+||+|++++|+|.++...++..|.+++.+|+.++++
T Consensus       100 ~ia~~l~~~~~~~~~~~~~~i~~--t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~  177 (420)
T 4f4e_A          100 SVQKLLLGDDSPLIAAGRVVTAQ--ALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKT  177 (420)
T ss_dssp             HHHHHHHCTTCHHHHTTCEEEEE--EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTT
T ss_pred             HHHHHhcCCCccccccCceEEEE--CCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeecccc
Confidence            99999976554333567  8999  9999999999976677788999999999999999999999999999999865667


Q ss_pred             CCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435          161 RGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA  240 (407)
Q Consensus       161 ~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~  240 (407)
                      +++|++.+++.+.+.+....++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ +.+..++..+..
T Consensus       178 ~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~  256 (420)
T 4f4e_A          178 NGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESI-EADAAAVRLFAA  256 (420)
T ss_dssp             TEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCT-TGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCc-chhhHHHHHHHh
Confidence            8999999999997543344455559999999999999999999999999999999999999999863 224556666666


Q ss_pred             cCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHH
Q 015435          241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKA  320 (407)
Q Consensus       241 ~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  320 (407)
                      ..+++++++||||.++++|+|+||++.++++++..+.+...+....+..+.+++.+++.++..++.+..+.+.|.+++++
T Consensus       257 ~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  336 (420)
T 4f4e_A          257 ANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGE  336 (420)
T ss_dssp             TTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            67889999999999999999999984345677766666666666655566678899999999999988777778888999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHH
Q 015435          321 MADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIH  400 (407)
Q Consensus       321 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~  400 (407)
                      ++++++++++++.+.|++.+....+.+..+.+|+|.|++++.+.+..+++++||.+.|++||+++.++++++++++++|+
T Consensus       337 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gI~v~~~~Ris~~~~~~~~i~~~~~~l~  416 (420)
T 4f4e_A          337 MRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIA  416 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCCHHHHHHHHHhCCEEecCCCeEEEecCCHHHHHHHHHHHH
Confidence            99999999999999999874222377788899999999999998999998899999999999998778899999999999


Q ss_pred             HHH
Q 015435          401 AAV  403 (407)
Q Consensus       401 ~~l  403 (407)
                      +++
T Consensus       417 ~~l  419 (420)
T 4f4e_A          417 AVL  419 (420)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=100.00  E-value=1.4e-52  Score=401.22  Aligned_cols=398  Identities=54%  Similarity=0.943  Sum_probs=329.2

Q ss_pred             cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      ++|..+...+++++++..+.++....+++|||++|+|+|..+.|...+.+.+++..+. ......+|.+..|.+++|+++
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~-~~~~~~~Y~~~~g~~~lr~~i   80 (401)
T 7aat_A            2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIA-AKKMDKEYLPIAGLADFTRAS   80 (401)
T ss_dssp             CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHH-HTTCCCCCCCTTCCHHHHHHH
T ss_pred             ChhhcCCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhc-ccccccCCCCCCCCHHHHHHH
Confidence            5889999999999999999898877788999999998666653444455666555554 123466798889999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH-hhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA-RHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~-~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      ++++...++..+++++|++++|+|+++++.+++..+. .+.+||+|++++|+|.++...++..|.+++.+|+.++.++++
T Consensus        81 a~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  160 (401)
T 7aat_A           81 AELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSL  160 (401)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEE
T ss_pred             HHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCcc
Confidence            9999766666666789966559999999999865443 236899999999999999999999999999999865567899


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      |++.+++.+.+.+....++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.+.+..++..+....+
T Consensus       161 d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
T 7aat_A          161 DFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI  240 (401)
T ss_dssp             CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred             CHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCC
Confidence            99999888865323334445599999999999999999999999999999999999999998643223445555556678


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ++++++||||.|+++|+|+||++...++++..+.+...+....+..+.+++..++.++..++.+..+.+.|.+++++.++
T Consensus       241 ~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  320 (401)
T 7aat_A          241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMAD  320 (401)
T ss_dssp             CCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             cEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999984233567666667777777766667788888899998889888777778888999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHHH
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +++++++++.+.|++.+.+..+.+..|++++|.|++++.+.+..+++++||.+.+++||+++..+++++++++++|++++
T Consensus       321 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~~~Ris~~~~~~~~i~~~~~~l~~~~  400 (401)
T 7aat_A          321 RIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCCHHHHHHHHHhCCEeccCCCeEEeccCChhhHHHHHHHHHHHh
Confidence            99999999999999886443477778899999999999998988889899999999999998778888999999999876

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=100.00  E-value=4.7e-52  Score=398.66  Aligned_cols=393  Identities=43%  Similarity=0.752  Sum_probs=315.3

Q ss_pred             cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      ++|+++...+++++++....++++..+++|||++|.|++.   +.++.+.+++.++.   ....++|.+..|.+++|+++
T Consensus        15 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~---~~~~~v~~a~~~a~---~~~~~~y~~~~g~~~lr~~i   88 (409)
T 4eu1_A           15 QTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDD---ADQPFVLECVKQAT---LGTNMDYAPVTGIASFVEEA   88 (409)
T ss_dssp             ------------CHHHHHHHHHHCCCSSCEECCCSSCCCT---TSCCCCCHHHHTCC---CCSCCCCCCTTCCHHHHHHH
T ss_pred             hHhhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECC---CCCEeecHHHHhcC---ccccccCCCCCCcHHHHHHH
Confidence            4789999999999999999898877889999999997443   33444555554442   34567899999999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      ++++.+.....+++++|.+++|.|+++++.++..++.. +.+||+|++++|+|.++...++..|.+++.+|+.+++++++
T Consensus        89 a~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (409)
T 4eu1_A           89 QKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGL  168 (409)
T ss_dssp             HHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEE
T ss_pred             HHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcC
Confidence            99997655443346788544499999999987654443 35889999999999999999999999999999865667899


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      |++++++.+.+.+.+..++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++...+..++..+....+
T Consensus       169 d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~  248 (409)
T 4eu1_A          169 NLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVP  248 (409)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSS
T ss_pred             cHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCC
Confidence            99999999975444556666699999999999999999999999999999999999999998642222345555555567


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ++++++||||.+|++|+|+||+.+++++++..+.+...+....+..+.+++.++|.++..++++..+.++|.+..++.++
T Consensus       249 ~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  328 (409)
T 4eu1_A          249 NLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSS  328 (409)
T ss_dssp             CCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             cEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            88999999999999999999963337778777777777777666666788899999999999988777788888899999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHHH
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +++++++++.+.|++.|.+..+.+..+.+++|.|.+++.+.+..+++++||.+.|++||+++..+++++++++++|++++
T Consensus       329 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~p~~Ri~~~~~~~~~i~~~~~~l~~~l  408 (409)
T 4eu1_A          329 RIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLTREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAIHNVT  408 (409)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcceecCCceEEEEeCCCHHHHHHHHHcCCEEEcCCCEEEEEecCHhhHHHHHHHHHHHh
Confidence            99999999999999987544467778899999999999888889998899999999999999888899999999999876

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=100.00  E-value=1.2e-50  Score=387.28  Aligned_cols=393  Identities=38%  Similarity=0.709  Sum_probs=323.2

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCcccc-chhHHHHHH-HHhccccccccCCCCCCcHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLV-LNVVRKAEQ-LLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      +|.++...+++.++.+...+..+..+++|||+.|.+.++++.+.+ +.+.+++.+ .+.  ....++|.+..|..++|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~--~~~~~~y~~~~g~~~lr~~   78 (397)
T 3fsl_A            1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQ--PHGASLYLPMEGLNCYRHA   78 (397)
T ss_dssp             CCTTCCCCCCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHS--CCCCCCCCCTTCCHHHHHH
T ss_pred             CcccCCCCCCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccC--ccccccCCCCCchHHHHHH
Confidence            467888889999999998888877889999999987777773333 455555555 443  3345679888999999999


Q ss_pred             HHHHHhCCCCCCCCCC--ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCC
Q 015435           84 SAKLILGADSPAIKDN--RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATR  161 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~--~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~  161 (407)
                      +++++.......++++  +|++  |+|+++++.++++++..+.+||+|+++.|+|.++...++..|.+++.+++.+++++
T Consensus        79 la~~~~~~~~~~~~~~~~~i~~--t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~  156 (397)
T 3fsl_A           79 IAPLLFGADHPVLKQQRVATIQ--TLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATN  156 (397)
T ss_dssp             HHHHHHCTTCHHHHTTCEEEEE--ESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTT
T ss_pred             HHHHHhcCCcccccccceEEEE--cCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCC
Confidence            9999966554333567  8999  99999999999766666889999999999999999999999999999998555678


Q ss_pred             CcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc
Q 015435          162 GLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD  241 (407)
Q Consensus       162 ~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~  241 (407)
                      ++|++++++.+.+.+....++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ +.+..++..+...
T Consensus       157 ~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~  235 (397)
T 3fsl_A          157 GVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASA  235 (397)
T ss_dssp             EECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCT-TGGGHHHHHHHHT
T ss_pred             cCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCc-ccccHHHHHHHhc
Confidence            999999999997543344555559999999999999999999999999999999999999999862 2244566555566


Q ss_pred             CCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          242 GGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       242 ~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      .+++++++||||.++++|+|+||++..+++++..+++...+....+..+.+++.+++.++..++.+..+.+.|.+++++.
T Consensus       236 ~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  315 (397)
T 3fsl_A          236 GLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEM  315 (397)
T ss_dssp             TCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            78999999999999999999999942235666666666655555455556778899999999999887776777888999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHH
Q 015435          322 ADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHA  401 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~  401 (407)
                      +++++++++++.+.|++.+....+.+..+.+++|.|++++.+.+..+++++||.+.||+||+++..+++++++++++|++
T Consensus       316 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~Ris~~~~~~~~i~~~~~~l~~  395 (397)
T 3fsl_A          316 RTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAA  395 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTCEEEGGGCCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCCHHHHHHHHHhCCEEECCCCeEEEEecCHhhHHHHHHHHHh
Confidence            99999999999999998742212677788899999999999888888999999999999999987788999999999987


Q ss_pred             HH
Q 015435          402 AV  403 (407)
Q Consensus       402 ~l  403 (407)
                      ++
T Consensus       396 ~l  397 (397)
T 3fsl_A          396 VM  397 (397)
T ss_dssp             HC
T ss_pred             hC
Confidence            63

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=100.00  E-value=1.9e-49  Score=380.97  Aligned_cols=401  Identities=51%  Similarity=0.890  Sum_probs=321.9

Q ss_pred             cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      ++|+++...++++++++.+.+.+.+++++|||+.|.+.++++.+.+++.+.+++.....+....++|.+..|..++|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~l   83 (412)
T 1ajs_A            4 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA   83 (412)
T ss_dssp             CTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred             chhhhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHH
Confidence            48999999999999999888876667899999999987667655555555555554431222456798889999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCC-----CeEEecCCCCCChHHHHhhcCce-eeEEEeecC
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ-----LTIYIPQPTWGNHPKVFTLAGLS-VKTYRYYDP  158 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~g-----d~Vi~~~p~y~~~~~~~~~~G~~-~~~v~~~~~  158 (407)
                      ++++.+.++..+++++|++++|+|++++++++.+++..+.+|     |+|+++.|+|.++...++..|.+ ++.+++..+
T Consensus        84 a~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~  163 (412)
T 1ajs_A           84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT  163 (412)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET
T ss_pred             HHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecC
Confidence            999966554444568887766999999999997666667799     99999999999999999999999 999998544


Q ss_pred             CCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH
Q 015435          159 ATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF  238 (407)
Q Consensus       159 ~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~  238 (407)
                      +++++|++++++.+.+.+.+..++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.+....++..+
T Consensus       164 ~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~  243 (412)
T 1ajs_A          164 EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF  243 (412)
T ss_dssp             TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred             CCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHH
Confidence            56789999999998743223344444999999999999999999999999999999999999999875310123344444


Q ss_pred             HHcCCcEEEEEecCccccccCCCcceeEEee--cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435          239 VADGGECLVAQSYAKNMGLYGERVGALSIVC--KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTL  316 (407)
Q Consensus       239 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  316 (407)
                      ....++++++.|+||.++++|+|+||+  ++  ++++..+.+...+....+..+.+++.++|.++..++++..+.+.|.+
T Consensus       244 ~~~~~~~i~~~s~sK~~~~~G~riG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  321 (412)
T 1ajs_A          244 VSEGFELFCAQSFSKNFGLYNERVGNL--TVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTG  321 (412)
T ss_dssp             HHTTCCEEEEEECTTTSCCGGGCEEEE--EEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHH
T ss_pred             hccCCcEEEEEecccccCCCCcceEEE--EEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHH
Confidence            445678999999999999889999999  56  36665556666665544444445788999999999988755555667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHH
Q 015435          317 ELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLT  396 (407)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~  396 (407)
                      ++++.+++++++++++.+.|++.+.+..+.+..+.+++|.|++++.+.+..+++++||.+.++.||+++..+++++++++
T Consensus       322 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~~~i~~~~  401 (412)
T 1ajs_A          322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVA  401 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCCHHHHHHHHHhCCEEecCCcEEEeeeCCHHHHHHHH
Confidence            78899999999999999999987633236767788999999999887888888889999999889999965899999999


Q ss_pred             HHHHHHHHhhC
Q 015435          397 DAIHAAVTRMG  407 (407)
Q Consensus       397 ~~l~~~l~~~~  407 (407)
                      ++|++++++++
T Consensus       402 ~~l~~~l~~~~  412 (412)
T 1ajs_A          402 TSIHEAVTKIQ  412 (412)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhcC
Confidence            99999998764

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=100.00  E-value=1.9e-49  Score=380.96  Aligned_cols=401  Identities=42%  Similarity=0.757  Sum_probs=320.6

Q ss_pred             cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHH-HhccccccccCCCCCCcHHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQL-LVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      +||+++...++++++...+.+.+.+++++|||+.|.++|+++.+.+++.+.+++.. .. .....++|.+..|.+++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~-~~~~~~~y~~~~g~~~lr~~   81 (412)
T 1yaa_A            3 TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHN-DSSYNHEYLGITGLPSLTSN   81 (412)
T ss_dssp             TTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHT-CTTCCCCCCCTTCCHHHHHH
T ss_pred             chhccCcccCCCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhc-CcccccCCCCCCCcHHHHHH
Confidence            38999999999999999988876667889999999988877755555656555555 43 22345679888999999999


Q ss_pred             HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      +++++.+..+..+++++|++++|+|++++++++.+++..+.+||+|++++|+|.++...++..|.+++.++..+++++++
T Consensus        82 ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~  161 (412)
T 1yaa_A           82 AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSL  161 (412)
T ss_dssp             HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEE
T ss_pred             HHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCcc
Confidence            99999665554445688887779999999999866666677999999999999999999999999999999844456889


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      |++++++.+.+.+.+.+++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++...+..++..+....+
T Consensus       162 d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
T 1yaa_A          162 DLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLS  241 (412)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTT
T ss_pred             CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCC
Confidence            99999999974333455666699999999999999999999999999999999999999987531012234434433344


Q ss_pred             ---cEEEEEecCccccccCCCcceeEEee----cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435          244 ---ECLVAQSYAKNMGLYGERVGALSIVC----KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTL  316 (407)
Q Consensus       244 ---~~i~~~s~sK~~~~~G~r~G~~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  316 (407)
                         ++++++|+||.++++|+|+||+++++    ++++..+.+...+....+..+.+++.++|.++..++++..+.++|.+
T Consensus       242 ~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  321 (412)
T 1yaa_A          242 TVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHK  321 (412)
T ss_dssp             TTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHH
Confidence               79999999999998899999992115    24553334566565544445557788999999999988766666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHH
Q 015435          317 ELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLT  396 (407)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~  396 (407)
                      ++++.+++++++++++.+.|++.+.+..+.+..+.+++|.|.+++.+.+..+++++||.+.+..||+++..+++++++++
T Consensus       322 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~~~  401 (412)
T 1yaa_A          322 DMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVA  401 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCCHHHHHHHHHhCCEEeccCcEEEEccCCHhHHHHHH
Confidence            88999999999999999999987622125667788999999999888788888889999999779999866899999999


Q ss_pred             HHHHHHHHhh
Q 015435          397 DAIHAAVTRM  406 (407)
Q Consensus       397 ~~l~~~l~~~  406 (407)
                      ++|+++++.+
T Consensus       402 ~~l~~~~~~~  411 (412)
T 1yaa_A          402 KAIDEVVRFY  411 (412)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999998753

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=100.00  E-value=1.7e-48  Score=372.29  Aligned_cols=394  Identities=45%  Similarity=0.790  Sum_probs=296.5

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      +|.++...++++++.....+....++++|||+.|.+.++++.+.+++.+.+++.... .....++|.+..|..++|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~-~~~~~~~y~~~~g~~~lr~~la   79 (396)
T 2q7w_A            1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLL-ENETTKNYLGIDGIPEFGRCTQ   79 (396)
T ss_dssp             -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHH-HHCCCCCCCCTTCCHHHHHHHH
T ss_pred             CccccccCCCchHHHHHHHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhc-CcccccCCCCCCCCHHHHHHHH
Confidence            477888889999988887776655678999999997666663444444444444432 1224567988899999999999


Q ss_pred             HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435           86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF  165 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  165 (407)
                      +++.+..+..+++++|+++.|+|++++++++++++..+.+||+|+++.|+|.++...++..|.+++.++...++++++|+
T Consensus        80 ~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  159 (396)
T 2q7w_A           80 ELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDF  159 (396)
T ss_dssp             HHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECH
T ss_pred             HHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCH
Confidence            99955443324467887545999999999997666556799999999999999999999999999999985335678999


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +++++.+.+.+....++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ .....++..+....+++
T Consensus       160 ~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~  238 (396)
T 2q7w_A          160 DALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL-EEDAEGLRAFAAMHKEL  238 (396)
T ss_dssp             HHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCH-HHHTHHHHHHHHHCSCE
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCc-cchhHHHHHHHhcCCcE
Confidence            99999997432234445559999999999999999999999999999999999999998752 01223444444446789


Q ss_pred             EEEEecCccccccCCCcceeEEee--cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVC--KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ++++|+||.++++|+|+||+  ++  ++++..+.+...+....+..+.+++.+++.++..++++..+.+.|.+++++.++
T Consensus       239 i~~~s~sK~~~~~G~riG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~  316 (396)
T 2q7w_A          239 IVASSYSXNFGLYNERVGAC--TLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQ  316 (396)
T ss_dssp             EEEEECTTTTTCGGGCCEEE--EEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-C
T ss_pred             EEEEeccccccccccccceE--EEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence            99999999999999999999  44  466655566666655444445566889999999999886555566677888999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHHH
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +++++++++.+.|++.+.+..+.+..+.+++|.|++++.+.+..+++++||.+.++.||+++..+++++++++++|++++
T Consensus       317 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~e~i~~~~~~l~~~l  396 (396)
T 2q7w_A          317 RIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCCHHHHHHHHHhcCeeecCCceEEEeecCHHHHHHHHHHHHhcC
Confidence            99999999999999886321256667889999999998888888888899999998899998668899999999998763

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=100.00  E-value=2.1e-47  Score=364.56  Aligned_cols=390  Identities=36%  Similarity=0.662  Sum_probs=309.4

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      +|+++...+++++++..+.+.+..++++|||+.|.+.++++.+.+++.+.+++.... .....++|.+..|..++|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~-~~~~~~~y~~~~g~~~lr~~la   79 (394)
T 2ay1_A            1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRML-ETETTKTYAGLSGEPEFQKAMG   79 (394)
T ss_dssp             CGGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHH-HHCCCCCCCCSSCCHHHHHHHH
T ss_pred             CCccCccCCCccHHHHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhc-CCcccCCCCCCCCcHHHHHHHH
Confidence            478888999999999988887766788999999998666653445555555554443 1224667988899999999999


Q ss_pred             HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435           86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF  165 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  165 (407)
                      +++.+..   +++++|++++|+|++++++++++.+..+.+||+|+++.|+|.++...++..|.+++.++...++++++|+
T Consensus        80 ~~~~~~~---~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  156 (394)
T 2ay1_A           80 ELILGDG---LKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDF  156 (394)
T ss_dssp             HHHHGGG---CCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECH
T ss_pred             HHHhCCC---CCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCH
Confidence            9985431   2457887656999999999997665545599999999999999999999999999999985435678999


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +++++.+.+.+....++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. .+..++..+....+++
T Consensus       157 ~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~  235 (394)
T 2ay1_A          157 EGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASRIPEV  235 (394)
T ss_dssp             HHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHHCSSE
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcc-cchHHHHHHhhcCCCE
Confidence            999999984322345555599999999999999999999999999999999999999987520 0223444444445679


Q ss_pred             EEEEecCccccccCCCcceeEEee--cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVC--KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ++++|+||.++++|+|+||+  ++  +++++.+.+...+....+..+.+++.+++.++..++++..+.+.|.++.++.++
T Consensus       236 i~~~s~sK~~~~~G~riG~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~  313 (394)
T 2ay1_A          236 LIAASCSKNFGIYRERTGCL--LALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRS  313 (394)
T ss_dssp             EEEEECTTTTTCGGGCEEEE--EEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCcCcCCccceE--EEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            99999999999999999999  45  567766666665554444444566888999999999877555566678889999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHH
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~  402 (407)
                      +++++++++.+.|++.+.+..+.+..+.+|+|.|++++.+.+.++++++||.+.++.||+++..+++++++++++|+++
T Consensus       314 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          314 GMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCCHHHHHHHHHhCCEEecCCCeEEeecCCHhhHHHHHHHHHHc
Confidence            9999999999999887522125666778899999999887788888889999999889999866899999999999875

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=100.00  E-value=4.3e-46  Score=358.23  Aligned_cols=385  Identities=21%  Similarity=0.276  Sum_probs=298.9

Q ss_pred             cccccCCCCCchhhhhHhhhhc----CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYNKD----TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNK   82 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~   82 (407)
                      .++....++++++.....+++.    .+.++|||+.|.|.++++.+.+++.+.+++..+.  .....+|.+..|.+++|+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~--~~~~~~y~~~~g~~~lr~   87 (418)
T 3rq1_A           10 KHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLS--DSEHVGYAPIAGIPDFLC   87 (418)
T ss_dssp             TTTTTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCC--HHHHHSCCCTTCCHHHHH
T ss_pred             hhcCCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhc--ccccCCCCCCCChHHHHH
Confidence            3455566777888887666522    2468999999998777765556666666665543  223567988899999999


Q ss_pred             HHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435           83 LSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG  162 (407)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~  162 (407)
                      ++++++.+..+.. .+++|++  |+|+++++.+++  ...+.+||+|++++|+|.++...++..|.+++.+|+. +.+++
T Consensus        88 ~ia~~~~~~~~~~-~~~~i~~--t~g~~~al~~~~--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~  161 (418)
T 3rq1_A           88 AAEKECFGNFRPE-GHIRSIA--TAGGTGGIHHLI--HNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLF-DEHNN  161 (418)
T ss_dssp             HHHHHHHGGGCCS-SEEEEEE--ESHHHHHHHHHH--HHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSB-CTTSS
T ss_pred             HHHHHHhcccCcc-ccccEEE--CCchHHHHHHHH--HHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeee-CCCCC
Confidence            9999995543221 1238999  999999999995  4447899999999999999999999999999999985 33478


Q ss_pred             cChhhHHHHHHcC--CCCcEEEEecCC-CCCCCCCCCHHHHHHHHHHHH------HcCceeeeccccccccCCCCCchhH
Q 015435          163 LNFQGLLEDLRAA--PSGAIVLLHACA-HNPTGVDPTLEQWEQIRQLMR------SKGLLPFFDSAYQGFASGSLDADAQ  233 (407)
Q Consensus       163 ~d~~~l~~~i~~~--~~~~~v~i~~~p-~NPtG~~~~~~~l~~i~~~~~------~~~~~li~D~~y~~~~~~~~~~~~~  233 (407)
                      +|++++++.+.+.  ++++.++++++| |||||.+++.+++++|+++|+      +||+++|+||+|.++.+.+.  ...
T Consensus       162 ~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~--~~~  239 (418)
T 3rq1_A          162 FNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKD--EVR  239 (418)
T ss_dssp             BCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHH--HHH
T ss_pred             cCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChH--HHH
Confidence            9999999998731  145545555889 999999999999999999999      89999999999999987531  111


Q ss_pred             HHHH-HHHcCCc--EEEEEecCccccccCCCcceeEEee--cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435          234 SVRM-FVADGGE--CLVAQSYAKNMGLYGERVGALSIVC--KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       234 ~~~~-~~~~~~~--~i~~~s~sK~~~~~G~r~G~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                      ++.. +....++  +++++||||.++++|+|+||+  ++  +++++.+.+...........+.+++.+++.++..++++.
T Consensus       240 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  317 (418)
T 3rq1_A          240 AFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAM--IGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADP  317 (418)
T ss_dssp             GGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEE--EEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEE--EEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCH
Confidence            1111 1111234  588999999999999999999  45  367766665554333333334468889999999999988


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-CHHHHHHhHhhccEEEcCCC---eEEe
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG---RISM  384 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg---Ris~  384 (407)
                      ...+.|.+..++++++++++++++.+.|++.|    +.+..+.+++|.|+++ +.+.+.+.|.++||.+.||+   ||++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~iRis~  393 (418)
T 3rq1_A          318 AKFKEYEAERNCYYQLIRDRADIFKQEAAQVG----LPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAA  393 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCCCCCCSSSEEEEECTTHHHHHHHHHHTTEECEECSSEEEEEG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCCceEEEEcCCCCHHHHHHHHHhCCEEEecCCCCeEEEE
Confidence            76667777788889999999999999999887    7778889999999866 55555567788999999986   9998


Q ss_pred             cCCCCCChhHHHHHHHHHHHhhC
Q 015435          385 AGLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       385 ~~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      +.++++++++++++|++++++++
T Consensus       394 ~~~~~~~i~~~~~~l~~~l~~~~  416 (418)
T 3rq1_A          394 CGIPKCQMTGLAEKIYNAMKSLG  416 (418)
T ss_dssp             GGSCHHHHTTHHHHHHHHHHHTT
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHh
Confidence            86689999999999999998764

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=7.9e-46  Score=352.50  Aligned_cols=365  Identities=15%  Similarity=0.149  Sum_probs=282.0

Q ss_pred             ccccccCCCCCchhhhhHhhhh--cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNK--DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      +.+++...+++++..+.+.+.+  ..++++|+|+.|.+   +. +.++.+.+++.+.+.  . ...+|.+..|.+++|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~~g~~~lr~~   76 (385)
T 1b5p_A            4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEP---DF-DTPEHVKEAARRALA--Q-GKTKYAPPAGIPELREA   76 (385)
T ss_dssp             CCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSC---SS-CCCHHHHHHHHHHHH--T-TCCSCCCTTCCHHHHHH
T ss_pred             hhhHHhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCC---CC-CCCHHHHHHHHHHHh--c-CCCCCCCCCCCHHHHHH
Confidence            4566777777777766655442  23578999999975   33 445556666666654  2 24568888899999999


Q ss_pred             HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      +++++...++..+++++|++  |+|+++++.+++  ...+.+||+|++++|+|..+...++..|.+++.++++.++++.+
T Consensus        77 ia~~~~~~~g~~~~~~~i~~--t~g~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~  152 (385)
T 1b5p_A           77 LAEKFRRENGLSVTPEETIV--TVGGSQALFNLF--QAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVP  152 (385)
T ss_dssp             HHHHHHHTTCCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC
T ss_pred             HHHHHHHHhCCCCChHHEEE--cCChHHHHHHHH--HHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCC
Confidence            99999665565567789999  999999999995  33478999999999999999999999999999999953246789


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      |++++++++.  ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|..+.+++ .  ..++..+ .. +
T Consensus       153 d~~~l~~~l~--~~~~~v~~-~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~--~~~~~~~-~~-~  224 (385)
T 1b5p_A          153 DPERVRRAIT--PRTKALVV-NSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-E--HFSPGRV-AP-E  224 (385)
T ss_dssp             CHHHHHTTCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-C--CCCGGGT-CT-T
T ss_pred             CHHHHHHhcC--CCCEEEEE-eCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-C--CCCHHHc-CC-C
Confidence            9999999886  45566665 8999999999999999999999999999999999999988754 1  1122222 12 6


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ++++++||||.++++|+|+||+  +++ ++    +.+.+.......+.+++.+.|.++..+++....   ..+++++.++
T Consensus       225 ~~i~~~s~SK~~~~~G~RiG~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~  294 (385)
T 1b5p_A          225 HTLTVNGAAKAFAMTGWRIGYA--CGP-KE----VIKAMASVSRQSTTSPDTIAQWATLEALTNQEA---SRAFVEMARE  294 (385)
T ss_dssp             TEEEEEESTTTTTCGGGCCEEE--ECC-HH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHH---HHHHHHHHHH
T ss_pred             CEEEEEechhhcCCcccceEEE--EeC-HH----HHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCc---chHHHHHHHH
Confidence            7999999999999999999999  565 44    444455444445567888999998888875100   0145778889


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CHHHHHHhHhhccEEEcCC------C--eEEecCCCCC
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSD------G--RISMAGLSSK  390 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~g------g--Ris~~~~~~e  390 (407)
                      +++++++++.+.|++.+    +.+..+.+++|.|+.+     +.+.+.+.|.++||.+.||      +  ||+++. +++
T Consensus       295 ~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~~-~~~  369 (385)
T 1b5p_A          295 AYRRRRDLLLEGLTALG----LKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYAT-SEE  369 (385)
T ss_dssp             HHHHHHHHHHHHHHHHT----CCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCS-CHH
T ss_pred             HHHHHHHHHHHHHHHCC----CeecCCCeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccCCCCeEEEEecC-CHH
Confidence            99999999999999886    6777888998888754     4554444444789999886      2  999984 888


Q ss_pred             ChhHHHHHHHHHHH
Q 015435          391 TVPHLTDAIHAAVT  404 (407)
Q Consensus       391 ~i~~~~~~l~~~l~  404 (407)
                      ++++++++|+++++
T Consensus       370 ~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          370 NLRKALERFARVLG  383 (385)
T ss_dssp             HHHHHHHHGGGGC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988765

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=8.8e-45  Score=349.88  Aligned_cols=375  Identities=13%  Similarity=0.143  Sum_probs=278.0

Q ss_pred             ccccccCCCCCchhhhhHhhhhcC--CCCeeeeeeeeeecCCC-ccccchhHHHHHHHHhccccccccCCCCCCcHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDT--SPVKLNLGVGAYRTEEG-KPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNK   82 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~   82 (407)
                      +|..+...+.++|+++...++...  ++++|||+.|.+. +.| .+.++.+.+++.+.+.  .....+|.+..|..++|+
T Consensus        27 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~~-~~g~~~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~lr~  103 (427)
T 3dyd_A           27 RPSDMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDPT-VFGNLPTDPEVTQAMKDALD--SGKYNGYAPSIGFLSSRE  103 (427)
T ss_dssp             CCCC----------------CCCCCTTSCCEECCCSCTT-TTSSSCCCHHHHHHHHHHHH--HCCSSSCCCTTCCHHHHH
T ss_pred             chhhHhhcccchHHHHHHHHhhcccCCCCEEeCCCcCCC-ccCCCCCCHHHHHHHHHHHh--cCcCCCCCCCCCcHHHHH
Confidence            467777788888999888777433  4678999999862 222 2445555555555554  333567988899999999


Q ss_pred             HHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435           83 LSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG  162 (407)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~  162 (407)
                      ++++++.+. +..+++++|++  |+|+++++.+++..+  +.+||+|+++.|+|.++...++..|.+++.+++.++.++.
T Consensus       104 ~la~~~~~~-~~~~~~~~v~~--t~g~t~al~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~  178 (427)
T 3dyd_A          104 EIASYYHCP-EAPLEAKDVIL--TSGCSQAIDLCLAVL--ANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWE  178 (427)
T ss_dssp             HHHHHHCBT-TBCCCGGGEEE--ESSHHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTE
T ss_pred             HHHHHHhhc-CCCCChHHEEE--ecCcHHHHHHHHHHh--cCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCC
Confidence            999999543 55566789999  999999999996444  6799999999999999999999999999999996556678


Q ss_pred             cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      +|++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||+++|+|++|+++.+++..  ..++..+ ...
T Consensus       179 ~d~~~l~~~l~--~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~--~~~~~~~-~~~  252 (427)
T 3dyd_A          179 IDLKQLEYLID--EKTACLIV-NNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCK--YEPLATL-STD  252 (427)
T ss_dssp             ECHHHHHSSCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCC--CCCGGGG-CSS
T ss_pred             CCHHHHHHHhc--cCCCEEEE-ECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCc--CccHHHh-CCC
Confidence            99999999886  45566665 899999999999999999999999999999999999999876521  1122212 224


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecCh--hhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTE--DVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKA  320 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  320 (407)
                      ..+++++|+||.|+++|+|+||+  +++++  .+.+.+.+.+...... .++++.++|.++..+++...     .+++++
T Consensus       253 ~~vi~~~S~sK~~~~~G~riG~~--~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~-----~~~~~~  324 (427)
T 3dyd_A          253 VPILSCGGLAKRWLVPGWRLGWI--LIHDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTP-----GEFYHN  324 (427)
T ss_dssp             CCEEEEEESTTTSSCGGGCCEEE--EEECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSC-----HHHHHH
T ss_pred             CcEEEEeeccccCCCcCcceEEE--EecCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcC-----HHHHHH
Confidence            56899999999999999999999  56653  1112344444433322 45888999999998887421     145778


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC----------HHHHHHhHhhccEEEcCCC--------eE
Q 015435          321 MADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN----------SEQVAFMTKEYHIYMTSDG--------RI  382 (407)
Q Consensus       321 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~~~~gg--------Ri  382 (407)
                      .+++++++++++.+.|++.+.   +.+..|.+++|.|++++          .+++.++++++||.+.||.        ||
T Consensus       325 ~~~~~~~~~~~l~~~L~~~~g---~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRi  401 (427)
T 3dyd_A          325 TLSFLKSNADLCYGALAAIPG---LRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRV  401 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTT---EEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCC---ceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEE
Confidence            889999999999999998732   77778889999887443          3456677778999999873        99


Q ss_pred             EecCCCCCChhHHHHHHHHHHHhh
Q 015435          383 SMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       383 s~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +++. +++++++++++|+++++++
T Consensus       402 s~~~-~~e~i~~~l~~l~~~l~~~  424 (427)
T 3dyd_A          402 VITV-PEVMMLEACSRIQEFCEQH  424 (427)
T ss_dssp             ESCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             EECC-CHHHHHHHHHHHHHHHHHh
Confidence            9984 8899999999999998764

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=2.2e-44  Score=346.70  Aligned_cols=377  Identities=15%  Similarity=0.150  Sum_probs=290.4

Q ss_pred             CCcccccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHH
Q 015435            1 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDF   80 (407)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l   80 (407)
                      |.+..+..++...+++.+........   ++++|||+.|.+   +. +.++.+.+++.+.+. ......+|++..|..++
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~g~~---~~-~~~~~v~~a~~~~~~-~~~~~~~y~~~~g~~~l   72 (422)
T 3fvs_A            1 MAKQLQARRLDGIDYNPWVEFVKLAS---EHDVVNLGQGFP---DF-PPPDFAVEAFQHAVS-GDFMLNQYTKTFGYPPL   72 (422)
T ss_dssp             ---CCSCGGGTTCCCCHHHHHHHHHH---TSCCEECCCSSC---SS-CCCHHHHHHHHHHHH-SCGGGGSCCCTTCCHHH
T ss_pred             CcchhHHHHhhccCccHHHHHHHHhh---cCCceEeCCCCC---CC-CCCHHHHHHHHHHHh-CCCccCCCCCCCCCHHH
Confidence            44445678888888887777765443   368999999985   33 556666666666665 22124679888899999


Q ss_pred             HHHHHHHHhCCCCCCCCC-CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec--
Q 015435           81 NKLSAKLILGADSPAIKD-NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD--  157 (407)
Q Consensus        81 ~~~~a~~~~~~~~~~~~~-~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~--  157 (407)
                      |+++++++....+..+++ ++|++  |+|+++++.+++..  .+.+||+|+++.|+|.++...++..|.+++.+++..  
T Consensus        73 r~~la~~~~~~~g~~~~~~~~i~~--~~g~~~a~~~~~~~--~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~  148 (422)
T 3fvs_A           73 TKILASFFGELLGQEIDPLRNVLV--TVGGYGALFTAFQA--LVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGP  148 (422)
T ss_dssp             HHHHHHHHHHHHTCCCCHHHHEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCC
T ss_pred             HHHHHHHHHHhhCCCCCCCCcEEE--ECChHHHHHHHHHH--HcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEeccccc
Confidence            999999995544555556 68999  99999999999543  378999999999999999999999999999999853  


Q ss_pred             --------CCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          158 --------PATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       158 --------~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                              ..++.+|++++++.+.  ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..
T Consensus       149 ~~~G~~~~~~~~~~d~~~l~~~~~--~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~  225 (422)
T 3fvs_A          149 IQNGELGSSSNWQLDPMELAGKFT--SRTKALVL-NTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQ  225 (422)
T ss_dssp             CCSSSCCBGGGSBCCHHHHHTTCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred             ccccccccccCCCCCHHHHHhhcC--CCceEEEE-CCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCC
Confidence                    1235689999999886  55666666 899999999999999999999999999999999999999886531


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                        ..++..+....++++++.|+||.+|++|+|+||+  +++     +.+.+.+........++++.+.+.++..++++..
T Consensus       226 --~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  296 (422)
T 3fvs_A          226 --HISIASLPGMWERTLTIGSAGKTFSATGWKVGWV--LGP-----DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQ  296 (422)
T ss_dssp             --CCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEE--ECC-----HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             --CCChhhcccccCcEEEEecchhccCCccceEEEE--EeC-----HHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhcc
Confidence              1222222223467899999999999999999999  565     4455555555554556788899998888886411


Q ss_pred             hH-HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCH------------------HHHHHhHh
Q 015435          310 MY-KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNS------------------EQVAFMTK  370 (407)
Q Consensus       310 ~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~l~  370 (407)
                      .. ..+.+++++.+++++++++++.+.|++.+    +.+..+.+++|.|+.+..                  +++..+++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  372 (422)
T 3fvs_A          297 LLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG----LKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIK  372 (422)
T ss_dssp             HTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTT----CEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHcC----CeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHH
Confidence            00 01124577888999999999999999887    777788899999986532                  45667788


Q ss_pred             hccEEEcCC-------------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          371 EYHIYMTSD-------------G--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       371 ~~gi~~~~g-------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++||.+.||             +  ||+++. +++++++++++|+++++++
T Consensus       373 ~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~l  422 (422)
T 3fvs_A          373 NKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKWKVEL  422 (422)
T ss_dssp             HHCEECEEGGGGSCHHHHTTSCSEEEEECCC-CHHHHHHHHHHHHHHHHCC
T ss_pred             hcCEEEeCcHHhcCCcCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHhhC
Confidence            899999873             2  999997 9999999999999998763

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-44  Score=345.17  Aligned_cols=342  Identities=14%  Similarity=0.138  Sum_probs=267.6

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      .+.++|||+.|.+   +. +.|+.+.+++.+.+. . ....+|++..|..++|+++++++....+..+++++|++  |+|
T Consensus        55 ~~~~~i~l~~g~~---~~-~~~~~v~~a~~~~~~-~-~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~--t~G  126 (447)
T 3b46_A           55 QGRELINLGQGFF---SY-SPPQFAIKEAQKALD-I-PMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTV--TTG  126 (447)
T ss_dssp             TTSCCEECCCCSC---SS-CCCHHHHHHHHHHTT-S-GGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEE--ESH
T ss_pred             cCCCeEEccCCCC---CC-CCCHHHHHHHHHHHh-C-cCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--eCC
Confidence            4578999999985   33 445566666666654 2 13567988889999999999999555555566789999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCC----------CCCcChhhHHHHHHcCCCC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA----------TRGLNFQGLLEDLRAAPSG  178 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~----------~~~~d~~~l~~~i~~~~~~  178 (407)
                      +++++.++++  ..+.+||+|++++|+|..+...++..|.+++.+++..+.          ++.+|++++++.+.  +++
T Consensus       127 ~~~al~~~~~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~~~  202 (447)
T 3b46_A          127 ANEGILSCLM--GLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT--SKT  202 (447)
T ss_dssp             HHHHHHHHHH--HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC--TTE
T ss_pred             HHHHHHHHHH--HHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc--cCC
Confidence            9999999953  347899999999999999999999999999999985331          46799999999886  556


Q ss_pred             cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH-HHcCCcEEEEEecCccccc
Q 015435          179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF-VADGGECLVAQSYAKNMGL  257 (407)
Q Consensus       179 ~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~~  257 (407)
                      +++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++..   .++..+ ....++++++.|+||.+++
T Consensus       203 ~~v~l-~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~---~~~~~~~~~~~~~~i~i~S~sK~~~~  278 (447)
T 3b46_A          203 KAVII-NTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSF---TRIATLSPEIGQLTLTVGSAGKSFAA  278 (447)
T ss_dssp             EEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC---CCGGGSCHHHHTTEEEEEEHHHHTTC
T ss_pred             eEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCC---cCHHHcCCCCCCcEEEEecCchhcCC
Confidence            77666 799999999999999999999999999999999999999886411   111111 1224679999999999999


Q ss_pred             cCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          258 YGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALS  337 (407)
Q Consensus       258 ~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  337 (407)
                      +|+|+||+  ++.++++.+    .+........++++.+.|.++..+|+...    +.+++++.+++++++++++.+.|+
T Consensus       279 ~G~riG~~--~~~~~~l~~----~l~~~~~~~~~~~~~~~~~a~~~aL~~~~----~~~~~~~~~~~~~~~~~~l~~~L~  348 (447)
T 3b46_A          279 TGWRIGWV--LSLNAELLS----YAAKAHTRICFASPSPLQEACANSINDAL----KIGYFEKMRQEYINKFKIFTSIFD  348 (447)
T ss_dssp             TTSCCEEE--ECSCHHHHH----HHHHHHHHHTSSCCHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhEEE--EeCCHHHHH----HHHHHHhhccCCCChHHHHHHHHHHhCCc----chHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999  563555444    44444334455788888988888887531    124577888999999999999999


Q ss_pred             hcCCCCCcccccCCceeEEecCCC-------------------H-HHHHHhHhhccEEEcCC-------------C--eE
Q 015435          338 ARGTPGDWSHIIKQIGMFTFTGLN-------------------S-EQVAFMTKEYHIYMTSD-------------G--RI  382 (407)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~l~~~gi~~~~g-------------g--Ri  382 (407)
                      +.|    +.+..+.+|+|.|+.+.                   . +++.++++++||.+.||             +  ||
T Consensus       349 ~~g----~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRl  424 (447)
T 3b46_A          349 ELG----LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRF  424 (447)
T ss_dssp             HHT----CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEE
T ss_pred             HCC----CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEE
Confidence            887    67777889999987542                   2 33456667789999874             2  99


Q ss_pred             EecCCCCCChhHHHHHHHH
Q 015435          383 SMAGLSSKTVPHLTDAIHA  401 (407)
Q Consensus       383 s~~~~~~e~i~~~~~~l~~  401 (407)
                      +++. +++++++++++|++
T Consensus       425 s~~~-~~e~l~~~~~~l~~  442 (447)
T 3b46_A          425 AVCK-DDAYLENAVERLKL  442 (447)
T ss_dssp             ECCS-CHHHHHHHHHHGGG
T ss_pred             EEeC-CHHHHHHHHHHHHH
Confidence            9986 88999999999976

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=100.00  E-value=6.2e-42  Score=335.80  Aligned_cols=342  Identities=15%  Similarity=0.187  Sum_probs=269.4

Q ss_pred             ccchhHHHHHHHHhcccc-ccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh-cCC
Q 015435           49 LVLNVVRKAEQLLVNDQS-RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH-YHQ  126 (407)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~-~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~-~~g  126 (407)
                      .|.++++++.+.+..... ....|.+..|..++|+++++++....+..+++++|++  |+|+++++.+++..  .+ .+|
T Consensus       107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~~--l~~~~g  182 (500)
T 3tcm_A          107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFL--TDGASPGVHLMMQL--LIRNEK  182 (500)
T ss_dssp             SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEE--ESSSHHHHHHHHHH--HCCSTT
T ss_pred             CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEE--cCCHHHHHHHHHHH--HcCCCC
Confidence            456677777777752212 5678999999999999999999554455566799999  99999999999533  35 699


Q ss_pred             CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC----CCCcEEEEecCCCCCCCCCCCHHHHHH
Q 015435          127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA----PSGAIVLLHACAHNPTGVDPTLEQWEQ  202 (407)
Q Consensus       127 d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~----~~~~~v~i~~~p~NPtG~~~~~~~l~~  202 (407)
                      |+|+++.|+|..+...++..|.+++.++++++.++.+|++++++++.+.    .+++++++ ++||||||.+++.+++++
T Consensus       183 d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl-~~p~NPtG~~~s~~~l~~  261 (500)
T 3tcm_A          183 DGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVV-INPGNPTGQVLAEENQYD  261 (500)
T ss_dssp             EEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEE-ESSCTTTCCCCCHHHHHH
T ss_pred             CEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEE-ECCCCCCcccCCHHHHHH
Confidence            9999999999999999999999999999965556799999999999741    13556666 799999999999999999


Q ss_pred             HHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-H-----cCCcEEEEEecCccc-cccCCCcceeEEeecChhhH
Q 015435          203 IRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-A-----DGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVA  275 (407)
Q Consensus       203 i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~-----~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~  275 (407)
                      |+++|++||+++|+||+|+.+.+++. ....++..+. .     ...++++++||||.| |++|+|+||+.....++++.
T Consensus       262 i~~la~~~~~~li~Deay~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~  340 (500)
T 3tcm_A          262 IVKFCKNEGLVLLADEVYQENIYVDN-KKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVR  340 (500)
T ss_dssp             HHHHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHH
T ss_pred             HHHHHHHcCCEEEEecCccccccCCC-CCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHH
Confidence            99999999999999999999888532 1222332221 1     123579999999999 89999999994222366666


Q ss_pred             HHHHHHHhhhhhcccCCCChhHHHHHHHHhcC----hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC
Q 015435          276 SRVESQLKLVIRPMYSSPPIHGASIVATILKD----STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ  351 (407)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  351 (407)
                      +.+..    .. ....+++.++|.++..++..    ...++.|.+..++++++++++++++.+.|++.+.   +.+..++
T Consensus       341 ~~l~~----~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g---~~~~~~~  412 (500)
T 3tcm_A          341 EQIYK----IA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEG---ITCNEAE  412 (500)
T ss_dssp             HHHHH----HH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---EECCCCC
T ss_pred             HHHHH----HH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cEEecCC
Confidence            65544    22 23458889999999988874    2355567778889999999999999999998832   8888999


Q ss_pred             ceeEEecC--CCH-------------H--HHHHhHhhccEEEcCC-------C----eEEecCCCCCChhHHHHHHHHHH
Q 015435          352 IGMFTFTG--LNS-------------E--QVAFMTKEYHIYMTSD-------G----RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       352 ~~~~~~~~--~~~-------------~--~~~~~l~~~gi~~~~g-------g----Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +++|.|++  +..             +  .+.++|+++||.+.||       |    ||+++ .+++++++++++|++++
T Consensus       413 g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~i~~l~~~~  491 (500)
T 3tcm_A          413 GAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKIPAVISRFTVFH  491 (500)
T ss_dssp             BTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCTTTHHHHHHHHHHHH
T ss_pred             eEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHH
Confidence            99999953  322             1  2457888899999975       2    99999 59999999999999988


Q ss_pred             Hh
Q 015435          404 TR  405 (407)
Q Consensus       404 ~~  405 (407)
                      ++
T Consensus       492 ~~  493 (500)
T 3tcm_A          492 EA  493 (500)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=5.6e-43  Score=338.87  Aligned_cols=366  Identities=11%  Similarity=0.148  Sum_probs=275.3

Q ss_pred             ccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccc-hhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435            8 GKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVL-NVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK   86 (407)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~   86 (407)
                      .|.....++++........   ++++|||+.|.|   +....|. .+.+++.+.+........+|++..|..++|+++++
T Consensus        56 ~~~~~~~~s~~~~~~~~~~---~~~~i~l~~g~p---~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~  129 (448)
T 3aow_A           56 KKALEMRASEVRELLKLVE---TSDIISLAGGLP---NPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMK  129 (448)
T ss_dssp             HHHHHCCCCHHHHHHHHHH---TSSSEECCCCCC---CGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHhcc---CCCcEeCCCCCC---CchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHH
Confidence            4444555566655554332   367999999986   2212244 44444445544111124679888899999999999


Q ss_pred             HHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChh
Q 015435           87 LILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQ  166 (407)
Q Consensus        87 ~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  166 (407)
                      ++....+.. ++++|++  |+|+++++.++++.+  +.+||+|+++.|+|.++...++..|.+++.+|++ +  .++|++
T Consensus       130 ~~~~~~g~~-~~~~v~~--t~G~~~al~~~~~~l--~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~--~g~d~~  201 (448)
T 3aow_A          130 WLGKRYGIS-QDNDIMI--TSGSQQALDLIGRVF--LNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLD-D--EGMKVE  201 (448)
T ss_dssp             HHHHHHCCC-TTSEEEE--ESSHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEE-T--TEECHH
T ss_pred             HHHHhcCcC-ChhhEEE--eCcHHHHHHHHHHHH--cCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccC-C--CCCCHH
Confidence            984333333 5689999  999999999995444  7899999999999999999999999999999984 3  359999


Q ss_pred             hHHHHHH----cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          167 GLLEDLR----AAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       167 ~l~~~i~----~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      ++++.+.    +.+++++++++++|+||||.+++.+++++|+++|++||++||+||+|..+.+++..  ..++..+ +..
T Consensus       202 ~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~--~~~~~~~-~~~  278 (448)
T 3aow_A          202 ILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNP--EKKIKAL-DNE  278 (448)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCC--CCCTGGG-CTT
T ss_pred             HHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCC--CcCHHhc-CCC
Confidence            9999987    42355676667999999999999999999999999999999999999999875421  1122122 224


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      ++++++.||||.++ +|+|+||+  +++ ++    +.+.+.........+++.++|.++..+|++.    .|.+++++.+
T Consensus       279 ~~vi~~~S~SK~~~-~GlriG~v--~~~-~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~----~~~~~~~~~~  346 (448)
T 3aow_A          279 GRVIYLGTFSKILA-PGFRIGWM--VGD-PG----IIRKMEIAKQSTDLCTNVFGQVVAWRYVDGG----YLEKHIPEIR  346 (448)
T ss_dssp             SCEEEEEESTTTTC-GGGCCEEE--EEC-HH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHTT----HHHHHHHHHH
T ss_pred             CCEEEEccchhhcc-ccccEEEE--EeC-HH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC----CHHHHHHHHH
Confidence            57899999999999 99999999  566 44    4444444444444577899999999988764    2346788889


Q ss_pred             HHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEecCC----CHHHH-HHhHhhccEEEcCC----------C--eEEe
Q 015435          323 DRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTGL----NSEQV-AFMTKEYHIYMTSD----------G--RISM  384 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~l~~~gi~~~~g----------g--Ris~  384 (407)
                      ++++++++++.+.|++. +.  .+.+..|.+|+|.|+.+    +.+.+ ..+++ +||.+.||          +  ||++
T Consensus       347 ~~~~~~~~~l~~~L~~~~~~--g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~-~gV~v~pg~~f~~~~~~~~~iRls~  423 (448)
T 3aow_A          347 KFYKPRRDAMLEALEEFMPE--GVKWTKPEGGMFIWVTLPDGIDSKKMLERAIK-KGVAYVPGEAFYAHRDVKNTMRLNF  423 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHCCT--TCEECCCSBSSEEEEECSTTCCHHHHHHHHHH-TTEECEEGGGGSTTCCCCSEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhCCC--CeEEeCCCccEEEEEEcCCCCCHHHHHHHHHH-CCcEEEcchhhcCCCCCCCEEEEEe
Confidence            99999999999999874 20  16777788899999855    44444 45555 59999874          1  9999


Q ss_pred             cCCCCCChhHHHHHHHHHHHh
Q 015435          385 AGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       385 ~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +..+++++++++++|++++++
T Consensus       424 ~~~~~e~i~~~~~~L~~~l~~  444 (448)
T 3aow_A          424 TYVDEDKIMEGIKRLAETIKE  444 (448)
T ss_dssp             SSSCTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence            865789999999999999875

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=1.1e-42  Score=331.43  Aligned_cols=357  Identities=17%  Similarity=0.164  Sum_probs=273.9

Q ss_pred             cccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435            9 KIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK   86 (407)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~   86 (407)
                      ++...+++++..+.+.+.  ..+++++|||+.|.+   .. +.++.+.+++.+.+.   .....|.+..|..++|+++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~~~g~~~lr~~ia~   79 (391)
T 3h14_A            7 SRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQP---GT-GAPRGAVEALAKSLE---TDALGYTVALGLPALRQRIAR   79 (391)
T ss_dssp             STTCCCCCTTHHHHHHHHHHHHTTCCCEECCCSSC---SS-CSCHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             hHhhcCcchHHHHHHHHHHHHhcCCCeEEccCCCC---CC-CCCHHHHHHHHHHHh---cCCCCCCCCCChHHHHHHHHH
Confidence            788888777777665544  245689999999985   22 445556666666664   234678888899999999999


Q ss_pred             HHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChh
Q 015435           87 LILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQ  166 (407)
Q Consensus        87 ~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  166 (407)
                      ++...++..+++++|++  |+|+++++.+++  ...+.+||+|+++.|+|..+...++..|.+++.++++.+.++.+|++
T Consensus        80 ~~~~~~g~~~~~~~v~~--t~g~~~al~~~~--~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  155 (391)
T 3h14_A           80 LYGEWYGVDLDPGRVVI--TPGSSGGFLLAF--TALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPA  155 (391)
T ss_dssp             HHHHHHCCCCCGGGEEE--ESSHHHHHHHHH--HHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHH
T ss_pred             HHHHHhCCCCCHHHEEE--ecChHHHHHHHH--HHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHH
Confidence            99544444456789999  999999999995  33478999999999999999999999999999999954445678999


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      ++++.     +++++++ ++|+||||++++.+++++|+++|++||+++|+||+|.++.+++.....      ....++++
T Consensus       156 ~l~~~-----~~~~v~i-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~------~~~~~~~i  223 (391)
T 3h14_A          156 DFAGL-----DLAGLMV-ASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTA------LELTDECY  223 (391)
T ss_dssp             HHTTS-----CCSEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCG------GGTCSSSE
T ss_pred             HHHhc-----CCeEEEE-CCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcCh------hhcCCCEE
Confidence            88764     4677777 799999999999999999999999999999999999999886532111      12257889


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                      +++|+||.+|++|+|+||+  +++ +++.+    .+.........+++.+++.++..+++..       +.+++.+++++
T Consensus       224 ~~~s~sK~~g~~G~r~G~~--~~~-~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~  289 (391)
T 3h14_A          224 VINSFSKYFSMTGWRVGWM--VVP-EDQVR----VVERIAQNMFICAPHASQVAALAALDCD-------AELQANLDVYK  289 (391)
T ss_dssp             EEEESSSTTCCTTSCCEEE--ECC-GGGHH----HHHHHHHHTTCCCCHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred             EEEechhccCCccceeEEE--EeC-HHHHH----HHHHHHhhhccCCCHHHHHHHHHHhCCh-------HHHHHHHHHHH
Confidence            9999999999999999999  454 44444    4444445556688889999888888732       56788889999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CHHH-HHHhHhhccEEEcCC---------C--eEEecCCCC
Q 015435          327 SMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NSEQ-VAFMTKEYHIYMTSD---------G--RISMAGLSS  389 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~l~~~gi~~~~g---------g--Ris~~~~~~  389 (407)
                      ++++++.+.|++.+.   ..+..+.++++.|+.+     +.+. ...+++++||.+.||         +  ||+++. ++
T Consensus       290 ~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~~  365 (391)
T 3h14_A          290 ANRKLMLERLPKAGF---TRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-AT  365 (391)
T ss_dssp             HHHHHHHHHHHHHTC---CCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-CH
T ss_pred             HHHHHHHHHHHHcCC---CcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-CH
Confidence            999999999998873   3345777888888743     4444 456677679999874         1  999997 88


Q ss_pred             CChhHHHHHHHHHHHhh
Q 015435          390 KTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~~  406 (407)
                      +++++++++|++++++.
T Consensus       366 ~~i~~~l~~l~~~~~~~  382 (391)
T 3h14_A          366 ADIEEGLDRLEAFMQAR  382 (391)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998753

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=1.6e-42  Score=330.17  Aligned_cols=367  Identities=16%  Similarity=0.203  Sum_probs=281.2

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      +.+|+...+++++..+...+.+.  +++|||+.|.+   .. +.++.+.+++.+.+.  . ...+|++..|..++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~~g~~~l~~~la   73 (389)
T 1gd9_A            3 LSDRLELVSASEIRKLFDIAAGM--KDVISLGIGEP---DF-DTPQHIKEYAKEALD--K-GLTHYGPNIGLLELREAIA   73 (389)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHTC--SSCEECCCCSC---SS-CCCHHHHHHHHHHHH--T-TCCSCCCTTCCHHHHHHHH
T ss_pred             hhhHhHhCChhHHHHHHHHHhhh--cCeEecCCCCC---CC-CCCHHHHHHHHHHHh--C-CCCCCCCCCCcHHHHHHHH
Confidence            34556666777777777665543  68999999975   22 345566666666664  2 2356887789999999999


Q ss_pred             HHHhCCCCCCCCCCc-eEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           86 KLILGADSPAIKDNR-VTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~-i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      +++....+..+++++ +++  |+|+++++.+++  ...+.+||+|++++|+|+++...++..|.+++.+|...+.++.+|
T Consensus        74 ~~~~~~~g~~~~~~~~v~~--~~g~~~a~~~~~--~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d  149 (389)
T 1gd9_A           74 EKLKKQNGIEADPKTEIMV--LLGANQAFLMGL--SAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLN  149 (389)
T ss_dssp             HHHHHHHCCCCCTTTSEEE--ESSTTHHHHHHH--TTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCC
T ss_pred             HHHHHHhCCCCCCCCeEEE--cCChHHHHHHHH--HHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCC
Confidence            999533333345688 999  999999999994  333678999999999999999999999999999998432356789


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+....++
T Consensus       150 ~~~l~~~l~--~~~~~v~~-~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~~~~~~~  224 (389)
T 1gd9_A          150 VDELKKYVT--DKTRALII-NSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDAR--HYSIASLDGMFER  224 (389)
T ss_dssp             HHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC--CCCGGGSTTCGGG
T ss_pred             HHHHHHhcC--cCceEEEE-ECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCC--CCCHhhccCCCCC
Confidence            999999987  45566666 899999999999999999999999999999999999998875421  1122112111357


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      ++++.|+||.++++|+|+||+  +++ ++    +.+.+.........+++.+.+.++..+++...   . .+++++.+++
T Consensus       225 ~i~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~---~-~~~~~~~~~~  293 (389)
T 1gd9_A          225 TITVNGFSKTFAMTGWRLGFV--AAP-SW----IIERMVKFQMYNATCPVTFIQYAAAKALKDER---S-WKAVEEMRKE  293 (389)
T ss_dssp             EEEEEESTTTTTCGGGCCEEE--ECC-HH----HHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHH---H-HHHHHHHHHH
T ss_pred             EEEEecChhhcCCcccceEEE--EEC-HH----HHHHHHHHHhhhccCCCHHHHHHHHHHHhCCC---c-chHHHHHHHH
Confidence            899999999999999999999  565 44    44445444444456788899999988888642   1 1267888899


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CHHHH-HHhHhhccEEEcCC--------C--eEEecCCC
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NSEQV-AFMTKEYHIYMTSD--------G--RISMAGLS  388 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~l~~~gi~~~~g--------g--Ris~~~~~  388 (407)
                      ++++++++.+.|++.+    +.+..+.++++.|+.+     +.+.+ ..+++++||.+.+|        +  ||+++. +
T Consensus       294 ~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~  368 (389)
T 1gd9_A          294 YDRRRKLVWKRLNEMG----LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-A  368 (389)
T ss_dssp             HHHHHHHHHHHHHHTT----CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-C
T ss_pred             HHHHHHHHHHHHHHcC----CeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-C
Confidence            9999999999999886    6667788888888754     44444 45555799999875        1  999986 8


Q ss_pred             CCChhHHHHHHHHHHHhh
Q 015435          389 SKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~~~  406 (407)
                      ++++++++++|++++++.
T Consensus       369 ~~~i~~~l~~l~~~~~~~  386 (389)
T 1gd9_A          369 YEKLEEAMDRMERVLKER  386 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            899999999999998764

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=1.2e-42  Score=331.87  Aligned_cols=358  Identities=13%  Similarity=0.131  Sum_probs=273.1

Q ss_pred             ccCCCCCchhhhhHhh---hhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435           10 IVRAPEDPILGVTVAY---NKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK   86 (407)
Q Consensus        10 ~~~~~~~~~~~~~~~~---~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~   86 (407)
                      +...+++++.......   ...+++++|||+.|.+   .. +.++.+.+++.+.+.    ...+|++..|..++|+++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~----~~~~y~~~~g~~~lr~~la~   77 (396)
T 3jtx_A            6 LKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEP---KH-PTPKVITDALTASLH----ELEKYPLTAGLPELRQACAN   77 (396)
T ss_dssp             HHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSC---CS-CCCHHHHHHHHHTGG----GGGSCCCTTCCHHHHHHHHH
T ss_pred             hccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCC---CC-CCCHHHHHHHHHHhh----hccCCCCCCCcHHHHHHHHH
Confidence            3344445554444333   3356789999999984   32 445455555544442    45679888899999999999


Q ss_pred             HHhCCCCCC-CCCC-ceEEeecCCcccHHHHHHHHHHhhcCC-----CeEEecCCCCCChHHHHhhcCceeeEEEeecCC
Q 015435           87 LILGADSPA-IKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQ-----LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA  159 (407)
Q Consensus        87 ~~~~~~~~~-~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~g-----d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~  159 (407)
                      ++....+.. ++++ +|++  |+|+++++.++++.  .+.+|     |+|+++.|+|..+...++..|.+++.+++ +++
T Consensus        78 ~l~~~~g~~~~~~~~~i~~--t~g~~~al~~~~~~--~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~  152 (396)
T 3jtx_A           78 WLKRRYDGLTVDADNEILP--VLGSREALFSFVQT--VLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAP  152 (396)
T ss_dssp             HHHHHTTTCCCCTTTSEEE--ESSHHHHHHHHHHH--HCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTT
T ss_pred             HHHHhcCCCCCCCCCeEEE--cCCcHHHHHHHHHH--HhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCC
Confidence            995444443 4567 9999  99999999999533  36786     79999999999999999999999999999 466


Q ss_pred             CCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC-CchhHHH-HH
Q 015435          160 TRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL-DADAQSV-RM  237 (407)
Q Consensus       160 ~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~-~~~~~~~-~~  237 (407)
                      ++.+|++++++++.  ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ....... ..
T Consensus       153 g~~~d~~~l~~~~~--~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  229 (396)
T 3jtx_A          153 SFNPDWRSISEEVW--KRTKLVFV-CSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQ  229 (396)
T ss_dssp             TCCCCGGGSCHHHH--HTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHH
T ss_pred             CCccCHHHHHHhhc--cCcEEEEE-ECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhh
Confidence            67789999999998  45677777 79999999999999999999999999999999999999988652 1111111 11


Q ss_pred             HHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHH
Q 015435          238 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLE  317 (407)
Q Consensus       238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  317 (407)
                      +....++++++.|+||.|+++|+|+||+  +++ ++    +.+.+.........+++.+++.++..++++.       ++
T Consensus       230 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~  295 (396)
T 3jtx_A          230 LGRSRQKLLMFTSLSKRSNVPGLRSGFV--AGD-AE----LLKNFLLYRTYHGSAMSIPVQRASIAAWDDE-------QH  295 (396)
T ss_dssp             TTCCCTTEEEEEESTTTSSCGGGCCEEE--EEC-HH----HHHHHHHHHHHHTCCCCHHHHHHHHHHHHCC-------HH
T ss_pred             cccccCcEEEEeccccccCCcccceEEE--EeC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHhCCH-------HH
Confidence            1113578999999999999999999999  454 44    4444554544455688999999998888764       55


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC----HHHHHHhHhhccEEEcCC--------------
Q 015435          318 LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN----SEQVAFMTKEYHIYMTSD--------------  379 (407)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~~~~g--------------  379 (407)
                      +++.+++++++++.+.+.|++.     +.+..+.+++|.|+.+.    .++...+++++||.+.||              
T Consensus       296 ~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~  370 (396)
T 3jtx_A          296 VIDNRRLYQEKFERVIPILQQV-----FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGE  370 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTT-----SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-----CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCC
Confidence            7788899999999999999765     24456778999998664    344566768789999763              


Q ss_pred             C--eEEecCCCCCChhHHHHHHHHHH
Q 015435          380 G--RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       380 g--Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +  ||+++. +++++++++++|++++
T Consensus       371 ~~iRis~~~-~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          371 GYVRIALVA-DVATCVKAAEDIVSLY  395 (396)
T ss_dssp             TEEEEECCS-CHHHHHHHHHHHHHHC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHHHh
Confidence            2  999987 8899999999998875

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=4.7e-43  Score=336.39  Aligned_cols=368  Identities=15%  Similarity=0.174  Sum_probs=265.9

Q ss_pred             ccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      +..++...+++.+........  ...++++|||+.|.+   +. +.++.+.+++.+.+.  ....++|++..|..++|++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~l~~~   83 (412)
T 2x5d_A           10 RFARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNP---DG-PTPPHIVEKLCTVAQ--REDTHGYSTSRGIPRLRRA   83 (412)
T ss_dssp             -----------CHHHHHHHHHHHHHTTCCCEECSSCCC---CS-CCCHHHHHHHHHTC-----------CTTCCHHHHHH
T ss_pred             hhHHHhhcCchHHHHHHHHHHHHhhcCCCEEecCCCCC---CC-CCCHHHHHHHHHHHh--CCCCCCCCCCCCcHHHHHH
Confidence            456677776666655444332  234678999999985   22 334455555544443  2224578888899999999


Q ss_pred             HHHHHhCCCCCCCCC-CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435           84 SAKLILGADSPAIKD-NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG  162 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~-~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~  162 (407)
                      +++++....+..+++ ++|++  |+|+++++.+++..  .+.+||+|+++.|+|.++...++..|.+++.+|..++.++.
T Consensus        84 ia~~~~~~~g~~~~~~~~v~~--t~g~~~a~~~~~~~--~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~  159 (412)
T 2x5d_A           84 ISHWYRDRYDVQIDPESEAIV--TIGSKEGLAHLMLA--TLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFF  159 (412)
T ss_dssp             HHHHHHHHHCCCCCTTTSEEE--ESCHHHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHH
T ss_pred             HHHHHHHHhCCCCCCCcCEEE--cCChHHHHHHHHHH--hCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCC
Confidence            999994333333455 69999  99999999999544  36799999999999999999999999999999984222344


Q ss_pred             cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      +|++++++.+.  ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|..+.+.+..  ..++..+....
T Consensus       160 ~d~~~l~~~i~--~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~  234 (412)
T 2x5d_A          160 NELERAIRESI--PKPRMMIL-GFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWK--APSIMQVPGAK  234 (412)
T ss_dssp             HHHHHHHHTEE--SCCSEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSTTGG
T ss_pred             CCHHHHHHhcc--cCceEEEE-CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC--CCChhhccCcc
Confidence            78899999887  56778777 899999999999999999999999999999999999999875321  11221121124


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      +++++++|+||.++++|+|+||+  +++ ++    +.+.+.........+++.+++.++..+++...      +++++.+
T Consensus       235 ~~~i~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~  301 (412)
T 2x5d_A          235 DIAVEFFTLSKSYNMAGWRIGFM--VGN-PE----LVSALARIKSYHDYGTFTPLQVAAIAALEGDQ------QCVRDIA  301 (412)
T ss_dssp             GTEEEEEECC-CCSCTTSCCEEE--EEC-HH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCS------HHHHHHH
T ss_pred             CcEEEEecCccccCCcccceEEE--EcC-HH----HHHHHHHHHhhhccCCCHHHHHHHHHHHhCCH------HHHHHHH
Confidence            67899999999999999999999  564 44    44444444444455788899999988887643      4577888


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-------CHHH-HHHhHhhccEEEcCC--------C--eEEe
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-------NSEQ-VAFMTKEYHIYMTSD--------G--RISM  384 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~l~~~gi~~~~g--------g--Ris~  384 (407)
                      ++++++++++.+.|++.+    +.+..+.+|+|.|+.+       +... ...+++++||.+.+|        +  ||++
T Consensus       302 ~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~  377 (412)
T 2x5d_A          302 RQYQQRRDVLVKGLREAG----WMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFAL  377 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHT----CCCCCCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHCC----CEecCCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEe
Confidence            999999999999999886    6667788888888754       3444 445557689999875        2  9999


Q ss_pred             cCCCCCChhHHHHHHHHHHHhh
Q 015435          385 AGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       385 ~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +. +++++++++++|+++++++
T Consensus       378 ~~-~~~~l~~~l~~l~~~l~~~  398 (412)
T 2x5d_A          378 IE-NRDRLRQAVRGIKAMFRAD  398 (412)
T ss_dssp             CS-CHHHHHHHHHHHHHHHHHT
T ss_pred             cC-CHHHHHHHHHHHHHHHHhc
Confidence            97 8899999999999998765

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.8e-42  Score=334.96  Aligned_cols=358  Identities=13%  Similarity=0.179  Sum_probs=265.9

Q ss_pred             CeeeeeeeeeecCCCcc----------------------ccchhHHHHHHHHhcccc-ccccCCCCCCcHHHHHHHHHHH
Q 015435           32 VKLNLGVGAYRTEEGKP----------------------LVLNVVRKAEQLLVNDQS-RVKEYLPIVGLVDFNKLSAKLI   88 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~-~~~~y~~~~g~~~l~~~~a~~~   88 (407)
                      ++|++.+|.|- +.++.                      .|...++++.+.+.+... ....|++..|.+++|+++++++
T Consensus        64 ~~i~~nig~p~-~~~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~  142 (498)
T 3ihj_A           64 EVIRANIGDAQ-AMGQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYI  142 (498)
T ss_dssp             SCBCCC-----------CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHH
T ss_pred             hhhhcCCcCcc-cccCCcchHHHHHHHHhcCccccCcccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            89999999872 22221                      255566666555541111 3567999999999999999999


Q ss_pred             hCCC-CCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC----eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           89 LGAD-SPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL----TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        89 ~~~~-~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd----~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      ...+ +..+++++|++  |+|+++++.+++..+  +.+||    .|+++.|+|+.+...++..|.+++.++++++.++++
T Consensus       143 ~~~~gG~~~~~~~i~~--t~G~~~ai~~~~~~l--~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~  218 (498)
T 3ihj_A          143 TRRDGGVPADPDNIYL--TTGASDGISTILKIL--VSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWAL  218 (498)
T ss_dssp             HHHTTTCCCCGGGEEE--ESSHHHHHHHHHHHH--CCCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBC
T ss_pred             HHhcCCCCCCcccEEE--cCCHHHHHHHHHHHH--cCCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCC
Confidence            6444 35567799999  999999999995433  66765    999999999999999999999999999965556899


Q ss_pred             ChhhHHHHHHcCC---CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435          164 NFQGLLEDLRAAP---SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA  240 (407)
Q Consensus       164 d~~~l~~~i~~~~---~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~  240 (407)
                      |++++++++.+.+   +++++++ ++||||||.+++.+++++|+++|++||++||+||+|..+.+++. ....++..+..
T Consensus       219 d~~~le~~l~~~~~~~~~k~i~l-~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~-~~~~s~~~~~~  296 (498)
T 3ihj_A          219 NVNELRRAVQEAKDHCDPKVLCI-INPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPD-CRFHSFKKVLY  296 (498)
T ss_dssp             CHHHHHHHHHHHTTTSEEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHH
T ss_pred             CHHHHHHHHHhhhccCCCeEEEE-ECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCC-CCcCCHHHHHH
Confidence            9999999997421   3566666 69999999999999999999999999999999999999998642 11223322221


Q ss_pred             -------cCCcEEEEEecCccc-cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh----
Q 015435          241 -------DGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS----  308 (407)
Q Consensus       241 -------~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----  308 (407)
                             ....+++++||||.| |++|+|+||++++..++++.+.+..    ... ...+++.++|.++..+++.+    
T Consensus       297 ~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~----~~~-~~~~~~~~~q~a~~~~l~~~~~g~  371 (498)
T 3ihj_A          297 EMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVK----LLS-VRLCPPVSGQAAMDIVVNPPVAGE  371 (498)
T ss_dssp             HTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHH----HHH-HSCCCCHHHHHHHHHHTCCCCTTS
T ss_pred             HhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHH----HHh-ccCCCCHHHHHHHHHHhcCCccCc
Confidence                   234579999999999 8899999999422356665555444    322 34578889999998888752    


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC---------------CHHH--HHHhHhh
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL---------------NSEQ--VAFMTKE  371 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~--~~~~l~~  371 (407)
                      ..++.|.+..++++++++++++++.+.|++.+.   +.+..+++++|.|+.+               +.+.  +.++|++
T Consensus       372 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g---~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~  448 (498)
T 3ihj_A          372 ESFEQFSREKESVLGNLAKKAKLTEDLFNQVPG---IHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEE  448 (498)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---EECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHH
Confidence            234455566778889999999999999998732   8888999999999632               2333  5778888


Q ss_pred             ccEEEcCC-------C----eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          372 YHIYMTSD-------G----RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       372 ~gi~~~~g-------g----Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +||.+.||       |    |++++ .+++++++++++|++++++
T Consensus       449 ~gI~v~pG~~f~~~~~~~~~Ris~~-~~~e~l~~~i~~L~~~~~~  492 (498)
T 3ihj_A          449 TGICVVPGSGFGQREGTYHFRMTIL-PPVEKLKTVLQKVKDFHIN  492 (498)
T ss_dssp             HCBCCEEGGGTCCCTTCCBEEEECC-SCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcccCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHH
Confidence            99999885       1    99997 4889999999999998865

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=2.5e-42  Score=328.73  Aligned_cols=368  Identities=15%  Similarity=0.133  Sum_probs=280.1

Q ss_pred             ccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      +.+|+...+++++..+.+.+.  ...++++|||+.|.+   .. +.++.+.+++.+.+.  . ...+|++..|..++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~~g~~~l~~~   75 (388)
T 1j32_A            3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEP---DF-NTPKHIVEAAKAALE--Q-GKTRYGPAAGEPRLREA   75 (388)
T ss_dssp             CCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSC---SS-CCCHHHHHHHHHHHH--T-TCCSCCCTTCCHHHHHH
T ss_pred             hhhHhHhCCccHHHHHHHHHHHHHhcCCCEEECCCCCC---CC-CCCHHHHHHHHHHHh--c-CCCCCCCCCCCHHHHHH
Confidence            345666667777766665444  234678999999975   22 345566666666664  2 24568888899999999


Q ss_pred             HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      +++++....+..+++++|++  |+|+++++.+++..  .+.+||+|++++|+|.++...++..|.+++.++...+.++.+
T Consensus        76 la~~~~~~~g~~~~~~~v~~--~~g~~~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~  151 (388)
T 1j32_A           76 IAQKLQRDNGLCYGADNILV--TNGGKQSIFNLMLA--MIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKV  151 (388)
T ss_dssp             HHHHHHHHHCCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCC
T ss_pred             HHHHHHHhcCCCCChhhEEE--cCCHHHHHHHHHHH--hcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCC
Confidence            99999543343345689999  99999999999543  377999999999999999999999999999999843335678


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH-cC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA-DG  242 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~-~~  242 (407)
                      |++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||+++|+|++|.++.+++...  .++..+.. ..
T Consensus       152 d~~~l~~~l~--~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~  226 (388)
T 1j32_A          152 SPEQIRQAIT--PKTKLLVF-NTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQH--LSIGAASPEAY  226 (388)
T ss_dssp             CHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CCGGGSCHHHH
T ss_pred             CHHHHHHhcC--cCceEEEE-eCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC--CCHHHcccccc
Confidence            9999999987  45566666 8899999999999999999999999999999999999988764211  11111111 12


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      +.++++.|+||.++++|+|+||+  +++ ++    +.+.+.......+.+++.+++.++..+++...      +++++.+
T Consensus       227 ~~~~~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~  293 (388)
T 1j32_A          227 ERSVVCSGFAKTYAMTGWRVGFL--AGP-VP----LVKAATKIQGHSTSNVCTFAQYGAIAAYENSQ------DCVQEML  293 (388)
T ss_dssp             HTEEEEEESTTTTTCTTTCCEEE--ECC-HH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCS------HHHHHHH
T ss_pred             CCEEEEeechhccCCcccceEEE--EeC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCCc------HHHHHHH
Confidence            46899999999999999999999  455 43    44445545444556788888988888886432      4567788


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CHHHH-HHhHhhccEEEcCC------C--eEEecCCC
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NSEQV-AFMTKEYHIYMTSD------G--RISMAGLS  388 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~l~~~gi~~~~g------g--Ris~~~~~  388 (407)
                      ++++++++++.+.|++.+.   +.+..+.++++.|+.+     +.+.+ ..+++++||.+.+|      +  ||+++. +
T Consensus       294 ~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~-~  369 (388)
T 1j32_A          294 AAFAERRRYMLDALNAMPG---LECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYAT-D  369 (388)
T ss_dssp             HHHHHHHHHHHHHHHTCTT---CBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCS-C
T ss_pred             HHHHHHHHHHHHHHhhCCC---CcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecC-C
Confidence            9999999999999998732   6777788888888744     44444 45555689999875      2  999985 8


Q ss_pred             CCChhHHHHHHHHHHHhh
Q 015435          389 SKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~~~  406 (407)
                      ++++++++++|+++++++
T Consensus       370 ~~~i~~~~~~l~~~l~~~  387 (388)
T 1j32_A          370 LDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            899999999999998764

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=5.9e-43  Score=335.09  Aligned_cols=344  Identities=15%  Similarity=0.172  Sum_probs=270.6

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCC-CceEEeecCCcc
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKD-NRVTTVQCLSGT  110 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~-~~i~~~~t~g~t  110 (407)
                      ++|||++|.+   ++.+.++.+.+++.+.+.  ......|.+..|..++++++++++....+..+++ ++|++  |+|++
T Consensus        40 ~~id~~~g~~---~~~~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~--~~g~~  112 (407)
T 3nra_A           40 RPVDFSHGDV---DAHEPTPGAFDLFSAGVQ--SGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLII--TPGTQ  112 (407)
T ss_dssp             CCEETTSCCT---TTSCCCTTHHHHHHHHHH--HTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESHHH
T ss_pred             ceeeecCcCC---CCCCCcHHHHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCcH
Confidence            5899999976   444666677777777765  2234468888899999999999984444444444 79999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec----CCCCCcChhhHHHHHHcCCCCcEEEEecC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD----PATRGLNFQGLLEDLRAAPSGAIVLLHAC  186 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~----~~~~~~d~~~l~~~i~~~~~~~~v~i~~~  186 (407)
                      +++.+++  ...+.+||+|+++.|+|.++...++..|.+++.++++.    +.++.+|++++++.+.  ++++++++ ++
T Consensus       113 ~a~~~~~--~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~~~~~v~~-~~  187 (407)
T 3nra_A          113 GALFLAV--AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK--AGARVFLF-SN  187 (407)
T ss_dssp             HHHHHHH--HTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH--TTCCEEEE-ES
T ss_pred             HHHHHHH--HHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh--hCCcEEEE-cC
Confidence            9999994  44477999999999999999999999999999999831    2567899999999998  45677766 88


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-HcCCcEEEEEecCccccccCCCccee
Q 015435          187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-ADGGECLVAQSYAKNMGLYGERVGAL  265 (407)
Q Consensus       187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~  265 (407)
                      |+||||.+++.+++++|+++|++||+++|+||+|..+.+++..  ..++..+. ...++++++.|+||.++++|+|+||+
T Consensus       188 p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~  265 (407)
T 3nra_A          188 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGAS--YTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVA  265 (407)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCC--CCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEE
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CCChhhcCcccCCcEEEEeCcccccCCCeeeEEEE
Confidence            9999999999999999999999999999999999998876432  12222222 23567899999999999999999999


Q ss_pred             EEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 015435          266 SIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDW  345 (407)
Q Consensus       266 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  345 (407)
                        +++ +    .+.+.+.........+++.+++.++..+++...      .++++.+++++++++++.+.|++.+.   +
T Consensus       266 --~~~-~----~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~---~  329 (407)
T 3nra_A          266 --FGS-R----AIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP------GWMEDRIARHQAIRDELLHVLRGCEG---V  329 (407)
T ss_dssp             --EEC-H----HHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCT------THHHHHHHHHHHHHHHHHHHHHTSTT---C
T ss_pred             --EcC-H----HHHHHHHHHHhhhccCCChHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHhcCCC---c
Confidence              565 4    455555555555566778888888888887532      34667778889999999999998732   7


Q ss_pred             ccccCCceeEEecCC-----CHHH-HHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          346 SHIIKQIGMFTFTGL-----NSEQ-VAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       346 ~~~~~~~~~~~~~~~-----~~~~-~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+..+.+++|.|+.+     +.+. ...+++++||.+.+|.          ||+++. +++++++++++|+++++++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~~~~~  405 (407)
T 3nra_A          330 FARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVERY  405 (407)
T ss_dssp             BCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence            777888889998854     3444 4556577899998752          999996 8899999999999998764

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=7.5e-43  Score=334.03  Aligned_cols=364  Identities=15%  Similarity=0.138  Sum_probs=270.9

Q ss_pred             ccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHH
Q 015435            8 GKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKL   87 (407)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~   87 (407)
                      .++...+++.+..........++.++|||+.|.+   +. +.++.+.+++.+.+.  .....+|++..|..++|++++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~lr~~ia~~   97 (404)
T 2o1b_A           24 NKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIP---DG-PTPQGIIDHFQKALT--IPENQKYGAFHGKEAFKQAIVDF   97 (404)
T ss_dssp             HHHHTSCCCTTC-------CCCSSCCEECCCCSC---SS-CCCHHHHHHHHHHTT--CHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             hHhhhCCchHHHHHHHHHHhcCCCCEEecCCcCC---CC-CCCHHHHHHHHHHHh--CCCCCCCCCCCCCHHHHHHHHHH
Confidence            3444445555444444333234567999999985   22 334455555555553  22245687778999999999999


Q ss_pred             HhCCCCCCCCC-CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChh
Q 015435           88 ILGADSPAIKD-NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQ  166 (407)
Q Consensus        88 ~~~~~~~~~~~-~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  166 (407)
                      +....+..+++ ++|++  |+|+++++.++++.  .+.+||+|+++.|+|.++...++..|.+++.++.. ++++.+|++
T Consensus        98 ~~~~~g~~~~~~~~v~~--t~G~~~al~~~~~~--l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~  172 (404)
T 2o1b_A           98 YQRQYNVTLDKEDEVCI--LYGTKNGLVAVPTC--VINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLE-PPHYLPDWS  172 (404)
T ss_dssp             HHHHHCCCCCTTTSEEE--ESSHHHHHHHHHHH--HCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECC-TTTCCCCGG
T ss_pred             HHHHhCCCCCCcccEEE--cCCcHHHHHHHHHH--hcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccC-cccCcCCHH
Confidence            94333333444 79999  99999999999543  36789999999999999999999999999999984 345568999


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      ++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||++||+||+|..+.+++...+...   +....++++
T Consensus       173 ~l~~~l~--~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~---~~~~~~~~i  246 (404)
T 2o1b_A          173 KVDSQII--DKTKLIYL-TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILA---SENGKDVAI  246 (404)
T ss_dssp             GSCHHHH--HHEEEEEE-CSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGG---STTHHHHEE
T ss_pred             HHHHhhc--cCceEEEE-cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhh---cCCCCCCEE
Confidence            9999887  45677776 78999999999999999999999999999999999999887542111111   111124689


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                      +++|+||.++++|+|+||+  +++ ++    +.+.+.........+++.+.|.++..+++...      +++++.+++++
T Consensus       247 ~~~s~sK~~g~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~  313 (404)
T 2o1b_A          247 EIYSLSKGYNMSGFRVGFA--VGN-KD----MIQALKKYQTHTNAGMFGALQDAAIYALNHYD------DFLEEQSNVFK  313 (404)
T ss_dssp             EEEESTTTTTCGGGCCEEE--EEC-HH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHH
T ss_pred             EEEecchhccCchhheEeE--ecC-HH----HHHHHHHHHhhccCCCCHHHHHHHHHHHhcCH------HHHHHHHHHHH
Confidence            9999999999999999999  564 44    44444444444455788899998888886532      55778889999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCCceeEEecCC----CHH-HHHHhHhhccEEEcCC--------C--eEEecCCCCCC
Q 015435          327 SMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----NSE-QVAFMTKEYHIYMTSD--------G--RISMAGLSSKT  391 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~  391 (407)
                      ++++++.+.|++.+    +.+..+.+++|.|+.+    +.+ +...+++++||.+.+|        +  ||+++. ++++
T Consensus       314 ~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~  388 (404)
T 2o1b_A          314 TRRDRFEAMLAKAD----LPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQK  388 (404)
T ss_dssp             HHHHHHHHHHHHTT----CCEECCCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTH
T ss_pred             HHHHHHHHHHHhcC----CeecCCCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHH
Confidence            99999999999886    6777788888888754    334 4556666789999875        2  999996 8899


Q ss_pred             hhHHHHHHHHHHHhh
Q 015435          392 VPHLTDAIHAAVTRM  406 (407)
Q Consensus       392 i~~~~~~l~~~l~~~  406 (407)
                      +++++++|++++++.
T Consensus       389 l~~~l~~l~~~l~~~  403 (404)
T 2o1b_A          389 LDEAAIRLTELAYLY  403 (404)
T ss_dssp             HHHHHHHHHGGGGGG
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999887653

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=100.00  E-value=5.7e-43  Score=335.53  Aligned_cols=363  Identities=14%  Similarity=0.124  Sum_probs=278.8

Q ss_pred             cccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHH
Q 015435            9 KIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLI   88 (407)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~   88 (407)
                      |+...+++.+..+....   .++++|+|+.|.+   +. +.++.+.+++.+.+.  .....+|.+..|..++|+++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~---~~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~l~~~la~~~   74 (410)
T 3e2y_A            4 RIEGLDSNVWVEFTKLA---ADPSVVNLGQGFP---DI-SPPSYVKEELSKAAF--IDNMNQYTRGFGHPALVKALSCLY   74 (410)
T ss_dssp             GGTTCCCCHHHHTTTTT---TSTTSEECSSCCC---CS-CCCHHHHHHHHHHHT--CGGGGSCCCTTCCHHHHHHHHHHH
T ss_pred             hhccCCccHHHHHHHHh---cCCCeEEecCCCC---CC-CCCHHHHHHHHHHHh--CccccCCCCCCChHHHHHHHHHHH
Confidence            45555666655554432   3468999999985   33 556666666666664  334567988889999999999999


Q ss_pred             hCCCCCCCCC-CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec---------C
Q 015435           89 LGADSPAIKD-NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD---------P  158 (407)
Q Consensus        89 ~~~~~~~~~~-~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~---------~  158 (407)
                      ....+..+++ ++|++  |+|+++++.+++.  ..+.+||+|+++.|+|..+...++..|.+++.+++..         .
T Consensus        75 ~~~~~~~~~~~~~i~~--~~g~~~a~~~~~~--~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~  150 (410)
T 3e2y_A           75 GKIYQRQIDPNEEILV--AVGAYGSLFNSIQ--GLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTS  150 (410)
T ss_dssp             HHHHTSCCCTTTSEEE--ESHHHHHHHHHHH--HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBG
T ss_pred             HHHhCCCCCCCCCEEE--eCCcHHHHHHHHH--HhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccc
Confidence            5444444556 79999  9999999999953  3477999999999999999999999999999999852         1


Q ss_pred             CCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH
Q 015435          159 ATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF  238 (407)
Q Consensus       159 ~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~  238 (407)
                      .++.+|++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+
T Consensus       151 ~~~~~d~~~l~~~~~--~~~~~v~~-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~  225 (410)
T 3e2y_A          151 SDWTFDPRELESKFS--SKTKAIIL-NTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHT--HVKIATL  225 (410)
T ss_dssp             GGEECCHHHHHTTCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGS
T ss_pred             cCCcCCHHHHHhhcC--CCceEEEE-eCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCC--CCCHHHc
Confidence            345689999999886  45667666 899999999999999999999999999999999999999886531  1222222


Q ss_pred             HHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh-hHHhHHHH
Q 015435          239 VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST-MYKEWTLE  317 (407)
Q Consensus       239 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~  317 (407)
                      ....++++++.|+||.+|++|+|+||+  +++     +.+...+........++++.+.+.++..++++.. ....+.++
T Consensus       226 ~~~~~~~i~~~S~sK~~g~~G~r~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  298 (410)
T 3e2y_A          226 PGMWERTITIGSAGKTFSVTGWKLGWS--IGP-----AHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECY  298 (410)
T ss_dssp             TTCGGGEEEEEEHHHHSSCGGGCCEEE--ECC-----HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSH
T ss_pred             CCccCeEEEEecchhhcCCCCceEEEE--EEC-----HHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHH
Confidence            233467899999999999999999999  565     4455555555555566788899998888876310 00011245


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC----------------HHHHHHhHhhccEEEcCC--
Q 015435          318 LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN----------------SEQVAFMTKEYHIYMTSD--  379 (407)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~gi~~~~g--  379 (407)
                      +++.+++++++++++.+.|++.+    +.+..+.+++|.|+.+.                .+++..+++++||.+.||  
T Consensus       299 ~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~  374 (410)
T 3e2y_A          299 FNSLPKELEVKRDRMVRLLNSVG----LKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSA  374 (410)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTT----CEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC----CeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchh
Confidence            77888999999999999999887    77788889999987442                156677888899999774  


Q ss_pred             -----------C--eEEecCCCCCChhHHHHHHHH
Q 015435          380 -----------G--RISMAGLSSKTVPHLTDAIHA  401 (407)
Q Consensus       380 -----------g--Ris~~~~~~e~i~~~~~~l~~  401 (407)
                                 +  ||+++. +++++++++++|++
T Consensus       375 f~~~~~~~~~~~~iRis~~~-~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          375 FCDSKSKPHFEKLVRFCFIK-KDSTLDAAEEIFRA  408 (410)
T ss_dssp             GSCTTTHHHHTTEEEEECCC-CHHHHHHHHHHHHT
T ss_pred             hCCCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHh
Confidence                       2  899986 89999999999875

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=9e-42  Score=324.98  Aligned_cols=361  Identities=17%  Similarity=0.165  Sum_probs=277.7

Q ss_pred             cccccCCCCCchhhhhHhhhh--cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYNK--DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      .+++...+++++.++.+.+.+  .+++++|||+.|.+   .. +.++.+.+++.+.+.  . ....|++..|..++|+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~~g~~~lr~~l   87 (389)
T 1o4s_A           15 SRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEP---DF-PTPEPVVEEAVRFLQ--K-GEVKYTDPRGIYELREGI   87 (389)
T ss_dssp             CHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSC---SS-CCCHHHHHHHHHHHT--T-CCCCCCCTTCCHHHHHHH
T ss_pred             HHHHhhcCccHHHHHHHHHHHHHhcCCCEEEccCCCC---CC-CCCHHHHHHHHHHHh--c-CCCCCCCCCCCHHHHHHH
Confidence            356666777777777665542  24678999999975   22 335556666666664  2 234687778999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      ++++....+..+++++|++  |+|+++++.+++..+  +.+||+|++++|+|..+...++..|.+++.+|.+.+.++.+|
T Consensus        88 a~~~~~~~g~~~~~~~v~~--~~g~t~al~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d  163 (389)
T 1o4s_A           88 AKRIGERYKKDISPDQVVV--TNGAKQALFNAFMAL--LDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPS  163 (389)
T ss_dssp             HHHHHHHHTCCCCGGGEEE--ESHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCC
T ss_pred             HHHHHHHhCCCCCHHHEEE--ecCHHHHHHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCC
Confidence            9999433333345689999  999999999995443  779999999999999999999999999999998432356789


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++.   ..++..+....+.
T Consensus       164 ~~~l~~~l~--~~~~~v~~-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~---~~~~~~~~~~~~~  237 (389)
T 1o4s_A          164 LEEVEGLLV--GKTKAVLI-NSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE---FTSILDVSEGFDR  237 (389)
T ss_dssp             HHHHHHTCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC---CCCHHHHCSSSTT
T ss_pred             HHHHHHhcc--cCceEEEE-cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC---CCCHhhcCCCCCc
Confidence            999999886  45566666 89999999999999999999999999999999999999887541   1223233222467


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +++++|+||.++++|+|+||+  +++ ++    +.+.+.........+++.+.+.++..++++.         .++.+++
T Consensus       238 ~i~~~s~sK~~~~~G~r~G~l--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---------~~~~~~~  301 (389)
T 1o4s_A          238 IVYINGFSKSHSMTGWRVGYL--ISS-EK----VATAVSKIQSHTTSCINTVAQYAALKALEVD---------NSYMVQT  301 (389)
T ss_dssp             EEEEEESTTTTTCGGGCCEEE--ECC-HH----HHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC---------CHHHHHH
T ss_pred             EEEEeechhhcCCcccceEEE--EeC-HH----HHHHHHHHhhhcccCCCHHHHHHHHHHHhcc---------HHHHHHH
Confidence            999999999999999999999  565 44    4444444444445577888898888888754         3566788


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC--CHHHH-HHhHhhccEEEcCC------C--eEEecCCCCCChh
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL--NSEQV-AFMTKEYHIYMTSD------G--RISMAGLSSKTVP  393 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~l~~~gi~~~~g------g--Ris~~~~~~e~i~  393 (407)
                      ++++++++.+.|++.+    +.+..+.++++.|+.+  +.+.+ ..+++++||.+.++      +  ||+++. ++++++
T Consensus       302 ~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~-~~~~l~  376 (389)
T 1o4s_A          302 FKERKNFVVERLKKMG----VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT-SIERLT  376 (389)
T ss_dssp             HHHHHHHHHHHHHHTT----CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHH
T ss_pred             HHHHHHHHHHHHHhcC----CeeecCCcceEEEEeCCCCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC-CHHHHH
Confidence            8889999999998876    6666778888888765  45544 45555789999876      2  999996 889999


Q ss_pred             HHHHHHHHHHHh
Q 015435          394 HLTDAIHAAVTR  405 (407)
Q Consensus       394 ~~~~~l~~~l~~  405 (407)
                      +++++|++++++
T Consensus       377 ~~l~~l~~~l~~  388 (389)
T 1o4s_A          377 EALDRIEDFLNS  388 (389)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhc
Confidence            999999998753

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=100.00  E-value=8.9e-42  Score=326.01  Aligned_cols=341  Identities=15%  Similarity=0.196  Sum_probs=265.6

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhcc-ccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND-QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      ++++|||+.|.+   +. +.++.+.+++.+.+.+. .....+|.+..|..++|+++++++....+..+++++|++  |+|
T Consensus        34 ~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~--~~g  107 (398)
T 3ele_A           34 KENVYDFSIGNP---SI-PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYM--TMG  107 (398)
T ss_dssp             GGGCEECCSCCC---CS-CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESS
T ss_pred             CCCeEEeecCCC---CC-CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEE--ccC
Confidence            468999999964   44 44556666666666411 111567988899999999999999544444466789999  999


Q ss_pred             cccHHHHHHHHHHhhcCC-CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435          109 GTGSLRVGAEFLARHYHQ-LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA  187 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~g-d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p  187 (407)
                      +++++.++++.  .+.+| |+|+++.|+|..+...++..|.+++.+|++ ++++++|++++++++.  ++++++++ ++|
T Consensus       108 ~~~al~~~~~~--l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~--~~~~~v~~-~~p  181 (398)
T 3ele_A          108 AAASLSICFRA--LTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPAD-TEHFQIDFDALEERIN--AHTRGVII-NSP  181 (398)
T ss_dssp             HHHHHHHHHHH--HCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCC-TTTSSCCHHHHHHTCC--TTEEEEEE-CSS
T ss_pred             HHHHHHHHHHH--HcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC-CcCCcCCHHHHHHHhC--cCCCEEEE-cCC
Confidence            99999999543  47899 999999999999999999999999999984 4567899999999886  55667666 899


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHH------cCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRS------KGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER  261 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~------~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  261 (407)
                      |||||.+++.+++++|+++|++      ||+++|+||+|.++.+++....  .   .....+++++++|+||.++++|+|
T Consensus       182 ~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~--~---~~~~~~~~i~~~s~sK~~~~~G~r  256 (398)
T 3ele_A          182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVP--F---VTKYYDNTLVCYSYSKSLSLPGER  256 (398)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCC--C---GGGTCSSEEEEEESTTTSSCTTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcC--C---hHhhcCCeEEEEehhhcCCCccce
Confidence            9999999999999999999999      9999999999999988642111  1   123456889999999999999999


Q ss_pred             cceeEEeecChhhHH--HHHHHHhhhhhc-ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015435          262 VGALSIVCKTEDVAS--RVESQLKLVIRP-MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA  338 (407)
Q Consensus       262 ~G~~~~v~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  338 (407)
                      +||+  +++++ +.+  .+...+...... .+.+++.+.+.++..++++..           .+++++++++++.+.|++
T Consensus       257 ~G~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----------~~~~~~~~~~~l~~~L~~  322 (398)
T 3ele_A          257 IGYV--LVPDE-VYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-----------DINAYKENRDLLYEGLTR  322 (398)
T ss_dssp             CEEE--ECCTT-STTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred             eEEE--EEcch-hhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHH
Confidence            9999  56643 211  233333333222 244677788888877776542           246677888999999988


Q ss_pred             cCCCCCcccccCCceeEEecCC---CHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          339 RGTPGDWSHIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+    +.+..+.+++|.|+.+   +.+.+.+.|.++||.+.+|.        ||+++. +++++++++++|+++++++
T Consensus       323 ~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~~  396 (398)
T 3ele_A          323 IG----YHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCV-DREMIKHSMPAFEKIYKKY  396 (398)
T ss_dssp             HT----CCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             cC----CeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence            87    6778888999888855   45556566777999998862        999984 8899999999999999865

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=100.00  E-value=6e-42  Score=329.94  Aligned_cols=371  Identities=14%  Similarity=0.171  Sum_probs=278.8

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHH----------HHHhccccccccCCCCC
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAE----------QLLVNDQSRVKEYLPIV   75 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~y~~~~   75 (407)
                      +.+|+...+++++..+.....+. .+++|+|+.|.|   +....|........          ...    ....+|.+..
T Consensus         7 ~s~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~G~p---~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~   78 (425)
T 2r2n_A            7 ITAASAARNPSPIRTMTDILSRG-PKSMISLAGGLP---NPNMFPFKTAVITVENGKTIQFGEEMM----KRALQYSPSA   78 (425)
T ss_dssp             SCHHHHTCCCCSGGGHHHHHHHS-CTTCEECCCCCC---CGGGCSEEEEEEEETTSCCEEECHHHH----HHHTSCCCTT
T ss_pred             HHHHHhcCCCchHHHHHHHhhcC-CCCeEEcCCcCC---CchhCCHHHHHHHHhhcccccccccch----hhhcCCCCCC
Confidence            56777778888888877655542 367999999987   32122321111000          011    1134699999


Q ss_pred             CcHHHHHHHHHHHhCCCCCCCC-------CCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc
Q 015435           76 GLVDFNKLSAKLILGADSPAIK-------DNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL  148 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~-------~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~  148 (407)
                      |++++|+++++++...++...+       +++|++  |+|+++++.+++..  .+.+||+|++++|+|..+...++..|.
T Consensus        79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~--t~G~~~al~~~~~~--l~~~gd~Vlv~~p~y~~~~~~~~~~g~  154 (425)
T 2r2n_A           79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCV--TSGSQQGLCKVFEM--IINPGDNVLLDEPAYSGTLQSLHPLGC  154 (425)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEE--ESSHHHHHHHHHHH--HCCTTCEEEEESSCCHHHHHHHGGGTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEE--eCcHHHHHHHHHHH--hCCCCCEEEEeCCCcHHHHHHHHHcCC
Confidence            9999999999998443343332       268999  99999999999544  377999999999999999999999999


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcC----------CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecc
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAA----------PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDS  218 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~----------~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~  218 (407)
                      +++.+|++ +  .++|++++++.+.+.          +++++++++++||||||.+++.+++++|+++|++||++||+||
T Consensus       155 ~~~~v~~~-~--~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De  231 (425)
T 2r2n_A          155 NIINVASD-E--SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDD  231 (425)
T ss_dssp             EEEEECEE-T--TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEeCcC-C--CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEC
Confidence            99999984 3  369999999998631          3467777768999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHH
Q 015435          219 AYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGA  298 (407)
Q Consensus       219 ~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (407)
                      +|.++.+++..  ..++..+ +..+++++++||||.++ +|+|+||+  +++     +.+.+.+.........+++.++|
T Consensus       232 ~~~~~~~~g~~--~~~~~~~-~~~~~~i~~~s~SK~~~-~GlRiG~~--~~~-----~~l~~~l~~~~~~~~~~~~~~~q  300 (425)
T 2r2n_A          232 PYYFLQFNKFR--VPTFLSM-DVDGRVIRADSFSKIIS-SGLRIGFL--TGP-----KPLIERVILHIQVSTLHPSTFNQ  300 (425)
T ss_dssp             TTGGGBSSSSC--CCCTGGG-CTTSCEEEEEESTTTTC-STTCCEEE--EEE-----HHHHHHHHHHHHTTTCSSCHHHH
T ss_pred             CcccccCCCCC--CCCcccc-CCCCCEEEEccchhhcc-CccceEEE--ecC-----HHHHHHHHHHHHHhcCCCCHHHH
Confidence            99998876421  1122222 22467899999999999 99999999  576     44555555555555568899999


Q ss_pred             HHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCc-ccccCCceeEEecCC----C-HHHHHHhHhh
Q 015435          299 SIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR-GTPGDW-SHIIKQIGMFTFTGL----N-SEQVAFMTKE  371 (407)
Q Consensus       299 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~-~~~~~~~~~~~~~~~----~-~~~~~~~l~~  371 (407)
                      .++..++++.. .+.|.+++++++++++++++++.+.|++. +.   + .+..|.+|+|.|+.+    + .+++.+.+.+
T Consensus       301 ~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~  376 (425)
T 2r2n_A          301 LMISQLLHEWG-EEGFMAHVDRVIDFYSNQKDAILAAADKWLTG---LAEWHVPAAGMFLWIKVKGINDVKELIEEKAVK  376 (425)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---SEEECCCSBSSEEEEEETTCSCCHHHHHTHHHH
T ss_pred             HHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHH
Confidence            99988887521 12345678889999999999999999874 21   4 456778999999854    2 3445666777


Q ss_pred             ccEEEcCC-----------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          372 YHIYMTSD-----------G--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       372 ~gi~~~~g-----------g--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +||.+.||           +  ||+++..+++++++++++|+++++++
T Consensus       377 ~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~  424 (425)
T 2r2n_A          377 MGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES  424 (425)
T ss_dssp             TTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999863           2  99988448899999999999998764

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=100.00  E-value=1.8e-41  Score=321.37  Aligned_cols=348  Identities=13%  Similarity=0.072  Sum_probs=266.9

Q ss_pred             CCCCchhhhhHhhhh--cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhC
Q 015435           13 APEDPILGVTVAYNK--DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILG   90 (407)
Q Consensus        13 ~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~   90 (407)
                      .+++++++....++.  .++ ++|||+.|.+   .. +.|+.+.+++.+.+    .....|++..|..++|+++++++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~g-~~i~l~~~~~---~~-~~~~~v~~a~~~~~----~~~~~y~~~~g~~~lr~~la~~l~~   74 (376)
T 3ezs_A            4 FEPYPFERLRALLKEITPKK-RGLDLGIGEP---QF-ETPKFIQDALKNHT----HSLNIYPKSAFEESLRAAQRGFFKR   74 (376)
T ss_dssp             CCCCHHHHHHHHHTTCCCSS-CCCBCSSCCC---CS-CCCHHHHHHHHTTG----GGGGSCCCTTCCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHhhhccC-CEEEeCCCCC---CC-CCCHHHHHHHHHhh----hhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            455666666655442  234 9999999984   22 44444444444333    2356798888999999999999954


Q ss_pred             CCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC--CCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhH
Q 015435           91 ADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH--QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGL  168 (407)
Q Consensus        91 ~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~--gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l  168 (407)
                      ..+..+++++|++  |+|+++++.++++.  .+.+  ||+|+++.|+|..+...++..|.+++.+|++++  .++++ ++
T Consensus        75 ~~g~~~~~~~i~~--t~g~~~al~~~~~~--~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~-~l  147 (376)
T 3ezs_A           75 RFKIELKENELIS--TLGSREVLFNFPSF--VLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKE--NDFTP-SL  147 (376)
T ss_dssp             HHSCCCCGGGEEE--ESSSHHHHHHHHHH--HTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGG--GTSCC-CC
T ss_pred             HhCCCCCHHHEEE--CcCcHHHHHHHHHH--HcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCC--CCcch-hH
Confidence            3344446799999  99999999998543  3678  999999999999999999999999999998432  24555 66


Q ss_pred             HHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH-----cCC
Q 015435          169 LEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA-----DGG  243 (407)
Q Consensus       169 ~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~-----~~~  243 (407)
                      ++.+.  ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.   ..+......     ..+
T Consensus       148 ~~~~~--~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~~~  221 (376)
T 3ezs_A          148 NEKEL--QEVDLVIL-NSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP---PPSLLEACMLAGNEAFK  221 (376)
T ss_dssp             CHHHH--HHCSEEEE-CSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC---CCCHHHHHHHTTCTTCT
T ss_pred             Hhhhc--cCCCEEEE-cCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC---CCCHHHccccccccccC
Confidence            67776  45778777 79999999999999999999999999999999999999988652   222222222     467


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      +++++.|+||.+|++|+|+||+  +++ ++    +.+.+.........+++.+++.++..++++.       +++++.++
T Consensus       222 ~~i~~~s~sK~~g~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~  287 (376)
T 3ezs_A          222 NVLVIHSLSKRSSAPGLRSGFI--AGD-SR----LLEKYKAFRAYLGYTSANAIQKASEAAWLDD-------RHAEFFRN  287 (376)
T ss_dssp             TEEEEEESTTTTTCGGGCCEEE--EEC-HH----HHHHHHHHHTTTCCCCCHHHHHHHHHHHHCS-------HHHHHHHH
T ss_pred             cEEEEecchhccCCccceeEEE--eeC-HH----HHHHHHHHHhhhcCCCChHHHHHHHHHHhCc-------HHHHHHHH
Confidence            8999999999999999999999  454 44    4555555555455678899999999888864       44778889


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-CHHH-HHHhHhhccEEEcCC----------C--eEEecCCCC
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-NSEQ-VAFMTKEYHIYMTSD----------G--RISMAGLSS  389 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~l~~~gi~~~~g----------g--Ris~~~~~~  389 (407)
                      +++++++++.+.|+  +    +.  .+.+++|.|+.+ +.+. ...+++++||.+.||          +  ||+++. ++
T Consensus       288 ~~~~~~~~l~~~l~--~----~~--~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~  358 (376)
T 3ezs_A          288 IYANNLKLARKIFK--N----TL--IYPYSFYVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DT  358 (376)
T ss_dssp             HHHHHHHHHHHHST--T----CC--CCSBSSEEEEECSCHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CH
T ss_pred             HHHHHHHHHHHHhc--C----CC--CCCcceEEEEECCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CH
Confidence            99999999999887  4    44  567888999877 3444 455555589999764          1  999986 89


Q ss_pred             CChhHHHHHHHHHHHh
Q 015435          390 KTVPHLTDAIHAAVTR  405 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~  405 (407)
                      +++++++++|++++++
T Consensus       359 ~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          359 PLLEKPLEIIETYREN  374 (376)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998865

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.3e-41  Score=328.89  Aligned_cols=363  Identities=13%  Similarity=0.104  Sum_probs=278.2

Q ss_pred             CCchhhhhHh---hhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCC
Q 015435           15 EDPILGVTVA---YNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGA   91 (407)
Q Consensus        15 ~~~~~~~~~~---~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~   91 (407)
                      .+++..+...   +....++++|||+.|.+   .. +.++.+.+++.+.+.  .....+|.+..|..++|+++++++...
T Consensus        25 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~lr~~la~~~~~~   98 (437)
T 3g0t_A           25 MASIRDLVALVTNLEKATGTKFCRMEMGVP---GL-PAPQIGIETEIQKLR--EGVASIYPNLDGLPELKQEASRFAKLF   98 (437)
T ss_dssp             GCCHHHHHHHHHHHHHHHTCCCEECCCCSC---CS-CCCHHHHHHHHHHHH--HTGGGSCCCTTCCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhcCCCEEeccCcCC---CC-CCCHHHHHHHHHHHh--CCcCcCCCCCCChHHHHHHHHHHHHHh
Confidence            3445444433   33345689999999985   22 556666666666664  222377988889999999999999544


Q ss_pred             CCCCCCCCceEEeecCCcccHHHHHHHHHHhh--cCCC--eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhh
Q 015435           92 DSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH--YHQL--TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQG  167 (407)
Q Consensus        92 ~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~--~~gd--~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  167 (407)
                      ++..+++++|++  |+|+++++.+++..+  +  .+||  +|+++.|+|.++...++..|.+++.++++ ++++.+|+++
T Consensus        99 ~g~~~~~~~i~~--t~g~t~al~~~~~~l--~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~  173 (437)
T 3g0t_A           99 VNIDIPARACVP--TVGSMQGCFVSFLVA--NRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREK  173 (437)
T ss_dssp             HCCCCCGGGEEE--ESHHHHHHHHHHHHH--TTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHH
T ss_pred             hCCCCCcccEEE--eCCHHHHHHHHHHHH--hcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHH
Confidence            444556789999  999999999995433  5  8999  99999999999999999999999999994 5566789999


Q ss_pred             HHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh---HHH-HHHHHcCC
Q 015435          168 LLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA---QSV-RMFVADGG  243 (407)
Q Consensus       168 l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~---~~~-~~~~~~~~  243 (407)
                      +++++.. ++++++++ ++||||||++++.+++++|+++|++||++||+|++|+.+.+++.. ..   .++ ..+....+
T Consensus       174 l~~~l~~-~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  250 (437)
T 3g0t_A          174 LESYLQT-GQFCSIIY-SNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDY-SHPGEPLYQPSVANYTD  250 (437)
T ss_dssp             HHHHHTT-TCCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCC-CSTTSSCCCCCGGGTCS
T ss_pred             HHHHHhc-CCceEEEE-eCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCc-CcccccchhhccCCCCC
Confidence            9999932 45677777 899999999999999999999999999999999999988775211 11   000 11223367


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHH-H-----------------HhhhhhcccCCCChhHHHHHHHHh
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVES-Q-----------------LKLVIRPMYSSPPIHGASIVATIL  305 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~l  305 (407)
                      ++++++|+||.++++|+|+||+  +++     +.+.. .                 +.........+++.+++.++..++
T Consensus       251 ~~i~~~s~sK~~~~~G~r~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  323 (437)
T 3g0t_A          251 NYILALSSSKAFSYAGQRIGVL--MIS-----GKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAML  323 (437)
T ss_dssp             CEEEEEESTTTTSCGGGCCEEE--EEC-----HHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHH
T ss_pred             cEEEEEcCccCCCCccceeEEE--EEC-----HHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHH
Confidence            8899999999999999999999  566     34454 4                 554444455688899999999888


Q ss_pred             cChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc------cC-CceeEEecCC---CHHHHHHhHhhccEE
Q 015435          306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI------IK-QIGMFTFTGL---NSEQVAFMTKEYHIY  375 (407)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------~~-~~~~~~~~~~---~~~~~~~~l~~~gi~  375 (407)
                      +...   .|.+++++.+++++++++++.+.|++.+    +.+.      .+ .+++|.|+.+   +.+.+.+.|.++||.
T Consensus       324 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~  396 (437)
T 3g0t_A          324 KACN---DGEYNFRDSVIEYGRKARIMKKMFLDNG----FNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMC  396 (437)
T ss_dssp             HHHH---TTSCCHHHHHHHHHHHHHHHHHHHHTTT----EEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEE
T ss_pred             hCcH---hHHHHHHHHHHHHHHHHHHHHHHHHHcC----CEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeE
Confidence            7542   1112267888999999999999999886    6766      34 7888888744   566665555567999


Q ss_pred             EcCC--------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          376 MTSD--------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       376 ~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +.++        +  ||+++..+++++++++++|++++++
T Consensus       397 v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          397 AITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             CEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred             EeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            9876        2  9999876889999999999998764

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=100.00  E-value=3.1e-41  Score=327.33  Aligned_cols=344  Identities=15%  Similarity=0.170  Sum_probs=265.3

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc--cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ--SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      .+++++|||++|.+   +. +.++.+++++.+.+....  .....|.+..|.+++|+++++++.  ++..+++++|++  
T Consensus        66 ~~~~~~i~l~~g~~---~~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~--  137 (449)
T 3qgu_A           66 NPDAKIISLGIGDT---TE-PLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFI--  137 (449)
T ss_dssp             CTTCCCEECSSCCC---CC-CCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEE--
T ss_pred             CCCCCEEEeeCCCC---CC-CCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEE--
Confidence            34679999999964   33 666677777766664111  234579888999999999999995  555567789999  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCce----------eeEEEeecCCCCCcChhhHHHHHHcC
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLS----------VKTYRYYDPATRGLNFQGLLEDLRAA  175 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~----------~~~v~~~~~~~~~~d~~~l~~~i~~~  175 (407)
                      |+|+++++.++   ...+.+||+|++++|+|.++...++..|.+          ++.++++++.++..+++++       
T Consensus       138 t~G~~~al~~~---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  207 (449)
T 3qgu_A          138 SDGSKCDIARI---QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-------  207 (449)
T ss_dssp             ESCHHHHHHHH---HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-------
T ss_pred             ccCHHHHHHHH---HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-------
Confidence            99999999987   334689999999999999999999999998          9999985443444454432       


Q ss_pred             CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++..  ..++..+....+.++++.||||.+
T Consensus       208 ~~~~~v~l-~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~  284 (449)
T 3qgu_A          208 KRTDIIFF-CSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDC--PKTIYEIPGADEVAIETCSFSKYA  284 (449)
T ss_dssp             CCCSEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTS--CSSGGGSTTGGGTEEEEEECSGGG
T ss_pred             CCCCEEEE-eCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCC--CCCHhhccCCCCcEEEEecchhhc
Confidence            46778777 699999999999999999999999999999999999999886421  222222222346789999999999


Q ss_pred             cccCCCcceeEEeecChhhHHH----HHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASR----VESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQ  331 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (407)
                      |++|+|+||+  +++ +++.+.    +...+.......+.+++.++|.++..++.+..     .+++++.++++++++++
T Consensus       285 g~~G~r~G~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~  356 (449)
T 3qgu_A          285 GFTGVRLGWT--VVP-KALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG-----LKEMNAMIKFYKENAQI  356 (449)
T ss_dssp             TCTTCCCEEE--ECC-TTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred             CCccceeEEE--ecC-HHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC-----HHHHHHHHHHHHHHHHH
Confidence            9999999999  455 333221    11123333334455788999999998887532     15577888999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCceeEEecCC---CH-HHHHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHH
Q 015435          332 LFDALSARGTPGDWSHIIKQIGMFTFTGL---NS-EQVAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTD  397 (407)
Q Consensus       332 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~  397 (407)
                      +.+.|++.|    +.+..+.+++|.|+.+   +. +++..+++++||.+.||        +  ||++.. ++++++++++
T Consensus       357 l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~i~~~l~  431 (449)
T 3qgu_A          357 LKTTFTEMG----FSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SRENILEAVR  431 (449)
T ss_dssp             HHHHHHHTT----CCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHH
T ss_pred             HHHHHHHCC----CeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHHHHHHHH
Confidence            999999987    7777888889999865   34 44567778789999875        2  899876 8899999999


Q ss_pred             HHHHHHHh
Q 015435          398 AIHAAVTR  405 (407)
Q Consensus       398 ~l~~~l~~  405 (407)
                      +|++++++
T Consensus       432 ~l~~~~~~  439 (449)
T 3qgu_A          432 RFKEAYGK  439 (449)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHh
Confidence            99998854

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=1.5e-41  Score=327.55  Aligned_cols=346  Identities=15%  Similarity=0.162  Sum_probs=261.6

Q ss_pred             CCCeeeeeeeeeecCCCccccc--hhHHHH--HHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVL--NVVRKA--EQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ....|||+.|.|   +....|.  .+.+..  .+.+.+......+|++..|.+++|+++++++ +     +++++|++  
T Consensus        32 ~~~~i~~~~G~p---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~-~-----~~~~~i~~--  100 (427)
T 3ppl_A           32 KNLKLDLTRGKP---SSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLL-G-----VPVEQVLA--  100 (427)
T ss_dssp             TCCCEECCCCSC---CHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHH-T-----SCGGGEEE--
T ss_pred             CCceEecCCCCC---ChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHh-C-----CCcceEEE--
Confidence            457899999986   2212222  344333  2333211234578988899999999999999 3     34589999  


Q ss_pred             cCCcccHH--HHHHHHHHhhc--C----------CCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHH
Q 015435          106 CLSGTGSL--RVGAEFLARHY--H----------QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLED  171 (407)
Q Consensus       106 t~g~t~a~--~~~~~~~~~~~--~----------gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~  171 (407)
                      |+|+++++  .+++..+  +.  +          ||+|++++|+|..+...++..|.+++.+|++ +.  ++|+++++++
T Consensus       101 t~G~~~al~~~~~~~~l--~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~-~~--g~d~~~l~~~  175 (427)
T 3ppl_A          101 GDASSLNIMFDVISWSY--IFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMN-ED--GPDMDAVEEL  175 (427)
T ss_dssp             CSSCHHHHHHHHHHHHH--HHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEE-TT--EECHHHHHHH
T ss_pred             eCCcHHHHHHHHHHHHH--hccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCC-CC--CCCHHHHHHH
Confidence            99999999  4664333  44  5          8999999999999999999999999999995 32  5999999999


Q ss_pred             HHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHH-HHcCceeeeccccccccCCCCCchhHHHHHH---HHcCCcEEE
Q 015435          172 LRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLM-RSKGLLPFFDSAYQGFASGSLDADAQSVRMF---VADGGECLV  247 (407)
Q Consensus       172 i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~-~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~---~~~~~~~i~  247 (407)
                      +. .+++++++++++||||||.+++.+++++|+++| ++||+++|+||+|.++.+.+......++..+   .+..+++++
T Consensus       176 l~-~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  254 (427)
T 3ppl_A          176 VK-NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWA  254 (427)
T ss_dssp             TT-STTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEE
T ss_pred             Hh-cCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEE
Confidence            84 245677777678999999999999999999999 9999999999999997765432222222222   235678999


Q ss_pred             EEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 015435          248 AQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIIS  327 (407)
Q Consensus       248 ~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  327 (407)
                      ++||||. +++|+|+||+  +++     +.+...+.........+++.+.|.++..++++..   .+.+++++.++.+++
T Consensus       255 ~~S~SK~-~~~G~r~G~~--~~~-----~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~  323 (427)
T 3ppl_A          255 FTSTSKI-TLAGAGVSFF--LTS-----AENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAE---GVRAVMRKHAASLAP  323 (427)
T ss_dssp             EEESTTT-SCTTSSCEEE--ECC-----HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHH---HHHHHHHHHHHHHHH
T ss_pred             Eechhhc-cCcCccEEEE--EcC-----HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChh---hHHHHHHHHHHHHHH
Confidence            9999999 6799999999  565     4455555555555566889999999999998732   234556777788888


Q ss_pred             HHHHHHHHHHh----cCCCCCcccccCCceeEEecCC---CHHHHHHhHhhccEEEcCC----------C----eEEecC
Q 015435          328 MRQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSD----------G----RISMAG  386 (407)
Q Consensus       328 ~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g----------g----Ris~~~  386 (407)
                      +++.+.+.|.+    .+.   +.+..|.+|+|.|+.+   +.+.+.+.|.++||.+.|+          +    ||+++.
T Consensus       324 ~~~~l~~~L~~~l~~~~~---~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~  400 (427)
T 3ppl_A          324 KFNKVLEILDSRLAEYGV---AQWTVPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSL  400 (427)
T ss_dssp             HHHHHHHHHHHHHGGGTC---CEECCCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS
T ss_pred             HHHHHHHHHHHhcCCCCc---eEEeCCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCC
Confidence            88877777754    222   5667788999999866   3566667777899999983          1    999986


Q ss_pred             CCCCChhHHHHHHHHHHHhh
Q 015435          387 LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+++++++++++|++++++.
T Consensus       401 ~~~~~i~~~~~~l~~~l~~~  420 (427)
T 3ppl_A          401 PPVEELEVAMDGVATCVLLA  420 (427)
T ss_dssp             SCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH
Confidence            67799999999999998753

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=100.00  E-value=6e-41  Score=323.55  Aligned_cols=353  Identities=20%  Similarity=0.312  Sum_probs=269.3

Q ss_pred             CCCeeeeeeeeeecCCCccccchh--HHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCc---eEEe
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNV--VRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNR---VTTV  104 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~---i~~~  104 (407)
                      .+++|||+.|.+. +.+  .++.+  ++++.+.+.  .....+|++..|..++|+++++++...+ ..+++++   |++ 
T Consensus        46 ~~~~i~l~~g~~~-~~~--~~~~~~~~~a~~~~~~--~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~-  118 (430)
T 2x5f_A           46 KSTTYNATIGMAT-NKD--GKMFASSLDAMFNDLT--PDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIV-  118 (430)
T ss_dssp             TTCSEECCCSSCE-ETT--EECCCHHHHTTBSSCC--GGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEE-
T ss_pred             CCCcEEeeeeecc-CCC--CchhhHHHHHHHHhcC--cccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEE-
Confidence            3689999999752 123  23333  554444432  1135679888899999999999995432 3455678   999 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhh-cCceeeEEEeecCCCCCcChhhHHHHHHcCC-CCcEEE
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTL-AGLSVKTYRYYDPATRGLNFQGLLEDLRAAP-SGAIVL  182 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~-~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~~~~v~  182 (407)
                       |+|+++++.+++..  .+.+||+|+++.|+|.++...++. .|.+++.+++.++ ++++|++++++.+.+.+ ++++++
T Consensus       119 -t~g~~~al~~~~~~--l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~~v~  194 (430)
T 2x5f_A          119 -TNALTHGLSLVGDL--FVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDK-DGHYTTDSLVEALQSYNKDKVIMI  194 (430)
T ss_dssp             -ESHHHHHHHHHHHH--HCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCT-TSCBCSHHHHHHHHHCCSSEEEEE
T ss_pred             -cCCchHHHHHHHHH--HhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCc-cCCcCHHHHHHHHHhcCCCCEEEE
Confidence             99999999999543  367999999999999999999999 9999999998432 36899999999997432 345555


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHH-----cCceeeeccccccccCCCCCchhHHHH-HHHHcCCc---EEEEEecCc
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRS-----KGLLPFFDSAYQGFASGSLDADAQSVR-MFVADGGE---CLVAQSYAK  253 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~-----~~~~li~D~~y~~~~~~~~~~~~~~~~-~~~~~~~~---~i~~~s~sK  253 (407)
                      + ++||||||.+++.+++++|+++|++     ||+++|+||+|.++.+++..  ..++. .+....++   +++++|+||
T Consensus       195 i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~s~sK  271 (430)
T 2x5f_A          195 L-NYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVY--TQSLFTALTNLHSNAILPIRLDGATK  271 (430)
T ss_dssp             E-CSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSC--CSCHHHHHHTTCCTTEEEEEEEEHHH
T ss_pred             E-cCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCccc--chHHHHHHhhccCCcceEEEEEeccc
Confidence            5 8999999999999999999999999     99999999999999876421  12222 33333567   899999999


Q ss_pred             cccccCCCcceeEEee--cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhc-ChhhHHhHHHHHHHHHHHHHHHHH
Q 015435          254 NMGLYGERVGALSIVC--KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK-DSTMYKEWTLELKAMADRIISMRQ  330 (407)
Q Consensus       254 ~~~~~G~r~G~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~  330 (407)
                      .++++|+|+||+  ++  +++++.+.+........+..+.+++.++|.++..+++ +.    .|.+.+++.+++++++++
T Consensus       272 ~~~~~G~riG~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~  345 (430)
T 2x5f_A          272 EFFAWGFRVGFM--TFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNK----QFDKEIEQNIQTLKERYE  345 (430)
T ss_dssp             HTTCGGGCCEEE--EEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCeEEE--EEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccCh----HHHHHHHHHHHHHHHHHH
Confidence            999999999999  46  3565555544322222222456889999999999998 75    244556778999999999


Q ss_pred             HHHHHHH----hcCCCCCcccccCCceeEEecCC---CHHHH-HHhHhhccEEEcCCC----eEEecCCCCCChhHHHHH
Q 015435          331 QLFDALS----ARGTPGDWSHIIKQIGMFTFTGL---NSEQV-AFMTKEYHIYMTSDG----RISMAGLSSKTVPHLTDA  398 (407)
Q Consensus       331 ~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~l~~~gi~~~~gg----Ris~~~~~~e~i~~~~~~  398 (407)
                      ++.+.|+    +.+    +.+..+.+|+|.|+.+   +.+.+ ..+++++||.+.||+    ||+++..+++++++++++
T Consensus       346 ~l~~~L~~~~~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~~~e~i~~~~~~  421 (430)
T 2x5f_A          346 VTKEVVYADQYHSH----WQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDS  421 (430)
T ss_dssp             HHHHHHTCGGGTTT----EEECCCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEECSSSEEEEEGGGSCGGGHHHHHHH
T ss_pred             HHHHHHHhhCCCCC----ceeeCCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCeEEEEEecCCHHHHHHHHHH
Confidence            9999998    444    7777888899888754   45544 455555899999974    999984488999999999


Q ss_pred             HHHHHHhh
Q 015435          399 IHAAVTRM  406 (407)
Q Consensus       399 l~~~l~~~  406 (407)
                      |+++++++
T Consensus       422 l~~~l~~~  429 (430)
T 2x5f_A          422 IAKAIDDL  429 (430)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99999865

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=2.7e-40  Score=316.64  Aligned_cols=373  Identities=16%  Similarity=0.218  Sum_probs=276.2

Q ss_pred             ccccccCCCCCchhhhhHhhhh--cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNK--DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      +..|+...+++++....+....  .++.++|||+.|.+. ..+ ..++.+.+++.+.+.+...... |++..|..++|++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~-~~~-~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~   83 (407)
T 2zc0_A            7 LAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPD-PEL-IPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREE   83 (407)
T ss_dssp             SCGGGGGCCCCHHHHHHHHHHHHHHSSCCCEECCSCCCC-TTT-SCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHH
T ss_pred             hhhhhccCCchHHHHHHHhhhcccCCCCceEeCCCCCCC-chh-CCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHH
Confidence            4566666666666666554442  334589999999861 222 2234455555555541111235 8888899999999


Q ss_pred             HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      +++++....+..+++++|++  |+|+++++.+++..+  +.+||+|+++.|+|.++...++..|.+++.+|.+ ++  ++
T Consensus        84 la~~~~~~~g~~~~~~~v~~--t~g~t~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~--~~  156 (407)
T 2zc0_A           84 LAAFLKKYDHLEVSPENIVI--TIGGTGALDLLGRVL--IDPGDVVITENPSYINTLLAFEQLGAKIEGVPVD-ND--GM  156 (407)
T ss_dssp             HHHHHHHHSCCCCCGGGEEE--ESHHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE-TT--EE
T ss_pred             HHHHHHHhcCCCCCcceEEE--ecCHHHHHHHHHHHh--cCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccC-CC--CC
Confidence            99999433333345689999  999999999995443  6799999999999999999999999999999984 32  49


Q ss_pred             ChhhHHHHHH----cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH
Q 015435          164 NFQGLLEDLR----AAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV  239 (407)
Q Consensus       164 d~~~l~~~i~----~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~  239 (407)
                      |++++++.+.    +.+++++++++++|+||||.+++.+++++|+++|++||+++|+|++|..+.+++..  ..++..+ 
T Consensus       157 d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~-  233 (407)
T 2zc0_A          157 RVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGD--IVPLKAL-  233 (407)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSS--CCCGGGG-
T ss_pred             CHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCC--CCChhhc-
Confidence            9999999987    43345666666999999999999999999999999999999999999998875421  1122112 


Q ss_pred             HcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHH-HHH
Q 015435          240 ADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWT-LEL  318 (407)
Q Consensus       240 ~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~  318 (407)
                      +..+++++++|+||.++ +|+|+||+  +++ ++    +.+.+.........+++.+.+.++..+++...    +. +++
T Consensus       234 ~~~~~~i~~~s~sK~~~-~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~  301 (407)
T 2zc0_A          234 DNEGRVIVAGTLSKVLG-TGFRIGWI--IAE-GE----ILKKVLMQKQPIDFCAPAISQYIALEYLKRGY----FEKYHL  301 (407)
T ss_dssp             CSSCCEEEEEESTTTTC-TTSCCEEE--ECC-HH----HHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTH----HHHHTT
T ss_pred             CCCCCEEEEcccccccC-CCcceEEE--ecC-HH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCC----chHHHH
Confidence            22357899999999999 99999999  565 44    44444444444445678889999988887652    33 456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEecCC----CHHHH-HHhHhhccEEEcCC--------C----
Q 015435          319 KAMADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTGL----NSEQV-AFMTKEYHIYMTSD--------G----  380 (407)
Q Consensus       319 ~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~l~~~gi~~~~g--------g----  380 (407)
                      ++.+++++++++++.+.|++. +.   +.+..+.+++|.|+.+    +.+.+ ..+++++||.+.+|        +    
T Consensus       302 ~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~i  378 (407)
T 2zc0_A          302 EGALLGYKEKRDIMLKALENHLPN---AEFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAI  378 (407)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHCTT---SCBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCC---CEEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeE
Confidence            778888999999999999874 32   5666677888888755    44444 45555459999874        2    


Q ss_pred             eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          381 RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ||+++..+++++++++++|+++++++
T Consensus       379 Ris~~~~~~~~i~~~~~~l~~~l~~~  404 (407)
T 2zc0_A          379 RLNFSRPSKEEIPIGIKKLAKLYKEK  404 (407)
T ss_dssp             EEECSSSCTTHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence            99998656899999999999998754

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=4.8e-41  Score=324.15  Aligned_cols=367  Identities=13%  Similarity=0.078  Sum_probs=272.2

Q ss_pred             cccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK   86 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~   86 (407)
                      ..|+...++..+ ........  ..++|||+.|.+   +. +.++.+.+++.+.+.........|++..|..++++++++
T Consensus        16 ~~~~~~~~~~~~-~~~~~~~~--~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~   88 (429)
T 1yiz_A           16 PKRYQGSTKSVW-VEYIQLAA--QYKPLNLGQGFP---DY-HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSK   88 (429)
T ss_dssp             SSSCCCCTTCHH-HHHHHHHH--HHCCEECCSSSC---SS-CCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHH
T ss_pred             hHHhhhCCchHH-HHHHHHhc--cCCEEEecCCCC---CC-CCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHH
Confidence            355555554443 33322222  247999999975   22 335566666666664111134678877899999999999


Q ss_pred             HHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCC------
Q 015435           87 LILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA------  159 (407)
Q Consensus        87 ~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~------  159 (407)
                      ++....+..++++ +|++  |+|+++++.++++.+  +.+||+|+++.|+|..+...++..|.+++.+|+..+.      
T Consensus        89 ~l~~~~g~~~~~~~~v~~--~~g~~~a~~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  164 (429)
T 1yiz_A           89 LYSQLVDRTINPMTEVLV--TVGAYEALYATIQGH--VDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTIS  164 (429)
T ss_dssp             HHHHHHTSCCCTTTSEEE--ESHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEE
T ss_pred             HHHHHhCCCCCCcCCEEE--ecChHHHHHHHHHHh--cCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCccccccccc
Confidence            9843223334567 9999  999999999995443  6799999999999999999999999999999985321      


Q ss_pred             --CCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435          160 --TRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM  237 (407)
Q Consensus       160 --~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~  237 (407)
                        ++.+|++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..
T Consensus       165 ~~~~~~d~~~l~~~l~--~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~  239 (429)
T 1yiz_A          165 SADWVLDNNELEALFN--EKTKMIII-NTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFE--HIRICT  239 (429)
T ss_dssp             GGGCBCCHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSC--CCCGGG
T ss_pred             ccCcccCHHHHHHHhc--cCceEEEE-CCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCC--CcChhh
Confidence              46789999999886  55667666 799999999999999999999999999999999999998875421  112211


Q ss_pred             HHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC-----hhhHH
Q 015435          238 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD-----STMYK  312 (407)
Q Consensus       238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~  312 (407)
                      +....+.++++.|+||.++++|+|+||+  +++ ++    +.+.+........++++.+.|.++..+++.     ..   
T Consensus       240 ~~~~~~~~~~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~---  309 (429)
T 1yiz_A          240 LPGMWERTITIGSAGKTFSLTGWKIGWA--YGP-EA----LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKS---  309 (429)
T ss_dssp             STTTGGGEEEEEEHHHHHTCGGGCCEEE--ESC-HH----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTS---
T ss_pred             ccCCcCceEEEecchhccCCCCcceEEE--EeC-HH----HHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccc---
Confidence            2123457899999999999999999999  565 44    444444444444557888889888888875     21   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC----------------HH-HHHHhHhhccEE
Q 015435          313 EWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN----------------SE-QVAFMTKEYHIY  375 (407)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~-~~~~~l~~~gi~  375 (407)
                       +.+++++.+++++++++++.+.|++.+    +.+..+.+|+|.|+.+.                .. +..++++++||.
T Consensus       310 -~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~  384 (429)
T 1yiz_A          310 -PECYFNSISGELMAKRDYMASFLAEVG----MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQ  384 (429)
T ss_dssp             -TTSHHHHHHHHHHHHHHHHHHHHHHHT----CEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEE
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEE
Confidence             124577888999999999999999886    67777778888887542                22 344566678999


Q ss_pred             EcCC-------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          376 MTSD-------------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       376 ~~~g-------------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +.||             +  ||+++. +++++++++++|+++++.
T Consensus       385 v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~  428 (429)
T 1yiz_A          385 GIPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAEILRKWKGS  428 (429)
T ss_dssp             CBCGGGGSCGGGGGGTTTEEEEECCS-CHHHHHHHHHHHHHHSCC
T ss_pred             EeCchHhCCCcccCCCCCeEEEEecC-CHHHHHHHHHHHHHhccC
Confidence            9763             2  999986 889999999999988653

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=6.3e-41  Score=318.82  Aligned_cols=357  Identities=15%  Similarity=0.159  Sum_probs=268.0

Q ss_pred             cccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK   86 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~   86 (407)
                      ..|+...+++.+.. ...+...  .++|||+.|.+   +. +.++.+.+++.+.+.  . ....|.+..|..++|+++++
T Consensus         9 ~~~~~~~~~~~~~~-~~~~~~~--~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~~g~~~l~~~la~   78 (386)
T 1u08_A            9 QSKLPQLGTTIFTQ-MSALAQQ--HQAINLSQGFP---DF-DGPRYLQERLAHHVA--Q-GANQYAPMTGVQALREAIAQ   78 (386)
T ss_dssp             CCSCCCCCCCHHHH-HHHHHHH--TTCEECCCSSC---SS-CCCHHHHHHHHHHHH--T-TCCSCCCTTCCHHHHHHHHH
T ss_pred             chhhhcCCccHHHH-HHHHHhc--CCeEEecCCCC---CC-CCCHHHHHHHHHHHH--h-hccCCCCCCCCHHHHHHHHH
Confidence            45666655554433 3333322  57999999975   22 334556666556554  2 24578877899999999999


Q ss_pred             HHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435           87 LILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF  165 (407)
Q Consensus        87 ~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  165 (407)
                      ++....+..++++ +|++  |+|+++++.++++.+  +.+||+|++++|+|+.+...++..|.+++.++.+ ++++.+|+
T Consensus        79 ~l~~~~g~~~~~~~~v~~--~~g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~  153 (386)
T 1u08_A           79 KTERLYGYQPDADSDITV--TAGATEALYAAITAL--VRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQ-PPHFRVDW  153 (386)
T ss_dssp             HHHHHHSCCCCTTTTEEE--ESSHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECC-TTTCCCCH
T ss_pred             HHHHHhCCCCCCCCCEEE--cCChHHHHHHHHHHh--CCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecC-cccCcCCH
Confidence            9833223334567 9999  999999999995443  6799999999999999999999999999999984 33578999


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++...  .++..+....+++
T Consensus       154 ~~l~~~l~--~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~~~~~~  228 (386)
T 1u08_A          154 QEFAALLS--ERTRLVIL-NTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGH--ASVLAHPQLRERA  228 (386)
T ss_dssp             HHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCC--CCGGGSHHHHTTE
T ss_pred             HHHHHhhc--ccCEEEEE-eCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCC--cChhcccCccCcE
Confidence            99999986  55667666 7999999999999999999999999999999999999988754211  1111111124679


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                      +++.|+||.++++|+|+||+  +++ ++    +.+.+........++++.+.+.++..+++...      +++++.++++
T Consensus       229 i~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~  295 (386)
T 1u08_A          229 VAVSSFGKTYHMTGWKVGYC--VAP-AP----ISAEIRKVHQYLTFSVNTPAQLALADMLRAEP------EHYLALPDFY  295 (386)
T ss_dssp             EEEEEHHHHTTCGGGCCEEE--ECC-HH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCT------HHHHTHHHHH
T ss_pred             EEEecchhhcCCcccceEEE--EcC-HH----HHHHHHHHHHhhccCCChHHHHHHHHHHhCCc------HHHHHHHHHH
Confidence            99999999999999999999  565 44    44444444433345778888888888886432      4577888999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC------CHHHH-HHhHhhccEEEcCC--------C----eEEecC
Q 015435          326 ISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL------NSEQV-AFMTKEYHIYMTSD--------G----RISMAG  386 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~l~~~gi~~~~g--------g----Ris~~~  386 (407)
                      +++++++.+.|++.+    +.+..+.+++|.|+.+      +.+.+ ..+++++||.+.||        +    ||+++.
T Consensus       296 ~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~  371 (386)
T 1u08_A          296 RQKRDILVNALNESR----LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK  371 (386)
T ss_dssp             HHHHHHHHHHTTSSS----CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS
T ss_pred             HHHHHHHHHHHHHCC----CeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC
Confidence            999999999998876    6777778888888744      34444 45666789999764        2    999986


Q ss_pred             CCCCChhHHHHHHHH
Q 015435          387 LSSKTVPHLTDAIHA  401 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~  401 (407)
                       +++++++++++|++
T Consensus       372 -~~~~i~~~~~~l~~  385 (386)
T 1u08_A          372 -KESTLLAAAERLRQ  385 (386)
T ss_dssp             -CHHHHHHHHHHHTT
T ss_pred             -CHHHHHHHHHHHhh
Confidence             88899999998864

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=100.00  E-value=6e-41  Score=322.17  Aligned_cols=373  Identities=16%  Similarity=0.186  Sum_probs=276.6

Q ss_pred             CCCCCchhhhhHhhhh-cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhC
Q 015435           12 RAPEDPILGVTVAYNK-DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILG   90 (407)
Q Consensus        12 ~~~~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~   90 (407)
                      ....+++....+.+.. ...+++|+|+.|.|......+.++.+.+++.+.+.  .....+|++..|..++|+++++++..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~--~~~~~~y~~~~~~~~lr~~la~~~~~   90 (416)
T 1bw0_A           13 GLVFNPIRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAID--SQECNGYFPTVGSPEAREAVATWWRN   90 (416)
T ss_dssp             HTCCCHHHHHHHTCCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHH--TTCSSSCCCTTCCHHHHHHHHHHHHH
T ss_pred             hccccHHHHHHHHHHHhhcCCCeEEecCcCCCcccCCCCCHHHHHHHHHHhh--CCccCCcCCCCCCHHHHHHHHHHHHh
Confidence            3444456655554432 22367999999986210122556666666666665  22346788778999999999999951


Q ss_pred             ------CCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           91 ------ADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        91 ------~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                            ..+..+++++|++  |+|+++++.+++..+  +.+||+|++++|+|..+...++..|.+++.+++..+.++.+|
T Consensus        91 ~~~~~~~~~~~~~~~~v~~--~~g~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d  166 (416)
T 1bw0_A           91 SFVHKEELKSTIVKDNVVL--CSGGSHGILMAITAI--CDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEAD  166 (416)
T ss_dssp             HHCCSTTTGGGCCGGGEEE--ESHHHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEEC
T ss_pred             hhcccccCCCCCCcceEEE--eCChHHHHHHHHHHh--CCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCC
Confidence                  3444456789999  999999999995443  679999999999999999999999999999998533356789


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc--hhHHHHHHHHcC
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA--DAQSVRMFVADG  242 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~--~~~~~~~~~~~~  242 (407)
                      ++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||++||+||+|.++.+++...  ...++..+ ...
T Consensus       167 ~~~l~~~l~--~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~~~  242 (416)
T 1bw0_A          167 LDEIRRLKD--DKTKLLIV-TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF-ETT  242 (416)
T ss_dssp             HHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS-CCS
T ss_pred             HHHHHHHhc--cCCeEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHc-cCC
Confidence            999999886  45566666 7899999999999999999999999999999999999988764200  11111111 223


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecCh-hhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTE-DVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      .++++++|+||.++++|+|+||+  +++++ ++.+.+...+..... ...+++.++|.++..+++...     ..++++.
T Consensus       243 ~~~i~~~s~sK~~~~~Glr~G~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~  314 (416)
T 1bw0_A          243 VPRVILGGTAKNLVVPGWRLGWL--LYVDPHGNGPSFLEGLKRVGM-LVCGPCTVVQAALGEALLNTP-----QEHLDQI  314 (416)
T ss_dssp             CCEEEEEESTTTTSCGGGCCEEE--EEECTTCSCHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHSSC-----HHHHHHH
T ss_pred             CcEEEEecchhhCCCCCceEEEE--EeeCchhhHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHhccc-----HHHHHHH
Confidence            46899999999999999999999  67765 455555544433221 234778889999988887532     1457778


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC---------CHHH-HHHhHhhccEEEcCC------C--eEE
Q 015435          322 ADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL---------NSEQ-VAFMTKEYHIYMTSD------G--RIS  383 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~l~~~gi~~~~g------g--Ris  383 (407)
                      +++++++++++.+.|++.+.   +.+..+.+++|.|+.+         +... ...+++++||.+.+|      +  ||+
T Consensus       315 ~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis  391 (416)
T 1bw0_A          315 VAKIEESAMYLYNHIGECIG---LAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLT  391 (416)
T ss_dssp             HHHHHHHHHHHHHHHTTSTT---EEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCC---CcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEE
Confidence            88999999999999988732   6666677788887643         3444 455667799999885      2  999


Q ss_pred             ecCCCCCChhHHHHHHHHHHHhh
Q 015435          384 MAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       384 ~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++. +++++++++++|.+++++.
T Consensus       392 ~~~-~~e~l~~~l~~l~~~l~~~  413 (416)
T 1bw0_A          392 TTR-PVEVYREAVERIKAFCQRH  413 (416)
T ss_dssp             CCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             ecC-CHHHHHHHHHHHHHHHHHh
Confidence            974 8889999999999998764

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=3.1e-41  Score=325.02  Aligned_cols=371  Identities=12%  Similarity=0.130  Sum_probs=271.4

Q ss_pred             ccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHH
Q 015435            8 GKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKL   87 (407)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~   87 (407)
                      .++...+++++.++....   .++++|||+.|.+. ..+ ..++.+.+++.+.+........+|.+..|..++|++++++
T Consensus        23 ~~~~~~~~~~~~~~~~~~---~~~~~idl~~g~~~-~~~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~   97 (425)
T 1vp4_A           23 KIGQNMKSSIIREILKFA---ADKDAISFGGGVPD-PET-FPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKL   97 (425)
T ss_dssp             HHHHTCCCCCHHHHTTTT---TSTTCEECCCCSCC-GGG-SCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHH
T ss_pred             hhhhcCCCcHHHHHHHhc---cCCCceeCCCCCCC-ccc-CCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHH
Confidence            344445555555444322   34689999999861 122 2234455555555541111246788888999999999999


Q ss_pred             HhCCCCCC-CCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChh
Q 015435           88 ILGADSPA-IKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQ  166 (407)
Q Consensus        88 ~~~~~~~~-~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  166 (407)
                      +....+.. +++++|++  |+|+++++.+++.  ..+.+||+|+++.|+|.++...++..|.+++.+|.+ ++  ++|++
T Consensus        98 l~~~~g~~~~~~~~v~~--t~G~~~al~~~~~--~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~-~~--~~d~~  170 (425)
T 1vp4_A           98 LERMYGITGLDEDNLIF--TVGSQQALDLIGK--LFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLE-DD--GMDLN  170 (425)
T ss_dssp             HHHHHCCCSCCGGGEEE--EEHHHHHHHHHHH--HHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE-TT--EECHH
T ss_pred             HHhccCCCCCCcccEEE--eccHHHHHHHHHH--HhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccC-CC--CCCHH
Confidence            94322333 45689999  9999999999853  336799999999999999999999999999999984 32  59999


Q ss_pred             hHHHHHHc------CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435          167 GLLEDLRA------APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA  240 (407)
Q Consensus       167 ~l~~~i~~------~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~  240 (407)
                      ++++.+.+      .+++++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+ .
T Consensus       171 ~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~-~  247 (425)
T 1vp4_A          171 VLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGET--VDPIFKI-G  247 (425)
T ss_dssp             HHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCC--CCCHHHH-H
T ss_pred             HHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCC--CcCHHHh-C
Confidence            99999873      1245666556999999999999999999999999999999999999999875431  1233333 2


Q ss_pred             cCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHH
Q 015435          241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKA  320 (407)
Q Consensus       241 ~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  320 (407)
                      ..+++++++|+||.++ +|+|+||+  +++ ++    +.+.+.........+++.++|.++..++++..    +.+++++
T Consensus       248 ~~~~~i~~~s~sK~~~-~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~  315 (425)
T 1vp4_A          248 GPERVVLLNTFSKVLA-PGLRIGMV--AGS-KE----FIRKIVQAKQSADLCSPAITHRLAARYLERYD----LLEQLKP  315 (425)
T ss_dssp             CTTTEEEEEESTTTTC-GGGCEEEE--ECC-HH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSC----HHHHTHH
T ss_pred             CCCCEEEEeccccccc-cccceEEE--eeC-HH----HHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCC----HHHHHHH
Confidence            3467899999999999 99999999  565 44    44444444444445678889999988887541    3356788


Q ss_pred             HHHHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEecCC----CHH-HHHHhHhhccEEEcCC----------C--eE
Q 015435          321 MADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTGL----NSE-QVAFMTKEYHIYMTSD----------G--RI  382 (407)
Q Consensus       321 ~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~l~~~gi~~~~g----------g--Ri  382 (407)
                      .+++++++++++.+.|++. +....+.+..+.+++|.|+.+    +.+ ....+++ +||.+.||          +  ||
T Consensus       316 ~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~g~~f~~~~~~~~~iRi  394 (425)
T 1vp4_A          316 TIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKR-KKVFYVPGRVFKVYDEPSPSMRL  394 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHH-HTEECEEGGGGCTTCCCCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHH-CCCEEECchhhcCCCCCCCeEEE
Confidence            8899999999999999875 200016666677888888855    233 3455555 59999863          2  99


Q ss_pred             EecCCCCCChhHHHHHHHHHHHhh
Q 015435          383 SMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       383 s~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +++..+++++++++++|+++++++
T Consensus       395 s~~~~~~e~i~~~l~~l~~~l~~~  418 (425)
T 1vp4_A          395 SFCLPPDEKIVEGIKRLREVVLEY  418 (425)
T ss_dssp             ECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCHHHHHHHHHHHHHHHHHH
Confidence            998656799999999999988653

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=2.9e-41  Score=320.05  Aligned_cols=338  Identities=14%  Similarity=0.128  Sum_probs=258.3

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCC-ceEEeec
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDN-RVTTVQC  106 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t  106 (407)
                      .+++++|||+.|.+   .. +.++.+.+++.+.+.  .....+|++..|..++|+++++++....+..++++ +|++  |
T Consensus        22 ~~g~~~idl~~~~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~--~   93 (376)
T 2dou_A           22 ERGVGLIDLSIGST---DL-PPPEAPLKALAEALN--DPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALA--L   93 (376)
T ss_dssp             HTTCCCEECSSCCC---CC-CCCHHHHHHHHHHTT--CGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEE--E
T ss_pred             ccCCCEEeccCCCC---CC-CCCHHHHHHHHHHHh--CCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--c
Confidence            34678999999985   22 334555555555554  22356787667899999999999843323334445 9999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecC
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC  186 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~  186 (407)
                      +|+++++.++++.  .+.+||+|+++.|+|.++...++..|.+++.+|.  ++++.+|++++++.+.  ++++++++ ++
T Consensus        94 ~g~~~a~~~~~~~--l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~--~~~~~v~l-~~  166 (376)
T 2dou_A           94 IGSQEGLAHLLLA--LTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVW--REAKVLLL-NY  166 (376)
T ss_dssp             SSHHHHHHHHHHH--HCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHH--HHEEEEEE-CS
T ss_pred             CCcHHHHHHHHHH--hcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhc--cCceEEEE-CC
Confidence            9999999999543  3678999999999999999999999999999988  4556689999999886  45667666 78


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      |+||||.+++.+++++|+++|++||+++|+||+|.++.+++.......   +....+++++++|+||.+|++|+|+||+ 
T Consensus       167 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~---~~~~~~~~i~~~s~sK~~~~~G~r~G~~-  242 (376)
T 2dou_A          167 PNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLA---LPGAKERVVELFSLSKSYNLAGFRLGFA-  242 (376)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGG---STTGGGTEEEEEEHHHHHTCGGGCCEEE-
T ss_pred             CCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhh---cCCCCCcEEEEecchhhcCChhheeEEE-
Confidence            999999999999999999999999999999999999987542111111   1122457899999999999999999999 


Q ss_pred             EeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 015435          267 IVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS  346 (407)
Q Consensus       267 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  346 (407)
                       +++ ++    +.+.+.........+++.+++.++..++++..      +++++.+++++++++++.+.|++.     +.
T Consensus       243 -~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~-----~~  305 (376)
T 2dou_A          243 -LGS-EE----ALARLERVKGVIDFNQYAGVLRMGVEALKTPK------EVVRGYARVYRERALGMAEALKGV-----LS  305 (376)
T ss_dssp             -EEC-HH----HHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCH------HHHHHHHHHHHHHHHHHHHHHTTT-----SE
T ss_pred             -ecC-HH----HHHHHHHHHHhcccCCCHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHHHh-----cC
Confidence             555 44    44444444444455778889999998888632      557788899999999999999775     35


Q ss_pred             cccCCceeEEecCC----CHHH-HHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHH
Q 015435          347 HIIKQIGMFTFTGL----NSEQ-VAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       347 ~~~~~~~~~~~~~~----~~~~-~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +..+.+++|.|+.+    +.+. ...+++ +||.+.+|        +  ||+++. +++++++++++|++++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          306 LLPPRATMYLWGRLPEGVDDLEFGLRLVE-RGVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL  375 (376)
T ss_dssp             ECCCCBSSEEEEECCTTCCHHHHHHHHHH-TTEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred             ccCCCeeEEEEEECCCCCCHHHHHHHHHH-CCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence            55677888888754    3344 445555 59999874        2  999986 8899999999998765

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=4.7e-41  Score=318.59  Aligned_cols=339  Identities=11%  Similarity=0.092  Sum_probs=269.1

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      .++++|||+.|.+   .. +.++.+.+++.+.+.   ....+|++ .+ .++|+++++++....+..+++++|++  |+|
T Consensus        21 ~g~~~idl~~~~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~--t~g   89 (377)
T 3fdb_A           21 YGQGVLPLWVAES---DF-STCPAVLQAITDAVQ---REAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFP--IPD   89 (377)
T ss_dssp             SCTTSEECCSSCC---CS-CCCHHHHHHHHHHHH---TTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEE--ESC
T ss_pred             cCCCeeeecccCC---CC-CCCHHHHHHHHHHHH---cCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEE--eCC
Confidence            4689999999963   33 556677777766665   23567877 77 89999999999544444455689999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      +++++.++++  ..+.+||+|+++.|+|.++...++..|.+++.+|.. + +  +|++++++.+.  ++++++++ ++|+
T Consensus        90 ~~~a~~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~-~--~d~~~l~~~l~--~~~~~v~i-~~p~  160 (377)
T 3fdb_A           90 VVRGLYIAID--HFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDAT-G-G--INLHDVEKGFQ--AGARSILL-CNPY  160 (377)
T ss_dssp             HHHHHHHHHH--HHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECT-T-S--CCHHHHHHHHH--TTCCEEEE-ESSB
T ss_pred             hHHHHHHHHH--HhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCC-C-C--CCHHHHHHHhc--cCCCEEEE-eCCC
Confidence            9999999953  347799999999999999999999999999999983 2 2  99999999998  45677666 8999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCC-CCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEE
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGS-LDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSI  267 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  267 (407)
                      ||||.+++.+++++|+++|++||+++|+||+|.++.+++ ..  ..++..+. ..++++++.|+||.+|++|+|+||+  
T Consensus       161 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~--  235 (377)
T 3fdb_A          161 NPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHT--VAAGVSDT-AASVCITITAPSKAWNIAGLKCAQI--  235 (377)
T ss_dssp             TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCC--CGGGSCHH-HHHHEEEEECSTTTTTCGGGCCEEE--
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCC--cccHHHcc-CCCcEEEEEeChHhccCcchhheEE--
Confidence            999999999999999999999999999999999998865 21  12221111 1457899999999999999999998  


Q ss_pred             eecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcc
Q 015435          268 VCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWS  346 (407)
Q Consensus       268 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~  346 (407)
                      +++++++.+.+    .......+.+++.+++.++..++++..      +++++.+++++++++++.+.|++ .+.   +.
T Consensus       236 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~  302 (377)
T 3fdb_A          236 IFSNPSDAEHW----QQLSPVIKDGASTLGLIAAEAAYRYGT------DFLNQEVAYLKNNHDFLLHEIPKRIPG---AK  302 (377)
T ss_dssp             ECCSHHHHHHH----HHSCHHHHCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHSTT---CE
T ss_pred             EeCCHHHHHHH----HHHHHhhcCCCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHhhCCC---ce
Confidence            57666654444    334333445788899998888887532      55778889999999999999988 432   77


Q ss_pred             cccCCceeEEecCC-----CHHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          347 HIIKQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       347 ~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +..+.++++.|+.+     +.+.+..+++++||.+.||.          ||+++. +++++++++++|+++++++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~~l~~~  376 (377)
T 3fdb_A          303 ITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAKAVSHH  376 (377)
T ss_dssp             ECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHTTC
T ss_pred             EecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence            88888999888744     34567788887899998752          999996 8899999999999998754

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.5e-41  Score=324.33  Aligned_cols=363  Identities=13%  Similarity=0.124  Sum_probs=270.2

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      +.+|+...+++.+....+ +..  ..++|||+.|.+   +. +.++.+.+++.+.+. +  ....|.+..|..++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~-~~~--~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~-~--~~~~y~~~~g~~~l~~~la   72 (411)
T 2o0r_A            3 TVSRLRPYATTVFAEMSA-LAT--RIGAVNLGQGFP---DE-DGPPKMLQAAQDAIA-G--GVNQYPPGPGSAPLRRAIA   72 (411)
T ss_dssp             CCGGGGGGSSCHHHHHHH-HHH--TTTCEESSCSSC---SS-CCCHHHHHHHHHHHH-T--TCCSCCCTTCCHHHHHHHH
T ss_pred             hhhHhHhcCccHHHHHHH-Hhh--cCCeeeccCcCC---CC-CCCHHHHHHHHHHHh-c--CCCCCCCCCCCHHHHHHHH
Confidence            445666666555444433 332  246899999975   22 345566666666664 2  2457888888999999999


Q ss_pred             HHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecC-CCCCc
Q 015435           86 KLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDP-ATRGL  163 (407)
Q Consensus        86 ~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~  163 (407)
                      +++....+..++++ +|++  |+|+++++.+++..  .+.+||+|+++.|+|.++...++..|.+++.+|+..+ .++.+
T Consensus        73 ~~~~~~~g~~~~~~~~v~~--t~g~~~al~~~~~~--~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~  148 (411)
T 2o0r_A           73 AQRRRHFGVDYDPETEVLV--TVGATEAIAAAVLG--LVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFAL  148 (411)
T ss_dssp             HHHHHHHCCCCCTTTSEEE--EEHHHHHHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEEC
T ss_pred             HHHHHHcCCCCCCCceEEE--eCCHHHHHHHHHHH--hcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCC
Confidence            99843333334567 9999  99999999999543  3679999999999999999999999999999998432 24568


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      |++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+....+
T Consensus       149 d~~~l~~~l~--~~~~~v~l-~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~  223 (411)
T 2o0r_A          149 DADALRRAVT--PRTRALII-NSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHAR--HLPLAGFDGMAE  223 (411)
T ss_dssp             CHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC--CCCGGGSTTTGG
T ss_pred             CHHHHHHhhc--cCceEEEE-eCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CcChhhccCCCC
Confidence            9999999986  45666666 799999999999999999999999999999999999998875421  112211111245


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      .++++.|+||.++++|+|+||+  +++ +++.+    .+........++++.+.+.++..+++...      +++++.++
T Consensus       224 ~~i~~~s~sK~~~~~G~r~G~~--~~~-~~~~~----~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~  290 (411)
T 2o0r_A          224 RTITISSAAKMFNCTGWKIGWA--CGP-AELIA----GVRAAKQYLSYVGGAPFQPAVALALDTED------AWVAALRN  290 (411)
T ss_dssp             GEEEEEEHHHHTTCTTTCEEEE--ECC-HHHHH----HHHHHHHHHTSCCCTTHHHHHHHHHHHCH------HHHHHHHH
T ss_pred             CEEEEeechhhcCCccceEEEE--eeC-HHHHH----HHHHHHhhccCCCChHHHHHHHHHHhCCh------HHHHHHHH
Confidence            7899999999999999999999  454 55444    34433333344667778888887776432      55778889


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC------CHHH-HHHhHhhccEEEcCC-----------------
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL------NSEQ-VAFMTKEYHIYMTSD-----------------  379 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~l~~~gi~~~~g-----------------  379 (407)
                      +++++++++.+.|++.+    +.+..+.+++|.|+.+      +... ...+++++||.+.+|                 
T Consensus       291 ~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~  366 (411)
T 2o0r_A          291 SLRARRDRLAAGLTEIG----FAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADV  366 (411)
T ss_dssp             HHHHHHHHHHHHHHHHT----CEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CC
T ss_pred             HHHHHHHHHHHHHHHcC----CEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccC
Confidence            99999999999999886    6777788888888754      3433 455666789998652                 


Q ss_pred             C----eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          380 G----RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       380 g----Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +    ||+++. +++++++++++|++++++
T Consensus       367 ~~~~iRis~~~-~~e~i~~~~~~l~~~~~~  395 (411)
T 2o0r_A          367 WNHLVRFTFCK-RDDTLDEAIRRLSVLAER  395 (411)
T ss_dssp             GGGCEEEECCS-CHHHHHHHHHHHGGGGC-
T ss_pred             CCCeEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence            2    999986 888999999999887643

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=100.00  E-value=2.2e-40  Score=317.23  Aligned_cols=366  Identities=13%  Similarity=0.089  Sum_probs=272.0

Q ss_pred             cccccCCCCCchhh--hhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            7 FGKIVRAPEDPILG--VTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         7 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      .+|+.+.+.+.+..  ..+.+.. +++++|||+.|.+.. ...+.++.+.+++.+.+.  . ....|++..|..++|+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~i~l~~~~~~~-~~~~~~~~v~~a~~~~~~--~-~~~~y~~~~g~~~l~~~l   87 (406)
T 1xi9_A           13 SKRALSVEYAIRDVVLPARELEK-KGIKVIRLNIGDPVK-FDFQPPEHMKEAYCKAIK--E-GHNYYGDSEGLPELRKAI   87 (406)
T ss_dssp             CHHHHTCCC-------CHHHHHH-TTCCCEECCCCCGGG-TTCCCCHHHHHHHHHHHH--T-TCCSCCCTTCCHHHHHHH
T ss_pred             HHHHhcCChhHHHHHHHHHHHHH-cCCCEEEecCCCCCc-CCCCCCHHHHHHHHHHHh--c-CCCCCCCCCCcHHHHHHH
Confidence            34555554444333  3333333 357899999997511 022445566666666664  2 234688778999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      ++++....+..+++++|++  |+|+++++.+++..+  +.+||+|++++|+|.++...++..|.+++.+|.+.+.++.+|
T Consensus        88 a~~l~~~~g~~~~~~~v~~--t~g~~~al~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d  163 (406)
T 1xi9_A           88 VEREKRKNGVDITPDDVRV--TAAVTEALQLIFGAL--LDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPD  163 (406)
T ss_dssp             HHHHHHHHCCCCCGGGEEE--ESHHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEEC
T ss_pred             HHHHHHhcCCCCCHHHEEE--cCChHHHHHHHHHHh--CCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCC
Confidence            9999543344456689999  999999999995443  779999999999999999999999999999998532456789


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++.   ..++..+ + .+.
T Consensus       164 ~~~l~~~l~--~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~-~-~~~  235 (406)
T 1xi9_A          164 IDDIRKKIT--DRTKAIAV-INPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE---HISPGSL-T-KDV  235 (406)
T ss_dssp             HHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC---CCCHHHH-C-SSS
T ss_pred             HHHHHHhhC--cCceEEEE-ECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC---CCCHHHc-C-CCc
Confidence            999999987  45566666 79999999999999999999999999999999999999887432   2233333 2 566


Q ss_pred             -EEEEEecCccccccCCCcceeEEe-ecCh----hhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435          245 -CLVAQSYAKNMGLYGERVGALSIV-CKTE----DVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLEL  318 (407)
Q Consensus       245 -~i~~~s~sK~~~~~G~r~G~~~~v-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  318 (407)
                       +++++|+||.++++|+|+||+  + +.++    ++.+.+    ....... .+++.+.+.++..+++...      +.+
T Consensus       236 ~~i~~~s~sK~~~~~G~r~G~~--~~~~~~~~~~~l~~~l----~~~~~~~-~~~~~~~~~a~~~~l~~~~------~~~  302 (406)
T 1xi9_A          236 PVIVMNGLSKVYFATGWRLGYM--YFVDPENKLSEVREAI----DRLARIR-LCPNTPAQFAAIAGLTGPM------DYL  302 (406)
T ss_dssp             CEEEEEESTTTTCCGGGCCEEE--EEECTTCTTHHHHHHH----HHHHHHT-CCSCSHHHHHHHHHHHSCC------HHH
T ss_pred             eEEEEeccccccCCCccEEEEE--EEecCchhHHHHHHHH----HHHHHhh-cCCCHHHHHHHHHHHhCCc------HHH
Confidence             899999999999999999999  4 1445    544443    3333332 4778888988888885332      346


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC------CCHHHH-HHhHhhccEEEcCC--------C--e
Q 015435          319 KAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG------LNSEQV-AFMTKEYHIYMTSD--------G--R  381 (407)
Q Consensus       319 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~l~~~gi~~~~g--------g--R  381 (407)
                      ++.+++++++++++.+.|++.+.   +.+..+.++++.|+.      .+.+.+ ..+++++||.+.++        +  |
T Consensus       303 ~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lR  379 (406)
T 1xi9_A          303 KEYMKKLKERRDYIYKRLNEIPG---ISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFR  379 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTT---EECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCC---CeeecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEE
Confidence            77888999999999999998732   677777888888853      344444 45665789999875        2  9


Q ss_pred             EEecCCCCCChhHHHHHHHHHHHhh
Q 015435          382 ISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       382 is~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |+++ .+++++++++++|+++++++
T Consensus       380 is~~-~~~~~i~~~~~~l~~~l~~~  403 (406)
T 1xi9_A          380 AVFL-PPIEILEEAMDRFEKFMKER  403 (406)
T ss_dssp             EECC-SCHHHHHHHHHHHHHHHHHC
T ss_pred             EEec-CCHHHHHHHHHHHHHHHHHH
Confidence            9998 58899999999999998753

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=3.8e-40  Score=315.85  Aligned_cols=362  Identities=15%  Similarity=0.166  Sum_probs=277.0

Q ss_pred             ccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      |.+|+...+++++.++...+.  ...++++|||+.|.+   .. +.++.+.+++ +.+.  . ....|.+..|..+++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~---~~-~~~~~v~~a~-~~l~--~-~~~~y~~~~g~~~l~~~   87 (409)
T 2gb3_A           16 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQP---DL-KTPEVFFERI-YENK--P-EVVYYSHSAGIWELREA   87 (409)
T ss_dssp             CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCC---CS-CCCTHHHHHH-HHTC--C-SSCCCCCTTCCHHHHHH
T ss_pred             HHHHhhcCCccHHHHHHHHHHHHHhcCCCEEeccCCCC---CC-CCCHHHHHHH-HHHh--c-CCCCCCCCCCcHHHHHH
Confidence            356777777777777766544  234678999999985   22 3455666666 6554  2 24568888899999999


Q ss_pred             HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      +++++....+..++++++++  |+|+++++.+++..  .+.+||+|+++.|+|.++...++..|.+++.+|...+.++.+
T Consensus        88 la~~~~~~~g~~~~~~~v~~--~~g~t~a~~~~~~~--~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~  163 (409)
T 2gb3_A           88 FASYYKRRQRVDVKPENVLV--TNGGSEAILFSFAV--IANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI  163 (409)
T ss_dssp             HHHHHHHTSCCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC
T ss_pred             HHHHHHHHhCCCCCHHHEEE--eCCHHHHHHHHHHH--hCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc
Confidence            99999655555566789999  99999999999544  377999999999999999999999999999999842233444


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                       ++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||++||+||+|..+.+++.   ..+.  +....+
T Consensus       164 -~~~l~~~l~--~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~---~~~~--~~~~~~  234 (409)
T 2gb3_A          164 -PQNLESFIN--ERTKGIVL-SNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE---FASA--LSIESD  234 (409)
T ss_dssp             -CTTGGGGCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCG--GGSCCT
T ss_pred             -HHHHHHhhC--cCCeEEEE-CCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC---CCCc--cccCCC
Confidence             888888876  45566666 89999999999999999999999999999999999999887541   1111  112245


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      .+++++|+||.++++|+|+||+  +++++++.+.    +......+. +++.+.+.++..+++...      +++++.++
T Consensus       235 ~~i~~~s~sK~~g~~G~r~G~~--~~~~~~l~~~----l~~~~~~~~-~~~~~~~~a~~~~l~~~~------~~~~~~~~  301 (409)
T 2gb3_A          235 KVVVIDSVSKKFSACGARVGCL--ITRNEELISH----AMKLAQGRL-APPLLEQIGSVGLLNLDD------SFFDFVRE  301 (409)
T ss_dssp             TEEEEEESTTTTTCGGGCCEEE--ECSCHHHHHH----HHHHHHHSC-CCCHHHHHHHHHHHTCCH------HHHHHHHH
T ss_pred             CEEEEecchhccCCccceEEEE--EECcHHHHHH----HHHHHhccC-CCCHHHHHHHHHHHhccH------HHHHHHHH
Confidence            7899999999999999999999  5764354444    444444444 778888998888886532      45778888


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCccc-ccCCceeEEecCC---CHHHH-HHhHhh-----ccEEEcCC-----------C--
Q 015435          324 RIISMRQQLFDALSARGTPGDWSH-IIKQIGMFTFTGL---NSEQV-AFMTKE-----YHIYMTSD-----------G--  380 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~-~~~l~~-----~gi~~~~g-----------g--  380 (407)
                      +++++++++.+.|++.+    +.+ ..+.++++.|+.+   +.+.+ ..++++     +||.+.++           +  
T Consensus       302 ~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~i  377 (409)
T 2gb3_A          302 TYRERVETVLKKLEEHG----LKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEI  377 (409)
T ss_dssp             HHHHHHHHHHHHHHHTT----CCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEE
T ss_pred             HHHHHHHHHHHHHHHcC----ceeeeCCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEE
Confidence            99999999999999886    666 6677888888754   45544 455555     59999763           2  


Q ss_pred             eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          381 RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ||+++ .+++++++++++|+++++++
T Consensus       378 Ris~~-~~~e~i~~~~~~l~~~l~~~  402 (409)
T 2gb3_A          378 RIACV-LEKDLLSRAIDVLMEGLKMF  402 (409)
T ss_dssp             EEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeC-CCHHHHHHHHHHHHHHHHHh
Confidence            99998 48899999999999998753

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=100.00  E-value=7.1e-40  Score=316.51  Aligned_cols=348  Identities=18%  Similarity=0.221  Sum_probs=266.4

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc----------ccccCCCCCCcHHHHHHHHHHHhC--CCCCCCCC
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS----------RVKEYLPIVGLVDFNKLSAKLILG--ADSPAIKD   98 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~y~~~~g~~~l~~~~a~~~~~--~~~~~~~~   98 (407)
                      ...|+|+.+.      ++.+.+.+.+.+........          ...+|.+..|.+++|+++++++..  ..+..+++
T Consensus        38 ~~~i~lg~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~  111 (435)
T 3piu_A           38 NGIIQMGLAE------NQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP  111 (435)
T ss_dssp             TSBEECSSCC------CCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG
T ss_pred             CCeEEecccc------ccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCH
Confidence            4677777653      25556666666655431111          115698899999999999999952  22234556


Q ss_pred             CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCceeeEEEeecCCCCCcChhhHHHHHHcC--
Q 015435           99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--  175 (407)
Q Consensus        99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--  175 (407)
                      ++|++  |+|+++++.+++..  .+.+||.|+++.|+|.++...+. ..|.+++.++.+++.++.+|++++++++.+.  
T Consensus       112 ~~v~~--~~gg~~a~~~~~~~--l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  187 (435)
T 3piu_A          112 NHLVL--TAGATSANETFIFC--LADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEK  187 (435)
T ss_dssp             GGEEE--EEHHHHHHHHHHHH--HCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHH
T ss_pred             HHEEE--cCChHHHHHHHHHH--hcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHh
Confidence            89999  99999999999533  47799999999999999999888 7999999999854445678999999998741  


Q ss_pred             --CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc---------CCc
Q 015435          176 --PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD---------GGE  244 (407)
Q Consensus       176 --~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~---------~~~  244 (407)
                        .+++++++ ++|+||||.+++.+++++|+++|++||++||+||+|.++.+.+.  ...++..+...         .++
T Consensus       188 ~~~~~~~v~i-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~  264 (435)
T 3piu_A          188 RNLRVKGVLV-TNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVMEVLKDRNCDENSEVWQR  264 (435)
T ss_dssp             TTCCEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHHHHHHC-------CGGGG
T ss_pred             cCCCeEEEEE-cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcCHHHhccccccccccCCCCC
Confidence              24556555 89999999999999999999999999999999999999877643  22233333332         567


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      ++++.|+||.+|++|+|+||+  +++++++.+.+    .....  ..+.+.+.+.++..++.+...   +.+++++.+++
T Consensus       265 ~i~i~s~sK~~g~~G~r~G~~--~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~  333 (435)
T 3piu_A          265 VHVVYSLSKDLGLPGFRVGAI--YSNDDMVVAAA----TKMSS--FGLVSSQTQHLLSAMLSDKKL---TKNYIAENHKR  333 (435)
T ss_dssp             EEEEEESSSSSCCGGGCEEEE--EESCHHHHHHH----HHHGG--GSCCCHHHHHHHHHHHHCHHH---HHHHHHHHHHH
T ss_pred             EEEEEeeecccCCCceeEEEE--EeCCHHHHHHH----HHHhh--cCCCCHHHHHHHHHHhcChHH---HHHHHHHHHHH
Confidence            899999999999999999999  67666544433    33322  236778888888888887642   13456788899


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCH-----------HHHHHhHhhccEEEcCC--------C--eEE
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNS-----------EQVAFMTKEYHIYMTSD--------G--RIS  383 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~~~~g--------g--Ris  383 (407)
                      ++++++++.+.|++.+    +.+..+.+|+|.|+.+..           +....+++++||.+.||        +  ||+
T Consensus       334 ~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~  409 (435)
T 3piu_A          334 LKQRQKKLVSGLQKSG----ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVC  409 (435)
T ss_dssp             HHHHHHHHHHHHHTTT----CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEE
T ss_pred             HHHHHHHHHHHHHhcC----CcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEE
Confidence            9999999999999887    777888888999986632           34556677779999874        1  999


Q ss_pred             ecCCCCCChhHHHHHHHHHHHhh
Q 015435          384 MAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       384 ~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++..+++++++++++|+++++++
T Consensus       410 ~~~~~~e~i~~~l~~l~~~l~~~  432 (435)
T 3piu_A          410 FANLPERTLDLAMQRLKAFVGEY  432 (435)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             eeCCCHHHHHHHHHHHHHHHHHH
Confidence            97558899999999999998764

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=100.00  E-value=5.1e-40  Score=313.72  Aligned_cols=364  Identities=18%  Similarity=0.182  Sum_probs=270.3

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      +..|+...+.+.+.......   .++++|||+.|.+ +..+ ..++.+.+++.+.+.+......+|.+..|..++|++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~g~~-~~~~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la   84 (397)
T 2zyj_A           10 FGKGAGRIQASTIRELLKLT---QRPGILSFAGGLP-APEL-FPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVA   84 (397)
T ss_dssp             SCGGGGGCCCCHHHHHHHHH---TSTTCEEESSCCC-CGGG-CCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHH
T ss_pred             hhhhhcccCchHHHHHHhhc---cCCCceecCCCCC-Cchh-CCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHH
Confidence            44566555555555544432   2468999999975 1122 22334555555555411112467888789999999999


Q ss_pred             HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435           86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF  165 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  165 (407)
                      +++ +     +++++|++  |+|+++++.++++.  .+.+||+|+++.|+|.++...++..|.+++.+|.+ ++  ++|+
T Consensus        85 ~~~-g-----~~~~~v~~--~~g~~~al~~~~~~--~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~--~~d~  151 (397)
T 2zyj_A           85 EWI-G-----VRPEEVLI--TTGSQQALDLVGKV--FLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAG-EE--GPDL  151 (397)
T ss_dssp             HHH-T-----SCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEE-TT--EECH
T ss_pred             HHh-C-----CChhhEEE--eccHHHHHHHHHHH--hCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcC-CC--CCCH
Confidence            999 4     33579999  99999999998543  36799999999999999999999999999999984 32  4999


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc--CC
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD--GG  243 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~--~~  243 (407)
                      +++++.+.+. ++++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+...  .+
T Consensus       152 ~~l~~~l~~~-~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~  228 (397)
T 2zyj_A          152 DALEEVLKRE-RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEAR--LPSLFELAREAGYP  228 (397)
T ss_dssp             HHHHHHHHHC-CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCC--CCCHHHHHHHHTCC
T ss_pred             HHHHHHHhhc-CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCC--CCchhhhCcccCCC
Confidence            9999999742 46676666999999999999999999999999999999999999999875421  1223333222  16


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ++++++|+||.++ +|+|+||+  +++ ++    +.+.+.........+++.+++.++..++++..    | +++++.++
T Consensus       229 ~~i~~~s~sK~~~-~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~  295 (397)
T 2zyj_A          229 GVIYLGSFSKVLS-PGLRVAFA--VAH-PE----ALQKLVQAKQGADLHTPMLNQMLVHELLKEGF----S-ERLERVRR  295 (397)
T ss_dssp             CEEEEEESTTTTC-GGGCCEEE--ECC-HH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTH----H-HHHHHHHH
T ss_pred             eEEEEeccccccc-ccceeEEE--ecC-HH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCC----H-HHHHHHHH
Confidence            7899999999999 99999999  565 44    44444444334445678889999998888652    3 55778889


Q ss_pred             HHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCC----------C--eEEecC
Q 015435          324 RIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSD----------G--RISMAG  386 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g----------g--Ris~~~  386 (407)
                      +++++++++.+.|++. +.  .+.+..+.+++|.|+.+    +.+.+.+.|.++||.+.+|          +  ||+++.
T Consensus       296 ~~~~~~~~l~~~L~~~~~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~  373 (397)
T 2zyj_A          296 VYREKAQAMLHALDREVPK--EVRYTRPKGGMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYAT  373 (397)
T ss_dssp             HHHHHHHHHHHHHHHHSCT--TSEECCCSBSSEEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSS
T ss_pred             HHHHHHHHHHHHHHHHCCC--CeEEccCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCC
Confidence            9999999999999874 20  16666677888888755    4555544444569999874          2  999986


Q ss_pred             CCCCChhHHHHHHHHHHHh
Q 015435          387 LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+++++++++++|++++++
T Consensus       374 ~~~~~i~~~~~~l~~~l~~  392 (397)
T 2zyj_A          374 LDREGIAEGVRRLGRALKG  392 (397)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            5678999999999998865

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=1.7e-40  Score=314.05  Aligned_cols=350  Identities=13%  Similarity=0.179  Sum_probs=268.4

Q ss_pred             ccccCCCCCchhhhhHhhhh--cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            8 GKIVRAPEDPILGVTVAYNK--DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      +|+...++++++++.....+  ..++++|||+.|.+   .. +.++.+.+++.+.+.  . ...+|++..|..++|++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~~~~~~l~~~la   76 (370)
T 2z61_A            4 KRLLNFESFEVMDILALAQKLESEGKKVIHLEIGEP---DF-NTPKPIVDEGIKSLK--E-GKTHYTDSRGILELREKIS   76 (370)
T ss_dssp             HHHHHCCCCTTHHHHHHHHHHHHTTCCCEECCCCSC---SS-CCCHHHHHHHHHHHH--T-TCCSCCCTTCCHHHHHHHH
T ss_pred             hhhhhccccHHHHHHHHHHHHHhcCCCEEEccCCCC---CC-CCCHHHHHHHHHHHH--c-CccCCCCCCCCHHHHHHHH
Confidence            45555666777776654442  24678999999985   22 235566666666664  2 2456877789999999999


Q ss_pred             HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435           86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF  165 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  165 (407)
                      +++....+..+++++|++  |+|+++++.++++.+  +.+||+|++++|+|..+...++..|.+++.+|        +|+
T Consensus        77 ~~~~~~~g~~~~~~~v~~--~~g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~  144 (370)
T 2z61_A           77 ELYKDKYKADIIPDNIII--TGGSSLGLFFALSSI--IDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTV  144 (370)
T ss_dssp             HHHHHHSSCCCCGGGEEE--ESSHHHHHHHHHHHH--CCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSH
T ss_pred             HHHHHHhCCCCChhhEEE--CCChHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCH
Confidence            999544454566789999  999999999995443  77999999999999999999999999998885        689


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +++++.+.  ++++++++ ++|+||||.+++.+    |+++|++||+++|+||+|..+.+++..   .++..+....+++
T Consensus       145 ~~l~~~l~--~~~~~v~~-~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~~---~~~~~~~~~~~~~  214 (370)
T 2z61_A          145 ESLEEALS--DKTKAIII-NSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGKC---YSAIEFDENLEKT  214 (370)
T ss_dssp             HHHHHHCC--SSEEEEEE-ESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSCC---CCGGGTCTTCSSE
T ss_pred             HHHHHhcc--cCceEEEE-cCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCCC---cCHHHccCCCCcE
Confidence            99999886  45566666 89999999999977    888899999999999999998875421   1221121234678


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC-hhhHHhHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD-STMYKEWTLELKAMADR  324 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~  324 (407)
                      ++++|+||.++++|+|+||+  +++ ++    +.+.+.........+++.+.+.++..+++. .      .+++++.+++
T Consensus       215 i~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~  281 (370)
T 2z61_A          215 ILINGFSKLYAMTGWRIGYV--ISN-DE----IIEAILKLQQNLFISAPTISQYAALKAFEKET------EREINSMIKE  281 (370)
T ss_dssp             EEEEESTTTTTCGGGCCEEE--ECC-HH----HHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH------HHHHHHHHHH
T ss_pred             EEEecChhccCCccceEEEE--EEC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhccC------HHHHHHHHHH
Confidence            99999999999999999999  565 34    444454444444557888889888877764 2      2557788899


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC--CHHHH-HHhHhhccEEEcCC--------C--eEEecCCCCCC
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL--NSEQV-AFMTKEYHIYMTSD--------G--RISMAGLSSKT  391 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~l~~~gi~~~~g--------g--Ris~~~~~~e~  391 (407)
                      ++++++++.+.|++.+    +.+..+.++++.|+.+  +.+.+ ..+++++||.+.+|        +  ||+++. ++++
T Consensus       282 ~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~-~~~~  356 (370)
T 2z61_A          282 FDRRRRLVLKYVKDFG----WEVNNPIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYAN-SYEN  356 (370)
T ss_dssp             HHHHHHHHHHHHHHTT----CBCCCCCBTTEECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCS-CHHH
T ss_pred             HHHHHHHHHHHHHHcC----CeecCCCcceEEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeC-CHHH
Confidence            9999999999999886    6767788899998876  45444 45555789999874        2  999995 8899


Q ss_pred             hhHHHHHHHHHHH
Q 015435          392 VPHLTDAIHAAVT  404 (407)
Q Consensus       392 i~~~~~~l~~~l~  404 (407)
                      +++++++|+++++
T Consensus       357 i~~~~~~l~~~l~  369 (370)
T 2z61_A          357 IKEGLERIKEFLN  369 (370)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=100.00  E-value=1.3e-40  Score=321.48  Aligned_cols=341  Identities=15%  Similarity=0.187  Sum_probs=258.1

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc--cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ--SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      .++++|||++|.+   +. +.|+.+++++.+.+....  ....+|++..|.+++++++++++..  +..+++++|++  |
T Consensus        54 ~~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~--t  125 (432)
T 3ei9_A           54 PDAQVISLGIGDT---TE-PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFV--S  125 (432)
T ss_dssp             TTCCCEECSSCCC---CS-CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEE--E
T ss_pred             CCCCeEEccCCCC---CC-CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEE--C
Confidence            4568999999975   43 677777777777664111  2335788888999999999999852  34456789999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc------------eeeEEEeecCCCCCcChhhHHHHHHc
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL------------SVKTYRYYDPATRGLNFQGLLEDLRA  174 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~------------~~~~v~~~~~~~~~~d~~~l~~~i~~  174 (407)
                      +|+++++.++   ...+.+||.|++++|+|.++...++..|.            +++.++++++.++..|+++       
T Consensus       126 ~G~~~al~~l---~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------  195 (432)
T 3ei9_A          126 DGAKCDISRL---QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-------  195 (432)
T ss_dssp             SCHHHHHHHH---HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-------
T ss_pred             CChHHHHHHH---HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-------
Confidence            9999999875   34578999999999999999999888774            6788888433333444432       


Q ss_pred             CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435          175 APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN  254 (407)
Q Consensus       175 ~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
                      .++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++..   .++..+....+++++++||||.
T Consensus       196 ~~~~~~v~l-~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~---~~~~~~~~~~~~~i~~~S~SK~  271 (432)
T 3ei9_A          196 VGRTDIIFF-CSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNP---RSIFEIPGAEEVAMETASFSNY  271 (432)
T ss_dssp             CCCCSEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCC---SSGGGSTTGGGTEEEEEESHHH
T ss_pred             CCCCCEEEE-eCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCC---CChhhcCCCCCeEEEEecchhc
Confidence            256778777 799999999999999999999999999999999999999876421   2222222234678999999999


Q ss_pred             ccccCCCcceeEEeecChhh---HHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 015435          255 MGLYGERVGALSIVCKTEDV---ASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQ  331 (407)
Q Consensus       255 ~~~~G~r~G~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (407)
                      +|++|+|+||+  +++++..   ...+...+.......+.+++.++|.++..++.+..     .+++++.++++++++++
T Consensus       272 ~g~~G~r~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~  344 (432)
T 3ei9_A          272 AGFTGVRLGWT--VIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG-----LEAMHKVIGFYKENTNI  344 (432)
T ss_dssp             HCTTTTCCEEE--ECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred             cCCcccceEEE--EEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHH
Confidence            99999999999  5664321   00012333333333445788899999888887432     14577888999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCceeEEecCC---CH-HHHHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHH
Q 015435          332 LFDALSARGTPGDWSHIIKQIGMFTFTGL---NS-EQVAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTD  397 (407)
Q Consensus       332 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~  397 (407)
                      +.+.|++.+    +.+..+.+++|+|+.+   +. +++..+++++||.+.||        +  ||++.. ++++++++++
T Consensus       345 l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~  419 (432)
T 3ei9_A          345 IIDTFTSLG----YDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG-HRENILEACR  419 (432)
T ss_dssp             HHHHHHHTT----CCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHH
T ss_pred             HHHHHHHCC----ceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC-CHHHHHHHHH
Confidence            999999887    6777777788888866   33 45667788789999875        1  999876 8899999999


Q ss_pred             HHHHHH
Q 015435          398 AIHAAV  403 (407)
Q Consensus       398 ~l~~~l  403 (407)
                      +|++--
T Consensus       420 rl~~~~  425 (432)
T 3ei9_A          420 RFKQLY  425 (432)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998754

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=100.00  E-value=4.1e-40  Score=317.04  Aligned_cols=348  Identities=15%  Similarity=0.124  Sum_probs=262.1

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHH-HHHhccccccccC-CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAE-QLLVNDQSRVKEY-LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y-~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      ...|||+.|.|.. ...|.++.+.+++. +++..+.....+| .+..|.+++|+++++++ +     +++++|++  |+|
T Consensus        25 ~~~i~l~~g~p~~-~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~-~-----~~~~~i~~--t~G   95 (423)
T 3ez1_A           25 GLNLNMQRGQPAD-ADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYL-D-----VKAENVLV--WNN   95 (423)
T ss_dssp             TCCEESCCCCCCH-HHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHT-T-----SCGGGEEE--CSS
T ss_pred             CceEecCCCCCCh-HhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHh-C-----CChhhEEE--eCC
Confidence            5789999998611 11244545555553 2332122234779 88899999999999998 3     34589999  999


Q ss_pred             cccHHH--HHHHHHHhhc--C---------CCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435          109 GTGSLR--VGAEFLARHY--H---------QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA  175 (407)
Q Consensus       109 ~t~a~~--~~~~~~~~~~--~---------gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~  175 (407)
                      +++++.  +++  ...+.  +         ||+|+++.|+|..+...++..|.+++.+|++ +  .++|++++++++.+.
T Consensus        96 ~~~al~~~~~~--~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~--~g~d~~~l~~~l~~~  170 (423)
T 3ez1_A           96 SSLELQGLVLT--FALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQ-S--DGPDVDAVERLAGTD  170 (423)
T ss_dssp             CHHHHHHHHHH--HHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEE-T--TEECHHHHHHHHHSC
T ss_pred             cHHHHHHHHHH--HHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCC-C--CCCCHHHHHHHHhhC
Confidence            999997  663  33355  6         5999999999999999999999999999995 3  259999999999633


Q ss_pred             CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHH-HHcCceeeeccccccccCCC-CC---chhHHHHHHHHcCCcEEEEEe
Q 015435          176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLM-RSKGLLPFFDSAYQGFASGS-LD---ADAQSVRMFVADGGECLVAQS  250 (407)
Q Consensus       176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~-~~~~~~li~D~~y~~~~~~~-~~---~~~~~~~~~~~~~~~~i~~~s  250 (407)
                      +++++++++++||||||.+++.+++++|+++| ++||+++|+||+|..+.+.+ ..   .+...+....+..+++++++|
T Consensus       171 ~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  250 (423)
T 3ez1_A          171 PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFAS  250 (423)
T ss_dssp             TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEE
T ss_pred             CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeC
Confidence            56778777789999999999999999999999 99999999999998655432 11   122222222345678999999


Q ss_pred             cCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC--hhhHHhHHHHHHHHHHHHHHH
Q 015435          251 YAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD--STMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       251 ~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~  328 (407)
                      |||. +++|+|+||+  +++     +.+.+.+.........+++.+.|.++..++++  .    .+.+++++.++.++++
T Consensus       251 ~sK~-~~~G~r~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~  318 (423)
T 3ez1_A          251 TSKI-TFAGAGLGFV--ASS-----EDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPG----GLEGLMRDHAAIIAPK  318 (423)
T ss_dssp             STTT-SCSSSSCEEE--EEC-----HHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHHHH
T ss_pred             chhh-ccCCcceEEE--EeC-----HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccc----hHHHHHHHHHHHHHHH
Confidence            9998 6799999999  566     44555566666556678899999999988876  3    2345566667777777


Q ss_pred             HHHHHHHHHh----cCCCCCcccccCCceeEEecCC---CHHHHHHhHhhccEEEcC-C-----------C--eEEecCC
Q 015435          329 RQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTS-D-----------G--RISMAGL  387 (407)
Q Consensus       329 ~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~-g-----------g--Ris~~~~  387 (407)
                      ++.+.+.|.+    .+.  .+.+..|.+++|.|+.+   +.+.+.+++.++||.+.| |           +  ||+++..
T Consensus       319 ~~~l~~~l~~~l~~~~~--~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~  396 (423)
T 3ez1_A          319 FRAVDEVLRAELGEGGE--YATWTLPKGGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP  396 (423)
T ss_dssp             HHHHHHHHHHHHTTTTS--SEEECCCSBSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS
T ss_pred             HHHHHHHHHHhcCcCCC--ceEEeCCCccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC
Confidence            7776666654    330  15666788899998855   566777778889999998 2           1  9999855


Q ss_pred             CCCChhHHHHHHHHHHHhh
Q 015435          388 SSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       388 ~~e~i~~~~~~l~~~l~~~  406 (407)
                      +++++++++++|+++++++
T Consensus       397 ~~~~i~~~~~~l~~~l~~~  415 (423)
T 3ez1_A          397 PVEEVRTAMQVVAACIRLA  415 (423)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            8899999999999998753

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=100.00  E-value=2e-39  Score=312.67  Aligned_cols=348  Identities=15%  Similarity=0.193  Sum_probs=261.0

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhc---------cccccccCCCCCCcHHHHHHHHHHHhCCCCCC--CCCC
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN---------DQSRVKEYLPIVGLVDFNKLSAKLILGADSPA--IKDN   99 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~--~~~~   99 (407)
                      ..+|||+.+..      +.+.+.+.+++.....         .......|++..|..++|+++++++...++..  ++++
T Consensus        36 ~~~i~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~  109 (428)
T 1iay_A           36 NGVIQMGLAEN------QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE  109 (428)
T ss_dssp             TSBEECSSCCC------CSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT
T ss_pred             Cceeeeccccc------hhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChh
Confidence            57899986651      4444455555443210         01124568777889999999999994333322  4568


Q ss_pred             ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCceeeEEEeecCCCCCcChhhHHHHHHc----
Q 015435          100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLSVKTYRYYDPATRGLNFQGLLEDLRA----  174 (407)
Q Consensus       100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~----  174 (407)
                      +|++  |+|+++++.+++..  .+.+||+|+++.|+|..+...+. ..|.+++.+|...+.++.+|++++++.+.+    
T Consensus       110 ~i~~--~~G~~~ai~~~~~~--~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  185 (428)
T 1iay_A          110 RVVM--AGGATGANETIIFC--LADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKS  185 (428)
T ss_dssp             SCEE--EEHHHHHHHHHHHH--HCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHT
T ss_pred             hEEE--ccChHHHHHHHHHH--hCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhc
Confidence            9999  99999999998533  46799999999999999987554 789999999984334567899999998863    


Q ss_pred             CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc-------CCcEEE
Q 015435          175 APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD-------GGECLV  247 (407)
Q Consensus       175 ~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~-------~~~~i~  247 (407)
                      .++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+...       .+++++
T Consensus       186 ~~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~viv  262 (428)
T 1iay_A          186 NIKVKGLIL-TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ--FVSIAEILDEQEMTYCNKDLVHI  262 (428)
T ss_dssp             TCCEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSC--CCCHHHHHTSGGGTTSCTTSEEE
T ss_pred             CCceEEEEE-cCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCC--ccCHHHhccccccccCCCCcEEE
Confidence            124556655 899999999999999999999999999999999999998775321  1122233333       578899


Q ss_pred             EEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 015435          248 AQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIIS  327 (407)
Q Consensus       248 ~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  327 (407)
                      +.|+||.+|++|+|+||+  +++++++.+.+.    ....  .++++.++|.++..++++..+   +.+++++.++++++
T Consensus       263 ~~s~sK~~g~~Glr~G~~--~~~~~~~~~~~~----~~~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~  331 (428)
T 1iay_A          263 VYSLSKDMGLPGFRVGII--YSFNDDVVNCAR----KMSS--FGLVSTQTQYFLAAMLSDEKF---VDNFLRESAMRLGK  331 (428)
T ss_dssp             EEESTTTSSCGGGCEEEE--EESCHHHHHHHH----HHHT--TSCCCHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHH
T ss_pred             EecchhhcCCCCceEEEE--EeCCHHHHHHHH----HHHh--cccCCHHHHHHHHHHhcChHH---HHHHHHHHHHHHHH
Confidence            999999999999999999  676666555443    3322  246788999999999987642   22457788899999


Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCceeEEecCCC----------H-HHHHHhHhhccEEEcCC--------C--eEEecC
Q 015435          328 MRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN----------S-EQVAFMTKEYHIYMTSD--------G--RISMAG  386 (407)
Q Consensus       328 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~l~~~gi~~~~g--------g--Ris~~~  386 (407)
                      +++++.+.|++.+    +.+..+.+|+|.|+.+.          . +....+++++||.+.++        +  ||+++.
T Consensus       332 ~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~  407 (428)
T 1iay_A          332 RHKHFTNGLEVVG----IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFAN  407 (428)
T ss_dssp             HHHHHHHHHHHTT----CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSS
T ss_pred             HHHHHHHHHHhcC----CcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEec
Confidence            9999999999886    66667768888888652          1 23445556569999874        2  999985


Q ss_pred             CCCCChhHHHHHHHHHHHhh
Q 015435          387 LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+++++++++++|++++++.
T Consensus       408 ~~~e~i~~~~~~l~~~l~~~  427 (428)
T 1iay_A          408 MDDGTVDIALARIRRFVGVE  427 (428)
T ss_dssp             SCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHhcc
Confidence            58899999999999998764

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=3.9e-40  Score=312.81  Aligned_cols=355  Identities=19%  Similarity=0.185  Sum_probs=267.1

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      +..|+...+++.+....+....   +++|||+.|.+   +. +.++.+.+++.+.+.  .  ...|++..+..++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~---~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~--~~~y~~~~~~~~l~~~la   71 (381)
T 1v2d_A            3 LHPRTEAAKESIFPRMSGLAQR---LGAVNLGQGFP---SN-PPPPFLLEAVRRALG--R--QDQYAPPAGLPALREALA   71 (381)
T ss_dssp             CCGGGGGC---CHHHHHHHHHH---HTCEECCCCSC---SS-CCCHHHHHHHHHHTT--T--SCSCCCTTCCHHHHHHHH
T ss_pred             hhhhhhhcCccHHHHHHHHHhc---CCeEEecCCCC---CC-CCCHHHHHHHHHHHH--H--hcCCCCCCCCHHHHHHHH
Confidence            4556666666655444443322   46899999975   22 445556666655554  2  346877779999999999


Q ss_pred             HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec-CCCCCcC
Q 015435           86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD-PATRGLN  164 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d  164 (407)
                      +++ +.     ++++|++  |+|+++++.+++..+  +.+||+|++++|+|..+...++..|.+++.++.+. ++++.+|
T Consensus        72 ~~~-~~-----~~~~v~~--~~g~~~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d  141 (381)
T 1v2d_A           72 EEF-AV-----EPESVVV--TSGATEALYVLLQSL--VGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLD  141 (381)
T ss_dssp             HHH-TS-----CGGGEEE--ESSHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECC
T ss_pred             Hhc-CC-----ChhhEEE--cCChHHHHHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcC
Confidence            997 42     2478999  999999999995443  67999999999999999999999999999999841 2347799


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++++++.+.  ++++++++ ++|+||||.+++.+++++|+++|++||+++|+|++|.++.++ ..  ..++..+  ..+.
T Consensus       142 ~~~l~~~l~--~~~~~v~~-~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g-~~--~~~~~~~--~~~~  213 (381)
T 1v2d_A          142 LSALEKALT--PRTRALLL-NTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYG-ER--PRRLREF--APER  213 (381)
T ss_dssp             HHHHHTTCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSS-SC--CCCHHHH--CTTT
T ss_pred             HHHHHHhcC--cCCEEEEE-CCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccC-CC--CCCHHHh--cCCC
Confidence            999999886  45666666 799999999999999999999999999999999999988762 21  1122222  4568


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      ++++.|+||.++++|+|+||+  ++ ++++.+.+..    ......++++.+.+.++..+++...    +.+++++.+++
T Consensus       214 ~~~~~s~sK~~~~~G~r~G~~--~~-~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~  282 (381)
T 1v2d_A          214 TFTVGSAGKRLEATGYRVGWI--VG-PKEFMPRLAG----MRQWTSFSAPTPLQAGVAEALKLAR----REGFYEALREG  282 (381)
T ss_dssp             EEEEEEHHHHTTCGGGCCEEE--EC-CTTTHHHHHH----HHHHHTSSCCHHHHHHHHHHHHHHH----HTTHHHHHHHH
T ss_pred             EEEEeechhhcCCcccceEEE--Ee-CHHHHHHHHH----HHhhcccCCCcHHHHHHHHHHhCcc----cHHHHHHHHHH
Confidence            999999999999999999999  45 4555554433    3333345778888888887776431    12457788899


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCC----------C--eEEecCCCCCCh
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD----------G--RISMAGLSSKTV  392 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g----------g--Ris~~~~~~e~i  392 (407)
                      ++++++++.+.|++.+    +.+..+.+++|.|+.+....+.++++++||.+.++          +  ||+++. +++++
T Consensus       283 ~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i  357 (381)
T 1v2d_A          283 YRRRRDLLAGGLRAMG----LRVYVPEGTYFLMAELPGWDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEEL  357 (381)
T ss_dssp             HHHHHHHHHHHHHHTT----CCEECCSBSSEEEEECTTCCHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHH
T ss_pred             HHHHHHHHHHHHHHCC----CEecCCCcceEEEEecChHhHHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHH
Confidence            9999999999999876    67777778888887553211677788899999764          2  999987 88999


Q ss_pred             hHHHHHHHHHHHh
Q 015435          393 PHLTDAIHAAVTR  405 (407)
Q Consensus       393 ~~~~~~l~~~l~~  405 (407)
                      ++++++|++++++
T Consensus       358 ~~~~~~l~~~l~~  370 (381)
T 1v2d_A          358 HLALERLGRVVNS  370 (381)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998754

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=7.3e-40  Score=311.85  Aligned_cols=346  Identities=13%  Similarity=0.124  Sum_probs=267.2

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      .++++|||+.|.+   +. +.++.+.+++.+.+.   ....+|++.  ..++++++++++....+..+++++|++  |+|
T Consensus        25 ~g~~~i~~~~~~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~--~~g   93 (391)
T 3dzz_A           25 LKEKELPMWIAEM---DF-KIAPEIMASMEEKLK---VAAFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVF--ASG   93 (391)
T ss_dssp             CCTTCEECCSSCC---SS-CCCHHHHHHHHHHHT---TCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEE--ESC
T ss_pred             cCCCceeccccCC---CC-CCCHHHHHHHHHHHh---cCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--CCC
Confidence            3469999999964   44 666677777777665   234567654  689999999998554444455689999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEee-cCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY-DPATRGLNFQGLLEDLRAAPSGAIVLLHACA  187 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p  187 (407)
                      +++++.++++.  .+.+||+|+++.|+|.++...++..|.+++.+|+. .+..+.+|++++++++.+ ++++++++ ++|
T Consensus        94 ~~~a~~~~~~~--l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~i-~~p  169 (391)
T 3dzz_A           94 VVPAISAMVRQ--FTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT-PSVRMMVF-CNP  169 (391)
T ss_dssp             HHHHHHHHHHH--HSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS-TTEEEEEE-ESS
T ss_pred             HHHHHHHHHHH--hCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc-cCceEEEE-ECC
Confidence            99999999544  47799999999999999999999999999999884 233345899999999963 34566655 899


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-HcCCcEEEEEecCccccccCCCcceeE
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-ADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      +||||.+++.+++++|+++|++||+++|+|++|.++.+.+..  ..++..+. ...++++++.|+||.+|++|+|+||+ 
T Consensus       170 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~-  246 (391)
T 3dzz_A          170 HNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDED--ITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACA-  246 (391)
T ss_dssp             BTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC--CCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEE-
T ss_pred             CCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCC--ceehhhcCccccCcEEEEEeChhhccccchhheEE-
Confidence            999999999999999999999999999999999998876421  11221121 11457899999999999999999999 


Q ss_pred             EeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCc
Q 015435          267 IVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDW  345 (407)
Q Consensus       267 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~  345 (407)
                       +++++++.+.+.....   ....++++.+++.++..+++...      +++++.+++++++++++.+.|++ ++.   +
T Consensus       247 -~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~---~  313 (391)
T 3dzz_A          247 -IIPNPDLRARAEESFF---LAGIGEPNLLAIPAAIAAYEEGH------DWLRELKQVLRDNFAYAREFLAKEVPE---V  313 (391)
T ss_dssp             -ECCSHHHHHHHHHHHH---HHTCSSCCTTHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCTT---S
T ss_pred             -EECCHHHHHHHHHHHH---hhccCCCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHhhCCC---c
Confidence             5776776665544221   12234677788888887776532      55778889999999999999998 532   7


Q ss_pred             ccccCCceeEEecCC-----CHHHHH-HhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          346 SHIIKQIGMFTFTGL-----NSEQVA-FMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       346 ~~~~~~~~~~~~~~~-----~~~~~~-~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+..+.++++.|+.+     +.+.+. .+++++||.+.+|.          ||+++. +++++++++++|+++++++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~~  389 (391)
T 3dzz_A          314 KVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC-PKELVIDGMQRLKQGVLNL  389 (391)
T ss_dssp             EECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHTC
T ss_pred             EEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence            778888998887643     555554 45467999998752          999995 8899999999999999875

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=100.00  E-value=5.6e-40  Score=315.92  Aligned_cols=356  Identities=14%  Similarity=0.132  Sum_probs=262.0

Q ss_pred             hhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHh-ccccccccCCCCCCcHHHHHHHHHHHhCCCCCCC
Q 015435           18 ILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV-NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAI   96 (407)
Q Consensus        18 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~   96 (407)
                      ++.....+...  ..+|||+.|.+ ++...|.++.+.+++.+.+. .......+|++..|.+++|+++++++ +     +
T Consensus        21 ~~~~~~~l~~~--~~~i~l~~g~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~-~-----~   91 (422)
T 3d6k_A           21 VTAKYAELKAK--NLSLDLTRGKP-SAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEAL-G-----L   91 (422)
T ss_dssp             HHHHHHHHHHT--TCCEECCCCSC-CHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHH-T-----C
T ss_pred             HHHHHHHHhcc--CCeEeCCCCCC-ChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHh-C-----C
Confidence            44444444432  34899999986 11112444455544433321 01123567988999999999999999 3     3


Q ss_pred             CCCceEEeecCCcccHH--HHHHHHHHhhcC------------CCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435           97 KDNRVTTVQCLSGTGSL--RVGAEFLARHYH------------QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG  162 (407)
Q Consensus        97 ~~~~i~~~~t~g~t~a~--~~~~~~~~~~~~------------gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~  162 (407)
                      ++++|++  |+|+++++  .++...+  ..+            +|+|++++|+|..+...++..|.+++.+|++ ++  +
T Consensus        92 ~~~~i~~--t~G~~~al~l~~~~~~l--~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~-~~--g  164 (422)
T 3d6k_A           92 PADLVVA--QDGSSLNIMFDLISWSY--TWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMT-DE--G  164 (422)
T ss_dssp             CGGGEEE--CSSCHHHHHHHHHHHHH--HHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEE-TT--E
T ss_pred             ChhHEEE--ecchHHHHHHHHHHHHh--cCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCC-CC--C
Confidence            4589999  99999997  5553333  334            3479999999999999999999999999994 32  5


Q ss_pred             cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHH-HcCceeeecccccc--ccCCCCCchhHHHHHH-
Q 015435          163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMR-SKGLLPFFDSAYQG--FASGSLDADAQSVRMF-  238 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~-~~~~~li~D~~y~~--~~~~~~~~~~~~~~~~-  238 (407)
                      +|++++++.+.+ .++++++++++||||||.+++.+++++|+++|+ +||+++|+||+|..  +...+.  ...++..+ 
T Consensus       165 ~d~~~l~~~l~~-~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~--~~~~~~~~~  241 (422)
T 3d6k_A          165 PDMGVVRELVKD-PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFP--IVHNVIEFA  241 (422)
T ss_dssp             ECHHHHHHHHTS-TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCC--CCCCHHHHH
T ss_pred             CCHHHHHHHHhc-CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCC--CCcChhhHh
Confidence            999999999862 145666756999999999999999999999999 99999999999985  544321  11222222 


Q ss_pred             --HHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435          239 --VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTL  316 (407)
Q Consensus       239 --~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  316 (407)
                        ....+++++++||||. +++|+|+||+  +++ +    .+.+.+.........+++.++|.++..++++..   .|.+
T Consensus       242 ~~~~~~~~~i~~~S~SK~-~~~GlriG~~--~~~-~----~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~  310 (422)
T 3d6k_A          242 QAAGNPNRFWFMSSTSKI-THAGSGVSFF--ASS-K----ENIEWYASHANVRGIGPNKLNQLAHAQFFGDVA---GLKA  310 (422)
T ss_dssp             HHTTCTTCEEEEEESTTT-SCTTSSCEEE--ECC-H----HHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHH---HHHH
T ss_pred             hccCCCCcEEEEcChhhh-cCcccceEEE--EeC-H----HHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcc---hHHH
Confidence              2345789999999998 7799999999  565 4    455555555555556789999999999998722   3446


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh----cCCCCCcccccCCceeEEecCC---CHHHHHHhHhhccEEEcCC----------
Q 015435          317 ELKAMADRIISMRQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSD----------  379 (407)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g----------  379 (407)
                      ++++.++.++++++.+.+.|.+    .+.   +.+..|.+|+|.|+.+   +.+.+.+++.++||.+.|+          
T Consensus       311 ~~~~~~~~~~~~~~~l~~~L~~~l~~~~~---~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~  387 (422)
T 3d6k_A          311 HMLKHAASLAPKFERVLEILDSRLSEYGV---AKWTSPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDP  387 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHGGGTC---EEECCCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcCCc---eEEeCCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCC
Confidence            6778888888888888887765    232   4556778899999865   3566777788899999882          


Q ss_pred             --C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          380 --G--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 --g--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                        +  ||+++..+++++++++++|+++++++
T Consensus       388 ~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~  418 (422)
T 3d6k_A          388 NNENIRLAPSLPPVAELEVAMDGFATCVLMA  418 (422)
T ss_dssp             TSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence              1  88888547899999999999988753

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=3.3e-39  Score=303.27  Aligned_cols=330  Identities=16%  Similarity=0.215  Sum_probs=260.2

Q ss_pred             hhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           26 NKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        26 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ....++++|||+.|.+    ..+.++.+.+++.+.+.    ....| |..+.+++|+++++++ +     +++++|++  
T Consensus        11 ~~~~~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~----~~~~y-~~~~~~~l~~~la~~~-~-----~~~~~i~~--   73 (354)
T 3ly1_A           11 TAPSTDNPIRINFNEN----PLGMSPKAQAAARDAVV----KANRY-AKNEILMLGNKLAAHH-Q-----VEAPSILL--   73 (354)
T ss_dssp             CCCCSSSCEECSSCCC----SSCCCHHHHHHHHHTGG----GTTSC-CHHHHHHHHHHHHHHT-T-----SCGGGEEE--
T ss_pred             cCCCCCceEEccCCCC----CCCCCHHHHHHHHHHHh----hCcCC-CCCchHHHHHHHHHHh-C-----CChHHEEE--
Confidence            3456789999999973    22455566666555553    25567 5678899999999998 4     23589999  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEec
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA  185 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~  185 (407)
                      |+|+++++.+++..  .+.+||+|+++.|+|.++...++..|.+++.++.+  .++++|++++++.+.+.++++++++ +
T Consensus        74 ~~g~~~a~~~~~~~--l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~~~~~~~~v~l-~  148 (354)
T 3ly1_A           74 TAGSSEGIRAAIEA--YASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKML--DNWAFDIEGLKAAVAAYSGPSIVYL-V  148 (354)
T ss_dssp             ESHHHHHHHHHHHH--HCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHHHTCSSCEEEEE-E
T ss_pred             eCChHHHHHHHHHH--HhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhccCCCCCEEEE-e
Confidence            99999999999533  36899999999999999999999999999999983  3588999999999985345677777 8


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC-CcEEEEEecCccccccCCCcce
Q 015435          186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG-GECLVAQSYAKNMGLYGERVGA  264 (407)
Q Consensus       186 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~s~sK~~~~~G~r~G~  264 (407)
                      +|+||||.+++.+++++|+++| +||+++|+|++|.++.+++......   ...... +++++++|+||.+|++|+|+||
T Consensus       149 ~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~s~sK~~g~~G~r~G~  224 (354)
T 3ly1_A          149 NPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSIS---PMITQGAENIILLKTFSKIHAMAGMRVGY  224 (354)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSH---HHHHTTCSSEEEEEESSSTTCCGGGCCEE
T ss_pred             CCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHH---HHhhhcCCCEEEEeeChhhccChhhhhee
Confidence            9999999999999999999999 8999999999999988764221211   222334 7889999999999999999999


Q ss_pred             eEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435          265 LSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD  344 (407)
Q Consensus       265 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  344 (407)
                      +  +++     +.+.+.+......  ++++.+++.++..++++.       +++++.+++++++++++.+.|++.+    
T Consensus       225 ~--~~~-----~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~----  284 (354)
T 3ly1_A          225 A--VAH-----PTVIALMGRYVAG--EKINFSGVDAALASMNDS-------AFITYSKKSNDVSRQILLKALEDLK----  284 (354)
T ss_dssp             E--ECC-----HHHHHHHGGGTTC--SCCCHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             e--ecC-----HHHHHHHHHhcCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----
Confidence            9  464     4455556555443  488899999999999865       4577888999999999999999886    


Q ss_pred             cccccCCceeEEecCC--CHHHHHHhHhhccEEEcCC------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          345 WSHIIKQIGMFTFTGL--NSEQVAFMTKEYHIYMTSD------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       345 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~g------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +.+.++. +.|.|+.+  +.+.+.+.|.++||.+. |      +  ||+++  +++++++++++|++++++
T Consensus       285 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          285 LPYLPSE-GNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPPADNWCRISLG--TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             CCBCCCC-SSEEEEECSSCHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred             CeECCCC-ceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence            5655554 45677766  45666666666899988 3      1  89977  678999999999999875

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=100.00  E-value=4.1e-40  Score=324.85  Aligned_cols=346  Identities=15%  Similarity=0.112  Sum_probs=266.3

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCC-CCCCcHHHHHHHHHHHhCC-CC-CCCC-CCceEEeecC
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL-PIVGLVDFNKLSAKLILGA-DS-PAIK-DNRVTTVQCL  107 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~g~~~l~~~~a~~~~~~-~~-~~~~-~~~i~~~~t~  107 (407)
                      ++|+|+.|.+   .. + +++++.++.+++.  .   ..|. +..|.+++|+.+++++... .+ ..+. +++|++  |+
T Consensus       104 ~~i~l~~g~~---~~-~-~~~~v~a~~~~~~--~---~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~--t~  171 (533)
T 3f6t_A          104 DAVNYCHTEL---GL-N-RDKVVAEWVNGAV--A---NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFP--TE  171 (533)
T ss_dssp             HHHHHHHHTT---CC-C-HHHHHHHHHHHHH--T---CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEE--EE
T ss_pred             hheeccCCCC---Cc-C-CcHHHHHHHHHHH--h---CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEE--EC
Confidence            4789999975   33 3 6678888877775  1   2454 7889999999999999332 12 2233 479999  99


Q ss_pred             CcccHHHHHHHHHH---hhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec--CCCCCcChhhHHHHHHcCCCCcEEE
Q 015435          108 SGTGSLRVGAEFLA---RHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD--PATRGLNFQGLLEDLRAAPSGAIVL  182 (407)
Q Consensus       108 g~t~a~~~~~~~~~---~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~--~~~~~~d~~~l~~~i~~~~~~~~v~  182 (407)
                      |+++++.+++..+.   .+.+||+|+++.|+|.++...++..|.+++.+++..  +.++++|++++++++.  +++++++
T Consensus       172 G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~--~~~k~v~  249 (533)
T 3f6t_A          172 GGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD--PSIKALI  249 (533)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC--TTEEEEE
T ss_pred             CHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC--CCCeEEE
Confidence            99999999954311   467999999999999999999999999999998853  4568899999999886  5677777


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHH-HcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMR-SKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER  261 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~-~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  261 (407)
                      + ++|+||||.+++.+++++|+++|+ +||+++|+||+|.++.++..     ++..  ...+++++++||||.+|++|+|
T Consensus       250 l-~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~-----~~~~--~~~~~~i~~~S~SK~~g~~G~R  321 (533)
T 3f6t_A          250 V-VNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFK-----SIYS--VVPYNTMLVYSYSKLFGCTGWR  321 (533)
T ss_dssp             E-ESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCC-----CHHH--HSGGGEEEEEESHHHHTCGGGC
T ss_pred             E-eCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCcc-----CHhh--cCCCCEEEEecCcccCCCcccc
Confidence            7 699999999999999999999999 58999999999999887521     1211  2246899999999999999999


Q ss_pred             cceeEEeecChhhHHHHHHHH--------------------------------hhhhhcccCCCChhHHHH----HHHHh
Q 015435          262 VGALSIVCKTEDVASRVESQL--------------------------------KLVIRPMYSSPPIHGASI----VATIL  305 (407)
Q Consensus       262 ~G~~~~v~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~----~~~~l  305 (407)
                      +||+  +++++.+.++++..+                                .......+.+++.+.|.+    +...+
T Consensus       322 iG~l--~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L  399 (533)
T 3f6t_A          322 LGVI--ALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHL  399 (533)
T ss_dssp             EEEE--EEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHH
T ss_pred             eEEE--EECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Confidence            9999  677665555554433                                334444555778888877    44455


Q ss_pred             cChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC---------------------HHH
Q 015435          306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN---------------------SEQ  364 (407)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~  364 (407)
                      ....-.+.+.+++++.+++++++++++.+.|+ .+    +.+..+.+++|.|+++.                     .++
T Consensus       400 ~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~----~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~  474 (533)
T 3f6t_A          400 LTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-AP----KDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDF  474 (533)
T ss_dssp             TTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CC----CCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHH
T ss_pred             hhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CC----ccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHH
Confidence            31000001236678889999999999999997 65    67778899999997553                     245


Q ss_pred             HHHhHhhccEEEcCC-------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          365 VAFMTKEYHIYMTSD-------G--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       365 ~~~~l~~~gi~~~~g-------g--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.++++++||.+.||       +  |||++.++++++++++++|+++++++
T Consensus       475 ~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~  525 (533)
T 3f6t_A          475 LLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEY  525 (533)
T ss_dssp             HHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence            678888899999986       2  99998778899999999999998753

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=2.6e-39  Score=308.04  Aligned_cols=339  Identities=9%  Similarity=0.076  Sum_probs=260.4

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      +.++|||+.|.+   .. +.++.+.+++.+.+.   ...+.|.+  +..++++++++++....+..+++++|++  |+|+
T Consensus        31 ~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~--~~g~   99 (391)
T 4dq6_A           31 TNDLLPMWVADM---DF-KAAPCIIDSLKNRLE---QEIYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIY--SPGV   99 (391)
T ss_dssp             CSCSEECCSSSC---SS-CCCHHHHHHHHHHHT---TCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCH
T ss_pred             CCCceeccccCC---CC-CCCHHHHHHHHHHHh---CCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEE--cCCh
Confidence            478999999963   33 666677777767664   22445654  5689999999998544444455689999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEee--cCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY--DPATRGLNFQGLLEDLRAAPSGAIVLLHACA  187 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~--~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p  187 (407)
                      ++++.++++  ..+.+||+|+++.|+|.++...++..|.+++.+|++  ++.++.+|++++++++.  + ++++++ ++|
T Consensus       100 ~~a~~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~-~~~v~i-~~p  173 (391)
T 4dq6_A          100 IPAISLLIN--ELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK--D-VKLFIL-CNP  173 (391)
T ss_dssp             HHHHHHHHH--HHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT--T-EEEEEE-ESS
T ss_pred             HHHHHHHHH--HhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh--c-CCEEEE-ECC
Confidence            999999954  347799999999999999999999999999999985  23345689999999997  4 566555 899


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-HcCCcEEEEEecCccccccCCCcceeE
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-ADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      +||||.+++.+++++|+++|++||+++|+||+|.++.+++...  .++..+. +..++++++.|+||.+|++|+|+||+ 
T Consensus       174 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~-  250 (391)
T 4dq6_A          174 HNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKH--IPMASISKEFEKNTITCMAPTKTFNIAGLQSSYV-  250 (391)
T ss_dssp             BTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCC--CCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEE-
T ss_pred             CCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCc--cCHHHcCccccCcEEEEEechhhccCcccceEEE-
Confidence            9999999999999999999999999999999999988764211  1111111 11357899999999999999999999 


Q ss_pred             EeecChhhHHHHHHHHhhhhhc-ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCC
Q 015435          267 IVCKTEDVASRVESQLKLVIRP-MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGD  344 (407)
Q Consensus       267 ~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~  344 (407)
                       +++++++.+.+..    .... ...+++.+++.++..+++...      +++++.+++++++++++.+.|++ .+.   
T Consensus       251 -~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~---  316 (391)
T 4dq6_A          251 -VLPDEKDYKLLDD----AFTRIDIKRNNCFSLVATEASYNNGE------SWLESFLEYLESNIDFAIKYINENMPK---  316 (391)
T ss_dssp             -ECCSHHHHHHHHH----HHHHTTCCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             -EeCCHHHHHHHHH----HHHhhcCCCCCHHHHHHHHHHHhchH------HHHHHHHHHHHHHHHHHHHHHHhhCCC---
Confidence             6776565555443    3222 234678888888887776432      45778889999999999999987 432   


Q ss_pred             cccccCCceeEEecCC-----CHHHHH-HhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHH
Q 015435          345 WSHIIKQIGMFTFTGL-----NSEQVA-FMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       345 ~~~~~~~~~~~~~~~~-----~~~~~~-~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +.+..+.++++.|+.+     +.+.+. .+++++||.+.||        +  ||+++. +++++++++++|++++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l  390 (391)
T 4dq6_A          317 LKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLAC-PRSMLEEALIRIKNAI  390 (391)
T ss_dssp             SEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred             CEecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHh
Confidence            7778888999887744     455544 4555459999875        2  999995 8899999999999876

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=1.5e-39  Score=312.78  Aligned_cols=343  Identities=13%  Similarity=0.101  Sum_probs=266.5

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      ++++|||++|.+   ++ +.++.+++++.+++.  . ..+.|.+.  ..++++++++++....+..+++++|++  |+|+
T Consensus        60 g~~~i~~~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~--~~g~  128 (421)
T 3l8a_A           60 NPELLQMWVADM---DF-LPVPEIKEAIINYGR--E-HIFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILF--IDGV  128 (421)
T ss_dssp             CTTCEECCSSCC---CS-CCCHHHHHHHHHHHH--H-CCSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCH
T ss_pred             CCCeeecccCCC---CC-CCCHHHHHHHHHHHh--c-CCcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--cCCH
Confidence            679999999964   54 667777777777775  2 34556543  378999999998554444456689999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEee-cCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY-DPATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      +++++++++.+  +.+||+|+++.|+|.++...++..|.+++.+|+. .+..+.+|++++++++.+ ++++++++ ++|+
T Consensus       129 ~ea~~~a~~~~--~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~-~~~~~vil-~~p~  204 (421)
T 3l8a_A          129 VPAISIALQAF--SEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID-NNVKIYLL-CSPH  204 (421)
T ss_dssp             HHHHHHHHHHH--SCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH-TTEEEEEE-ESSB
T ss_pred             HHHHHHHHHHh--cCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc-cCCeEEEE-CCCC
Confidence            99999996444  6799999999999999999999999999999985 233456899999999973 34566666 8999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-HcCCcEEEEEecCccccccCCCcceeEE
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-ADGGECLVAQSYAKNMGLYGERVGALSI  267 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~~~  267 (407)
                      ||||.+++.+++++|+++|++||++||+||+|.++.+.+...  .++..+. +..+.++++.|+||.++++|+|+||+  
T Consensus       205 nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~--  280 (421)
T 3l8a_A          205 NPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTH--HSLNTLDASYKDFTIILSSATKTFNIAGTKNSFA--  280 (421)
T ss_dssp             TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEE--
T ss_pred             CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC--ccHHHcCchhcCcEEEEEeChhhccCchhheEeE--
Confidence            999999999999999999999999999999999998865321  1221111 22467899999999999999999999  


Q ss_pred             eecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435          268 VCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH  347 (407)
Q Consensus       268 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  347 (407)
                      +++++++.+.+.....   .....+++.+++.++..+++...      +++++.+++++++++++.+.|++.+.   +.+
T Consensus       281 ~~~~~~l~~~~~~~~~---~~~~~~~n~~~~~a~~aal~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~---i~~  348 (421)
T 3l8a_A          281 IIQNESLRRKFQYRQL---ANNQHEVPTVGMIATQAAFQYGK------PWLEELKTVIEGNIKLVIKELEAKTK---IKV  348 (421)
T ss_dssp             ECCSHHHHHHHHHHHH---HTTCSCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCS---CEE
T ss_pred             EcCCHHHHHHHHHHHH---hcccCCCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHhCCC---ceE
Confidence            6776776665544221   22234788888988888877432      55778889999999999999988622   777


Q ss_pred             ccCCceeEEecCC-----CH-HHHHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHHH
Q 015435          348 IIKQIGMFTFTGL-----NS-EQVAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       348 ~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      ..+.++++.|+.+     +. ++...+++++||.+.+|        +  ||+++. +++++++++++|+++++
T Consensus       349 ~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          349 MEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVAT-PKNTVQEALSRIISVFG  420 (421)
T ss_dssp             ECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHC-
T ss_pred             eCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence            8889999988754     33 34556667789999874        2  999995 88999999999998875

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=100.00  E-value=2e-38  Score=299.27  Aligned_cols=324  Identities=12%  Similarity=0.074  Sum_probs=254.1

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      .+++|||+.|.+   .. +.++.+++++.+.+.    ....|++..+ .++|+++++++ +     +++++|++  |+|+
T Consensus        29 ~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~----~~~~y~~~~~-~~lr~~la~~~-~-----~~~~~v~~--~~g~   91 (365)
T 3get_A           29 VKEVIKLASNEN---PF-GTPPKAIECLRQNAN----KAHLYPDDSM-IELKSTLAQKY-K-----VQNENIII--GAGS   91 (365)
T ss_dssp             CSCCEECSSCCC---TT-CSCHHHHHHHHHHGG----GTTSCCCTTC-HHHHHHHHHHH-T-----CCGGGEEE--ESSH
T ss_pred             CCceEEecCCCC---CC-CCCHHHHHHHHHHHH----hhccCCCCCh-HHHHHHHHHHh-C-----CCcceEEE--CCCH
Confidence            378999999974   22 445566666655553    3566866555 89999999998 4     23589999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++.+++.  ..+.+||+|+++.|+|..+...++..|.+++.+++ +++++ +|++++++.+.  ++++++++ ++|+|
T Consensus        92 ~~a~~~~~~--~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~--~~~~~v~~-~~p~n  164 (365)
T 3get_A           92 DQVIEFAIH--SKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHK--DEIKLIFL-CLPNN  164 (365)
T ss_dssp             HHHHHHHHH--HHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTT--TTEEEEEE-ESSCT
T ss_pred             HHHHHHHHH--HHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhC--CCCCEEEE-cCCCC
Confidence            999999953  34789999999999999999999999999999988 34567 99999999987  56777777 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccC--CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEE
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS--GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSI  267 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  267 (407)
                      |||.+++.+++.+|+++| ++|+++|+|++|.++.+  .+.  ...+........+++++++|+||.++++|+|+||+  
T Consensus       165 ptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~--  239 (365)
T 3get_A          165 PLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK--KHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYG--  239 (365)
T ss_dssp             TTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG--GCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEE--
T ss_pred             CCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc--ccccHhHHhccCCCEEEEeecchHhcCcchheEEE--
Confidence            999999999999999999 67999999999998874  221  11222223345678999999999999999999999  


Q ss_pred             eecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435          268 VCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH  347 (407)
Q Consensus       268 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  347 (407)
                      ++ +++    +.+.+......  ++++.+++.++..++++.       +++++.+++++++++++.+.|++.+    +.+
T Consensus       240 ~~-~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~g----~~~  301 (365)
T 3get_A          240 IA-NAN----IISAFYKLRAP--FNVSNLALKAAVAAMDDD-------EFTEKTLENNFSQMELYKEFAKKHN----IKI  301 (365)
T ss_dssp             EE-CHH----HHHHHHHHSCT--TCSCHHHHHHHHHHHTCH-------HHHHHHHHHHHHHHHHHHHHHHHTT----CEE
T ss_pred             Ec-CHH----HHHHHHHhcCC--CCcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHhCC----CEE
Confidence            56 444    44444444433  368889999999999864       5577888999999999999999886    666


Q ss_pred             ccCCceeEEecCC---CHHHHHHhHhhccEEEcCCC-------eEEecCCCCCChhHHHHHHHHHH
Q 015435          348 IIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSDG-------RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       348 ~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~gg-------Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      ..+.++ |.|+.+   +.+.+.+.|.++||.+.+|.       ||+++  +++++++++++|++++
T Consensus       302 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~--~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          302 IDSYTN-FITYFFDEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG--TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             CCCSSS-EEEEECSSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC--CHHHHHHHHHHHHHHH
T ss_pred             CCCCCe-EEEEECCCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC--CHHHHHHHHHHHHHHh
Confidence            666554 567655   56666666666899998862       89887  6789999999999876

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=100.00  E-value=1.3e-38  Score=301.58  Aligned_cols=313  Identities=16%  Similarity=0.142  Sum_probs=251.5

Q ss_pred             HHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCC
Q 015435           55 RKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQP  134 (407)
Q Consensus        55 ~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p  134 (407)
                      +++.+.+.   ....+|.+..|..++|+++++++.+     ++++++++  |+|+++++.+++  ...+.+||+|+++.|
T Consensus        46 ~~~~~~~~---~~~~~y~~~~g~~~l~~~la~~~~~-----~~~~~v~~--~~g~~~a~~~~~--~~l~~~gd~Vl~~~~  113 (375)
T 3op7_A           46 EDFYKKLQ---GTKLNYGWIEGSPAFKKSVSQLYTG-----VKPEQILQ--TNGATGANLLVL--YSLIEPGDHVISLYP  113 (375)
T ss_dssp             HHHHHHHH---TSCCSSCCTTCCHHHHHHHHTTSSS-----CCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEES
T ss_pred             HHHHHHHh---cCCcCCCCCCChHHHHHHHHHHhcc-----CChhhEEE--cCChHHHHHHHH--HHhcCCCCEEEEeCC
Confidence            45555554   3456798999999999999998732     34589999  999999999995  344789999999999


Q ss_pred             CCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCcee
Q 015435          135 TWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP  214 (407)
Q Consensus       135 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l  214 (407)
                      +|.++...++..|.+++.++++.+.++.+|++++++++.  ++++++++ ++|+||||.+++.+++++|+++|++||+++
T Consensus       114 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~v~~-~~~~nptG~~~~~~~l~~i~~la~~~~~~l  190 (375)
T 3op7_A          114 TYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIR--PTTKMICI-NNANNPTGAVMDRTYLEELVEIASEVGAYI  190 (375)
T ss_dssp             SCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC--TTCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHTTTCEE
T ss_pred             CchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhc--cCCeEEEE-cCCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            999999999999999999999645556789999999987  56788777 799999999999999999999999999999


Q ss_pred             eeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCC
Q 015435          215 FFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPP  294 (407)
Q Consensus       215 i~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (407)
                      |+||+|..+.+.+.    .+.   ....+++++++||||.++++|+|+||+  ++ ++    ++.+.+.........+++
T Consensus       191 i~De~~~~~~~~~~----~~~---~~~~~~~i~~~s~sK~~~~~G~r~G~v--~~-~~----~l~~~~~~~~~~~~~~~~  256 (375)
T 3op7_A          191 LSDEVYRSFSELDV----PSI---IEVYDKGIAVNSLSKTYSLPGIRIGWV--AA-NH----QVTDILRDYRDYTMICAG  256 (375)
T ss_dssp             EEECCSCCCSSSCC----CCH---HHHCTTEEEEEESSSSSSCGGGCCEEE--EC-CH----HHHHHHTTTGGGTTSCCC
T ss_pred             EEEcccccccccCC----Cch---hhhcCCEEEEeEChhhcCCcccceEEE--Ee-CH----HHHHHHHHHHhhhccCCC
Confidence            99999999887521    111   233567899999999999999999999  56 44    455556656555566778


Q ss_pred             hhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC----CCHH-HHHHhH
Q 015435          295 IHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG----LNSE-QVAFMT  369 (407)
Q Consensus       295 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~l  369 (407)
                      .+.+.++...++..      .+.+++.+++++++++++.+.|++.+.   +.+..+.++++.|+.    .+.+ .+.+++
T Consensus       257 ~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  327 (375)
T 3op7_A          257 VFDDLVAQLALAHY------QEILERNRHILEENLAILDQWIEEEPL---VSYIRPAVVSTSFVKIAVDMPMEDFCLQLL  327 (375)
T ss_dssp             HHHHHHHHHHHHTH------HHHHHHHHHHHHHHHHHHHHHHHHCTT---EEECCCSSSSCEEEEECCSSCHHHHHHHHH
T ss_pred             cHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHhhCCC---ceEecCCCeEEEeEEcCCCCCHHHHHHHHH
Confidence            88888888777753      255778888899999999999988642   677777787776653    2443 456777


Q ss_pred             hhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          370 KEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       370 ~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +++||.+.||.        ||+++. +++++++++++|+++++++
T Consensus       328 ~~~gi~v~~g~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~  371 (375)
T 3op7_A          328 QEHGVLLVPGNRFERDGYVRLGFAC-EQETLIKGLEKLSQFLRRF  371 (375)
T ss_dssp             HHHCEECEEGGGGTCTTEEEECCCS-CHHHHHHHHHHHHHHHGGG
T ss_pred             HhCCEEEeChhhhCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence            88999998862        899886 6688999999999998764

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=100.00  E-value=5.6e-38  Score=296.40  Aligned_cols=330  Identities=18%  Similarity=0.163  Sum_probs=260.1

Q ss_pred             hhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           25 YNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        25 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      +.....+++|||+.|.+   .. +.++.+.+++.+.+.  ......|+. .+..++|+++++++ +..    ++++|++ 
T Consensus        24 ~~~~~~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~-~~~~~l~~~la~~~-g~~----~~~~i~~-   90 (367)
T 3euc_A           24 YHVPDSHGLVKLDAMEN---PY-RLPPALRSELAARLG--EVALNRYPV-PSSEALRAKLKEVM-QVP----AGMEVLL-   90 (367)
T ss_dssp             SSCCCCTTCEECCSSCC---CC-CCCHHHHHHHHHHHH--HHHTTCSCC-CCHHHHHHHHHHHH-TCC----TTCEEEE-
T ss_pred             CCCCCCCCeeEccCCCC---CC-CCCHHHHHHHHHHhh--hhhhhcCCC-CcHHHHHHHHHHHh-CCC----CcceEEE-
Confidence            33344578999999973   33 556677777666664  223566754 68999999999998 431    3579999 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEe
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH  184 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~  184 (407)
                       |+|+++++.+++  ...+.+||+|+++.|+|.++...++..|.+++.+|.+  .++.+|++++++.+.+. +++++++ 
T Consensus        91 -~~g~t~a~~~~~--~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~v~~-  163 (367)
T 3euc_A           91 -GNGSDEIISMLA--LAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLR--ADFTLDRGAMLAAMAEH-QPAIVYL-  163 (367)
T ss_dssp             -EEHHHHHHHHHH--HHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECC--TTSCCCHHHHHHHHHHH-CCSEEEE-
T ss_pred             -cCCHHHHHHHHH--HHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCC--CCCCCCHHHHHHHhhcc-CCCEEEE-
Confidence             999999999995  3446799999999999999999999999999999983  36789999999999831 5778777 


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHc--CceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc
Q 015435          185 ACAHNPTGVDPTLEQWEQIRQLMRSK--GLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV  262 (407)
Q Consensus       185 ~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  262 (407)
                      ++||||||.+++.+++++|+++|++|  |+++|+|++|.++...+.   ..    .....++++++.|+||. +++|+|+
T Consensus       164 ~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~---~~----~~~~~~~~i~~~s~sK~-~~~G~r~  235 (367)
T 3euc_A          164 AYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESW---MS----RLTDFGNLLVMRTVSKL-GLAGIRL  235 (367)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCS---GG----GGGTCTTEEEEEECCCT-TSCSCCE
T ss_pred             cCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccch---HH----HHhhCCCEEEEecchhh-cccccCc
Confidence            79999999999999999999999999  999999999998875421   11    12345688999999999 9999999


Q ss_pred             ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015435          263 GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP  342 (407)
Q Consensus       263 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  342 (407)
                      ||+  +++     +.+.+.+.....  .++++.+++.++..+++..       +++++.+++++++++++.+.|++.+. 
T Consensus       236 G~~--~~~-----~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~g-  298 (367)
T 3euc_A          236 GYV--AGD-----PQWLEQLDKVRP--PYNVNVLTEATALFALEHV-------AVLDEQAAQLRAERSRVAEGMAAHGG-  298 (367)
T ss_dssp             EEE--EEC-----HHHHHHHGGGCC--SSCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHHHHTSTT-
T ss_pred             eee--eeC-----HHHHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence            999  565     445555554443  3478889999999999873       55778889999999999999998732 


Q ss_pred             CCcccccCCceeEEecCC-CHHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHH
Q 015435          343 GDWSHIIKQIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                        +.+. +..+.|.|+.+ +.+.+.+.|.++||.+.+++          ||+++  +++++++++++|+++++
T Consensus       299 --~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          299 --VTVF-PSAANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             --CEEC-CCSSSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred             --cEEC-CCCCeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHHHHHHhc
Confidence              5644 44556777766 56666666778999998752          88877  78899999999998764

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=100.00  E-value=4.6e-39  Score=309.07  Aligned_cols=367  Identities=13%  Similarity=0.110  Sum_probs=250.7

Q ss_pred             ccccccCCCCCchhhhhHhhh-hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc---cccccCCCCCCcHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYN-KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ---SRVKEYLPIVGLVDFN   81 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~y~~~~g~~~l~   81 (407)
                      ++.+..  .+..+...++.+. ...++++|||+.|.|   +..|.+.+.+.+.+..+..+.   ....+|.+..|.+++|
T Consensus         7 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr   81 (417)
T 3g7q_A            7 FGDKFT--RHSGITRLMEDLNDGLRTPGAIMLGGGNP---AHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALL   81 (417)
T ss_dssp             -----------CHHHHHHHHHC-----CCEECSCCCC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHH
T ss_pred             hhhhhh--ccccHHHHHHHHHhhccCCCceEecCcCC---CCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHH
Confidence            444433  3445666665554 335589999999986   332433345555444443111   1234799999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC-----eEEec-CCCCCChHHHHh------hcCce
Q 015435           82 KLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL-----TIYIP-QPTWGNHPKVFT------LAGLS  149 (407)
Q Consensus        82 ~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd-----~Vi~~-~p~y~~~~~~~~------~~G~~  149 (407)
                      +++++++...++..+++++|++  |+|+++++.++++.+  +.+||     +|+++ +|+|.++...+.      ..+..
T Consensus        82 ~~ia~~~~~~~g~~~~~~~i~~--t~G~t~al~~~~~~l--~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~  157 (417)
T 3g7q_A           82 NALAVLLRETLGWDIEPQNIAL--TNGSQSAFFYLFNLF--AGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPN  157 (417)
T ss_dssp             HHHHHHHHHHHCCCCCGGGEEE--ESCHHHHHHHHHHHH--SBC----CCBEEEESSCCCHHHHHC-----CCEEECCCE
T ss_pred             HHHHHHHHHHhCCCCCcccEEE--eCCcHHHHHHHHHHH--cCCCccCCcceEEEeCCCccccchhhccchhhhccccCc
Confidence            9999999554455567799999  999999999995444  67877     89997 999998877653      22333


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                      +..++.. ..++.+|+++++  +.  ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|..+... ..
T Consensus       158 ~~~~~~~-~~~~~~d~~~l~--~~--~~~~~v~~-~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~-~~  230 (417)
T 3g7q_A          158 IELLPEG-QFKYHVDFEHLH--IG--EETGMICV-SRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPG-II  230 (417)
T ss_dssp             EEEEGGG-EEEEECCGGGCC--CC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTC-CB
T ss_pred             ccccCCc-ccccccCHHHhc--cc--cCceEEEE-CCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccc-cc
Confidence            4334321 113568999887  43  45566555 999999999999999999999999999999999999754321 00


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST  309 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (407)
                      ..  ..  .....++++++.|||| ++++|+|+||+  +++ +    .+.+.+.........+++.+++.++..++++..
T Consensus       231 ~~--~~--~~~~~~~~i~~~s~sK-~~~~G~r~G~~--~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  298 (417)
T 3g7q_A          231 FS--EA--RPLWNPNIILCMSLSK-LGLPGSRCGII--IAN-D----KTITAIANMNGIISLAPGGMGPAMMCEMIKRND  298 (417)
T ss_dssp             CS--CC--CCCCCTTEEEEEESGG-GTCTTSCCEEE--ECC-H----HHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTC
T ss_pred             cc--cc--ccCCCCCEEEEEechh-ccCCCcceEEE--EeC-H----HHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcc
Confidence            00  00  0123468999999999 68899999998  455 4    455555555555566788999999999988764


Q ss_pred             hHHhHHHHHHH-HHHHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEecC-----CCHHHHHHhHhhccEEEcCC---
Q 015435          310 MYKEWTLELKA-MADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTG-----LNSEQVAFMTKEYHIYMTSD---  379 (407)
Q Consensus       310 ~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~~~~g---  379 (407)
                          |.+...+ .+++++++++.+.+.|++. +. ..+.+..+.+++|.|+.     .+.+.+...|.++||.+.||   
T Consensus       299 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f  373 (417)
T 3g7q_A          299 ----LLRLSETVIKPFYYQRVQQTIAIIRRYLSE-ERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYF  373 (417)
T ss_dssp             ----HHHHHHHTHHHHHHHHHHHHHHHHHHHCCT-TTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGG
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhh
Confidence                2333443 6778888888888888763 21 11566778889999874     35566666667789999763   


Q ss_pred             ------------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          380 ------------G--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 ------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                                  +  ||+++. +++++++++++|+++++++
T Consensus       374 ~~~~~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~l~~~  413 (417)
T 3g7q_A          374 FPGLDKPWPHTHQCMRMNYVP-EPDKIEAGVKILAEEIERA  413 (417)
T ss_dssp             CTTBSSCCGGGGGEEEEESCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccccCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence                        2  999987 8899999999999998753

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=1e-38  Score=304.85  Aligned_cols=343  Identities=12%  Similarity=0.124  Sum_probs=258.5

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      +++|||+.|.+   .. +.++.+.+++.+.+.   .....|++.  ..++|+++++++....+..+++++|++  |+|++
T Consensus        31 ~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--t~g~~   99 (399)
T 1c7n_A           31 NEVVPLSVADM---EF-KNPPELIEGLKKYLD---ETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIIN--TAGVV   99 (399)
T ss_dssp             TTCCCCCSSSC---SS-CCCHHHHHHHHHHHH---HCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESSHH
T ss_pred             CCceeeeecCC---CC-CCCHHHHHHHHHHHh---cCCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEE--cCCHH
Confidence            58999999874   22 445556666656554   224567553  899999999998432233345689999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCC-CCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA-TRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      +++.+++..  .+.+||+|+++.|+|.++...++..|.+++.+|..+++ .+.+|++++++.+.+ ++++++++ ++|+|
T Consensus       100 ~a~~~~~~~--l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-~~~~~v~~-~~~~n  175 (399)
T 1c7n_A          100 PAVFNAVRE--FTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD-KNNKALLF-CSPHN  175 (399)
T ss_dssp             HHHHHHHHH--HCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC-TTEEEEEE-ESSBT
T ss_pred             HHHHHHHHH--hcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc-CCCcEEEE-cCCCC
Confidence            999999543  36789999999999999999999999999999884222 245899999999863 24566665 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH-cCCcEEEEEecCccccccCCCcceeEEe
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA-DGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      |||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+.. ..++++++.|+||.++++|+|+||+  +
T Consensus       176 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~  251 (399)
T 1c7n_A          176 PVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYE--HTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNI--I  251 (399)
T ss_dssp             TTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCC--CCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE--E
T ss_pred             CCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--cccHHHcCccccCcEEEEEeChhhccccchheEEE--E
Confidence            9999999999999999999999999999999998875421  111111111 1367899999999999999999999  5


Q ss_pred             ecChhhHHHHHHHHhhhhhccc-CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcc
Q 015435          269 CKTEDVASRVESQLKLVIRPMY-SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWS  346 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~  346 (407)
                      ++++++.+.+..    ....+. .+++.+++.++..+++...      +++++.+++++++++++.+.|++ ++.   +.
T Consensus       252 ~~~~~~~~~l~~----~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~  318 (399)
T 1c7n_A          252 IKNPDIRERFTK----SRDATSGMPFTTLGYKACEICYKECG------KWLDGCIKVIDKNQRIVKDFFEVNHPE---IK  318 (399)
T ss_dssp             CCCHHHHHHHHH----HHHHTTCCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCTT---SB
T ss_pred             ECCHHHHHHHHH----HHhhcccCCCCHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHHhhCCC---Ce
Confidence            766655554433    333332 2578888888887776432      45778889999999999999988 532   67


Q ss_pred             cccCCceeEEecCC-----CHHHHH-HhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          347 HIIKQIGMFTFTGL-----NSEQVA-FMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       347 ~~~~~~~~~~~~~~-----~~~~~~-~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +..+.++++.|+.+     +.+.+. .+++++||.+.||        +  ||+++. +++++++++++|+++++++
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~  393 (399)
T 1c7n_A          319 APLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKDL  393 (399)
T ss_dssp             CCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHHHHHH
Confidence            77788888887644     455444 4555789999875        2  999986 6788999999999998764

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=100.00  E-value=3.1e-39  Score=318.61  Aligned_cols=338  Identities=14%  Similarity=0.114  Sum_probs=249.6

Q ss_pred             eeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCC-C---CCCCCceEEeecCC
Q 015435           33 KLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADS-P---AIKDNRVTTVQCLS  108 (407)
Q Consensus        33 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~-~---~~~~~~i~~~~t~g  108 (407)
                      +|+|++|.+    + ..++.+++++.+.+.     ..+|+++.|..++|+++++.+..... .   ..++++|++  |+|
T Consensus       106 ~i~l~~g~~----~-~~~~~~~~al~~~~~-----~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~--t~G  173 (546)
T 2zy4_A          106 SLSYVRDQL----G-LDPAAFLHEMVDGIL-----GCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFA--VEG  173 (546)
T ss_dssp             HHHHHHHTS----C-CCHHHHHHHHHHHHH-----TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEE--EEH
T ss_pred             hhecccCCC----C-CCChHHHHHHHHhhh-----cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEE--ECC
Confidence            799999975    3 223455555555543     35798888999999998887633221 1   124589999  999


Q ss_pred             cccHHHHHHHHHH---hhcCCCeEEecCCCCCChHHHHh--hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEE
Q 015435          109 GTGSLRVGAEFLA---RHYHQLTIYIPQPTWGNHPKVFT--LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL  183 (407)
Q Consensus       109 ~t~a~~~~~~~~~---~~~~gd~Vi~~~p~y~~~~~~~~--~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i  183 (407)
                      +++++.+++..+.   .+.+||+|++++|+|+.|.....  ..|.+++.++++.+.++.+|++++++.+.  ++++++++
T Consensus       174 ~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--~~~k~v~l  251 (546)
T 2zy4_A          174 GTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD--PAIKIFFC  251 (546)
T ss_dssp             HHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS--TTEEEEEE
T ss_pred             HHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC--CCCeEEEE
Confidence            9999999854421   35799999999999999998755  45788899988544456799999988764  55677777


Q ss_pred             ecCCCCCCCCCCCHHHHHHHHHHH--HHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435          184 HACAHNPTGVDPTLEQWEQIRQLM--RSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER  261 (407)
Q Consensus       184 ~~~p~NPtG~~~~~~~l~~i~~~~--~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  261 (407)
                       ++||||||.+++.+++++|+++|  +++|++||+||+|.++.++.     .++...  ..+++++++||||.+|++|+|
T Consensus       252 -~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~-----~s~~~~--~~~~~i~~~S~SK~~g~~GlR  323 (546)
T 2zy4_A          252 -VNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDF-----QSLFAI--CPENTLLVYSFSKYFGATGWR  323 (546)
T ss_dssp             -ESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTC-----CCHHHH--CGGGEEEEEESTTTTTCGGGC
T ss_pred             -ECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccC-----cCHHHh--CCCCEEEEEeCccccCCCCcc
Confidence             79999999999999999999999  78999999999999988631     122221  235799999999999999999


Q ss_pred             cceeEEeecChhhHHHHHHHH------------hh--------------------hhhcccCCCChhHHHHH-----HHH
Q 015435          262 VGALSIVCKTEDVASRVESQL------------KL--------------------VIRPMYSSPPIHGASIV-----ATI  304 (407)
Q Consensus       262 ~G~~~~v~~~~~~~~~~~~~~------------~~--------------------~~~~~~~~~~~~~~~~~-----~~~  304 (407)
                      +||+  +++++++.+.+...+            ..                    .......+.+.+.|.++     ..+
T Consensus       324 iG~~--~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~al  401 (546)
T 2zy4_A          324 LGVV--AAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFAL  401 (546)
T ss_dssp             EEEE--EEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHH
T ss_pred             eEEE--EECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHH
Confidence            9999  576555666553321            10                    01122235677777653     244


Q ss_pred             hcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC---------------------HH
Q 015435          305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN---------------------SE  363 (407)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~  363 (407)
                      +++.+      .+.+++++.++++++++.+.|. .+    +....+.++||+|+++.                     .+
T Consensus       402 l~~~~------~~~~~~r~~~~~r~~~l~~~L~-~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~  470 (546)
T 2zy4_A          402 MDEAD------EYKHTLKQLIRRRETTLYRELG-MP----PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGD  470 (546)
T ss_dssp             HCTTC------HHHHHHHHHHHHHHHHHHGGGT-SS----CCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHH
T ss_pred             HhccH------HHHHHHHHHHHHHHHHHHHhcC-CC----cccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHH
Confidence            55432      4567788899999999998885 44    55567889999887542                     24


Q ss_pred             HHHHhHhhccEEEcCCC---------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          364 QVAFMTKEYHIYMTSDG---------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       364 ~~~~~l~~~gi~~~~gg---------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ++.++++++||.+.||.         ||+++..+++++++++++|++++++
T Consensus       471 ~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~  521 (546)
T 2zy4_A          471 MLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADE  521 (546)
T ss_dssp             HHHHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence            46778888999999962         9999865778899999999998864

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=100.00  E-value=3.9e-38  Score=297.04  Aligned_cols=323  Identities=13%  Similarity=0.126  Sum_probs=247.6

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      ..+++|||+.|.+    ..+.++.+.+++.+.+    .....| |..+..++|+++++++ +     +++++|++  |+|
T Consensus        30 ~~~~~i~l~~~~~----~~~~~~~v~~a~~~~~----~~~~~y-~~~~~~~lr~~la~~~-~-----~~~~~v~~--~~g   92 (363)
T 3ffh_A           30 GLTKITKLSSNEN----PLGTSKKVAAIQANSS----VETEIY-PDGWASSLRKEVADFY-Q-----LEEEELIF--TAG   92 (363)
T ss_dssp             TCSCCEECSSCSC----TTCCCHHHHHHHHTCB----SCCCBC-----CHHHHHHHHHHH-T-----CCGGGEEE--ESS
T ss_pred             CCCceEEccCCCC----CCCCCHHHHHHHHHHH----HHhhcC-CCcchHHHHHHHHHHh-C-----CChhhEEE--eCC
Confidence            3468999999974    2244444444443333    234456 5678999999999999 4     23589999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      +++++.++++.  .+.+||+|+++.|+|..+...++..|.+++.+|.+  .++.+|++++++.+.  ++++++++ ++|+
T Consensus        93 ~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~--~~~~~v~~-~~p~  165 (363)
T 3ffh_A           93 VDELIELLTRV--LLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--QDGEHDLEGMLNAID--EKTTIVWI-CNPN  165 (363)
T ss_dssp             HHHHHHHHHHH--HCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECC--TTSCCCHHHHHHHCC--TTEEEEEE-ESSC
T ss_pred             HHHHHHHHHHH--HccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--CCCCcCHHHHHHhcc--cCCCEEEE-eCCC
Confidence            99999999533  37799999999999999999999999999999983  357899999999987  56677777 8999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      ||||.+++.+++.+|++.|++ |+++|+|++|.++.+ +..   .+........++++++.|+||.+|++|+|+||+  +
T Consensus       166 nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~---~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~--~  238 (363)
T 3ffh_A          166 NPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQP---EKHEKLVRTYKNLIITRTFSKIYGLASARVGYG--I  238 (363)
T ss_dssp             TTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCC---CCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEE--E
T ss_pred             CCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccc---cCHHHHhhcCCCEEEEeechhhhcCchhceeee--e
Confidence            999999999999999888887 999999999998886 321   111112344678999999999999999999999  5


Q ss_pred             ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCccc
Q 015435          269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWSH  347 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~  347 (407)
                      ++ ++    +.+.+.....  .++++.+++.++..++++.       +++++.+++++++++++.+.|++ .+    +.+
T Consensus       239 ~~-~~----~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~g----~~~  300 (363)
T 3ffh_A          239 AD-KE----IIRQLNIVRP--PFNTTSIGQKLAIEAIKDQ-------AFIGECRTSNANGIKQYEAFAKRFEK----VKL  300 (363)
T ss_dssp             EC-HH----HHHHHHHTCC--SCCCBHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHHHCTT----CEE
T ss_pred             cC-HH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHhhCCC----ceE
Confidence            64 44    4444444433  4478889999999888754       45778889999999999999998 55    666


Q ss_pred             ccCCceeEEecCC--CHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHH
Q 015435          348 IIKQIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       348 ~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      .++.+ .|.|+.+  +.+.+.+.|.++||.+.+|.        ||+++  +++++++++++|++++
T Consensus       301 ~~~~~-~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l  363 (363)
T 3ffh_A          301 YPANG-NFVLIDLGIEAGTIFSYLEKNGYITRSGAALGFPTAVRITIG--KEEDNSAVIALLEKLL  363 (363)
T ss_dssp             CCCCS-SEEEEECSSCHHHHHHHHHHTTEECEETTTTTCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred             CCCCC-eEEEEECCCCHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC--CHHHHHHHHHHHHHhC
Confidence            65554 4567755  55566655666899998862        88887  7789999999998763

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=100.00  E-value=1.1e-38  Score=304.87  Aligned_cols=359  Identities=16%  Similarity=0.185  Sum_probs=253.3

Q ss_pred             ccccccCCCCCc-hhhhh---Hhhh-hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhc--cccccccCCCCCCcH
Q 015435            6 VFGKIVRAPEDP-ILGVT---VAYN-KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN--DQSRVKEYLPIVGLV   78 (407)
Q Consensus         6 ~~~~~~~~~~~~-~~~~~---~~~~-~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~g~~   78 (407)
                      +.+++...++.. +....   ..+. ..+++++|+|+.|.+   .. +.++.+.+++.+.+..  ......+|++..|..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~   78 (400)
T 3asa_A            3 RNPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDT---TQ-PLNASVAEAFASSIARLSSPTTCRGYGPDFGLP   78 (400)
T ss_dssp             CCHHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCC---CC-CCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCH
T ss_pred             cchhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCC---CC-CCCHHHHHHHHHHHhcccccccccCCCCCCCCH
Confidence            345555555433 22222   2222 234678999999974   22 4455566666555531  011245688888999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCce-eeEEEeec
Q 015435           79 DFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLS-VKTYRYYD  157 (407)
Q Consensus        79 ~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~-~~~v~~~~  157 (407)
                      ++|+++++++.  .+. +++++|++  |+|+++++.++.   ..+.+||+|+++.|+|.++...++..|.+ ++.+|+.+
T Consensus        79 ~lr~~la~~l~--~g~-~~~~~v~~--~~G~~~al~~~~---~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~  150 (400)
T 3asa_A           79 ALRQKLSEDFY--RGF-VDAKEIFI--SDGAKVDLFRLL---SFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQ  150 (400)
T ss_dssp             HHHHHHHHTTS--TTS-SCGGGEEE--ESCHHHHHHHHH---HHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCG
T ss_pred             HHHHHHHHHHH--cCC-CCHHHEEE--ccChHHHHHHHH---HHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccch
Confidence            99999999973  232 45689999  999999999873   44578999999999999999999999998 99998843


Q ss_pred             CCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435          158 PATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM  237 (407)
Q Consensus       158 ~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~  237 (407)
                      +.++..+++++       ++++++++ ++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++..  ..++..
T Consensus       151 ~~~~~~~l~~~-------~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~  220 (400)
T 3asa_A          151 ENAFFPEFPED-------THIDILCL-CSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSL--PKSIFE  220 (400)
T ss_dssp             GGTTCCCCCTT-------CCCSEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTS--CSSGGG
T ss_pred             hcCcccChhhc-------cCccEEEE-eCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCC--CCchhh
Confidence            22233343321       35677777 689999999999999999999999999999999999988775321  111211


Q ss_pred             HHHcCCcEEEEEecCccccccCCCcceeEEeecChhh-------HHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhh
Q 015435          238 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV-------ASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTM  310 (407)
Q Consensus       238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (407)
                      +....+++++++|+||.+|++|+|+||+  +++ +++       .+.+...   .......+++.++|.++..++++.  
T Consensus       221 ~~~~~~~~i~~~s~sK~~g~~GlriG~~--~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~--  292 (400)
T 3asa_A          221 IPDARFCAIEINSFSKPLGFAGIRLGWT--VIP-QELTYADGHFVIQDWER---FLSTTFNGASIPAQEAGVAGLSIL--  292 (400)
T ss_dssp             STTGGGTEEEEEECCGGGTTTTCCCEEE--ECC-TTCBCTTSCBHHHHHHH---HHHHHCCCCCHHHHHHHHHHHHHT--
T ss_pred             CCCCCCceEEEecchhhcCCcchheeEE--eeC-hhhccchhhhHHHHHHH---HhccCccCCChHHHHHHHHHhCcH--
Confidence            1111356899999999999999999999  565 443       3333221   111222367888898888777643  


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC-CC----H-HHHHHhHhhccEEEcCC-----
Q 015435          311 YKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG-LN----S-EQVAFMTKEYHIYMTSD-----  379 (407)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~----~-~~~~~~l~~~gi~~~~g-----  379 (407)
                            ++++.+++++++++++.+.|++.+    +.+..+.+++|.|+. +.    . +....+++++||.+.||     
T Consensus       293 ------~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~  362 (400)
T 3asa_A          293 ------PQLEAIHYYRENSDLLRKALLATG----FEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGR  362 (400)
T ss_dssp             ------TTCHHHHHHHHHHHHHHHHHHHTT----CEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCG
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHCC----CeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCC
Confidence                  245677888899999999999876    676667778888876 42    2 45566777789999875     


Q ss_pred             ---C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          380 ---G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       380 ---g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                         +  ||++.. +++++++++++|++++++
T Consensus       363 ~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~  392 (400)
T 3asa_A          363 SGSGFVRFSSLG-KREDILAACERLQMAPAL  392 (400)
T ss_dssp             GGTTCEEEECCS-CHHHHHHHHHHHHC----
T ss_pred             CCCCEEEEEeeC-CHHHHHHHHHHHHHHHHh
Confidence               1  888654 889999999999998865

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=3.7e-38  Score=300.15  Aligned_cols=341  Identities=15%  Similarity=0.083  Sum_probs=253.3

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHH-HHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVD-FNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~-l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      +++|||+.|.+   +. +.++.+.+++.+.+.   .....|++.  ..+ +|+++++++....+..+++++|++  |+|+
T Consensus        28 ~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~--t~g~   96 (390)
T 1d2f_A           28 ADLLPFTISDM---DF-ATAPCIIEALNQRLM---HGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVY--GPSV   96 (390)
T ss_dssp             --CEECCSSSC---SS-CCCHHHHHHHHHHHT---TCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEE--ESCH
T ss_pred             CCeeEeeecCC---CC-CCCHHHHHHHHHHHh---CCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEE--cCCH
Confidence            57999999874   22 445556666656554   224567654  778 999999998543444455689999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCC-CCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA-TRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      ++++.+++  ...+.+||+|+++.|+|.++...++..|.+++.+|...+. .+.+|++++++.+.+ .+++++++ ++|+
T Consensus        97 ~~al~~~~--~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~l-~~p~  172 (390)
T 1d2f_A           97 IYMVSELI--RQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK-PECKIMLL-CSPQ  172 (390)
T ss_dssp             HHHHHHHH--HHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS-TTEEEEEE-ESSC
T ss_pred             HHHHHHHH--HHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc-CCCeEEEE-eCCC
Confidence            99999995  3346789999999999999999999999999999985322 245899999999872 14566665 7999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      ||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+.. .-... +.|+||.++++|+|+||+  +
T Consensus       173 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~-~~~d~-~~s~sK~~~~~G~r~G~~--~  246 (390)
T 1d2f_A          173 NPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQP--HIPWSNVAR-GDWAL-LTSGSKSFNIPALTGAYG--I  246 (390)
T ss_dssp             TTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSC--CCCGGGTCC-SSEEE-EECSHHHHTCGGGCCEEE--E
T ss_pred             CCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CcCHHHcch-hhHhh-ccCccHhhcccChhheEE--E
Confidence            99999999999999999999999999999999998875421  111111111 10023 999999999999999999  6


Q ss_pred             ecChhhHHHHHHHHhhhhh-ccc-CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCc
Q 015435          269 CKTEDVASRVESQLKLVIR-PMY-SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDW  345 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~  345 (407)
                      ++++++.+.+..    ... ... .+++.+++.++..+++...      +++++.+++++++++++.+.|++ ++.   +
T Consensus       247 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~~---~  313 (390)
T 1d2f_A          247 IENSSSRDAYLS----ALKGRDGLSSPSVLALTAHIAAYQQGA------PWLDALRIYLKDNLTYIADKMNAAFPE---L  313 (390)
T ss_dssp             ECSHHHHHHHHH----HHHTTSCCCSCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCSS---C
T ss_pred             ECCHHHHHHHHH----HHhhhcccCCCCHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHhhCCC---C
Confidence            766665544433    332 223 3678888888877776422      45778889999999999999988 532   6


Q ss_pred             ccccCCceeEEecCC-----CHHHHH-HhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          346 SHIIKQIGMFTFTGL-----NSEQVA-FMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       346 ~~~~~~~~~~~~~~~-----~~~~~~-~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+..+.++++.|+.+     +.+.+. .+++++||.+.+|        +  ||+++. +++++++++++|+++++++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~~~  389 (390)
T 1d2f_A          314 NWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRAV  389 (390)
T ss_dssp             CCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence            667788888887643     455444 4554789999875        2  999997 7789999999999998764

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=4.4e-38  Score=304.78  Aligned_cols=365  Identities=14%  Similarity=0.091  Sum_probs=261.1

Q ss_pred             CCchhhhhHhhh-hcCCCCee-eeeeeeeecCCCccccchhHHHHHHHHhcc-------c---cccccCCCCCCcHHHHH
Q 015435           15 EDPILGVTVAYN-KDTSPVKL-NLGVGAYRTEEGKPLVLNVVRKAEQLLVND-------Q---SRVKEYLPIVGLVDFNK   82 (407)
Q Consensus        15 ~~~~~~~~~~~~-~~~~~~~i-~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~y~~~~g~~~l~~   82 (407)
                      +.++...+..+. ....+++| +|+.|.|   ...|.+.+.+.+.+.....+       .   ....+|.+..|++++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~   90 (444)
T 3if2_A           14 PTGISQLMDDLGDALKSDQPVNMLGGGNP---AKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFID   90 (444)
T ss_dssp             CCHHHHHHHHHHHHHHSSSCCEECSCCCC---CCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHH
T ss_pred             chhHHHHHHHHHhhhcCchhhhccCCCCC---CcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHH
Confidence            345666665443 22347899 9999986   33232334444444443312       1   12357988999999999


Q ss_pred             HHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC--------------eEEec-CCCCCChHHH-----
Q 015435           83 LSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL--------------TIYIP-QPTWGNHPKV-----  142 (407)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd--------------~Vi~~-~p~y~~~~~~-----  142 (407)
                      ++++++...++..+++++|++  |+|+++++.+++  ...+.+||              +|+++ .|+|..+...     
T Consensus        91 ~ia~~l~~~~g~~~~~~~i~~--t~G~t~al~~~~--~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~  166 (444)
T 3if2_A           91 ALVGFFNRHYDWNLTSENIAL--TNGSQNAFFYLF--NLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQ  166 (444)
T ss_dssp             HHHHHHHHHHCCCCCGGGEEE--ESSHHHHHHHHH--HHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSC
T ss_pred             HHHHHHHhhcCCCCCHHHEEE--ecCcHHHHHHHH--HHHhCCCccccccccccccccceEEEeCCCCccchhhcccccc
Confidence            999999555555567799999  999999999995  33466887              78876 8999988773     


Q ss_pred             -HhhcCceeeEEEeecCC---CCCcChhhHHHHHHc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeec
Q 015435          143 -FTLAGLSVKTYRYYDPA---TRGLNFQGLLEDLRA-APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFD  217 (407)
Q Consensus       143 -~~~~G~~~~~v~~~~~~---~~~~d~~~l~~~i~~-~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D  217 (407)
                       +...|..++.++.+.++   ++++|++++++++.+ .++++++++ ++||||||.+++.+++++|+++|++||++||+|
T Consensus       167 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~D  245 (444)
T 3if2_A          167 HFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICC-SRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIID  245 (444)
T ss_dssp             CEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEe-CCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence             45678888888873111   247899999987432 255667666 899999999999999999999999999999999


Q ss_pred             cccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhH
Q 015435          218 SAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHG  297 (407)
Q Consensus       218 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (407)
                      |+|..+... ....  ..  .....+.++++.||||. +++|+|+||+  +++ +    .+...+.........+++.+.
T Consensus       246 e~~~~~~~~-~~~~--~~--~~~~~~~~i~~~S~sK~-~~~G~r~G~~--~~~-~----~l~~~~~~~~~~~~~~~~~~~  312 (444)
T 3if2_A          246 NAYGMPFPN-IIYS--DA--HLNWDNNTILCFSLSKI-GLPGMRTGII--VAD-A----KVIEAVSAMNAVVNLAPTRFG  312 (444)
T ss_dssp             CTTCTTTTC-CBCS--CC--CCCCCTTEEEEEESTTT-TCGGGCCEEE--ECC-H----HHHHHHHHHHHHHHSSCCCHH
T ss_pred             CCCCCcccc-cccc--cc--cccCCCCEEEEechhhc-cCCCCceEEE--EEC-H----HHHHHHHHHHHhccCCCChHH
Confidence            999753321 0000  00  01224678999999997 7899999999  454 4    455555555555556788899


Q ss_pred             HHHHHHHhcChhhHHhHHHHHHH-HHHHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEecC-----CCHHHHHHhHh
Q 015435          298 ASIVATILKDSTMYKEWTLELKA-MADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTG-----LNSEQVAFMTK  370 (407)
Q Consensus       298 ~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~  370 (407)
                      +.++..+++...+    .....+ .++.++++++.+.+.|.+. +. ..+.+..+.++++.|+.     .+.+.+...|.
T Consensus       313 ~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~  387 (444)
T 3if2_A          313 AAIATPLVANDRI----KQLSDNEIKPFYQKQATLAVKLLKQALGD-YPLMIHKPEGAIFLWLWFKDLPISTLDLYERLK  387 (444)
T ss_dssp             HHHHHHHHHTSHH----HHHHHHTHHHHHHHHHHHHHHHHHHHSSS-SSEEEECCCBSSEEEEEETTCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCceEecCCccEEEEEEcCCCCCCHHHHHHHHH
Confidence            9999998887642    233333 6677888888888888763 21 11566677888998873     45666666667


Q ss_pred             hccEEEcCC----------------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          371 EYHIYMTSD----------------G--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       371 ~~gi~~~~g----------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++||.+.||                +  ||+++. +++++++++++|+++++++
T Consensus       388 ~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~  440 (444)
T 3if2_A          388 AKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVREL  440 (444)
T ss_dssp             HTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             HCCeEEecchhhcCCCCCcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHH
Confidence            799998763                2  899987 8999999999999998753

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=100.00  E-value=9.7e-37  Score=287.17  Aligned_cols=323  Identities=13%  Similarity=0.144  Sum_probs=247.2

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      +++++|||+.|.+   .. +.++.+.+++.+.+.  .  ...| +..+..++|+++++++ +     +++++|++  |+|
T Consensus        24 ~~~~~idl~~~~~---~~-~~~~~v~~a~~~~~~--~--~~~y-~~~~~~~l~~~la~~~-~-----~~~~~i~~--~~g   86 (361)
T 3ftb_A           24 KGRELLDYSSNIN---PL-GIPKSFLNNIDEGIK--N--LGVY-PDVNYRRLNKSIENYL-K-----LKDIGIVL--GNG   86 (361)
T ss_dssp             ----CEETTCCCC---TT-CSCHHHHTTHHHHHH--G--GGSC-CCTTCHHHHHHHHHHH-T-----CCSCEEEE--ESS
T ss_pred             CCCCEEEecCCCC---CC-CCCHHHHHHHHHHHH--H--hcCC-CCccHHHHHHHHHHHh-C-----CCcceEEE--cCC
Confidence            5678999999974   22 445566666666664  2  4557 5678999999999999 3     23589999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      +++++.+++   ..+   |+|+++.|+|..+...++..|.+++.++++  ...+++++++++.+.  + ++++++ ++|+
T Consensus        87 ~t~al~~~~---~~~---d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~l~--~-~~~v~i-~~p~  154 (361)
T 3ftb_A           87 ASEIIELSI---SLF---EKILIIVPSYAEYEINAKKHGVSVVFSYLD--ENMCIDYEDIISKID--D-VDSVII-GNPN  154 (361)
T ss_dssp             HHHHHHHHH---TTC---SEEEEEESCCTHHHHHHHHTTCEEEEEECC--TTSCCCHHHHHHHTT--T-CSEEEE-ETTB
T ss_pred             HHHHHHHHH---HHc---CcEEEecCChHHHHHHHHHcCCeEEEeecC--cccCCCHHHHHHhcc--C-CCEEEE-eCCC
Confidence            999999984   333   999999999999999999999999999983  335688899999987  4 777776 8999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      ||||.+++.+++++|+++|++||+++|+||+|.++.++ ..   .+........+++++++|+||.++++|+|+||+  +
T Consensus       155 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~---~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~--~  228 (361)
T 3ftb_A          155 NPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PS---SSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYG--I  228 (361)
T ss_dssp             TTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TT---SSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEE--E
T ss_pred             CCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cc---cchhHhcccCCCEEEEeeChhhcCCCCcceeEE--E
Confidence            99999999999999999999999999999999988875 11   111112234578899999999999999999998  5


Q ss_pred             ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-c
Q 015435          269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-H  347 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~  347 (407)
                      +.++++.+.    +.....  .++++.+++.++..++++.       +++++.+++++++++++.+.|++.+.   +. +
T Consensus       229 ~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~  292 (361)
T 3ftb_A          229 TNNKEIAAK----IKAKQN--PWNINCFAEMAAINCLKDT-------NYIEESLLWIKKERKRFIEELNKIGF---IKRV  292 (361)
T ss_dssp             ESCHHHHHH----HHTTSC--TTCSCHHHHHHHHHTSSCH-------HHHHHHHHHHHHHHHHHHHHHHHSSS---EEEE
T ss_pred             eCCHHHHHH----HHhhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHhCCC---Ccee
Confidence            466654444    443333  3478889999999988863       55778889999999999999998743   66 5


Q ss_pred             ccCCceeEEecC---CCHHHHHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          348 IIKQIGMFTFTG---LNSEQVAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       348 ~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ..+.+++ .|+.   .+.+.+...|.++||.+.+|        +  ||+++  ++++++++.+.|+++.+.
T Consensus       293 ~~~~~~~-~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~  360 (361)
T 3ftb_A          293 FSPHANF-VLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVENN  360 (361)
T ss_dssp             ECCSSSE-EEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCeE-EEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHhc
Confidence            6666654 4443   35555555555579999875        2  88877  567788888888887764

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=100.00  E-value=1.9e-37  Score=291.59  Aligned_cols=315  Identities=19%  Similarity=0.241  Sum_probs=239.8

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      .++|||+.|++  +.+  .|+.+      ++    ....+|++ .+..++|+++++++ +     +++++|++  |+|++
T Consensus        29 ~~~i~l~~~~~--~~~--~~~~v------a~----~~~~~Y~~-~~~~~lr~~la~~~-~-----~~~~~v~~--~~G~~   85 (356)
T 1fg7_A           29 NGDVWLNANEY--PTA--VEFQL------TQ----QTLNRYPE-CQPKAVIENYAQYA-G-----VKPEQVLV--SRGAD   85 (356)
T ss_dssp             TCSEECSSCCC--SSC--CCCCC------CC----CCTTSCCC-SSCHHHHHHHHHHH-T-----SCGGGEEE--ESHHH
T ss_pred             CceEEeeCCCC--CCC--CCHhH------hh----hhhccCCC-ccHHHHHHHHHHHh-C-----CChHHEEE--cCCHH
Confidence            47899999984  233  33333      12    13566855 46899999999999 4     23479999  99999


Q ss_pred             cHHHHHHHHHHhhcCC-CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          111 GSLRVGAEFLARHYHQ-LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~g-d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      +++.++++  ..+.+| |+|+++.|+|..+...++..|.+++.+|..  +++.+|++++++.+.   +++++++ ++|||
T Consensus        86 ~ai~~~~~--~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~v~l-~~p~n  157 (356)
T 1fg7_A           86 EGIELLIR--AFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD---GVKVVYV-CSPNN  157 (356)
T ss_dssp             HHHHHHHH--HHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT---TEEEEEE-ESSCT
T ss_pred             HHHHHHHH--HHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc---CCCEEEE-eCCCC
Confidence            99999853  336789 999999999999999999999999999883  456789999988775   4566666 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||.+++.+++++|+++|+ +|+++|+||+|.++...   ....+   +....+++++++|+||.+|++|+|+||+  ++
T Consensus       158 ptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~---~~~~~---~~~~~~~~i~~~s~sK~~g~~G~r~G~~--~~  228 (356)
T 1fg7_A          158 PTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ---ASLAG---WLAEYPHLAILRTLSKAFALAGLRCGFT--LA  228 (356)
T ss_dssp             TTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG---GCSGG---GTTTCTTEEEEEESSSTTCCGGGCCEEE--EE
T ss_pred             CCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC---CcHHH---HHhhCCCEEEEecchHhhcCchhhhEEE--Ee
Confidence            9999999999999999999 99999999999988721   11111   2233467899999999999999999999  56


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      + ++    +.+.+......  ++++.++|.++..++++..    + +++++.+++++++++++.+.|++.+.   +....
T Consensus       229 ~-~~----~~~~l~~~~~~--~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~  293 (356)
T 1fg7_A          229 N-EE----VINLLMKVIAP--YPLSTPVADIAAQALSPQG----I-VAMRERVAQIIAEREYLIAALKEIPC---VEQVF  293 (356)
T ss_dssp             C-HH----HHHHHHHHSCS--SCSCHHHHHHHHHHTSHHH----H-HHHHHHHHHHHHHHHHHHHHHHHSTT---EEEEC
T ss_pred             C-HH----HHHHHHHhcCC--CCCCHHHHHHHHHHhcCcc----H-HHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEC
Confidence            4 44    44444444332  3788899999998887542    1 23678888999999999999998762   32334


Q ss_pred             CCceeEEecCC-CHHHHHHhHhhccEEEcC-C------C--eEEecCCCCCChhHHHHHHHHH
Q 015435          350 KQIGMFTFTGL-NSEQVAFMTKEYHIYMTS-D------G--RISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       350 ~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~-g------g--Ris~~~~~~e~i~~~~~~l~~~  402 (407)
                      +.++.|.|+.+ +.+.+.+.|.++||.+.+ |      +  ||+++  +++++++++++|+++
T Consensus       294 ~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~--~~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          294 DSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG--TREESQRVIDALRAE  354 (356)
T ss_dssp             CCSSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTTEEEEECC--CHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC--CHHHHHHHHHHHHhh
Confidence            45667778766 455555555779999998 5      2  88887  568899998888753

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=100.00  E-value=2.4e-36  Score=281.75  Aligned_cols=314  Identities=17%  Similarity=0.201  Sum_probs=237.4

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      ..++.|+|+.+..    ..+.++.+.+++.+.+.    ....| |..+..++|+++++++ +     .++++|++  |+|
T Consensus        14 ~~~~~i~l~~n~~----~~~~~~~v~~a~~~~~~----~~~~y-~~~~~~~lr~~la~~~-~-----~~~~~i~~--t~G   76 (337)
T 3p1t_A           14 AAAQAVCLAFNEN----PEAVEPRVQAAIAAAAA----RINRY-PFDAEPRVMRKLAEHF-S-----CPEDNLML--VRG   76 (337)
T ss_dssp             CCCCCEECSSCCC----CSCCCHHHHHHHHHHGG----GTTSC-CTTHHHHHHHHHHHHH-T-----SCGGGEEE--ESH
T ss_pred             CCCCceEeeCCCC----CCCCCHHHHHHHHHhhh----hhccC-CCCchHHHHHHHHHHh-C-----cCHHHEEE--eCC
Confidence            3468999998862    22334444444444332    35667 5679999999999998 4     23479999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      +++++.+++   ..+ +||+|+++.|+|..+...++..|.+++.++.  ++++++|++++++.    .+++++++ ++|+
T Consensus        77 ~~~~l~~~~---~~~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~----~~~~~v~i-~~p~  145 (337)
T 3p1t_A           77 IDECFDRIS---AEF-SSMRFVTAWPGFDGYRARIAVSGLRHFEIGL--TDDLLLDPNDLAQV----SRDDCVVL-ANPS  145 (337)
T ss_dssp             HHHHHHHHH---HHS-TTSEEEEESSSCSHHHHHHTTSCCEEEEECB--CTTSSBCHHHHTTC----CTTEEEEE-ESSC
T ss_pred             HHHHHHHHH---Hhc-CCCeEEEeCCCcHHHHHHHHHcCCEEEEecC--CCCCCCCHHHHHhh----cCCCEEEE-eCCC
Confidence            999999984   334 8999999999999999999999999999998  34578999988874    34566655 9999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      ||||.+++.+++.+|   |+++++ +|+||+|+++...+..        .....+++++++|+||.+|++|+|+||+  +
T Consensus       146 nptG~~~~~~~l~~l---~~~~~~-~ivDea~~~~~~~~~~--------~~~~~~~~i~~~S~sK~~g~~G~r~G~~--~  211 (337)
T 3p1t_A          146 NPTGQALSAGELDQL---RQRAGK-LLIDETYVDYSSFRAR--------GLAYGENELVFRSFSKSYGLAGLRLGAL--F  211 (337)
T ss_dssp             TTTCCCCCHHHHHHH---HHHCSE-EEEECTTGGGSSCSSS--------CCCCBTTEEEEEESSSTTCCTTTCCEEE--E
T ss_pred             CCCCCCCCHHHHHHH---HHhCCc-EEEECCChhhcccccc--------ccccCCCEEEEeeCchhccCcchheEEE--E
Confidence            999999998776666   778886 5669999988764321        0123467899999999999999999999  4


Q ss_pred             ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 015435          269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI  348 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  348 (407)
                      ++ +    .+...+....  ...+++.+++.++..++++..       ..++.++++.++++++.+.|++.+    +.+.
T Consensus       212 ~~-~----~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~~~g----~~~~  273 (337)
T 3p1t_A          212 GP-S----ELIAAMKRKQ--WFCNVGTLDLHALEAALDNDR-------AREAHIAKTLAQRRRVADALRGLG----YRVA  273 (337)
T ss_dssp             CC-H----HHHHHHHTTS--CTTCSCHHHHHHHHHHHTCHH-------HHHHHHHHHHHHHHHHHHHHHHTT----CCBC
T ss_pred             eC-H----HHHHHHHhhc--CCCCCCHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHHHHHCc----CEEC
Confidence            55 4    3444454443  234778888998888888652       244555667778899999999886    6777


Q ss_pred             cCCceeEEecCCCHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHHH
Q 015435          349 IKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      .+.++++.|...+.+.+.++|.++||.+.+|.        ||+++  +++++++++++|+++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          274 SSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIG--REEDNDRLLAALAEYSD  335 (337)
T ss_dssp             CCSSSEEEEECTTTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEEEcCCHHHHHHHHHHCCeEEEECccCCCCCeEEEecC--CHHHHHHHHHHHHHHhh
Confidence            77787776665566667777788999998863        88887  67889999999988754

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=100.00  E-value=9.2e-36  Score=280.51  Aligned_cols=319  Identities=17%  Similarity=0.213  Sum_probs=240.2

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      .++++|||+.|.+   . .+.++.+.+++.+.+.+.......|+ ..+..++|+++++++ +     +++++|++  |+|
T Consensus        24 ~~~~~i~l~~~~~---~-~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~lr~~la~~~-g-----~~~~~i~~--t~g   90 (360)
T 3hdo_A           24 DIASWIKLNTNEN---P-YPPSPEVVKAILEELGPDGAALRIYP-SASSQKLREVAGELY-G-----FDPSWIIM--ANG   90 (360)
T ss_dssp             CCTTSEECSSCCC---S-SCCCHHHHHHHHHHHTTTCGGGGSCC-CSSCHHHHHHHHHHH-T-----CCGGGEEE--ESS
T ss_pred             cccceeeccCCCC---C-CCCCHHHHHHHHHHHhcccchhhcCC-CCchHHHHHHHHHHh-C-----cCcceEEE--cCC
Confidence            4578999999985   2 25566777777666651111245674 457799999999999 4     34589999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      +++++.+++.  ..+.+||+|+++.|+|.++...++..|.+++.++.+  +++.+  +++++.+    +++++++ ++|+
T Consensus        91 ~~~al~~~~~--~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~--~~l~~~~----~~~~v~i-~~p~  159 (360)
T 3hdo_A           91 SDEVLNNLIR--AFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLT--GDFRI--AGFPERY----EGKVFFL-TTPN  159 (360)
T ss_dssp             HHHHHHHHHH--HHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBC--TTSSB--TTCCSSB----CSSEEEE-ESSC
T ss_pred             HHHHHHHHHH--HHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCC--CCCCH--HHHHhhc----CCCEEEE-eCCC
Confidence            9999999953  447899999999999999999999999999999983  22333  4444322    3456555 8999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      ||||.+++.+++.+|   |+++|+++|+||+|.++...    .....   ....+++++++|+||.++++|+|+||+  +
T Consensus       160 nptG~~~~~~~l~~l---~~~~~~~li~De~~~~~~~~----~~~~~---~~~~~~~i~~~s~sK~~g~~G~r~G~~--~  227 (360)
T 3hdo_A          160 APLGPSFPLEYIDEL---ARRCAGMLVLDETYAEFAES----NALEL---VRRHENVVVTRTLSKSYSLAGMRIGLA--I  227 (360)
T ss_dssp             TTTCCCCCHHHHHHH---HHHBSSEEEEECTTGGGSSC----CCTHH---HHHCSSEEEEEESTTTTSCTTSCCEEE--E
T ss_pred             CCCCCCcCHHHHHHH---HHHCCCEEEEECChHhhCCc----chhHH---hccCCCEEEEecchHhhcCCccceeeE--e
Confidence            999999997665555   88999999999999987532    11222   234578899999999999999999999  4


Q ss_pred             ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 015435          269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI  348 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  348 (407)
                      + +++    +.+.+.....  .++++.+++.++..++++.       +++++.+++++++++++.+.|++.+    +.+.
T Consensus       228 ~-~~~----~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~  289 (360)
T 3hdo_A          228 A-RPE----VIAALDKIRD--HYNLDRLAQAACVAALRDQ-------AYLSECCRRIRETREWFTTELRSIG----YDVI  289 (360)
T ss_dssp             C-CHH----HHHHHHHHSC--SCCSCHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHHHTT----CEEC
T ss_pred             e-CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CEEc
Confidence            5 454    4444444433  3478889999999888864       4577888999999999999999886    6666


Q ss_pred             cCCceeEEec---CCCHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHHH
Q 015435          349 IKQIGMFTFT---GLNSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       349 ~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      .+.+. |.|+   +.+.+.+.+.|.++||.+.+++        ||+++  +++++++++++|+++-+
T Consensus       290 ~~~~~-~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~--~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          290 PSQGN-YLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG--TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             CCSSS-EEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC--CHHHHHHHHHHHHHHHC
T ss_pred             CCCcc-EEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHhc
Confidence            65554 4454   3456666666777999998852        99987  78999999999998764

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=100.00  E-value=3.7e-36  Score=283.69  Aligned_cols=339  Identities=16%  Similarity=0.140  Sum_probs=244.9

Q ss_pred             CchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCC
Q 015435           16 DPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPA   95 (407)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~   95 (407)
                      ..+.+..+.+.. +++++|||+.|.+  +.  +.++.+.+++.+.+.    ....|+ ..+..++|+++++++ +     
T Consensus        10 ~~~~~~~~~~~~-~~~~~idl~~~~~--~~--~~~~~v~~a~~~~~~----~~~~y~-~~~~~~l~~~la~~~-~-----   73 (364)
T 1lc5_A           10 GNIREPATVLGI-SPDQLLDFSANIN--PL--GMPVSVKRALIDNLD----CIERYP-DADYFHLHQALARHH-Q-----   73 (364)
T ss_dssp             CCCHHHHHHHTS-CGGGSEECSSCCC--TT--CCCHHHHHHHHHTGG----GGGSCC-CTTCHHHHHHHHHHH-T-----
T ss_pred             ccHHHHHHhcCC-CccceEEeccccC--CC--CCCHHHHHHHHHHHH----HhhcCC-CCCHHHHHHHHHHHH-C-----
Confidence            345555554432 3467999999974  22  334455555544443    245674 468999999999998 4     


Q ss_pred             CCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435           96 IKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA  175 (407)
Q Consensus        96 ~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~  175 (407)
                      +++++|++  |+|+++++.++++.   + +||+|+++.|+|.++...++..|.+++.+|...+.++.+ ++++.+.+.  
T Consensus        74 ~~~~~v~~--~~g~~~al~~~~~~---~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~--  144 (364)
T 1lc5_A           74 VPASWILA--GNGETESIFTVASG---L-KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALT--  144 (364)
T ss_dssp             SCGGGEEE--ESSHHHHHHHHHHH---H-CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCC--
T ss_pred             cCHHHEEE--CCCHHHHHHHHHHH---c-CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhcc--
Confidence            23479999  99999999998533   3 789999999999999999999999999999842222222 466666554  


Q ss_pred             CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ....   +....++++++.|+||.+
T Consensus       145 ~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~---~~~~~~~~i~~~s~sK~~  218 (364)
T 1lc5_A          145 PDLDCLFL-CTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET--GFIP---ALKDNPHIWVLRSLTKFY  218 (364)
T ss_dssp             TTCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC--CSGG---GCTTCTTEEEEEESTTTT
T ss_pred             CCCCEEEE-eCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc--chhh---HhccCCCEEEEEECchhh
Confidence            45677666 89999999999999999999999999999999999998886421  1111   113346789999999999


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDA  335 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (407)
                      +++|+|+||+  ++.++++.+.+    .....  .++++.+++.++..++++.       +++++.+++++++++++.+.
T Consensus       219 ~~~G~r~G~~--~~~~~~~~~~l----~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~  283 (364)
T 1lc5_A          219 AIPGLRLGYL--VNSDDAAMARM----RRQQM--PWSVNALAALAGEVALQDS-------AWQQATWHWLREEGARFYQA  283 (364)
T ss_dssp             TCTTTCCEEE--ECCCHHHHHHH----HHHSC--TTCSCHHHHHHHHHGGGCH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCccceEEE--EECCHHHHHHH----HHhCC--CCCCCHHHHHHHHHHHhCc-------HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999  53556554443    33332  3478888999999888863       45778889999999999999


Q ss_pred             HHhcCCCCCcccccCCceeEEecCCC--HHHHHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHH
Q 015435          336 LSARGTPGDWSHIIKQIGMFTFTGLN--SEQVAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       336 l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      |++.+.   +.+..+.+ .|.|+.+.  .+.+.+.|.++||.+.+|        +  ||+++  +++++++++++|++++
T Consensus       284 L~~~~~---~~~~~~~g-~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~  357 (364)
T 1lc5_A          284 LCQLPL---LTVYPGRA-NYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVL  357 (364)
T ss_dssp             HHTSTT---EEECCCSS-SEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred             HhcCCC---CEECCCCC-eEEEEECCCcHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence            988732   66555544 45555442  223444444579999874        2  88876  5678899999998887


Q ss_pred             Hhh
Q 015435          404 TRM  406 (407)
Q Consensus       404 ~~~  406 (407)
                      +++
T Consensus       358 ~~~  360 (364)
T 1lc5_A          358 TGI  360 (364)
T ss_dssp             ---
T ss_pred             hcc
Confidence            654

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=100.00  E-value=4.1e-36  Score=283.92  Aligned_cols=328  Identities=16%  Similarity=0.184  Sum_probs=245.9

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCccc
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTG  111 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~  111 (407)
                      ..|||+.|.+   . .+.++.+.+++.+.+.+.......|++..+ .++++++++++...++..+++++|++  |+|+++
T Consensus        31 ~~idl~~~~~---~-~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~--~~G~~~  103 (369)
T 3cq5_A           31 VDIRLNTNEN---P-YPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWA--ANGSNE  103 (369)
T ss_dssp             CSEECSSCCC---C-SCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEE--ESHHHH
T ss_pred             cceeccCCCC---C-CCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEE--CCChHH
Confidence            3599999974   2 244566777766666411112456866555 79999999997433333345689999  999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCC
Q 015435          112 SLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPT  191 (407)
Q Consensus       112 a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPt  191 (407)
                      ++.+++..  .+.+||+|++++|+|.++...++..|.+++.+|.  +.++.+|++++++.+.+. +++++++ ++|+|||
T Consensus       104 al~~~~~~--l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~npt  177 (369)
T 3cq5_A          104 ILQQLLQA--FGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSR--GADFRIDMDVALEEIRAK-QPDIVFV-TTPNNPT  177 (369)
T ss_dssp             HHHHHHHH--HCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEEC--CTTSSCCHHHHHHHHHHH-CCSEEEE-ESSCTTT
T ss_pred             HHHHHHHH--hcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecC--CcCCCCCHHHHHHHhhcc-CCCEEEE-eCCCCCC
Confidence            99998533  3679999999999999999999999999999997  345689999999999731 5677776 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC-cEEEEEecCccccccCCCcceeEEeec
Q 015435          192 GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG-ECLVAQSYAKNMGLYGERVGALSIVCK  270 (407)
Q Consensus       192 G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~s~sK~~~~~G~r~G~~~~v~~  270 (407)
                      |.+++.+++.+|   |+.+++++|+||+|..+.+..   ....   +.+..+ +++++.|+||.++++|+|+||+  +++
T Consensus       178 G~~~~~~~l~~l---~~~~~~~li~De~~~~~~~~~---~~~~---~~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~~~  246 (369)
T 3cq5_A          178 GDVTSLDDVERI---INVAPGIVIVDEAYAEFSPSP---SATT---LLEKYPTKLVVSRTMSKAFDFAGGRLGYF--VAN  246 (369)
T ss_dssp             CCCCCHHHHHHH---HHHCSSEEEEECTTGGGCCSC---CGGG---GTTTCTTTEEEEEESSSTTSCGGGCCEEE--EEC
T ss_pred             CCCCCHHHHHHH---HHhCCCEEEEECCchhhcCCc---chHH---HHhhCCCCEEEEEechHhcCCcccceEEE--EeC
Confidence            999997777776   556669999999999887531   1111   122334 7899999999999999999999  565


Q ss_pred             ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 015435          271 TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  350 (407)
                       ++    +.+.+.....  .++++.+.+.++..++++.       +++++.+++++++++++.+.|++.+    +.+..+
T Consensus       247 -~~----~~~~l~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~  308 (369)
T 3cq5_A          247 -PA----FIDAVMLVRL--PYHLSALSQAAAIVALRHS-------ADTLGTVEKLSVERVRVAARLEELG----YAVVPS  308 (369)
T ss_dssp             -TH----HHHHHHTTSC--TTCSCHHHHHHHHHHHHTH-------HHHHTHHHHHHHHHHHHHHHHHHHT----CEEECC
T ss_pred             -HH----HHHHHHHcCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHhCC----CEECCC
Confidence             33    4444444333  2368888899888888764       4467788889999999999998876    565554


Q ss_pred             CceeEEecCC--CHHHHHHhHhhccEEEcCCC-----eEEecCCCCCChhHHHHHHHHHHH
Q 015435          351 QIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG-----RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       351 ~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg-----Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      . +.|.|+.+  +.+.+.+.|.++||.+.+++     ||+++  +++++++++++|+++++
T Consensus       309 ~-~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~iRis~~--~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          309 E-SNFVFFGDFSDQHAAWQAFLDRGVLIRDVGIAGHLRTTIG--VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             S-SSEEEEECCSSHHHHHHHHHHTTEECBCCSCTTEEEEECC--CHHHHHHHHHHHHHHHT
T ss_pred             C-CeEEEEECCCCHHHHHHHHHHCCEEEEECCCCCeEEEEeC--CHHHHHHHHHHHHHHHh
Confidence            4 45666654  45555555667999999873     88887  67889999999998875

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=100.00  E-value=1.1e-39  Score=311.02  Aligned_cols=341  Identities=12%  Similarity=0.103  Sum_probs=259.6

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      .++|||+.|.+   +. +.++.+.+++.+.+.   ....+|.+.  ..++++++++++....+..+++++|++  |+|++
T Consensus        31 ~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--~~g~~   99 (392)
T 3b1d_A           31 PQLLPAWIADM---DF-EVMPEVKQAIHDYAE---QLVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVF--VEGVV   99 (392)
Confidence            48999999986   33 556666666666664   224567554  889999999998554554456789999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCC-CCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA-TRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      +++.++++.+  +.+||+|+++.|+|..+...++..|.+++.++..+++ ++.+|++++++.+.+ ++++++++ ++|+|
T Consensus       100 ~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-~~~~~v~~-~~~~n  175 (392)
T 3b1d_A          100 PAISIAIQAF--TKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE-NDVKLYLL-CNPHN  175 (392)
Confidence            9999995433  6789999999999999999999999999999884222 255899999998863 24566666 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc-CCcEEEEEecCccccccCCCcceeEEe
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD-GGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      |||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+... .++++++.|+||.++++|+|+||+  +
T Consensus       176 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~  251 (392)
T 3b1d_A          176 PGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGH--EHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYA--I  251 (392)
Confidence            999999999999999999999999999999999987642  12233222221 467899999999999999999999  5


Q ss_pred             ecChhhHHHHHHHHhhhhhccc-CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcc
Q 015435          269 CKTEDVASRVESQLKLVIRPMY-SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWS  346 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~  346 (407)
                      ++++++.+.    +........ .+++.++|.++..++++..      +++++.+++++++++++.+.|++ .+.   +.
T Consensus       252 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~  318 (392)
T 3b1d_A          252 IENPTLCAQ----FKHQQLVNNHHEVSSLGYIATETAYRYGK------PWLVALKAVLEENIQFAVEYFAQEAPR---LK  318 (392)
Confidence            765444443    433333332 2567788888887777532      45778888999999999999987 432   67


Q ss_pred             cccCCceeEEecCCC-----HHH-HHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHHH
Q 015435          347 HIIKQIGMFTFTGLN-----SEQ-VAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~-----~~~-~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      +..+.++++.|+.+.     ... ...+++++||.+.||        +  ||+++. +++++++++++|+++++
T Consensus       319 ~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          319 VMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCCLP  391 (392)
Confidence            778889999887653     223 344555789999875        1  999886 78999999999998875

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=100.00  E-value=8e-37  Score=290.71  Aligned_cols=329  Identities=12%  Similarity=0.080  Sum_probs=233.5

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhc--cccccccCCCCCCc-----HHHHHHHHHHHhCCCCCCCCC-C
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN--DQSRVKEYLPIVGL-----VDFNKLSAKLILGADSPAIKD-N   99 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~g~-----~~l~~~~a~~~~~~~~~~~~~-~   99 (407)
                      .+++++|||+.|.+   +. +.| +.+..+......  ......+|++..|.     +++|+++++++. .++..+.+ +
T Consensus        19 ~~~~~~i~l~~g~p---~~-~~~-~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~   92 (391)
T 3bwn_A           19 PMSDFVVNLDHGDP---TA-YEE-YWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDR   92 (391)
T ss_dssp             CTTTSCEECSSCCC---GG-GHH-HHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSS
T ss_pred             cCCCCeeEcCCCCC---CC-CCC-HHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCC
Confidence            35678999999985   32 333 333332211110  11134679889998     999999999984 45555555 5


Q ss_pred             ceEEeecCCcccHHHHHHHHHHhhcCCC----eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435          100 RVTTVQCLSGTGSLRVGAEFLARHYHQL----TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA  175 (407)
Q Consensus       100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd----~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~  175 (407)
                      +|++  |+|+++++.+++..  .+.+||    +|++++|+|..+...++..|.+++.++++ .+  +++        .  
T Consensus        93 ~i~~--t~G~~~al~~~~~~--l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-~~--~l~--------~--  155 (391)
T 3bwn_A           93 YIVV--GTGSTQLCQAAVHA--LSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGD-AW--GFD--------K--  155 (391)
T ss_dssp             EEEE--EEHHHHHHHHHHHH--HHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEE-ST--TCC--------C--
T ss_pred             eEEE--eCChHHHHHHHHHH--hcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCC-HH--HcC--------C--
Confidence            8999  99999999999543  367999    99999999999999999999999999884 32  222        1  


Q ss_pred             CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      ++++++++ ++||||||.+++     +|++.++.++++||+||+|..   ..    ..++   ....+++++++||||.|
T Consensus       156 ~~~k~v~l-~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~---~~----~~~l---~~~~~~~i~~~S~SK~~  219 (391)
T 3bwn_A          156 KGPYIELV-TSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW---PH----YTPI---TRRQDHDIMLFTFSKIT  219 (391)
T ss_dssp             CSCEEEEE-ESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS---TT----TSCC---CCCBCCSEEEEEHHHHH
T ss_pred             CCCEEEEE-CCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC---CC----CCcc---ccCCCCeEEEEechhhc
Confidence            45677666 999999999996     354422333499999999973   11    0111   11346899999999999


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhH----HhHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMY----KEWTLELKAMADRIISMRQQ  331 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~  331 (407)
                      |++|+|+||+  +++++++.+    .+.........+++.++|.++..++++....    +.+.+++++.++++++++++
T Consensus       220 g~~GlRiG~~--~~~~~~l~~----~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (391)
T 3bwn_A          220 GHAGSRIGWA--LVKDKEVAK----KMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEK  293 (391)
T ss_dssp             SCGGGCEEEE--EECCHHHHH----HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHH
T ss_pred             CCCccceEEE--EecCHHHHH----HHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHH
Confidence            9999999999  564555444    4444444334588999999999888754200    00125678889999999999


Q ss_pred             HHHHHHhcCCCCCccccc-------------CCceeEEecCCC-HHHHHHhHhhccEEEcCC-------C--eEEecCCC
Q 015435          332 LFDALSARGTPGDWSHII-------------KQIGMFTFTGLN-SEQVAFMTKEYHIYMTSD-------G--RISMAGLS  388 (407)
Q Consensus       332 l~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~g-------g--Ris~~~~~  388 (407)
                      +.+.|++.+.   +.+..             +.+|+|.|+++. .+.+.++++++||.+.||       +  |||++. +
T Consensus       294 l~~~L~~~~~---~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~-~  369 (391)
T 3bwn_A          294 LREVVKESDA---FTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLS-R  369 (391)
T ss_dssp             HHHHHHTCSS---EECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTEECEEGGGGTCCTTEEEEESCS-C
T ss_pred             HHHHHHhCCC---cccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCEEEccCCCCCCCCCEEEEEecC-C
Confidence            9999998731   44332             345668888764 356777888899999985       2  999996 8


Q ss_pred             CCChhHHHHHHHHHHHh
Q 015435          389 SKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~~  405 (407)
                      ++++++++++|++++++
T Consensus       370 ~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          370 EDVFNVFLERLANMKLI  386 (391)
T ss_dssp             HHHHHHHHHHHHSCC--
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88899999999987653

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=100.00  E-value=2e-35  Score=275.52  Aligned_cols=310  Identities=16%  Similarity=0.171  Sum_probs=231.4

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      +++|||+.|.+   .. +.++.+.+++.+.+.  ....+.|+. .+..++|+++++++ +..  .+++++|++  |+|++
T Consensus        19 ~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~-~~~~~lr~~la~~~-~~~--~~~~~~v~~--~~G~~   86 (335)
T 1uu1_A           19 RDKTYLALNEN---PF-PFPEDLVDEVFRRLN--SDALRIYYD-SPDEELIEKILSYL-DTD--FLSKNNVSV--GNGAD   86 (335)
T ss_dssp             CCSEEESSCCC---SS-CCCHHHHHHHHHTCC--GGGGGSCCC-SSCHHHHHHHHHHH-TCS--SCCGGGEEE--ESSHH
T ss_pred             CcceECCCCCC---CC-CCCHHHHHHHHHHhh--hhhhhcCCC-CchHHHHHHHHHHc-CCC--CCCHHHEEE--cCChH
Confidence            57899999974   22 445566666655552  123456744 57999999999999 422  344689999  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP  190 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP  190 (407)
                      +++.+++   ..+  ||+|+++ |+|..+...++..|.+++.+|.+  .++.+|++++       ++++++++ ++||||
T Consensus        87 ~al~~~~---~~~--gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l-------~~~~~v~l-~~p~np  150 (335)
T 1uu1_A           87 EIIYVMM---LMF--DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT--KDLRIPEVNV-------GEGDVVFI-PNPNNP  150 (335)
T ss_dssp             HHHHHHH---HHS--SEEEECS-SSCHHHHHHHHHHTCEEEECCCC--TTSCCCCCCC-------CTTEEEEE-ESSCTT
T ss_pred             HHHHHHH---HHh--CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC--CCCCCCHHHc-------CCCCEEEE-eCCCCC
Confidence            9999984   233  8999999 99999999999999999999883  3467888887       24677776 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435          191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK  270 (407)
Q Consensus       191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~  270 (407)
                      ||.+++.+++++|+++|   | ++|+||+|.++...+    ...   +....+++++++|+||.+|++|+|+||+  +++
T Consensus       151 tG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~~----~~~---~~~~~~~~i~~~s~sK~~g~~G~r~G~~--~~~  217 (335)
T 1uu1_A          151 TGHVFEREEIERILKTG---A-FVALDEAYYEFHGES----YVD---FLKKYENLAVIRTFSKAFSLAAQRVGYV--VAS  217 (335)
T ss_dssp             TCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCCC----CGG---GGGTCSSEEEEEESTTTTTCGGGCCEEE--EEC
T ss_pred             CCCCCCHHHHHHHHHhC---C-EEEEECcchhhcchh----HHH---HhhhCCCEEEEecchhhcCCcccCeEEE--EeC
Confidence            99999999999998877   7 899999998876431    111   1233567899999999999999999999  564


Q ss_pred             ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 015435          271 TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  350 (407)
                       +++    .+.+.....  .++++.+++.++..++++.       ++.++.+++++++++++.+.|++.|    +.+.+ 
T Consensus       218 -~~~----~~~l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~-  278 (335)
T 1uu1_A          218 -EKF----IDAYNRVRL--PFNVSYVSQMFAKVALDHR-------EIFEERTKFIVEERERMKSALREMG----YRITD-  278 (335)
T ss_dssp             -HHH----HHHHHHHSC--TTCSCHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHT----CCBCC-
T ss_pred             -HHH----HHHHHHhcC--CCCcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----cEEcC-
Confidence             444    444443332  2478889999999888763       4466778889999999999998876    55443 


Q ss_pred             CceeEEecCCC---HHHHHHhHhhccEEEcCCC---eEEecCCCCCChhHHHHHHHHH
Q 015435          351 QIGMFTFTGLN---SEQVAFMTKEYHIYMTSDG---RISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       351 ~~~~~~~~~~~---~~~~~~~l~~~gi~~~~gg---Ris~~~~~~e~i~~~~~~l~~~  402 (407)
                      .++.|.|+.+.   .+.+.+.|.++||.+.++.   ||+++.  ++++++++++|+++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~iRis~~~--~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          279 SRGNFVFVFMEKEEKERLLEHLRTKNVAVRSFREGVRITIGK--REENDMILRELEVF  334 (335)
T ss_dssp             CCSSEEEEECCTHHHHHHHHHHHHHTEEEEEETTEEEEECCC--HHHHHHHHHHHHCC
T ss_pred             CCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCCeEEEEeCC--HHHHHHHHHHHHhh
Confidence            45667787664   3344444556899998743   999874  56799998888754

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=100.00  E-value=2.8e-34  Score=269.32  Aligned_cols=314  Identities=12%  Similarity=0.118  Sum_probs=228.3

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      ++++|||+.|.+    ..+.++.+.+++.+.+.    ....|++..+ .++|+++++++ +     +++++|++  |+|+
T Consensus        14 g~~~id~~~~~~----~~~~~~~v~~a~~~~~~----~~~~y~~~~~-~~lr~~la~~~-~-----~~~~~i~~--t~g~   76 (350)
T 3fkd_A           14 SSEIVNFSTTVW----TDGDKDHLEKHLVENLN----CIRHYPEPDA-GTLRQMLAKRN-S-----VDNNAILV--TNGP   76 (350)
T ss_dssp             --CCEECSCCSC----CCSCCHHHHHHHHHTGG----GGGSCCCTTC-HHHHHHHHHHT-T-----CCGGGEEE--ESHH
T ss_pred             cccEEEccCCCC----CCCCCHHHHHHHHHhHh----HHhcCCCCcH-HHHHHHHHHHh-C-----cCHHHEEE--cCCH
Confidence            479999999974    22445555555544442    3556866655 89999999988 4     33579999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      ++++.++++.   +. ||+|+++.|+|..+...++..|.+++.+++.++ ..++++          ++++++++ ++|+|
T Consensus        77 ~~al~~~~~~---l~-gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~----------~~~~~v~i-~~p~n  140 (350)
T 3fkd_A           77 TAAFYQIAQA---FR-GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNED-IGEADF----------SNMDFCWL-CNPNN  140 (350)
T ss_dssp             HHHHHHHHHH---TT-TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSC-GGGSCC----------TTCSEEEE-ESSCT
T ss_pred             HHHHHHHHHH---HC-CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCc-cccCcc----------CCCCEEEE-eCCCC
Confidence            9999999533   33 999999999999999999999999999998212 133443          35677777 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      |||.+++.+++.+|++.|+++  ++|+||+|.++.+.+... .    ......+++++++||||.++++|+|+||+  ++
T Consensus       141 ptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~-~----~~~~~~~~~i~~~S~sK~~~~~G~r~G~~--~~  211 (350)
T 3fkd_A          141 PDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIR-P----ADIKGRKNLVMVYSFSHAYGIPGLRIGYI--VA  211 (350)
T ss_dssp             TTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCC-G----GGGTTCSSEEEEEESHHHHSCGGGCCEEE--EC
T ss_pred             CcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchh-h----HHhhcCCCEEEEecCchhccCcchheEeE--Ee
Confidence            999999999999998888766  999999999988764311 1    12234578899999999999999999999  46


Q ss_pred             cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                       +++    +.+.+.....  .++++.+++.++..++++..      .+.+..++.. ++++++.+.|++.+.   +.+.+
T Consensus       212 -~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~-~~~~~l~~~L~~~~~---~~~~~  274 (350)
T 3fkd_A          212 -NKD----FMKRVAAFST--PWAVNALAIEAAKFILIHPA------QFTLPIRKWQ-RNTVDFITALNRLDG---VEVHP  274 (350)
T ss_dssp             -CHH----HHHHHHTTCC--TTCSCHHHHHHHHHHHHCTT------TTCCCHHHHH-HHHHHHHHHHHHSTT---EEECC
T ss_pred             -CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHHhCHH------HHHHHHHHHH-HHHHHHHHHHhcCCC---cEECC
Confidence             444    4444444433  34788899999998888653      1122333333 788899999988732   66666


Q ss_pred             CCceeEEecCC---CHHHHH-HhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          350 KQIGMFTFTGL---NSEQVA-FMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       350 ~~~~~~~~~~~---~~~~~~-~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +.+++ .|+.+   +.+.+. .+++++||.+.+|.          ||+++  +++++++++++|++++++
T Consensus       275 ~~~~~-~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          275 SGTTF-FLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             CSSSE-EEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHTC
T ss_pred             CCCcE-EEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHH
Confidence            55554 44432   455544 45454899998762          88887  568889999999988754

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=3.4e-33  Score=266.55  Aligned_cols=332  Identities=12%  Similarity=0.057  Sum_probs=232.8

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      +++++|||+.|.+   .+.+.++.+.+++.+.+.........|.+..|..++++++++++....+    .+++++  |+|
T Consensus        41 ~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~~~v~~--~~g  111 (398)
T 3a2b_A           41 DGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG----KEAAIL--FST  111 (398)
T ss_dssp             TTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----CSEEEE--ESS
T ss_pred             CCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEEE--ECC
Confidence            4568999999964   3434566666666666641111223455566776777777766633222    168999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC--CCcEEEEecC
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP--SGAIVLLHAC  186 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~--~~~~v~i~~~  186 (407)
                      |++++.+++  ...+.+||.|++++|+|..+...++..|.+++.+|.       +|++++++.+.+..  +++++++ ++
T Consensus       112 gt~a~~~~~--~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~-~~  181 (398)
T 3a2b_A          112 GFQSNLGPL--SCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICT-DG  181 (398)
T ss_dssp             HHHHHHHHH--HHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEE-ES
T ss_pred             HHHHHHHHH--HHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEE-eC
Confidence            999999984  444779999999999999999999999999998865       58899999998432  4556555 89


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc-EEEEEecCccccccCCCccee
Q 015435          187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE-CLVAQSYAKNMGLYGERVGAL  265 (407)
Q Consensus       187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~G~r~G~~  265 (407)
                      |+||||.+.+   +++|+++|++||+++|+||+|..+.++..   ..++.......++ +++++|+||.++++|   ||+
T Consensus       182 ~~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~  252 (398)
T 3a2b_A          182 IFSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHK---GAGTASHFGLNDDVDLIMGTFSKSLASLG---GFV  252 (398)
T ss_dssp             BCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG---GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEE
T ss_pred             CCCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCC---CCchHhhcCCCcCCeEEEecccccccCCC---cEE
Confidence            9999999886   78888889999999999999988765311   1112111122234 699999999999778   998


Q ss_pred             EEeecChhhHHHHHHHHhhh-hhcccCCCChhHHH-HHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015435          266 SIVCKTEDVASRVESQLKLV-IRPMYSSPPIHGAS-IVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG  343 (407)
Q Consensus       266 ~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  343 (407)
                        +++ +++.+.    +... ......+++.+.+. ++..+++..       ++.++.+++++++++++.+.|++.+   
T Consensus       253 --~~~-~~~~~~----l~~~~~~~~~~~~~~~~~~a~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g---  315 (398)
T 3a2b_A          253 --AGD-ADVIDF----LKHNARSVMFSASMTPASVASTLKALEII-------QNEPEHIEKLWKNTDYAKAQLLDHG---  315 (398)
T ss_dssp             --EEC-HHHHHH----HHHHCHHHHSSBCCCHHHHHHHHHHHHHH-------HHCTHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             --EeC-HHHHHH----HHHhcccceecCCCCHHHHHHHHHHHHHH-------hhCHHHHHHHHHHHHHHHHHHHhcC---
Confidence              465 444443    3332 11222344455555 445566432       2356778889999999999999886   


Q ss_pred             CcccccCCceeEEecCCC----HHHHHHhHhhccEEEcCC---------C--eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          344 DWSHIIKQIGMFTFTGLN----SEQVAFMTKEYHIYMTSD---------G--RISMAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~~~~g---------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                       +.+..+. +++.|+.+.    .+.+.+.|.++||.+.++         +  ||+++. .+++++++++++|++++++++
T Consensus       316 -~~~~~~~-g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~  393 (398)
T 3a2b_A          316 -FDLGATE-SPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE  393 (398)
T ss_dssp             -CCBCSCC-SSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             -CCcCCCC-CCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence             5655565 467777553    333444444469999875         2  999885 488999999999999998764

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=100.00  E-value=9.6e-35  Score=279.15  Aligned_cols=330  Identities=12%  Similarity=0.058  Sum_probs=236.8

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCC-C---cHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIV-G---LVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-g---~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...+|+|+.|.+   +. +.++.+.+++.+.+.........|.+.. |   .+++|+++++++...++..+++++|++  
T Consensus        55 ~~~~i~l~~g~~---~~-~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~--  128 (427)
T 2hox_A           55 QGCSADVASGDG---LF-LEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF--  128 (427)
T ss_dssp             TTCCEECCSCCC---GG-GHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE--
T ss_pred             CCceEEecCcCC---CC-CCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEE--
Confidence            457899999985   32 3333444444444421111223488877 8   999999999999544444466789999  


Q ss_pred             cCCcccHHHHHHHHHHh--------hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC
Q 015435          106 CLSGTGSLRVGAEFLAR--------HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS  177 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~--------~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~  177 (407)
                      |+|+++++.+++  ...        +.+||+|+++.|+|..+...++..|.+++.+.        +|++++++.+.  ++
T Consensus       129 t~G~~~al~~~~--~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~--~~  196 (427)
T 2hox_A          129 GVGVTQLIHGLV--ISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWA--------GNAANYVNVSN--PE  196 (427)
T ss_dssp             ESHHHHHHHHHH--HHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEE--------EEGGGGTTCSC--GG
T ss_pred             eCCHHHHHHHHH--HHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeeec--------CCHHHHHHhhc--CC
Confidence            999999999994  444        67999999999999999999999999887543        46778877665  34


Q ss_pred             CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc
Q 015435          178 GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL  257 (407)
Q Consensus       178 ~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~  257 (407)
                      ++++++ ++||||||.+++ +.       ++  ++..|.|++|.+    +    ..++..+ . .+++++++||||.+++
T Consensus       197 ~k~v~l-~~p~NPtG~~~~-~~-------l~--~~~~i~d~~~~~----~----~~s~~~~-~-~~~~i~~~S~SK~~g~  255 (427)
T 2hox_A          197 QYIEMV-TSPNNPEGLLRH-AV-------IK--GCKSIYDMVYYW----P----HYTPIKY-K-ADEDILLFTMSKFTGH  255 (427)
T ss_dssp             GEEEEE-ESSCTTTCCCCC-CS-------ST--TCEEEEECTTCS----T----TTSCCCS-C-BCCSEEEEEHHHHTSC
T ss_pred             ceEEEE-cCCCCCcccccH-HH-------Hc--CCCEEEeecccC----C----CCCcccc-C-CCceEEEEeChhcCCC
Confidence            566666 899999999999 42       22  556777777642    1    1111111 1 5689999999999999


Q ss_pred             cCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh-hHH----hHHHHHHHHHHHHHHHHHHH
Q 015435          258 YGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST-MYK----EWTLELKAMADRIISMRQQL  332 (407)
Q Consensus       258 ~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~----~~~~~~~~~~~~~~~~~~~l  332 (407)
                      +|+|+||+  +++++++.+.    +.........+++.+.|.++..+|++.. ..+    .+.+++++.+++++++++++
T Consensus       256 ~G~RiG~~--~~~~~~l~~~----l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  329 (427)
T 2hox_A          256 SGSRFGWA--LIKDESVYNN----LLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI  329 (427)
T ss_dssp             GGGCCEEE--EECCHHHHHH----HHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEE--EECCHHHHHH----HHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence            99999999  6766665554    4444444455788999999888887531 000    12345777889999999999


Q ss_pred             HHHHHhc-CCCC----------CcccccCCceeEEecCCC---HHHHHHhHhhccEEEcCC-------C--eEEecCCCC
Q 015435          333 FDALSAR-GTPG----------DWSHIIKQIGMFTFTGLN---SEQVAFMTKEYHIYMTSD-------G--RISMAGLSS  389 (407)
Q Consensus       333 ~~~l~~~-~~~~----------~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~g-------g--Ris~~~~~~  389 (407)
                      .+.|++. +...          .+.+..|.+++|.|+++.   .+++..+++++||.+.||       +  |||++. ++
T Consensus       330 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~-~~  408 (427)
T 2hox_A          330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK-TQ  408 (427)
T ss_dssp             HHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS-CH
T ss_pred             HHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecC-CH
Confidence            9999886 3110          023346778999998774   234667777899999885       2  999997 88


Q ss_pred             CChhHHHHHHHHHHHh
Q 015435          390 KTVPHLTDAIHAAVTR  405 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~  405 (407)
                      +++++++++|++++++
T Consensus       409 e~l~~~l~~l~~~~~~  424 (427)
T 2hox_A          409 DDFDQLMYYLKDMVKA  424 (427)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            8999999999998753

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.98  E-value=4.4e-31  Score=251.86  Aligned_cols=333  Identities=11%  Similarity=0.040  Sum_probs=224.1

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc----cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ----SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      +++++|||+.|.+   .|.+.++.+.+++.+.+.+..    .....|+...+..++++.+++++ +.       ++.++ 
T Consensus        41 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-~~-------~~~i~-  108 (399)
T 3tqx_A           41 GEKEVLNFCANNY---LGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL-GT-------DDTIL-  108 (399)
T ss_dssp             TTEEEEECSSCCT---TSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH-TC-------SEEEE-
T ss_pred             CCeeEEEeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH-CC-------CcEEE-
Confidence            4578999999953   452345566666666654100    00111223445789999999988 43       23444 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC----CCcE
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP----SGAI  180 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~----~~~~  180 (407)
                       +++|++++..++  ...+.+||.|+++.|+|..+...++..|.+++.++.       .|++++++.+.+..    ++++
T Consensus       109 -~~sGt~a~~~~l--~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~  178 (399)
T 3tqx_A          109 -YSSCFDANGGLF--ETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKL  178 (399)
T ss_dssp             -ESCHHHHHHTTH--HHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEE
T ss_pred             -ECchHHHHHHHH--HHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceE
Confidence             455688988874  444789999999999999999999999999988875       46778888876321    4556


Q ss_pred             EEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC
Q 015435          181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE  260 (407)
Q Consensus       181 v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  260 (407)
                      +++ ++|+||||.+++   +++|+++|++||+++|+||+|.....+... . .....+....+..++++|+||.++  |+
T Consensus       179 v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~-~~~~~~~~~~~~di~~~s~sK~~~--g~  250 (399)
T 3tqx_A          179 IAT-DGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENG-R-GTPEYCGVADRVDILTGTLGKALG--GA  250 (399)
T ss_dssp             EEE-ESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTS-C-CHHHHHTCTTCCSEEEEESSSSSC--SS
T ss_pred             EEE-eCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCC-C-chHHhhCCCCCCcEEEecchHhcc--cC
Confidence            555 889999999988   889999999999999999999633222111 1 111111112355699999999998  45


Q ss_pred             CcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          261 RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       261 r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      +.||+  +++ +++.+.+........  ...+++...+.++...++...      ++.++.+++++++++++.+.|++.+
T Consensus       251 ~gG~~--~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~g  319 (399)
T 3tqx_A          251 SGGYT--SGH-KEIIEWLRNRSRPYL--FSNTVAPVIVATSLKVLELLK------TEGPQLRKQLQENSRYFRAGMEKLG  319 (399)
T ss_dssp             CCEEE--EEC-HHHHHHHHHHCHHHH--SSCCCCHHHHHHHHHHHHHHH------HTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEE--EcC-HHHHHHHHHhCccee--ccCCCcHHHHHHHHHHHHHHh------hccHHHHHHHHHHHHHHHHHHHHcC
Confidence            55998  455 444444333211111  223556666666666654321      3467888999999999999999987


Q ss_pred             CCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCC-------C----eEEec-CCCCCChhHHHHHHHHHHH
Q 015435          341 TPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSD-------G----RISMA-GLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g-------g----Ris~~-~~~~e~i~~~~~~l~~~l~  404 (407)
                          +.+..+.+++ .|+.+    +.+.+.+.|.++||.+.++       +    ||+++ ..+++++++++++|+++++
T Consensus       320 ----~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  394 (399)
T 3tqx_A          320 ----FQLVPGNHPI-IPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGK  394 (399)
T ss_dssp             ----CCBCCCSSSE-EEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ----CCcCCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence                6666666654 44433    2334444444579999853       2    89886 3588999999999999998


Q ss_pred             hhC
Q 015435          405 RMG  407 (407)
Q Consensus       405 ~~~  407 (407)
                      +++
T Consensus       395 ~~~  397 (399)
T 3tqx_A          395 KLG  397 (399)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            865

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.97  E-value=1.2e-30  Score=250.52  Aligned_cols=329  Identities=16%  Similarity=0.133  Sum_probs=232.4

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc----ccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS----RVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      +++|+|+.|.+    + +.|+.+.+++.+.+.....    ....|++  ..+..++++.+++++ +..    +++++++ 
T Consensus        27 ~~~i~l~~~~~----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~-~~~----~~~~v~~-   95 (420)
T 1t3i_A           27 HPLVYLDNAAT----S-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI-NAR----SPREIVY-   95 (420)
T ss_dssp             EECEECBTTTC----C-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT-TCS----CGGGEEE-
T ss_pred             CceEEecCCcc----C-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHc-CCC----CCCeEEE-
Confidence            45899998874    3 5566777776666641110    1234543  467889999999998 431    2478999 


Q ss_pred             ecCCcccHHHHHHHHHH--hhcCCCeEEecCCCCCC----hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCC
Q 015435          105 QCLSGTGSLRVGAEFLA--RHYHQLTIYIPQPTWGN----HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSG  178 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~--~~~~gd~Vi~~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~  178 (407)
                       |+|+++++.+++..+.  .+.+||+|+++.|+|..    +...++..|.+++.++.+  .++.+|++++++++.  +++
T Consensus        96 -~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~--~~~  170 (420)
T 1t3i_A           96 -TRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLS--EKT  170 (420)
T ss_dssp             -ESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCC--TTE
T ss_pred             -cCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhC--CCc
Confidence             9999999999953331  16799999999999998    456667889999999983  456799999999987  455


Q ss_pred             cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc
Q 015435          179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY  258 (407)
Q Consensus       179 ~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  258 (407)
                      +++++ ++|+||||.+++   +++|+++|++||+++|+|++|..+... .  +   +..+    +..+++.|+||.++.+
T Consensus       171 ~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~--~---~~~~----~~di~~~s~sK~~~~~  236 (420)
T 1t3i_A          171 KLVTV-VHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYP-L--D---VQLI----DCDWLVASGHKMCAPT  236 (420)
T ss_dssp             EEEEE-ESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC-C--C---HHHH----TCSEEEEEGGGTTSCT
T ss_pred             eEEEE-eCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCcc-C--c---hhhc----CCCEEEEehhhhcCCC
Confidence            66655 899999999988   788888899999999999998754431 1  1   1111    3568899999988877


Q ss_pred             CCCcceeEEeecChhhHHHHHHHHhhhhhc--------------------ccCCCChhHHHHHHH-HhcChhhHHhHHHH
Q 015435          259 GERVGALSIVCKTEDVASRVESQLKLVIRP--------------------MYSSPPIHGASIVAT-ILKDSTMYKEWTLE  317 (407)
Q Consensus       259 G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~  317 (407)
                      |  +||+  +++ ++    +.+.+......                    ...+++.+.+.++.. +++...     ...
T Consensus       237 g--~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~  302 (420)
T 1t3i_A          237 G--IGFL--YGK-EE----ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT-----DLG  302 (420)
T ss_dssp             T--CEEE--EEC-HH----HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH-----HHC
T ss_pred             c--eEEE--EEc-hH----HHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH-----HhH
Confidence            7  8998  465 43    44444332211                    112345555554433 333211     013


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC------ceeEEec--CCCHHHHHHhHhhccEEEcCC----------
Q 015435          318 LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ------IGMFTFT--GLNSEQVAFMTKEYHIYMTSD----------  379 (407)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~l~~~gi~~~~g----------  379 (407)
                      +++.+++++++++++.+.|++.+.   +.+..+.      ++++.|.  +.+.+.+.+.|.++||.+.++          
T Consensus       303 ~~~~~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~  379 (420)
T 1t3i_A          303 MENIHNYEVELTHYLWQGLGQIPQ---LRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRL  379 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTT---EEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCC---eEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHHHh
Confidence            567788899999999999998731   6655543      6666654  335566667777899999886          


Q ss_pred             ---C---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          380 ---G---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 ---g---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                         .   ||+++. .+++++++++++|+++++.+
T Consensus       380 ~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~  413 (420)
T 1t3i_A          380 FDASGSARASLYFYNTKEEIDLFLQSLQATIRFF  413 (420)
T ss_dssp             TTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence               2   999875 47789999999999998765

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.97  E-value=2.8e-30  Score=246.77  Aligned_cols=331  Identities=15%  Similarity=0.134  Sum_probs=232.5

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc------cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK------EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      ++++++|..+.+    + +.|+.+.+++.+.+.+.....+      .|.+..+..++++.+++++ +..    ++++|++
T Consensus        21 g~~~i~l~~~~~----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~~----~~~~v~~   90 (406)
T 1kmj_A           21 GLPLAYLDSAAS----A-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI-NAR----SAEELVF   90 (406)
T ss_dssp             TEECEECCTTTC----C-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT-TCS----CGGGEEE
T ss_pred             CCceEEecCCcc----C-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc-CCC----CCCeEEE
Confidence            346888888764    3 5566777777666651111111      1234567889999999988 431    2479999


Q ss_pred             eecCCcccHHHHHHHHHHh--hcCCCeEEecCCCCCChH----HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC
Q 015435          104 VQCLSGTGSLRVGAEFLAR--HYHQLTIYIPQPTWGNHP----KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS  177 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~--~~~gd~Vi~~~p~y~~~~----~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~  177 (407)
                        |+|+|+++.+++..+..  +.+||+|+++.|+|++..    ..++..|.+++.+|..  .++.+|++++++.+.  ++
T Consensus        91 --~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~--~~  164 (406)
T 1kmj_A           91 --VRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPTLFD--EK  164 (406)
T ss_dssp             --ESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC--TTSCBCGGGHHHHCC--TT
T ss_pred             --eCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecC--CCCCcCHHHHHHHhc--cC
Confidence              99999999999533311  579999999999987654    3456789999999983  356789999999987  45


Q ss_pred             CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc
Q 015435          178 GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL  257 (407)
Q Consensus       178 ~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~  257 (407)
                      ++++++ ++|+||||.+++   +++|+++|++||+++|+|++|..+... .  +   +..    .+..+++.|+||.+|+
T Consensus       165 ~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~~-~--~---~~~----~~~d~~~~s~~K~~g~  230 (406)
T 1kmj_A          165 TRLLAI-THVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHHP-V--D---VQA----LDCDFYVFSGHKLYGP  230 (406)
T ss_dssp             EEEEEE-ESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC-C--C---HHH----HTCSEEEEEGGGTTSC
T ss_pred             CeEEEE-eCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCCC-C--c---ccc----cCCCEEEEEchhccCC
Confidence            566655 899999999998   888888999999999999999754321 1  1   111    1457889999999987


Q ss_pred             cCCCcceeEEeecChhhHHHHHHHHhhhhh---------------------cccCCCChhHHHHHH-HHhcChhhHHhHH
Q 015435          258 YGERVGALSIVCKTEDVASRVESQLKLVIR---------------------PMYSSPPIHGASIVA-TILKDSTMYKEWT  315 (407)
Q Consensus       258 ~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~-~~l~~~~~~~~~~  315 (407)
                      +|  +||+  +++ ++    +.+.+.....                     ....+++.+.+.++. .+++...     .
T Consensus       231 ~G--~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~  296 (406)
T 1kmj_A          231 TG--IGIL--YVK-EA----LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS-----A  296 (406)
T ss_dssp             TT--CEEE--EEC-HH----HHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH-----H
T ss_pred             CC--cEEE--EEe-HH----HHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHH-----H
Confidence            77  7999  565 43    4444432221                     011234455555444 3333211     0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC--CceeEEec--CCCHHHHHHhHhhccEEEcCC------------
Q 015435          316 LELKAMADRIISMRQQLFDALSARGTPGDWSHIIK--QIGMFTFT--GLNSEQVAFMTKEYHIYMTSD------------  379 (407)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~l~~~gi~~~~g------------  379 (407)
                      ..+++.+++++++++++.+.|++.+.   +.+..+  .++++.|.  +.+.+.+.+.|.++||.+.+|            
T Consensus       297 ~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g  373 (406)
T 1kmj_A          297 LGLNNIAEYEQNLMHYALSQLESVPD---LTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYN  373 (406)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHTTSTT---EEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhcCCC---eEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhcC
Confidence            23567788899999999999988732   666666  67777764  345666667777789998753            


Q ss_pred             --C--eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          380 --G--RISMAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       380 --g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                        +  ||+++. .+++++++++++|+++++.++
T Consensus       374 ~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l~  406 (406)
T 1kmj_A          374 VPAMCRASLAMYNTHEEVDRLVTGLQRIHRLLG  406 (406)
T ss_dssp             CSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeecCCCHHHHHHHHHHHHHHHHhhC
Confidence              3  999875 377999999999999988764

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.97  E-value=4.2e-31  Score=254.34  Aligned_cols=342  Identities=13%  Similarity=0.126  Sum_probs=228.6

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccc-cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR-VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      .+..++||+.|.+..+.| +.++.+.+++.+.+. .... ...|.+..+..++++++++++.+    . .+++|++  |+
T Consensus        39 ~g~~~id~~~~~~~~~lg-~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~l~~~la~~~~~----~-~~~~v~~--~~  109 (426)
T 1sff_A           39 EGREYLDFAGGIAVLNTG-HLHPKVVAAVEAQLK-KLSHTCFQVLAYEPYLELCEIMNQKVPG----D-FAKKTLL--VT  109 (426)
T ss_dssp             TCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHTT-TCSCCCTTTEECHHHHHHHHHHHHHSSC----S-SCEEEEE--ES
T ss_pred             CCCEEEEcccChhhcccC-CCCHHHHHHHHHHHH-hCCCccccccCCHHHHHHHHHHHHhCCc----c-cccEEEE--eC
Confidence            467899999887433455 445566666666664 2111 12466778899999999999832    1 2378999  99


Q ss_pred             CcccHHHHHHHHHHh-hcCCCeEEecCCCCCChHH-HHhhcCce-------------eeEEEeecC---CCCCcChhhHH
Q 015435          108 SGTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPK-VFTLAGLS-------------VKTYRYYDP---ATRGLNFQGLL  169 (407)
Q Consensus       108 g~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~-~~~~~G~~-------------~~~v~~~~~---~~~~~d~~~l~  169 (407)
                      |+++++.+++++... ..+| +|++++|+|+++.. .+...|.+             ++.+++..+   .++.+|+++++
T Consensus       110 g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~  188 (426)
T 1sff_A          110 TGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIH  188 (426)
T ss_dssp             SHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHH
Confidence            999999999653323 3455 89999999987654 55555543             666666311   12347899999


Q ss_pred             HHHHcC---CCCcEEEEecCCCCCCC-CCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          170 EDLRAA---PSGAIVLLHACAHNPTG-VDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       170 ~~i~~~---~~~~~v~i~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +.+.+.   ++++++++.++++| || .+++.+++++|+++|++||++||+||+|.++.+.+.   ...+    +..+..
T Consensus       189 ~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~----~~~~~~  260 (426)
T 1sff_A          189 RIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAM----EQMGVA  260 (426)
T ss_dssp             HHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG----GGTTSC
T ss_pred             HHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc---hhhh----hhcCCC
Confidence            988731   23456666567788 99 789999999999999999999999999998876532   1111    111112


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                      +.+.||||.++. |+|+||+  +++     +.+.+.+.......+.+++.+++.++.++++...      +  +...+++
T Consensus       261 ~di~s~sK~~~~-GlriG~~--~~~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~------~--~~~~~~~  324 (426)
T 1sff_A          261 PDLTTFAKSIAG-GFPLAGV--TGR-----AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE------Q--ENLLQKA  324 (426)
T ss_dssp             CSEEEECGGGGT-SSCCEEE--EEE-----HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH------H--TTHHHHH
T ss_pred             CCEEEEcccccC-CCceEEE--EEc-----HHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH------h--cCHHHHH
Confidence            234499999996 9999999  576     4455545433233445678888888887765321      1  1344556


Q ss_pred             HHHHHHHHHHHHhcC--CCCCcccccCCceeEEecCCC------------HHHHHHhHhhccEEEcCCC------eEEec
Q 015435          326 ISMRQQLFDALSARG--TPGDWSHIIKQIGMFTFTGLN------------SEQVAFMTKEYHIYMTSDG------RISMA  385 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~~~~gg------Ris~~  385 (407)
                      +++++++.+.+++++  .+. +....+. |+|.|+.+.            .+.+...|.++||.+.+++      ||+++
T Consensus       325 ~~~~~~l~~~l~~~~~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~  402 (426)
T 1sff_A          325 NDLGQKLKDGLLAIAEKHPE-IGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVP  402 (426)
T ss_dssp             HHHHHHHHHHHHHHHHTCTT-EEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHhCCC-eEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECC
Confidence            666777777666542  110 2233444 456666541            2334444455799998863      88876


Q ss_pred             -CCCCCChhHHHHHHHHHHHhh
Q 015435          386 -GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       386 -~~~~e~i~~~~~~l~~~l~~~  406 (407)
                       ..+++++++++++|+++++++
T Consensus       403 ~~~~~~~i~~~~~~l~~~l~~~  424 (426)
T 1sff_A          403 LTIEDAQIRQGLEIISQCFDEA  424 (426)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHH
Confidence             358899999999999998764

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.97  E-value=4.7e-31  Score=252.36  Aligned_cols=332  Identities=14%  Similarity=0.120  Sum_probs=224.4

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++.++|++.|.+.++.| ..++.+.+++.+++. .......+.+.....++++.+++++ +.       +++++  |+
T Consensus        36 ~~g~~~lD~~~~~~~~~lg-~~~p~v~~a~~~~~~-~~~~~~~~~~~~~~~~l~~~la~~~-~~-------~~v~~--~~  103 (406)
T 4adb_A           36 QQGKEYIDFAGGIAVNALG-HAHPELREALNEQAS-KFWHTGNGYTNEPVLRLAKKLIDAT-FA-------DRVFF--CN  103 (406)
T ss_dssp             TTCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHT-TCSCCCTTSCCHHHHHHHHHHHHHS-SC-------SEEEE--ES
T ss_pred             CCCCEEEECCCchhhcccC-CCCHHHHHHHHHHHH-hcccccCCcCCHHHHHHHHHHHhhC-CC-------CeEEE--eC
Confidence            4568899999996544566 456667777767665 2111112223344677777788776 42       68999  99


Q ss_pred             CcccHHHHHHHHHHhh-----cCC-CeEEecCCCCCChHHHHhhcCc-------------eeeEEEeecCCCCCcChhhH
Q 015435          108 SGTGSLRVGAEFLARH-----YHQ-LTIYIPQPTWGNHPKVFTLAGL-------------SVKTYRYYDPATRGLNFQGL  168 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~-----~~g-d~Vi~~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~~l  168 (407)
                      ||++++.++++.+...     .+| |+|++++|+|+.+.......+.             ++..+|.       .|++++
T Consensus       104 gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l  176 (406)
T 4adb_A          104 SGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSA  176 (406)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHH
Confidence            9999999996544221     045 9999999999998665554443             2223322       378889


Q ss_pred             HHHHHcCCCCcEEEEecCCCCCCCCCC--CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          169 LEDLRAAPSGAIVLLHACAHNPTGVDP--TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       169 ~~~i~~~~~~~~v~i~~~p~NPtG~~~--~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      ++.+.  ++++++++ + |+||||.++  +.+++++|+++|++||++||+||+|.++.+.+.   ......+ ....+++
T Consensus       177 ~~~l~--~~~~~v~~-~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~-~~~~d~~  248 (406)
T 4adb_A          177 SALID--DSTCAVIV-E-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE---LYAYMHY-GVTPDLL  248 (406)
T ss_dssp             HTTCS--TTEEEEEE-C-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHHH-TCCCSEE
T ss_pred             HHHhc--CCeEEEEE-e-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch---hHHHHhc-CCCCCEE
Confidence            88876  45566555 5 899999988  999999999999999999999999998876542   2222222 2223344


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                         ||||.++ +|+|+||+  +++     +.+.+.+.......+.+++.+++.++..+++...        .++.+++++
T Consensus       249 ---t~sK~~~-~G~r~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~  309 (406)
T 4adb_A          249 ---TTAKALG-GGFPVGAL--LAT-----EECARVMTVGTHGTTYGGNPLASAVAGKVLELIN--------TPEMLNGVK  309 (406)
T ss_dssp             ---EECGGGG-TTSCCEEE--EEC-----HHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS--------SHHHHHHHH
T ss_pred             ---Eechhhc-CCCCeEEE--EEc-----HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH--------hcCHHHHHH
Confidence               6799999 99999998  566     5566666555445556788888888887776332        145667777


Q ss_pred             HHHHHHHHHHHhcCCC-CCcccccCCceeEEecCC------CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhH
Q 015435          327 SMRQQLFDALSARGTP-GDWSHIIKQIGMFTFTGL------NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPH  394 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~  394 (407)
                      ++++++.+.|++.+.. ..+..... .+.+.++.+      +.+.+.+.|.++||.+.+++    ||+++. .+++++++
T Consensus       310 ~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~  388 (406)
T 4adb_A          310 QRHDWFVERLNTINHRYGLFSEVRG-LGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTT  388 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEE-ETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEE-EEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHH
Confidence            7888888877765310 00111222 233444322      34555555555799999875    885443 47899999


Q ss_pred             HHHHHHHHHHhh
Q 015435          395 LTDAIHAAVTRM  406 (407)
Q Consensus       395 ~~~~l~~~l~~~  406 (407)
                      ++++|+++++++
T Consensus       389 ~~~~l~~~l~~~  400 (406)
T 4adb_A          389 GLDRFAAACEHF  400 (406)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.97  E-value=4.5e-30  Score=243.71  Aligned_cols=325  Identities=14%  Similarity=0.110  Sum_probs=221.6

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccc---cccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR---VKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      ++..+|||+.|.+   .+.+.++.+.+++.+.+. ....   ...|  ....+..++++.+++++ +.       ++.++
T Consensus        37 ~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~-------~~~i~  104 (384)
T 1bs0_A           37 DDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAE-QFGIGSGGSGHVSGYSVVHQALEEELAEWL-GY-------SRALL  104 (384)
T ss_dssp             TTEEEEECSCCCT---TSGGGCHHHHHHHHHHHH-HHCSCCCSBTTTTCCCHHHHHHHHHHHHHH-TC-------SEEEE
T ss_pred             CCceEEEeeccCc---cCCCCCHHHHHHHHHHHH-HhCCCCCCcCcccCChHHHHHHHHHHHHHh-CC-------CcEEE
Confidence            4568999998862   343445566666666664 1111   1123  44567899999999998 53       24555


Q ss_pred             eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEE
Q 015435          104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL  183 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i  183 (407)
                        +++|++++..++  ...+.+||.|+++.|+|..+...++..|.+++.+|.       .|++++++.+.+......+++
T Consensus       105 --~~sGt~a~~~~~--~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~  173 (384)
T 1bs0_A          105 --FISGFAANQAVI--AAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVV  173 (384)
T ss_dssp             --ESCHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEE
T ss_pred             --eCCcHHHHHHHH--HHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEE
Confidence              555589999885  334679999999999999999999999999988864       478999999984322234455


Q ss_pred             ecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435          184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG  263 (407)
Q Consensus       184 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  263 (407)
                      +++|+||||.+++   +++|+++|++||+++|+||+|..+.++.. .... ...+ . ....++++|+||.++++|   |
T Consensus       174 ~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~-~~~~-~-~~~di~~~s~sK~~~~~G---G  243 (384)
T 1bs0_A          174 TEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQ-GRGS-CWLQ-K-VKPELLVVTFGKGFGVSG---A  243 (384)
T ss_dssp             EESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGG-GCCH-HHHT-T-CCCSEEEEESSSTTSSCC---E
T ss_pred             EeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCC-CCch-HHhc-C-CCCcEEEeeccchhhccC---c
Confidence            5999999999998   77888889999999999999977654210 0111 1112 1 123489999999999766   8


Q ss_pred             eeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015435          264 ALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTP  342 (407)
Q Consensus       264 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~  342 (407)
                      |+  +++ +++.+.+........  ...+++.+.+.++..+++...      + +.++.+++++++++++.+.|++.+  
T Consensus       244 ~~--~~~-~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~al~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g--  310 (384)
T 1bs0_A          244 AV--LCS-STVADYLLQFARHLI--YSTSMPPAQAQALRASLAVIR------SDEGDARREKLAALITRFRAGVQDLP--  310 (384)
T ss_dssp             EE--EEC-HHHHHHHHHHCHHHH--SSBCCCHHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHHHHHHTTSS--
T ss_pred             EE--EeC-HHHHHHHHHhchhhh--cCCCCCHHHHHHHHHHHHHHh------ccccHHHHHHHHHHHHHHHHHHHhcC--
Confidence            98  464 554444333111111  122577777777776665321      1 456778889999999999999886  


Q ss_pred             CCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCC---------C--eEEecC-CCCCChhHHHHHHHHH
Q 015435          343 GDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSD---------G--RISMAG-LSSKTVPHLTDAIHAA  402 (407)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g---------g--Ris~~~-~~~e~i~~~~~~l~~~  402 (407)
                        +.+..+ .+.+.|+.+    +.+.+.+.|.++||.+.++         +  ||+++. .+++++++++++|+++
T Consensus       311 --~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          311 --FTLADS-CSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             --CEECSC-CSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             --CcccCC-CCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence              555543 444555544    2334444455579999864         2  888874 3789999999998764

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.97  E-value=7.3e-30  Score=242.98  Aligned_cols=330  Identities=10%  Similarity=0.065  Sum_probs=228.5

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+++++|++.+.+..+.| ..++.+.+++.+.+. .......+.+.....++++.+++++ +       .+++++  |+
T Consensus        33 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~-~~~~~~~~~~~~~~~~l~~~la~~~-g-------~~~v~~--~~  100 (392)
T 3ruy_A           33 PEGNRYMDLLSAYSAVNQG-HRHPKIINALIDQAN-RVTLTSRAFHSDQLGPWYEKVAKLT-N-------KEMVLP--MN  100 (392)
T ss_dssp             TTCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHT-TCSCCCTTSEETTHHHHHHHHHHHH-T-------CSEEEE--ES
T ss_pred             CCCCEEEEcCCChhhhccC-CCCHHHHHHHHHHHH-hccccccccCCHHHHHHHHHHHHhc-C-------CCEEEE--eC
Confidence            3568899999986543444 345667777766664 2111111223455778888898887 4       279999  99


Q ss_pred             CcccHHHHHHHHHHhh--------cCCCeEEecCCCCCChHHHHhhcCce-------------eeEEEeecCCCCCcChh
Q 015435          108 SGTGSLRVGAEFLARH--------YHQLTIYIPQPTWGNHPKVFTLAGLS-------------VKTYRYYDPATRGLNFQ  166 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~--------~~gd~Vi~~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~d~~  166 (407)
                      ||++++.++++++...        ..+|.|+++.|+|+++.......+..             +..++.       .|++
T Consensus       101 ~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~  173 (392)
T 3ruy_A          101 TGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLE  173 (392)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHH
T ss_pred             cHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHH
Confidence            9999999997654333        23679999999998776655543322             323322       2799


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHH-HHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQ-WEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      ++++++.  ++++++++ ++|+||||.+++.++ +++|+++|++||+++|+||+|.++.+.+..   ..... .....++
T Consensus       174 ~l~~~l~--~~~~~v~~-~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~---~~~~~-~~~~~d~  246 (392)
T 3ruy_A          174 ALKAAIT--PNTAAFIL-EPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKV---FACDW-DNVTPDM  246 (392)
T ss_dssp             HHHHHCC--TTEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSS---SGGGG-GTCCCSE
T ss_pred             HHHHHhc--cCeEEEEE-eCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccc---hhhhc-cCCCCCE
Confidence            9999987  55677666 789999999996555 999999999999999999999888765421   11111 1112233


Q ss_pred             EEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       246 i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +   +|||.++ +| +|+||+  +++     +.+.+.+........++++.+++.++..+++...      .  ++.+++
T Consensus       247 ~---~~SK~l~-gG~~~~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~--~~~~~~  307 (392)
T 3ruy_A          247 Y---ILGKALG-GGVFPISCA--AAN-----RDILGVFEPGSHGSTFGGNPLACAVSIAALEVLE------E--EKLTER  307 (392)
T ss_dssp             E---EECGGGG-TTTSCCEEE--EEC-----HHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHH------H--TTHHHH
T ss_pred             E---EEchhhh-CChhhhEEE--EEC-----HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH------h--hhHHHH
Confidence            3   6789876 46 999999  566     4555556555555556788888988888876431      1  567788


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEec-CCCHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHH
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT-GLNSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDA  398 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~  398 (407)
                      ++++++++.+.|++.+.+ .+....+.++++.|. +-+.+.+.+.|.++||.+.+++    ||+++. .+++++++++++
T Consensus       308 ~~~~~~~l~~~L~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~  386 (392)
T 3ruy_A          308 SLQLGEKLVGQLKEIDNP-MITEVRGKGLFIGIELNEPARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQK  386 (392)
T ss_dssp             HHHHHHHHHHHHTTCCCT-TEEEEEEETTEEEEEESSCSHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCC-CceEEEeeeeEEEEEEcchHHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            899999999999887532 134445566666654 2144445555557899999975    887443 478999999999


Q ss_pred             HHHHH
Q 015435          399 IHAAV  403 (407)
Q Consensus       399 l~~~l  403 (407)
                      |++++
T Consensus       387 l~~~l  391 (392)
T 3ruy_A          387 IKAVL  391 (392)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99876

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.97  E-value=8.5e-31  Score=249.86  Aligned_cols=329  Identities=13%  Similarity=0.115  Sum_probs=220.8

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ..+..++||+.|.+.++.| +.++.+.+++.+.+. ..... ..| +.....++++.+++++ +       .+++++  |
T Consensus        37 ~~g~~~ld~~~~~~~~~lg-~~~~~v~~a~~~~~~-~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~~--~  103 (397)
T 2ord_A           37 EKGNAYLDFTSGIAVNVLG-HSHPRLVEAIKDQAE-KLIHCSNLF-WNRPQMELAELLSKNT-F-------GGKVFF--A  103 (397)
T ss_dssp             TTCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHH-HCSCCCTTS-EEHHHHHHHHHHHHTT-T-------SCEEEE--E
T ss_pred             CCCCEEEECCccccccccC-CCCHHHHHHHHHHHH-hcccCcccc-CCHHHHHHHHHHHHhc-C-------CCeEEE--e
Confidence            3467899999885433455 445667777666664 11111 113 2334566777777766 3       278999  9


Q ss_pred             CCcccHHHHHHHHHHhhc----C-CCeEEecCCCCCChHH-HHhhcCce------------eeEEEeecCCCCCcChhhH
Q 015435          107 LSGTGSLRVGAEFLARHY----H-QLTIYIPQPTWGNHPK-VFTLAGLS------------VKTYRYYDPATRGLNFQGL  168 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~----~-gd~Vi~~~p~y~~~~~-~~~~~G~~------------~~~v~~~~~~~~~~d~~~l  168 (407)
                      +||++++.++++.+....    + ++.|++++|+|++... .+...|.+            ++.++.       .|++++
T Consensus       104 ~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l  176 (397)
T 2ord_A          104 NTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDL  176 (397)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHH
Confidence            999999999865442221    4 4789999999976544 67777765            555543       288999


Q ss_pred             HHHHHcCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEE
Q 015435          169 LEDLRAAPSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLV  247 (407)
Q Consensus       169 ~~~i~~~~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~  247 (407)
                      ++.+.  ++++++++ ++|+||||. +++.+++++|+++|++||++||+||+|.++.+.+.   ..++..+.. ..+++ 
T Consensus       177 ~~~l~--~~~~~v~~-~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~-~~d~~-  248 (397)
T 2ord_A          177 RRKMS--EDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK---LFAYQKYGV-VPDVL-  248 (397)
T ss_dssp             HHHCC--TTEEEEEE-CSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSHHHHHTC-CCSEE-
T ss_pred             HHHhh--cCeEEEEE-ecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc---chhhhhhCC-CCCee-
Confidence            99886  45667666 789999999 99999999999999999999999999988776532   223322221 12322 


Q ss_pred             EEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 015435          248 AQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIIS  327 (407)
Q Consensus       248 ~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  327 (407)
                        ||||.++ +|+|+||+  +++++     +. .+.......+++++.+++.++..+++...      +  ++.++++++
T Consensus       249 --s~sK~~~-~G~r~G~~--~~~~~-----~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~--~~~~~~~~~  309 (397)
T 2ord_A          249 --TTAKGLG-GGVPIGAV--IVNER-----AN-VLEPGDHGTTFGGNPLACRAGVTVIKELT------K--EGFLEEVEE  309 (397)
T ss_dssp             --EECGGGG-TTSCCEEE--EECST-----TC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHT------S--TTHHHHHHH
T ss_pred             --eeccccC-CCcCeEEE--EEchH-----hc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHH------h--CCHHHHHHH
Confidence              7899999 89999999  56632     22 33322223344678888888887775332      1  345677788


Q ss_pred             HHHHHHHHHHhc--CCCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCCC----eEEec-CCCCCChhHHH
Q 015435          328 MRQQLFDALSAR--GTPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSDG----RISMA-GLSSKTVPHLT  396 (407)
Q Consensus       328 ~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~~~~  396 (407)
                      +++++.+.|++.  +.+. +....+.+. |.++.+    +.+.+.+.|.++||.+.+++    ||+++ ..+++++++++
T Consensus       310 ~~~~l~~~L~~~~~~~~~-~~~~~~~g~-~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~  387 (397)
T 2ord_A          310 KGNYLMKKLQEMKEEYDV-VADVRGMGL-MIGIQFREEVSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAV  387 (397)
T ss_dssp             HHHHHHHHHHHHHHHCTT-EEEEEEETT-EEEEEECTTSCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCc-eEEEEEEeE-EEEEEECChHHHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHH
Confidence            888888888765  2211 112234444 444432    34555555555899999874    88854 24889999999


Q ss_pred             HHHHHHHHh
Q 015435          397 DAIHAAVTR  405 (407)
Q Consensus       397 ~~l~~~l~~  405 (407)
                      ++|++++++
T Consensus       388 ~~l~~~l~~  396 (397)
T 2ord_A          388 ETLKKVLQG  396 (397)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999998864

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.97  E-value=1.1e-29  Score=241.14  Aligned_cols=294  Identities=13%  Similarity=0.118  Sum_probs=209.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEEEe
Q 015435           78 VDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTYRY  155 (407)
Q Consensus        78 ~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~~  155 (407)
                      .++++++++++....+.. +++++++  |+|+++++.+++.  ..+.+||+|++++|+|.+  +...++..|.+++.++.
T Consensus        52 ~~~~~~~~~~la~~~g~~-~~~~v~~--~~g~t~a~~~~~~--~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~  126 (386)
T 2dr1_A           52 RKVHMDTVERLREFLEVE-KGEVLLV--PSSGTGIMEASIR--NGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEY  126 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCS-SSEEEEE--SSCHHHHHHHHHH--HHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCC-CCcEEEE--eCChHHHHHHHHH--HhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEec
Confidence            445555555442222221 2467999  9999999999953  337799999999999988  88888999999999998


Q ss_pred             ecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH
Q 015435          156 YDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV  235 (407)
Q Consensus       156 ~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~  235 (407)
                      +  .++.+|++++++.+.+.++++++++ ++|+||||.+.+   +++|+++|++||+++|+|++|..+... .  +    
T Consensus       127 ~--~~~~~d~~~l~~~l~~~~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~--~----  193 (386)
T 2dr1_A          127 E--PGKAVKPEDLDDALRKNPDVEAVTI-TYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD-I--K----  193 (386)
T ss_dssp             C--TTCCCCHHHHHHHHHHCTTCCEEEE-ESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC-C--C----
T ss_pred             C--CCCCCCHHHHHHHHhcCCCCcEEEE-EeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc-c--c----
Confidence            3  3567999999999964356777777 799999999875   788889999999999999999866542 1  1    


Q ss_pred             HHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHH------------HHhhh--hhcccCCCChhHHHHH
Q 015435          236 RMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVES------------QLKLV--IRPMYSSPPIHGASIV  301 (407)
Q Consensus       236 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~  301 (407)
                        + ...+..++++|+||.++.++ ++||+  +++ +++.+.+..            .+...  ......+++...+.++
T Consensus       194 --~-~~~~~di~~~s~sK~~~~~~-g~G~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  266 (386)
T 2dr1_A          194 --F-DKWGLDVVFSSSQKAFGVPP-GLAIG--AFS-ERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGI  266 (386)
T ss_dssp             --T-TTTTCSEEEEETTSTTCCCS-SCEEE--EEC-HHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHH
T ss_pred             --c-cccCCcEEEEeccccccCCC-ceEEE--EEC-HHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHH
Confidence              1 11245799999999998652 48998  565 444433310            01111  1233446777788877


Q ss_pred             HHHhcChhhHHhHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC---ceeEEecC----CCHHHHHHhHhhc
Q 015435          302 ATILKDSTMYKEWTL--ELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ---IGMFTFTG----LNSEQVAFMTKEY  372 (407)
Q Consensus       302 ~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~l~~~  372 (407)
                      ..+++..      .+  .+++.+++++++++++.+.|++.+    +.+..+.   .+.+.|+.    .+.+.+.+.|.++
T Consensus       267 ~~~l~~~------~~~g~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  336 (386)
T 2dr1_A          267 NVALRII------EKMGGKEKWLEMYEKRAKMVREGVREIG----LDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKR  336 (386)
T ss_dssp             HHHHHHH------HHTTCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHT
T ss_pred             HHHHHHH------HHhcCHHHHHHHHHHHHHHHHHHHHHcC----CeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHC
Confidence            7776532      12  266788899999999999999876    5555443   24455443    3555555444446


Q ss_pred             cEEEcCC------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          373 HIYMTSD------G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       373 gi~~~~g------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ||.+.++      +  ||+++. .+++++++++++|+++++++
T Consensus       337 gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  379 (386)
T 2dr1_A          337 GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINEL  379 (386)
T ss_dssp             TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence            9999885      2  999884 58899999999999998764

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.97  E-value=7.3e-31  Score=247.87  Aligned_cols=324  Identities=10%  Similarity=0.065  Sum_probs=222.3

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc-------cccccCCCCCCcHHHHHH-HHHHHhCCCCCCCCCCce
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ-------SRVKEYLPIVGLVDFNKL-SAKLILGADSPAIKDNRV  101 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~y~~~~g~~~l~~~-~a~~~~~~~~~~~~~~~i  101 (407)
                      .++.++|..|.+   .+ +.++.+.+++.+.+. ..       .....|.+..+..++++. +++++ +.       +++
T Consensus         6 ~~~~i~ld~~~~---~~-~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~-~~-------~~v   72 (371)
T 2e7j_A            6 TKDFINIDPLQT---GG-KLTEEARQALLEWGD-GYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL-GC-------DVA   72 (371)
T ss_dssp             --CCEECCHHHH---TC-CCCHHHHHHHHHC---------------------CCHHHHHHTHHHHHT-TS-------SEE
T ss_pred             CCCcEEeccccc---CC-CCCHHHHHHHHHHHh-hcccCCccccccchhhHHHHHHHHHHHHHHHHc-CC-------CEE
Confidence            356777877653   34 556666666665554 11       012235567889999999 99988 43       278


Q ss_pred             EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEE--eecCCCCCcChhhHHHHHHcC---C
Q 015435          102 TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYR--YYDPATRGLNFQGLLEDLRAA---P  176 (407)
Q Consensus       102 ~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~--~~~~~~~~~d~~~l~~~i~~~---~  176 (407)
                      ++  |+|+|+++.+++..+  +.+||+|++++|+|.++...++..|.+++.++  .  +.++.+|++++++.+.+.   +
T Consensus        73 ~~--~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~  146 (371)
T 2e7j_A           73 RV--TNGAREAKFAVMHSL--AKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTD--YPDYAITPENFAQTIEETKKRG  146 (371)
T ss_dssp             EE--ESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCC--TTTCCCCHHHHHHHHHHHTTTS
T ss_pred             EE--eCChHHHHHHHHHHH--hCCCCEEEEccCcchHHHHHHHHcCCeEEEeeccc--CCCCCcCHHHHHHHHHhhcccC
Confidence            88  999999999995443  77999999999999999999999999999998  6  335789999999998742   3


Q ss_pred             CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccc
Q 015435          177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMG  256 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~  256 (407)
                      +++++++ ++|+||||.+++   +++|+++|++||+++|+|++|..+... .  +   +..+    +..++++|+||.++
T Consensus       147 ~~~~v~~-~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~-~--~---~~~~----~~di~~~s~sK~~~  212 (371)
T 2e7j_A          147 EVVLALI-TYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP-V--S---LKEI----GADFIVGSGHKSMA  212 (371)
T ss_dssp             CEEEEEE-ESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC-C--C---HHHH----TCSEEEEEHHHHSS
T ss_pred             CeEEEEE-ECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCCC-C--C---hhhc----CCCEEEecCCcCCC
Confidence            4555554 999999999997   588888899999999999999876542 1  1   2111    23489999999988


Q ss_pred             ccCCCcceeEEeecChhhHHHHHHH-Hhhhhh--cc-----cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH--H
Q 015435          257 LYGERVGALSIVCKTEDVASRVESQ-LKLVIR--PM-----YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI--I  326 (407)
Q Consensus       257 ~~G~r~G~~~~v~~~~~~~~~~~~~-~~~~~~--~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~  326 (407)
                      .+ .|+||+  +++ ++    +.+. +.....  ..     ..+++...+.++...++...      .   +.++++  +
T Consensus       213 ~~-~~~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~---~~~~~~~~~  275 (371)
T 2e7j_A          213 AS-GPIGVM--GMK-EE----WAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVR------E---RIKRWDEEV  275 (371)
T ss_dssp             CC-SSCEEE--EEC-TT----TTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHH------H---HGGGHHHHH
T ss_pred             CC-CCcEEE--EEe-ch----hhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHH------H---HHHHHHHHH
Confidence            54 599999  566 33    3332 322221  11     22445554555544443221      1   556667  8


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccCC--ceeEEecCC-CHHHHHHhHhhccEEEcC--------C---C--e-EEecC--C
Q 015435          327 SMRQQLFDALSARGTPGDWSHIIKQ--IGMFTFTGL-NSEQVAFMTKEYHIYMTS--------D---G--R-ISMAG--L  387 (407)
Q Consensus       327 ~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~l~~~gi~~~~--------g---g--R-is~~~--~  387 (407)
                      ++++++.+.|++.+    +.+..+.  .+.+.|+.+ +.+.+.+.|.++||.+.|        |   +  | |+++.  .
T Consensus       276 ~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~  351 (371)
T 2e7j_A          276 EKARRFAAEMEKLG----IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGL  351 (371)
T ss_dssp             HHHHHHHHHHHHTT----CEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTC
T ss_pred             HHHHHHHHHHHHcC----cEEecCCCccCceEEEECCCHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCC
Confidence            88899999998875    5655442  234566655 344455555578998865        2   2  9 99985  4


Q ss_pred             CCCChhHHHHHHHHHHHhhC
Q 015435          388 SSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       388 ~~e~i~~~~~~l~~~l~~~~  407 (407)
                      +++++++++++|++++++++
T Consensus       352 ~~~~i~~~~~~l~~~~~~~~  371 (371)
T 2e7j_A          352 SDEEVDYVLNAFKEIIEKYS  371 (371)
T ss_dssp             CHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHHHhcC
Confidence            88999999999999998764

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.97  E-value=3.3e-29  Score=239.06  Aligned_cols=311  Identities=16%  Similarity=0.103  Sum_probs=218.3

Q ss_pred             CeeeeeeeeeecCCCccccc---hhHHHHHHHHhccccccccCCCCCCcH---HHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           32 VKLNLGVGAYRTEEGKPLVL---NVVRKAEQLLVNDQSRVKEYLPIVGLV---DFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~y~~~~g~~---~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      +..++++|.|   +. +.+.   +.+.+..+.+. +....+.|++ .|.+   ++++++++++ +.       +++++  
T Consensus        19 ~~~~~~~~~p---~~-~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~-~~~~~~~~l~~~ia~~~-g~-------~~~i~--   82 (404)
T 1e5e_A           19 KDQFGAAIPP---IY-QTSTFVFDNCQQGGNRFA-GQESGYIYTR-LGNPTVSNLEGKIAFLE-KT-------EACVA--   82 (404)
T ss_dssp             CCTTCCSSCC---CC-CCSBCCCSSHHHHHHHHT-TSSCSCCBTT-TCCHHHHHHHHHHHHHH-TC-------SEEEE--
T ss_pred             CCCCCCcCCC---Cc-CCCccccCCHHHHHHhhc-CCcCCccccC-CcChHHHHHHHHHHHHh-CC-------CcEEE--
Confidence            3456788876   44 3333   33334443333 2223456866 5665   8999999988 43       46777  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEE
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIV  181 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v  181 (407)
                      ++||++++.+++  ...+.+||+|+++.|.|.++..    .++..|.+++.++..       |++++++.+.  ++++++
T Consensus        83 ~~~g~~ai~~~~--~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~--~~t~~v  151 (404)
T 1e5e_A           83 TSSGMGAIAATV--LTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMK--PNTKIV  151 (404)
T ss_dssp             ESSHHHHHHHHH--HHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCC--TTEEEE
T ss_pred             eCChHHHHHHHH--HHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcC--CCCcEE
Confidence            888899999984  4447899999999999999888    678899999998762       7889999887  556777


Q ss_pred             EEecCCCCCCCCCCCHHHHHHHHHHHHH-cCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC
Q 015435          182 LLHACAHNPTGVDPTLEQWEQIRQLMRS-KGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE  260 (407)
Q Consensus       182 ~i~~~p~NPtG~~~~~~~l~~i~~~~~~-~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  260 (407)
                      ++ ++|+||||.+++   +++|+++|++ +|+++|+|++|..+.+..   .   +    . .+..+++.|+||.++++|+
T Consensus       152 ~l-~~p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~---~---~----~-~~~di~~~S~sK~~~~~g~  216 (404)
T 1e5e_A          152 YF-ETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN---P---V----D-FGVDVVVHSATKYINGHTD  216 (404)
T ss_dssp             EE-ESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC---G---G----G-GTCSEEEEETTTTTTCSSC
T ss_pred             EE-ECCCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC---c---c----c-cCCEEEEEcCccccCCCCC
Confidence            66 899999999985   8889999999 999999999999887631   1   1    1 2578999999999999999


Q ss_pred             Cc-ceeEEeecChhhHHHHHH-HHhhhhhcc-cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          261 RV-GALSIVCKTEDVASRVES-QLKLVIRPM-YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALS  337 (407)
Q Consensus       261 r~-G~~~~v~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  337 (407)
                      |+ ||+  +++     +.+.. .+......+ ..+.+.+.+.++...++...          ...++..++.+.+.+.++
T Consensus       217 ri~G~~--~~~-----~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~l~~~l~  279 (404)
T 1e5e_A          217 VVAGLI--CGK-----ADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLN----------IRMKAESENAMKVAEYLK  279 (404)
T ss_dssp             CCCEEE--EEC-----HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEE--EEC-----HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHHH----------HHHHHHHHHHHHHHHHHH
Confidence            98 998  566     33333 455444433 34677788888887776532          223334455556666665


Q ss_pred             hcCC------CC-----CcccccCC----ceeEEecCCC--HHHHHHhHhhccEEEcC----------------------
Q 015435          338 ARGT------PG-----DWSHIIKQ----IGMFTFTGLN--SEQVAFMTKEYHIYMTS----------------------  378 (407)
Q Consensus       338 ~~~~------~~-----~~~~~~~~----~~~~~~~~~~--~~~~~~~l~~~gi~~~~----------------------  378 (407)
                      +.+.      +.     .+.+..++    ++++.| .+.  .+.+.+++++.||.+..                      
T Consensus       280 ~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~  358 (404)
T 1e5e_A          280 SHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVP  358 (404)
T ss_dssp             TCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSC
T ss_pred             hCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCCHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCC
Confidence            5430      00     12333333    888887 443  24567788888874321                      


Q ss_pred             -------C---C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          379 -------D---G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       379 -------g---g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                             |   +  |||++.   |++++++++|+++++.
T Consensus       359 ~~~~~~~g~~~~~iRis~g~---e~~~~li~~l~~al~~  394 (404)
T 1e5e_A          359 KEEREAAGITDGMIRLSVGI---EDADELIADFKQGLDA  394 (404)
T ss_dssp             HHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence                   1   3  888884   8999999999998864

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.97  E-value=8.5e-30  Score=245.23  Aligned_cols=328  Identities=13%  Similarity=0.104  Sum_probs=225.2

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCC----CCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPI----VGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~----~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      +++++|||+.|.+   .|.+.++.+.+++.+.+.........|...    ....++++.+++++ +.       ++.++ 
T Consensus        62 ~g~~~id~~~~~~---lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~-g~-------~~~i~-  129 (427)
T 2w8t_A           62 RGKDTILLGTYNY---MGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY-GT-------TGAIV-  129 (427)
T ss_dssp             TTEEEEECSCCCT---TCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH-TC-------SEEEE-
T ss_pred             CCceEEEEECccc---ccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHh-CC-------CceEE-
Confidence            4567899999963   454456667777766665101112223223    34588999999988 53       35666 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC--CCcEEE
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP--SGAIVL  182 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~--~~~~v~  182 (407)
                       +++|++++..++.  ..+.+||.|+++.|+|..+...++..|.+++.++.       .|++++++.+.+..  ++++++
T Consensus       130 -~~sGs~a~~~al~--~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~  199 (427)
T 2w8t_A          130 -FSTGYMANLGIIS--TLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVV  199 (427)
T ss_dssp             -ESCHHHHHHHHHH--HHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEE
T ss_pred             -ecCcHHHHHHHHH--HhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEE
Confidence             7777888888743  34779999999999999999999999999988753       58999999998432  455655


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV  262 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  262 (407)
                      + ++++||||.+.+   +++|+++|++||++||+||+|..+.++......  ...+.-..+.++++.||||.+|++|   
T Consensus       200 ~-~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~--~~~~~~~~~~di~~~s~sK~~g~~g---  270 (427)
T 2w8t_A          200 L-EGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGV--YEAQGLEGQIDFVVGTFSKSVGTVG---  270 (427)
T ss_dssp             E-ESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCH--HHHTTCTTCCSEEEEESSSTTCSCC---
T ss_pred             E-cCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCch--HhhcCCCcCCcEEEecchhhhccCC---
Confidence            5 899999999887   888888999999999999999987764211111  1111112345899999999998766   


Q ss_pred             ceeEEeecChhhHHHHHHHHhhhhh-c-ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          263 GALSIVCKTEDVASRVESQLKLVIR-P-MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       263 G~~~~v~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      ||+  +++ +++.+.    +....+ . .+.+.+...+.++...++..       +..++.+++++++++++.+.|++.+
T Consensus       271 G~v--~~~-~~l~~~----l~~~~~~~~~~~~~~~~~~aa~~~al~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g  336 (427)
T 2w8t_A          271 GFV--VSN-HPKFEA----VRLACRPYIFTASLPPSVVATATTSIRKL-------MTAHEKRERLWSNARALHGGLKAMG  336 (427)
T ss_dssp             EEE--EEC-CTTGGG----GGGTCHHHHSSCCCCHHHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEE--EeC-HHHHHH----HHHhcccccccCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcC
Confidence            898  454 444333    332211 1 22345666666655565532       1135677889999999999999886


Q ss_pred             CCCCcccc-cC-CceeEEecCCC----HHHHHHhHhhccEEEcCC---------C--eEEecC-CCCCChhHHHHHHHHH
Q 015435          341 TPGDWSHI-IK-QIGMFTFTGLN----SEQVAFMTKEYHIYMTSD---------G--RISMAG-LSSKTVPHLTDAIHAA  402 (407)
Q Consensus       341 ~~~~~~~~-~~-~~~~~~~~~~~----~~~~~~~l~~~gi~~~~g---------g--Ris~~~-~~~e~i~~~~~~l~~~  402 (407)
                          +.+. .+ .++ +.|+.+.    ...+.+.|.++||.+.++         +  ||+++. .+++++++++++|+++
T Consensus       337 ----~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~  411 (427)
T 2w8t_A          337 ----FRLGTETCDSA-IVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAA  411 (427)
T ss_dssp             ----CEESCSSCCSS-EEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             ----CcccCCCCCCC-EEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence                5655 44 444 5555442    233444444569998764         2  888875 4789999999999999


Q ss_pred             HHhh
Q 015435          403 VTRM  406 (407)
Q Consensus       403 l~~~  406 (407)
                      ++++
T Consensus       412 l~~~  415 (427)
T 2w8t_A          412 GRAV  415 (427)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.97  E-value=1e-29  Score=242.73  Aligned_cols=328  Identities=14%  Similarity=0.104  Sum_probs=224.9

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc---ccCC--CCCCcHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV---KEYL--PIVGLVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~y~--~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      ++..+|||+.|.+   .|.+.++.+.+++.+.+. .....   ..|.  ...+..++++++++++ +.       ++.++
T Consensus        43 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~-------~~~i~  110 (401)
T 1fc4_A           43 DGSHVINFCANNY---LGLANHPDLIAAAKAGMD-SHGFGMASVRFICGTQDSHKELEQKLAAFL-GM-------EDAIL  110 (401)
T ss_dssp             TSCEEEECCCSCT---TSCTTCHHHHHHHHHHHH-HHCSCCCSCHHHHCCBHHHHHHHHHHHHHH-TC-------SEEEE
T ss_pred             CCccEEEeeccCc---ccccCCHHHHHHHHHHHH-HhCCCCCCCCcccCCcHHHHHHHHHHHHHh-CC-------CcEEE
Confidence            5678999999853   442235566666656554 11111   1231  2567889999999998 53       23444


Q ss_pred             eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-C---CCc
Q 015435          104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-P---SGA  179 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-~---~~~  179 (407)
                        +++|++++..++  ...+.+||.|+++.|+|..+...++..|.+++.++.       .|++++++.+.+. +   +++
T Consensus       111 --~~sGs~a~~~~~--~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~  179 (401)
T 1fc4_A          111 --YSSCFDANGGLF--ETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHV  179 (401)
T ss_dssp             --ESCHHHHHHTTH--HHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSE
T ss_pred             --eCChHHHHHHHH--HHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCce
Confidence              555677888874  334679999999999998888888999999988853       4788898888631 1   456


Q ss_pred             EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc-cccC-CCCCchhHHHHHHHHcCCcEEEEEecCccc-c
Q 015435          180 IVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ-GFAS-GSLDADAQSVRMFVADGGECLVAQSYAKNM-G  256 (407)
Q Consensus       180 ~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~-~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~  256 (407)
                      ++++ ++|+||||.+++   +++|+++|++||+++|+||+|+ ++.. .+.  ...+.  +.-..+..++++|+||.+ +
T Consensus       180 ~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~--~~~~~--~~~~~~~di~~~s~sK~~~~  251 (401)
T 1fc4_A          180 LIAT-DGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGR--GSHEY--CDVMGRVDIITGTLGKALGG  251 (401)
T ss_dssp             EEEE-ESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSC--CHHHH--TTCTTCCSEEEEESSSTTCS
T ss_pred             EEEE-eCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCC--ccHHH--cCCCcCCcEEEecchhhccC
Confidence            6666 999999999988   8888889999999999999995 7763 221  11111  111124579999999999 5


Q ss_pred             ccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          257 LYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL  336 (407)
Q Consensus       257 ~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  336 (407)
                      ++|   ||+  ++ ++++.+.+.......  ....+++.+.+.++...++..       +..++.+++++++++++.+.|
T Consensus       252 ~~g---G~~--~~-~~~~~~~l~~~~~~~--~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L  316 (401)
T 1fc4_A          252 ASG---GYT--AA-RKEVVEWLRQRSRPY--LFSNSLAPAIVAASIKVLEMV-------EAGSELRDRLWANARQFREQM  316 (401)
T ss_dssp             SSC---EEE--EE-CHHHHHHHHHHCHHH--HHSCCCCHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCC---EEE--Ec-CHHHHHHHHHhCcCc--eeCCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHH
Confidence            444   888  45 455544443321111  123467888888887776532       113567788899999999999


Q ss_pred             HhcCCCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCC-------C----eEEecC-CCCCChhHHHHHHH
Q 015435          337 SARGTPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSD-------G----RISMAG-LSSKTVPHLTDAIH  400 (407)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g-------g----Ris~~~-~~~e~i~~~~~~l~  400 (407)
                      ++.+    +.+.+ ..+.+.|+.+    +.+.+...|.++||.+.++       +    ||+++. .+++++++++++|+
T Consensus       317 ~~~g----~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  391 (401)
T 1fc4_A          317 SAAG----FTLAG-ADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFT  391 (401)
T ss_dssp             HHTT----CCBCC-SSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             HHcC----CcccC-CCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            9886    55554 4455666654    2334444455579999764       1    888873 47899999999999


Q ss_pred             HHHHhhC
Q 015435          401 AAVTRMG  407 (407)
Q Consensus       401 ~~l~~~~  407 (407)
                      +++++++
T Consensus       392 ~~~~~~~  398 (401)
T 1fc4_A          392 RIGKQLG  398 (401)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhC
Confidence            9998764

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.97  E-value=1.4e-30  Score=246.33  Aligned_cols=331  Identities=11%  Similarity=0.093  Sum_probs=220.8

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+..++||+.|.+..+.| +.++.+.+++.+.+.+.......| +..+..++++.+++++ +.      ++++++  |+
T Consensus        25 ~~g~~~ld~~~~~~~~~~g-~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~-g~------~~~v~~--~~   93 (375)
T 2eh6_A           25 EEGKEYLDFVSGIGVNSLG-HAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF-WT------EGKVFF--AN   93 (375)
T ss_dssp             TTCCEEEESSHHHHTCTTC-BSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS-SS------CEEEEE--ES
T ss_pred             CCCCEEEEcCCcccccccC-CCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc-CC------CCeEEE--eC
Confidence            3567899999998622233 245556666656554111112346 5567889999999987 42      278999  99


Q ss_pred             CcccHHHHHHHHHH-hh---cCC-CeEEecCCCCCChHHHHhhcCceee----EEEeecCCC---CCcChhhHHHHHHcC
Q 015435          108 SGTGSLRVGAEFLA-RH---YHQ-LTIYIPQPTWGNHPKVFTLAGLSVK----TYRYYDPAT---RGLNFQGLLEDLRAA  175 (407)
Q Consensus       108 g~t~a~~~~~~~~~-~~---~~g-d~Vi~~~p~y~~~~~~~~~~G~~~~----~v~~~~~~~---~~~d~~~l~~~i~~~  175 (407)
                      |+++++.++++.+. ..   .+| |+|++++|+|+.+...+...+...+    ..++. +..   ...|++++++.+.  
T Consensus        94 g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~l~--  170 (375)
T 2eh6_A           94 SGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLV-PGFSYAKLNDIDSVYKLLD--  170 (375)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCC-SSEEEECTTCHHHHHTTCC--
T ss_pred             chHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCC-CCceeCCCchHHHHHHHhc--
Confidence            99999999965432 23   678 9999999999988776654433221    01110 000   0148899988876  


Q ss_pred             CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435          176 PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN  254 (407)
Q Consensus       176 ~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
                      ++++++++ ++++||||.+ .+.+++++|+++|++||+++|+||+|.++...+.   ..++..+ ....+++   ||||.
T Consensus       171 ~~~~~v~~-~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~-~~~~d~~---s~SK~  242 (375)
T 2eh6_A          171 EETAGIII-EVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE---FYAYQHF-NLKPDVI---ALAKG  242 (375)
T ss_dssp             TTEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCSEE---EECGG
T ss_pred             CCeEEEEE-eCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---chhhhhc-CCCCCEE---EEccc
Confidence            45667666 7799999999 5788899999999999999999999998765431   1111111 1112333   78899


Q ss_pred             ccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          255 MGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       255 ~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                      ++ +|+|+||+  +++     +++.+.+.........+++.+.+.++..+++..          ++.+++++++++++.+
T Consensus       243 ~~-~g~~~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~~  304 (375)
T 2eh6_A          243 LG-GGVPIGAI--LAR-----EEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV----------EKLLPHVREVGNYFKE  304 (375)
T ss_dssp             GG-TTSCCEEE--EEE-----HHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred             cc-CCCCeEEE--EEc-----HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence            99 69999999  566     345554443222233466777777777666432          1566788889999999


Q ss_pred             HHHhcCCCCCcccccCCceeEEecCC--CHHHHHHhHhhccEEEcCCC----eEEec-CCCCCChhHHHHHHHHHH
Q 015435          335 ALSARGTPGDWSHIIKQIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG----RISMA-GLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       335 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~~~~~~l~~~l  403 (407)
                      .|++.+    .....+ .+.+.|+.+  +...+.+.|.++||.+.+++    ||+++ ..+++++++++++|++++
T Consensus       305 ~L~~~~----~~~~~~-~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l  375 (375)
T 2eh6_A          305 KLKELG----KGKVKG-RGLMLGLELERECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL  375 (375)
T ss_dssp             HHHHTT----SSEEEE-ETTEEEEECSSCCHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHh----cCCceE-EEEEEEEEEcCcHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            998876    222333 445666654  23344444445899998753    88876 357899999999998763

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.97  E-value=6.9e-30  Score=242.17  Aligned_cols=316  Identities=15%  Similarity=0.140  Sum_probs=222.0

Q ss_pred             cccchhHHHHHHHHhccccc-----cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh
Q 015435           48 PLVLNVVRKAEQLLVNDQSR-----VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR  122 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~-----~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~  122 (407)
                      +.++.+.+++.+.+.+....     ...|.+..+..++++.+++++ +     ++++++++  |+|+++++.+++..+..
T Consensus        12 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g-----~~~~~v~~--~~g~t~a~~~~~~~~~~   83 (384)
T 1eg5_A           12 RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL-G-----VSPSEIFF--TSCATESINWILKTVAE   83 (384)
T ss_dssp             CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH-T-----SCGGGEEE--ESCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc-C-----CCCCeEEE--ECCHHHHHHHHHHhhhh
Confidence            44666666666666411001     112333456789999999998 4     23478999  99999999999644421


Q ss_pred             --hcCCCeEEecCCCCCChHHHH---hhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCH
Q 015435          123 --HYHQLTIYIPQPTWGNHPKVF---TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTL  197 (407)
Q Consensus       123 --~~~gd~Vi~~~p~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~  197 (407)
                        ..+||+|++++|+|+++...+   +..|.+++.+|.+  .++.+|++++++.+.  ++++++++ ++|+||||.+++ 
T Consensus        84 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~-  157 (384)
T 1eg5_A           84 TFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD--SRGVVKLEELEKLVD--EDTFLVSI-MAANNEVGTIQP-  157 (384)
T ss_dssp             HTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC--TTSCBCHHHHHHHCC--TTEEEEEE-ESBCTTTCBBCC-
T ss_pred             hccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccC--CCCccCHHHHHHHhC--CCCeEEEE-ECCCCCcccccC-
Confidence              168999999999999886666   6789999999983  356799999999987  45667666 899999999998 


Q ss_pred             HHHHHHHHHHHHcC--ceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH
Q 015435          198 EQWEQIRQLMRSKG--LLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA  275 (407)
Q Consensus       198 ~~l~~i~~~~~~~~--~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~  275 (407)
                        +++|+++|++||  +++|+|++|+ +.....  +      + ...+..++++|+||.+|++|  +||+  +++++ + 
T Consensus       158 --~~~i~~l~~~~~~~~~li~Dea~~-~~~~~~--~------~-~~~~~di~~~s~sK~~g~~G--~G~~--~~~~~-~-  219 (384)
T 1eg5_A          158 --VEDVTRIVKKKNKETLVHVDAVQT-IGKIPF--S------L-EKLEVDYASFSAHKFHGPKG--VGIT--YIRKG-V-  219 (384)
T ss_dssp             --HHHHHHHHHHHCTTCEEEEECTTT-TTTSCC--C------C-TTTCCSEEEEEGGGGTSCTT--CEEE--EECTT-S-
T ss_pred             --HHHHHHHHHhcCCceEEEEEhhhh-cCCccc--C------c-hhcCCCEEEecHHHhcCCCc--eEEE--EEcCC-C-
Confidence              678888899999  9999999987 322111  1      1 11245788999999998878  7998  56632 1 


Q ss_pred             HHHHHHHhhh---hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC-
Q 015435          276 SRVESQLKLV---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ-  351 (407)
Q Consensus       276 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-  351 (407)
                       ++...+...   ......+++.+.+.++..+++..      .+.+++.+++++++++++.+.|++.+    +.+..+. 
T Consensus       220 -~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~  288 (384)
T 1eg5_A          220 -PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA------VEELSEAAKHMEKLRSKLVSGLMNLG----AHIITPLE  288 (384)
T ss_dssp             -CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHHHHHHHHHTTT----CEECSCTT
T ss_pred             -ccccccccCcccccccCCCCChHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHhCCCC----eEEeCCcc
Confidence             111111111   11233467788888777777642      24567888899999999999998855    5544331 


Q ss_pred             -----ceeEEecCCCHHHHHHhHhhccEEEcCC-------------------------C--eEEecC-CCCCChhHHHHH
Q 015435          352 -----IGMFTFTGLNSEQVAFMTKEYHIYMTSD-------------------------G--RISMAG-LSSKTVPHLTDA  398 (407)
Q Consensus       352 -----~~~~~~~~~~~~~~~~~l~~~gi~~~~g-------------------------g--Ris~~~-~~~e~i~~~~~~  398 (407)
                           ...|.+.+.+.+.+.+.|.++||.+.+|                         +  ||+++. .+++++++++++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~  368 (384)
T 1eg5_A          289 ISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKK  368 (384)
T ss_dssp             SBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHH
T ss_pred             cCCCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHH
Confidence                 1222333556666666667799999873                         2  899874 478999999999


Q ss_pred             HHHHHHhh
Q 015435          399 IHAAVTRM  406 (407)
Q Consensus       399 l~~~l~~~  406 (407)
                      |+++++++
T Consensus       369 l~~~~~~~  376 (384)
T 1eg5_A          369 IEEILSFL  376 (384)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99998764

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.97  E-value=2e-29  Score=241.33  Aligned_cols=328  Identities=15%  Similarity=0.062  Sum_probs=222.2

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc----CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE----YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      .+++++||+.+.+   .+.+.++.+++++.+++.+.....+.    |+......++++.+++++ +.       ++.++ 
T Consensus        57 ~g~~~ld~~s~~~---l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~-------~~~i~-  124 (409)
T 3kki_A           57 ASPDDIILQSNDY---LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT-GF-------DECLL-  124 (409)
T ss_dssp             CCTTSEECCCSCT---TCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH-TC-------SEEEE-
T ss_pred             CCCceEEeeccCc---cCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh-CC-------CeEEE-
Confidence            4678999988764   44455667777777777621111111    222344678999999988 43       34555 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEe
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH  184 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~  184 (407)
                       +++|++++..++  ...+.+||.|+++.|+|..+...+...|.+++.++.       .|++++++.+.+. +++++++ 
T Consensus       125 -~~sGt~a~~~~l--~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~-~~~~vi~-  192 (409)
T 3kki_A          125 -SQSGWNANVGLL--QTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRH-GPGIIVV-  192 (409)
T ss_dssp             -ESCHHHHHHHHH--HHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHH-CSCEEEE-
T ss_pred             -ecchHHHHHHHH--HHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhc-CCeEEEE-
Confidence             666689998884  444789999999999999999999999999987754       5899999999742 3466666 


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcce
Q 015435          185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGA  264 (407)
Q Consensus       185 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  264 (407)
                      ++|+||||.+.+   +++|+++|++||++||+||+|..+.++..  .......+....+..+++.|+||.++++|   ||
T Consensus       193 ~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~--g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g~  264 (409)
T 3kki_A          193 DSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPN--GAGLLAELGLTREVHFMTASLAKTFAYRA---GA  264 (409)
T ss_dssp             ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG--GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EE
T ss_pred             CCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCcchhhcCCCCCCCEEEeecchhhCCCc---eE
Confidence            899999999988   88899999999999999999987544311  11111112111234588999999998653   88


Q ss_pred             eEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435          265 LSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD  344 (407)
Q Consensus       265 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  344 (407)
                      +  ++ ++++.+.+........  ...+.+...+.++...++..       +..++++++++++++++.+.|++.+    
T Consensus       265 v--~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~aa~~aal~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----  328 (409)
T 3kki_A          265 I--WC-NNEVNRCVPFISYPAI--FSSTLLPYEAAGLETTLEII-------ESADNRRQHLDRMARKLRIGLSQLG----  328 (409)
T ss_dssp             E--EE-SSSGGGTHHHHCHHHH--HSBCCCHHHHHHHHHHHHHH-------HHCHHHHHHHHHHHHHHHHHHHTTT----
T ss_pred             E--EE-CHHHHHHHHHhCcCcc--ccCCCcHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcC----
Confidence            7  44 4554444433222111  12245555555665555432       2225778889999999999999887    


Q ss_pred             cccccCCceeEEecCC----CHHHHHHhHhhccEEEcC-------CC----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          345 WSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTS-------DG----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       345 ~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~-------gg----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.+. + .+.+.|+.+    +.+.+.+.|.++||.+.+       .+    ||+++. .+++++++++++|++++++.
T Consensus       329 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  404 (409)
T 3kki_A          329 LTIR-S-ESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG  404 (409)
T ss_dssp             CCCC-C-SSSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             CccC-C-CCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence            5544 2 344555533    123344444446999853       22    888864 47899999999999998764

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.97  E-value=5.4e-29  Score=237.68  Aligned_cols=334  Identities=14%  Similarity=0.049  Sum_probs=219.4

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccc----cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR----VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ++++++++.+..   .+.+.++.+.+++.+.+.+....    ...|....+..++|+++++++ +.      +++|++  
T Consensus        45 g~~~i~~~~~~~---~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~------~~~i~~--  112 (401)
T 2bwn_A           45 KQDITVWCGNDY---LGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH-QK------EAALVF--  112 (401)
T ss_dssp             EEEEEECSCSCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT-TC------SEEEEE--
T ss_pred             CCcEEEeeCCCc---ccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh-CC------CcEEEE--
Confidence            356788876542   24334556666666666410111    123555568999999999998 42      367777  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC--CCCcEEEE
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--PSGAIVLL  183 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--~~~~~v~i  183 (407)
                      ++|++ ++..+..++....+||.|+++.|+|..+...++..|.+++.++.+       |++++++.+.+.  ++++++++
T Consensus       113 ~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~  184 (401)
T 2bwn_A          113 SSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAF  184 (401)
T ss_dssp             SCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEE
T ss_pred             CCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEE
Confidence            77766 666664333224589999999999999999999999999998761       788888888643  24556555


Q ss_pred             ecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435          184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG  263 (407)
Q Consensus       184 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  263 (407)
                       ++|+||||.+++   +++|+++|++||+++|+|++|....++.......  .......+..++++|+||.++++|   |
T Consensus       185 -~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~--~~~~~~~~~~i~~~s~sK~~~~~G---G  255 (401)
T 2bwn_A          185 -ESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA--ERDGLMHRIDIFNGTLAKAYGVFG---G  255 (401)
T ss_dssp             -ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH--HHHTCGGGCSEEEEESSSTTCSCC---E
T ss_pred             -ecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCceee--eccCccccCcEEEeechhhccCCC---C
Confidence             999999999987   7888889999999999999998544431111111  111111134688999999999887   8


Q ss_pred             eeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015435          264 ALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG  343 (407)
Q Consensus       264 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  343 (407)
                      |+  +++ +++.+.+....... . ...+.+.+.+.++..+++...   .  ...++.+++++++++++.+.|++.+   
T Consensus       256 ~~--~~~-~~~~~~l~~~~~~~-~-~~~~~~~~~~~a~~~al~~~~---~--~~~~~~~~~~~~~~~~l~~~L~~~g---  322 (401)
T 2bwn_A          256 YI--AAS-ARMVDAVRSYAPGF-I-FSTSLPPAIAAGAQASIAFLK---T--AEGQKLRDAQQMHAKVLKMRLKALG---  322 (401)
T ss_dssp             EE--EEC-HHHHHHHHHHCHHH-H-TSBCCCHHHHHHHHHHHHHHT---S--HHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             EE--ecC-HHHHHHHHHhCcCc-e-ecCCCCHHHHHHHHHHHHHHH---h--cccHHHHHHHHHHHHHHHHHHHHCC---
Confidence            98  454 55444433211111 1 122344566666665554221   0  1246778889999999999998876   


Q ss_pred             CcccccCCceeEEecCCC----HHHHH-HhHhhccEEEcCC-------C----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          344 DWSHIIKQIGMFTFTGLN----SEQVA-FMTKEYHIYMTSD-------G----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~----~~~~~-~~l~~~gi~~~~g-------g----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                       +.+..+.++ +.|+.+.    ...+. .+++++||.+.|+       |    ||+++. .+++++++++++|+++++++
T Consensus       323 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~  400 (401)
T 2bwn_A          323 -MPIIDHGSH-IVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC  400 (401)
T ss_dssp             -CCBCCCSSS-CEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred             -CcccCCCCC-eEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence             566666666 4555442    23344 4546789999652       2    888874 47899999999999998876


Q ss_pred             C
Q 015435          407 G  407 (407)
Q Consensus       407 ~  407 (407)
                      |
T Consensus       401 ~  401 (401)
T 2bwn_A          401 A  401 (401)
T ss_dssp             -
T ss_pred             C
Confidence            5

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.97  E-value=3.6e-29  Score=241.43  Aligned_cols=336  Identities=12%  Similarity=0.083  Sum_probs=215.1

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+++++|++.|.+..+.| +.++.+++++.+++.  ......| +.....++++++++++.+       .+++++  |+
T Consensus        52 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~a~~~~~~--~~~~~~~-~~~~~~~l~~~la~~~~~-------~~~v~~--~~  118 (434)
T 3l44_A           52 VDGNKYIDYLAAYGPIITG-HAHPHITKAITTAAE--NGVLYGT-PTALEVKFAKMLKEAMPA-------LDKVRF--VN  118 (434)
T ss_dssp             TTCCEEEECCGGGTTCSSC-BTCHHHHHHHHHHHH--HCSCCSS-CCHHHHHHHHHHHHHCTT-------CSEEEE--ES
T ss_pred             CCCCEEEECCCchhccccC-CCCHHHHHHHHHHHH--hCcCCCC-CCHHHHHHHHHHHHhCCC-------CCEEEE--eC
Confidence            4578999999998655666 567778888877776  2222334 556677888888887621       389999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc-eeeEEEeecCCCCC--------------cChhhHHHHH
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRG--------------LNFQGLLEDL  172 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~-~~~~v~~~~~~~~~--------------~d~~~l~~~i  172 (407)
                      ||+++++.+++++....+++.|++++|+|+++.......+. ....+..  +...+              .|++++++.+
T Consensus       119 sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~l  196 (434)
T 3l44_A          119 SGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGT--PDSAGVPQSIAQEVITVPFNNVETLKEAL  196 (434)
T ss_dssp             SHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCC--BSSTTCCHHHHTTEEEECTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCC--CCcCCCCCcCCCceEecCcccHHHHHHHH
Confidence            99999999976654445789999999999887665443322 1111111  00011              1889999988


Q ss_pred             HcCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          173 RAAPSGAIVLLHACAHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       173 ~~~~~~~~v~i~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                      .+.+.+..++++++++|++|.+. +++++++|.++|++||++||+||+|.+| ..+.   ......+ ....+   +.+|
T Consensus       197 ~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~---~~~~~~~-~~~~d---i~t~  268 (434)
T 3l44_A          197 DKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY---GGAQDLL-GVTPD---LTAL  268 (434)
T ss_dssp             HHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS---SCHHHHH-TCCCS---EEEE
T ss_pred             HhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc---cHHHHHc-CCCCC---eeeh
Confidence            74323344444344455566654 8999999999999999999999999988 4431   2222222 11122   4478


Q ss_pred             CccccccCCCcceeEEeecChhhHHHHHHHHhhh---hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435          252 AKNMGLYGERVGALSIVCKTEDVASRVESQLKLV---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       252 sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  328 (407)
                      ||.++ +|+|+||+  +++     +++.+.+...   ....+++++++++.++.++++...      +  +...++++++
T Consensus       269 sK~~~-~G~~iG~~--~~~-----~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~--~~~~~~~~~~  332 (434)
T 3l44_A          269 GKVIG-GGLPIGAY--GGK-----KEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQ------Q--EGLYEKLDEL  332 (434)
T ss_dssp             EGGGG-TTSSCEEE--EEC-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT------S--TTHHHHHHHH
T ss_pred             hhhhc-CCcCeeeE--EEc-----HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH------c--ccHHHHHHHH
Confidence            99999 89999999  565     4455555431   123345778888888887776321      0  1233444445


Q ss_pred             HHHHHHHHHh----cCCCCCcccccCCceeEEec--C--C---------C---HHHHHHhHhhccEEEcCCC----eEEe
Q 015435          329 RQQLFDALSA----RGTPGDWSHIIKQIGMFTFT--G--L---------N---SEQVAFMTKEYHIYMTSDG----RISM  384 (407)
Q Consensus       329 ~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~--~--~---------~---~~~~~~~l~~~gi~~~~gg----Ris~  384 (407)
                      ++++.+.|++    .+.   .....+.+.++.+.  .  .         +   ...+.+.|.++||.+.+++    |+++
T Consensus       333 ~~~l~~~L~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl~~  409 (434)
T 3l44_A          333 GATLEKGILEQAAKHNI---DITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFLTT  409 (434)
T ss_dssp             HHHHHHHHHHHHHHTTC---CEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEECCT
T ss_pred             HHHHHHHHHHHHHhCCC---CEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCCCcEEEec
Confidence            5555555544    342   22334445554442  1  1         1   1334444555899999976    6665


Q ss_pred             cCCCCCChhHHHHHHHHHHHhh
Q 015435          385 AGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       385 ~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      . .+++++++++++|+++++++
T Consensus       410 ~-~t~e~i~~~l~~l~~~l~~~  430 (434)
T 3l44_A          410 E-HTKEDIEYTIEAVGRAFAAL  430 (434)
T ss_dssp             T-CCHHHHHHHHHHHHHHHHHH
T ss_pred             c-cCHHHHHHHHHHHHHHHHHH
Confidence            5 48899999999999998754

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.97  E-value=2.1e-29  Score=242.78  Aligned_cols=347  Identities=10%  Similarity=0.037  Sum_probs=205.1

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+++++|++.|.+..+.| +.++.+++++.+++.  .  ...|.+..+..+.++++++++....+  .+.++|++  |+
T Consensus        26 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~--~--~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~   96 (430)
T 3i4j_A           26 DAGRRYLDGSSGALVANIG-HGRAEVGERMAAQAA--R--LPFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWA--VS   96 (430)
T ss_dssp             TTSCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHH--H--CCCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEE--ES
T ss_pred             CCCCEEEECCCchhccccC-CCCHHHHHHHHHHHH--h--cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eC
Confidence            3568899999997655666 557777887777775  2  12233333444455555555422221  23479999  99


Q ss_pred             CcccHHHHHHHHHHhh------cCCCeEEecCCCCCChHHHHhhcCc---------------eeeEEEeecCCC---CCc
Q 015435          108 SGTGSLRVGAEFLARH------YHQLTIYIPQPTWGNHPKVFTLAGL---------------SVKTYRYYDPAT---RGL  163 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~------~~gd~Vi~~~p~y~~~~~~~~~~G~---------------~~~~v~~~~~~~---~~~  163 (407)
                      ||+++++.+++++...      .+++.|++.+|+|+++.......+.               .+..++.  +..   ...
T Consensus        97 gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  174 (430)
T 3i4j_A           97 GGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPK--PDPARNGAE  174 (430)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECC--CCTTSCHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCC--CcccchhhH
Confidence            9999999997665433      4578999999999988765554433               2333333  111   123


Q ss_pred             ChhhHHHHHHcC-CCCcEEEEecCCCC-CCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435          164 NFQGLLEDLRAA-PSGAIVLLHACAHN-PTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA  240 (407)
Q Consensus       164 d~~~l~~~i~~~-~~~~~v~i~~~p~N-PtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~  240 (407)
                      |++++++.+.+. +.+..++++..++| ++|. +++.+++++|+++|++||++||+||+|.+|+..+.   ......+..
T Consensus       175 ~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~---~~~~~~~~~  251 (430)
T 3i4j_A          175 DAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS---PLALSRWSG  251 (430)
T ss_dssp             HHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGTTT
T ss_pred             HHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc---hhhhhhhcC
Confidence            568888888632 13344444345566 7887 67888999999999999999999999999876542   111111101


Q ss_pred             cCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhh----hhcccCCCChhHHHHHHHHhcChhhHHhHH
Q 015435          241 DGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLV----IRPMYSSPPIHGASIVATILKDSTMYKEWT  315 (407)
Q Consensus       241 ~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  315 (407)
                      ...+   +.+|||.++ .| +|+||+  +++ ++    +.+.+...    ....+++.+++++.++.++++...-    .
T Consensus       252 ~~~d---i~t~sK~l~-~G~~r~G~~--~~~-~~----i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~  316 (430)
T 3i4j_A          252 VTPD---IAVLGKGLA-AGYAPLAGL--LAA-PQ----VYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER----E  316 (430)
T ss_dssp             CCCS---EEEECGGGT-TTSSCCEEE--EEC-HH----HHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH----T
T ss_pred             CCCc---EEEEccccc-CCccccEEE--EEC-HH----HHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHc----c
Confidence            1122   336899999 59 999999  565 44    44444432    3334557888999988888864320    0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC------------HHHHHHhHhhccEEEcCC----
Q 015435          316 LELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN------------SEQVAFMTKEYHIYMTSD----  379 (407)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~~~~g----  379 (407)
                      +..++.++..+..++.+.+.+...+.   +....+.+.++.+.-.+            ...+.+.+.++||.+.|+    
T Consensus       317 ~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~  393 (430)
T 3i4j_A          317 DLTGAAKERGAQLLAGLQALQARFPQ---MMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAE  393 (430)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCTT---EEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCC---eEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEeccccc
Confidence            12233333333333444443333332   44455555544432111            133444455689999986    


Q ss_pred             ----C---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          380 ----G---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 ----g---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                          +   ||+++. .+++++++++++|+++++++
T Consensus       394 ~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  428 (430)
T 3i4j_A          394 PNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV  428 (430)
T ss_dssp             -----CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence                2   888763 47899999999999998764

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.97  E-value=5.6e-29  Score=238.87  Aligned_cols=331  Identities=13%  Similarity=0.091  Sum_probs=218.6

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ..++.++||+.|.+.++.| +.++.+++++.+++. ..... ..| +.....++++.+++++ +       .+++++  |
T Consensus        54 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~ai~~~~~-~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~~--~  120 (420)
T 2pb2_A           54 QQGKEYIDFAGGIAVTALG-HCHPALVEALKSQGE-TLWHTSNVF-TNEPALRLGRKLIDAT-F-------AERVLF--M  120 (420)
T ss_dssp             TTCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHT-TCCCCCTTS-CCHHHHHHHHHHHHHS-S-------CSEEEE--E
T ss_pred             CCCCEEEEccccccccccC-CCCHHHHHHHHHHHH-hcccccCcc-CCHHHHHHHHHHHhhC-C-------CCeEEE--e
Confidence            3568899999986544456 456677777777775 21111 113 3334556666666665 3       278999  9


Q ss_pred             CCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHH-HHhhcCce------------eeEEEeecCCCCCcChhh
Q 015435          107 LSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPK-VFTLAGLS------------VKTYRYYDPATRGLNFQG  167 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~-~~~~~G~~------------~~~v~~~~~~~~~~d~~~  167 (407)
                      +||++|++++++++....     +| ++|++++|+|+++.. .+...|.+            +..++.       .|+++
T Consensus       121 ~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~  193 (420)
T 2pb2_A          121 NSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHA  193 (420)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHH
Confidence            999999999975543221     56 489999999987754 34445543            333332       38899


Q ss_pred             HHHHHHcCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          168 LLEDLRAAPSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       168 l~~~i~~~~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      +++.+.  ++++++++ ++++|++|+ +++.+++++|+++|++||++||+||+|.++.+.+.   ......+ ....+++
T Consensus       194 le~~i~--~~~~~vi~-~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~---~~~~~~~-~~~~dii  266 (420)
T 2pb2_A          194 VKAVMD--DHTCAVVV-EPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD---LFAYMHY-GVTPDIL  266 (420)
T ss_dssp             HHHHCC--TTEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHHH-TCCCSEE
T ss_pred             HHHHhc--cCceEEEE-eCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc---HHHHHhc-CCCCCeE
Confidence            999887  45666666 777888885 59999999999999999999999999988876542   2222222 2223333


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII  326 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (407)
                         ||||.++ +|+|+||+  +++     +++.+.+.......+++++.+++.++...++...      +  ++..++++
T Consensus       267 ---t~sK~l~-~G~~iG~~--~~~-----~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~------~--~~~~~~~~  327 (420)
T 2pb2_A          267 ---TSAKALG-GGFPVSAM--LTT-----QEIASAFHVGSHGSTYGGNPLACAVAGAAFDIIN------T--PEVLQGIH  327 (420)
T ss_dssp             ---EECGGGG-TTSCCEEE--EEC-----HHHHTTCC----CCEECCCHHHHHHHHHHHHHHS------S--HHHHHHHH
T ss_pred             ---Eeccccc-CCCceEEE--EEh-----HHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHH------h--ccHHHHHH
Confidence               6899999 89999999  576     3344444432233445778888888877775332      1  24556777


Q ss_pred             HHHHHHHHHHHhc--CCCCCcccccCCceeEEecCC------CHHHHHHhHhhccEEEcCCC----eEEec-CCCCCChh
Q 015435          327 SMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFTGL------NSEQVAFMTKEYHIYMTSDG----RISMA-GLSSKTVP  393 (407)
Q Consensus       327 ~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~  393 (407)
                      ++++++.+.|+++  +.+ .+....+.+.+ .++.+      +.+.+.+.|.++||.+.+++    ||++. ..++++++
T Consensus       328 ~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~-~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~  405 (420)
T 2pb2_A          328 TKRQQFVQHLQAIDEQFD-IFSDIRGMGLL-IGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIH  405 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHC-CEEEEEEETTE-EEEEECGGGTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCC-CeEEEEecceE-EEEEECCCchHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHH
Confidence            7788888877765  211 02223444444 44432      34445444555899999875    88854 25889999


Q ss_pred             HHHHHHHHHHHhh
Q 015435          394 HLTDAIHAAVTRM  406 (407)
Q Consensus       394 ~~~~~l~~~l~~~  406 (407)
                      +++++|+++++++
T Consensus       406 ~~~~~l~~~l~~~  418 (420)
T 2pb2_A          406 EGMQRFAQAVGKV  418 (420)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998753

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.96  E-value=7e-29  Score=239.03  Aligned_cols=337  Identities=15%  Similarity=0.047  Sum_probs=219.9

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+++++|++.|.+..+.| +.++.+++++.+++.  ..... +.+.....++++++++++.+       .+++++  |+
T Consensus        50 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~A~~~~~~--~~~~~-~~~~~~~~~l~~~la~~~~~-------~~~v~~--~~  116 (429)
T 3k28_A           50 IDGNEYIDYVLSWGPLIHG-HANDRVVEALKAVAE--RGTSF-GAPTEIENKLAKLVIERVPS-------IEIVRM--VN  116 (429)
T ss_dssp             TTCCEEEESCGGGTTCTTC-BSCHHHHHHHHHHHH--HCSCC-SSCCHHHHHHHHHHHHHSTT-------CSEEEE--ES
T ss_pred             CCCCEEEECCCChhhcccC-CCCHHHHHHHHHHHh--hCcCc-CCCCHHHHHHHHHHHHhCCC-------CCEEEE--eC
Confidence            4578999999998765667 567788888878776  22222 34666778899999988731       389999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCceeeEEEeecCCCCC------------cChhhHHHHHHc
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLSVKTYRYYDPATRG------------LNFQGLLEDLRA  174 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~------------~d~~~l~~~i~~  174 (407)
                      ||+++++.+++++....+++.|++.+|+|+++..... ..|..+..++........            -|++++++.+.+
T Consensus       117 ~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~  196 (429)
T 3k28_A          117 SGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQ  196 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHh
Confidence            9999999997666544577899999999987655443 223222222221010000            178999998874


Q ss_pred             CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCc
Q 015435          175 APSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAK  253 (407)
Q Consensus       175 ~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  253 (407)
                      .+.+..++++.+++|++|.+ .+++++++|.++|++||++||+||+|.+| ..+   .......+ ....+   +.+|||
T Consensus       197 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~~~~-~~~~d---i~t~sK  268 (429)
T 3k28_A          197 FGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVA---YNCGQGYY-GVTPD---LTCLGK  268 (429)
T ss_dssp             HGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSS---TTHHHHHH-TCCCS---EEEECG
T ss_pred             CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchHHHHh-CCCCc---eehhhh
Confidence            33333444424444555655 46888999999999999999999999988 543   22222222 21222   347899


Q ss_pred             cccccCCCcceeEEeecChhhHHHHHHHHhhhh---hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 015435          254 NMGLYGERVGALSIVCKTEDVASRVESQLKLVI---RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQ  330 (407)
Q Consensus       254 ~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  330 (407)
                      .++ .|+|+||+  +++     +++.+.+....   ...+++++++++.++.++++..+         ++.+++++++++
T Consensus       269 ~~~-~G~~iG~~--~~~-----~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~---------~~~~~~~~~~~~  331 (429)
T 3k28_A          269 VIG-GGLPVGAY--GGK-----AEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT---------PESYVEFERKAE  331 (429)
T ss_dssp             GGG-TTSCCEEE--EEC-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC---------HHHHHHHHHHHH
T ss_pred             hhc-CCCCeEEE--EEc-----HHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence            998 59999999  566     44555554321   22345778899999988887542         344556666666


Q ss_pred             HHHHHHHhc----CCCCCcccccCCceeEEecCC-------------C---HHHHHHhHhhccEEEcCCC----eEEecC
Q 015435          331 QLFDALSAR----GTPGDWSHIIKQIGMFTFTGL-------------N---SEQVAFMTKEYHIYMTSDG----RISMAG  386 (407)
Q Consensus       331 ~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~~~~gg----Ris~~~  386 (407)
                      ++.+.|++.    +.   .....+.+.++.|.-.             +   .+.+.+.|.++||.+.|+|    |+++..
T Consensus       332 ~l~~~L~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~~~~~  408 (429)
T 3k28_A          332 MLEAGLRKAAEKHGI---PHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVH  408 (429)
T ss_dssp             HHHHHHHHHHHHTTC---CCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCCCTTC
T ss_pred             HHHHHHHHHHhhCCC---CEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCCEEEECCC
Confidence            666666553    32   2333444555544311             1   1334444456899999975    777654


Q ss_pred             CCCCChhHHHHHHHHHHHhh
Q 015435          387 LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~~~  406 (407)
                       +++++++++++|+++++++
T Consensus       409 -t~e~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          409 -SDADIEATIAAAEIAMSKL  427 (429)
T ss_dssp             -CHHHHHHHHHHHHHHHHTC
T ss_pred             -CHHHHHHHHHHHHHHHHHH
Confidence             8999999999999998765

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.96  E-value=2.5e-29  Score=235.29  Aligned_cols=319  Identities=13%  Similarity=0.112  Sum_probs=205.4

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCccc
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTG  111 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~  111 (407)
                      ++|||+.+..      +.|.+.+.+++....  . ....|.+..+..++++++++++ +.       +++++  ++||++
T Consensus         4 ~~i~~~~~~~------~~p~~~~~~a~~~~~--~-~~~~y~~~~~~~~l~~~la~~~-g~-------~~~~~--~~~gt~   64 (347)
T 1jg8_A            4 MMIDLRSDTV------TKPTEEMRKAMAQAE--V-GDDVYGEDPTINELERLAAETF-GK-------EAALF--VPSGTM   64 (347)
T ss_dssp             -CEECSCGGG------CCCCHHHHHHHHTCC--C-CCGGGTCCHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHH
T ss_pred             eEEEeccccC------CCCCHHHHHHHhcCC--C-CCcccCCChHHHHHHHHHHHHh-CC-------ceEEE--ecCcHH
Confidence            5789997763      334444444443322  1 1235777788999999999998 53       46788  889999


Q ss_pred             HHHHHHHHHHhhcCCCeEEecCCCCCChH---HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC----CCCcEEEEe
Q 015435          112 SLRVGAEFLARHYHQLTIYIPQPTWGNHP---KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA----PSGAIVLLH  184 (407)
Q Consensus       112 a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~----~~~~~v~i~  184 (407)
                      ++.+++  ...+.+||+|++++|+|....   ..+...|++++.+ .  +.++.+|++++++++++.    ++++++++ 
T Consensus        65 a~~~~~--~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~--~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~-  138 (347)
T 1jg8_A           65 GNQVSI--MAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-P--GKNGAMDPDDVRKAIRPRNIHFPRTSLIAI-  138 (347)
T ss_dssp             HHHHHH--HHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-C--EETTEECHHHHHHHSCCSCTTSCCEEEEEE-
T ss_pred             HHHHHH--HHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-c--CCCCccCHHHHHHHhccccccccCceEEEE-
Confidence            988774  444779999999999986432   2567789999888 4  234568999999998731    13556665 


Q ss_pred             cCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeeccccccc--cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435          185 ACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGF--ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER  261 (407)
Q Consensus       185 ~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  261 (407)
                      ++||||| |.+++.+++++|+++|++||+++|+|++|..+  .+.+.  +   ...+....+  .++.|+||.++++   
T Consensus       139 ~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~--~---~~~~~~~~d--~~~~s~sK~l~~~---  208 (347)
T 1jg8_A          139 ENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV--P---VKEYAGYAD--SVMFCLSKGLCAP---  208 (347)
T ss_dssp             ESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC--C---HHHHHHTCS--EEEEESSSTTCCS---
T ss_pred             eccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC--C---hHHhccccc--EEEEecccccCCC---
Confidence            9999999 99999999999999999999999999986421  11111  1   112222233  3345899998743   


Q ss_pred             cceeEEeecChhhHHHHHHHHhhhhhcccCC--CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435          262 VGALSIVCKTEDVASRVESQLKLVIRPMYSS--PPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR  339 (407)
Q Consensus       262 ~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  339 (407)
                      +|++  ++.++++.+++..    .......+  .+...+.++...++..         .+.+ ++..++++++.+.|++.
T Consensus       209 ~G~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~-~~~~~~~~~l~~~L~~~  272 (347)
T 1jg8_A          209 VGSV--VVGDRDFIERARK----ARKMLGGGMRQAGVLAAAGIIALTKM---------VDRL-KEDHENARFLALKLKEI  272 (347)
T ss_dssp             SCEE--EEECHHHHHHHHH----HHHHHTCCCSSTHHHHHHHHHHHHHS---------STTH-HHHHHHHHHHHHHHHHH
T ss_pred             ceEE--EEcCHHHHHHHHH----HHHHcCCchhHHHHHHHHHHHHHHHH---------HHHH-HHHHHHHHHHHHHHHhc
Confidence            6864  3555554444322    22222222  2333334444344321         1111 12234567778888776


Q ss_pred             CCCCCccc--ccCCceeEEecCC-----CHHHHHHhHhhccEEEcCCC----eEEec-CCCCCChhHHHHHHHHHHHhh
Q 015435          340 GTPGDWSH--IIKQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSDG----RISMA-GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       340 ~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +    +.+  ..+.++ +.|+.+     +.+.+.+.|.++||.+.+++    ||++. ..+++++++++++|+++++++
T Consensus       273 ~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~  346 (347)
T 1jg8_A          273 G----YSVNPEDVKTN-MVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  346 (347)
T ss_dssp             T----CBCCGGGCCSS-EEEEECTTSSSCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             C----ceeccCCCcce-EEEEEcccccCCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence            5    332  233444 455533     35555554556899998864    88874 357899999999999998764

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.96  E-value=2.4e-29  Score=239.62  Aligned_cols=337  Identities=15%  Similarity=0.135  Sum_probs=220.7

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      .+..++||+.|.+..+.| +.++.+.+++.+.+.........| +.....++++.+++++ +.     +++++++  |+|
T Consensus        43 ~g~~~ld~~~~~~~~~~g-~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-~~-----~~~~v~~--~~g  112 (395)
T 1vef_A           43 EGNEYIDCVGGYGVANLG-HGNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAIL-PP-----ELNRVFP--VNS  112 (395)
T ss_dssp             TSCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTS-CT-----TEEEEEE--ESS
T ss_pred             CCCEEEEccCccccccCC-CCCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhc-CC-----CcCEEEE--cCc
Confidence            457899999986533455 456666666666664111111123 4455677888888876 32     3478999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCCh-HHHHhhcCceeeE---EEeecCC--CCCcChhhHHHHHHcCCCCcEEE
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNH-PKVFTLAGLSVKT---YRYYDPA--TRGLNFQGLLEDLRAAPSGAIVL  182 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~-~~~~~~~G~~~~~---v~~~~~~--~~~~d~~~l~~~i~~~~~~~~v~  182 (407)
                      |++++.++++.+..+.+||.|++++|+|+.. ...+...|.+.+.   +|+..+.  -...|++++++.+.  +++++++
T Consensus       113 g~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~--~~~~~v~  190 (395)
T 1vef_A          113 GTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVD--EETAAVI  190 (395)
T ss_dssp             HHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCC--TTEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhc--cCEEEEE
Confidence            9999999965443235889999999999764 4466666765321   1110000  00148999999887  4556655


Q ss_pred             EecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435          183 LHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER  261 (407)
Q Consensus       183 i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  261 (407)
                      + ++++||||.+ .+.+++++|+++|++||++||+||+|.++...+.   ..++... ....+++   ||||.++. |+|
T Consensus       191 ~-~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~---~~~~~~~-~~~~d~~---s~sK~~~~-g~~  261 (395)
T 1vef_A          191 L-EPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK---RFAFEHF-GIVPDIL---TLAKALGG-GVP  261 (395)
T ss_dssp             E-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCCSEE---EECGGGGT-TSS
T ss_pred             E-eCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc---hhHhhhc-CCCCCEE---EEcccccC-CCc
Confidence            5 6668899986 4788899999999999999999999997765432   1112222 2122333   88999995 999


Q ss_pred             cceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015435          262 VGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT  341 (407)
Q Consensus       262 ~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  341 (407)
                      +||+  +++     +++.+.+.......+.+++.+.+.++..+++...      +  +..+++++++++++.+.|++.+.
T Consensus       262 ~G~~--~~~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~------~--~~~~~~~~~~~~~l~~~l~~~~~  326 (395)
T 1vef_A          262 LGVA--VMR-----EEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE------R--TRLWERAAELGPWFMEKLRAIPS  326 (395)
T ss_dssp             CEEE--EEE-----HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH------H--HTTHHHHHHHHHHHHHHHHTSCC
T ss_pred             eEEE--Eeh-----HHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHH------h--CCHHHHHHHHHHHHHHHHHHhhc
Confidence            9999  566     3355545432223344677788887777765331      1  34667888899999999988763


Q ss_pred             CCCcccccCCceeEEecCC---CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHHHHH
Q 015435          342 PGDWSHIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      +. +....+ .+.+.|+.+   ..+....+++++||.+.+++    ||+++. .+++++++++++|++++
T Consensus       327 ~~-~~~~~~-~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          327 PK-IREVRG-MGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             TT-EEEEEE-ETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             Cc-eEEEEE-EEEEEEEEEcChHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            10 111223 344555544   33445555537899999875    887652 47899999999999876

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.96  E-value=5.1e-29  Score=237.18  Aligned_cols=296  Identities=16%  Similarity=0.137  Sum_probs=204.6

Q ss_pred             cCCCCCCcHHHHHHHHHHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhc
Q 015435           70 EYLPIVGLVDFNKLSAKLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLA  146 (407)
Q Consensus        70 ~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~  146 (407)
                      .|++.  ..++++++++++....+  .+++ ++++  |+|+++++.+++..  .+.+||+|++++|+|.+  +...++..
T Consensus        60 ~~~~~--~~~~~~~~~~~la~~~g--~~~~~~v~~--t~g~t~al~~~~~~--~~~~gd~Vl~~~~~~~~~~~~~~~~~~  131 (393)
T 1vjo_A           60 HLDPA--FLALMDEIQSLLRYVWQ--TENPLTIAV--SGTGTAAMEATIAN--AVEPGDVVLIGVAGYFGNRLVDMAGRY  131 (393)
T ss_dssp             TTSHH--HHHHHHHHHHHHHHHHT--CCCSCEEEE--SSCHHHHHHHHHHH--HCCTTCEEEEEESSHHHHHHHHHHHHT
T ss_pred             ccCHH--HHHHHHHHHHHHHHHhC--CCCCcEEEE--eCchHHHHHHHHHh--ccCCCCEEEEEcCChhHHHHHHHHHHc
Confidence            46432  33455555544422112  1346 8999  99999999999533  37799999999999998  88888999


Q ss_pred             CceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435          147 GLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASG  226 (407)
Q Consensus       147 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~  226 (407)
                      |.+++.++.+  .++.+|++++++.+.+. +++++++ ++|+||||.+.+   +++|+++|+++|+++|+|++|. +...
T Consensus       132 g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~-~g~~  203 (393)
T 1vjo_A          132 GADVRTISKP--WGEVFSLEELRTALETH-RPAILAL-VHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS-LGGV  203 (393)
T ss_dssp             TCEEEEEECC--TTCCCCHHHHHHHHHHH-CCSEEEE-ESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT-TTTS
T ss_pred             CCceEEEecC--CCCCCCHHHHHHHHhhC-CceEEEE-eccCCCcceecc---HHHHHHHHHHcCCEEEEECCcc-ccCc
Confidence            9999999983  35679999999999831 5677766 899999999886   7888888999999999999998 3321


Q ss_pred             CCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHH---Hhhh------------hhcccC
Q 015435          227 SLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQ---LKLV------------IRPMYS  291 (407)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~---~~~~------------~~~~~~  291 (407)
                      +.  +      + ...+..+++.|+||.++.+| |+||+  +++ +++.+.+...   +...            ......
T Consensus       204 ~~--~------~-~~~~~di~~~s~sK~l~~~~-~~G~l--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (393)
T 1vjo_A          204 PI--F------L-DAWGVDLAYSCSQKGLGCSP-GASPF--TMS-SRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYH  270 (393)
T ss_dssp             CC--C------T-TTTTCSEEECCSSSTTCSCS-SCEEE--EEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCC
T ss_pred             CC--c------c-cccCccEEEEcCcccccCCC-ceEEE--EEC-HHHHHHHhccCCCCCceecCcHhhhhhhccCCCCC
Confidence            11  1      1 12345788999999998787 99999  565 3333332210   0000            001122


Q ss_pred             -CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCc---eeEEec----CCCHH
Q 015435          292 -SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQI---GMFTFT----GLNSE  363 (407)
Q Consensus       292 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~----~~~~~  363 (407)
                       +++.+.+.++..+++...     ...+++.+++++++++++.+.|++.+    +.+..+.+   +.+.++    +.+.+
T Consensus       271 g~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (393)
T 1vjo_A          271 HTAPINLYYALREALRLIA-----QEGLANCWQRHQKNVEYLWERLEDIG----LSLHVEKEYRLPTLTTVCIPDGVDGK  341 (393)
T ss_dssp             SCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSCGGGBCSSEEEEECCTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHHHHHHcC----CcccCCccccCCcEEEEEcCCCCCHH
Confidence             667778888777775321     12367888999999999999999876    55555543   123332    34555


Q ss_pred             HHH-HhHhhccEEEcCCC--------eEEe-cC-CCCCChhHHHHHHHHHH
Q 015435          364 QVA-FMTKEYHIYMTSDG--------RISM-AG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       364 ~~~-~~l~~~gi~~~~gg--------Ris~-~~-~~~e~i~~~~~~l~~~l  403 (407)
                      .+. .+++++||.+.+|.        ||++ +. .+++++++++++|++++
T Consensus       342 ~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          342 AVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             HHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence            554 45454599998752        9994 32 24557999999999876

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.96  E-value=1.6e-28  Score=234.02  Aligned_cols=331  Identities=14%  Similarity=0.068  Sum_probs=214.0

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ..+++++||+.|.+..+.| ..++.+++++.+++.  . ..+.|  .+.....++++.+++++ +       .+++++  
T Consensus        33 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~--~-~~~~~~~~~~~~~~~l~~~la~~~-~-------~~~v~~--   98 (395)
T 3nx3_A           33 DKAKKYLDFSSGIGVCALG-YNHAKFNAKIKAQVD--K-LLHTSNLYYNENIAAAAKNLAKAS-A-------LERVFF--   98 (395)
T ss_dssp             TTCCEEEESSHHHHTCTTC-BSCHHHHHHHHHHHT--T-CSCCCTTSBCHHHHHHHHHHHHHH-T-------CSEEEE--
T ss_pred             CCCCEEEECCCcHHhccCC-CCCHHHHHHHHHHHH--h-ccccccccCCHHHHHHHHHHHHhc-C-------CCeEEE--
Confidence            3568999999997655566 556777777777775  2 12212  12334556666666665 3       278999  


Q ss_pred             cCCcccHHHHHHHHHHhh-----cCCCeEEecCCCCCChHHHHhhcC-------------ceeeEEEeecCCCCCcChhh
Q 015435          106 CLSGTGSLRVGAEFLARH-----YHQLTIYIPQPTWGNHPKVFTLAG-------------LSVKTYRYYDPATRGLNFQG  167 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~-----~~gd~Vi~~~p~y~~~~~~~~~~G-------------~~~~~v~~~~~~~~~~d~~~  167 (407)
                      |+||+++++.+++++...     .++|.|++++|+|+++.......+             .++..++.       .|+++
T Consensus        99 ~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~  171 (395)
T 3nx3_A           99 TNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISS  171 (395)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHH
T ss_pred             eCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHH
Confidence            999999999997665444     467999999999988765444332             23333432       27889


Q ss_pred             HHHHHHcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          168 LLEDLRAAPSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       168 l~~~i~~~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      +++++.  ++++++++ .+++|++|.+ ++++++++|+++|++||++||+||+|.+|+..+.   .....    ..+...
T Consensus       172 l~~~l~--~~~~~v~~-~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~~~~----~~~~~~  241 (395)
T 3nx3_A          172 VEKLVN--EKTCAIIL-ESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK---FFAYE----HAQILP  241 (395)
T ss_dssp             HHTTCC--TTEEEEEE-ESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGG----GGTCCC
T ss_pred             HHHhcc--CCeEEEEE-eCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc---chhHH----hcCCCC
Confidence            998886  45667666 4456666665 7899999999999999999999999998876532   11111    111122


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHH-HHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRV-ESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                      -+.++||.++ .|+|+||+  +++     +.+ .+.+.......+++.+.+++.++.++++.... +   +..++.++..
T Consensus       242 d~~t~sK~~~-~G~~~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~---~~~~~~~~~~  309 (395)
T 3nx3_A          242 DIMTSAKALG-CGLSVGAF--VIN-----QKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-E---KILENVNKLT  309 (395)
T ss_dssp             SEEEECGGGT-TTSCCEEE--EEC-----HHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-T---THHHHHHHHH
T ss_pred             CEEEeccccc-CCCceEEE--EEc-----hhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-h---HHHHHHHHHH
Confidence            2447899998 49999999  566     444 55554443334557788888888887763210 0   1223333333


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHH
Q 015435          326 ISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLT  396 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~  396 (407)
                      +..++.+.+.+...+.   +....+.+. +.++.+    +.+.+...|.++||.+.+++    ||+++. .+++++++++
T Consensus       310 ~~~~~~l~~~~~~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l  385 (395)
T 3nx3_A          310 PYLEQSLDELINEFDF---CKKRKGLGF-MQGLSLDKSVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMS  385 (395)
T ss_dssp             HHHHHHHHHHHHHCTT---EEEEEEETT-EEEEEECTTSCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC---eEEEEeEEE-EEEEEeCCcchHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHH
Confidence            3333344443333331   333344444 443322    44555555566899999875    887543 4789999999


Q ss_pred             HHHHHHHHh
Q 015435          397 DAIHAAVTR  405 (407)
Q Consensus       397 ~~l~~~l~~  405 (407)
                      ++|++++++
T Consensus       386 ~~l~~~l~~  394 (395)
T 3nx3_A          386 EKLRKALKS  394 (395)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999999875

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.96  E-value=1.9e-28  Score=235.90  Aligned_cols=331  Identities=13%  Similarity=0.032  Sum_probs=210.4

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++++|||+.|.+..+.| +.++.+++++.+++.  ......| +.....++++.+++++ +      ..+++++  |+
T Consensus        49 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~--~~~~~~~-~~~~~~~la~~l~~~~-~------~~~~v~~--~~  115 (427)
T 3fq8_A           49 VDGNRYIDYVGTWGPAICG-HAHPEVIEALKVAME--KGTSFGA-PCALENVLAEMVNDAV-P------SIEMVRF--VN  115 (427)
T ss_dssp             TTSCEEEESSGGGTTCTTC-BTCHHHHHHHHHHHT--TCSCCSS-CCHHHHHHHHHHHHHS-T------TCSEEEE--ES
T ss_pred             CCCCEEEECCCchhhhccC-CCCHHHHHHHHHHHH--hCCCcCC-CCHHHHHHHHHHHHhC-C------CCCEEEE--eC
Confidence            4568999999998755667 567778888877775  2222223 3333445555555554 2      2489999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-Cce-------------------eeEEEeecCCCCCcChhh
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-GLS-------------------VKTYRYYDPATRGLNFQG  167 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G~~-------------------~~~v~~~~~~~~~~d~~~  167 (407)
                      ||+++++.++++......++.|++.+|+|+++....... |..                   +..++.       -|+++
T Consensus       116 ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~  188 (427)
T 3fq8_A          116 SGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEA  188 (427)
T ss_dssp             SHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-------TCHHH
T ss_pred             CHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-------CCHHH
Confidence            999999999766555556689999999998765544322 211                   222221       18999


Q ss_pred             HHHHHHcCCCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          168 LLEDLRAAPSGAIVLLHACAHNPTGVDPT-LEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       168 l~~~i~~~~~~~~v~i~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      +++.+.+.+++..++++++++|++|.+.+ .+.+++|+++|++||++||+||+|.+| ..+   .......+ ....+  
T Consensus       189 le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~~~~-~~~~d--  261 (427)
T 3fq8_A          189 VKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIA---YGGVQEKF-GVTPD--  261 (427)
T ss_dssp             HHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTB---TTHHHHHT-TCCCS--
T ss_pred             HHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchhhHhc-CCCCC--
Confidence            99999854434444453666777777654 666999999999999999999999988 543   12222222 11112  


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh---hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                       +.|+||.++ +|+|+||+  +++     +++.+.+...   ....+++++++++.++.++++...      +  +...+
T Consensus       262 -i~t~sK~~~-~G~~~G~~--~~~-----~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~------~--~~~~~  324 (427)
T 3fq8_A          262 -LTTLGKIIG-GGLPVGAY--GGK-----REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLR------Q--PGTYE  324 (427)
T ss_dssp             -EEEECGGGG-TTSSCEEE--EEC-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT------S--TTHHH
T ss_pred             -hhhhhhhhh-CCcceEEE--EEc-----HHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHH------h--cCHHH
Confidence             458899999 79999999  565     4455545432   122334668888888887775221      0  12334


Q ss_pred             HHHHHHHHHHHHHHh----cCCCCCcccccCCceeEEecCC-----C------------HHHHHHhHhhccEEEcCCC--
Q 015435          324 RIISMRQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGL-----N------------SEQVAFMTKEYHIYMTSDG--  380 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~-----~------------~~~~~~~l~~~gi~~~~gg--  380 (407)
                      +++++++++.+.|++    .+    +....+..|.+.++.+     .            ...+...|.++||.+.+++  
T Consensus       325 ~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~  400 (427)
T 3fq8_A          325 YLDQITKRLSDGLLAIAQETG----HAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE  400 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT----CCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhCC----CCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCCC
Confidence            444444455444443    33    2212222333443322     1            2234444555899999987  


Q ss_pred             eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |+++.. .+++++++++++|+++++++
T Consensus       401 r~~~~~~~t~e~i~~~l~~l~~~l~~~  427 (427)
T 3fq8_A          401 AGFTSLAHTEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             CEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CEEeeCcCCHHHHHHHHHHHHHHHHhC
Confidence            776654 47899999999999998763

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.96  E-value=1.3e-28  Score=231.67  Aligned_cols=291  Identities=16%  Similarity=0.090  Sum_probs=205.5

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecC-CCCCC-hHHHHhhcCceeeE
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQ-PTWGN-HPKVFTLAGLSVKT  152 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~-p~y~~-~~~~~~~~G~~~~~  152 (407)
                      .+..++++.+++++ +.   +.+++++++  |+|+++++.+++  ...+.+||+|++++ ++|.. +...+...|.+++.
T Consensus        37 ~~~~~l~~~la~~~-g~---~~~~~~v~~--~~g~t~a~~~~~--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~  108 (366)
T 1m32_A           37 GVVEQIRQQLTALA-TA---SEGYTSVLL--QGSGSYAVEAVL--GSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHA  108 (366)
T ss_dssp             TTHHHHHHHHHHHH-CS---SSSEEEEEE--ESCHHHHHHHHH--HHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHHHHh-CC---CCcCcEEEE--ecChHHHHHHHH--HHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEE
Confidence            67899999999998 42   112357999  999999999995  33367899988776 55553 56677888999999


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      ++..  ..+.+|++++++.+.+.++++++++ ++|+||||.+++   +++|+++|++||+++|+|++|...... .  + 
T Consensus       109 v~~~--~~~~~d~~~l~~~l~~~~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~--~-  178 (366)
T 1m32_A          109 YDCG--EVARPDVQAIDAILNADPTISHIAM-VHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGIP-M--D-  178 (366)
T ss_dssp             EECC--TTSCCCHHHHHHHHHHCTTCCEEEE-ESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C--C-
T ss_pred             EeCC--CCCCCCHHHHHHHHhcCCCeEEEEE-ecccCCcceecC---HHHHHHHHHHcCCEEEEECCccccCcC-c--c-
Confidence            9983  3466999999999985434566666 889999999987   778888999999999999998744321 1  1 


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh------------------hcccCCCC
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI------------------RPMYSSPP  294 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~------------------~~~~~~~~  294 (407)
                        +    ...+..++++|+||.++ .+.++||+  +++     +.+.+.+....                  .....+++
T Consensus       179 --~----~~~~~di~~~s~~K~~~-~~~g~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (366)
T 1m32_A          179 --I----AALHIDYLISSANKCIQ-GVPGFAFV--IAR-----EQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSP  244 (366)
T ss_dssp             --T----TTTTCSEEEEESSSTTC-CCSSEEEE--EEE-----HHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCC
T ss_pred             --c----cccCccEEEecCccccc-CCCceEEE--EEC-----HHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCC
Confidence              1    11235688999999774 23456998  566     33433332210                  00123566


Q ss_pred             hhHHHHHHHHhcChhhHHhHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC---CceeEEecC------CCHH
Q 015435          295 IHGASIVATILKDSTMYKEWTLE--LKAMADRIISMRQQLFDALSARGTPGDWSHIIK---QIGMFTFTG------LNSE  363 (407)
Q Consensus       295 ~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~------~~~~  363 (407)
                      ..++.++..+++..      .+.  +++.+++++++++++.+.|++.+    +.+..+   .++++.|+.      .+.+
T Consensus       245 ~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (366)
T 1m32_A          245 THTVLAFAQALKEL------AKEGGVAARHQRYQQNQRSLVAGMRALG----FNTLLDDELHSPIITAFYSPEDPQYRFS  314 (366)
T ss_dssp             HHHHHHHHHHHHHH------HHHTHHHHHHHHHHHHHHHHHHHHHHTT----CCBSSCGGGBCSSEEEEECCCCTTCCHH
T ss_pred             HHHHHHHHHHHHHH------HHccCHhHHHHHHHHHHHHHHHHHHHCC----CeeccCchhcCceEEEEEcCccCCCCHH
Confidence            66666666666532      132  56788889999999999999875    444433   356555553      3455


Q ss_pred             HHHHhHhhccEEEcCCC-------eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          364 QVAFMTKEYHIYMTSDG-------RISMAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       364 ~~~~~l~~~gi~~~~gg-------Ris~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      .+.+.|.++||.+.++.       ||+++. .+++++++++++|+++++++|
T Consensus       315 ~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  366 (366)
T 1m32_A          315 EFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYWTK  366 (366)
T ss_dssp             HHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC-
T ss_pred             HHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhcC
Confidence            55555556799998762       999875 367999999999999887664

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.96  E-value=1.3e-28  Score=234.30  Aligned_cols=318  Identities=11%  Similarity=0.077  Sum_probs=210.8

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCCCcHH----HHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVD----FNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH  123 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~----l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~  123 (407)
                      +.++.+++++.+.+.  . ....+....+..+    +++.+++++ +     .++++|++  |+|+++++.+++..+...
T Consensus        41 ~~~~~v~~a~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~la~~~-~-----~~~~~i~~--~~ggt~a~~~~~~~~~~~  109 (397)
T 3f9t_A           41 NVLPITRKIVDIFLE--T-NLGDPGLFKGTKLLEEKAVALLGSLL-N-----NKDAYGHI--VSGGTEANLMALRCIKNI  109 (397)
T ss_dssp             CCCTHHHHHHHHHTT--C-CTTSGGGBHHHHHHHHHHHHHHHHHT-T-----CTTCEEEE--ESCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHh--h-cCCCcccChhHHHHHHHHHHHHHHHh-C-----CCCCCEEE--ecCcHHHHHHHHHHHHHH
Confidence            345566666655554  1 1111211123344    445555544 3     23578999  999999999996554322


Q ss_pred             -----------cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCC
Q 015435          124 -----------YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTG  192 (407)
Q Consensus       124 -----------~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG  192 (407)
                                 .+||+|+++.|+|..+...++..|.+++.+|.+  .++.+|++++++.+.+. +++++++ ++|+||||
T Consensus       110 ~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~nptG  185 (397)
T 3f9t_A          110 WREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIK--EDYTIDEKFVKDAVEDY-DVDGIIG-IAGTTELG  185 (397)
T ss_dssp             HHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBC--TTSSBCHHHHHHHHHHS-CCCEEEE-EBSCTTTC
T ss_pred             HHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeC--CCCcCCHHHHHHHHhhc-CCeEEEE-ECCCCCCC
Confidence                       139999999999999999999999999999983  35779999999999832 5677776 78999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHH----HH-HHcCCcEEEEEecCccccccCCCcceeEE
Q 015435          193 VDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR----MF-VADGGECLVAQSYAKNMGLYGERVGALSI  267 (407)
Q Consensus       193 ~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~----~~-~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  267 (407)
                      .+.+   +++|+++|++||+++|+|++|..+...... ......    .+ ... +..+++.|++|.++ +|.|+|++  
T Consensus       186 ~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~--  257 (397)
T 3f9t_A          186 TIDN---IEELSKIAKENNIYIHVDAAFGGLVIPFLD-DKYKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGI--  257 (397)
T ss_dssp             CBCC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCC-GGGCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEE--
T ss_pred             CCCC---HHHHHHHHHHhCCeEEEEccccchhhhhcc-cccccccccccccccc-cCCeEEEccccccC-CCCCceEE--
Confidence            9875   788888999999999999999876542110 000000    00 112 45688899999775 67899998  


Q ss_pred             eecChhhHHHHHHHHhhhhhccc--------CC---CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          268 VCKTEDVASRVESQLKLVIRPMY--------SS---PPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL  336 (407)
Q Consensus       268 v~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  336 (407)
                      +++++.+.+.    +........        .+   .+..++.++...+..        ...++..++++++++++.+.|
T Consensus       258 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~l~~~L  325 (397)
T 3f9t_A          258 LFKDIGYKRY----LDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGR--------EGQRKIVNECMENTLYLYKKL  325 (397)
T ss_dssp             EESSGGGGGG----TCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCHHHHHh----hccCCccccCCCccccccccccchHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHH
Confidence            6776553332    211111100        11   133444444444421        345677788889999999999


Q ss_pred             HhcCCCCCcccc-cCCceeEEecCCCHHHHHHhHhhccEEEcCCC-----eEEecC-CCCCChhHHHHHHHHHHH
Q 015435          337 SARGTPGDWSHI-IKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDG-----RISMAG-LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       337 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~gg-----Ris~~~-~~~e~i~~~~~~l~~~l~  404 (407)
                      ++.+    +... .+.++++.+...+.+.+.+.|.++||.+.++.     ||+++. .+++++++++++|+++++
T Consensus       326 ~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          326 KENN----FKPVIEPILNIVAIEDEDYKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             HHTT----CCBSSCCSSSEEEEECTTHHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             HHCC----CEEEcCCCccEEEEEeCCHHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            9886    5533 44555544433345555555566799998874     999874 478999999999998865

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.96  E-value=3.5e-28  Score=236.04  Aligned_cols=352  Identities=12%  Similarity=-0.004  Sum_probs=214.2

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++++|||+.|.+..+.| +.++.+++++.+++.  .. ...|....+..+.++++++++....+  ...++|++  |+
T Consensus        47 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~A~~~~~~--~~-~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~  118 (459)
T 4a6r_A           47 SEGNKIIDGMAGLWCVNVG-YGRKDFAEAARRQME--EL-PFYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFY--TN  118 (459)
T ss_dssp             TTCCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHH--HC-SCCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEE--ES
T ss_pred             CCCCEEEECCCchhcccCC-CCCHHHHHHHHHHHH--hc-cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eC
Confidence            4568999999997766677 567788888888875  21 21233333334455555555522211  23478999  99


Q ss_pred             CcccHHHHHHHHHHhh------cCCCeEEecCCCCCChHHHHhhcCc-------------eeeEEEeec--C-CCCCcC-
Q 015435          108 SGTGSLRVGAEFLARH------YHQLTIYIPQPTWGNHPKVFTLAGL-------------SVKTYRYYD--P-ATRGLN-  164 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~------~~gd~Vi~~~p~y~~~~~~~~~~G~-------------~~~~v~~~~--~-~~~~~d-  164 (407)
                      ||++|++.+++++...      .+++.|++.+|+|+++.......+.             .+..++...  . ..+ .| 
T Consensus       119 ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~  197 (459)
T 4a6r_A          119 SGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTP  197 (459)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCH
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCH
Confidence            9999999997666433      2578999999999988765544322             223333210  0 111 34 


Q ss_pred             -------hhhHHHHHHcC-CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH
Q 015435          165 -------FQGLLEDLRAA-PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV  235 (407)
Q Consensus       165 -------~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~  235 (407)
                             ++++++.+.+. +.+..++++.+.+|++|. +++++++++|+++|++||++||+||+|.+|+..+.   ....
T Consensus       198 ~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~---~~~~  274 (459)
T 4a6r_A          198 DEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE---WFGH  274 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc---cchH
Confidence                   78888888632 233344442444445555 46999999999999999999999999999877642   2222


Q ss_pred             HHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHH
Q 015435          236 RMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWT  315 (407)
Q Consensus       236 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  315 (407)
                      ..+ ....++   .+|||.++.+|+|+|++  +++ +++.+.+... .......+++.+++++.++.++|+...-    .
T Consensus       275 ~~~-~~~pdi---~t~sK~l~gg~~~lg~v--~~~-~~i~~~~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~----~  342 (459)
T 4a6r_A          275 QHF-GFQPDL---FTAAKGLSSGYLPIGAV--FVG-KRVAEGLIAG-GDFNHGFTYSGHPVCAAVAHANVAALRD----E  342 (459)
T ss_dssp             HHH-TCCCSE---EEECGGGGTTSSCCEEE--EEC-HHHHHHHHHH-CTTHHHHHHCSCHHHHHHHHHHHHHHHH----T
T ss_pred             hhc-CCCCCe---eehhhhhcCCCCCccce--eeC-HHHHHHhhcC-CCcccCCCCCCCHHHHHHHHHHHHHHhc----c
Confidence            222 222233   35899998555999999  464 5444443321 1223334557888999998888863310    0


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec--CC-C-----------HHHHHHhHhhccEEEcCCC
Q 015435          316 LELKAMA-DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT--GL-N-----------SEQVAFMTKEYHIYMTSDG  380 (407)
Q Consensus       316 ~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~-----------~~~~~~~l~~~gi~~~~gg  380 (407)
                      +..++.+ +.....++.+.+.|...+.   +....+.|.++.+.  .- .           ...+...+.++||.+.++|
T Consensus       343 ~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g  419 (459)
T 4a6r_A          343 GIVQRVKDDIGPYMQKRWRETFSRFEH---VDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG  419 (459)
T ss_dssp             CHHHHHHHTHHHHHHHHHHHHHTTCTT---EEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCC---eEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC
Confidence            1223333 3333333344344433332   44455555554432  10 0           3334444455799999976


Q ss_pred             ---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 ---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 ---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                         ||++.. .+++++++++++|+++++++
T Consensus       420 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  449 (459)
T 4a6r_A          420 DHIVSAPPLVMTRAEVDEMLAVAERCLEEF  449 (459)
T ss_dssp             TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence               777432 48899999999999998653

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.96  E-value=1.3e-28  Score=238.50  Aligned_cols=337  Identities=11%  Similarity=0.058  Sum_probs=212.9

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCC----cHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVG----LVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g----~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      ..++++|||+.|.+..+.| +.++.+++++.+++.  ..  ..|....+    ..++++.+++.+ +..    ..+++++
T Consensus        61 ~~G~~ylD~~~~~~~~~lG-h~~p~v~~A~~~~~~--~~--~~~~~~~~~~~~~~~la~~l~~~~-~~~----~~~~v~~  130 (453)
T 4ffc_A           61 ADGNSFIDLGAGIAVTTVG-ASHPAVAAAIADQAT--HF--THTCFMVTPYEQYVQVAELLNALT-PGD----HDKRTAL  130 (453)
T ss_dssp             TTSCEEEESSHHHHTCTTC-TTCHHHHHHHHHHHH--HC--SCCTTTTSCCHHHHHHHHHHHHHS-SCS----SCEEEEE
T ss_pred             CCCCEEEEcCCCcccCcCC-CCCHHHHHHHHHHHH--hc--cccccCcCCCHHHHHHHHHHHHhC-CCC----CCcEEEE
Confidence            3568899999997655667 567788888888875  21  22333233    344555555544 211    1378999


Q ss_pred             eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc--------------eeeEEEeecC--CCCCcC---
Q 015435          104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL--------------SVKTYRYYDP--ATRGLN---  164 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~--------------~~~~v~~~~~--~~~~~d---  164 (407)
                        |+||++|++.++++......++.|++.+++|+++.......+.              .+..++...+  +.++.+   
T Consensus       131 --~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  208 (453)
T 4ffc_A          131 --FNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEE  208 (453)
T ss_dssp             --ESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHH
T ss_pred             --eCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHH
Confidence              9999999999976654444668999999999987665543322              3445554211  112333   


Q ss_pred             -----hhhHHHHHHcCCCCcEEEEecCCCCCCC--CCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435          165 -----FQGLLEDLRAAPSGAIVLLHACAHNPTG--VDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM  237 (407)
Q Consensus       165 -----~~~l~~~i~~~~~~~~v~i~~~p~NPtG--~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~  237 (407)
                           ++.+++.+.  +.+.++++ +.|.||+|  ...+.+.+++|+++|++||++||+||+|.+|+..+.   ......
T Consensus       209 ~~~~~~~~l~~~i~--~~~~aavi-~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~a~~~  282 (453)
T 4ffc_A          209 AARRAISRIETQIG--AQSLAAII-IEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA---WFASEH  282 (453)
T ss_dssp             HHHHHHHHHHHHTC--GGGEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHH
T ss_pred             HHHHHHHHHHHhcC--CCCEEEEE-EcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc---cchhhh
Confidence                 234444432  33445555 67788876  345788899999999999999999999999876542   122222


Q ss_pred             HHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHH
Q 015435          238 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLE  317 (407)
Q Consensus       238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  317 (407)
                      + ..   ..-+.+|||.++. |+|+||+  +++     +++.+.+.......+++.+++++.++.++++...      + 
T Consensus       283 ~-~~---~pdi~t~sK~~~~-G~~~G~~--~~~-----~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~-  343 (453)
T 4ffc_A          283 E-GI---VPDIVTMAKGIAG-GMPLSAV--TGR-----AELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMR------E-  343 (453)
T ss_dssp             H-TC---CCSEEEECGGGGT-TSSCEEE--EEE-----HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHH------H-
T ss_pred             c-CC---CcchHhhhhhhcC-CcCeEEE--EEC-----HHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhh------h-
Confidence            2 11   1124468999985 9999999  566     5566656555455566888999998888876331      1 


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----hcCCCCCcccccCCceeEEecCC--------C---HHHHHHhHhhccEEEcCCC--
Q 015435          318 LKAMADRIISMRQQLFDALS----ARGTPGDWSHIIKQIGMFTFTGL--------N---SEQVAFMTKEYHIYMTSDG--  380 (407)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~~~~gg--  380 (407)
                       +...++++++.+++.+.|+    ..+.   +....+.|. |.++.+        +   ...+...+.++||.+.|++  
T Consensus       344 -~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~  418 (453)
T 4ffc_A          344 -LDLPARARAIEASVTSRLSALAEEVDI---IGEVRGRGA-MLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTF  418 (453)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHHHHCSS---EEEEEEETT-EEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTT
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhhCCC---eEEEEeece-EEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCC
Confidence             1233344444444444444    3332   333344444 444322        1   2334445556899998864  


Q ss_pred             ----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 ----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 ----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                          ||+++. .+++++++++++|+++++++
T Consensus       419 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  449 (453)
T 4ffc_A          419 GNVIRLLPPLVIGDDLLDEGITALSDIIRAK  449 (453)
T ss_dssp             SCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                776553 47899999999999998764

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.96  E-value=3e-29  Score=238.39  Aligned_cols=328  Identities=14%  Similarity=0.074  Sum_probs=222.3

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc--ccc---cCCC-CCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS--RVK---EYLP-IVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~y~~-~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ++.++|..+.    .+ +.|+.+.+++.+.+. ...  ...   .|.. ..+..++++.+++++ +.     ++++|++ 
T Consensus        15 ~~~i~l~~~~----~~-~~~~~v~~a~~~~~~-~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~-g~-----~~~~v~~-   81 (390)
T 1elu_A           15 ANKTYFNFGG----QG-ILPTVALEAITAMYG-YLQENGPFSIAANQHIQQLIAQLRQALAETF-NV-----DPNTITI-   81 (390)
T ss_dssp             TTSEECCTTT----CC-CCCHHHHHHHHHHHH-HHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT-TS-----CGGGEEE-
T ss_pred             CCeEEecCCc----cC-CCCHHHHHHHHHHHH-HHhccCCcchhhHHHHHHHHHHHHHHHHHHc-CC-----CHHHEEE-
Confidence            3567777664    24 556567777666664 111  011   3433 367899999999988 42     3468999 


Q ss_pred             ecCCcccHHHHHHHHHHh-hcCCCeEEecCCCCCChHHH----HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCc
Q 015435          105 QCLSGTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKV----FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGA  179 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~  179 (407)
                       |+|+++++.+++  ... +.+||+|+++.|+|..+...    .+..|.+++.++.+.+.++.+|++++++.+.  ++++
T Consensus        82 -~~g~t~a~~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~--~~~~  156 (390)
T 1elu_A           82 -TDNVTTGCDIVL--WGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG--PKTR  156 (390)
T ss_dssp             -ESSHHHHHHHHH--HHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC--TTEE
T ss_pred             -eCChHHHHHHHH--hCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC--CCce
Confidence             999999999994  333 57899999999999987654    4567999999988422467899999999886  4566


Q ss_pred             EEEEecCCCCCCCCCCCHHHHHHHHHHHH----HcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          180 IVLLHACAHNPTGVDPTLEQWEQIRQLMR----SKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       180 ~v~i~~~p~NPtG~~~~~~~l~~i~~~~~----~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      ++++ ++|+||||.+++   +++|+++|+    +||+++|+|++|..... +.  +      + ......+++.|+||.+
T Consensus       157 ~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~~-~~--~------~-~~~~~d~~~~s~~K~~  222 (390)
T 1elu_A          157 LVIL-SHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSL-PL--D------F-SRLEVDYYAFTGHKWF  222 (390)
T ss_dssp             EEEE-ESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTB-CC--C------T-TTSCCSEEEEESSSTT
T ss_pred             EEEE-eccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCCc-CC--C------h-hhcCCCEEEccccccc
Confidence            6665 999999999998   778888899    99999999999974321 11  1      1 1224568899999943


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhh------------------hhhcccCCCChhHHHHHHHHhcChhhHHhHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKL------------------VIRPMYSSPPIHGASIVATILKDSTMYKEWTLE  317 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  317 (407)
                      + +|.++||+  +++ +++.+.+......                  .......+++...+.++..+++...  +  ..+
T Consensus       223 ~-~~~g~G~~--~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~--~--~~~  294 (390)
T 1elu_A          223 A-GPAGVGGL--YIH-GDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ--R--QGT  294 (390)
T ss_dssp             C-CCTTCEEE--EEC-TTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH--H--HCC
T ss_pred             c-CCCceEEE--EEC-HHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHH--H--cCC
Confidence            3 56779999  565 3333322111000                  0111223456566665555554211  0  012


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---cCCceeEEec---CCCHHHHHHhHhhccEEEcCCC-----eEEecC
Q 015435          318 LKAMADRIISMRQQLFDALSARGTPGDWSHI---IKQIGMFTFT---GLNSEQVAFMTKEYHIYMTSDG-----RISMAG  386 (407)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~gg-----Ris~~~  386 (407)
                      +++.+++++++++++.+.|++.+.   +.+.   .+.++++.|.   +.+.+.+.+.|.++||.+.+++     ||+++.
T Consensus       295 ~~~~~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~  371 (390)
T 1elu_A          295 AEERYQAICQRSEFLWRGLNQLPH---VHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHY  371 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTT---EEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC---cEEecCccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecCCCCeEEEeccc
Confidence            677888999999999999998731   6655   3457776663   2355555555567899998863     999842


Q ss_pred             -CCCCChhHHHHHHHH
Q 015435          387 -LSSKTVPHLTDAIHA  401 (407)
Q Consensus       387 -~~~e~i~~~~~~l~~  401 (407)
                       .+++++++++++|++
T Consensus       372 ~~~~~~i~~~~~~l~~  387 (390)
T 1elu_A          372 ITDEEEINHLLARLAD  387 (390)
T ss_dssp             TCCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHh
Confidence             578999999998865

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.96  E-value=9.7e-29  Score=237.27  Aligned_cols=332  Identities=11%  Similarity=0.065  Sum_probs=215.9

Q ss_pred             CCCCeeeeeeeeeecCCCccc-cchhHHHHHHHHhcccccc--ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           29 TSPVKLNLGVGAYRTEEGKPL-VLNVVRKAEQLLVNDQSRV--KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      .+..++|++.|.+..+.| +. ++.+++++.+++. .....  ..| +.....++++.+++++ +..   . +++|++  
T Consensus        40 ~g~~~lD~~~~~~~~~lG-~~~~p~v~~a~~~~~~-~~~~~~~~~~-~~~~~~~l~~~la~~~-~~~---~-~~~v~~--  109 (419)
T 2eo5_A           40 DGNKYLDFTSGIGVNNLG-WPSHPEVIKIGIEQMQ-KLAHAAANDF-YNIPQLELAKKLVTYS-PGN---F-QKKVFF--  109 (419)
T ss_dssp             TSCEEEESSGGGGTTTTC-BSCCHHHHHHHHHHHT-TSCCCSCSCS-CCHHHHHHHHHHHHHS-SCS---S-CEEEEE--
T ss_pred             CCCEEEEccCChhhhccC-CCCCHHHHHHHHHHHh-hCcccccccc-CCHHHHHHHHHHHHhC-CCC---c-CCEEEE--
Confidence            457899999998643455 44 6777777777775 21110  113 2233456677777765 321   1 479999  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hc-------------CceeeEEEeecCCC--CC-------
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LA-------------GLSVKTYRYYDPAT--RG-------  162 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~-------------G~~~~~v~~~~~~~--~~-------  162 (407)
                      |+||+++++++++++... .||+|++++|+|+++..... ..             +.+++.+|.++...  ++       
T Consensus       110 ~~gg~ea~~~ai~~~~~~-~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~  188 (419)
T 2eo5_A          110 SNSGTEAIEASIKVVKNT-GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENP  188 (419)
T ss_dssp             ESSHHHHHHHHHHHHHTT-SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCH
T ss_pred             eCchHHHHHHHHHHHHHh-hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccc
Confidence            999999999996544322 38999999999986554322 21             12566776632111  12       


Q ss_pred             -----cChhhHH-HHHHcCC--CCcEEEEecCC-CCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          163 -----LNFQGLL-EDLRAAP--SGAIVLLHACA-HNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       163 -----~d~~~l~-~~i~~~~--~~~~v~i~~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                           +|+++++ +.+.+..  .+..+++ ++| +||||. +++.+++++|+++|++||++||+||+|.+|+..+.   .
T Consensus       189 ~~~~~~~~~~l~~~~i~~~~~~~~~~~vi-~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~---~  264 (419)
T 2eo5_A          189 SELVNRVIEFIEDYIFVNLVPPEEVAGIF-FEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK---L  264 (419)
T ss_dssp             HHHHHHHHHHHHHTHHHHTCCGGGEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---S
T ss_pred             hhhHHHHHHHHHHHHHhhccCCCCEEEEE-EeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc---h
Confidence                 4688998 8887321  2333444 455 467896 67899999999999999999999999998876542   1


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhH
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMY  311 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  311 (407)
                      .....+ ....+++   ||||.++ +| +|+||+  +++ +++.     .+ ......+.+.+.+++.++.++++...  
T Consensus       265 ~~~~~~-~~~~d~~---t~sK~~~-~G~~riG~~--~~~-~~~~-----~~-~~~~~~t~~~n~~~~~aa~aal~~~~--  328 (419)
T 2eo5_A          265 FAIENF-NTVPDVI---TLAKALG-GGIMPIGAT--IFR-KDLD-----FK-PGMHSNTFGGNALACAIGSKVIDIVK--  328 (419)
T ss_dssp             SGGGGG-TCCCSEE---EECGGGG-TTTSCCEEE--EEE-GGGC-----CC-------CCCCCHHHHHHHHHHHHHHH--
T ss_pred             hhHHhc-CCCCCEE---Eeccccc-CCccceEEE--EEc-hHhh-----cC-CcccCCCCCCCHHHHHHHHHHHHHHH--
Confidence            111111 1123332   7999999 59 999999  565 3332     23 11223455778889998888886321  


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-C----HHHHHHhHhhccEEEcCCC----eE
Q 015435          312 KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-N----SEQVAFMTKEYHIYMTSDG----RI  382 (407)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~l~~~gi~~~~gg----Ri  382 (407)
                              +.+++++++++++.+.|+++     +....+.+. |.++.+ .    .+ +...|.++||.+.+++    ||
T Consensus       329 --------~~~~~~~~~~~~l~~~L~~~-----~~~~~~~g~-~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~~~~lRi  393 (419)
T 2eo5_A          329 --------DLLPHVNEIGKIFAEELQGL-----ADDVRGIGL-AWGLEYNEKKVRDR-IIGESFKRGLLLLPAGRSAIRV  393 (419)
T ss_dssp             --------HHHHHHHHHHHHHHHHHTTS-----SSEEEEETT-EEEEECSCHHHHHH-HHHHHHHTTEECEEETTTEEEE
T ss_pred             --------HHHHHHHHHHHHHHHHHHHh-----hhheEeeeE-EEEEEEecCccHHH-HHHHHHHCCCEEecCCCCEEEE
Confidence                    26788889999999999765     122344444 445555 2    23 4444446899999864    88


Q ss_pred             EecC-CCCCChhHHHHHHHHHHHhh
Q 015435          383 SMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       383 s~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +++. .+++++++++++|+++++++
T Consensus       394 s~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          394 IPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            6652 48899999999999998765

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.96  E-value=3.2e-28  Score=231.52  Aligned_cols=292  Identities=13%  Similarity=0.054  Sum_probs=200.7

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCCh--HHHHhhcCceeeE
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNH--PKVFTLAGLSVKT  152 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~--~~~~~~~G~~~~~  152 (407)
                      .+..++++.+++++ +.     +++++++  |+|+++++.+++..+  +.+||+|++++|+|+++  ...++..|.+++.
T Consensus        42 ~~~~~l~~~la~~~-g~-----~~~~v~~--t~g~t~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~  111 (392)
T 2z9v_A           42 LLYEKVVDKAQKAM-RL-----SNKPVIL--HGEPVLGLEAAAASL--ISPDDVVLNLASGVYGKGFGYWAKRYSPHLLE  111 (392)
T ss_dssp             HHHHHHHHHHHHHT-TC-----SSCCEEE--SSCTHHHHHHHHHHH--CCTTCCEEEEESSHHHHHHHHHHHHHCSCEEE
T ss_pred             HHHHHHHHHHHHHh-CC-----CCCEEEE--eCCchHHHHHHHHHh--cCCCCEEEEecCCcccHHHHHHHHHcCCceEE
Confidence            45788999999988 43     2479999  999999999995443  78999999999999765  3444568999999


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      ++++  .++.+|++++++.+.+.++++++++ ++|+||||.+++   +++|+++|++||+++|+|++|...... .  + 
T Consensus       112 v~~~--~~~~~d~~~l~~~l~~~~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~-~--~-  181 (392)
T 2z9v_A          112 IEVP--YNEAIDPQAVADMLKAHPEITVVSV-CHHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSSFGGMK-T--H-  181 (392)
T ss_dssp             EECC--TTSCCCHHHHHHHHHHCTTCCEEEE-ESEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBS-C--C-
T ss_pred             eeCC--CCCCCCHHHHHHHHhcCCCCcEEEE-eccCCCCceecc---HHHHHHHHHHcCCeEEEEcccccCCcc-c--c-
Confidence            9983  3456999999999964345677666 899999999887   678888899999999999998632211 1  1 


Q ss_pred             HHHHHHHHcCCcEEEEEecCccc-cccCCCcceeEEeecChhhHHHHHHHH--------------hh--hhhcccCCCCh
Q 015435          233 QSVRMFVADGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASRVESQL--------------KL--VIRPMYSSPPI  295 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~  295 (407)
                        +    ...+..++++|+||.+ +.+|  +||+  +++ +++.+.+....              ..  .......+++.
T Consensus       182 --~----~~~~~d~~~~s~sK~~~~~~g--~G~l--~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (392)
T 2z9v_A          182 --P----EDCKADIYVTGPNKCLGAPPG--LTMM--GVS-ERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSV  250 (392)
T ss_dssp             --G----GGGTCSEEEECSSSTTCCCSC--CEEE--EEC-HHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCH
T ss_pred             --c----ccccceEEEecCcccccCCCc--eeEE--EEC-HHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCH
Confidence              1    1123468889999965 4445  5898  565 44333332100              00  00111224455


Q ss_pred             hHHHHHHHHhcChhhHHhHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-CC---ceeEEec----CCCHHHHH
Q 015435          296 HGASIVATILKDSTMYKEWTLE-LKAMADRIISMRQQLFDALSARGTPGDWSHII-KQ---IGMFTFT----GLNSEQVA  366 (407)
Q Consensus       296 ~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~---~~~~~~~----~~~~~~~~  366 (407)
                      ..+.++..+++..      .+. +++.+++++++++++.+.|++.+    +.+.. +.   .+.+.++    +.+.+.+.
T Consensus       251 ~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  320 (392)
T 2z9v_A          251 SEINGLDVALDLY------LNEGPEAVWARHALTAKAMRAGVTAMG----LSVWAASDSIASPTTTAVRTPDGVDEKALR  320 (392)
T ss_dssp             HHHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSSSGGGBCTTEEEEECCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHH------HhccHHHHHHHHHHHHHHHHHHHHHcC----CeeccCCccccCCceEEEECCCCCCHHHHH
Confidence            5555555555422      233 66788889999999999998875    45444 21   2334433    34555555


Q ss_pred             H-hHhhccEEEcCCC--------eEEe-c-CCCCCChhHHHHHHHHHHHhhC
Q 015435          367 F-MTKEYHIYMTSDG--------RISM-A-GLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       367 ~-~l~~~gi~~~~gg--------Ris~-~-~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      + +++++||.+.++.        ||++ + ..+++++++++++|++++++++
T Consensus       321 ~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~  372 (392)
T 2z9v_A          321 QAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG  372 (392)
T ss_dssp             HHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence            4 4444599998752        9994 5 4588999999999999988653

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.96  E-value=6.1e-28  Score=234.42  Aligned_cols=353  Identities=12%  Similarity=0.026  Sum_probs=218.1

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      .+++++|||+.|.+..+.| +.++.+++++.+++.  .. .+.|....+..+.++++++.+.....  ...++|++  |+
T Consensus        48 ~~G~~~lD~~~~~~~~~lG-~~~p~v~~A~~~~~~--~~-~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~  119 (460)
T 3gju_A           48 NNGRKSIDAFAGLYCVNVG-YGRQKIADAIATQAK--NL-AYYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYF--GL  119 (460)
T ss_dssp             TTCCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHH--HH-SCCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEE--ES
T ss_pred             CCCCEEEECCcchhhccCC-CCCHHHHHHHHHHHH--hc-cccccccccCCHHHHHHHHHHHhhCC--CCcCEEEE--eC
Confidence            4578999999997655677 567788888887775  21 22233333334455555555522211  23478999  99


Q ss_pred             CcccHHHHHHHHHHhh------cCCCeEEecCCCCCChHHHHhhcCc-------------eeeEEEeecC---CCCCcC-
Q 015435          108 SGTGSLRVGAEFLARH------YHQLTIYIPQPTWGNHPKVFTLAGL-------------SVKTYRYYDP---ATRGLN-  164 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~------~~gd~Vi~~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~---~~~~~d-  164 (407)
                      ||++|++.+++++...      .+++.|++.+|+|+++.......+.             .+..++....   ...+.+ 
T Consensus       120 gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~  199 (460)
T 3gju_A          120 SGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSE  199 (460)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCH
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccCh
Confidence            9999999997666433      3568999999999887665443322             2344443110   112233 


Q ss_pred             -------hhhHHHHHHcC-CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH
Q 015435          165 -------FQGLLEDLRAA-PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV  235 (407)
Q Consensus       165 -------~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~  235 (407)
                             +++|++.+.+. +.+..++++.+++|++|. +++.+.+++|+++|++||++||+||+|.+|+..+.   ....
T Consensus       200 ~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~---~~~~  276 (460)
T 3gju_A          200 EQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT---MFGS  276 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHH
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc---cchH
Confidence                   57888888632 123344443556777777 67889999999999999999999999999876542   2222


Q ss_pred             HHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHH---HhhhhhcccCCCChhHHHHHHHHhcChhhH
Q 015435          236 RMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQ---LKLVIRPMYSSPPIHGASIVATILKDSTMY  311 (407)
Q Consensus       236 ~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  311 (407)
                      ..+ ....+   +.+|||.++ .| +|+||+  +++ +++.+.+...   ........+++.+++++.++.++++...- 
T Consensus       277 ~~~-~~~pd---i~t~sK~l~-gG~~~lg~v--~~~-~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-  347 (460)
T 3gju_A          277 DHY-GIKPD---LITIAKGLT-SAYAPLSGV--IVA-DRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE-  347 (460)
T ss_dssp             HHH-TCCCS---EEEECGGGT-TTSSCCEEE--EEE-HHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH-
T ss_pred             hhc-CCCCC---eeeeehhhc-CCCCCeEEE--EEC-HHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh-
Confidence            222 21222   336899987 45 899999  565 4433333221   01123334557888899988888863310 


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec--CC-C-----------HHHHHHhHhhccEEEc
Q 015435          312 KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT--GL-N-----------SEQVAFMTKEYHIYMT  377 (407)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~-----------~~~~~~~l~~~gi~~~  377 (407)
                         .+..++.++..+..++.+.+.++..+.   +....+.|.++.+.  .- .           ...+.+.+.++||.+.
T Consensus       348 ---~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~  421 (460)
T 3gju_A          348 ---MDLVTNAGETGAYFRAELAKAVGGHKN---VGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGR  421 (460)
T ss_dssp             ---TTHHHHHHHHHHHHHHHHHHHHTTSTT---EEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECE
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHhcCCC---eEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEe
Confidence               022344445555555555555555442   34445555544332  10 0           2334444555799999


Q ss_pred             CCC-----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          378 SDG-----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       378 ~gg-----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +++     ||++.. .+++++++++++|+++++++
T Consensus       422 ~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  456 (460)
T 3gju_A          422 AMPQGDILGFAPPLCLTREQADIVVSKTADAVKSV  456 (460)
T ss_dssp             ECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            864     777442 48899999999999998753

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.96  E-value=2.3e-28  Score=229.54  Aligned_cols=332  Identities=15%  Similarity=0.100  Sum_probs=216.7

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      .+..|+|+.+.    .+ +.++.+.+++.+.+.       +|.+..|..++++++++++....+  .++++|++  |+|+
T Consensus        12 ~p~~i~l~~~~----~~-~~~~~v~~a~~~~~~-------~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~--~~g~   75 (359)
T 1svv_A           12 KPKPYSFVNDY----SV-GMHPKILDLMARDNM-------TQHAGYGQDSHCAKAARLIGELLE--RPDADVHF--ISGG   75 (359)
T ss_dssp             ---CEECSCSC----SS-CCCHHHHHHHHHHTT-------CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEE--ESCH
T ss_pred             CCeeEEecCCC----cC-CCCHHHHHHHHHHHh-------hccccccccHHHHHHHHHHHHHhC--CCCccEEE--eCCc
Confidence            45689998754    34 445555555555443       254555666666666666633222  23578999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHH--HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC-----CCcEEE
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK--VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP-----SGAIVL  182 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-----~~~~v~  182 (407)
                      ++++.+++..  .+.+||+|++++|+|..+..  .++..|.+++.+|.  + ++.+|++++++.+.+.+     ++++++
T Consensus        76 t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~  150 (359)
T 1svv_A           76 TQTNLIACSL--ALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPC--P-DGKLRVADIESALHENRSEHMVIPKLVY  150 (359)
T ss_dssp             HHHHHHHHHH--HCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECC--T-TSCCCHHHHHHHHHHSCSTTSCEEEEEE
T ss_pred             hHHHHHHHHH--HhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeC--C-CCeecHHHHHHHHHHHHhccCCCceEEE
Confidence            9999999544  36799999999999998877  47889999999987  2 57899999999997421     245666


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV  262 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  262 (407)
                      + ++| ||||.+++.+++++|+++|++||+++|+|++|.++..+....+...+. +..  ...++..|++|..+ + .++
T Consensus       151 ~-~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~--~~d~~~~s~~K~g~-~-~~~  223 (359)
T 1svv_A          151 I-SNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLAD-IAR--LTDMFYIGATKAGG-M-FGE  223 (359)
T ss_dssp             E-ESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHH-HHH--HCSEEEEECTTTTC-S-SCE
T ss_pred             E-EcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhh-hhh--cCCEEEEecccCCC-C-Cce
Confidence            6 677 799999999999999999999999999999985542211111111111 001  12367788999633 2 456


Q ss_pred             ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015435          263 GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP  342 (407)
Q Consensus       263 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  342 (407)
                      |++  ++ ++++.+.+......  .......+......+..+++..        ..++.+++++++++++.+.|+..+  
T Consensus       224 g~l--~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~l~~~L~~~~--  288 (359)
T 1svv_A          224 ALI--IL-NDALKPNARHLIKQ--RGALMAKGWLLGIQFEVLMKDN--------LFFELGAHSNKMAAILKAGLEACG--  288 (359)
T ss_dssp             EEE--EC-SGGGCTTHHHHHHH--TTCCCTTTHHHHHHHHHHTSTT--------HHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             EEE--EE-cccHHHHHHHHHhc--CCcccccchhhHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHhccCC--
Confidence            777  34 55554444332111  1111111222222233345432        245677888899999999994344  


Q ss_pred             CCcccccCCceeEEecCCCHHHHHHhHhhccEEEcC---CC----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          343 GDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTS---DG----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---gg----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                        +.+..+.+++|.|+.+..+....+++++||.+.+   .+    ||+++. .+++++++++++|+++++++
T Consensus       289 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          289 --IRLAWPSASNQLFPILENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             --CCBSSCCSSSEECBEEEHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             --eEEccCCccceEEEEcCHHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence              6666677888888877766666776755998743   12    888653 47899999999999988654

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.96  E-value=1.1e-27  Score=232.64  Aligned_cols=336  Identities=12%  Similarity=0.080  Sum_probs=215.8

Q ss_pred             CCCCeeeeeeeee-ecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           29 TSPVKLNLGVGAY-RTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        29 ~~~~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      .+.++++++.|.+ .|-.....+.+..+++.+++.  . ....|.+..+..++++++++++ +.       +++++  |+
T Consensus        31 ~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~--~-~~~~y~~~~~~~~l~~~la~~~-~~-------~~~~~--~~   97 (456)
T 2ez2_A           31 AGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM--M-GDEAYAGSENFYHLERTVQELF-GF-------KHIVP--TH   97 (456)
T ss_dssp             TTTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT--T-CCCCSSSCHHHHHHHHHHHHHH-CC-------SEEEE--ES
T ss_pred             CCCCcccCCcccceeeeccccCCccCCHHHHHHhh--c-chhhcccChhHHHHHHHHHHHh-CC-------CcEEE--eC
Confidence            3456677776642 222221122233344555554  1 1335877888999999999998 53       57999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCC-CChHHHHhhcCceeeEEEeec---CC-----CCCcChhhHHHHHHcCCCC
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTW-GNHPKVFTLAGLSVKTYRYYD---PA-----TRGLNFQGLLEDLRAAPSG  178 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y-~~~~~~~~~~G~~~~~v~~~~---~~-----~~~~d~~~l~~~i~~~~~~  178 (407)
                      ||++++.++++.+  +.+||  +++.|+| ..+...+...|.+++.+++..   +.     ++.+|++++++++.+  ++
T Consensus        98 ~gt~a~~~al~~l--~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~--~t  171 (456)
T 2ez2_A           98 QGRGAENLLSQLA--IKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDE--KG  171 (456)
T ss_dssp             SHHHHHHHHHHHH--CCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHH--HC
T ss_pred             CcHHHHHHHHHHh--CCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHh--cc
Confidence            9999999995433  77999  7888999 676888899999999998842   11     267899999999973  33


Q ss_pred             ----cEEEEecCCCC-CCCCCCCHHHHHHHHHHHHHcCceeeecccccc----------ccCCCCCchhHHHHHHHHcCC
Q 015435          179 ----AIVLLHACAHN-PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG----------FASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       179 ----~~v~i~~~p~N-PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~----------~~~~~~~~~~~~~~~~~~~~~  243 (407)
                          +++++ ++|+| |||.+++.+++++|+++|++||++||+||+|..          +.+.+.  ...++........
T Consensus       172 ~~~~~~v~l-~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~--~~~~~~~~~~~~~  248 (456)
T 2ez2_A          172 AENIAYICL-AVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENK--SIAEIVHEMFSYA  248 (456)
T ss_dssp             GGGEEEEEE-ESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTS--CHHHHHHHHHTTC
T ss_pred             ccceeEEEE-eccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCc--chhhhhhhhcccC
Confidence                45555 88999 999999999999999999999999999999975          344432  1111110111223


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhc-ccCCCChhHHHH-HHHHhcChhhHHhHHHHH-HH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRP-MYSSPPIHGASI-VATILKDSTMYKEWTLEL-KA  320 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~-~~  320 (407)
                      +++++ |++|..+ +| +.||+  +++++++.+.+.......... ...+.+.....+ +...++          .+ +.
T Consensus       249 d~~~~-S~kk~~~-~~-~gG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~----------~~~~~  313 (456)
T 2ez2_A          249 DGCTM-SGKKDCL-VN-IGGFL--CMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE----------AMQYE  313 (456)
T ss_dssp             SEEEE-ETTTTTC-CS-SCEEE--EESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHH----------HTCHH
T ss_pred             CEEEE-eCcccCC-CC-ceeEE--EECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHH----------HhHHH
Confidence            45544 7777654 66 78998  565666655544322111110 011222222222 222221          11 23


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-------CH-HH-----HHHhHhhccEEEcC---------
Q 015435          321 MADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-------NS-EQ-----VAFMTKEYHIYMTS---------  378 (407)
Q Consensus       321 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~-----~~~~l~~~gi~~~~---------  378 (407)
                      ..++.+++.+++.+.|++.+    +.+..|.++++.|+.+       +. ++     ...+++++||.+.+         
T Consensus       314 ~~~~~~~~~~~l~~~L~~~g----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~  389 (456)
T 2ez2_A          314 YIEHRVKQVRYLGDKLKAAG----VPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRN  389 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT----CCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBC
T ss_pred             HHHHHHHHHHHHHHHHhcCC----CccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccC
Confidence            33445566678888887765    5666677777777532       22 22     33444678987532         


Q ss_pred             ---------C-C--eEEecC--CCCCChhHHHHHHHHHHHh
Q 015435          379 ---------D-G--RISMAG--LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       379 ---------g-g--Ris~~~--~~~e~i~~~~~~l~~~l~~  405 (407)
                               + +  ||+++.  .+++++++++++|++++++
T Consensus       390 ~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~  430 (456)
T 2ez2_A          390 NVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             TTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence                     1 2  888873  4789999999999998865

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.96  E-value=1.9e-28  Score=232.28  Aligned_cols=293  Identities=15%  Similarity=0.110  Sum_probs=204.7

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeE
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKT  152 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~  152 (407)
                      ....++++.+++++ +...   +.+++++  |+|+++++. +  +...+.+||+|++++|+|.+  +...++..|.+++.
T Consensus        35 ~~~~~~~~~la~~~-~~~~---~~~~v~~--~~g~t~al~-~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~  105 (384)
T 3zrp_A           35 EALAYSLKGLRYVM-GASK---NYQPLII--PGGGTSAME-S--VTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKV  105 (384)
T ss_dssp             HHHHHHHHHHHHHH-TCCT---TSEEEEE--ESCHHHHHH-H--GGGGCCTTCEEEEECSSHHHHHHHHHHTTSSCEEEE
T ss_pred             HHHHHHHHHHHHHh-CCCC---CCcEEEE--cCCcHHHHH-H--HHhhcCCCCEEEEecCCcchHHHHHHHHHcCCcEEE
Confidence            45678888999988 4321   1267999  999999999 7  34557899999999999865  55666788999999


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      ++.+  .++.+|++++++.+.+. +++++++ ++|+||||.+++   +++|.++|++||+++|+|+++...... .  + 
T Consensus       106 v~~~--~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~--~-  174 (384)
T 3zrp_A          106 LRPS--PGDYVKPGEVEEEVRKS-EYKLVAL-THVETSTGVREP---VKDVINKIRKYVELIVVDGVSSVGAEE-V--K-  174 (384)
T ss_dssp             ECCS--TTCCCCHHHHHHHHHHS-CEEEEEE-ESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTTTTSC-C--C-
T ss_pred             ecCC--CCCCCCHHHHHHHHHhC-CCcEEEE-eCCCCCCceECc---HHHHHHHHHhcCCEEEEECcccccCcc-c--c-
Confidence            9983  35678999999999832 4566655 899999999887   778888899999999999998643321 1  0 


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHH------------HHHHhhh-h-----hccc-CCC
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRV------------ESQLKLV-I-----RPMY-SSP  293 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~------------~~~~~~~-~-----~~~~-~~~  293 (407)
                            ....+..++++|+||.++ ++.++|++  +++ +++.+.+            ....... .     .... .++
T Consensus       175 ------~~~~~~d~~~~s~~K~~~-~~~g~g~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  244 (384)
T 3zrp_A          175 ------AEEWNVDVYLTASQKALG-SAAGLGLL--LLS-PKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATP  244 (384)
T ss_dssp             ------TTTTTCSEEEEETTSTTC-CCSSEEEE--EEC-HHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCC
T ss_pred             ------ccccCCCEEEecCccccc-CCCceEEE--EEC-HHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCC
Confidence                  111245688999999885 23458888  454 5544443            1111111 1     1111 145


Q ss_pred             ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC----ceeEEec---CCCHHHHH
Q 015435          294 PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ----IGMFTFT---GLNSEQVA  366 (407)
Q Consensus       294 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~  366 (407)
                      +...+.++..+++...     ...+++.+++++++++++.+.|++.+    +.+..+.    ++.+.++   +.+.+.+.
T Consensus       245 ~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (384)
T 3zrp_A          245 PVHVILQLAEAFRLIE-----KEGIENRIKRHTMVASAIRAGLEALG----LEIVARRPESYSNTVTGVILKVADPQKVL  315 (384)
T ss_dssp             CHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSCSSGGGBCSSEEEEECSSSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHCC----CeEccCcccccCccEEEEECCCCCHHHHH
Confidence            5555555555554221     12267888899999999999999886    5555444    3444444   34566666


Q ss_pred             HhHhhccEEEcCCC-------eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          367 FMTKEYHIYMTSDG-------RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       367 ~~l~~~gi~~~~gg-------Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.|.++||.+.+|.       ||++.. .+++++++++++|+++++++
T Consensus       316 ~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~  363 (384)
T 3zrp_A          316 AGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKL  363 (384)
T ss_dssp             HHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence            55666799998864       888764 47799999999999999765

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.96  E-value=3.8e-29  Score=241.63  Aligned_cols=340  Identities=10%  Similarity=0.007  Sum_probs=214.9

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCC-CceEEeec
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKD-NRVTTVQC  106 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~-~~i~~~~t  106 (407)
                      ..+++++||+.|.+..+.| ..++.+++++.+++.  .  ...|....+..++++++++++....+.  .. +++++  |
T Consensus        40 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~--~--~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~~--~  110 (439)
T 3dxv_A           40 ENGRELIDLSGAWGAASLG-YGHPAIVAAVSAAAA--N--PAGATILSASNAPAVTLAERLLASFPG--EGTHKIWF--G  110 (439)
T ss_dssp             TTSCEEEESSTTTTTCTTC-BSCHHHHHHHHHHHH--S--CSCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEEE--E
T ss_pred             CCCCEEEECCCchhhccCC-CCCHHHHHHHHHHHH--h--ccCccccccCCHHHHHHHHHHHHhCCC--CCCCEEEE--e
Confidence            3568899999998755566 456677777777775  2  233544455556666666666443221  23 68999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCce---------------eeEEEeecCCCCCc----Chhh
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLS---------------VKTYRYYDPATRGL----NFQG  167 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~---------------~~~v~~~~~~~~~~----d~~~  167 (407)
                      +||+++++.+++++..+.+++.|++.+|+|+++.......+..               +..++..+ .....    |+++
T Consensus       111 ~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~  189 (439)
T 3dxv_A          111 HSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRP-YRNDPTGDAILTL  189 (439)
T ss_dssp             SSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSC-BTTBTTSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCc-ccccccHHHHHHH
Confidence            9999999999766544557789999999997766554433222               12233311 00111    6899


Q ss_pred             HHHHHH-cC-CCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          168 LLEDLR-AA-PSGAIVLLHACAHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       168 l~~~i~-~~-~~~~~v~i~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      +++.+. .. ++++++++ .+++|++|.+. +.+.+++|+++|++||++||+||+|.+|...+.   ......+ ....+
T Consensus       190 le~~l~~~~~~~~~~vi~-~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~---~~~~~~~-~~~~d  264 (439)
T 3dxv_A          190 LTEKLAAVPAGSIGAAFI-EPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR---LHCFEHE-GFVPD  264 (439)
T ss_dssp             HHHHHHTSCTTCEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS---SSGGGGT-TCCCS
T ss_pred             HHHHHHhcCCCCEEEEEE-ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch---hhHHHhc-CCCCC
Confidence            999984 22 23445555 66777888765 555699999999999999999999998865432   1111111 11223


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      ++   ||||.++ +|+|+||+  +++     +.+.+.+.......++ ++++++.++.++++...      +  +...++
T Consensus       265 i~---s~sK~~~-~G~riG~~--~~~-----~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~------~--~~~~~~  324 (439)
T 3dxv_A          265 IL---VLGKGLG-GGLPLSAV--IAP-----AEILDCASAFAMQTLH-GNPISAAAGLAVLETID------R--DDLPAM  324 (439)
T ss_dssp             EE---EECGGGG-TTSCCEEE--EEE-----HHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHH------H--TTHHHH
T ss_pred             EE---EEcchhc-CCcceEEE--EEC-----HHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHH------h--cCHHHH
Confidence            33   8999999 69999999  566     5565555544334455 78888888887776331      1  233445


Q ss_pred             HHHHHHHHHHHHHhc----CCCCCcccccCCceeEEecCC---------C---HHHHHHhHhhccEEEcCCC------eE
Q 015435          325 IISMRQQLFDALSAR----GTPGDWSHIIKQIGMFTFTGL---------N---SEQVAFMTKEYHIYMTSDG------RI  382 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~l~~~gi~~~~gg------Ri  382 (407)
                      ++++++++.+.|+++    +.   .....+.+.++ ++.+         +   ...+.+.+.++||.+.+++      ||
T Consensus       325 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi  400 (439)
T 3dxv_A          325 AERKGRLLRDGLSELAKRHPL---IGDIRGRGLAC-GMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEF  400 (439)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT---EEEEEEETTEE-EEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCC---eEEEEEEEEEE-EEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEE
Confidence            555555555555543    31   33344445444 3322         1   2233344445799998864      77


Q ss_pred             EecC-CCCCChhHHHHHHHHHHHhh
Q 015435          383 SMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       383 s~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +++. .+++++++++++|+++++++
T Consensus       401 ~~~~~~t~e~i~~~l~~l~~~l~~~  425 (439)
T 3dxv_A          401 TPPLTITETDIHKALDLLDRAFSEL  425 (439)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6543 47899999999999998764

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.96  E-value=1.3e-28  Score=238.50  Aligned_cols=344  Identities=11%  Similarity=0.030  Sum_probs=222.8

Q ss_pred             CCC--CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc-cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           29 TSP--VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK-EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        29 ~~~--~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      +++  ++|||..|.+..+.| ..++.+++++.+++. ...... .+.+.....++++.+++++ +.     ..+++++  
T Consensus        71 dG~~~~ylD~~s~~~~~~lG-h~~p~v~~A~~~~~~-~~~~~~~~~~~~~~~~~L~e~la~~~-~~-----~~~~v~~--  140 (457)
T 3tfu_A           71 DGQPIEVLDAMSSWWTAIHG-HGHPALDQALTTQLR-VMNHVMFGGLTHEPAARLAKLLVDIT-PA-----GLDTVFF--  140 (457)
T ss_dssp             TTEEEEEEETTHHHHTCTTC-BTCHHHHHHHHHHHH-HCSCCCSSSEECHHHHHHHHHHHHHS-ST-----TEEEEEE--
T ss_pred             CCCeeEEEECCCcHhhhccC-CCCHHHHHHHHHHHH-hccCccccccCCHHHHHHHHHHHHhC-CC-----CcCEEEE--
Confidence            667  899999997655677 567788888877775 111111 2223344567777777766 21     2368999  


Q ss_pred             cCCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHHhhcC--------------ceeeEEEeecCCCCCcCh
Q 015435          106 CLSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVFTLAG--------------LSVKTYRYYDPATRGLNF  165 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~~~~G--------------~~~~~v~~~~~~~~~~d~  165 (407)
                      |+||++|++.+++++....     +| +.|++.+++|.++.......+              ..+..++.........|+
T Consensus       141 ~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~  220 (457)
T 3tfu_A          141 SDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYS  220 (457)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHH
T ss_pred             eCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHH
Confidence            9999999999976664430     44 589999999988765544331              123334332111122478


Q ss_pred             hhHHHHHHcCC-CCcEEEEecC-CCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          166 QGLLEDLRAAP-SGAIVLLHAC-AHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       166 ~~l~~~i~~~~-~~~~v~i~~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      +++++.+.+.+ +++++++ .+ ++||+|.+. +++++++|.++|++||++||+||+|.+|+..+.   ......+ ...
T Consensus       221 ~~le~~l~~~~~~~aavi~-ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~---~~a~~~~-~~~  295 (457)
T 3tfu_A          221 AAFEAQLAQHAGELAAVVV-EPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA---LFAADHA-GVS  295 (457)
T ss_dssp             HHHHHHHHHHGGGEEEEEE-CSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCC
T ss_pred             HHHHHHHHhCCCCEEEEEE-eCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc---hhHhHhc-CCC
Confidence            99999887432 3445555 56 799999875 788899999999999999999999999876542   2222222 222


Q ss_pred             CcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhh-----hhhcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435          243 GECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKL-----VIRPMYSSPPIHGASIVATILKDSTMYKEWTL  316 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  316 (407)
                      .+++   +|||.++ .| +|+||+  +++     +++.+.+..     +....+++.+++++.++.+.++...       
T Consensus       296 pdii---t~sK~l~-gG~~~lG~v--~~~-----~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~-------  357 (457)
T 3tfu_A          296 PDIM---CVGKALT-GGYLSLAAT--LCT-----ADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLL-------  357 (457)
T ss_dssp             CSEE---EECGGGG-TTSSCCEEE--EEE-----HHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHH-------
T ss_pred             ceEE---EEChhhh-CCCcceEEE--EEc-----HHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHh-------
Confidence            3333   8899887 45 799999  565     444444431     1223445778888888887776321       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC----CCHHHHHHhHhhccEEEcCCC---eEEecC-CC
Q 015435          317 ELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG----LNSEQVAFMTKEYHIYMTSDG---RISMAG-LS  388 (407)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~gg---Ris~~~-~~  388 (407)
                       -+...++++++.+++.+.|+++.....+....+.|. |.++.    .+...+.+.|.++||.+.|.+   ||++.. .+
T Consensus       358 -~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~-~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~~~~lRi~p~~~~t  435 (457)
T 3tfu_A          358 -GQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGA-IGVIECDRPVDLAVATPAALDRGVWLRPFRNLVYAMPPYICT  435 (457)
T ss_dssp             -TSCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSS-CEEEEESSCCCHHHHHHHHHHTTEECCCBTTEEEECCCTTCC
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCe-EEEEEECCcccHHHHHHHHHHCCeEEEecCCEEEEECCCCCC
Confidence             123456677777888888876531001333344444 33332    234555544455799999976   776543 48


Q ss_pred             CCChhHHHHHHHHHHHhhC
Q 015435          389 SKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~~~~  407 (407)
                      ++++++++++|++++++++
T Consensus       436 ~eei~~~l~~L~~~l~~~~  454 (457)
T 3tfu_A          436 PAEITQITSAMVEVARLVG  454 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            8999999999999998753

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.96  E-value=3.3e-28  Score=234.38  Aligned_cols=341  Identities=10%  Similarity=0.012  Sum_probs=218.6

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccc--cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR--VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      .+..++|++.+.+..+.| +.++.+++++.+++. ....  ...| +.....++++.+++++ +     .++++|++  |
T Consensus        41 ~g~~ylD~~~~~~~~~lg-~~~p~v~~a~~~~~~-~~~~~~~~~~-~~~~~~~l~~~la~~~-~-----~~~~~v~~--~  109 (429)
T 1s0a_A           41 DGRRLVDGMSSWWAAIHG-YNHPQLNAAMKSQID-AMSHVMFGGI-THAPAIELCRKLVAMT-P-----QPLECVFL--A  109 (429)
T ss_dssp             TSCEEEESSTTTTTCTTC-BSCHHHHHHHHHHHH-HCSCCCCSSE-ECHHHHHHHHHHHHHS-C-----TTCCEEEE--E
T ss_pred             CCCEEEEcCccHhhccCC-CCCHHHHHHHHHHHH-hccccccccc-CCHHHHHHHHHHHHhC-C-----CCCCEEEE--e
Confidence            457899999887533455 446677777777765 1111  1133 2233567778888876 3     23589999  9


Q ss_pred             CCcccHHHHHHHHHHhh-c----CCCeEEecCCCCCChHHHHh-hcC-------------ceeeEEEeecC---CCC-Cc
Q 015435          107 LSGTGSLRVGAEFLARH-Y----HQLTIYIPQPTWGNHPKVFT-LAG-------------LSVKTYRYYDP---ATR-GL  163 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~-~----~gd~Vi~~~p~y~~~~~~~~-~~G-------------~~~~~v~~~~~---~~~-~~  163 (407)
                      +||+++++++++.+... .    +||+|++++|+|+++..... ..|             ..++.++....   ..+ .+
T Consensus       110 ~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (429)
T 1s0a_A          110 DSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDER  189 (429)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGG
T ss_pred             CCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHH
Confidence            99999999997654322 2    58999999999987654332 111             13444544211   123 48


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCC-CCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACA-HNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD  241 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~  241 (407)
                      |++++++.+.+.+.+..+++++.. +||||. ..+.+++++|+++|++||+++|+||+|.+|+..+.   ......+ ..
T Consensus       190 d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~---~~~~~~~-~~  265 (429)
T 1s0a_A          190 DMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFACEHA-EI  265 (429)
T ss_dssp             GGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TC
T ss_pred             HHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch---HHHhhhc-CC
Confidence            999999998742233444442433 699996 56788899999999999999999999998875432   1111111 11


Q ss_pred             CCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhh-----hhcccCCCChhHHHHHHHHhcChhhHHhHH
Q 015435          242 GGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLV-----IRPMYSSPPIHGASIVATILKDSTMYKEWT  315 (407)
Q Consensus       242 ~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  315 (407)
                      ..++   .||||.++ +| +|+||+  +++ ++    +.+.+...     ....+.+++.+++.++.++++...      
T Consensus       266 ~~d~---~t~sK~l~-~G~~~iG~~--~~~-~~----~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~------  328 (429)
T 1s0a_A          266 APDI---LCLGKALT-GGTMTLSAT--LTT-RE----VAETISNGEAGCFMHGPTFMGNPLACAAANASLAILE------  328 (429)
T ss_dssp             CCSE---EEECGGGG-TSSSCCEEE--EEC-HH----HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH------
T ss_pred             CCCE---EEeccccc-CCCccceEE--EeC-HH----HHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHH------
Confidence            2232   37899998 68 999999  565 34    44444332     122345678888888887775321      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCCC---eEEecC-
Q 015435          316 LELKAMADRIISMRQQLFDALSARG-TPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSDG---RISMAG-  386 (407)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~gg---Ris~~~-  386 (407)
                      +  +...++++++++++.+.|++++ .+ .+....+.+. |.|+.+    +.+.+...|.++||.+.+.+   ||+++. 
T Consensus       329 ~--~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~~~~g~-~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~iRis~~~~  404 (429)
T 1s0a_A          329 S--GDWQQQVADIEVQLREQLAPARDAE-MVADVRVLGA-IGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYI  404 (429)
T ss_dssp             T--CHHHHHHHHHHHHHHHHHGGGGGCT-TEEEEEEETT-EEEEEESSCBCHHHHHHHHHHTTEECCCBTTEEEECCCTT
T ss_pred             h--CCHHHHHHHHHHHHHHHHHHHhcCC-CEEEEEEeeE-EEEEEECCcccHHHHHHHHHHCCCEEeccCCEEEEECCCC
Confidence            1  2345667778888888888753 11 1333344443 555433    45555444456899999865   888542 


Q ss_pred             CCCCChhHHHHHHHHHHHh
Q 015435          387 LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+++++++++++|++++++
T Consensus       405 ~t~e~i~~~~~~l~~~~~~  423 (429)
T 1s0a_A          405 ILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             CCHHHHHHHHHHHHHHTSS
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            4889999999999998754

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.96  E-value=4.4e-28  Score=230.88  Aligned_cols=291  Identities=10%  Similarity=0.082  Sum_probs=203.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH--HHHhhcCceeeE
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP--KVFTLAGLSVKT  152 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~--~~~~~~G~~~~~  152 (407)
                      ...++|+.+++++ +.     +++ +|++  |+|+++++.+++.  ..+.+||+|++++|+|..+.  ..++..|.+++.
T Consensus        52 ~~~~l~~~la~~~-~~-----~~~~~v~~--~~g~t~al~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~  121 (396)
T 2ch1_A           52 TMDEVKDGLRYIF-QT-----ENRATMCV--SGSAHAGMEAMLS--NLLEEGDRVLIAVNGIWAERAVEMSERYGADVRT  121 (396)
T ss_dssp             HHHHHHHHHHHHH-TC-----CCSCEEEE--SSCHHHHHHHHHH--HHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHh-CC-----CCCcEEEE--CCcHHHHHHHHHH--HhcCCCCeEEEEcCCcccHHHHHHHHHcCCceEE
Confidence            3789999999998 43     234 7999  9999999999953  34779999999999999884  467889999999


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      ++.+  .++.+|++++++.+++. +++++++ ++|+||||.+++   +++|+++|+++|+++|+|++|. +.....  + 
T Consensus       122 v~~~--~~~~~d~~~l~~~l~~~-~~~~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~-~g~~~~--~-  190 (396)
T 2ch1_A          122 IEGP--PDRPFSLETLARAIELH-QPKCLFL-THGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVAS-LCGVPF--Y-  190 (396)
T ss_dssp             EECC--TTSCCCHHHHHHHHHHH-CCSEEEE-ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT-BTTBCC--C-
T ss_pred             ecCC--CCCCCCHHHHHHHHHhC-CCCEEEE-ECCCCCCceecC---HHHHHHHHHHcCCEEEEEcccc-ccCCcc--c-
Confidence            9983  35679999999999831 5677777 899999999998   7788888999999999999987 322111  1 


Q ss_pred             HHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHH-------H------hh-h-----hhcccCCC
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQ-------L------KL-V-----IRPMYSSP  293 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~-------~------~~-~-----~~~~~~~~  293 (407)
                        +    ...+..+++.|++|.++ ++.++|++  +++ ++..+.+...       .      +. .     ......++
T Consensus       191 --~----~~~~~d~~~~s~~K~~~-~~~g~g~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (396)
T 2ch1_A          191 --M----DKWEIDAVYTGAQKVLG-APPGITPI--SIS-PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTV  260 (396)
T ss_dssp             --T----TTTTCCEEECCCC-CCC-CCSSCEEE--EEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCC
T ss_pred             --h----hhcCcCEEEEcCCcccc-CCCCeEEE--EEC-HHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCC
Confidence              1    11123466789999765 33456888  455 3433332210       0      00 0     01122356


Q ss_pred             ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCce----eEEec----CCCHHHH
Q 015435          294 PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIG----MFTFT----GLNSEQV  365 (407)
Q Consensus       294 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~  365 (407)
                      +..++.++..+++...     .+.+++.+++++++++++.+.|++.|    +.+..+.++    .+.++    +.+.+.+
T Consensus       261 ~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (396)
T 2ch1_A          261 ASNLIFALREALAQIA-----EEGLENQIKRRIECAQILYEGLGKMG----LDIFVKDPRHRLPTVTGIMIPKGVDWWKV  331 (396)
T ss_dssp             CHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHHT----CCBSSCSGGGBCTTEEEEECCTTCCHHHH
T ss_pred             cHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHCC----CeeccCCccccCCceEEEEcCCCCCHHHH
Confidence            6777777776665321     13467788899999999999999886    555555442    23333    3455555


Q ss_pred             H-HhHhhccEEEcCC------C--eEEe-c-CCCCCChhHHHHHHHHHHHhh
Q 015435          366 A-FMTKEYHIYMTSD------G--RISM-A-GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       366 ~-~~l~~~gi~~~~g------g--Ris~-~-~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      . .+++++||.+.+|      +  ||++ + ..+++++++++++|+++++++
T Consensus       332 ~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~  383 (396)
T 2ch1_A          332 SQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT  383 (396)
T ss_dssp             HHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence            4 5556569999875      2  9998 3 236788999999999998764

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.96  E-value=4.1e-28  Score=230.83  Aligned_cols=292  Identities=14%  Similarity=0.125  Sum_probs=201.9

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCCh--HHHHhhcCcee
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNH--PKVFTLAGLSV  150 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~--~~~~~~~G~~~  150 (407)
                      ..+..++++.+++++ +.     +++ +|++  |+|+++++.+++..  .+.+||+|++++|+|+++  ...++..|.++
T Consensus        51 ~~~~~~l~~~la~~~-g~-----~~~~~i~~--~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~  120 (393)
T 2huf_A           51 LKIMDDIKEGVRYLF-QT-----NNIATFCL--SASGHGGMEATLCN--LLEDGDVILIGHTGHWGDRSADMATRYGADV  120 (393)
T ss_dssp             HHHHHHHHHHHHHHH-TC-----CCSEEEEE--SSCHHHHHHHHHHH--HCCTTCEEEEEESSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHh-CC-----CCCcEEEE--cCcHHHHHHHHHHH--HhCCCCEEEEECCCcchHHHHHHHHHcCCee
Confidence            346789999999988 43     223 7989  99999999999543  377999999999999874  23456689999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.+++.  .++.+|++++++.+++. +++++++ ++|+||||.+++   +++|+++|++||+++|+|+++.. .....  
T Consensus       121 ~~v~~~--~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~-~~~~~--  190 (393)
T 2huf_A          121 RVVKSK--VGQSLSLDEIRDALLIH-KPSVLFL-TQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASL-GGAPM--  190 (393)
T ss_dssp             EEEECC--TTCCCCHHHHHHHHHHH-CCSEEEE-ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTB-TTBCC--
T ss_pred             EEEeCC--CCCCCCHHHHHHHHhcc-CCcEEEE-EccCCCccccCC---HHHHHHHHHHcCCEEEEEccccc-CCCCc--
Confidence            999983  34579999999999721 5677777 899999999987   78888889999999999999752 21111  


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCcc-ccccCCCcceeEEeecChhhHHHHHHH---Hhhhh----------------hccc
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKN-MGLYGERVGALSIVCKTEDVASRVESQ---LKLVI----------------RPMY  290 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~v~~~~~~~~~~~~~---~~~~~----------------~~~~  290 (407)
                      +   +    ...+..+++.|+||. ++++|+  ||+  +++ +++.+.+...   .....                +...
T Consensus       191 ~---~----~~~~~d~~~~s~sK~l~g~~G~--G~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (393)
T 2huf_A          191 F---M----DRWEIDAMYTGSQKVLGAPPGI--TPV--SFS-HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYH  258 (393)
T ss_dssp             C---T----TTTTCSEEECCSSSTTCCCSSC--EEE--EEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCS
T ss_pred             c---h----hhcCccEEEECCCcccccCCCe--EEE--EEC-HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCC
Confidence            1   1    112456888999997 456776  888  465 5544443321   00000                0111


Q ss_pred             CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC---ceeEEec----CCCHH
Q 015435          291 SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ---IGMFTFT----GLNSE  363 (407)
Q Consensus       291 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~----~~~~~  363 (407)
                      .+++..++.++..+++...     ...+++.+++++++++++.+.|++.+    +.+..+.   .+++.++    +.+.+
T Consensus       259 ~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (393)
T 2huf_A          259 HTISSTLLYGLREAIAMAC-----EEGLPALIARHEDCAKRLYRGLQDAG----FELYADPKDRLSTVTTIKVPQGVDWL  329 (393)
T ss_dssp             CCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSCGGGBCTTEEEEECCTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHHcC----CeeccCccccCCcEEEEEcCCCCCHH
Confidence            2445555555555554221     01366778889999999999999876    5544442   3434433    34555


Q ss_pred             HHH-HhHhhccEEEcCC------C--eEEe-cC-CCCCChhHHHHHHHHHHHhh
Q 015435          364 QVA-FMTKEYHIYMTSD------G--RISM-AG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       364 ~~~-~~l~~~gi~~~~g------g--Ris~-~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+. .+++++||.+.++      +  ||++ +. .+++++++++++|+++++++
T Consensus       330 ~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~  383 (393)
T 2huf_A          330 KAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAV  383 (393)
T ss_dssp             HHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHc
Confidence            554 5556679999875      2  9998 52 25678999999999998765

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.96  E-value=2.1e-27  Score=229.09  Aligned_cols=332  Identities=11%  Similarity=0.088  Sum_probs=221.3

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ..++.+|||+.|....+.| ..++.+++++.+++. ..... ..| +.....++++.+++++ +.       +++++  +
T Consensus        73 ~~g~~ylD~~sg~~~~~lg-h~~p~v~~Ai~~~~~-~~~~~~~~~-~~~~~~~l~~~la~~~-g~-------~~v~~--~  139 (439)
T 2oat_A           73 VEGRKYFDFLSSYSAVNQG-HCHPKIVNALKSQVD-KLTLTSRAF-YNNVLGEYEEYITKLF-NY-------HKVLP--M  139 (439)
T ss_dssp             TTCCEEEESSGGGGTTTTC-BTCHHHHHHHHHHHT-TCSCCCTTS-EESSHHHHHHHHHHHH-TC-------SEEEE--E
T ss_pred             CCCCEEEEccCCcccccCC-CCCHHHHHHHHHHHH-hcCcccCcc-CCHHHHHHHHHHHHhc-CC-------CEEEE--e
Confidence            3467899999986533333 356677777777775 21111 123 3445778899999887 42       78999  9


Q ss_pred             CCcccHHHHHHHHHHhh-------cCC-CeEEecCCCCCChHH-HHhhcC------------ceeeEEEeecCCCCCcCh
Q 015435          107 LSGTGSLRVGAEFLARH-------YHQ-LTIYIPQPTWGNHPK-VFTLAG------------LSVKTYRYYDPATRGLNF  165 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~-------~~g-d~Vi~~~p~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~~d~  165 (407)
                      +||++|++.+++++..+       .+| |+|++++|+|++... .+...|            .+++.+|.       .|+
T Consensus       140 ~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~  212 (439)
T 2oat_A          140 NTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDL  212 (439)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCH
T ss_pred             CCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCH
Confidence            99999999997665421       356 899999999987644 444444            34455543       288


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      +++++.+.. ++++++++ ...+|+||. +++.+++++|.++|++||++||+||+|.++...+.   ......+ ....+
T Consensus       213 ~~le~~l~~-~~~~~vi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~---~~~~~~~-~~~~D  286 (439)
T 2oat_A          213 PALERALQD-PNVAAFMV-EPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAVDYE-NVRPD  286 (439)
T ss_dssp             HHHHHHTTS-TTEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCS
T ss_pred             HHHHHHhCC-CCEEEEEE-ECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc---chhHHHh-CCCCc
Confidence            999998851 33444444 444567896 57999999999999999999999999988776542   1111111 11122


Q ss_pred             EEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ++   |+||.++ +| +|+||+  +++     +++.+.+.......+++.+++++.++...++...      +  +...+
T Consensus       287 i~---t~sK~l~-~G~~~~G~v--~~~-----~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~~  347 (439)
T 2oat_A          287 IV---LLGKALS-GGLYPVSAV--LCD-----DDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLE------E--ENLAE  347 (439)
T ss_dssp             EE---EECGGGG-TTSSCCEEE--EEC-----HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH------H--TTHHH
T ss_pred             EE---Eeccccc-CCCCCeEEE--EEC-----HHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHh------h--hhHHH
Confidence            22   8999999 68 999999  576     4455545443334455778888888877776331      1  24567


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC------CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCCh
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL------NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTV  392 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i  392 (407)
                      +++++++++.+.|++++.+. +....+.+. +.++.+      +...+...|.++||.+.|++    ||+++. .+++++
T Consensus       348 ~~~~~~~~l~~~L~~l~~~~-~~~~~~~g~-~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i  425 (439)
T 2oat_A          348 NADKLGIILRNELMKLPSDV-VTAVRGKGL-LNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDEL  425 (439)
T ss_dssp             HHHHHHHHHHHHHTTSCTTT-EEEEEEETT-EEEEEECCCSSCCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCC-cEEEEeeee-EEEEEEecCccHHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHH
Confidence            78889999999998875221 111233343 444422      24445444455899999864    886652 488999


Q ss_pred             hHHHHHHHHHHHhh
Q 015435          393 PHLTDAIHAAVTRM  406 (407)
Q Consensus       393 ~~~~~~l~~~l~~~  406 (407)
                      ++++++|+++++++
T Consensus       426 ~~~l~~l~~~l~~~  439 (439)
T 2oat_A          426 RESIEIINKTILSF  439 (439)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998753

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.96  E-value=3.3e-28  Score=234.31  Aligned_cols=331  Identities=11%  Similarity=0.108  Sum_probs=210.2

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      .++.+|||+.|....+.| ..++.+++++.+++. ..... ..| +.....++++.+++++ +.       +++++  |+
T Consensus        63 ~G~~ylD~~~g~~~~~lg-h~~p~v~~ai~~~~~-~~~~~~~~~-~~~~~~~l~~~la~~~-g~-------~~v~~--~~  129 (433)
T 1z7d_A           63 NDKRYYDFLSAYSSVNQG-HCHPNILNAMINQAK-NLTICSRAF-FSVPLGICERYLTNLL-GY-------DKVLM--MN  129 (433)
T ss_dssp             TCCEEEESSHHHHTTTTC-BTCHHHHHHHHHHHT-TCSCCCTTS-EEHHHHHHHHHHHHHH-TC-------SEEEE--ES
T ss_pred             CCCEEEEcccchhhcccC-CCCHHHHHHHHHHHH-hCCCccCCc-CCHHHHHHHHHHHhhc-CC-------CeEEE--eC
Confidence            467899999886433333 356677777777775 21111 123 3334667888888876 42       78999  99


Q ss_pred             CcccHHHHHHHHHHhh-------cCC-CeEEecCCCCCChHH-HHhhcC------------ceeeEEEeecCCCCCcChh
Q 015435          108 SGTGSLRVGAEFLARH-------YHQ-LTIYIPQPTWGNHPK-VFTLAG------------LSVKTYRYYDPATRGLNFQ  166 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~-------~~g-d~Vi~~~p~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~~d~~  166 (407)
                      ||++|++++++++...       .+| |+|++++|+|+++.. .+...|            .+++.+|.       .|++
T Consensus       130 sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~  202 (433)
T 1z7d_A          130 TGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLE  202 (433)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHH
T ss_pred             CHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHH
Confidence            9999999997665321       367 899999999987644 333333            23333432       3899


Q ss_pred             hHHHHHHcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          167 GLLEDLRAAPSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      ++++.+. .++++++++ ...+|+||.+ ++.+++++|.++|++||++||+||+|.++...+.   ......+ ....++
T Consensus       203 ~le~~l~-~~~~~~vi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~---~~~~~~~-~~~~di  276 (433)
T 1z7d_A          203 ALEEELK-DPNVCAFIV-EPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK---LLCVHHY-NVKPDV  276 (433)
T ss_dssp             HHHHHHT-STTEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCSE
T ss_pred             HHHHHhC-CCCEEEEEE-ECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc---chhhHhc-CCCCCE
Confidence            9999984 134455444 4446678975 7899999999999999999999999988766432   1111111 111222


Q ss_pred             EEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       246 i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +   ||||.++ +| +|+||+  +++     +++.+.+.......+++.+++++.++.++++...      +  +...++
T Consensus       277 ~---t~sK~l~-~G~~~~G~v--~~~-----~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~~~  337 (433)
T 1z7d_A          277 I---LLGKALS-GGHYPISAV--LAN-----DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLI------N--EKLCEN  337 (433)
T ss_dssp             E---EECGGGG-TTSSCCEEE--EEC-----HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH------H--TTHHHH
T ss_pred             E---EECcccc-CCCCCeEEE--EEC-----HHHHhhhccccccccCCCCHHHHHHHHHHHHHHH------h--ccHHHH
Confidence            2   8999999 89 999999  566     4455545443334455778888888877775321      1  245567


Q ss_pred             HHHHHHHHHHHHHhc--CCCCCcccccCCceeEEecCC-----CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCCh
Q 015435          325 IISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTV  392 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i  392 (407)
                      ++++++++.+.|+++  +.+. .....+.+. +.++.+     +...+.+.|.++||.+.|++    ||+++. .+++++
T Consensus       338 ~~~~~~~l~~~L~~l~~~~~~-~~~~~~~g~-~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i  415 (433)
T 1z7d_A          338 AEKLGGPFLENLKRELKDSKI-VRDVRGKGL-LCAIEFKNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQL  415 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTT-EEEEEEETT-EEEEEECTTTCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-eEEEEeeee-EEEEEEccChhHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHH
Confidence            777888888888765  4221 122233343 444422     34445444455899999853    887653 488999


Q ss_pred             hHHHHHHHHHHHhh
Q 015435          393 PHLTDAIHAAVTRM  406 (407)
Q Consensus       393 ~~~~~~l~~~l~~~  406 (407)
                      ++++++|+++++++
T Consensus       416 ~~~l~~l~~~l~~~  429 (433)
T 1z7d_A          416 DECTEIIVKTVKFF  429 (433)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998754

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.96  E-value=1.8e-27  Score=231.68  Aligned_cols=347  Identities=12%  Similarity=0.065  Sum_probs=226.9

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++++|||+.|.+..+.| ..++.+++++.+++.  . ..+.+ ...+..+.++++++++.....  ...+++++  +
T Consensus        50 d~~G~~ylD~~s~~~~~~lG-h~~p~v~~A~~~~l~--~-~~~~~-~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~  120 (476)
T 3i5t_A           50 TEDGRRLIDGPAGMWCAQVG-YGRREIVDAMAHQAM--V-LPYAS-PWYMATSPAARLAEKIATLTP--GDLNRIFF--T  120 (476)
T ss_dssp             ETTCCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHH--H-CCCCC-TTTCBCHHHHHHHHHHHTTSS--TTCCEEEE--E
T ss_pred             ECCCCEEEECCCchhhccCC-CCCHHHHHHHHHHHH--h-ccCcc-cCccCCHHHHHHHHHHHhcCC--CCcCEEEE--e
Confidence            34578999999997756667 567788888888876  2 12212 224555677778887755432  23478999  9


Q ss_pred             CCcccHHHHHHHHHHhh------cCCCeEEecCCCCCChHHHHhhcCce-------------eeEEEeecC-CCCCcC--
Q 015435          107 LSGTGSLRVGAEFLARH------YHQLTIYIPQPTWGNHPKVFTLAGLS-------------VKTYRYYDP-ATRGLN--  164 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~------~~gd~Vi~~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~-~~~~~d--  164 (407)
                      +||++|++.+++++...      ..++.|++.+|+|+++.......+..             +..++.... ..+..+  
T Consensus       121 ~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  200 (476)
T 3i5t_A          121 TGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQE  200 (476)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHH
T ss_pred             CchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchH
Confidence            99999999998776554      34679999999999887655543322             222222100 001112  


Q ss_pred             ------hhhHHHHHHcC-CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHH
Q 015435          165 ------FQGLLEDLRAA-PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR  236 (407)
Q Consensus       165 ------~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~  236 (407)
                            +++|++.+.+. +.+..++++.+++|++|. +++++++++|+++|++||++||+||+|.+|+..+.   .+...
T Consensus       201 ~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~---~~~~~  277 (476)
T 3i5t_A          201 AFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE---WFASE  277 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC---ceeee
Confidence                  77888888632 133344444667888886 78999999999999999999999999999987642   22322


Q ss_pred             -HHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhh-------hhcccCCCChhHHHHHHHHhcC
Q 015435          237 -MFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLV-------IRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       237 -~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                       .+ ....+++   ++||.++ .| +|+|++  +++     +++.+.+...       ....+++.+++++.++.++|+.
T Consensus       278 ~~~-~v~pdi~---t~sK~l~-~G~~plg~v--~~~-----~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~  345 (476)
T 3i5t_A          278 KVF-GVVPDII---TFAKGVT-SGYVPLGGL--AIS-----EAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIEL  345 (476)
T ss_dssp             HTT-CCCCSEE---EECGGGG-TTSSCCEEE--EEC-----HHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHH
T ss_pred             ccc-CCCcchh---hhhhhhc-CCCcCeEEE--EEC-----HHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHH
Confidence             11 1122333   5889998 58 999999  565     4555555432       2234557888899988888763


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec-CCC-------------HHHHHHhHhhcc
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT-GLN-------------SEQVAFMTKEYH  373 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~~~l~~~g  373 (407)
                      ..      +  +.+.++++++.+++.+.|+.++....+....+.|.++.+. .-+             ...+...+.++|
T Consensus       346 ~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  417 (476)
T 3i5t_A          346 ME------R--EGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELG  417 (476)
T ss_dssp             HH------H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTT
T ss_pred             HH------h--HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCC
Confidence            31      1  3456677778888888887653111133344555554332 111             223444445579


Q ss_pred             EEEcCCC---eEEec-CCCCCChhHHHHHHHHHHHh
Q 015435          374 IYMTSDG---RISMA-GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       374 i~~~~gg---Ris~~-~~~~e~i~~~~~~l~~~l~~  405 (407)
                      |.+.+.|   ||+.. ..+++++++++++|++++++
T Consensus       418 v~v~~~g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~  453 (476)
T 3i5t_A          418 LIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITE  453 (476)
T ss_dssp             EECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999865   77733 24889999999999999865

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.96  E-value=3.5e-28  Score=234.48  Aligned_cols=342  Identities=12%  Similarity=0.035  Sum_probs=212.0

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      .+..++|++.|.+..+.| +.++++++++.+++.........| +.....++++.+++++ +     .+.++|++  |+|
T Consensus        41 ~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-~-----~~~~~v~~--~~g  110 (433)
T 1zod_A           41 DGRAILDFTSGQMSAVLG-HCHPEIVSVIGEYAGKLDHLFSEM-LSRPVVDLATRLANIT-P-----PGLDRALL--LST  110 (433)
T ss_dssp             TCCEEEETTHHHHTCTTC-BTCHHHHHHHHHHHHHCCCCCTTC-CCHHHHHHHHHHHHHS-C-----TTCCEEEE--ESC
T ss_pred             CCCEEEEcccchhccccC-CCCHHHHHHHHHHHHhCccccccc-CCHHHHHHHHHHHHhC-C-----CCcCEEEE--eCc
Confidence            467899998887533456 456677777777775111011223 2233456677777765 3     12489999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc------------CceeeEEEeecCC--CC--------CcChh
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA------------GLSVKTYRYYDPA--TR--------GLNFQ  166 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~------------G~~~~~v~~~~~~--~~--------~~d~~  166 (407)
                      |+++++.+++++.....+++|++.+|+|+++.......            ...+..++.....  .+        .+|++
T Consensus       111 g~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~  190 (433)
T 1zod_A          111 GAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD  190 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHH
Confidence            99999999755433334689999999998765533311            0123334331110  11        23689


Q ss_pred             hHHHHHHcC-CCCcEEEEecCC-CCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          167 GLLEDLRAA-PSGAIVLLHACA-HNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       167 ~l~~~i~~~-~~~~~v~i~~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      ++++.+.+. +.+..+++ ++| +||||. +++.+++++|+++|++||++||+||+|.+|+..+.   ......+ ....
T Consensus       191 ~le~~l~~~~~~~~~~vi-~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~---~~~~~~~-~~~~  265 (433)
T 1zod_A          191 YAFDLIDRQSSGNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQRD-GVTP  265 (433)
T ss_dssp             HHHHHHHHHCCSCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCC
T ss_pred             HHHHHHHhcCCCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch---HhHHhhc-CCCC
Confidence            999988742 12333444 344 588996 57899999999999999999999999998876432   1122222 2122


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh--hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI--RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      +   +.||||.++. |+|+||+  +++ +++    .+.+....  ...+.+.+.+++.++..+++...      +  +..
T Consensus       266 d---i~s~sK~~~~-G~~ig~~--~~~-~~~----~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~------~--~~~  326 (433)
T 1zod_A          266 D---ILTLSKTLGA-GLPLAAI--VTS-AAI----EERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ------R--DGL  326 (433)
T ss_dssp             S---EEEECHHHHT-TSSCEEE--EEC-HHH----HHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHH------H--TTH
T ss_pred             C---EEEecccccC-CCCeeEE--EEh-HHH----HHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHH------h--CCH
Confidence            2   3489999995 9999999  565 444    44343321  11345678888888877775321      1  134


Q ss_pred             HHHHHHHHHHHHHHHHhcC--CCCCcccccCCceeEEecCC------------CHHHHHHhHhhccEEEcCC------C-
Q 015435          322 ADRIISMRQQLFDALSARG--TPGDWSHIIKQIGMFTFTGL------------NSEQVAFMTKEYHIYMTSD------G-  380 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~~~~g------g-  380 (407)
                      .++++++++++.+.|+++.  .+ .+....+.+. |.|+.+            ....+...+.++||.+.++      + 
T Consensus       327 ~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~  404 (433)
T 1zod_A          327 VARANVMGDRLRRGLLDLMERFD-CIGDVRGRGL-LLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGV  404 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETT-EEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEE-EEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCE
Confidence            4566666777777766541  11 0233344444 444422            1333444444689999875      3 


Q ss_pred             -eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 -RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 -Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                       ||+++. .+++++++++++|+++++++
T Consensus       405 lRi~~~~~~t~~~i~~~l~~l~~~l~~~  432 (433)
T 1zod_A          405 FRIAPPLTVSEDEIDLGLSLLGQAIERA  432 (433)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence             776542 48899999999999998764

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.96  E-value=6.1e-28  Score=226.07  Aligned_cols=286  Identities=14%  Similarity=0.069  Sum_probs=199.8

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH--HHHhhcCceeeE
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP--KVFTLAGLSVKT  152 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~--~~~~~~G~~~~~  152 (407)
                      .+..++++.+++++ +.     +++++++  |+|+++++.++++.  .+.+||+|++++|+|+++.  ..++..|.+++.
T Consensus        34 ~~~~~l~~~la~~~-g~-----~~~~i~~--~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~  103 (352)
T 1iug_A           34 EVFLKARGLLREAF-RT-----EGEVLIL--TGSGTLAMEALVKN--LFAPGERVLVPVYGKFSERFYEIALEAGLVVER  103 (352)
T ss_dssp             HHHHHHHHHHHHHH-TC-----SSEEEEE--ESCHHHHHHHHHHH--HCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHh-CC-----CCceEEE--cCchHHHHHHHHHh--ccCCCCeEEEEeCCchhHHHHHHHHHcCCceEE
Confidence            45789999999998 43     2478999  99999999999533  3779999999999998865  445668999999


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc--CceeeeccccccccCCCCCc
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK--GLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~li~D~~y~~~~~~~~~~  230 (407)
                      ++.+  .++.+|++++++     ++++++++ ++|+||||.+++   +++|.++|++|  |+++|+|++|.. .....  
T Consensus       104 v~~~--~~~~~d~~~l~~-----~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~-~~~~~--  169 (352)
T 1iug_A          104 LDYP--YGDTPRPEDVAK-----EGYAGLLL-VHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTSL-LVGEV--  169 (352)
T ss_dssp             EECC--TTCCCCTTTSCC-----SSCSEEEE-ESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTTB-TTBCC--
T ss_pred             EeCC--CCCCCCHHHHhc-----cCCcEEEE-EEecCCcceecC---HHHHHHHHHhhCCCCEEEEECCccc-cCcce--
Confidence            9983  345688888876     35677666 899999999887   67888889999  999999999862 21111  


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccc-cccCCCcceeEEeecChhhHHH---------HHHHHhhh-hhcccCCCChhHHH
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASR---------VESQLKLV-IRPMYSSPPIHGAS  299 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~  299 (407)
                      +   +    ...+..++++|+||.+ +.+  ++||+  +++ ++..++         +....... ......+++...+.
T Consensus       170 ~---~----~~~~~d~~~~s~~K~~~~~~--g~G~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (352)
T 1iug_A          170 A---L----EAMGVDAAASGSQKGLMCPP--GLGFV--ALS-PRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVL  237 (352)
T ss_dssp             C---S----GGGTCSEEEEESSSTTCCCS--CEEEE--EEC-HHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHH
T ss_pred             e---c----cccCeeEEEecCcccccCCC--ceeEE--EEC-HHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHH
Confidence            1   1    1113467899999954 433  47998  565 332222         11111111 11223356666666


Q ss_pred             HHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC-ceeEEec----CCCHHHHHHhHhhccE
Q 015435          300 IVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ-IGMFTFT----GLNSEQVAFMTKEYHI  374 (407)
Q Consensus       300 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~l~~~gi  374 (407)
                      ++..+++...      +.+++.+++++++++++.+.|++.+    +.+..+. .+.+.|+    +.+.+.+.+.|.++||
T Consensus       238 a~~~al~~~~------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi  307 (352)
T 1iug_A          238 AVAAVLEEVL------PRLEEHLALKAWQNALLYGVGEEGG----LRPVPKRFSPAVAAFYLPEGVPYARVKEAFAQRGA  307 (352)
T ss_dssp             HHHHHHHHHG------GGHHHHHHHHHHHHHHHHHHHHHTT----CEESCSSBCTTCEEEECCTTCCHHHHHHHHHTTTE
T ss_pred             HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCC----CcccccccCCeEEEEEcCCCCCHHHHHHHHHHCCE
Confidence            6666665321      2256778889999999999999875    5655553 3444444    3456656555566799


Q ss_pred             EEcCC------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          375 YMTSD------G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       375 ~~~~g------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .+.++      +  ||+++. .+++++++++++|+++++++
T Consensus       308 ~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  348 (352)
T 1iug_A          308 VIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  348 (352)
T ss_dssp             ECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence            99875      2  898875 35799999999999998764

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.96  E-value=1.3e-27  Score=230.27  Aligned_cols=329  Identities=14%  Similarity=0.082  Sum_probs=204.6

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+++++|++.|.+..+.| ..++.+++++.+++.  ......| +.....++++.+++++.+       .+++++  |+
T Consensus        50 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~A~~~~~~--~~~~~~~-~~~~~~~la~~l~~~~~~-------~~~v~~--~~  116 (429)
T 4e77_A           50 VDGKAYIDYVGSWGPMILG-HNHPAIRQAVIEAVE--RGLSFGA-PTEMEVKMAQLVTDLVPT-------MDMVRM--VN  116 (429)
T ss_dssp             TTCCEEEESSGGGTTCTTC-BTCHHHHHHHHHHHT--TCSCCSS-CCHHHHHHHHHHHHHSTT-------CSEEEE--ES
T ss_pred             CCCCEEEECCCchhccccC-CCCHHHHHHHHHHHH--hCcccCC-CCHHHHHHHHHHHhhCCC-------CCEEEE--eC
Confidence            4578999999998755666 557778888888775  2222234 445566777777776621       389999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCc-------------------eeeEEEeecCCCCCcChhh
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGL-------------------SVKTYRYYDPATRGLNFQG  167 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~-------------------~~~~v~~~~~~~~~~d~~~  167 (407)
                      ||+++++.++++......++.|++.+++|+++..... ..|.                   .+..++.       .|+++
T Consensus       117 sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~  189 (429)
T 4e77_A          117 SGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-------NDLAS  189 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT-------TCHHH
T ss_pred             cHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-------CCHHH
Confidence            9999999997765555577899999999987765221 1111                   1111111       27899


Q ss_pred             HHHHHHcCCCCcEEEEecCCCCCCCCC--CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          168 LLEDLRAAPSGAIVLLHACAHNPTGVD--PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       168 l~~~i~~~~~~~~v~i~~~p~NPtG~~--~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +++.+.+.+.+..+++ ++|+||+|.+  .+.+.+++|.++|++||++||+||+|.+| ..+.   ......+ ....+ 
T Consensus       190 le~~l~~~~~~~~~vi-~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~---~~~~~~~-~~~pd-  262 (429)
T 4e77_A          190 VRQAFEQYPQEVACII-VEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL---AGAQDYY-HVIPD-  262 (429)
T ss_dssp             HHHHHHHSTTTEEEEE-ECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT---TCHHHHT-TCCCS-
T ss_pred             HHHHHHhcCCCEEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc---chHHHhc-CCCCC-
Confidence            9999975433444445 5677776544  34556999999999999999999999988 4432   2222222 11122 


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh---hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                        +.|+||.++ +|+|+||+  +++     +.+.+.+...   ....+++.+++++.++.+.++...      +  +...
T Consensus       263 --i~t~sK~~~-~G~~~G~~--~~~-----~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~  324 (429)
T 4e77_A          263 --LTCLGKIIG-GGMPVGAF--GGR-----REVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEIS------Q--VGVY  324 (429)
T ss_dssp             --EEEEEGGGG-TTSCCEEE--EEC-----HHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHT------S--TTHH
T ss_pred             --eeeeccccc-CCCCeEEE--EEC-----HHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHH------h--cCHH
Confidence              348999999 79999998  565     4455545432   122344678888888887776221      0  1223


Q ss_pred             HHHHHHHHHHHHHHHh----cCCCCCcccccCCceeEEecCC--C----------------HHHHHHhHhhccEEEcCCC
Q 015435          323 DRIISMRQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGL--N----------------SEQVAFMTKEYHIYMTSDG  380 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~--~----------------~~~~~~~l~~~gi~~~~gg  380 (407)
                      ++++++++++.+.|++    .+    +....+..|.+.++.+  +                .+.+.+.|.++||.+.+++
T Consensus       325 ~~~~~~~~~l~~~L~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~  400 (429)
T 4e77_A          325 ETLTELTDSLATGLRHAAKEEN----IPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA  400 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT----CCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC----CceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecC
Confidence            3344444444444433    34    2222222334444432  1                0333444445799999986


Q ss_pred             --eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          381 --RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       381 --Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                        |+++.. .+++++++++++|++++++
T Consensus       401 ~~~~~~~~~~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          401 FEAGFMSLAHSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             TSCEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEeccCCHHHHHHHHHHHHHHHHh
Confidence              555433 4889999999999998865

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.96  E-value=1.4e-27  Score=226.97  Aligned_cols=288  Identities=12%  Similarity=0.105  Sum_probs=200.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEE
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTY  153 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v  153 (407)
                      ...++++.+++++ +..    .++++++  |+||++++.++++  ..+.+||+|+++.++|.+  +...++..|.+++.+
T Consensus        57 ~~~~l~~~la~~~-~~~----~~~~v~~--~~gg~~al~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~  127 (393)
T 3kgw_A           57 IMEEIKQGIQYVF-QTR----NPLTLVV--SGSGHCAMETALF--NLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQM  127 (393)
T ss_dssp             HHHHHHHHHHHHH-TCC----CSEEEEE--SCCTTTHHHHHHH--HHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHh-CCC----CCcEEEE--eCCcHHHHHHHHH--hcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEEE
Confidence            4567888888887 432    1246889  9999999999853  447899999999888753  366778899999999


Q ss_pred             EeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435          154 RYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ  233 (407)
Q Consensus       154 ~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~  233 (407)
                      +.  +.++.+|++++++.+.+. +++++++ ++|+||||.+++   +++|.++|++||+++|+|++|...... .  +  
T Consensus       128 ~~--~~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~g~~~-~--~--  195 (393)
T 3kgw_A          128 IK--KPGEHYTLQEVEEGLAQH-KPVLLFL-VHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVASLGGVP-I--Y--  195 (393)
T ss_dssp             EC--CTTCCCCHHHHHHHHHHH-CCSEEEE-ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTTTTSC-C--C--
T ss_pred             eC--CCCCCCCHHHHHHHHhhC-CCcEEEE-eccCCcchhhcc---HHHHHHHHHHcCCEEEEECCccccCcc-c--c--
Confidence            98  334579999999999831 5677777 889999999887   778888899999999999998632211 1  0  


Q ss_pred             HHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhh-----------------------ccc
Q 015435          234 SVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIR-----------------------PMY  290 (407)
Q Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~-----------------------~~~  290 (407)
                           ....+..+++.|+||.++ ++.++|++  +++ +++    .+.+.....                       ...
T Consensus       196 -----~~~~~~d~~~~s~sK~~~-~~~g~g~~--~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (393)
T 3kgw_A          196 -----MDQQGIDIMYSSSQKVLN-APPGISLI--SFN-DKA----KYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIH  262 (393)
T ss_dssp             -----TTTTTCCEEEEESSSTTC-CCSSCEEE--EEC-HHH----HHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCC
T ss_pred             -----hhhcCCCEEEecCccccc-CCCceeEE--EEC-HHH----HHHHhccCCCCCceeecHHHHHHhhhhccccCCCC
Confidence                 011235688899999774 23448888  455 443    333332110                       112


Q ss_pred             CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC----CceeEEec----CCCH
Q 015435          291 SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK----QIGMFTFT----GLNS  362 (407)
Q Consensus       291 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~~~~~~~----~~~~  362 (407)
                      .+++..++.++..+++...     ...+++.+++++++++++.+.|++.+    +.+..+    ..+++.++    +.+.
T Consensus       263 ~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (393)
T 3kgw_A          263 HTTPVTSLYCLRESLALIA-----EQGLENCWRRHREATAHLHKHLQEMG----LKFFVKDPEIRLPTITTVTVPAGYNW  333 (393)
T ss_dssp             CCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSSSGGGBCSSEEEEECCTTBCH
T ss_pred             CCCCHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHcC----CeeccCChhhcCCeEEEEeCCCCCCH
Confidence            3456666666655554221     12367888999999999999999886    444422    22344443    3355


Q ss_pred             HHHH-HhHhhccEEEcCCC--------eEEe-cC-CCCCChhHHHHHHHHHHHhh
Q 015435          363 EQVA-FMTKEYHIYMTSDG--------RISM-AG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       363 ~~~~-~~l~~~gi~~~~gg--------Ris~-~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.+. .+++++||.+.+|.        ||++ +. .+++++++++++|+++++++
T Consensus       334 ~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~  388 (393)
T 3kgw_A          334 RDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHC  388 (393)
T ss_dssp             HHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence            5544 55565599999852        9997 53 37899999999999999765

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.96  E-value=4.2e-28  Score=233.09  Aligned_cols=285  Identities=15%  Similarity=0.171  Sum_probs=200.6

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh--hcCCCeEEecCCCCCChHHHHh---hcCcee
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR--HYHQLTIYIPQPTWGNHPKVFT---LAGLSV  150 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~--~~~gd~Vi~~~p~y~~~~~~~~---~~G~~~  150 (407)
                      ...++++.+++++ +.     ++++|++  |+|+++|+.++++.+..  ..+||+|+++.|+|+.+...+.   ..|.++
T Consensus        69 ~~~~l~~~la~~~-~~-----~~~~v~~--~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~  140 (423)
T 3lvm_A           69 AVDIARNQIADLV-GA-----DPREIVF--TSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEV  140 (423)
T ss_dssp             HHHHHHHHHHHHH-TC-----CGGGEEE--ESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHc-CC-----CCCeEEE--eCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEE
Confidence            4578888899888 42     2479999  99999999999643321  1279999999999999887774   559999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +.++.+  .++.+|++++++++.  ++++++++ ++|+||||.+++   +++|+++|++||++||+|++|...... .  
T Consensus       141 ~~v~~~--~~~~~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~--  209 (423)
T 3lvm_A          141 TYLAPQ--RNGIIDLKELEAAMR--DDTILVSI-MHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP-I--  209 (423)
T ss_dssp             EEECCC--TTSCCCHHHHHHHCC--TTEEEEEC-CSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C--
T ss_pred             EEeccC--CCCccCHHHHHHhcC--CCcEEEEE-eCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-c--
Confidence            999983  367789999999987  44555555 999999999998   777888899999999999998643321 1  


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh-------hcccCCCChhHHHHHHH
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI-------RPMYSSPPIHGASIVAT  303 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  303 (407)
                      +       ....+..+++.|+||.+|.+|  +|++  ++++ +.    ...+....       .....+++...+.++..
T Consensus       210 ~-------~~~~~~di~~~s~sK~~g~~g--~G~~--~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  273 (423)
T 3lvm_A          210 D-------LSQLKVDLMSFSGHKIYGPKG--IGAL--YVRR-KP----RVRIEAQMHGGGHERGMRSGTLPVHQIVGMGE  273 (423)
T ss_dssp             C-------TTTSCCSEEEEESTTTTSCSS--CEEE--EECB-TT----BCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHH
T ss_pred             C-------hhhcCCCEEEechHHhcCCCC--eEEE--EEec-cc----cCCCCccccCCcccccccCCCCCHHHHHHHHH
Confidence            0       111245688999999887666  8898  4552 21    11122211       11223455556665555


Q ss_pred             HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCc----eeEE--ecCCCHHHHHHhHhhccEEEc
Q 015435          304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQI----GMFT--FTGLNSEQVAFMTKEYHIYMT  377 (407)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~l~~~gi~~~  377 (407)
                      +++..      .+.+++.+++++++++++.+.|++++.   +.+..+.+    +++.  +.+.+.+.+...|.+  |.+.
T Consensus       274 al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~  342 (423)
T 3lvm_A          274 AYRIA------KEEMATEMERLRGLRNRLWNGIKDIEE---VYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVS  342 (423)
T ss_dssp             HHHHH------HHHHHHHHHHHHHHHHHHHHHHTTSTT---EEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECB
T ss_pred             HHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heec
Confidence            55422      234678889999999999999988732   55554432    2322  235567766666665  7776


Q ss_pred             CC-------------------------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          378 SD-------------------------G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       378 ~g-------------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +|                         +  ||+++. .+++++++++++|+++++++
T Consensus       343 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~  399 (423)
T 3lvm_A          343 SGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL  399 (423)
T ss_dssp             CCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            64                         3  888874 46789999999999998754

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.96  E-value=1.5e-27  Score=228.32  Aligned_cols=291  Identities=11%  Similarity=0.042  Sum_probs=202.8

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEEE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTYR  154 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~  154 (407)
                      ..++++.+++++ +...    ++.+++  |+|+++++.+++.  ..+.+||+|++++|+|.+  +...++..|.+++.+|
T Consensus        48 ~~~~~~~la~~~-~~~~----~~~v~~--~~sgt~al~~~~~--~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~  118 (411)
T 3nnk_A           48 MNEVMALYRGVF-RTEN----RWTMLV--DGTSRAGIEAILV--SAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIE  118 (411)
T ss_dssp             HHHHHHHHHHHH-TCCC----SEEEEE--ESCHHHHHHHHHH--HHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHh-CCCC----CcEEEE--CCCcHHHHHHHHH--HhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEe
Confidence            567788888887 4321    123777  9999999999953  447899999999999977  8888889999999999


Q ss_pred             eecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435          155 YYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS  234 (407)
Q Consensus       155 ~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~  234 (407)
                      .  +.++.+|++++++.+.+. +++++++ ++|+||||.+.+   +++|+++|++||+++|+|+++...... .  +   
T Consensus       119 ~--~~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~--~---  185 (411)
T 3nnk_A          119 V--PWGEVFTPDQVEDAVKRI-RPRLLLT-VQGDTSTTMLQP---LAELGEICRRYDALFYTDATASLGGNP-L--E---  185 (411)
T ss_dssp             C--CTTCCCCHHHHHHHHHHH-CCSEEEE-ESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTBTTBC-C--C---
T ss_pred             c--CCCCCCCHHHHHHHHhhC-CCeEEEE-eCCCCCcceecc---HHHHHHHHHHcCCEEEEECCcccCCcc-c--c---
Confidence            8  445778999999999732 5677777 889999999877   778888899999999999997543221 1  0   


Q ss_pred             HHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH----------------hh--------------
Q 015435          235 VRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL----------------KL--------------  284 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~----------------~~--------------  284 (407)
                          ....+..+++.|++|.++ ++.++|++  +++ +++.+.+....                ..              
T Consensus       186 ----~~~~~~d~~~~s~~K~l~-~~~g~g~~--~~~-~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~  257 (411)
T 3nnk_A          186 ----TDVWGLDAVSAGMQKCLG-GPSGTSPI--TLS-ARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDY  257 (411)
T ss_dssp             ----TTTTTCSEEECCSTTTTC-CCSSEEEE--EEC-HHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHH
T ss_pred             ----hhccCCcEEEecCccccC-CCCceEEE--EEC-HHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhh
Confidence                011235688999999754 33468888  455 44443333211                00              


Q ss_pred             --hhhcccCCCChhHHHHHHHHhcChhhHHhHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCc---eeEEec
Q 015435          285 --VIRPMYSSPPIHGASIVATILKDSTMYKEWTLE-LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQI---GMFTFT  358 (407)
Q Consensus       285 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~  358 (407)
                        .......+++...+.++..+++..      .+. +++.+++++++++++.+.|++.+    +.+..+.+   +.+.++
T Consensus       258 ~~~~~~~~~~~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~  327 (411)
T 3nnk_A          258 WGPERLNHHTEATTALFGARECARLI------LQEGLDYGIARHKLHGDALVKGIQAMG----LETFGDLKHKMNNVLGV  327 (411)
T ss_dssp             HSTTCCCCSCCCHHHHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHTT----CCBCSCGGGBCSSEEEE
T ss_pred             hccccCCCCCCCHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHcC----CEeCCCcccccccEEEE
Confidence              001112345555666655555422      133 67888999999999999999886    45443332   334433


Q ss_pred             ----CCCHHHHH-HhHhhccEEEcCC------C--eEEe-cC-CCCCChhHHHHHHHHHHHhhC
Q 015435          359 ----GLNSEQVA-FMTKEYHIYMTSD------G--RISM-AG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       359 ----~~~~~~~~-~~l~~~gi~~~~g------g--Ris~-~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                          +.+.+.+. .+++++||.+.+|      +  ||++ +. .+++++++++++|++++++++
T Consensus       328 ~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~  391 (411)
T 3nnk_A          328 VIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK  391 (411)
T ss_dssp             ECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence                34565554 5556669999875      1  9997 53 367999999999999998653

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.96  E-value=2.5e-27  Score=227.12  Aligned_cols=317  Identities=14%  Similarity=0.096  Sum_probs=212.8

Q ss_pred             cccchhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceE-EeecCCcccHHHHHHHHHHhhc
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVT-TVQCLSGTGSLRVGAEFLARHY  124 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~-~~~t~g~t~a~~~~~~~~~~~~  124 (407)
                      |.|.+...++.+.+.  ......|.+  .....++++.+++++ +.     ++++++ +  ++|+++++.+++  ...+.
T Consensus        17 p~p~~~~~~v~~a~~--~~~~~~~~~~~~~~~~~l~~~la~~~-g~-----~~~~~~~~--~~s~t~al~~~~--~~l~~   84 (416)
T 3isl_A           17 PGPVEVDPRVLRVMS--TPVVGQFDPAFTGIMNETMEMLRELF-QT-----KNRWAYPI--DGTSRAGIEAVL--ASVIE   84 (416)
T ss_dssp             SSSCCCCHHHHHHTT--SCCCCTTSHHHHHHHHHHHHHHHHHT-TC-----CCSEEEEE--ESCHHHHHHHHH--HHHCC
T ss_pred             CCCcCcCHHHHHHhc--ccCCCCccHHHHHHHHHHHHHHHHHh-CC-----CCCcEEEe--cCcHHHHHHHHH--HHhcC
Confidence            445555566666665  222223322  233667788888877 42     234454 7  899999999995  44478


Q ss_pred             CCCeEEecCCCCCC--hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHH
Q 015435          125 HQLTIYIPQPTWGN--HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQ  202 (407)
Q Consensus       125 ~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~  202 (407)
                      +||+|++++|+|++  +...++..|.+++.++.+  .++.+|++++++++.+ ++++++++ ++|+||||.+.+   +++
T Consensus        85 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~-~~~~~v~~-~~~~nptG~~~~---l~~  157 (416)
T 3isl_A           85 PEDDVLIPIYGRFGYLLTEIAERYGANVHMLECE--WGTVFDPEDIIREIKK-VKPKIVAM-VHGETSTGRIHP---LKA  157 (416)
T ss_dssp             TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH-HCCSEEEE-ESEETTTTEECC---CHH
T ss_pred             CCCEEEEecCCcccHHHHHHHHhcCCeeEEEecC--CCCCCCHHHHHHHHhh-CCCcEEEE-EccCCCCceecC---HHH
Confidence            99999999999987  677888999999999983  4467899999999973 24677766 899999999887   778


Q ss_pred             HHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH
Q 015435          203 IRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL  282 (407)
Q Consensus       203 i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~  282 (407)
                      |+++|++||+++|+|++++..... .  +       ....+..+++.|++|.++ ++.++|++  +++ +++.+.+....
T Consensus       158 i~~l~~~~~~~li~D~a~~~~~~~-~--~-------~~~~~~d~~~~s~~K~l~-g~~g~g~~--~~~-~~~~~~~~~~~  223 (416)
T 3isl_A          158 IGEACRTEDALFIVDAVATIGGCE-V--K-------VDEWKIDAAIGGTQKCLS-VPSGMAPI--TYN-ERVADVIAARK  223 (416)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTSC-C--C-------TTTTTCSEEECCSSSTTC-CCSSEEEE--EEC-HHHHHHHHTC-
T ss_pred             HHHHHHHcCCEEEEECCccccCCC-c--c-------hhhcCCCEEEecCccccC-CCCCeEEE--EEC-HHHHHHhhccc
Confidence            888899999999999997633321 1  1       011235688999999754 33457888  454 44444333100


Q ss_pred             -------------------------------h---hhhhcccCCCChhHHHHHHHHhcChhhHHhHHHH-HHHHHHHHHH
Q 015435          283 -------------------------------K---LVIRPMYSSPPIHGASIVATILKDSTMYKEWTLE-LKAMADRIIS  327 (407)
Q Consensus       283 -------------------------------~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~  327 (407)
                                                     .   ........+++...+.++..+++..      .+. +++.++++++
T Consensus       224 ~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~  297 (416)
T 3isl_A          224 KVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLV------LEEGLETRFERHRH  297 (416)
T ss_dssp             -----------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHH------HHHCHHHHHHHHHH
T ss_pred             cccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH------HHhhHHHHHHHHHH
Confidence                                           0   0011112245666666665555432      133 6788899999


Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCc---eeEEec----CCCHHHHH-HhHhhccEEEcCC------C--eEEecC-CCCC
Q 015435          328 MRQQLFDALSARGTPGDWSHIIKQI---GMFTFT----GLNSEQVA-FMTKEYHIYMTSD------G--RISMAG-LSSK  390 (407)
Q Consensus       328 ~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~-~~l~~~gi~~~~g------g--Ris~~~-~~~e  390 (407)
                      +++++.+.|++.+    +.+..+.+   +.+.++    +.+.+.+. .+++++||.+.+|      +  ||++.. .+++
T Consensus       298 ~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~  373 (416)
T 3isl_A          298 HEAALAAGIKAMG----LRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRK  373 (416)
T ss_dssp             HHHHHHHHHHHTT----CCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSH
T ss_pred             HHHHHHHHHHHcC----CEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcH
Confidence            9999999999876    55554432   233333    34555554 5556569999875      1  999832 4666


Q ss_pred             C-hhHHHHHHHHHHHhhC
Q 015435          391 T-VPHLTDAIHAAVTRMG  407 (407)
Q Consensus       391 ~-i~~~~~~l~~~l~~~~  407 (407)
                      + +++++++|++++++++
T Consensus       374 e~i~~~~~~l~~~~~~~~  391 (416)
T 3isl_A          374 ENVLFVLAGLEAVLLRHN  391 (416)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            6 9999999999998753

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.96  E-value=1.2e-27  Score=226.55  Aligned_cols=316  Identities=14%  Similarity=0.107  Sum_probs=212.8

Q ss_pred             cccchhHHHHHHHHhccccccc-cCCC----CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVK-EYLP----IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR  122 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~-~y~~----~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~  122 (407)
                      +.++.+++++.+.+.+.....+ .|..    .....++++.+++++ +.     +++++++  |+|+++++.+++..+..
T Consensus        11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~-----~~~~v~~--~~g~t~a~~~~~~~l~~   82 (382)
T 4eb5_A           11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLV-NG-----GGGTVVF--TSGATEANNLAIIGYAM   82 (382)
T ss_dssp             CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHH-TC-----TTEEEEE--ESSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHh-CC-----CCCeEEE--cCchHHHHHHHHHHHHh
Confidence            4456666666666641001111 1422    235788899999988 42     2468999  99999999999644421


Q ss_pred             --hcCCCeEEecCCCCCChHHHHh---hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCH
Q 015435          123 --HYHQLTIYIPQPTWGNHPKVFT---LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTL  197 (407)
Q Consensus       123 --~~~gd~Vi~~~p~y~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~  197 (407)
                        ..+||+|++++|+|+.+...+.   ..|++++.++++  .++.+|++++++.+.  ++++++++ ++|+||||.+++ 
T Consensus        83 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~-  156 (382)
T 4eb5_A           83 RNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLR--DDTILVSV-QHANNEIGTIQP-  156 (382)
T ss_dssp             HHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBC--TTSCBCHHHHHHHCC--TTEEEEEC-CSBCTTTCBBCC-
T ss_pred             hccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccC--CCCccCHHHHHHHhc--CCCeEEEE-eccCCCccccCC-
Confidence              1689999999999998877665   479999999983  356789999999987  44555555 999999999987 


Q ss_pred             HHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHH
Q 015435          198 EQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASR  277 (407)
Q Consensus       198 ~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~  277 (407)
                        +++|+++|++||++ |+|++|.. .....     .+..+    +..++++|+||.+|++|  +|++  +++++.   .
T Consensus       157 --l~~i~~l~~~~~~~-i~D~a~~~-g~~~~-----~~~~~----~~di~~~s~sK~~g~~g--~G~~--~~~~~~---~  216 (382)
T 4eb5_A          157 --VEEISEVLAGKAAL-HIDATASV-GQIEV-----DVEKI----GADMLTISSNDIYGPKG--VGAL--WIRKEA---K  216 (382)
T ss_dssp             --HHHHHHHHTTSSEE-EEECTTTB-TTBCC-----CHHHH----TCSEEEEETGGGTCCSS--CEEE--EEETTC---C
T ss_pred             --HHHHHHHHHHCCCE-EEEcchhc-CCccc-----Ccccc----CCCEEEeehHHhcCCCc--eEEE--EEcccc---c
Confidence              67888889999999 99999872 21111     12111    34688999999887656  6888  566431   1


Q ss_pred             HHHHHhh---hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC---
Q 015435          278 VESQLKL---VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ---  351 (407)
Q Consensus       278 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---  351 (407)
                      +...+..   .......+++...+.++..+++..      .+.+++.+++++++++++.+.|++++.   +.+..+.   
T Consensus       217 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~  287 (382)
T 4eb5_A          217 LQPVILGGGQENGLRSGSENVPSIVGFGKAAEIT------AMEWREEAERLRRLRDRIIDNVLKIEE---SYLNGHPEKR  287 (382)
T ss_dssp             CCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHTTSTT---EEECSCSSSB
T ss_pred             cCceecCCCccccccCCCccHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHhhCCC---eEEeCCcccC
Confidence            1111100   011122345555555555555422      234677888999999999999988632   5555443   


Q ss_pred             -ceeEEe--cCCCHHHHHHhHhhccEEEcCC-------------------------C--eEEecC-CCCCChhHHHHHHH
Q 015435          352 -IGMFTF--TGLNSEQVAFMTKEYHIYMTSD-------------------------G--RISMAG-LSSKTVPHLTDAIH  400 (407)
Q Consensus       352 -~~~~~~--~~~~~~~~~~~l~~~gi~~~~g-------------------------g--Ris~~~-~~~e~i~~~~~~l~  400 (407)
                       ++++.+  .+.+.+.+.+.|.++||.+.+|                         +  ||+++. .+++++++++++|+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (382)
T 4eb5_A          288 LPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLP  367 (382)
T ss_dssp             CTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHH
Confidence             334332  2456666666666789998764                         2  899874 47899999999999


Q ss_pred             HHHHhh
Q 015435          401 AAVTRM  406 (407)
Q Consensus       401 ~~l~~~  406 (407)
                      ++++++
T Consensus       368 ~~~~~~  373 (382)
T 4eb5_A          368 GVIERL  373 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.95  E-value=5.7e-27  Score=223.94  Aligned_cols=327  Identities=14%  Similarity=0.050  Sum_probs=218.1

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccc-cccCC----CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR-VKEYL----PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~----~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      +.+.|..+..    + +.++.+.+++.+.+...... ...|.    ...+..++++.+++++ +.     ++++|++  |
T Consensus        26 ~~~~ld~~~~----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~-----~~~~v~~--~   92 (406)
T 3cai_A           26 GWVHFDAPAG----M-LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV-NA-----DPGGVVL--G   92 (406)
T ss_dssp             SCEECBGGGC----C-CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH-TC-----CGGGEEE--E
T ss_pred             CeEEEeCCCc----C-CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh-CC-----CCCeEEE--e
Confidence            4666666652    2 55666777766666411101 11232    2346788999999998 43     2478999  9


Q ss_pred             CCcccHHHHHHHHHH-hhcCCCeEEecCCCCCChHHHHhh----cCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEE
Q 015435          107 LSGTGSLRVGAEFLA-RHYHQLTIYIPQPTWGNHPKVFTL----AGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIV  181 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~-~~~~gd~Vi~~~p~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v  181 (407)
                      +|+|+++.+++..+. .+.+||+|+++.|+|..+...+..    .|.+++.++++ +.++.+|++++++.+.  ++++++
T Consensus        93 ~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~d~~~l~~~l~--~~~~~v  169 (406)
T 3cai_A           93 ADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVD-IETGELPTWQWESLIS--KSTRLV  169 (406)
T ss_dssp             SCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCC-TTTCCCCGGGHHHHCC--TTEEEE
T ss_pred             CChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecC-cccCCcCHHHHHHHhC--CCceEE
Confidence            999999999843221 257999999999999987766554    79999999983 3456789999999986  456666


Q ss_pred             EEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435          182 LLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER  261 (407)
Q Consensus       182 ~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  261 (407)
                      ++ ++|+||||.+++   +++|+++|+++|+++|+|++|..... ..  +   +..+    +..+++.|+||.+| ++  
T Consensus       170 ~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~-~~--~---~~~~----~~d~~~~s~~K~~g-~~--  232 (406)
T 3cai_A          170 AV-NSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPYR-LL--D---IRET----DADVVTVNAHAWGG-PP--  232 (406)
T ss_dssp             EE-ESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTTC-CC--C---HHHH----CCSEEEEEGGGGTS-CS--
T ss_pred             EE-eCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCCC-CC--C---chhc----CCCEEEeehhhhcC-CC--
Confidence            66 899999999887   67888889999999999999873221 11  1   1111    35688999999876 44  


Q ss_pred             cc-eeEEeecChhhHHHHHHHHhhhhh---------cccCCCChhHHHHHHHHhcChh---------hHHhHHHHHHHHH
Q 015435          262 VG-ALSIVCKTEDVASRVESQLKLVIR---------PMYSSPPIHGASIVATILKDST---------MYKEWTLELKAMA  322 (407)
Q Consensus       262 ~G-~~~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~  322 (407)
                      +| ++  +++ +    .+.+.+.....         ....+++...+.++..+++...         ...+|.+++++.+
T Consensus       233 ~G~~~--~~~-~----~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~  305 (406)
T 3cai_A          233 IGAMV--FRD-P----SVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSAD  305 (406)
T ss_dssp             CEEEE--ESC-H----HHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHH
T ss_pred             cCeEE--EEe-h----HHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Confidence            88 88  465 3    34444433211         1123455555544444443111         1123444678888


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccC---CceeEEec--CCCHHHHHHhHhhccEEEcCC---------------C--
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIK---QIGMFTFT--GLNSEQVAFMTKEYHIYMTSD---------------G--  380 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~gi~~~~g---------------g--  380 (407)
                      ++++++++++.+.|++.+.   +.+..+   .++++.+.  +.+.+.+.+.|.++||.+.+|               +  
T Consensus       306 ~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~i  382 (406)
T 3cai_A          306 AYLNRVFDYLMVSLRSLPL---VMLIGRPEAQIPVVSFAVHKVPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAV  382 (406)
T ss_dssp             HHHHHHHHHHHHHHHTCTT---EEECCCCSSBCSEEEEEETTBCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCE
T ss_pred             HHHHHHHHHHHHHHhcCCC---eEEcCCccccCCEEEEEECCcCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeE
Confidence            9999999999999988632   555444   24433221  345666666666789998753               3  


Q ss_pred             eEEecC-CCCCChhHHHHHHHH
Q 015435          381 RISMAG-LSSKTVPHLTDAIHA  401 (407)
Q Consensus       381 Ris~~~-~~~e~i~~~~~~l~~  401 (407)
                      ||+++. .+++++++++++|++
T Consensus       383 Ris~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          383 TVGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHT
T ss_pred             EEEeecCCCHHHHHHHHHHHHH
Confidence            898875 367889999988875

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.95  E-value=1.4e-27  Score=231.38  Aligned_cols=342  Identities=11%  Similarity=0.031  Sum_probs=213.9

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++++|||+.|.+..+.| +.++.+++++.+++. .......+.+.....++++.+++++ +.     ..+ |++  |+
T Consensus        46 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~A~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~-~~-----~~~-v~~--~~  114 (452)
T 3n5m_A           46 IQGKRYLDGMSGLWCVNSG-YGRKELAEAAYKQLQ-TLSYFPMSQSHEPAIKLAEKLNEWL-GG-----EYV-IFF--SN  114 (452)
T ss_dssp             TTCCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHT-TCCCCCTTSEEHHHHHHHHHHHHHH-TS-----CEE-EEE--ES
T ss_pred             CCCCEEEECCcchhhccCC-CCCHHHHHHHHHHHH-hcCCcccccCCHHHHHHHHHHHHhC-CC-----Cce-EEE--eC
Confidence            4568999999997655677 567788888888775 1111111122333455666666655 21     124 888  99


Q ss_pred             CcccHHHHHHHHHHhh---c---CCCeEEecCCCCCChHHHHhhcCce-------------eeEEEeecCCCCCc-C---
Q 015435          108 SGTGSLRVGAEFLARH---Y---HQLTIYIPQPTWGNHPKVFTLAGLS-------------VKTYRYYDPATRGL-N---  164 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~---~---~gd~Vi~~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~-d---  164 (407)
                      ||++|++.+++++...   .   ++++|++.+|+|+++.......+..             +..++..+...... |   
T Consensus       115 ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (452)
T 3n5m_A          115 SGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIEREN  194 (452)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSC
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchh
Confidence            9999999997666433   4   6789999999999887655544332             22333211100111 1   


Q ss_pred             ------hhhHHHHHH-cCCCCcEEEEecCC-CCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH
Q 015435          165 ------FQGLLEDLR-AAPSGAIVLLHACA-HNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV  235 (407)
Q Consensus       165 ------~~~l~~~i~-~~~~~~~v~i~~~p-~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~  235 (407)
                            +++|++.+. ..+.+..++++.++ +| ||.+. +.+++++|+++|++||++||+||+|.+|+..+.   ....
T Consensus       195 ~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~~~  270 (452)
T 3n5m_A          195 IYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK---AFGF  270 (452)
T ss_dssp             GGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG
T ss_pred             hHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc---cchh
Confidence                  788998886 22233344443666 89 99765 888899999999999999999999999876542   1111


Q ss_pred             HHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhh------hhhcccCCCChhHHHHHHHHhcCh
Q 015435          236 RMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKL------VIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       236 ~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                          ...+...-+.+|||.++. | +|+||+  +++     +++.+.+..      .....+++.+++++.++.++++..
T Consensus       271 ----~~~~~~~di~t~sK~l~~-G~~~ig~~--~~~-----~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~  338 (452)
T 3n5m_A          271 ----MNYDVKPDIITMAKGITS-AYLPLSAT--AVK-----REIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEII  338 (452)
T ss_dssp             ----GGTTCCCSEEEECGGGGT-TSSCCEEE--EEE-----HHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHH
T ss_pred             ----hhcCCCCCEEeecccccC-CCcceEEE--EEC-----HHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHH
Confidence                111111113368999995 9 999999  566     556555532      122345578888999888887633


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccccCCceeEEec---C-C-----CH---HHHHHhHhhccE
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFT---G-L-----NS---EQVAFMTKEYHI  374 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~---~-~-----~~---~~~~~~l~~~gi  374 (407)
                      .      +  +...++++++.+++.+.|+++  ..+ .+....+.+.++.+.   . .     +.   ..+...+.++||
T Consensus       339 ~------~--~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  409 (452)
T 3n5m_A          339 E------N--ENLIERSAQMGSLLLEQLKEEIGEHP-LVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGL  409 (452)
T ss_dssp             H------H--TTHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTE
T ss_pred             H------h--ccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCc
Confidence            1      1  233455555666666665543  111 133444555544322   1 0     11   234444555899


Q ss_pred             EEcCCC----------eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          375 YMTSDG----------RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       375 ~~~~gg----------Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+.|++          ||+++. .+++++++++++|++++++
T Consensus       410 ~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          410 IIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             ECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             EEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            998752          776443 4889999999999999865

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.95  E-value=1.7e-27  Score=229.75  Aligned_cols=331  Identities=13%  Similarity=0.041  Sum_probs=212.9

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++.+|||+.|.+..+.| +.++.+++++.+++.  ......| +.....++++.+++++ +      ..+++++  |+
T Consensus        53 ~~g~~~lD~~~~~~~~~lG-~~~~~v~~a~~~~~~--~~~~~~~-~~~~~~~l~~~la~~~-~------~~~~v~~--~~  119 (434)
T 2epj_A           53 VDGARIVDLVLAYGPLILG-HKHPRVLEAVEEALA--RGWLYGA-PGEAEVLLAEKILGYV-K------RGGMIRF--VN  119 (434)
T ss_dssp             TTCCEEEESSGGGTTCTTC-BTCHHHHHHHHHHHH--TCSCCSS-CCHHHHHHHHHHHHHH-C------TTCEEEE--ES
T ss_pred             CCCCEEEEcccchhcccCC-CCCHHHHHHHHHHHH--hCCCCCC-CCHHHHHHHHHHHHhC-C------CCCEEEE--eC
Confidence            3567899999997543455 456677777777775  2222233 3334566777777766 2      1378999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-h-------------cCc------eeeEEEeecCCCCCcChhh
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-L-------------AGL------SVKTYRYYDPATRGLNFQG  167 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~-------------~G~------~~~~v~~~~~~~~~~d~~~  167 (407)
                      ||++|+++++++...+.+++.|++.+|+|+++..... .             .|+      ++..++.       .|+++
T Consensus       120 sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~  192 (434)
T 2epj_A          120 SGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEA  192 (434)
T ss_dssp             SHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHH
T ss_pred             CHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHH
Confidence            9999999997654445577899999999988655332 1             232      2333432       38899


Q ss_pred             HHHHHHcCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435          168 LLEDLRAAPSGAIVLLHACAHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL  246 (407)
Q Consensus       168 l~~~i~~~~~~~~v~i~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  246 (407)
                      +++.+.+.+.+..++++...+||||.+. +++.+++|.++|++||++||+||+|.++ ..+   .......+ ....+  
T Consensus       193 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g---~~~~~~~~-~~~~d--  265 (434)
T 2epj_A          193 LERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLG---LEGAQGYF-NIEGD--  265 (434)
T ss_dssp             HHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSS---TTHHHHHH-TCCCS--
T ss_pred             HHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCC---cchhhHHh-CCCCC--
Confidence            9998874222333344244456799865 7999999999999999999999999987 322   12222222 11222  


Q ss_pred             EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh---hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI---RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                       +.||||.++. |+|+||+  +++     +++.+.+....   ...+++.+++++.++..+++...      +  ++..+
T Consensus       266 -i~s~sK~l~~-G~~~G~v--~~~-----~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~------~--~~~~~  328 (434)
T 2epj_A          266 -IIVLGKIIGG-GFPVGAV--AGS-----REVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALE------E--EPVYS  328 (434)
T ss_dssp             -EEEEEGGGGT-TSSCEEE--EEC-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHH------H--SCHHH
T ss_pred             -eeeecchhcC-Ccceeee--eec-----HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH------h--cCHHH
Confidence             3488999995 9999999  566     44555444311   12334677888888877775321      1  24456


Q ss_pred             HHHHHHHHHHHHHHhc----CCCCCcccccCCceeEEecCCC-----------------HHHHHHhHhhccEEEcCCC--
Q 015435          324 RIISMRQQLFDALSAR----GTPGDWSHIIKQIGMFTFTGLN-----------------SEQVAFMTKEYHIYMTSDG--  380 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~~~~gg--  380 (407)
                      +++++++++.+.|+++    +.   .....+.+. +.|+.+.                 .+.+...|.++||.+.+++  
T Consensus       329 ~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~  404 (434)
T 2epj_A          329 VSREAAKALEEAASEVLDRTGL---PYTINRVES-MMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLE  404 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC---CEEEEEETT-EEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTS
T ss_pred             HHHHHHHHHHHHHHHHHhhCCC---cEEEEEeee-EEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCC
Confidence            6667777777777654    42   112333444 4444321                 2234444456899999986  


Q ss_pred             eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |+.+.. .+++++++++++|+++++++
T Consensus       405 ~~~~~~~~t~e~i~~~l~~l~~~l~~~  431 (434)
T 2epj_A          405 AVFTGLPHQGEALEIAVEGLRSSLKTV  431 (434)
T ss_dssp             CEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence            554432 48899999999999998753

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.95  E-value=6.5e-28  Score=233.52  Aligned_cols=342  Identities=10%  Similarity=0.040  Sum_probs=211.8

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++++|||+.|.+..+.| +.++.+++++.+++.  ..  ..|.+..+..+.+.++++.+...... ...+++++  |+
T Consensus        58 ~~g~~ylD~~~~~~~~~lG-h~~p~v~~A~~~~~~--~~--~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~~v~~--~~  129 (451)
T 3oks_A           58 VDGNRLIDLGSGIAVTTVG-NSAPKVVEAVRSQVG--DF--THTCFMVTPYEGYVAVCEQLNRLTPV-RGDKRSAL--FN  129 (451)
T ss_dssp             TTSCEEEESSHHHHTCTTC-TTCHHHHHHHHHHHT--TC--SCCTTTTSCCHHHHHHHHHHHHHSSC-CSSEEEEE--ES
T ss_pred             CCCCEEEEcCCCccccccC-CCCHHHHHHHHHHHH--hc--ccccCCccCCHHHHHHHHHHHHhCCc-CCCCEEEE--eC
Confidence            3568899999997666677 567788888888875  21  22433334344444444444221110 01368999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc--------------eeeEEEeecC--------CCCC---
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL--------------SVKTYRYYDP--------ATRG---  162 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~--------------~~~~v~~~~~--------~~~~---  162 (407)
                      ||++|++.++++......++.|++.+++|+++.......+.              .+..++...+        +..+   
T Consensus       130 sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  209 (451)
T 3oks_A          130 SGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGE  209 (451)
T ss_dssp             SHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHH
T ss_pred             cHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhH
Confidence            99999999976654444568999999999987765543322              3455554200        0001   


Q ss_pred             cChhhHHHHHHc--CCCCcEEEEecCCCCCCCC--CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH
Q 015435          163 LNFQGLLEDLRA--APSGAIVLLHACAHNPTGV--DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF  238 (407)
Q Consensus       163 ~d~~~l~~~i~~--~~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~  238 (407)
                      .+++.+++.+.+  .+.+.++++ ..|.|++|.  ..+.+.+++|+++|++||++||+||+|.+|++.+.   ......+
T Consensus       210 ~~~~~~~~~l~~~~~~~~~aavi-~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~~  285 (451)
T 3oks_A          210 LAAKRAITVIDKQIGADNLAAVV-IEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA---MFACEHE  285 (451)
T ss_dssp             HHHHHHHHHHHHHTCGGGEEEEE-ECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEE-EcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc---chhhhhc
Confidence            124444455542  123444455 566676653  35777899999999999999999999998876542   1111111


Q ss_pred             HHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435          239 VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLEL  318 (407)
Q Consensus       239 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  318 (407)
                       ....++   .||||.++. |+|+||+  +++     +++.+.+.......+++.+++++.++.++++...      +  
T Consensus       286 -~~~pdi---~t~sK~l~~-G~~iG~v--~~~-----~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~--  345 (451)
T 3oks_A          286 -GIDPDL---IVTAKGIAG-GLPLSAV--TGR-----AEIMDSPHVSGLGGTYGGNPIACAAALATIETIE------S--  345 (451)
T ss_dssp             -TCCCSE---EEECGGGGT-TSSCEEE--EEE-----HHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHH------H--
T ss_pred             -CCCCCe---eeehhhhhC-CcceEEE--EEC-----HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHh------h--
Confidence             111222   389999985 9999999  566     5566656554455566888999998888876321      1  


Q ss_pred             HHHHHHHHHHHHHHHHHHHh----cCCCCCcccccCCceeEEecCC--------C---HHHHHHhHhhccEEEcCCC---
Q 015435          319 KAMADRIISMRQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGL--------N---SEQVAFMTKEYHIYMTSDG---  380 (407)
Q Consensus       319 ~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~~~~gg---  380 (407)
                      +...++++++.+++.+.|++    .+.   +....+.|. +.++.+        +   ...+.+.+.++||.+.|++   
T Consensus       346 ~~~~~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~  421 (451)
T 3oks_A          346 EGLVARAQQIEKIMKDRLGRLQAEDDR---IGDVRGRGA-MIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYG  421 (451)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCTT---EEEEEEETT-EEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhCCC---eEEEEEeeE-EEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCC
Confidence            12334444455555554443    331   333344444 443322        1   2334445556899998864   


Q ss_pred             ---eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          381 ---RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       381 ---Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                         ||+++. .+++++++++++|++++++
T Consensus       422 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          422 NVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence               776553 4789999999999999864

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.95  E-value=2.7e-27  Score=223.98  Aligned_cols=314  Identities=13%  Similarity=0.102  Sum_probs=209.9

Q ss_pred             cccchhHHHHHHHHhccccccc-cCC----CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVK-EYL----PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR  122 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~-~y~----~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~  122 (407)
                      +.++.+++++.+.+.+...... .|.    ......++++.+++++ +.     +++++++  |+|+++++.+++..+  
T Consensus        11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~-----~~~~i~~--~~g~~~a~~~~~~~~--   80 (382)
T 4hvk_A           11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLV-NG-----GGGTVVF--TSGATEANNLAIIGY--   80 (382)
T ss_dssp             CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHT-TC-----TTEEEEE--ESSHHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHc-CC-----CcCeEEE--ECCchHHHHHHHHHh--
Confidence            4455666666666641100000 111    1123457778888876 42     3468999  999999999985433  


Q ss_pred             h----cCCCeEEecCCCCCChHHHHhh---cCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCC
Q 015435          123 H----YHQLTIYIPQPTWGNHPKVFTL---AGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDP  195 (407)
Q Consensus       123 ~----~~gd~Vi~~~p~y~~~~~~~~~---~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~  195 (407)
                      .    .+||+|+++.++|+.+...+..   .|++++.++.+  .++.+|++++++.+.  ++++++++ ++|+||||.+.
T Consensus        81 ~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~  155 (382)
T 4hvk_A           81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLR--DDTILVSV-QHANNEIGTIQ  155 (382)
T ss_dssp             HHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBC--TTSCBCHHHHHHHCC--TTEEEEEC-CSBCTTTCBBC
T ss_pred             hhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccC--CCCCcCHHHHHHHhc--cCceEEEE-ECCCCCceeeC
Confidence            4    7999999999999988776554   69999999983  456799999999987  45555555 99999999988


Q ss_pred             CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH
Q 015435          196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA  275 (407)
Q Consensus       196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~  275 (407)
                      +   +++|+++|++||+ +|+|++|...... .  +   ...    .+..+++.|+||.+|.+|  +|++  +++++.  
T Consensus       156 ~---~~~i~~l~~~~~~-li~D~a~~~~~~~-~--~---~~~----~~~d~~~~s~~K~~g~~g--~g~~--~~~~~~--  215 (382)
T 4hvk_A          156 P---VEEISEVLAGKAA-LHIDATASVGQIE-V--D---VEK----IGADMLTISSNDIYGPKG--VGAL--WIRKEA--  215 (382)
T ss_dssp             C---HHHHHHHHSSSSE-EEEECTTTBTTBC-C--C---HHH----HTCSEEEEESGGGTSCTT--CEEE--EEETTC--
T ss_pred             C---HHHHHHHHHHcCE-EEEEhHHhcCCCC-C--C---chh----cCCCEEEEeHHHhcCCCc--eEEE--EEcCcc--
Confidence            7   6688888999999 9999987633221 1  1   111    134688999999877555  6777  344321  


Q ss_pred             HHHHHHHhh---hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCc
Q 015435          276 SRVESQLKL---VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQI  352 (407)
Q Consensus       276 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  352 (407)
                       .+...+..   .......+++...+.++..+++..      .+.+++.+++++++++++.+.|++++.   +.+..+.+
T Consensus       216 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~  285 (382)
T 4hvk_A          216 -KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEIT------AMEWREEAERLRRLRDRIIDNVLKIEE---SYLNGHPE  285 (382)
T ss_dssp             -CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHTTSTT---EEECSCSS
T ss_pred             -CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHhcCCC---eEEeCCcc
Confidence             11110000   011112344556666665555422      245778889999999999999987642   55544332


Q ss_pred             ----eeEEe--cCCCHHHHHHhHhhccEEEcCC-------------------------C--eEEecC-CCCCChhHHHHH
Q 015435          353 ----GMFTF--TGLNSEQVAFMTKEYHIYMTSD-------------------------G--RISMAG-LSSKTVPHLTDA  398 (407)
Q Consensus       353 ----~~~~~--~~~~~~~~~~~l~~~gi~~~~g-------------------------g--Ris~~~-~~~e~i~~~~~~  398 (407)
                          +++.+  .+.+.+.+.+.|.++||.+.+|                         +  ||+++. .+++++++++++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~  365 (382)
T 4hvk_A          286 KRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEV  365 (382)
T ss_dssp             SBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHH
T ss_pred             ccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHH
Confidence                23322  2556777777777789999864                         2  888874 467899999999


Q ss_pred             HHHHHHhh
Q 015435          399 IHAAVTRM  406 (407)
Q Consensus       399 l~~~l~~~  406 (407)
                      |+++++++
T Consensus       366 l~~~~~~~  373 (382)
T 4hvk_A          366 LPGVIERL  373 (382)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.95  E-value=1e-27  Score=232.96  Aligned_cols=344  Identities=11%  Similarity=0.019  Sum_probs=219.2

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCC----cHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVG----LVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g----~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      ..++++|||+.|.+..+.| ..++.+++++.+++.  .. .+.|....+    ..++++.+++++ +     ...++|++
T Consensus        52 ~~G~~ylD~~s~~~~~~lG-h~~p~v~~A~~~~~~--~~-~~~~~~~~~~~~~~~~lae~l~~~~-~-----~~~~~v~~  121 (472)
T 3hmu_A           52 SEGEEILDAMAGLWCVNIG-YGRDELAEVAARQMR--EL-PYYNTFFKTTHVPAIALAQKLAELA-P-----GDLNHVFF  121 (472)
T ss_dssp             TTCCEEECTTHHHHTCTTC-BCCHHHHHHHHHHHH--HC-SCCCSSSSEECHHHHHHHHHHHHHS-C-----TTEEEEEE
T ss_pred             CCCCEEEECCCchhhccCC-CCCHHHHHHHHHHHH--hc-cccccccccCCHHHHHHHHHHHHhC-C-----CCCCEEEE
Confidence            4578999999997666677 567788888888876  21 112322222    344555555544 2     12378999


Q ss_pred             eecCCcccHHHHHHHHHHhh------cCCCeEEecCCCCCChHHHHhhcCc------------eeeEEEeec--CCCCCc
Q 015435          104 VQCLSGTGSLRVGAEFLARH------YHQLTIYIPQPTWGNHPKVFTLAGL------------SVKTYRYYD--PATRGL  163 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~------~~gd~Vi~~~p~y~~~~~~~~~~G~------------~~~~v~~~~--~~~~~~  163 (407)
                        ++||++|++.+++++...      .+++.|++.+++|.++.......+.            .++.++...  ..+...
T Consensus       122 --~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~  199 (472)
T 3hmu_A          122 --AGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDM  199 (472)
T ss_dssp             --ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTC
T ss_pred             --eCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCccc
Confidence              999999999998776543      2467899999999988766554433            233444310  000012


Q ss_pred             C--------hhhHHHHHHcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435          164 N--------FQGLLEDLRAA-PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ  233 (407)
Q Consensus       164 d--------~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~  233 (407)
                      +        +++|++.+.+. +.+.+++++.+++|++|.+ .+++.+++|+++|++||++||+||+|.+|+..+.   .+
T Consensus       200 ~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~---~~  276 (472)
T 3hmu_A          200 DPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN---WF  276 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SC
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc---cc
Confidence            3        77888888632 2333444435567777775 4899999999999999999999999999987652   22


Q ss_pred             HHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHh--hhhhcccCCCChhHHHHHHHHhcChhhH
Q 015435          234 SVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLK--LVIRPMYSSPPIHGASIVATILKDSTMY  311 (407)
Q Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~  311 (407)
                      ....+ ....+++   +|||.++.+|+|+|++  +++     +++.+.+.  .+....+++.+++++.++.++|+...  
T Consensus       277 a~~~~-~v~pdi~---t~sK~l~gg~~plG~v--~~~-----~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~--  343 (472)
T 3hmu_A          277 GTQTM-GIRPHIM---TIAKGLSSGYAPIGGS--IVC-----DEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILE--  343 (472)
T ss_dssp             HHHHH-TCCCSEE---EECGGGTTTSSCCEEE--EEE-----HHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHH--
T ss_pred             hhHHh-CCCCcee---eechhhhcCCcceEEE--EEC-----HHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHH--
Confidence            33222 2223333   5889998656999999  565     44444442  11223355788889998888876321  


Q ss_pred             HhHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCcccccCCceeEEec-CCC--------------HHHHHHhHhhccEE
Q 015435          312 KEWTLELKAMADRII-SMRQQLFDALSARGTPGDWSHIIKQIGMFTFT-GLN--------------SEQVAFMTKEYHIY  375 (407)
Q Consensus       312 ~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~l~~~gi~  375 (407)
                          +  +...++++ ++.+++.+.|+++.....+..+.+.|.++.+. .-+              ...+.+.|.++||.
T Consensus       344 ----~--~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~  417 (472)
T 3hmu_A          344 ----E--ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLI  417 (472)
T ss_dssp             ----H--TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBC
T ss_pred             ----H--hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcE
Confidence                1  24456666 67777777776653100133444555554432 111              23344445558999


Q ss_pred             EcCCC---eEEec-CCCCCChhHHHHHHHHHHHh
Q 015435          376 MTSDG---RISMA-GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       376 ~~~gg---Ris~~-~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +.++|   ||+.. ..+++++++++++|++++++
T Consensus       418 v~~~g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  451 (472)
T 3hmu_A          418 MRHVGDRMIISPPLVITPAEIDEMFVRIRKSLDE  451 (472)
T ss_dssp             CEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            99876   77633 24889999999999998865

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.95  E-value=1.1e-27  Score=231.82  Aligned_cols=343  Identities=9%  Similarity=-0.000  Sum_probs=203.0

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++++||++.|.+..+.| ..++.+++++.+++.  ..  ..|.+..+..+.++++++++.....  ...++|++  |+
T Consensus        41 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~A~~~~~~--~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~  111 (448)
T 3dod_A           41 INGKEYYDGFSSVWLNVHG-HRKKELDDAIKKQLG--KI--AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFY--SD  111 (448)
T ss_dssp             TTSCEEEETTHHHHTCSSC-BSCHHHHHHHHHHHT--TC--SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEE--ES
T ss_pred             CCCCEEEECCcchhhccCC-CCCHHHHHHHHHHHH--hc--cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eC
Confidence            4568999999997766677 557788888888775  21  1232333444455555555532221  12378999  99


Q ss_pred             CcccHHHHHHHHHHhh--cC----CCeEEecCCCCCChHHHHhhcCc-------------eeeEEEeecCCCCCc-----
Q 015435          108 SGTGSLRVGAEFLARH--YH----QLTIYIPQPTWGNHPKVFTLAGL-------------SVKTYRYYDPATRGL-----  163 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~--~~----gd~Vi~~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~-----  163 (407)
                      ||++|++.+++++...  .+    +|+|++++|+|+++.......+.             .+..++.  +..+..     
T Consensus       112 sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  189 (448)
T 3dod_A          112 SGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPI--PYVYRSESGDP  189 (448)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECC--CCCTTSSSCCH
T ss_pred             chHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCC--CccccCCccch
Confidence            9999999997666443  03    49999999999877654443322             2333433  221211     


Q ss_pred             ------ChhhHHHHHHcCCC-CcEEEEecCCC-CCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435          164 ------NFQGLLEDLRAAPS-GAIVLLHACAH-NPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS  234 (407)
Q Consensus       164 ------d~~~l~~~i~~~~~-~~~v~i~~~p~-NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~  234 (407)
                            |+++|++.+.+.+. ++++++ .+.+ |++|. +++++++++|+++|++||++||+||+|.+|+..+.   ...
T Consensus       190 ~~~~~~d~~~le~~l~~~~~~~a~vi~-ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~---~~a  265 (448)
T 3dod_A          190 DECRDQCLRELAQLLEEHHEEIAALSI-ESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK---MFA  265 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGEEEEEE-ESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSG
T ss_pred             hhhhHHHHHHHHHHHHhCCCCEEEEEE-eCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---hhh
Confidence                  47889988863223 344444 4445 77775 47888899999999999999999999998876542   111


Q ss_pred             HHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhh-------hhhcccCCCChhHHHHHHHHhc
Q 015435          235 VRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKL-------VIRPMYSSPPIHGASIVATILK  306 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~  306 (407)
                      ...+ ....+   +.+|||.++ +| +|+||+  +++     +++.+.+..       .....+++.+++++.++.++++
T Consensus       266 ~~~~-~~~~d---i~t~sK~l~-~G~~~ig~v--~~~-----~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~  333 (448)
T 3dod_A          266 CEHE-NVQPD---LMAAGKGIT-GGYLPIAVT--FAT-----EDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLA  333 (448)
T ss_dssp             GGGG-TCCCS---EEEECGGGG-TTSSCCEEE--EEE-----HHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHH
T ss_pred             hhhc-CCCCC---EEEeccccc-CCcCceEEE--EEC-----HHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHH
Confidence            1111 11122   336899998 59 599999  566     556665654       3333455778888988888876


Q ss_pred             ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC--C-------------HHHHHHhHhh
Q 015435          307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL--N-------------SEQVAFMTKE  371 (407)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~~~~l~~  371 (407)
                      ...      +  +.+.++++++.+++.+.|+++.....+....+.|. +.|+.+  +             ...+...+.+
T Consensus       334 ~~~------~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  404 (448)
T 3dod_A          334 LFE------S--ENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGF-MCGAELVRSKETKEPYPADRRIGYKVSLKMRE  404 (448)
T ss_dssp             HHH------H--TTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETT-EEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH
T ss_pred             HHh------c--ccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeE-EEEEEEccCcccccccchhhHHHHHHHHHHHH
Confidence            331      1  22334444455555555544211001223333344 444322  1             1334444445


Q ss_pred             ccEEEcCCC---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          372 YHIYMTSDG---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       372 ~gi~~~~gg---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +||.+.|+|   ||+++. .+++++++++++|+++++++
T Consensus       405 ~Gv~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  443 (448)
T 3dod_A          405 LGMLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEV  443 (448)
T ss_dssp             TTEECCEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            799999976   775432 48899999999999998753

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.95  E-value=4.5e-27  Score=224.23  Aligned_cols=317  Identities=16%  Similarity=0.104  Sum_probs=218.4

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      .++|||+.|.+      +.++.+.+++.+.+.  .   ..|.+..+..++++++++++ +.       +++++  ++||+
T Consensus        30 ~~~id~~~~~~------~~~~~v~~a~~~~~~--~---~~y~~~~~~~~l~~~la~~~-~~-------~~~v~--~~~Gt   88 (399)
T 2oga_A           30 VPFLDLKAAYE------ELRAETDAAIARVLD--S---GRYLLGPELEGFEAEFAAYC-ET-------DHAVG--VNSGM   88 (399)
T ss_dssp             BCSCCHHHHHH------HTHHHHHHHHHHHHH--H---TCCSSSHHHHHHHHHHHHHT-TS-------SEEEE--ESCHH
T ss_pred             CcccccCcCCC------CCCHHHHHHHHHHHh--c---CCCCCchhHHHHHHHHHHHH-CC-------CeEEE--ecCHH
Confidence            57899998875      334555555555554  1   25766678999999999988 43       36777  88889


Q ss_pred             cHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          111 GSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       111 ~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      +++.+++  ... +.+||+|+++.|+|..+...++..|.+++.++++ ++++.+|++++++.+.  +++++++    ++|
T Consensus        89 ~a~~~~l--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~--~~~~~v~----~~n  159 (399)
T 2oga_A           89 DALQLAL--RGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPH-EDHPTLDPLLVEKAIT--PRTRALL----PVH  159 (399)
T ss_dssp             HHHHHHH--HHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-SSSSSBCHHHHHHHCC--TTEEEEC----CBC
T ss_pred             HHHHHHH--HHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecC-CCCCCcCHHHHHHhcC--CCCeEEE----EeC
Confidence            9999984  333 5789999999999999999999999999999984 4457899999999986  4444433    478


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeecccccccc-CCCCCchhHHHHHHHHcCCcEEEEEec--CccccccCCCcceeE
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFA-SGSLDADAQSVRMFVADGGECLVAQSY--AKNMGLYGERVGALS  266 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~r~G~~~  266 (407)
                      |||.+.+   +++|+++|+++|+++|+|++|..+. +++   ..     +..  -..+++.|+  ||.++.+| |+|++ 
T Consensus       160 ~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~---~~-----~~~--~~di~~~S~~~sK~~~~~G-~~g~~-  224 (399)
T 2oga_A          160 LYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRG---RR-----IGA--GSSVAAFSFYPGKNLGCFG-DGGAV-  224 (399)
T ss_dssp             GGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETT---EE-----TTC--TTCEEEEECCTTSSSCCSS-CCEEE-
T ss_pred             CcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCC---ee-----ccc--ccCEEEEeCCCCccCCcCC-ceEEE-
Confidence            9999765   7888888999999999999997653 221   11     111  124788888  79999779 99998 


Q ss_pred             EeecChhhHHHHHHHHhhhhh--------cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015435          267 IVCKTEDVASRVESQLKLVIR--------PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA  338 (407)
Q Consensus       267 ~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  338 (407)
                       +++++++.+++.........        ......+.+.+.++...++..          +...++.+++++++.+.|++
T Consensus       225 -~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~----------~~~~~~~~~~~~~l~~~L~~  293 (399)
T 2oga_A          225 -VTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHL----------DSWNGRRSALAAEYLSGLAG  293 (399)
T ss_dssp             -EESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTH----------HHHHHHHHHHHHHHHHHTTT
T ss_pred             -EeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhcc
Confidence             67777766655442211100        011234555555555554432          23445556677888888877


Q ss_pred             cCCCCCcccc-cCCceeEEec-----CCCHHHHHHhHhhccEEEcCC-----------------------------C--e
Q 015435          339 RGTPGDWSHI-IKQIGMFTFT-----GLNSEQVAFMTKEYHIYMTSD-----------------------------G--R  381 (407)
Q Consensus       339 ~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~g-----------------------------g--R  381 (407)
                      ++.   +.+. .+..+.+.|.     ..+.+.+.+.|.++||.+.++                             +  |
T Consensus       294 ~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lR  370 (399)
T 2oga_A          294 LPG---IGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLS  370 (399)
T ss_dssp             CTT---CBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEE
T ss_pred             CCC---ccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEE
Confidence            631   3432 2334444432     235666666666789988652                             2  6


Q ss_pred             EEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          382 ISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       382 is~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |++.. .+++|+++++++|+++++++
T Consensus       371 i~~~~~~t~edi~~~~~~l~~~~~~l  396 (399)
T 2oga_A          371 LPIGPHLERPQALRVIDAVREWAERV  396 (399)
T ss_dssp             ECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            66653 47899999999999998764

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.95  E-value=1.4e-27  Score=223.91  Aligned_cols=326  Identities=17%  Similarity=0.088  Sum_probs=215.3

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      ++.+|||+.+.+    + +.++.+.+++.+.+.   .....|.+.....++++.+++++ +.      +.++++  |+||
T Consensus         6 ~~~~id~~~~~~----~-~~~~~v~~a~~~~~~---~~~~~~~~~~~~~~l~~~la~~~-g~------~~~v~~--~~~g   68 (356)
T 1v72_A            6 RPPALGFSSDNI----A-GASPEVAQALVKHSS---GQAGPYGTDELTAQVKRKFCEIF-ER------DVEVFL--VPTG   68 (356)
T ss_dssp             CCCCCBCSCGGG----C-CCCHHHHHHHHHTTS---SCCCSTTCSHHHHHHHHHHHHHH-TS------CCEEEE--ESCH
T ss_pred             CCceEeeccCCc----c-CCCHHHHHHHHhhcc---CcccccccchHHHHHHHHHHHHh-CC------CCcEEE--eCCc
Confidence            467899998753    3 334455555544432   12345655556778888888877 41      256899  9999


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH--Hhhc--CceeeEEEeecCCCCCcChhhHHH-HHHcC-----CCCc
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV--FTLA--GLSVKTYRYYDPATRGLNFQGLLE-DLRAA-----PSGA  179 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~--~~~~--G~~~~~v~~~~~~~~~~d~~~l~~-~i~~~-----~~~~  179 (407)
                      ++++.+++  .....+||.|+++.|+|......  +...  |.+++.+|..   ++.+|++++++ ++.+.     ++++
T Consensus        69 t~a~~~al--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~  143 (356)
T 1v72_A           69 TAANALCL--SAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPA  143 (356)
T ss_dssp             HHHHHHHH--HTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEE
T ss_pred             cHHHHHHH--HHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCce
Confidence            99999984  33467999999999998766555  6666  9999999873   36799999999 88631     1345


Q ss_pred             EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccC--CCCCchhHHHHHHHHcCCcEEEEEecCccccc
Q 015435          180 IVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS--GSLDADAQSVRMFVADGGECLVAQSYAKNMGL  257 (407)
Q Consensus       180 ~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~  257 (407)
                      ++++ ++|+| ||.+++.+++++|+++|++||+++|+|++|..+..  .+.......    ...... +++.|+||. + 
T Consensus       144 ~v~~-~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~~~d-~~~~s~sK~-g-  214 (356)
T 1v72_A          144 CVSI-TQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMT----WKAGVD-ALSFGATKN-G-  214 (356)
T ss_dssp             EEEE-ESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTT----GGGTCC-EEEECCGGG-T-
T ss_pred             EEEE-EcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhh----hhhcCC-EEEEecccC-C-
Confidence            6666 66887 99999999999999999999999999999865421  111101000    011222 445699997 3 


Q ss_pred             cCCCcc--eeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015435          258 YGERVG--ALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDA  335 (407)
Q Consensus       258 ~G~r~G--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (407)
                        .|+|  |+   ..++++.+++..... ... ........++..+...+++..        ..+..++++++++++.+.
T Consensus       215 --~~~G~g~~---~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~l~~~  279 (356)
T 1v72_A          215 --VLAAEAIV---LFNTSLATEMSYRRK-RAG-HLSSKMRFLSAQIDAYLTDDL--------WLRNARKANAAAQRLAQG  279 (356)
T ss_dssp             --CSSCEEEE---ESSGGGHHHHHHHHH-HTT-CCCSSTHHHHHHHHHHTSTTH--------HHHHHHHHHHHHHHHHHH
T ss_pred             --CcCccEEE---EECHHHHhhHHHHhh-ccC-chhhhHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHH
Confidence              3677  55   446776665543211 111 111122233333444554321        223456677888999999


Q ss_pred             HHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCC----C--eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          336 LSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD----G--RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       336 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g----g--Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                      |+++..   +.+..+.++++.|+.+..+....+ .++||.+.+|    +  ||++.. .+++++++++++|++++++
T Consensus       280 L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~  352 (356)
T 1v72_A          280 LEGLGG---VEVLGGTEANILFCRLDSAMIDAL-LKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADR  352 (356)
T ss_dssp             HTTCTT---EEEESCCCSSEEEEEECHHHHHHH-HHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred             HhhCCC---cEEccCCCccEEEEEcCHHHHHHH-HhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            987521   666566677788887766555555 5579999864    2  888653 4779999999999988765

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.95  E-value=7.4e-27  Score=224.53  Aligned_cols=317  Identities=17%  Similarity=0.139  Sum_probs=216.8

Q ss_pred             eeeeeeeecCCCccccchhHHHHHHHHhccccccccCCC-CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHH
Q 015435           35 NLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLP-IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSL  113 (407)
Q Consensus        35 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~  113 (407)
                      +|+.|.+   +. +.|+.+.+++.+.+.  .   ..|.+ ..+..++++++++++ +.       +++++  |+|+++++
T Consensus        20 ~l~~~~p---~~-~~p~~~~~a~~~~~~--~---~~y~~~~~~~~~l~~~la~~~-~~-------~~v~~--~~ggt~al   80 (424)
T 2po3_A           20 PLLVGRP---NR-IDRARLYERLDRALD--S---QWLSNGGPLVREFEERVAGLA-GV-------RHAVA--TCNATAGL   80 (424)
T ss_dssp             CEETTCC---CC-CCHHHHHHHHHHHHH--H---TCCSSSCHHHHHHHHHHHHHH-TS-------SEEEE--ESCHHHHH
T ss_pred             cccccCC---CC-CChHHHHHHHHHHHh--c---CCcccCCHHHHHHHHHHHHHh-CC-------CeEEE--eCCHHHHH
Confidence            6888875   33 345566666666554  2   24766 678999999999999 53       58999  99999999


Q ss_pred             HHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCC
Q 015435          114 RVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGV  193 (407)
Q Consensus       114 ~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~  193 (407)
                      .+++..+   .+||+|++++|+|..+...+...|.+++.++++ +.++.+|++++++.+.  ++++++++ +   ||||.
T Consensus        81 ~~~l~~l---~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~--~~~~~v~~-~---~~tG~  150 (424)
T 2po3_A           81 QLLAHAA---GLTGEVIMPSMTFAATPHALRWIGLTPVFADID-PDTGNLDPDQVAAAVT--PRTSAVVG-V---HLWGR  150 (424)
T ss_dssp             HHHHHHH---TCCSEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTSSBCHHHHGGGCC--TTEEEEEE-E---CGGGC
T ss_pred             HHHHHHc---CCCCEEEECCCccHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHhhC--cCCcEEEE-E---CCCCC
Confidence            9995433   478999999999999999999999999999984 4467789999999886  45666666 2   48998


Q ss_pred             CCCHHHHHHHHHHHHHcCceeeeccccc-cccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecCh
Q 015435          194 DPTLEQWEQIRQLMRSKGLLPFFDSAYQ-GFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTE  272 (407)
Q Consensus       194 ~~~~~~l~~i~~~~~~~~~~li~D~~y~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~  272 (407)
                      .   .++++|+++|+++|+++|+|++|. ++.+++.     +   +....+  +++.||||..+++|.|+||+  +++++
T Consensus       151 ~---~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~-----~---~~~~~d--i~~~S~sk~K~l~~~~~G~~--v~~~~  215 (424)
T 2po3_A          151 P---CAADQLRKVADEHGLRLYFDAAHALGCAVDGR-----P---AGSLGD--AEVFSFHATKAVNAFEGGAV--VTDDA  215 (424)
T ss_dssp             C---CCHHHHHHHHHHTTCEEEEECTTCTTCEETTE-----E---TTSSSS--EEEEECCTTSSSCCSSCEEE--EESCH
T ss_pred             c---CCHHHHHHHHHHcCCEEEEECccccCCeECCe-----e---cccccC--EEEEeCCCCCCccCCCCeEE--EeCCH
Confidence            5   468889999999999999999998 5665421     1   111122  88999996666777899999  67767


Q ss_pred             hhHHHHHHHHhhhhhc-ccC----CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435          273 DVASRVESQLKLVIRP-MYS----SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH  347 (407)
Q Consensus       273 ~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  347 (407)
                      ++.+.+.......... ...    ....+.+.++...+...       +.+++.+++.+++++++.+.|++++.   +.+
T Consensus       216 ~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~g---~~~  285 (424)
T 2po3_A          216 DLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSL-------DAFPEVIDRNRRNHAAYREHLADLPG---VLV  285 (424)
T ss_dssp             HHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCSCTT---EEE
T ss_pred             HHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccCCC---ccc
Confidence            7666655432211100 000    00011222222222211       23556667777888888888877631   555


Q ss_pred             cc-CCce---eEEe-c-------CCCHHHHHHhHhhccEEEcCC--------------------C--e-----EEec---
Q 015435          348 II-KQIG---MFTF-T-------GLNSEQVAFMTKEYHIYMTSD--------------------G--R-----ISMA---  385 (407)
Q Consensus       348 ~~-~~~~---~~~~-~-------~~~~~~~~~~l~~~gi~~~~g--------------------g--R-----is~~---  385 (407)
                      .. +.++   ++.| +       +.+.+.+.+.|.++||.+.+.                    +  |     |+++   
T Consensus       286 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~  365 (424)
T 2po3_A          286 ADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGT  365 (424)
T ss_dssp             CCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCST
T ss_pred             cCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCC
Confidence            44 3332   2222 2       345666777777799998752                    0  3     6664   


Q ss_pred             CCCCCChhHHHHHHHHHHHh
Q 015435          386 GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       386 ~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ..+++++++++++|++++++
T Consensus       366 ~~t~e~i~~~~~~L~~~~~~  385 (424)
T 2po3_A          366 AIGDDDIRRVADLLRLCATR  385 (424)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhh
Confidence            25789999999999998764

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.95  E-value=8.1e-27  Score=227.12  Aligned_cols=339  Identities=12%  Similarity=0.099  Sum_probs=214.1

Q ss_pred             CCCeeeeeeee-eecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           30 SPVKLNLGVGA-YRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        30 ~~~~i~l~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      +.++++++.|. +.|-.....++.+.++..+.+.  .. ...|.+..+..++++++++++ +.       +++++  |+|
T Consensus        33 g~~~~~~~~g~~ylD~~~~~~~~~v~~a~~~~~~--~~-~~~y~~~~~~~~l~~~la~~~-~~-------~~v~~--t~g   99 (467)
T 1ax4_A           33 GYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMI--TG-DEAYAGSRNYYDLKDKAKELF-NY-------DYIIP--AHQ   99 (467)
T ss_dssp             TSCGGGSCGGGCSEECSCSSSCCCEEHHHHHHHH--TC-CCCSSSCHHHHHHHHHHHHHH-CC-------CEEEE--ESS
T ss_pred             CcCcccCCCCceeeecccCcCCHHHHHHHHHHHh--hc-ccccccCccHHHHHHHHHHHc-CC-------CcEEE--cCC
Confidence            44556666553 1121111112455555555554  22 335877788999999999998 53       68999  999


Q ss_pred             cccHHHHHHHHHHhhc----CCCe---EEecCCCCCChHHHHhhcCceeeEEEeec--------CCCCCcChhhHHHHHH
Q 015435          109 GTGSLRVGAEFLARHY----HQLT---IYIPQPTWGNHPKVFTLAGLSVKTYRYYD--------PATRGLNFQGLLEDLR  173 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~----~gd~---Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~--------~~~~~~d~~~l~~~i~  173 (407)
                      ||+|+.++++.+  ..    +||.   |+++.+.|..+...+...|.+++.++...        +.++.+|+++|++++.
T Consensus       100 gt~A~~~al~~~--~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~  177 (467)
T 1ax4_A          100 GRGAENILFPVL--LKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIA  177 (467)
T ss_dssp             HHHHHHHHHHHH--HHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHH
T ss_pred             cHHHHHHHHHHH--HHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHH
Confidence            999999996444  55    8998   99997777777888888999988776521        1134689999999997


Q ss_pred             cC--CCCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeecccccc--c--------cCCCCCchhHHHH-HHH
Q 015435          174 AA--PSGAIVLLHACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG--F--------ASGSLDADAQSVR-MFV  239 (407)
Q Consensus       174 ~~--~~~~~v~i~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~--~--------~~~~~~~~~~~~~-~~~  239 (407)
                      +.  ++++++++ ++|+||| |.+++.+++++|+++|++||++||+|+++..  .        .+.+.  +...+. ...
T Consensus       178 ~~~~~~~~~vi~-~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  254 (467)
T 1ax4_A          178 QHGADNIVAIVS-TVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA--TIKEVIFDMY  254 (467)
T ss_dssp             HHCGGGEEEEEE-ESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC--CHHHHHHHHG
T ss_pred             hcCCCCeeEEEE-eccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC--chhhhhhhhc
Confidence            42  14566666 8999999 8999999999999999999999999998542  0        22221  111111 000


Q ss_pred             HcCCcEEEEEecCccccccCCCc-ceeEEeecCh-hhHHHHHHHHhhhhhcccC-CCChhHHHHHHHHhcChhhHHhHHH
Q 015435          240 ADGGECLVAQSYAKNMGLYGERV-GALSIVCKTE-DVASRVESQLKLVIRPMYS-SPPIHGASIVATILKDSTMYKEWTL  316 (407)
Q Consensus       240 ~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~  316 (407)
                      ...+  +++.|+||.++++   + |++  +++|+ ++.+.+............. ..+...+.++...++...      +
T Consensus       255 ~~~d--~~~~s~sK~~g~~---~Gg~~--~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~  321 (467)
T 1ax4_A          255 KYAD--ALTMSAKKDPLLN---IGGLV--AIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGT------E  321 (467)
T ss_dssp             GGCS--EEEEETTSTTCCS---SCEEE--EESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTT------C
T ss_pred             cccc--eEEEeccccCCCC---cceEE--EeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhh------h
Confidence            1122  4568999998754   4 455  45656 7666654422211111111 222222222222232110      0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC-------CC-----HHHH-HHhHhhccEEEcC-----
Q 015435          317 ELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG-------LN-----SEQV-AFMTKEYHIYMTS-----  378 (407)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~-----~~~~-~~~l~~~gi~~~~-----  378 (407)
                        ++..++..++++++.+.|++.+    +.+..+.++++.|++       +.     .+.+ ..+++++||.+.+     
T Consensus       322 --~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~  395 (467)
T 1ax4_A          322 --EEYLHYRIGQVKYLGDRLREAG----IPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFL  395 (467)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTT----CCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHH
T ss_pred             --hhHHHHHHHHHHHHHHHHHhCC----CCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccc
Confidence              0112223356778888887755    566667778888765       32     2334 4454788999876     


Q ss_pred             -------C-------C--eEEecC--CCCCChhHHHHHHHHHHHh
Q 015435          379 -------D-------G--RISMAG--LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       379 -------g-------g--Ris~~~--~~~e~i~~~~~~l~~~l~~  405 (407)
                             |       +  ||++..  .+++++++++++|++++++
T Consensus       396 ~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~  440 (467)
T 1ax4_A          396 LGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK  440 (467)
T ss_dssp             HCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred             cccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence                   2       3  888872  4789999999999988765

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.95  E-value=8.3e-27  Score=221.09  Aligned_cols=296  Identities=15%  Similarity=0.122  Sum_probs=200.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh---cCCCeEEec-CCCCCCh-HHHHhhcCcee
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH---YHQLTIYIP-QPTWGNH-PKVFTLAGLSV  150 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~---~~gd~Vi~~-~p~y~~~-~~~~~~~G~~~  150 (407)
                      ...++++.+++++ +.. ..++++++++  |+|+|+++.+++..  ..   .+||+|+++ .|.|..+ ...++..|.++
T Consensus        39 ~~~~~~~~l~~~~-~~~-~~~~~~~v~~--~~g~t~al~~~~~~--~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~  112 (385)
T 2bkw_A           39 IFQRVLKNTRAVF-KSA-AASKSQPFVL--AGSGTLGWDIFASN--FILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQV  112 (385)
T ss_dssp             HHHHHHHHHHHHT-TCC-GGGTCEEEEE--ESCTTHHHHHHHHH--HSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHh-CCC-CCCCCceEEE--cCchHHHHHHHHHH--HhccCCCCCeEEEEcCCcchHHHHHHHHHcCCce
Confidence            4667888999988 332 2234579999  99999999999533  34   789999888 4566555 36777889999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc--CceeeeccccccccCCCC
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK--GLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~li~D~~y~~~~~~~~  228 (407)
                      +.++.. +.++.+|++++++++++ .+++++++ ++|+||||.+.+   +++|+++|++|  |+++|+|++|..... ..
T Consensus       113 ~~v~~~-~~~~~~d~~~l~~~l~~-~~~~~v~~-~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~~-~~  185 (385)
T 2bkw_A          113 DVVRPL-KIGESVPLELITEKLSQ-NSYGAVTV-THVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGCE-EF  185 (385)
T ss_dssp             EEECCS-STTSCCCHHHHHHHHHH-SCCSEEEE-ESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTTS-CC
T ss_pred             EEEecC-CCCCCCCHHHHHHHHhc-CCCCEEEE-EccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCCc-cc
Confidence            999873 23467899999999973 25677776 899999999887   67888889999  999999999863221 11


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCcccc-ccCCCcceeEEeecChhhHH-HHH------------------HHHhhhhh-
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMG-LYGERVGALSIVCKTEDVAS-RVE------------------SQLKLVIR-  287 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~v~~~~~~~~-~~~------------------~~~~~~~~-  287 (407)
                        +   +    ...+..+++.|+||.++ ++|  +|++  +++ ++..+ .+.                  ........ 
T Consensus       186 --~---~----~~~~~d~~~~s~~K~~~~~~G--~G~~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (385)
T 2bkw_A          186 --E---F----DEWGVDFALTASQKAIGAPAG--LSIS--LCS-SRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAG  251 (385)
T ss_dssp             --C---T----TTTTCSEEEEESSSTTCCCSC--EEEE--EEC-HHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTT
T ss_pred             --c---c----cccCceEEEecCccccccCCc--ceEE--EEc-HHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhcc
Confidence              1   1    11234678899999664 556  4888  565 33332 221                  00111111 


Q ss_pred             --cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccccC-----CceeEEecC
Q 015435          288 --PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL-SARGTPGDWSHIIK-----QIGMFTFTG  359 (407)
Q Consensus       288 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~-----~~~~~~~~~  359 (407)
                        ....+++..++.++..+++...     ...+++.+++++++++++.+.| ++.+    +.+..+     ..+.+.|+.
T Consensus       252 ~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~~~~~~~~~~~~~~  322 (385)
T 2bkw_A          252 KGAYFATPPVQLINSLDVALKEIL-----EEGLHKRWDLHREMSDWFKDSLVNGLQ----LTSVSRYPSNMSAHGLTAVY  322 (385)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHTTTC----CEESSCSSSTTBCSSCEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHHHHHHhcC----ceecccCcccccCCceEEEe
Confidence              0112456666666655554321     0125677888899999999999 8775    554432     234555554


Q ss_pred             CC-HHHHHHhHhhccEEEcCCC---------eEE-ec----CCCCCChhHHHHHHHHHHHhhC
Q 015435          360 LN-SEQVAFMTKEYHIYMTSDG---------RIS-MA----GLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       360 ~~-~~~~~~~l~~~gi~~~~gg---------Ris-~~----~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      +. .+.+.+.|.++||.+.+|.         ||+ ++    ..+++++++++++|+++++++|
T Consensus       323 ~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~~~  385 (385)
T 2bkw_A          323 VADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRKK  385 (385)
T ss_dssp             CSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC--
T ss_pred             cCCHHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHhcC
Confidence            42 4445555566899998851         998 66    2488999999999999988765

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.95  E-value=6.2e-27  Score=226.77  Aligned_cols=341  Identities=12%  Similarity=0.089  Sum_probs=212.8

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc---cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK---EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      .+..++|++.|.+..+.| +.++.+++++.+++.  .....   .| +.....++++.+++++ +     .+.++|++  
T Consensus        48 ~g~~~lD~~~~~~~~~lG-~~~~~v~~a~~~~~~--~~~~~~~~~~-~~~~~~~l~~~la~~~-~-----~~~~~v~~--  115 (449)
T 3a8u_X           48 KGRKVYDSLSGLWTCGAG-HTRKEIQEAVAKQLS--TLDYSPGFQY-GHPLSFQLAEKITDLT-P-----GNLNHVFF--  115 (449)
T ss_dssp             TCCEEEETTHHHHTCTTC-BSCHHHHHHHHHHTT--TCSCCCSSSC-CCHHHHHHHHHHHTTS-S-----TTEEEEEE--
T ss_pred             CCCEEEECCccHhhccCC-CCCHHHHHHHHHHHH--hCCCcccccc-CCHHHHHHHHHHHHhC-C-----CCCCEEEE--
Confidence            457899999887644456 446677777777765  21111   22 1122334444444443 2     23478999  


Q ss_pred             cCCcccHHHHHHHHHHhhc------CCCeEEecCCCCCChHH-HHhhcCc------------eeeEEEeecCCC---CCc
Q 015435          106 CLSGTGSLRVGAEFLARHY------HQLTIYIPQPTWGNHPK-VFTLAGL------------SVKTYRYYDPAT---RGL  163 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~------~gd~Vi~~~p~y~~~~~-~~~~~G~------------~~~~v~~~~~~~---~~~  163 (407)
                      |+||+++++++++.+....      ++|+|++.+|+|+++.. .+...|.            .++.++......   .++
T Consensus       116 ~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  195 (449)
T 3a8u_X          116 TDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRG  195 (449)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSS
T ss_pred             cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccC
Confidence            9999999999976553322      67899999999987754 4444331            234444311101   124


Q ss_pred             C--------hhhHHHHHHcCC-CCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435          164 N--------FQGLLEDLRAAP-SGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ  233 (407)
Q Consensus       164 d--------~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~  233 (407)
                      |        ++++++.+.+.. .+..++++...+||||+ +.+++.+++|+++|++||++||+||+|.+|+..+.   ..
T Consensus       196 d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~  272 (449)
T 3a8u_X          196 MPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS---MF  272 (449)
T ss_dssp             SCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SS
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc---ch
Confidence            6        899999887321 23333442333577997 56799999999999999999999999988876432   12


Q ss_pred             HHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhh---------hhcccCCCChhHHHHHHH
Q 015435          234 SVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLV---------IRPMYSSPPIHGASIVAT  303 (407)
Q Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  303 (407)
                      ....+ ....+++   |+||.++ +| +|+||+  +++ ++    +.+.+...         ....+.+++.+++.++.+
T Consensus       273 ~~~~~-~~~~di~---s~sK~l~-~G~~~~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~a  340 (449)
T 3a8u_X          273 GADSF-GVTPDLM---CIAKQVT-NGAIPMGAV--IAS-TE----IYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLA  340 (449)
T ss_dssp             HHHHH-TCCCSEE---EECGGGG-TTSSCCEEE--EEE-HH----HHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHH
T ss_pred             hhhhc-CCCCCEE---EEccccc-CCCCceEEE--EEC-HH----HHHHhhccCcccccccccccCCCcccHHHHHHHHH
Confidence            22222 2122322   8899998 57 999998  565 34    44444332         112344677888888877


Q ss_pred             HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcccccCCceeEEecCCC-----H----HHHHHhHhhcc
Q 015435          304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT-PGDWSHIIKQIGMFTFTGLN-----S----EQVAFMTKEYH  373 (407)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~l~~~g  373 (407)
                      +++...      +  +...++++++++++.+.|++++. +. +....+ .|.+.|+.+.     .    ..+...|.++|
T Consensus       341 al~~~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~G  410 (449)
T 3a8u_X          341 ALCLLQ------K--ENLVQSVAEVAPHFEKALHGIKGAKN-VIDIRN-FGLAGAIQIAPRDGDAIVRPFEAGMALWKAG  410 (449)
T ss_dssp             HHHHHH------H--TTHHHHHHHHHHHHHHHHHTTTTSTT-EEEEEE-ETTEEEEEECCBTTBSSHHHHHHHHHHHHHT
T ss_pred             HHHHHH------h--cCHHHHHHHHHHHHHHHHHHHhcCCC-eEEEee-eEEEEEEEEecCcccccccHHHHHHHHHHCC
Confidence            775321      1  24567778888888888887541 11 122233 3455555331     1    12444444579


Q ss_pred             EEEcCCC---eEEec-CCCCCChhHHHHHHHHHHHhh
Q 015435          374 IYMTSDG---RISMA-GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       374 i~~~~gg---Ris~~-~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |.+.++|   ||++. ..+++++++++++|+++++++
T Consensus       411 v~v~~~g~~iRis~~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          411 FYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             EECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             cEEecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            9999875   88854 358899999999999998764

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.95  E-value=4.5e-27  Score=227.99  Aligned_cols=328  Identities=14%  Similarity=0.054  Sum_probs=200.1

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      .+..+|||+.|.+..+.| +.++.+++++.+++.  ...  .|   .+..++++++++++....+   ..++|++  |+|
T Consensus        55 ~g~~~iD~~~~~~~~~lg-~~~~~v~~a~~~~~~--~~~--~~---~~~~~~~~~la~~l~~~~~---~~~~v~~--~~g  121 (453)
T 2cy8_A           55 DGNVYLDFFGGHGALVLG-HGHPRVNAAIAEALS--HGV--QY---AASHPLEVRWAERIVAAFP---SIRKLRF--TGS  121 (453)
T ss_dssp             TCCEEEESCTTTTSCTTC-BTCHHHHHHHHHHHT--TTC--SS---CSSCHHHHHHHHHHHHHCT---TCSEEEE--ESC
T ss_pred             CCCEEEECcccHhhcccC-CCCHHHHHHHHHHHH--hCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEEE--eCC
Confidence            467899999997544456 456677777777775  221  22   1345788888888844322   3489999  999


Q ss_pred             cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhh-----------cCce------eeEEEeecCCCCCcChhhHHHH
Q 015435          109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTL-----------AGLS------VKTYRYYDPATRGLNFQGLLED  171 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~-----------~G~~------~~~v~~~~~~~~~~d~~~l~~~  171 (407)
                      |++|+++++++...+..++.|++.+|+|+++......           .|..      +..++    .   .|++++++.
T Consensus       122 g~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~---~d~~~le~~  194 (453)
T 2cy8_A          122 GTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR----P---DDIEGMREV  194 (453)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEEC----T---TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC----C---CCHHHHHHH
Confidence            9999999976543345668899999999876553321           1321      22221    1   388999998


Q ss_pred             HHcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEE
Q 015435          172 LRAA-PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQ  249 (407)
Q Consensus       172 i~~~-~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  249 (407)
                      +.+. ++++++++ .+.+||||.+ .+++++++|+++|++||++||+||+|.++ ..+   .......+ ....+   +.
T Consensus       195 l~~~~~~~~~vi~-ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g---~~~~~~~~-~~~~d---i~  265 (453)
T 2cy8_A          195 FANHGSDIAAFIA-EPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVG---NHGMQALL-DVQPD---LT  265 (453)
T ss_dssp             HHHHGGGEEEEEE-CSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTC---TTHHHHHH-TCCCS---EE
T ss_pred             HHhcCCCEEEEEE-CCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccC---chhhhHHh-CCCCc---EE
Confidence            8742 23344443 3345779976 57999999999999999999999999988 433   12222222 11222   23


Q ss_pred             ecCccccccCCCcceeEEeecChhhHHHHHHHHhh-----hhhcccCCCChhHHHHHHHHhcC-hhhHHhHHHHHHHHHH
Q 015435          250 SYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL-----VIRPMYSSPPIHGASIVATILKD-STMYKEWTLELKAMAD  323 (407)
Q Consensus       250 s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~  323 (407)
                      |+||.++ +|+|+||+  +++     +++.+.+..     .....+++++++++.++.++++. .  .       +...+
T Consensus       266 s~sK~l~-~G~~~G~v--~~~-----~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~--~-------~~~~~  328 (453)
T 2cy8_A          266 CLAKASA-GGLPGGIL--GGR-----EDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL--E-------DDVCA  328 (453)
T ss_dssp             EEEGGGG-TTSSCEEE--EEC-----HHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH--H-------TTHHH
T ss_pred             EEChhhh-CCcceEEE--ech-----HHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh--h-------hhHHH
Confidence            8999999 59999999  566     344444433     11223446778888887777653 2  1       22345


Q ss_pred             HHHHHHHHHHHHHHhc----CCCCCcccccCCceeEEecCCC-----------------------HHHHHHhHhhccEEE
Q 015435          324 RIISMRQQLFDALSAR----GTPGDWSHIIKQIGMFTFTGLN-----------------------SEQVAFMTKEYHIYM  376 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~gi~~  376 (407)
                      +++++++++.+.|+++    +.   .....+.|. +.|+.+.                       ...+...|.++||.+
T Consensus       329 ~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v  404 (453)
T 2cy8_A          329 KINDLGQFAREAMNHLFARKGL---NWLAYGRFS-GFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDI  404 (453)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTC---CEEEECCTT-EEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHHHHHHHHHHHhhCCC---cEEEEEeee-EEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEE
Confidence            5566666666666554    31   122344444 4454321                       223444444589999


Q ss_pred             cCCCeEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          377 TSDGRISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       377 ~~ggRis~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .|++|+.+.. .+++++++++++|+++++++
T Consensus       405 ~~~~~~~l~~~~t~~~i~~~l~~l~~~l~~~  435 (453)
T 2cy8_A          405 GGRGSVFLSAQHEREHVEHLVTTFDRVLDRL  435 (453)
T ss_dssp             BTTTEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence            8877544332 48899999999999988753

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.95  E-value=7e-26  Score=215.88  Aligned_cols=250  Identities=14%  Similarity=0.093  Sum_probs=170.6

Q ss_pred             eeeeeeeeecCCCc--cccchhHHHHHHHHhccccccccCC--CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           34 LNLGVGAYRTEEGK--PLVLNVVRKAEQLLVNDQSRVKEYL--PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        34 i~l~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~--~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      -.+++|.|   +..  +...+.+.+.+.... +....+.|.  +.....++++.+++++ +.       ++.++  ++||
T Consensus        23 ~~~~~~~~---d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~-g~-------~~~i~--~~sG   88 (398)
T 2rfv_A           23 STGALSTP---IFQTSTFVFDSAEQGAARFA-LEESGYIYTRLGNPTTDALEKKLAVLE-RG-------EAGLA--TASG   88 (398)
T ss_dssp             TTCCSSCC---CCCCSBCCCSSHHHHHHHC------CCSBTTTCCHHHHHHHHHHHHHH-TC-------SEEEE--ESSH
T ss_pred             CCCCcCCC---CcCCCccccCCHHHHHHhhc-CCCCCCceeCCCChHHHHHHHHHHHHh-CC-------CcEEE--ECCH
Confidence            45777765   331  223333333333221 112233343  4556788999999988 43       35666  7777


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEec
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA  185 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~  185 (407)
                      ++++.+++  ...+.+||+|+++.|+|.++...+    +..|.+++.++.       .|++++++.+.  ++++++++ +
T Consensus        89 ~~a~~~~l--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~i~--~~~~~v~~-~  156 (398)
T 2rfv_A           89 ISAITTTL--LTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-------AKPEEIRAAMR--PETKVVYI-E  156 (398)
T ss_dssp             HHHHHHHH--HHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT-------TSHHHHHHHCC--TTEEEEEE-E
T ss_pred             HHHHHHHH--HHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHhcC--CCCeEEEE-E
Confidence            89999985  334779999999999999988876    788999998876       18899999887  55666666 8


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ce
Q 015435          186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GA  264 (407)
Q Consensus       186 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~  264 (407)
                      +|+||||.+++   +++|+++|++||+++|+|++|..+.+..    ..      . .+..+++.|+||.++.+|+|+ ||
T Consensus       157 ~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~----~~------~-~~~di~~~s~sK~~~~~g~~~~G~  222 (398)
T 2rfv_A          157 TPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ----PL------Q-LGADIVVHSVTKYINGHGDVIGGI  222 (398)
T ss_dssp             SSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----GG------G-GTCSEEEEETTTTTTCSSCCCCEE
T ss_pred             CCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch------h-hCCcEEEEeCcccccCCCCceEEE
Confidence            99999999986   8888999999999999999998776531    11      1 246789999999999999998 88


Q ss_pred             eEEeecChhhHHHHHHHHhhhhhcc-cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435          265 LSIVCKTEDVASRVESQLKLVIRPM-YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR  339 (407)
Q Consensus       265 ~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  339 (407)
                      +  +++ ++..+   ..+....... ..+.+.+.+.++...++...          ...++..++.+.+.+.+++.
T Consensus       223 ~--~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~l~~~l~~~  282 (398)
T 2rfv_A          223 I--VGK-QEFID---QARFVGLKDITGGCMSPFNAWLTLRGVKTLG----------IRMERHCENALKIARFLEGH  282 (398)
T ss_dssp             E--EEC-HHHHH---HHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHHHHHHTC
T ss_pred             E--EEC-HHHHH---HHHHHHHHhCCCCCCCHHHHHHHHhhhhhHH----------HHHHHHHHHHHHHHHHHHcC
Confidence            8  565 33222   1333333333 34677788888887776432          22233445666666666654

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.95  E-value=7.1e-27  Score=218.74  Aligned_cols=285  Identities=14%  Similarity=0.125  Sum_probs=198.9

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCCh--HHHHhhcCceeeE
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNH--PKVFTLAGLSVKT  152 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~--~~~~~~~G~~~~~  152 (407)
                      .+..++++.+++++ +..   .+++++++  |+|+++++.+++  ...+ . |+|++++++|+++  ...++..|.+++.
T Consensus        33 ~~~~~l~~~la~~~-g~~---~~~~~v~~--t~g~t~a~~~~~--~~~~-~-d~vl~~~~~~~~~~~~~~~~~~g~~~~~  102 (353)
T 2yrr_A           33 RVNRAIQERLAALF-DPG---EGALVAAL--AGSGSLGMEAGL--ANLD-R-GPVLVLVNGAFSQRVAEMAALHGLDPEV  102 (353)
T ss_dssp             HHHHHHHHHHHHHH-CCC---TTCEEEEE--SSCHHHHHHHHH--HTCS-C-CCEEEEECSHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHHh-CCC---CCCceEEE--cCCcHHHHHHHH--HHhc-C-CcEEEEcCCCchHHHHHHHHHcCCceEE
Confidence            45789999999988 432   22478999  999999999984  2223 3 8999999988875  4556788999999


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      ++.+  .++.+|++++++.+++. +++++++ ++|+||||.+++   +++|+++|++||+++|+|++|. +.....    
T Consensus       103 v~~~--~~~~~d~~~l~~~l~~~-~~~~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~-~~~~~~----  170 (353)
T 2yrr_A          103 LDFP--PGEPVDPEAVARALKRR-RYRMVAL-VHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTT-LGMLPF----  170 (353)
T ss_dssp             EECC--TTSCCCHHHHHHHHHHS-CCSEEEE-ESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTT-TTTSCC----
T ss_pred             EeCC--CCCCCCHHHHHHHHHhC-CCCEEEE-EccCCCcceecC---HHHHHHHHHHcCCeEEEEcCcc-cccccc----
Confidence            9983  34679999999999832 5677766 899999999887   6688888999999999999995 332211    


Q ss_pred             HHHHHHHHcCCcEEEEEecCccc-cccCCCcceeEEeecChhhHHHHHHHHh-------------hh--hhcccCCCChh
Q 015435          233 QSVRMFVADGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASRVESQLK-------------LV--IRPMYSSPPIH  296 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~  296 (407)
                       ++..+    +..+++.|++|.+ +.+|  +||+  +++ ++    +.+.+.             ..  ......+++..
T Consensus       171 -~~~~~----~~d~~~~s~~K~~~~~~g--~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (353)
T 2yrr_A          171 -SMRAM----GVDYAFTGSQKCLSAPPG--LAPI--AAS-LE----ARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVL  236 (353)
T ss_dssp             -CHHHH----TCSEEECCTTSTTCCCSS--CEEE--EEC-HH----HHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHH
T ss_pred             -ccccc----CceEEEecCcccccCCCc--eEEE--EEC-HH----HHHHhccCCCccccHHHHhhhhhcCCCCCCCCHH
Confidence             12211    2357788999965 4455  6998  565 33    333332             00  11122355666


Q ss_pred             HHHHHHHHhcChhhHHhHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC--ceeEEec----CCCHHHHHHhH
Q 015435          297 GASIVATILKDSTMYKEWTLE-LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ--IGMFTFT----GLNSEQVAFMT  369 (407)
Q Consensus       297 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~l  369 (407)
                      .+.++..+++..      .+. +++.+++++++++++.+.|++.+    +.+..+.  ++++.++    +.+.+.+.+.|
T Consensus       237 ~~~a~~~al~~~------~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  306 (353)
T 2yrr_A          237 LHYALLEALDLV------LEEGVAARERRAREVYAWVLEELKARG----FRPYPKASPLPTVLVVRPPEGVDADRLVRAL  306 (353)
T ss_dssp             HHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHTT----CEESCSSSBCTTEEEEECCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHCC----CccccCccCCCeEEEEECCCCCCHHHHHHHH
Confidence            666665555422      122 66788899999999999998875    5554442  4444444    33566665555


Q ss_pred             hhccEEEcCC------C--eEEe-cCCCCCChh-HHHHHHHHHHHh
Q 015435          370 KEYHIYMTSD------G--RISM-AGLSSKTVP-HLTDAIHAAVTR  405 (407)
Q Consensus       370 ~~~gi~~~~g------g--Ris~-~~~~~e~i~-~~~~~l~~~l~~  405 (407)
                      .++||.+.+|      +  ||++ ...++++++ +++++|+++++.
T Consensus       307 ~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          307 YAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             HHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             HHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence            6679999875      2  9998 335889999 999999998864

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.95  E-value=6.2e-27  Score=225.08  Aligned_cols=327  Identities=13%  Similarity=0.030  Sum_probs=208.7

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..+..+|||+.|.+..+.| +.++.+++++.+++.  ......| +.....++++.+++++ +      ..+++++  |+
T Consensus        49 ~~g~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~--~~~~~~~-~~~~~~~l~~~l~~~~-~------~~~~v~~--~~  115 (424)
T 2e7u_A           49 ADGNRYLDYVMSWGPLILG-HAHPKVLARVRETLE--RGLTFGA-PSPLEVALAKKVKRAY-P------FVDLVRF--VN  115 (424)
T ss_dssp             TTCCEEEESSGGGTTCTTC-BTCHHHHHHHHHHHH--TCSCCSS-CCHHHHHHHHHHHHHC-T------TCCEEEE--ES
T ss_pred             CCCCEEEEccccccccccC-CCCHHHHHHHHHHHH--hCCCCCC-CCHHHHHHHHHHHHhC-C------CCCEEEE--eC
Confidence            3567899999987544456 456677777777775  2222233 2233455666666654 2      2489999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-h-------------cCc------eeeEEEeecCCCCCcChhh
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-L-------------AGL------SVKTYRYYDPATRGLNFQG  167 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~-------------~G~------~~~~v~~~~~~~~~~d~~~  167 (407)
                      ||+++++.++++...+.+++.|++.+|+|+++..... .             .|+      ++..++.       .|+++
T Consensus       116 ~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~  188 (424)
T 2e7u_A          116 SGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEG  188 (424)
T ss_dssp             SHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHH
T ss_pred             CHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHH
Confidence            9999999997654445567899999999988765332 1             122      2333322       38899


Q ss_pred             HHHHHHcCCCCcEEEEecCCCCC-CCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          168 LLEDLRAAPSGAIVLLHACAHNP-TGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       168 l~~~i~~~~~~~~v~i~~~p~NP-tG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +++.+.+.+.+..+++ ++|+|| ||.+. +++++++|.++ ++||++||+||+|.++ ..+   .......+ ....++
T Consensus       189 le~~l~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g---~~~~~~~~-~~~~di  261 (424)
T 2e7u_A          189 LREVLKRRGEEIAAII-FEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLA---FGGATELL-GLKPDL  261 (424)
T ss_dssp             HHHHHHHHGGGEEEEE-ECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSS---TTHHHHHH-TCCCSE
T ss_pred             HHHHHHhCCCCEEEEE-EeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccc---hhHHHHHh-CCCcch
Confidence            9998863212334444 456665 89764 79999999999 9999999999999988 432   12222222 212232


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh---hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI---RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                         .||||.++ +|+|+||+  +++     +++.+.+....   ...+++.+++++.++.++++...      + .++..
T Consensus       262 ---~s~sK~l~-~G~~~G~~--~~~-----~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~-~~~~~  323 (424)
T 2e7u_A          262 ---VTLGKILG-GGLPAAAY--AGR-----REIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLE------E-NPGYY  323 (424)
T ss_dssp             ---EEECGGGG-TTSSCEEE--EEC-----HHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHH------H-CTHHH
T ss_pred             ---hhhhhhhh-CCcceEEE--EEc-----HHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHH------h-ccHHH
Confidence               38999999 59999999  566     44555444311   12234677888888887776321      1 13456


Q ss_pred             HHHHHHHHHHHHHHHhc----CCCCCcccccCCceeEEecCCC-----------------HHHHHHhHhhccEEEcCCC-
Q 015435          323 DRIISMRQQLFDALSAR----GTPGDWSHIIKQIGMFTFTGLN-----------------SEQVAFMTKEYHIYMTSDG-  380 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~~~~gg-  380 (407)
                      ++++++++++.+.|+++    +.   .....+.|. +.|+.+.                 ...+.+.|.++||.+.+++ 
T Consensus       324 ~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~  399 (424)
T 2e7u_A          324 AYLEDLGARLEAGLKEVLKEKGL---PHTVNRVGS-MITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF  399 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTC---CCEEEEETT-EEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCC---ceEEEeece-EEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC
Confidence            67777777777777664    42   112334444 5555432                 1234444446899999986 


Q ss_pred             -eEEecC-CCCCChhHHHHHHHHHH
Q 015435          381 -RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       381 -Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                       |+.+.. .+++++++++++|++++
T Consensus       400 ~~~~~~~~~t~~~i~~~l~~l~~~l  424 (424)
T 2e7u_A          400 EAAFLSVAHREEDVEKTLEALRKAL  424 (424)
T ss_dssp             SCEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             CceEeeccCCHHHHHHHHHHHHHhC
Confidence             544332 48899999999998763

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.95  E-value=8.1e-27  Score=220.54  Aligned_cols=289  Identities=15%  Similarity=0.143  Sum_probs=192.7

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH--HHHhhcCceeeEEE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP--KVFTLAGLSVKTYR  154 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~--~~~~~~G~~~~~v~  154 (407)
                      ..++++.+++++ +..   .+.+.+++  |+||++++++++  ...+.+||+|++++|.|.++.  ..+...|.+++.++
T Consensus        54 ~~~~~~~la~~~-g~~---~~~~~i~~--~~ggt~al~~~~--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~  125 (376)
T 3f0h_A           54 MLENEKFMLEYA-KAP---EGSKAVFM--TCSSTGSMEAVV--MNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALK  125 (376)
T ss_dssp             HHHHHHHHHHHH-TCC---TTCEEEEE--SSCHHHHHHHHH--HHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHHh-CCC---CCceEEEE--cCChhHHHHHHH--HhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEe
Confidence            455666677766 432   11234666  889999999995  344789999999998776554  34667899999998


Q ss_pred             eecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435          155 YYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS  234 (407)
Q Consensus       155 ~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~  234 (407)
                      .  +.++.+|++++++.+.  ++++++++ ++|+||||.+++   +++|+++|++||+++|+|+++..+... .  +   
T Consensus       126 ~--~~~~~~d~~~l~~~~~--~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~-~--~---  191 (376)
T 3f0h_A          126 L--EHGKKLTKEKLYEYDN--QNFTGLLV-NVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLADP-F--N---  191 (376)
T ss_dssp             C--CTTCCCCHHHHHTTTT--SCCCEEEE-ESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSC-C--C---
T ss_pred             C--CCCCCCCHHHHHHhhc--cCceEEEE-ecccCCcceecC---HHHHHHHHHHcCCEEEEEcCccccCcc-c--c---
Confidence            8  3457899999998765  56777776 889999999998   888899999999999999998765532 1  1   


Q ss_pred             HHHHHHcCCcEEEEEecCcccc-ccCCCcceeEEeecChhhHHHHHHHH------------hhhh-hcccCCCChhHHHH
Q 015435          235 VRMFVADGGECLVAQSYAKNMG-LYGERVGALSIVCKTEDVASRVESQL------------KLVI-RPMYSSPPIHGASI  300 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~v~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~  300 (407)
                      +..    .+..+++.|+||.++ ++|  +|++  +++ +++.+.+....            .... .....+++...+.+
T Consensus       192 ~~~----~~~d~~~~s~~K~l~~~~G--~g~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  262 (376)
T 3f0h_A          192 MNE----CGADVMITGSQKVLACPPG--ISVI--VLA-PRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQ  262 (376)
T ss_dssp             HHH----HTCSEEEEETTTTTCCCSS--CEEE--EEC-HHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHH
T ss_pred             ccc----cCccEEEecCcccccCCCc--eEEE--EEC-HHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHH
Confidence            111    123588899999998 555  5676  454 44443332200            0000 00122334433344


Q ss_pred             HHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC--CceeEEec--CCCHHHHH-HhHhhccE
Q 015435          301 VATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDWSHIIK--QIGMFTFT--GLNSEQVA-FMTKEYHI  374 (407)
Q Consensus       301 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~-~~l~~~gi  374 (407)
                      +..+++...     .. .+++.+++++++++++.+.|++.+    +.+..+  ...++.+.  +.+.+.+. .+++++||
T Consensus       263 ~~~al~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi  333 (376)
T 3f0h_A          263 INERLKEIK-----KHGGADAEVARIASQAADFRAKIKDLP----FELVSESPANGVTSVHPTTANAYDIFLKLKDEYGI  333 (376)
T ss_dssp             HHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHTTTSS----EEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSE
T ss_pred             HHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHcC----CccCccccCceEEEEeCCCCCHHHHHHHHHHhCCE
Confidence            444443211     01 367788888999999999998876    444432  23333333  45666555 45454599


Q ss_pred             EEcCCC--------eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          375 YMTSDG--------RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       375 ~~~~gg--------Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                      .+.+|.        ||++.. .+++++++++++|++++++
T Consensus       334 ~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          334 WICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             ECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             EEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            998752        999864 5789999999999999864

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.95  E-value=2.9e-26  Score=216.47  Aligned_cols=322  Identities=12%  Similarity=0.048  Sum_probs=200.2

Q ss_pred             CCC-CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           29 TSP-VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        29 ~~~-~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      .+. +++|++.|.+   .. +.++.+++++.   .     ..+|  ..-...+++.+++++ +..    +++++++  |+
T Consensus        25 ~g~~~v~~~~~~~~---~~-~~~~~v~~a~~---~-----~~~~--~~~~~~~~~~~a~~~-g~~----~~~~~~~--~~   83 (374)
T 2aeu_A           25 KGRDALYDLSGLSG---GF-LIDEKDKALLN---T-----YIGS--SYFAEKVNEYGLKHL-GGD----ENDKCVG--FN   83 (374)
T ss_dssp             TCGGGCEECSSCCC---CC-CCCHHHHHHHT---S-----TTHH--HHHHHHHHHHHHHHH-TCC----TTEEEEE--ES
T ss_pred             cCccceeeecccCC---CC-CCCHHHHHHHH---H-----hcCc--hHHHHHHHHHHHHHh-CCC----CcceEEE--Ec
Confidence            344 6889998763   22 44444444432   1     1111  111134444455554 431    2368888  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcE-EEE
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAI-VLL  183 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~-v~i  183 (407)
                      ||++++.+++.   .+ +||+|+++.|+|+++..   .++..|.+++.+         .|++++++. .  +++++ +++
T Consensus        84 ggt~a~~~~~~---~~-~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~--~~~~~~v~~  147 (374)
T 2aeu_A           84 RTSSAILATIL---AL-KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-I--DKDTLVIIT  147 (374)
T ss_dssp             SHHHHHHHHHH---HH-CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-C--CTTEEEEEE
T ss_pred             ChHHHHHHHHH---hC-CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-C--CCccEEEEE
Confidence            99999999843   34 99999999999887655   567889988877         277888876 4  56777 655


Q ss_pred             ecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435          184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG  263 (407)
Q Consensus       184 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  263 (407)
                       ++|+||||.  +..++++|+++|++||+++|+|++|..+..+... ..... .+    ...++++|+||.+  +|+|+|
T Consensus       148 -~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~~-~~----~~di~~~S~sK~l--~g~~~G  216 (374)
T 2aeu_A          148 -GSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFN-QPPAL-KL----GADLVVTSTDKLM--EGPRGG  216 (374)
T ss_dssp             -CBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTT-CCCHH-HH----TCSEEEEETTSSS--SSCSCE
T ss_pred             -ccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCcccccccccc-cCCcc-cc----CCcEEEecCcccc--cCcceE
Confidence             899999996  6899999999999999999999998766410000 00011 11    2358889999985  578999


Q ss_pred             eeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015435          264 ALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG  343 (407)
Q Consensus       264 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  343 (407)
                      |+  +++ ++    +.+.+.........+++.+.+.++...++.... +.+.+..++.+...++.++.+.+.|.......
T Consensus       217 ~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  288 (374)
T 2aeu_A          217 LL--AGK-KE----LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNL-ERIRKAFERAKNFDLSKIEKLNKELKAIDDNI  288 (374)
T ss_dssp             EE--EEE-HH----HHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCH-HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTE
T ss_pred             EE--EEC-HH----HHHHHHHhhccccCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence            98  465 44    444444443333345677788877777764320 01111111111111122456666665431000


Q ss_pred             Cccc-ccCCceeEEecCCCH--H------HHHHhHhhccEEEcCCC---------eEEecCC--CCCChhHHHHHHHHHH
Q 015435          344 DWSH-IIKQIGMFTFTGLNS--E------QVAFMTKEYHIYMTSDG---------RISMAGL--SSKTVPHLTDAIHAAV  403 (407)
Q Consensus       344 ~~~~-~~~~~~~~~~~~~~~--~------~~~~~l~~~gi~~~~gg---------Ris~~~~--~~e~i~~~~~~l~~~l  403 (407)
                      ++.+ ..+.+.++.|.....  +      ++.++++++||.+.||.         ||+++..  .+.+++++.+.|++++
T Consensus       289 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l  368 (374)
T 2aeu_A          289 NIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESI  368 (374)
T ss_dssp             EEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHH
T ss_pred             CcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHH
Confidence            1444 355666666654432  1      44577788999998851         9998742  2345889999999888


Q ss_pred             Hhh
Q 015435          404 TRM  406 (407)
Q Consensus       404 ~~~  406 (407)
                      +++
T Consensus       369 ~~~  371 (374)
T 2aeu_A          369 KMA  371 (374)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.95  E-value=4.5e-26  Score=216.49  Aligned_cols=305  Identities=12%  Similarity=0.000  Sum_probs=204.6

Q ss_pred             chhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hcCCCeE
Q 015435           51 LNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLTI  129 (407)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~V  129 (407)
                      +.+.+++.+.+.  .. ...|.+..+..++++++++++ +..      +.|++  ++| |+++.+++  ... +.+||+|
T Consensus        17 ~~~~~a~~~~l~--~~-~~~~~~~~~~~~l~~~la~~~-~~~------~~i~~--~sG-t~al~~~l--~~l~~~~gd~V   81 (388)
T 1b9h_A           17 DAERNGLVRALE--QG-QWWRMGGDEVNSFEREFAAHH-GAA------HALAV--TNG-THALELAL--QVMGVGPGTEV   81 (388)
T ss_dssp             HHHHHHHHHHHH--TS-CCBTTTCSHHHHHHHHHHHHT-TCS------EEEEE--SCH-HHHHHHHH--HHTTCCTTCEE
T ss_pred             HHHHHHHHHHHH--cC-CeeecCCHHHHHHHHHHHHHh-CCC------eEEEe--CCH-HHHHHHHH--HHcCCCCcCEE
Confidence            566666666665  22 235667788999999999998 431      45555  655 89999984  333 5789999


Q ss_pred             EecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHH
Q 015435          130 YIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS  209 (407)
Q Consensus       130 i~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~  209 (407)
                      +++.|+|..+...++..|++++.++++ +.++.+|++++++.+.  +++++++    |+||||.+.+   +++|+++|++
T Consensus        82 i~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~i~--~~~~~v~----~~n~tG~~~~---l~~i~~la~~  151 (388)
T 1b9h_A           82 IVPAFTFISSSQAAQRLGAVTVPVDVD-AATYNLDPEAVAAAVT--PRTKVIM----PVHMAGLMAD---MDALAKISAD  151 (388)
T ss_dssp             EEESSSCTHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCC--TTEEEEC----CBCGGGCCCC---HHHHHHHHHH
T ss_pred             EECCCccHHHHHHHHHcCCEEEEEecC-CCcCCCCHHHHHHhcC--cCceEEE----EeCCccCcCC---HHHHHHHHHH
Confidence            999999999999999999999999984 4457899999999986  4444433    7999999864   7888888999


Q ss_pred             cCceeeeccccccc-cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhh--HHHHHHHHhhhh
Q 015435          210 KGLLPFFDSAYQGF-ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV--ASRVESQLKLVI  286 (407)
Q Consensus       210 ~~~~li~D~~y~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~--~~~~~~~~~~~~  286 (407)
                      ||+++|+|++|+.+ .+.+.  +      +...  ..+.+.||||..+++|.|+||+  +++++++  .+.+........
T Consensus       152 ~~~~li~D~a~~~g~~~~~~--~------~~~~--~~i~~~S~s~~K~l~g~~~G~~--~~~~~~~~~~~~~~~~~~~~~  219 (388)
T 1b9h_A          152 TGVPLLQDAAHAHGARWQGK--R------VGEL--DSIATFSFQNGKLMTAGEGGAV--VFPDGETEKYETAFLRHSCGR  219 (388)
T ss_dssp             HTCCBCEECTTCTTCEETTE--E------GGGS--SSCEEEECCTTSSSCSSSCEEE--EECTTCHHHHHHHHHHTBTTC
T ss_pred             cCCEEEEecchhcCCccCCe--e------cccc--cceEEEEccCCCcccCCCeEEE--EECCHHHHHHHHHHHHHhCCC
Confidence            99999999999753 33221  1      1111  2578889997777777899998  5775544  343332111100


Q ss_pred             h-----c-----ccC-CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc------
Q 015435          287 R-----P-----MYS-SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII------  349 (407)
Q Consensus       287 ~-----~-----~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------  349 (407)
                      .     .     .+. ..+.+...++...+          +.+++.+++++++++++.+.|++++.   +.+..      
T Consensus       220 ~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~----------~~l~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~  286 (388)
T 1b9h_A          220 PRDDRRYFHKIAGSNMRLNEFSASVLRAQL----------ARLDEQIAVRDERWTLLSRLLGAIDG---VVPQGGDVRAD  286 (388)
T ss_dssp             CTTCSSCCCCSCCCBCBCBHHHHHHHHHHH----------TTHHHHHHHHHHHHHHHHHHHHTSTT---CEECCCCTTCC
T ss_pred             CccCccceeecccccCCcCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccCCC---ccccCCCcCCC
Confidence            0     0     000 12222222222222          22455667788889999999988732   44443      


Q ss_pred             CCceeEEecCCC------HHHHHHhHhhccEEEcCC---------------------------C----------eEEecC
Q 015435          350 KQIGMFTFTGLN------SEQVAFMTKEYHIYMTSD---------------------------G----------RISMAG  386 (407)
Q Consensus       350 ~~~~~~~~~~~~------~~~~~~~l~~~gi~~~~g---------------------------g----------Ris~~~  386 (407)
                      +.++++.|+.+.      .+.+...|.++||.+.++                           +          ||++..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~  366 (388)
T 1b9h_A          287 RNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRV  366 (388)
T ss_dssp             BCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGG
T ss_pred             ccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCC
Confidence            345667766442      334555555689988542                           0          555543


Q ss_pred             -C-CCCChhHHHHHHHHHHHh
Q 015435          387 -L-SSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       387 -~-~~e~i~~~~~~l~~~l~~  405 (407)
                       + +++|++++++.|++++++
T Consensus       367 ~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          367 LLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence             5 788999999999998865

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.95  E-value=8.7e-27  Score=225.46  Aligned_cols=343  Identities=11%  Similarity=0.029  Sum_probs=216.9

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhH-H-HHHH---HHhcccccc-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCce
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVV-R-KAEQ---LLVNDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRV  101 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~-~-~~~~---~~~~~~~~~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i  101 (407)
                      ..+..++||+.|.+..+.| +.++.++ + ++.+   ++. ..... ..| +.....++++.+++++ +.    ...++|
T Consensus        51 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~~~A~~~~~~~~~-~~~~~~~~~-~~~~~~~la~~la~~~-~~----~~~~~v  122 (449)
T 2cjg_A           51 ITGRRYLDMFTFVASSALG-MNPPALVDDREFHAELMQAA-LNKPSNSDV-YSVAMARFVETFARVL-GD----PALPHL  122 (449)
T ss_dssp             TTCCEEEESSHHHHTCSSC-BSCHHHHTCHHHHHHHHHHH-TCCCCTTTC-CCHHHHHHHHHHHHHH-CC----TTCCEE
T ss_pred             CCCcEEEEccCCccccCCC-CCCHHHHHHHHHHHHHHHHH-hcCCCCccc-CCHHHHHHHHHHHHhc-CC----CCCCEE
Confidence            3567899998887644556 4466666 6 7777   664 11111 113 2334567788888877 31    234899


Q ss_pred             EEeecCCcccHHHHHHHHHHhh-c-----------CCCeEEecCCCCCChHHHHhh-cC--------c-----eeeEEEe
Q 015435          102 TTVQCLSGTGSLRVGAEFLARH-Y-----------HQLTIYIPQPTWGNHPKVFTL-AG--------L-----SVKTYRY  155 (407)
Q Consensus       102 ~~~~t~g~t~a~~~~~~~~~~~-~-----------~gd~Vi~~~p~y~~~~~~~~~-~G--------~-----~~~~v~~  155 (407)
                      ++  |+||++|++.+++++..+ .           +||+|++.+|+|+++...... .|        .     +++.+|.
T Consensus       123 ~~--~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (449)
T 2cjg_A          123 FF--VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY  200 (449)
T ss_dssp             EE--ESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCC
T ss_pred             EE--eCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcC
Confidence            99  999999999997665432 1           289999999999887553322 22        1     4555555


Q ss_pred             ecCCCC--------CcChhhHHHHHHcC-CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435          156 YDPATR--------GLNFQGLLEDLRAA-PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS  225 (407)
Q Consensus       156 ~~~~~~--------~~d~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~  225 (407)
                      .++...        ..+++++++.+.+. ++++++++ ++.+||||. +++++++++|+++|++||++||+||+|.++++
T Consensus       201 ~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~  279 (449)
T 2cjg_A          201 MRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVA-EPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGL  279 (449)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEE-CSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred             CCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEE-eCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCc
Confidence            320011        14566688888642 33445444 555789995 89999999999999999999999999998877


Q ss_pred             CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHH-HHhhhhhcccCCCChhHHHHHHHH
Q 015435          226 GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVES-QLKLVIRPMYSSPPIHGASIVATI  304 (407)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  304 (407)
                      .+.   .+....+ ....++   .+|||.+     |+||+  +++ +++.+.+.. .........+++++++++.++.++
T Consensus       280 ~g~---~~~~~~~-~~~~di---~t~sK~l-----~iG~~--~~~-~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aa  344 (449)
T 2cjg_A          280 TGT---AWAYQQL-DVAPDI---VAFGKKT-----QVCGV--MAG-RRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRI  344 (449)
T ss_dssp             TSS---SSTHHHH-TCCCSE---EEECGGG-----SSEEE--EEC-GGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHH
T ss_pred             cCc---ceeeccc-CCCceE---EEecCcc-----cEEEE--EEC-HHHhhhhhhcccCCcccccCCCCCHHHHHHHHHH
Confidence            542   1222222 222233   3689987     79999  565 343332111 011122224457788889888888


Q ss_pred             hcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccccCCceeEEecCCC----HH-HHHHhHhhccEEEc
Q 015435          305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFTGLN----SE-QVAFMTKEYHIYMT  377 (407)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~l~~~gi~~~  377 (407)
                      ++...      +  +...++++++++++.+.|+++  +.+..+....+.+.++. +.+.    .+ +...++ ++||.+.
T Consensus       345 l~~~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~l~-~~Gv~v~  414 (449)
T 2cjg_A          345 LEVIE------A--EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCA-FSLPTTADRDELIRQLW-QRAVIVL  414 (449)
T ss_dssp             HHHHH------H--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEE-EECSSHHHHHHHHHHHH-HTTEECE
T ss_pred             HHHHH------h--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEE-EEECChHHHHHHHHHHH-HCCeEEe
Confidence            76321      1  245577778888888888765  21110223445555554 4542    22 344555 5899999


Q ss_pred             CCC----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          378 SDG----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       378 ~gg----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++|    ||+++. .+++++++++++|+++++++
T Consensus       415 ~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          415 PAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             EETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            875    886543 48899999999999998764

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.95  E-value=5.6e-26  Score=217.12  Aligned_cols=324  Identities=15%  Similarity=0.160  Sum_probs=213.0

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCC---CcHH--HHH-----HHHHHHhCCCCCCCCCCc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIV---GLVD--FNK-----LSAKLILGADSPAIKDNR  100 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~---g~~~--l~~-----~~a~~~~~~~~~~~~~~~  100 (407)
                      .++|||+.|..      +.++.+.+++.+.+.  ......|+...   |.+.  +++     .+++++ +.     ++++
T Consensus        23 ~~~i~~~~~~~------~~~~~v~~a~~~~~~--~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~-g~-----~~~~   88 (407)
T 2dkj_A           23 REGLELIASEN------FVSKQVREAVGSVLT--NKYAEGYPGARYYGGCEVIDRVESLAIERAKALF-GA-----AWAN   88 (407)
T ss_dssp             HTSEECCTTCC------CCCHHHHHHHTSGGG--GCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TC-----SEEE
T ss_pred             hcceeeccCCC------CCCHHHHHHHHhhhh--cCcccCCCcccccCCchHHHHHHHHHHHHHHHHh-CC-----Ccce
Confidence            57899998863      445566666655553  11223453322   4332  333     666666 43     1234


Q ss_pred             eEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH---HHHhhcCceeeEEEee-cCCCCCcChhhHHHHHHcCC
Q 015435          101 VTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP---KVFTLAGLSVKTYRYY-DPATRGLNFQGLLEDLRAAP  176 (407)
Q Consensus       101 i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~---~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~  176 (407)
                      +++  ++| ++++.++++.+  +.+||+|++++|+|..+.   ..++..|..++.+++. ++.++.+|++++++.+.+ +
T Consensus        89 i~~--~sG-t~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~  162 (407)
T 2dkj_A           89 VQP--HSG-SQANMAVYMAL--MEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE-H  162 (407)
T ss_dssp             CCC--SSH-HHHHHHHHHHH--CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH-H
T ss_pred             EEe--cch-HHHHHHHHHHh--cCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh-c
Confidence            544  554 56999985444  779999999999999883   5556667755555542 234578999999999973 1


Q ss_pred             CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccc-ccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG-FASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      +++++++ ++|+||  ...   ++++|+++|++||+++|+|++|.. +.+.+.....     +   ....++++|+||. 
T Consensus       163 ~~~~v~~-~~p~~~--~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~-----~---~~~di~~~s~sK~-  227 (407)
T 2dkj_A          163 RPKVIVA-GASAYP--RFW---DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP-----L---PYAHVVTSTTHKT-  227 (407)
T ss_dssp             CCSEEEE-CCSSCC--SCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC-----T---TTCSEEEEESSGG-
T ss_pred             CCeEEEE-eccccC--CCC---CHHHHHHHHHHcCCEEEEEccccccccccCccCCc-----c---ccccEEEEecccc-
Confidence            5677777 899998  444   488999999999999999999986 4433211100     0   1257889999995 


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccC-CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYS-SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                       ++|.|+||+  +++++++.+.+..    ....+.. +++...+.++..+++...     ...+++.+++++++++++.+
T Consensus       228 -l~g~~~G~~--~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~  295 (407)
T 2dkj_A          228 -LRGPRGGLI--LSNDPELGKRIDK----LIFPGIQGGPLEHVIAGKAVAFFEAL-----QPEFKEYSRLVVENAKRLAE  295 (407)
T ss_dssp             -GCCCSCEEE--EESCHHHHHHHHH----HHTTTTCSSCCHHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCCceEE--EECCHHHHHHHHh----hhcccccCCCcHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHH
Confidence             468899999  5765666555443    2222222 334333334444444211     14467788899999999999


Q ss_pred             HHHhcCCCCCccccc-CCceeEEecCC-----CHHHHHHhHhhccEEEcCC------------C--eEEecC-----CCC
Q 015435          335 ALSARGTPGDWSHII-KQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSD------------G--RISMAG-----LSS  389 (407)
Q Consensus       335 ~l~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~g------------g--Ris~~~-----~~~  389 (407)
                      .|++.+    +.+.. +..+.+.|+.+     +.+.+.+.|.++||.+.++            +  ||+++.     .++
T Consensus       296 ~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~  371 (407)
T 2dkj_A          296 ELARRG----YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTP  371 (407)
T ss_dssp             HHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCG
T ss_pred             HHHhCC----ceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCH
Confidence            999886    55543 34556666543     5566666677799998763            1  998852     489


Q ss_pred             CChhHHHHHHHHHHHh
Q 015435          390 KTVPHLTDAIHAAVTR  405 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~  405 (407)
                      +++++++++|++++++
T Consensus       372 ~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          372 EEMPLVAELIDRALLE  387 (407)
T ss_dssp             GGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999998865

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.95  E-value=1.1e-27  Score=228.45  Aligned_cols=314  Identities=16%  Similarity=0.095  Sum_probs=191.8

Q ss_pred             cccchhHHHHHHHHhccccccc-cCC----CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVK-EYL----PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR  122 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~-~y~----~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~  122 (407)
                      +.++.+++++.+.+.+...... .|.    ......++++.+++++ +.     ++++|++  |+|+++++.+++..  .
T Consensus        31 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~-----~~~~v~~--~~g~t~al~~~~~~--l  100 (400)
T 3vax_A           31 RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTV-SA-----EPDELIF--TSGATESNNIALLG--L  100 (400)
T ss_dssp             SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHT-TC-----CGGGEEE--ESCHHHHHHHHHHT--T
T ss_pred             CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHc-CC-----CCCcEEE--eCCHHHHHHHHHHH--H
Confidence            5566666666666541000000 111    1223567788888877 42     2478999  99999999999533  3


Q ss_pred             h----cCCC-eEEecCCCCCChHHHHhh---cCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCC
Q 015435          123 H----YHQL-TIYIPQPTWGNHPKVFTL---AGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVD  194 (407)
Q Consensus       123 ~----~~gd-~Vi~~~p~y~~~~~~~~~---~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~  194 (407)
                      +    .+|| +|+++.++|+.+...+..   .|.+++.++.+  .++.+|++++++++.  ++++++++ ++|+||||.+
T Consensus       101 ~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~  175 (400)
T 3vax_A          101 APYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPG--PSGRISVEGVMERLR--PDTLLVSL-MHVNNETGVI  175 (400)
T ss_dssp             HHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCC--TTCCCCHHHHHTTCC--TTEEEEEC-CSBCTTTCBB
T ss_pred             HHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccC--CCCCcCHHHHHHhcC--CCceEEEE-ECCCCCceee
Confidence            4    6899 999999999988666553   69999999983  357789999999886  45556555 9999999998


Q ss_pred             CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe-ecChh
Q 015435          195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV-CKTED  273 (407)
Q Consensus       195 ~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v-~~~~~  273 (407)
                      .+   +++|+++|++||+++|+|++|+.....      ..   + ... ..+++.|+||.+|.+|  +|++  + +++++
T Consensus       176 ~~---l~~i~~la~~~~~~li~D~a~~~~~~~------~~---~-~~~-~d~~~~s~~K~~g~~g--~g~~--~~~~~~~  237 (400)
T 3vax_A          176 QP---VAELAQQLRATPTYLHVDAAQGYGKVP------GD---L-TTP-IDMISISGHKIGAPKG--VGAL--VTRRREE  237 (400)
T ss_dssp             CC---HHHHHHHHTTSSCEEEEECTTTTTTSG------GG---G-GSC-CSEEEEETGGGTSCSS--CEEE--EECBCSS
T ss_pred             Cc---HHHHHHHHHhcCCEEEEEhhhhcCCCC------cC---h-hhc-CcEEEEeHHHhCCCCc--eEEE--EEecchh
Confidence            87   678888899999999999998733211      11   1 112 4588999999777555  5666  4 55421


Q ss_pred             hH---HHHHHHHhh---hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435          274 VA---SRVESQLKL---VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH  347 (407)
Q Consensus       274 ~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  347 (407)
                      +.   ..+...+..   .......+++...+.++..+++..      .+.+++.+++++++++++.+.|+ ...   +.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~  307 (400)
T 3vax_A          238 MDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIF------EAEHAQWQVAAQDLRSRLLAGLA-STS---FQV  307 (400)
T ss_dssp             STTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH------HHSHHHHHHHHHHHHHHHHHHHT-TTT---CEE
T ss_pred             ccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHhhC-CCC---EEE
Confidence            11   111111100   001122345666666555555422      23467888999999999999998 432   555


Q ss_pred             ccCCc----eeEEec--CCCHHHHHHhHhhccEEEcCC-------------------------C--eEEe-cC-CCCCCh
Q 015435          348 IIKQI----GMFTFT--GLNSEQVAFMTKEYHIYMTSD-------------------------G--RISM-AG-LSSKTV  392 (407)
Q Consensus       348 ~~~~~----~~~~~~--~~~~~~~~~~l~~~gi~~~~g-------------------------g--Ris~-~~-~~~e~i  392 (407)
                      ..+.+    +++.+.  +.+.+.+.+.|. +||.+.+|                         +  ||++ +. .+++++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i  386 (400)
T 3vax_A          308 NGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDV  386 (400)
T ss_dssp             CSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC-------
T ss_pred             eCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHH
Confidence            54443    333332  456666666667 89988774                         4  9999 63 478999


Q ss_pred             hHHHHHHHHHHHh
Q 015435          393 PHLTDAIHAAVTR  405 (407)
Q Consensus       393 ~~~~~~l~~~l~~  405 (407)
                      ++++++|++++++
T Consensus       387 ~~~~~~l~~~~~~  399 (400)
T 3vax_A          387 EELARGVAKLKPS  399 (400)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998764

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.7e-26  Score=222.83  Aligned_cols=308  Identities=12%  Similarity=0.123  Sum_probs=210.2

Q ss_pred             cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh---cCC---CeEEecCCCCCChHH
Q 015435           68 VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH---YHQ---LTIYIPQPTWGNHPK  141 (407)
Q Consensus        68 ~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~---~~g---d~Vi~~~p~y~~~~~  141 (407)
                      ..+|....+..++++.+++++....+...+++++++  |+||++++.+++..+...   .+|   |+|+++.|+|..+..
T Consensus        96 ~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~--~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~  173 (497)
T 3mc6_A           96 QLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTT--TSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDK  173 (497)
T ss_dssp             TTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEE--ESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHH
T ss_pred             CCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEE--cCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHH
Confidence            344555567777777777776443333333578999  999999999996444221   145   899999999999999


Q ss_pred             HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc
Q 015435          142 VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ  221 (407)
Q Consensus       142 ~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~  221 (407)
                      .++..|.+++.+|++ +.++.+|++++++++.  ++++++++ ++|+||||.+.+   +++|+++|++||+++|+|++|.
T Consensus       174 ~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~--~~~~~v~~-~~p~nptG~~~~---l~~i~~la~~~g~~livD~a~~  246 (497)
T 3mc6_A          174 AAYYFGMKLRHVELD-PTTYQVDLGKVKKFIN--KNTVLLVG-SAPNFPHGIADD---IEGLGKIAQKYKLPLHVDSCLG  246 (497)
T ss_dssp             HHHHSCCEEEEECBC-TTTCSBCTTTTGGGCC--SSEEEEEE-ETTCTTTCCCCS---CTTTTTHHHHTTCCEEEETTTT
T ss_pred             HHHHcCCeEEEEecC-cccCcCCHHHHHHHHh--hCCEEEEE-ECCCCCCCcCCC---HHHHHHHHHHhCCEEEEECcch
Confidence            999999999999984 3367899999999987  45556555 999999999865   7788888999999999999998


Q ss_pred             cccCC-----CCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhccc-----C
Q 015435          222 GFASG-----SLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMY-----S  291 (407)
Q Consensus       222 ~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~  291 (407)
                      ++...     +.. ....+.  .......+++.|++|.++ +|.++|++  +++++..    .. ........+     .
T Consensus       247 ~~~~~f~~~~~~~-~~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~--~~~~~~~----~~-~~~~~~~~~~~~~~~  315 (497)
T 3mc6_A          247 SFIVSFMEKAGYK-NLPLLD--FRVPGVTSISCDTHKYGF-APKGSSVI--MYRNSDL----RM-HQYYVNPAWTGGLYG  315 (497)
T ss_dssp             HHHHGGGTTTTCC-SCCCCS--TTSTTCCEEEEETTTTTC-CCSSCEEE--ECSSHHH----HT-TTSCCBTTCTTSCBC
T ss_pred             hhhhhhhhhhccc-CCcccc--ccCCCCcEEEECchhhcC-CCCCceeE--EecCHHH----Hh-hhhcccccccCCCcC
Confidence            55321     000 000000  011234577889999764 67889999  5764432    11 111111100     0


Q ss_pred             CCC---------hhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcccc-cCCceeEEec--
Q 015435          292 SPP---------IHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWSHI-IKQIGMFTFT--  358 (407)
Q Consensus       292 ~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~-~~~~~~~~~~--  358 (407)
                      .++         ..++.++...+..        ..+++..++..++++++.+.|++ ++.   +.+. .+.++++.|.  
T Consensus       316 ~~~~~g~~~~~~~~a~~aal~~l~~--------~~~~~~~~~~~~~~~~l~~~L~~~~~g---~~~~~~~~~~~v~~~~~  384 (497)
T 3mc6_A          316 SPTLAGSRPGAIVVGCWATMVNMGE--------NGYIESCQEIVGAAMKFKKYIQENIPD---LDIMGNPRYSVISFSSK  384 (497)
T ss_dssp             CSSSCSSCBHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHSCTT---CEECSCCCSSEEEEECT
T ss_pred             CcCcccCCcchhHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHhcCCC---EEEecCCCeeEEEEeCC
Confidence            111         2234444444332        33567778888899999999998 432   5554 4666776665  


Q ss_pred             CCCHHHHHHhHhhccEEEcCCC-----eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          359 GLNSEQVAFMTKEYHIYMTSDG-----RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       359 ~~~~~~~~~~l~~~gi~~~~gg-----Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.+...+.+.|.++||.+.+++     |+++...+++++++++++|+++++++
T Consensus       385 ~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~  437 (497)
T 3mc6_A          385 TLNIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQEL  437 (497)
T ss_dssp             TTTHHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence            4466667666677899887653     88888668899999999999998754

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.94  E-value=5.4e-25  Score=216.65  Aligned_cols=307  Identities=13%  Similarity=0.078  Sum_probs=204.5

Q ss_pred             ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCce--EEeecCCcccHHHHHHHHHHhhcCC--------CeEEecCCCCCC
Q 015435           69 KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRV--TTVQCLSGTGSLRVGAEFLARHYHQ--------LTIYIPQPTWGN  138 (407)
Q Consensus        69 ~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i--~~~~t~g~t~a~~~~~~~~~~~~~g--------d~Vi~~~p~y~~  138 (407)
                      ..|....+..++++++++++....+...+++++  ++  |+|+++++.++++.+  ..+|        |+|+++.|+|..
T Consensus       129 ~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~--t~ggt~a~~~al~a~--~~~g~~~~g~~~d~Vi~~~~~~~~  204 (514)
T 3mad_A          129 LHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV--TSGGTESLLLAMKTY--RDWARATKGITAPEAVVPVSAHAA  204 (514)
T ss_dssp             TCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEE--ESSHHHHHHHHHHHH--HHHHHHHHCCSSCEEEEETTSCTH
T ss_pred             cccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEE--cCcHHHHHHHHHHHH--HHHhhhhcCCCCCeEEEeCccchH
Confidence            344444566677777766664433333333677  88  999999999996544  3344        899999999999


Q ss_pred             hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecc
Q 015435          139 HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDS  218 (407)
Q Consensus       139 ~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~  218 (407)
                      +...++..|.+++.+|++ + ++.+|++++++++.  ++++++++ ++|+||||.+.+   +++|+++|++||++||+|+
T Consensus       205 ~~~~~~~~G~~v~~v~~~-~-~~~~d~~~Le~~i~--~~~~~v~~-~~~~nptG~~~~---l~~i~~la~~~~i~livDe  276 (514)
T 3mad_A          205 FDKAAQYFGIKLVRTPLD-A-DYRADVAAMREAIT--PNTVVVAG-SAPGYPHGVVDP---IPEIAALAAEHGIGCHVDA  276 (514)
T ss_dssp             HHHHHHHHTCEEEEECBC-T-TSCBCHHHHHHHCC--TTEEEEEE-ETTCTTTCCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHHcCCeeEEeeeC-C-CCCCCHHHHHHHhc--cCCEEEEE-eCCCCCCccccC---HHHHHHHHHHhCCeEEEec
Confidence            999999999999999983 3 67899999999997  45666655 899999999876   7888888999999999999


Q ss_pred             ccccccCC-----CCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhh------
Q 015435          219 AYQGFASG-----SLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIR------  287 (407)
Q Consensus       219 ~y~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~------  287 (407)
                      +|.++...     +..  ...+.  .......+++.|++|.++ +|.++|++  +++++....    .......      
T Consensus       277 a~~~~~~~~~~~~g~~--~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~--~~~~~~~~~----~~~~~~~~~~~~~  345 (514)
T 3mad_A          277 CLGGFILPWAERLGYP--VPPFD--FRLEGVTSVSADTHKYGY-GAKGTSVI--LYRRPDLLH----YQYFIAADWPGGL  345 (514)
T ss_dssp             TTTTTTHHHHHHTTCC--CCCCS--TTSTTCCEEEECTTTTTC-CCSSCEEE--EESSHHHHT----TTCEEESSCTTCS
T ss_pred             ccccccchhHHhcCCC--CCccc--ccCCCCcEEEECchhccC-CCCCeEEE--EEeCHHHhc----cccccccccCCCc
Confidence            99877531     000  00000  011234688899999864 67889999  577543221    1100000      


Q ss_pred             ---c-ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec--CCC
Q 015435          288 ---P-MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT--GLN  361 (407)
Q Consensus       288 ---~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~  361 (407)
                         . ...+.+.....++..++....     ...+++..+++.++++++.+.|++.+.   +.+..+..+++.+.  +.+
T Consensus       346 ~~~~~~~gs~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~  417 (514)
T 3mad_A          346 YFSPTFAGSRPGALSATAWAAMLSLG-----EEGYLDATRRILQAADRLKAGVRAIPS---LKILGDPLWVIAVASDELN  417 (514)
T ss_dssp             EEESSSCSSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTT---CEESSCCSSEEEEECSSSC
T ss_pred             ccCCccCCCCchHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhhCCC---eEEeCCCeEEEEEeCCCCC
Confidence               0 011222222222222222111     134667788888999999999998742   66665555544443  346


Q ss_pred             HHHHHHhHhhccEEEcCC---C--eEEecC--CCCCChhHHHHHHHHHHHhh
Q 015435          362 SEQVAFMTKEYHIYMTSD---G--RISMAG--LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       362 ~~~~~~~l~~~gi~~~~g---g--Ris~~~--~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ...+.+.|.++||.+...   +  |+++..  .+++++++++++|+++++++
T Consensus       418 ~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~  469 (514)
T 3mad_A          418 IYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQV  469 (514)
T ss_dssp             HHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            666666666679887321   1  888763  35689999999999998653

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.94  E-value=2.2e-25  Score=212.01  Aligned_cols=312  Identities=12%  Similarity=0.078  Sum_probs=209.6

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCccc
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTG  111 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~  111 (407)
                      +.|+|+.  |   .   .|+.+++++.+.+.  .   ..|.+..+..++++++++++ +.       +++++  |+||++
T Consensus         9 ~~i~~~~--p---~---~~~~~~~a~~~~~~--~---~~~~~~~~~~~l~~~la~~~-~~-------~~~~~--~~~gt~   65 (393)
T 1mdo_A            9 DFLPFSR--P---A---MGAEELAAVKTVLD--S---GWITTGPKNQELEAAFCRLT-GN-------QYAVA--VSSATA   65 (393)
T ss_dssp             CCBCSCC--C---C---CCHHHHHHHHHHHH--H---TCCSSSHHHHHHHHHHHHHH-CC-------SEEEE--ESCHHH
T ss_pred             cccccCC--C---C---CCHHHHHHHHHHHh--c---CCcCCChHHHHHHHHHHHHh-CC-------CcEEE--ecChHH
Confidence            5677774  3   2   24556666655554  1   12445678999999999999 53       57888  999999


Q ss_pred             HHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435          112 SLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP  190 (407)
Q Consensus       112 a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP  190 (407)
                      ++.+++  ... +.+||+|+++.|+|..+...++..|.+++.++++ ++++.+|++++++.+.  ++++++++    .||
T Consensus        66 al~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~--~~~~~v~~----~~~  136 (393)
T 1mdo_A           66 GMHIAL--MALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVD-RDTLMVTPEHIEAAIT--PQTKAIIP----VHY  136 (393)
T ss_dssp             HHHHHH--HHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCC--TTEEEECC----BCG
T ss_pred             HHHHHH--HHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEecc-CCcCCCCHHHHHHhcC--CCceEEEE----eCC
Confidence            999994  334 5799999999999999999999999999999983 4456799999999987  44555554    358


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCceeeeccccccc-cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435          191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGF-ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC  269 (407)
Q Consensus       191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~  269 (407)
                      ||.+.   ++++|.++|+++|+++|+|++|+.+ .+.+   ..     + ..  ..+++.|+||..+++|.|+||+  ++
T Consensus       137 ~G~~~---~~~~i~~l~~~~~~~li~D~a~~~g~~~~~---~~-----~-~~--~d~~~~S~~k~K~l~~~~~g~~--~~  200 (393)
T 1mdo_A          137 AGAPA---DLDAIYALGERYGIPVIEDAAHATGTSYKG---RH-----I-GA--RGTAIFSFHAIKNITCAEGGIV--VT  200 (393)
T ss_dssp             GGCCC---CHHHHHHHHHHHTCCBCEECTTCTTCEETT---EE-----T-TS--SSEEEEECCTTSSSCSSSCEEE--EE
T ss_pred             CCCcC---CHHHHHHHHHHcCCeEEEECccccCCeECC---ee-----c-CC--CCeEEEeCCCCCccccccceEE--Ee
Confidence            99976   4888888899999999999999853 3321   11     1 11  5788999994444455688998  57


Q ss_pred             cChhhHHHHHHHHhhhhh-----------ccc---------CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 015435          270 KTEDVASRVESQLKLVIR-----------PMY---------SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMR  329 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~-----------~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  329 (407)
                      +++++.+++.........           .+.         ...+.+.+.++...++          .+++..++.++++
T Consensus       201 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~----------~~~~~~~~~~~~~  270 (393)
T 1mdo_A          201 DNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ----------KLDALNARRAAIA  270 (393)
T ss_dssp             SCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH----------THHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence            667766665442211100           000         0123333333222222          2344555666788


Q ss_pred             HHHHHHHHhcCCCCCcccc-cC-----CceeEEecC-------CCHHHHHHhHhhccEEEcCC-----------------
Q 015435          330 QQLFDALSARGTPGDWSHI-IK-----QIGMFTFTG-------LNSEQVAFMTKEYHIYMTSD-----------------  379 (407)
Q Consensus       330 ~~l~~~l~~~~~~~~~~~~-~~-----~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~g-----------------  379 (407)
                      +++.+.|++.+    +.+. .+     .++++.|+.       .+.+.+.+.|.++||.+.++                 
T Consensus       271 ~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~  346 (393)
T 1mdo_A          271 AQYHQAMADLP----FQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTL  346 (393)
T ss_dssp             HHHHHHHHTSS----CEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTC
T ss_pred             HHHHHHHhcCC----cccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCcc
Confidence            88999998876    3332 11     344445543       35556666666689987652                 


Q ss_pred             -----------C-eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          380 -----------G-RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       380 -----------g-Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                                 . ||++.. .+++|+++++++|+++++.
T Consensus       347 ~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~  385 (393)
T 1mdo_A          347 TLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQ  385 (393)
T ss_dssp             CCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             CChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence                       1 666653 4789999999999998754

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.94  E-value=1e-25  Score=212.79  Aligned_cols=317  Identities=9%  Similarity=0.019  Sum_probs=207.9

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      ..++|++.|.+      +.+. +.+++.+.+.     ...|.+..+..++++.+++++ +.       +++++  ++||+
T Consensus         6 ~~~~~l~~~~~------~~~~-~~~~~~~~~~-----~~~~~~~~~~~~l~~~la~~~-~~-------~~~~~--~~~gt   63 (374)
T 3uwc_A            6 VPYSYLERQFA------DIEP-YLNDLREFIK-----TADFTLGAELEKFEKRFAALH-NA-------PHAIG--VGTGT   63 (374)
T ss_dssp             BCSCCHHHHTS------SCHH-HHHHHHHHHH-----HTCCSSCHHHHHHHHHHHHHT-TC-------SEEEE--ESCHH
T ss_pred             ceeeccccCCC------CchH-HHHHHHHHHH-----cCCcccChhHHHHHHHHHHHh-CC-------CcEEE--eCCHH
Confidence            35677777753      2222 4444444443     234777889999999999998 43       47888  99999


Q ss_pred             cHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          111 GSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       111 ~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      +++.+++  ... +.+||+|+++.|+|..+...++..|.+++.++.+  .++.+|++++++.+.  +++++++    |+|
T Consensus        64 ~a~~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~--~~~~~v~----~~n  133 (374)
T 3uwc_A           64 DALAMSF--KMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAIT--DKTKAIM----PVH  133 (374)
T ss_dssp             HHHHHHH--HHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCC--TTEEEEC----CBC
T ss_pred             HHHHHHH--HHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCC--CCceEEE----EeC
Confidence            9999884  444 6799999999999999999999999999999983  567899999999886  4444433    789


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecC--ccccccCCCcceeEE
Q 015435          190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA--KNMGLYGERVGALSI  267 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~G~r~G~~~~  267 (407)
                      |||.+.+   +++|+++|++||+++|+|++|..+..-+.  ..     +..  ...+++.|+|  |.++.+|. .|++  
T Consensus       134 ~~G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~--~~-----~~~--~~d~~~~s~~~~K~l~~~g~-~g~~--  198 (374)
T 3uwc_A          134 YTGNIAD---MPALAKIAKKHNLHIVEDACQTILGRIND--KF-----VGS--WGQFACFSLHPLKNLNVWSD-AGVI--  198 (374)
T ss_dssp             GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETT--EE-----TTS--SSSEEEEECSSSSSSCCSSC-CEEE--
T ss_pred             CcCCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCC--ee-----ccc--cccEEEEeCCCCCcCCccce-eEEE--
Confidence            9999765   78888889999999999999975432110  10     011  1246677766  99985465 6777  


Q ss_pred             eecChhhHHHHHHHHhhhhh--------cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435          268 VCKTEDVASRVESQLKLVIR--------PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR  339 (407)
Q Consensus       268 v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  339 (407)
                      +++++++.+.+.........        ......+.+.+.+....+          +.+++..++.+++.+++.+.|++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~~~l~~~l~~~  268 (374)
T 3uwc_A          199 ITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM----------NQLETITEKRRGIAHLYDQSFVDL  268 (374)
T ss_dssp             EESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG----------GGHHHHHHHHHHHHHHHHHHTGGG
T ss_pred             EeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccC
Confidence            67776665554432211110        000111222222222111          123456667778888888888876


Q ss_pred             CCCCCcccc-cCCceeEEe-----cCCCHHHHHHhHhhccEEEcCCC-------------------------------eE
Q 015435          340 GTPGDWSHI-IKQIGMFTF-----TGLNSEQVAFMTKEYHIYMTSDG-------------------------------RI  382 (407)
Q Consensus       340 ~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~l~~~gi~~~~gg-------------------------------Ri  382 (407)
                      +..  +.+. .+.++...|     ...+.+.+.+.|.++||.+.++.                               ||
T Consensus       269 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl  346 (374)
T 3uwc_A          269 SEF--IDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITL  346 (374)
T ss_dssp             TTT--EECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEE
T ss_pred             CCe--EEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEc
Confidence            510  1111 122222221     12256666666777899887641                               56


Q ss_pred             EecC-CCCCChhHHHHHHHHHHHhh
Q 015435          383 SMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       383 s~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++.. .+++|++++++.|++++++.
T Consensus       347 ~~~~~~t~edi~~~~~~l~~~l~~~  371 (374)
T 3uwc_A          347 PAHPYLTEEEINYIIKKVREFYLEK  371 (374)
T ss_dssp             CCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhh
Confidence            5543 57899999999999999764

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.94  E-value=5.3e-26  Score=219.76  Aligned_cols=234  Identities=16%  Similarity=0.136  Sum_probs=159.7

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhc-cccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN-DQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      .++|+++.|.  ++++ +.|+++.++....... .....+.|+ ..|.+ +++++++++....+.    +++++  ++||
T Consensus        89 ~~~i~l~~g~--~~~~-~~~~~i~~a~~~~~~~~~~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~--~~sG  157 (464)
T 1ibj_A           89 TLLVNLDNKF--DPFD-AMSTPLYQTATFKQPSAIENGPYDYT-RSGNP-TRDALESLLAKLDKA----DRAFC--FTSG  157 (464)
T ss_dssp             HHHTCCCCSS--CTTC-CSSCCCCCCSBCCCSSSSCCCSCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEE--ESSH
T ss_pred             CeEEECCCCC--CCCC-CCCccHHhhhhhhhhcccccCCcccc-CCCCH-HHHHHHHHHHHHhCC----CeEEE--ECCH
Confidence            4578888871  2356 6666666554322110 012234565 34444 455555554222221    57878  8888


Q ss_pred             ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEec
Q 015435          110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA  185 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~  185 (407)
                      ++++.+++   ..+.+||+|++++|+|..+...    ++..|.+++.++.       .|++++++++.  ++++++++ +
T Consensus       158 t~al~~~l---~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~-------~d~~~l~~~i~--~~tk~v~l-~  224 (464)
T 1ibj_A          158 MAALSAVT---HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-------TKLDEVAAAIG--PQTKLVWL-E  224 (464)
T ss_dssp             HHHHHHHH---TTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT-------TSHHHHHHHCC--SSEEEEEE-C
T ss_pred             HHHHHHHH---HHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHHhc--cCceEEEE-e
Confidence            99998773   4578999999999999988764    4678999988876       28899999887  56677776 9


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc-cCCCcce
Q 015435          186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL-YGERVGA  264 (407)
Q Consensus       186 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~r~G~  264 (407)
                      +|+||||.+++   +++|+++|++||+++|+|++|......    .  ++    . .+..++++|+||.++. .|+|+||
T Consensus       225 ~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g~~~----~--~~----~-~~~div~~S~sK~~~g~~Gl~~G~  290 (464)
T 1ibj_A          225 SPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLS----R--PL----E-LGADIVMHSATKFIAGHSDVMAGV  290 (464)
T ss_dssp             SSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTC----C--GG----G-TTCSEEEEETTTTTTCSSCCCCEE
T ss_pred             CCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcccccC----C--hh----h-cCCEEEEECCcccccCCCCCcEEE
Confidence            99999999985   888999999999999999999753221    0  11    1 2568999999999875 4899999


Q ss_pred             eEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435          265 LSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       265 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                      +  +++++++.+.+.    ........+.+...+.++...++..
T Consensus       291 l--~~~~~~l~~~l~----~~~~~~g~~~~~~~~~a~~~al~~~  328 (464)
T 1ibj_A          291 L--AVKGEKLAKEVY----FLQNSEGSGLAPFDCWLCLRGIKTM  328 (464)
T ss_dssp             E--EECSHHHHHHHH----HHHHHTTCBCCHHHHHHHHHHHTTH
T ss_pred             E--EEChHHHHHHHH----HHHHhcCCCCCHHHHHHHHhchhhH
Confidence            9  577555544443    3332233456777888877777754

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.94  E-value=1.1e-25  Score=214.08  Aligned_cols=315  Identities=14%  Similarity=0.038  Sum_probs=203.2

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCC-CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL-PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      -+++++++.|.|      +.++.+.+++.+.+.  .   ..|. +..+..++++++++++ +.       +++++  ++|
T Consensus        21 ~~~~~~l~~~~p------~~~~~~~~a~~~~~~--~---~~~~~~~~~~~~l~~~la~~~-~~-------~~~i~--~~~   79 (391)
T 3dr4_A           21 MSDLPRISVAAP------RLDGNERDYVLECMD--T---TWISSVGRFIVEFEKAFADYC-GV-------KHAIA--CNN   79 (391)
T ss_dssp             -------CCCCC------CCCSSHHHHHHHHHH--H---TCCSSCSHHHHHHHHHHHHHH-TC-------SEEEE--ESS
T ss_pred             cCCCceeccCCC------CCCHHHHHHHHHHHH--c---CCccCCChHHHHHHHHHHHHh-CC-------CcEEE--eCC
Confidence            367888887764      334566666665554  1   2355 6778999999999998 53       47888  999


Q ss_pred             cccHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435          109 GTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA  187 (407)
Q Consensus       109 ~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p  187 (407)
                      ||+++.+++  ... +.+||+|+++.|+|..+...++..|.+++.++++ ++++.+|++++++.+.  +++++++    +
T Consensus        80 gt~al~~~l--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~--~~~~~v~----~  150 (391)
T 3dr4_A           80 GTTALHLAL--VAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDND-PRTFNLDAAKLEALIT--PRTKAIM----P  150 (391)
T ss_dssp             HHHHHHHHH--HHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCGGGSGGGCC--TTEEEEC----C
T ss_pred             HHHHHHHHH--HHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecC-ccccCcCHHHHHHhcC--CCceEEE----E
Confidence            999999984  444 6789999999999999999999999999999983 4567899999999886  4444444    4


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCceeeecccccccc-CCCCCchhHHHHHHHHcCCcEEEEEecC--ccccccCCCcce
Q 015435          188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFA-SGSLDADAQSVRMFVADGGECLVAQSYA--KNMGLYGERVGA  264 (407)
Q Consensus       188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~G~r~G~  264 (407)
                      +||||...   ++++|+++|++||+++|+|++|+... +.+.  .      .....  .+.+.|||  |.++  |.+.|+
T Consensus       151 ~n~tG~~~---~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~--~------~~~~~--di~~~S~s~~K~l~--~g~gg~  215 (391)
T 3dr4_A          151 VHLYGQIC---DMDPILEVARRHNLLVIEDAAEAVGATYRGK--K------SGSLG--DCATFSFFGNAIIT--TGEGGM  215 (391)
T ss_dssp             BCGGGCCC---CHHHHHHHHHHTTCEEEEECTTCTTCEETTE--E------TTSSS--SEEEEECBTTSSSC--CBSCEE
T ss_pred             ECCCCChh---hHHHHHHHHHHcCCEEEEECcccccceECCe--e------ecccC--CEEEEECCCCCcCC--cCCeEE
Confidence            68999965   47888888999999999999987533 2211  0      00111  26677766  6664  456788


Q ss_pred             eEEeecChhhHHHHHHHHhhhhh----cc----cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          265 LSIVCKTEDVASRVESQLKLVIR----PM----YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL  336 (407)
Q Consensus       265 ~~~v~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  336 (407)
                      +  +++++++.+.+.........    ..    ..+.....+.++......        +.+++..++.+++++++.+.|
T Consensus       216 ~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~--------~~~~~~~~~~~~~~~~l~~~L  285 (391)
T 3dr4_A          216 I--TTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQL--------ERVDEHLAARERVVGWYEQKL  285 (391)
T ss_dssp             E--EESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHH--------HTHHHHHHHHHHHHHHHHHHH
T ss_pred             E--EECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHh
Confidence            8  67776665554432211110    00    001111222222222211        224556677778888899999


Q ss_pred             HhcCCCCCcccccC------Ccee--EEe-c----CCCHHHHHHhHhhccEEEcCCC-----------------------
Q 015435          337 SARGTPGDWSHIIK------QIGM--FTF-T----GLNSEQVAFMTKEYHIYMTSDG-----------------------  380 (407)
Q Consensus       337 ~~~~~~~~~~~~~~------~~~~--~~~-~----~~~~~~~~~~l~~~gi~~~~gg-----------------------  380 (407)
                      ++.+    +.+..+      ..++  +.+ +    +.+.+.+.+.|.++||.+.++.                       
T Consensus       286 ~~~g----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~  361 (391)
T 3dr4_A          286 ARLG----NRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEAC  361 (391)
T ss_dssp             GGGT----TSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHH
T ss_pred             hcCC----ccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHH
Confidence            8875    333322      1221  221 1    2356667766777899887651                       


Q ss_pred             -----eEEecC-CCCCChhHHHHHHHHHH
Q 015435          381 -----RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       381 -----Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                           ||++.. .+++|++++++.|++++
T Consensus       362 ~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          362 GVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             HHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             HhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                 565543 57899999999998754

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.94  E-value=1.5e-25  Score=210.46  Aligned_cols=310  Identities=11%  Similarity=0.052  Sum_probs=199.1

Q ss_pred             cccchhHHHHHHHHhcccc-ccccCCCC--CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhc
Q 015435           48 PLVLNVVRKAEQLLVNDQS-RVKEYLPI--VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY  124 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~-~~~~y~~~--~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~  124 (407)
                      +.|+.+++++.+.+. +.. ....+.+.  .-..++++.+++++ +..    +++++++  |+|+++++.+++  .....
T Consensus        14 ~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~----~~~~v~~--~~g~t~al~~~~--~~l~~   83 (362)
T 3ffr_A           14 ELYPTVRQHMITALD-EKIGVISHRSKKFEEVYKTASDNLKTLL-ELP----SNYEVLF--LASATEIWERII--QNCVE   83 (362)
T ss_dssp             CCCTTHHHHHHHHHH-TTTTTSCTTSHHHHHHHHHHHHHHHHHT-TCC----TTEEEEE--ESCHHHHHHHHH--HHHCS
T ss_pred             CCCHHHHHHHHHHhc-CCccCcCCCCHHHHHHHHHHHHHHHHHh-CCC----CCcEEEE--eCCchHHHHHHH--HhccC
Confidence            456677777777775 221 01112121  12445566666665 321    2478999  999999999994  33355


Q ss_pred             CCCeEEecCCCCC-ChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435          125 HQLTIYIPQPTWG-NHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI  203 (407)
Q Consensus       125 ~gd~Vi~~~p~y~-~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i  203 (407)
                      + +.+++..+.|. .+...++..|++++.++.  +.++.+|+++++  +.  ++++++++ ++|+||||.+++   +++|
T Consensus        84 ~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~--~~--~~~~~v~~-~~~~nptG~~~~---l~~i  152 (362)
T 3ffr_A           84 K-KSFHCVNGSFSKRFYEFAGELGREAYKEEA--AFGKGFYPADIT--VP--ADAEIICL-THNETSSGVSMP---VEDI  152 (362)
T ss_dssp             S-EEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCGGGCC--CC--TTCCEEEE-ESEETTTTEECC---HHHH
T ss_pred             C-cEEEEcCcHHHHHHHHHHHHhCCCeEEEec--CCCCCCCHHHHh--cc--CCccEEEE-EcCCCCcceeCC---HHHH
Confidence            5 44445555555 233466788999999998  445789999998  43  66788777 799999999987   7778


Q ss_pred             HHHHHHc-CceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccc-ccCCCcceeEEeecChhhHHHHHHH
Q 015435          204 RQLMRSK-GLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMG-LYGERVGALSIVCKTEDVASRVESQ  281 (407)
Q Consensus       204 ~~~~~~~-~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~v~~~~~~~~~~~~~  281 (407)
                      +++|++| |+++|+|++|..+... .  +         .....+++.|+||.++ ++|  +|++  +++ +++.+++...
T Consensus       153 ~~la~~~p~~~li~D~a~~~~~~~-~--~---------~~~~d~~~~s~~K~~~~~~G--~g~~--~~~-~~~~~~~~~~  215 (362)
T 3ffr_A          153 NTFRDKNKDALIFVDAVSSLPYPK-F--D---------WTKIDSVFFSVQKCFGLPAG--LGVW--ILN-DRVIEKSKAL  215 (362)
T ss_dssp             TTSGGGSTTSEEEEECTTTTTSSC-C--C---------TTSCSEEEEETTSTTCCCSC--CEEE--EEE-HHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEecccccCCcc-c--C---------hhHCcEEEEecccccCCCCc--eEEE--EEC-HHHHHHhhhc
Confidence            8889999 9999999998755432 1  1         0114588899999998 677  4666  344 4444443332


Q ss_pred             Hh----------------hhh-hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435          282 LK----------------LVI-RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD  344 (407)
Q Consensus       282 ~~----------------~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  344 (407)
                      ..                ... .....+++..++.++..+++...     ...+++.+++++++++++.+.|++.+.   
T Consensus       216 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g---  287 (362)
T 3ffr_A          216 LAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDML-----QISADGIRKQTEEKAALINTYIESSKV---  287 (362)
T ss_dssp             HHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHCSS---
T ss_pred             cccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHHHHHHccC---
Confidence            11                000 01133566666666655554211     122577888899999999999998832   


Q ss_pred             cccccC----CceeEEecCC--CHHHHHHhHhhccEEEcCC------C--eEEecC-CCCCChhHHHHHHHHHH
Q 015435          345 WSHIIK----QIGMFTFTGL--NSEQVAFMTKEYHIYMTSD------G--RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       345 ~~~~~~----~~~~~~~~~~--~~~~~~~~l~~~gi~~~~g------g--Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      +.+..+    ..+.+.|+.+  +.+.+.+.|.++||.+.+|      +  ||+++. .+++++++++++|++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          288 FSFGVEDAKLRSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             EEESSSCGGGBCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             ceeccCChhhcCCceEEEecCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            554431    2233333322  5555555555579999875      2  999864 46788999999998764

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.93  E-value=6.4e-26  Score=212.94  Aligned_cols=287  Identities=14%  Similarity=0.057  Sum_probs=183.9

Q ss_pred             cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC--eEEecCCCCCChHH---H
Q 015435           68 VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL--TIYIPQPTWGNHPK---V  142 (407)
Q Consensus        68 ~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd--~Vi~~~p~y~~~~~---~  142 (407)
                      ...|++..+..++++++++++ +.       +..++  ++||++++.+++  ...+.+||  .|+++.++|.....   .
T Consensus        40 ~~~y~~~~~~~~l~~~la~~~-~~-------~~~i~--~~~G~~a~~~al--~~~~~~gd~~~vi~~~~~~~~~~~~~~~  107 (357)
T 3lws_A           40 SDQYGTGAIIEPFEQKFADVL-GM-------DDAVF--FPSGTMAQQVAL--RIWSDETDNRTVAYHPLCHLEIHEQDGL  107 (357)
T ss_dssp             CEETTEETTHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHHHHHHTCCEEEECTTCHHHHSSTTHH
T ss_pred             cccccCChHHHHHHHHHHHHh-CC-------CcEEE--ecCcHHHHHHHH--HHHhhcCCCcEEEecccceeeeeccchh
Confidence            345776778999999999988 53       34566  778888998874  33456777  67776665443322   3


Q ss_pred             HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeeccccc
Q 015435          143 FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ  221 (407)
Q Consensus       143 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D~~y~  221 (407)
                      ....|.+++.++.   +++.+|+++++++    ++++++++ ++||||| |.+++.+++++|+++|++||++||+|++|.
T Consensus       108 ~~~~g~~~~~v~~---~~~~~d~~~l~~~----~~~~~v~~-~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~  179 (357)
T 3lws_A          108 KELHPIETILVGA---ADRLMTLDEIKAL----PDIACLLL-ELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARL  179 (357)
T ss_dssp             HHHSSCEEEECSC---TTSCCCHHHHHTC----CSCSEEEE-ESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTH
T ss_pred             hhccCcEEEEecC---CCCCcCHHHHhcC----cCcceEEE-EcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchh
Confidence            4566888888864   3457999999876    23677766 8999998 999999999999999999999999999975


Q ss_pred             cc--cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCC--ChhH
Q 015435          222 GF--ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSP--PIHG  297 (407)
Q Consensus       222 ~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  297 (407)
                      ..  ...+.     +...+....+  +++.|+||.++.++  .||+   +.++++.+.+    .........+.  ....
T Consensus       180 ~~~~~~~~~-----~~~~~~~~~d--~~~~s~sK~~~~~~--gg~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~  243 (357)
T 3lws_A          180 FEMLPYYEK-----TAAEIAGLFD--SIYISFYKGLGGIA--GAIL---AGPAAFCQTA----RIWKRRYGGDLISLYPY  243 (357)
T ss_dssp             HHHHHHHTC-----CHHHHHTTSS--EEEEESSSTTCCSS--CEEE---EECHHHHHHH----HHHHHHTTCCCSCCHHH
T ss_pred             hhhhhhcCC-----ChHHHHhcCC--EEEEeccccCCCCc--eEEE---EcCHHHHHHH----HHHHHHhcCCcccchHH
Confidence            21  11111     1112222222  44789999994332  2777   4455544443    33322222122  2222


Q ss_pred             HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccCCceeEEecCC--C----HHHHHHhHh
Q 015435          298 ASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH-IIKQIGMFTFTGL--N----SEQVAFMTK  370 (407)
Q Consensus       298 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~--~----~~~~~~~l~  370 (407)
                      +.++...++         +..+. .+++.++++++.+.|++++.   +.+ ..+..++|.|+.+  .    .+.+.+.|.
T Consensus       244 ~~~~~~~l~---------~~~~~-~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  310 (357)
T 3lws_A          244 IVSADYYYE---------LRKDR-MGQYYEQAKQLAEQFNALPG---VHTTPEVPVSNMFHLHFDGQAADISPKLEQVQE  310 (357)
T ss_dssp             HHHHHHHHH---------HHTTC-HHHHHHHHHHHHHHHHTSTT---EEEESSSCSSSEEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---------HHHHH-HHHHHHHHHHHHHHHHhCCC---CeeccCCCcceEEEEEecCChHHHHHHHHHHHH
Confidence            333333332         11222 23356778899999988732   665 3455666777744  2    345666777


Q ss_pred             hccEEEcCCC---------eEEecC----CCCCChhHHHHHHHHHH
Q 015435          371 EYHIYMTSDG---------RISMAG----LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       371 ~~gi~~~~gg---------Ris~~~----~~~e~i~~~~~~l~~~l  403 (407)
                      ++||.+.|+.         |++++.    .+++++++++++|.+++
T Consensus       311 ~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          311 ETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             HHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             hcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence            7999999862         777652    25567788888877654

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.93  E-value=1.2e-24  Score=208.77  Aligned_cols=310  Identities=17%  Similarity=0.065  Sum_probs=203.6

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCCC----cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVG----LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-  122 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g----~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-  122 (407)
                      +.++.+.+++.+.+.  ......|++..|    ..++++.+++++ +.       +++++  ++|||+++.+++  ... 
T Consensus        13 ~~~~~~~~a~~~~~~--~~~~~~~~~~~g~~~l~~~l~~~la~~~-g~-------~~~i~--~~~gt~al~~~~--~~~~   78 (418)
T 2c81_A           13 QHSDRTRRKIEEVFQ--SNRWAISGYWTGEESMERKFAKAFADFN-GV-------PYCVP--TTSGSTALMLAL--EALG   78 (418)
T ss_dssp             CCCHHHHHHHHHHHH--HTCCSTTSBCCSSCCHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHTT
T ss_pred             CCCHHHHHHHHHHHh--cCCccccCcccCCHHHHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHcC
Confidence            345666777666665  222334766666    677788888877 43       35677  888899999984  444 


Q ss_pred             hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHH
Q 015435          123 HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQ  202 (407)
Q Consensus       123 ~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~  202 (407)
                      +.+||+|+++.|+|..+...++..|.+++.++++ +.++.+|++++++.+.  ++++++++    +||||..   .++++
T Consensus        79 ~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~--~~~~~v~~----~~~~G~~---~~~~~  148 (418)
T 2c81_A           79 IGEGDEVIVPSLTWIATATAVLNVNALPVFVDVE-ADTYCIDPQLIKSAIT--DKTKAIIP----VHLFGSM---ANMDE  148 (418)
T ss_dssp             CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHGGGCC--TTEEEECC----BCCTTCC---CCHHH
T ss_pred             CCCcCEEEECCCccHhHHHHHHHcCCEEEEEecC-CCCCCcCHHHHHHhhC--CCCeEEEE----eCCcCCc---ccHHH
Confidence            5789999999999999999999999999999983 4467899999999886  44555544    4699985   46888


Q ss_pred             HHHHHHHcCceeeecccccccc-CCCCCchhHHHHHHHHcCCcEEEEEec--CccccccCCCcceeEEeecChhhHHHHH
Q 015435          203 IRQLMRSKGLLPFFDSAYQGFA-SGSLDADAQSVRMFVADGGECLVAQSY--AKNMGLYGERVGALSIVCKTEDVASRVE  279 (407)
Q Consensus       203 i~~~~~~~~~~li~D~~y~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~r~G~~~~v~~~~~~~~~~~  279 (407)
                      |+++|++||+++|+|++|+.+. +++.  .      +....  .+.+.||  ||.++. | |+||+  +++++++.+++.
T Consensus       149 i~~~~~~~~~~li~D~a~~~~~~~~~~--~------~~~~~--~~~~~s~s~~K~~~~-g-~~g~~--~~~~~~l~~~~~  214 (418)
T 2c81_A          149 INEIAQEHNLFVIEDCAQSHGSVWNNQ--R------AGTIG--DIGAFSCQQGKVLTA-G-EGGII--VTKNPRLFELIQ  214 (418)
T ss_dssp             HHHHHHHTTCEEEEECTTCTTCEETTE--E------TTSSS--SEEEEECCTTSSSCS-S-SCEEE--EESCHHHHHHHH
T ss_pred             HHHHHHHCCCEEEEECcccccCccCCE--e------ccccc--ceEEEeccCCcccCC-C-CeEEE--EECCHHHHHHHH
Confidence            8999999999999999998876 4321  1      11111  2667777  999996 8 99998  676677666554


Q ss_pred             HHHhhhhhc---------ccCC----CChh-------HHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435          280 SQLKLVIRP---------MYSS----PPIH-------GASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR  339 (407)
Q Consensus       280 ~~~~~~~~~---------~~~~----~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  339 (407)
                      .........         .+..    +..+       ...++.. +...       +.+++..++.+++++++.+.|+++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~-~~~l-------~~~~~~~~~~~~~~~~l~~~L~~~  286 (418)
T 2c81_A          215 QLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAIL-LDQL-------QELDDKNAIREKNAMFLNDALSKI  286 (418)
T ss_dssp             HHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHH-HHHH-------TTHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHhccC
Confidence            422211100         0000    0110       0111111 1000       124456666777888999999876


Q ss_pred             CCCCCcccc-cCCc-eeE---E----ec-----CCCHHHHHHhHhhc-cEE---EcCC----------------------
Q 015435          340 GTPGDWSHI-IKQI-GMF---T----FT-----GLNSEQVAFMTKEY-HIY---MTSD----------------------  379 (407)
Q Consensus       340 ~~~~~~~~~-~~~~-~~~---~----~~-----~~~~~~~~~~l~~~-gi~---~~~g----------------------  379 (407)
                      +.   +.+. .+.+ +..   .    +.     +.+.+.+.+.|.++ ||.   +.++                      
T Consensus       287 ~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~  363 (418)
T 2c81_A          287 DG---IKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSV  363 (418)
T ss_dssp             TT---EEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHH
T ss_pred             CC---cccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccc
Confidence            32   5554 3444 221   1    11     24566665555555 998   6532                      


Q ss_pred             --------------------C--eEEecC-C-CCCChhHHHHHHHHHHHhh
Q 015435          380 --------------------G--RISMAG-L-SSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 --------------------g--Ris~~~-~-~~e~i~~~~~~l~~~l~~~  406 (407)
                                          +  ||++.. . +++|++++++.|+++++++
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~  414 (418)
T 2c81_A          364 RKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF  414 (418)
T ss_dssp             HCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence                                1  777753 5 7899999999999998765

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.93  E-value=6.8e-25  Score=210.21  Aligned_cols=325  Identities=13%  Similarity=0.100  Sum_probs=205.9

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc--c-cCC--CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV--K-EYL--PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~y~--~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ++.+.|..+.    .+ +.|+.+.+++.+.+.+.....  . .|.  ......++++.+++++ +.     ++++|++  
T Consensus        27 ~~~~yld~~~----~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~-----~~~~v~~--   93 (416)
T 1qz9_A           27 EGVIYLDGNS----LG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI-GA-----RDGEVVV--   93 (416)
T ss_dssp             TTCEECCTTT----SC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT-TC-----CTTSEEE--
T ss_pred             CCeEeecCCC----cC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc-CC-----CcccEEE--
Confidence            3456666554    24 567777777777775110000  0 111  1234567888888876 42     3478999  


Q ss_pred             cCCcccHHHHHHHHHHhh----cCCCeEEec-CCCCCChHHHHh----hc--CceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435          106 CLSGTGSLRVGAEFLARH----YHQLTIYIP-QPTWGNHPKVFT----LA--GLSVKTYRYYDPATRGLNFQGLLEDLRA  174 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~----~~gd~Vi~~-~p~y~~~~~~~~----~~--G~~~~~v~~~~~~~~~~d~~~l~~~i~~  174 (407)
                      |+|+++++.+++..+..+    .+||+|++. .++|+.+...+.    ..  |.+++.++.         ++++++.+. 
T Consensus        94 ~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~-  163 (416)
T 1qz9_A           94 TDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAID-  163 (416)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCS-
T ss_pred             eCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhC-
Confidence            999999998775443223    789975544 557775554432    23  888888754         688888886 


Q ss_pred             CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435          175 APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN  254 (407)
Q Consensus       175 ~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
                       ++++++++ ++|+||||.+.+   +++|+++|++||+++|+|++|.... ...  +   +..+    +..+++.|++|.
T Consensus       164 -~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~-~~~--~---~~~~----~~d~~~~s~~K~  228 (416)
T 1qz9_A          164 -QDTAVVML-THVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGA-VPV--D---LHQA----GADYAIGCTYKY  228 (416)
T ss_dssp             -TTEEEEEE-ESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTT-SCC--C---HHHH----TCSEEEECSSST
T ss_pred             -CCceEEEE-eccccCcccccC---HHHHHHHHHHcCCEEEEEccccccC-cCC--C---hhhc----CCCEEEecCccc
Confidence             45566555 999999999887   7888888999999999999986322 111  1   2111    245888999999


Q ss_pred             ccccCCCc-ceeEEeecChhhHHHHHHHHhh-------------------hhhcccCCCChhHHHHHHHHhcChhhHHhH
Q 015435          255 MGLYGERV-GALSIVCKTEDVASRVESQLKL-------------------VIRPMYSSPPIHGASIVATILKDSTMYKEW  314 (407)
Q Consensus       255 ~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  314 (407)
                      ++ +|.++ |++  +++ +++.+.+......                   .......+++..++.++..+++...     
T Consensus       229 l~-~g~~~~g~l--~~~-~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-----  299 (416)
T 1qz9_A          229 LN-GGPGSQAFV--WVS-PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFA-----  299 (416)
T ss_dssp             TC-CCTTCCCEE--EEC-TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHT-----
T ss_pred             CC-CCCCCeEEE--EEC-HHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHH-----
Confidence            75 67888 998  455 3333322211000                   0011122455655655555554211     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCcccccCC----ceeEEecCC-CHHHHHHhHhhccEEEcCC--C--e
Q 015435          315 TLELKAMADRIISMRQQLFDALSAR----GTPGDWSHIIKQ----IGMFTFTGL-NSEQVAFMTKEYHIYMTSD--G--R  381 (407)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~l~~~gi~~~~g--g--R  381 (407)
                      ...+++.+++++++++++.+.|++.    +    +.+..+.    .+.+.++.+ +.+.+.+.|.++||.+...  +  |
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~~~~~~lR  375 (416)
T 1qz9_A          300 QTDMASLRRKSLALTDLFIELVEQRCAAHE----LTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREPRIMR  375 (416)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHTTSC----CEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETTTEEE
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHhhccCCC----eEEeCCCCHHHcCCEEEEecCCHHHHHHHHHhCCcEeccCCCCeEE
Confidence            0235677788889999999999876    4    5554442    233455544 3445555556689988653  2  9


Q ss_pred             EEec--CCCCCChhHHHHHHHHHHHhh
Q 015435          382 ISMA--GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       382 is~~--~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |+++  ..+++++++++++|++++++.
T Consensus       376 is~~~~~~t~~~i~~~~~~l~~~~~~~  402 (416)
T 1qz9_A          376 FGFTPLYTTFTEVWDAVQILGEILDRK  402 (416)
T ss_dssp             EECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             EeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence            9986  358899999999999998753

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.93  E-value=2.2e-24  Score=204.80  Aligned_cols=276  Identities=15%  Similarity=0.156  Sum_probs=191.7

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCce
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGLS  149 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~~  149 (407)
                      .....++++.+++++ +.       ++.++  ++||++++.+++  ...+.+||+|+++.|+|.++...    ++..|.+
T Consensus        58 ~~~~~~l~~~la~~~-g~-------~~~i~--~~sG~~ai~~~~--~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~  125 (389)
T 3acz_A           58 NPTVEQFEEMVCSIE-GA-------AGSAA--FGSGMGAISSST--LAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIE  125 (389)
T ss_dssp             CHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHH--TTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCE
T ss_pred             ChHHHHHHHHHHHHh-CC-------CeEEE--eCCHHHHHHHHH--HHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCE
Confidence            456778999999988 43       35667  778889999884  33467999999999999987665    4678999


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                      ++.++.       .|++++++.+.  ++++++++ ++|+||||.+.+   +++|+++|++||+++|+|++|..+....  
T Consensus       126 ~~~v~~-------~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~--  190 (389)
T 3acz_A          126 VDLIDT-------SDVEKVKAAWK--PNTKMVYL-ESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK--  190 (389)
T ss_dssp             EEEECT-------TCHHHHHHTCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC--
T ss_pred             EEEECC-------CCHHHHHHhcC--CCCeEEEE-ECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC--
Confidence            998865       38899999887  55677666 899999999886   7888888999999999999998766421  


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                        .  +    . ....++++|+||.++.+|.|+ ||+  +++++++.+.+.    ........+.+...+.++...++..
T Consensus       191 --~--~----~-~~~di~~~S~sK~~~~~~~~~~G~v--~~~~~~~~~~l~----~~~~~~g~~~~~~~~~~~~~~l~~l  255 (389)
T 3acz_A          191 --P--L----E-LGADIALHSVSKYINGHGDVIGGVS--SAKTAEDIATIK----FYRKDAGSLMAPMDAFLCARGMKTL  255 (389)
T ss_dssp             --G--G----G-TTCSEEEEETTTTTTCSSCCCCEEE--EESSHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHHTTH
T ss_pred             --c--c----c-cCCeEEEECChhhccCCCCceeEEE--EECcHHHHHHHH----HHHHhcCCCCCHHHHHHHHcCccHH
Confidence              1  1    1 246789999999999999998 888  566435444443    3333233355666666666666543


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Cccccc----CCceeEEecCC-CHHHHHHhHhhc
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSHII----KQIGMFTFTGL-NSEQVAFMTKEY  372 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~~----~~~~~~~~~~~-~~~~~~~~l~~~  372 (407)
                                ....++..++.+.+.+.+++.+.      +.     .+.+..    ..++++.+. + ..+.+..++++.
T Consensus       256 ----------~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~-l~~~~~~~~~l~~~  324 (389)
T 3acz_A          256 ----------PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFE-MKSFEAAKKLMEHL  324 (389)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE-ESSHHHHHHHHTTC
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEE-ECCHHHHHHHHHhC
Confidence                      22233444556666666665421      00     012111    225555543 2 256677888878


Q ss_pred             cEEEcC---C-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          373 HIYMTS---D-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       373 gi~~~~---g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      |+.+.+   |                             +  |||++.   ++.+.+++.|.++++.
T Consensus       325 ~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~~  388 (389)
T 3acz_A          325 KVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALEL  388 (389)
T ss_dssp             SSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHTC
T ss_pred             CCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence            876644   2                             2  777664   6899999999998864

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.93  E-value=6.2e-25  Score=213.86  Aligned_cols=325  Identities=15%  Similarity=0.143  Sum_probs=212.0

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCC---CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLP---IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      ..+.|+ |..    . +..+.+++++...+.    ..+.|.+   ..|..++++++++++....+..   ..+++  |+|
T Consensus        67 ~~~~lg-~~~----~-~~~p~v~~~~~~~~~----~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~---~~~~~--~~g  131 (474)
T 1wyu_B           67 TFYPLG-SCT----M-KYNPKLHEEAARLFA----DLHPYQDPRTAQGALRLMWELGEYLKALTGMD---AITLE--PAA  131 (474)
T ss_dssp             SCCCBT-TTC----C-CCCCHHHHHHHHTTS----SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS---EEECC--CSS
T ss_pred             Cccccc-ccc----c-cCCHHHHHHHHHHHH----hcCCCCchhhChHHHHHHHHHHHHHHHHHCCC---ceeec--ChH
Confidence            456666 432    2 334456655554432    2334543   4565666666666653322221   23556  899


Q ss_pred             cccHHHHHHHHHHh--hcCCC-----eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEE
Q 015435          109 GTGSLRVGAEFLAR--HYHQL-----TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIV  181 (407)
Q Consensus       109 ~t~a~~~~~~~~~~--~~~gd-----~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v  181 (407)
                      |++++..++..+..  ..+||     +|+++.|+|+.+...+...|++++.++.+  .++.+|++++++++.  ++++++
T Consensus       132 gt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~--~~~~~d~~~L~~~i~--~~t~~v  207 (474)
T 1wyu_B          132 GAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG--PEGEVDLEALKRELG--PHVAAL  207 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC--TTSSBCHHHHHHHCS--TTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC--CCCCcCHHHHHHhhC--CCceEE
Confidence            99999886433322  34787     99999999999999999999999999983  357799999999997  556776


Q ss_pred             EEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc-C-
Q 015435          182 LLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY-G-  259 (407)
Q Consensus       182 ~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G-  259 (407)
                      ++ ++| ||||.+.  +++++|+++|++||+++|+|++|..+..+..  .   ...+    ...+++.|++|.++.| | 
T Consensus       208 ~~-~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~--~---~~~~----g~di~~~s~~K~~~~p~g~  274 (474)
T 1wyu_B          208 ML-TNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMGWA--R---PGDM----GFDVVHLNLHKTFTVPHGG  274 (474)
T ss_dssp             EE-CSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTTTC--C---HHHH----TCSEEECCTTTTTCCCCTT
T ss_pred             EE-ECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhccCC--C---cccC----CCcEEEEeCccccccCCCC
Confidence            66 677 6899873  4799999999999999999999976654311  1   1111    3467788999999766 4 


Q ss_pred             --CCcceeEEeecChhhHHHHHHHHhh-h------------------hhcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435          260 --ERVGALSIVCKTEDVASRVESQLKL-V------------------IRPMYSSPPIHGASIVATILKDSTMYKEWTLEL  318 (407)
Q Consensus       260 --~r~G~~~~v~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  318 (407)
                        .|+||+  +++ +++    .+.+.. .                  .+....+.+..++.++..++....     .+.+
T Consensus       275 gG~~~G~~--~~~-~~l----~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g-----~~~l  342 (474)
T 1wyu_B          275 GGPGSGPV--GVK-AHL----APYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG-----LEGL  342 (474)
T ss_dssp             SCCCCCCE--EEC-GGG----GGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH-----HHHH
T ss_pred             CCCCeEEE--EEc-HHH----HHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH-----HHHH
Confidence              599999  566 332    232320 0                  001112345566666666665321     1456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeE-Eec----CCCHHHHHHhHhhccEEEcC-------CC--eEEe
Q 015435          319 KAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMF-TFT----GLNSEQVAFMTKEYHIYMTS-------DG--RISM  384 (407)
Q Consensus       319 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~l~~~gi~~~~-------gg--Ris~  384 (407)
                      ++..+++.++++++.+.|++.+    +.+..+...+. .|+    +.+.+.+.+.|.++||.+..       .+  ||++
T Consensus       343 ~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~  418 (474)
T 1wyu_B          343 KKAAALAVLNARYLKELLKEKG----YRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEP  418 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT----CBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC----cEecCCCCcceEEEEEcCCCCCHHHHHHHHHHCCccccccccccccCCEEEEEe
Confidence            7778889999999999999875    44422222220 222    34555555444456987521       12  8888


Q ss_pred             cC-CCCCChhHHHHHHHHHHH
Q 015435          385 AG-LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       385 ~~-~~~e~i~~~~~~l~~~l~  404 (407)
                      .. .+++++++++++|+++++
T Consensus       419 ~~~~t~e~id~~~~~L~~~~~  439 (474)
T 1wyu_B          419 TETEAKETLEAFAEAMGALLK  439 (474)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHT
T ss_pred             ecCCCHHHHHHHHHHHHHHHH
Confidence            74 367899999999998864

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.93  E-value=9.3e-25  Score=212.56  Aligned_cols=337  Identities=12%  Similarity=0.069  Sum_probs=200.6

Q ss_pred             CCCeeeeeeeee-ecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           30 SPVKLNLGVGAY-RTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        30 ~~~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      +...++++.|.+ .|-.....++.+.+++.+.+.  .. ...|.+..+..++++++++++ +.       +++++  |+|
T Consensus        31 g~~~~~~~~~~~ylD~~~~~~~~~v~~a~~~~l~--~~-~~~y~~~~~~~~l~~~la~~~-~~-------~~v~~--t~~   97 (467)
T 2oqx_A           31 GMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMM--RG-DEAYSGSRSYYALAESVKNIF-GY-------QYTIP--THQ   97 (467)
T ss_dssp             TSCGGGSCGGGCSEECSCCSSCSCCCHHHHHHTT--SC-CCCSSSCHHHHHHHHHHHHHH-CC-------SEEEE--EC-
T ss_pred             CCCceeccCCCeeEecccCCCcHHHHHHHHHHhc--cC-cceeccCchhHHHHHHHHHHh-Cc-------CcEEE--cCC
Confidence            445566665531 111110112556666666654  22 245877788999999999998 53       68999  999


Q ss_pred             cccHHHHHHHHHHhhcC-----C----CeEEecCCCCCChHHHHhhcCceeeEEEee--------cCCCCCcChhhHHHH
Q 015435          109 GTGSLRVGAEFLARHYH-----Q----LTIYIPQPTWGNHPKVFTLAGLSVKTYRYY--------DPATRGLNFQGLLED  171 (407)
Q Consensus       109 ~t~a~~~~~~~~~~~~~-----g----d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~--------~~~~~~~d~~~l~~~  171 (407)
                      ||+|+.++++.+  ..+     |    |+|++..+.|..+.......|..+......        .+.++.+|+++|+++
T Consensus        98 gt~A~~~al~~~--~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~  175 (467)
T 2oqx_A           98 GRGAEQIYIPVL--IKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERG  175 (467)
T ss_dssp             -CCSHHHHHHHH--HHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHH
T ss_pred             cHHHHHHHHHHH--hccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHH
Confidence            999999996554  455     7    888877444444455555666665543211        012346899999999


Q ss_pred             HHcC--CCCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeecccccc----------ccCCCCCchhHHHHH-
Q 015435          172 LRAA--PSGAIVLLHACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG----------FASGSLDADAQSVRM-  237 (407)
Q Consensus       172 i~~~--~~~~~v~i~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~----------~~~~~~~~~~~~~~~-  237 (407)
                      +.+.  ++++++++ ++|+||| |.+++.+++++|+++|++||++||+|+++..          ..+.+.  ....+.. 
T Consensus       176 i~~~~~~~~~~vi~-~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~--~~~~~~~~  252 (467)
T 2oqx_A          176 IEEVGPNNVPYIVA-TITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW--TIEQITRE  252 (467)
T ss_dssp             HHHHCGGGCCCEEE-ESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS--CHHHHHHH
T ss_pred             HHhcCCCceeEEEE-eccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCc--cHHHHhhh
Confidence            9742  24677776 7899998 9999999999999999999999999965432          123222  1111110 


Q ss_pred             HHHcCCcEEEEEecCcccccc-CCCcceeEEeecCh---hhHHHHHHHHhhhhhcccCC-CChhHHHHHHHHhcChhhHH
Q 015435          238 FVADGGECLVAQSYAKNMGLY-GERVGALSIVCKTE---DVASRVESQLKLVIRPMYSS-PPIHGASIVATILKDSTMYK  312 (407)
Q Consensus       238 ~~~~~~~~i~~~s~sK~~~~~-G~r~G~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~  312 (407)
                      .....+  +++.|+||.++++ |   ||+  +++++   +....+.............+ .+..++.++...++      
T Consensus       253 ~~~~~d--~~~~s~sK~~g~~~G---g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~------  319 (467)
T 2oqx_A          253 TYKYAD--MLAMSAKKDAMVPMG---GLL--CMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY------  319 (467)
T ss_dssp             HGGGCS--EEEEESSSTTCCSSC---EEE--EECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH------
T ss_pred             hhccCC--eEEEecccccCCCCc---eEE--EecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhH------
Confidence            002223  4578999999865 3   566  45544   22232222110110000111 12212211111111      


Q ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-------C-----HHH-HHHhHhhccEEEcC
Q 015435          313 EWTLEL-KAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-------N-----SEQ-VAFMTKEYHIYMTS  378 (407)
Q Consensus       313 ~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~-~~~~l~~~gi~~~~  378 (407)
                         +.+ +...++..++++++.+.|++.+    +.+. +.++++.|+.+       +     .+. ...++.++||.+.|
T Consensus       320 ---~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~  391 (467)
T 2oqx_A          320 ---DGMNLDWLAYRIAQVQYLVDGLEEIG----VVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVE  391 (467)
T ss_dssp             ---HTTCHHHHHHHHHHHHHHHHHHHHTT----CCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEE
T ss_pred             ---hhhhHHHHHHHHHHHHHHHHHHHHCC----Ceee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecc
Confidence               111 1223445677888899998875    5555 56666666543       2     122 34443778999875


Q ss_pred             -C------------------C--eEEecC--CCCCChhHHHHHHHHHHHh
Q 015435          379 -D------------------G--RISMAG--LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       379 -g------------------g--Ris~~~--~~~e~i~~~~~~l~~~l~~  405 (407)
                       +                  +  ||+++.  .+++++++++++|++++++
T Consensus       392 ~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~  441 (467)
T 2oqx_A          392 IGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             ESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence             2                  3  888773  3789999999999998864

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.93  E-value=2.9e-25  Score=209.35  Aligned_cols=284  Identities=16%  Similarity=0.153  Sum_probs=193.5

Q ss_pred             cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCc
Q 015435           70 EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGL  148 (407)
Q Consensus        70 ~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~  148 (407)
                      .|.+..+..++++.+++++ +.       +++++  |+|||+|+.+++  ... +.+||+|+++.++|..+...++..|.
T Consensus        30 ~~~~~~~~~~l~~~la~~~-~~-------~~~~~--~~sGt~al~~al--~~~~~~~gd~Vi~~~~~~~~~~~~~~~~G~   97 (367)
T 3nyt_A           30 QYILGPEVTELEDRLADFV-GA-------KYCIS--CANGTDALQIVQ--MALGVGPGDEVITPGFTYVATAETVALLGA   97 (367)
T ss_dssp             CCSSCHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHTTCCTTCEEEEESSSCTHHHHHHHHTTC
T ss_pred             CccCChHHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHhCCCCcCEEEECCCccHHHHHHHHHcCC
Confidence            4667778999999999998 53       57888  999999999984  333 57999999999999999999999999


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccc-cCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGF-ASGS  227 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~-~~~~  227 (407)
                      +++.++++ ++++.+|++++++++.  +++++++    |+||||...   ++++|.++|++||+++|+|++|+.. .+.+
T Consensus        98 ~~~~~~~~-~~~~~~d~~~l~~~i~--~~~~~v~----~~~~~G~~~---~~~~i~~la~~~~~~li~D~a~~~g~~~~~  167 (367)
T 3nyt_A           98 KPVYVDID-PRTYNLDPQLLEAAIT--PRTKAII----PVSLYGQCA---DFDAINAIASKYGIPVIEDAAQSFGASYKG  167 (367)
T ss_dssp             EEEEECBC-TTTCSBCGGGTGGGCC--TTEEEEC----CBCGGGCCC---CHHHHHHHHHHTTCCBEEECTTTTTCEETT
T ss_pred             EEEEEecC-CccCCcCHHHHHHhcC--cCCcEEE----eeCCccChh---hHHHHHHHHHHcCCEEEEECccccCCeECC
Confidence            99999983 5557899999999886  4444443    678999754   5888888899999999999998643 2221


Q ss_pred             CCchhHHHHHHHHcCCcEEEEEec--CccccccCCCcceeEEeecChhhHHHHHHHHhhhhh--------cccCCCChhH
Q 015435          228 LDADAQSVRMFVADGGECLVAQSY--AKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIR--------PMYSSPPIHG  297 (407)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  297 (407)
                      .   .     +...+  .+++.||  +|.++.+|. .|++  +++++++.+++.........        ......+.+.
T Consensus       168 ~---~-----~~~~~--di~~~Sf~~~K~l~~~g~-gg~~--~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~  234 (367)
T 3nyt_A          168 K---R-----SCNLS--TVACTSFFPSAPLGCYGD-GGAI--FTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQ  234 (367)
T ss_dssp             E---E-----TTSSS--SEEEEECCTTSSSCCSSC-CEEE--EESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHH
T ss_pred             e---e-----ccCCC--CEEEEECCCCCcCCCcCc-eeEE--EeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHH
Confidence            1   0     01111  5777886  899986576 7888  67777766655442221111        0122345544


Q ss_pred             HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cCCc---ee--EEecCCCHHHHHHhHhh
Q 015435          298 ASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI-IKQI---GM--FTFTGLNSEQVAFMTKE  371 (407)
Q Consensus       298 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~---~~--~~~~~~~~~~~~~~l~~  371 (407)
                      +.++...++.          +++..++.+++++++.+.|++.+.    .+. .+.+   .+  +....-+.+.+.+.|.+
T Consensus       235 aa~~~~~l~~----------~~~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  300 (367)
T 3nyt_A          235 AAILLPKLEI----------FEEEIALRQKVAAEYDLSLKQVGI----GTPFIEVNNISVYAQYTVRMDNRESVQASLKA  300 (367)
T ss_dssp             HHHHHHHHHT----------HHHHHHHHHHHHHHHHHHHHHTTC----CCCCCCTTEECCCSSEEEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhccCCe----eccCCCCCCceeeEEEEEEeCCHHHHHHHHHH
Confidence            4444444332          334455666777888888887752    221 1111   11  11112266677777777


Q ss_pred             ccEEEcCCC----------------------------eEEecC-CCCCChhHHHHHHHHH
Q 015435          372 YHIYMTSDG----------------------------RISMAG-LSSKTVPHLTDAIHAA  402 (407)
Q Consensus       372 ~gi~~~~gg----------------------------Ris~~~-~~~e~i~~~~~~l~~~  402 (407)
                      +||.+.++.                            |+++.. ++++|++++++.|++.
T Consensus       301 ~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          301 AGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             HTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred             CCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence            899775420                            555543 5778999998888753

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.93  E-value=1.5e-24  Score=209.03  Aligned_cols=323  Identities=17%  Similarity=0.128  Sum_probs=193.2

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCC---------CCcHHHHHHHHHHHhCCCCCCCCCCce
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPI---------VGLVDFNKLSAKLILGADSPAIKDNRV  101 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~---------~g~~~l~~~~a~~~~~~~~~~~~~~~i  101 (407)
                      .+.+.|..+..    + +.++.+++++.+.+.  .  ...|+..         ....++|+.+++++ +.     ++++|
T Consensus        17 ~~~~~Ld~~~~----~-~~~~~v~~a~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~-----~~~~v   81 (432)
T 3a9z_A           17 NRKVYMDYNAT----T-PLEPEVIQAVTEAMK--E--AWGNPSSSYVAGRKAKDIINTARASLAKMI-GG-----KPQDI   81 (432)
T ss_dssp             -CCEECBTTTC----C-CCCHHHHHHHHHHHH--H--CCSCTTCSSHHHHHHHHHHHHHHHHHHHHH-TC-----CGGGE
T ss_pred             CCcEEeeCCcc----C-CCCHHHHHHHHHHHH--H--hcCCCccCcHHHHHHHHHHHHHHHHHHHHc-CC-----CcCeE
Confidence            34566665542    2 456666666666664  1  1223111         12468999999988 42     34789


Q ss_pred             EEeecCCcccHHHHHHHHHHh------hcCCCeEEecCCCCCCh-----------------HHHHhhcCceeeEEEeecC
Q 015435          102 TTVQCLSGTGSLRVGAEFLAR------HYHQLTIYIPQPTWGNH-----------------PKVFTLAGLSVKTYRYYDP  158 (407)
Q Consensus       102 ~~~~t~g~t~a~~~~~~~~~~------~~~gd~Vi~~~p~y~~~-----------------~~~~~~~G~~~~~v~~~~~  158 (407)
                      ++  |+|+++++.+++..+..      ..+||+|+++.|+|..+                 ....+..|.+++.+|++ +
T Consensus        82 ~~--~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~-~  158 (432)
T 3a9z_A           82 IF--TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVS-K  158 (432)
T ss_dssp             EE--ESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCC-T
T ss_pred             EE--eCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecC-c
Confidence            99  99999999998644421      14899999999999876                 23334579999999984 3


Q ss_pred             CCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC----------ceeeeccccccccCCCC
Q 015435          159 ATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKG----------LLPFFDSAYQGFASGSL  228 (407)
Q Consensus       159 ~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~----------~~li~D~~y~~~~~~~~  228 (407)
                      .++.+|++++++.+.  ++++++++ ++|+||||.+++.   ++|.++|+++|          +++|+|++|..+.. ..
T Consensus       159 ~~~~~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~~---~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~-~~  231 (432)
T 3a9z_A          159 VNGQVEVEDILAAVR--PTTCLVTI-MLANNETGVIMPI---SEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR-RV  231 (432)
T ss_dssp             TTSSCCHHHHHHTCC--TTEEEEEC-CSBCTTTCBBCCH---HHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS-CC
T ss_pred             ccCCcCHHHHHHhcc--CCceEEEE-ECcccCcccccCH---HHHHHHHHhcCcccccccCCceEEEEEchhhhCCc-cc
Confidence            346789999999886  45566555 9999999999985   56777899999          99999999965432 11


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh-------hhcccCCCChhHHHHH
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV-------IRPMYSSPPIHGASIV  301 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  301 (407)
                        +   +..   ... .+++.|+||.+|   .|+||+  +++++...    ..+...       ......+++..++.++
T Consensus       232 --~---~~~---~~~-d~~~~s~~K~~g---~~~G~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  293 (432)
T 3a9z_A          232 --D---VED---LGV-DFLTIVGHKFYG---PRIGAL--YVRGVGKL----TPLYPMLFGGGQERNFRPGTENTPMIAGL  293 (432)
T ss_dssp             --C---HHH---HCC-SEEEEEGGGTTC---CSCEEE--EETTBTTT----BCCCCSCCSSCGGGGTSCSCCCHHHHHHH
T ss_pred             --C---hhh---cCC-CEEEEehhHhcC---CcceEE--EEcccccc----CCcCceeecCCccccccCCCcCHHHHHHH
Confidence              1   111   122 356899999764   579999  56633201    111110       1112235666667666


Q ss_pred             HHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcccc--cC------C--ceeEEecCC--CHHHHHHh
Q 015435          302 ATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR-GTPGDWSHI--IK------Q--IGMFTFTGL--NSEQVAFM  368 (407)
Q Consensus       302 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~--~~------~--~~~~~~~~~--~~~~~~~~  368 (407)
                      ..+++..      .+.+++.+++++++++++.+.|+++ +    +.+.  .+      .  ...|.+.+.  +.+.+...
T Consensus       294 ~aal~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (432)
T 3a9z_A          294 GKAADLV------SENCETYEAHMRDIRDYLEERLEAEFG----KRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQ  363 (432)
T ss_dssp             HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHG----GGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHH
T ss_pred             HHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHhccC----CcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHH
Confidence            6566532      2346778888999999999999874 4    2221  11      1  122344442  44433322


Q ss_pred             Hh----hccEEEcC-------------C-------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          369 TK----EYHIYMTS-------------D-------G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       369 l~----~~gi~~~~-------------g-------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.    +.|+.+.+             |       +  ||+++. .+++++++++++|+++++++
T Consensus       364 l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~  428 (432)
T 3a9z_A          364 CQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQL  428 (432)
T ss_dssp             CSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence            21    12222211             1       3  999875 36899999999999998754

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.93  E-value=2.8e-25  Score=208.63  Aligned_cols=289  Identities=12%  Similarity=0.060  Sum_probs=181.8

Q ss_pred             cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCe--EEecCCCCCChH---HH
Q 015435           68 VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT--IYIPQPTWGNHP---KV  142 (407)
Q Consensus        68 ~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~--Vi~~~p~y~~~~---~~  142 (407)
                      ...|.+..+..++++.+++++ +.       +..++  ++||++++.+++  ...+.+||+  |+++.++|....   ..
T Consensus        41 ~~~~~~~~~~~~l~~~la~~~-~~-------~~~i~--~~~g~~a~~~a~--~~~~~~g~~~vvi~~~~~~~~~~~~~~~  108 (359)
T 3pj0_A           41 SDIYGNGAVIEDFETKIAKIL-GK-------QSAVF--FPSGTMAQQIAL--RIWADRKENRRVAYHPLSHLEIHEQDGL  108 (359)
T ss_dssp             CCBTTBSHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHHHHHHTCCEEEECTTCHHHHSSTTHH
T ss_pred             cCcccCCHHHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHHHhcCCCcEEEEeccceeeehhcchH
Confidence            345777778999999999988 43       34466  788889998885  333567776  555555443222   12


Q ss_pred             HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeeccccc
Q 015435          143 FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ  221 (407)
Q Consensus       143 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D~~y~  221 (407)
                      ....|.+++.++.   .++.+|+++++++ .  ++++++++ ++|+||| |.+++.+++++|+++|++||++||+|++|.
T Consensus       109 ~~~~g~~~~~v~~---~~~~~d~~~l~~~-~--~~~~~v~~-~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~  181 (359)
T 3pj0_A          109 KELQQITPLLLGT---ANQLLTIDDIKSL-R--EPVSSVLI-ELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARL  181 (359)
T ss_dssp             HHHHCCEEEECSC---TTSCCCHHHHHTC-S--SCCSEEEE-ESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTC
T ss_pred             HHhcCceEEecCC---cCCCcCHHHHHhc-c--CCceEEEE-EecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence            2457999988876   2467999999987 3  56788777 8999998 799999999999999999999999999976


Q ss_pred             cccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCC--ChhHHH
Q 015435          222 GFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSP--PIHGAS  299 (407)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  299 (407)
                      .+....   ...+...+..  ...+++.|+||.++.++ + |++   +.++++.+.+..    .......+.  ....+.
T Consensus       182 ~~~~~~---~~~~~~~~~~--~~d~~~~s~sK~~~~~~-g-g~~---~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~  247 (359)
T 3pj0_A          182 WEITPF---YQKSAEEICA--LFDSVYVSFYKGIGGIA-G-AIL---AGNDDFVQEAKI----WKRRYGGDLISLYPYIL  247 (359)
T ss_dssp             GGGHHH---HTCCHHHHHT--TCSEEEEESSSTTCCSS-C-EEE---EECHHHHHHHHH----HHHHTTCCCSCCHHHHH
T ss_pred             hcchhh---hCCCHHHhhc--cCCEEEEeccccCCCcc-e-EEE---ECCHHHHHHHHH----HHHHhCCCcchhHHHHH
Confidence            443110   0001112222  22345569999887552 2 555   555655554433    222211122  222222


Q ss_pred             HHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cCCceeEEec--CCC----HHHHHHhHhhc
Q 015435          300 IVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI-IKQIGMFTFT--GLN----SEQVAFMTKEY  372 (407)
Q Consensus       300 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~--~~~----~~~~~~~l~~~  372 (407)
                      ++...++         +.. +..+++.++++++.+.|++++.   +.+. .+..+.+.|+  +..    .+.+.+.|.++
T Consensus       248 a~~~~l~---------~~~-~~~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  314 (359)
T 3pj0_A          248 SADYYFE---------KRI-GKMAEYFEAAKGLAERFNSCSG---VKTVPEVPVSNMFHVYFENSADEIGAILTKIQDET  314 (359)
T ss_dssp             HHHHHHH---------HHG-GGHHHHHHHHHHHHHHHHTSTT---EEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---------HHH-HHhHHHHHHHHHHHHHHhhCCC---ceeeccCCcceEEEEEecCccchhHHHHHHHHHhc
Confidence            2222222         112 2334467788899999988732   6653 3444445554  332    34566677779


Q ss_pred             cEEEcCCC----------eEEecC----CCCCChhHHHHHHHHH
Q 015435          373 HIYMTSDG----------RISMAG----LSSKTVPHLTDAIHAA  402 (407)
Q Consensus       373 gi~~~~gg----------Ris~~~----~~~e~i~~~~~~l~~~  402 (407)
                      ||.+.||.          |++++.    .+.+++++++++|.+.
T Consensus       315 GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          315 GVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             CEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             CcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            99999872          776652    2456677777777654

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.93  E-value=1.9e-23  Score=198.25  Aligned_cols=279  Identities=15%  Similarity=0.111  Sum_probs=193.5

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~  148 (407)
                      +..+..++++++++++ +..      +.+++  ++| ++++.++++.+  +.+||+|+++.|+|.+....    ++..|.
T Consensus        50 ~~~~~~~l~~~la~~~-~~~------~~i~~--~sG-t~a~~~~~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~  117 (386)
T 1cs1_A           50 GNPTRDVVQRALAELE-GGA------GAVLT--NTG-MSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAKRGCY  117 (386)
T ss_dssp             CCHHHHHHHHHHHHHH-TCS------EEEEE--SSH-HHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred             CCccHHHHHHHHHHHh-CCC------cEEEe--CCH-HHHHHHHHHHH--hCCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence            4566789999999998 431      45555  555 99999985433  77999999999999875554    367788


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++.       .|++++++.+.  ++++++++ ++|+||||.+++   +++|+++|++||+++|+|++|..+.... 
T Consensus       118 ~~~~~~~-------~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~-  183 (386)
T 1cs1_A          118 RVLFVDQ-------GDEQALRAALA--EKPKLVLV-ESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN-  183 (386)
T ss_dssp             EEEEECT-------TCHHHHHHHHH--TCCSEEEE-ECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred             EEEEeCC-------CCHHHHHHhhc--cCCcEEEE-eCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            9888865       28899999998  56788777 899999999885   7888888999999999999998877531 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                        .      +  ..+..+++.|+||.++.+|.|+ ||+  +++++++.+.+..    ....+..+.+...+.++...++.
T Consensus       184 --~------~--~~~~di~~~s~sK~~~~~~~~~~G~~--~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~  247 (386)
T 1cs1_A          184 --P------L--ALGADLVLHSCTKYLNGHSDVVAGVV--IAKDPDVVTELAW----WANNIGVTGGAFDSYLLLRGLRT  247 (386)
T ss_dssp             --G------G--GGTCSEEEEETTTTTTCSSCCCCEEE--EESSHHHHHHHHH----HHHHHTCBCCHHHHHHHHHHHTT
T ss_pred             --c------c--ccCceEEEEcCcccccCCCCceeEEE--EeCcHHHHHHHHH----HHHhcCCCCCHHHHHHHHhcccH
Confidence              1      1  1246789999999999899987 888  5765455554433    33323335666666666555542


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Ccccc----cCCceeEEec-CCCHHHHHHhHhh
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSHI----IKQIGMFTFT-GLNSEQVAFMTKE  371 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~----~~~~~~~~~~-~~~~~~~~~~l~~  371 (407)
                                +....+++.++.+.+.+.+++++.      +.     .+.+.    ...++++.+. .-..+.+...|++
T Consensus       248 ----------~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  317 (386)
T 1cs1_A          248 ----------LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGG  317 (386)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHT
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHh
Confidence                      233445566677777777766531      00     01111    1236665543 2135667777788


Q ss_pred             ccEEEcC---C-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          372 YHIYMTS---D-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       372 ~gi~~~~---g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +||.+.+   |                             +  ||+++.   ++.++.++++.++++++
T Consensus       318 ~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~---~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          318 LSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRAA  383 (386)
T ss_dssp             CSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHH
T ss_pred             CCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHHh
Confidence            8998762   2                             2  888774   67788888888877653

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.93  E-value=5.4e-24  Score=202.78  Aligned_cols=277  Identities=16%  Similarity=0.189  Sum_probs=186.2

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~  148 (407)
                      +.....++++.+++++ +.       ++.++  ++||++++..++  ...+.+||+|+++.|+|.++...+    ...|.
T Consensus        63 ~~~~~~~l~~~la~~~-g~-------~~~i~--~~sG~~a~~~~l--~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~  130 (398)
T 1gc0_A           63 SNPTLNLLEARMASLE-GG-------EAGLA--LASGMGAITSTL--WTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV  130 (398)
T ss_dssp             CCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHH--HHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTC
T ss_pred             CChHHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH--HHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCC
Confidence            4556888999999988 43       35566  667789999985  334779999999999999887766    67799


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++.       .|++++++.+.  ++++++++ ++|+||||.+.+   +++|+++|++||+++|+|++|..+.... 
T Consensus       131 ~~~~~~~-------~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~-  196 (398)
T 1gc0_A          131 KLRHVDM-------ADLQALEAAMT--PATRVIYF-ESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR-  196 (398)
T ss_dssp             EEEEECT-------TCHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC-
T ss_pred             EEEEECC-------CCHHHHHHhcC--CCCeEEEE-ECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            9888865       27899999887  55667666 899999999885   8888889999999999999997665421 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhc-ccCCCChhHHHHHHHHhc
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRP-MYSSPPIHGASIVATILK  306 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~  306 (407)
                        .      +  ..+..+++.|+||.++.+|.|+ |++  +++ ++..+   ..+...... ...+.+...+.++...++
T Consensus       197 --~------~--~~~~d~~~~S~sK~~~~~~~~~~G~l--~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~  260 (398)
T 1gc0_A          197 --P------L--ELGADLVVHSATKYLSGHGDITAGIV--VGS-QALVD---RIRLQGLKDMTGAVLSPHDAALLMRGIK  260 (398)
T ss_dssp             --G------G--GGTCSEEEEETTTTTTCSSSCCCEEE--EEC-HHHHH---HHHHTHHHHHTCCCCCHHHHHHHHHHHT
T ss_pred             --c------h--hhCceEEEECCccccCCCCCCeEEEE--EEC-hHHHH---HHHHHHhhccCCCCCCHHHHHHHHhccc
Confidence              0      1  1245789999999999999998 777  455 33222   123322222 233566777777666665


Q ss_pred             ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Cccccc----CCceeEEecCC--CHHHHHHhH
Q 015435          307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSHII----KQIGMFTFTGL--NSEQVAFMT  369 (407)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~~----~~~~~~~~~~~--~~~~~~~~l  369 (407)
                      ..          ....++..++.+.+.+.|++.+.      +.     .+.+..    ..++++.+ .+  ..+.+..++
T Consensus       261 ~~----------~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l  329 (398)
T 1gc0_A          261 TL----------NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAF-ELKGGIGAGRRFM  329 (398)
T ss_dssp             TH----------HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEE-EETTHHHHHHHHH
T ss_pred             hH----------HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEE-EECCCHHHHHHHH
Confidence            32          23345555666777777766431      00     011111    24666655 33  234567777


Q ss_pred             hhccEEEcC---C-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          370 KEYHIYMTS---D-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       370 ~~~gi~~~~---g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ++.++.+..   |                             +  |||++.   ++.+..++.+.+++++
T Consensus       330 ~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~---~~~~~~i~~l~~al~~  396 (398)
T 1gc0_A          330 NALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL---EDIDDLLADVQQALKA  396 (398)
T ss_dssp             HHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred             HhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHHHHh
Confidence            777765532   1                             2  888774   5566666666666654

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.93  E-value=6.2e-24  Score=202.68  Aligned_cols=237  Identities=14%  Similarity=0.065  Sum_probs=162.3

Q ss_pred             chhHHHHHHHHhccccccccCC--CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCe
Q 015435           51 LNVVRKAEQLLVNDQSRVKEYL--PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT  128 (407)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~y~--~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~  128 (407)
                      .+..+...+.+. .....+.|+  +.....++++.+++++ +.       +++++  ++||++|+.+++  ...+.+||+
T Consensus        56 ~~~~~~~~~~~~-~~~~~~~y~r~~~p~~~~l~~~la~~~-g~-------~~~~~--~~sG~~Ai~~al--~~l~~~Gd~  122 (414)
T 3ndn_A           56 YGSAAVAEKSFA-GELDHYVYSRYGNPTVSVFEERLRLIE-GA-------PAAFA--TASGMAAVFTSL--GALLGAGDR  122 (414)
T ss_dssp             CSSHHHHHHHHT-TSSCCCCBTTTCCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHH--HTTCCTTCE
T ss_pred             cCChHHHHHHHh-CCcCCcCcCCCCChHHHHHHHHHHHHH-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCE
Confidence            344444444443 222233343  2334677788888877 42       67888  999999999884  445789999


Q ss_pred             EEecCCCCCChHHHHhh----cCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHH
Q 015435          129 IYIPQPTWGNHPKVFTL----AGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIR  204 (407)
Q Consensus       129 Vi~~~p~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~  204 (407)
                      |++++|+|.++...+..    .|.+++.++..       |++++++++.  ++++++++ ++|+||||.+.+   +++|+
T Consensus       123 Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~ai~--~~t~~v~l-e~p~NptG~~~~---l~~i~  189 (414)
T 3ndn_A          123 LVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-------DLSQWERALS--VPTQAVFF-ETPSNPMQSLVD---IAAVT  189 (414)
T ss_dssp             EEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------CHHHHHHHTS--SCCSEEEE-ESSCTTTCCCCC---HHHHH
T ss_pred             EEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-------CHHHHHHhcC--CCCeEEEE-ECCCCCCCcccc---HHHHH
Confidence            99999999998777654    89999999761       8899999987  67788888 999999999865   77888


Q ss_pred             HHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHh
Q 015435          205 QLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLK  283 (407)
Q Consensus       205 ~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~  283 (407)
                      ++|+++|+++|+|++|........         +  .....+++.|+||.++.+| +++|++  +++ ++...   ..+.
T Consensus       190 ~la~~~g~~livDe~~~~~~~~~~---------~--~~g~div~~S~sK~l~~~G~~~~G~v--v~~-~~~~~---~~l~  252 (414)
T 3ndn_A          190 ELAHAAGAKVVLDNVFATPLLQQG---------F--PLGVDVVVYSGTKHIDGQGRVLGGAI--LGD-REYID---GPVQ  252 (414)
T ss_dssp             HHHHHTTCEEEEECTTTHHHHCCC---------G--GGTCSEEEEETTTTTTCSSCCCCEEE--EEC-HHHHT---THHH
T ss_pred             HHHHHcCCEEEEECCCcccccCCc---------h--hcCCCeEeccCCccccCCCCceEEEE--EEC-HHHHH---HHHH
Confidence            899999999999999873322110         1  1234688999999999888 788988  565 32222   1233


Q ss_pred             hhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          284 LVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      ..........+...+.++...++.          +....++..++++.+.+.|++.+
T Consensus       253 ~~~~~~g~~~~~~~a~~~~~~l~~----------l~~r~~~~~~~a~~l~~~L~~~p  299 (414)
T 3ndn_A          253 KLMRHTGPAMSAFNAWVLLKGLET----------LAIRVQHSNASAQRIAEFLNGHP  299 (414)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHGGG----------HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhcCC
Confidence            222222334455444444433332          34445666778888888888764

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.93  E-value=6.1e-25  Score=204.07  Aligned_cols=246  Identities=17%  Similarity=0.136  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCceeeEEE
Q 015435           79 DFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGLSVKTYR  154 (407)
Q Consensus        79 ~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~~~~v~  154 (407)
                      ++++.+++++ +.       ++.++  +++|++++.+++.  ..+.+||+|+++.|+|.++...+    +..|.+++.++
T Consensus         2 ~l~~~la~~~-g~-------~~~i~--~~sG~~a~~~~~~--~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   69 (331)
T 1pff_A            2 ALEGKIAKLE-HA-------EACAA--TASGMGAIAASVW--TFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID   69 (331)
T ss_dssp             HHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHHH--HHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             hHHHHHHHHh-CC-------CeEEE--eCChHHHHHHHHH--HhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence            6889999988 43       24444  5555899999853  33679999999999999887765    45899998886


Q ss_pred             eecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHH-cCceeeeccccccccCCCCCchhH
Q 015435          155 YYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS-KGLLPFFDSAYQGFASGSLDADAQ  233 (407)
Q Consensus       155 ~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~-~~~~li~D~~y~~~~~~~~~~~~~  233 (407)
                      .       .|++++++.++  ++++++++ ++|+||||.+++   +++|+++|++ +|+++|+|++|..+....   +  
T Consensus        70 ~-------~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~---~--  131 (331)
T 1pff_A           70 M-------AVPGNIEKHLK--PNTRIVYF-ETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN---P--  131 (331)
T ss_dssp             T-------TSTTHHHHTCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC---G--
T ss_pred             C-------CCHHHHHHhhc--CCCeEEEE-ECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC---h--
Confidence            5       47888988886  55667666 899999999986   8888888999 999999999997554321   0  


Q ss_pred             HHHHHHHcCCcEEEEEecCccccccCCC-cceeEEeecChhhHHHHHHHHhhhhhc-ccCCCChhHHHHHHHHhcChhhH
Q 015435          234 SVRMFVADGGECLVAQSYAKNMGLYGER-VGALSIVCKTEDVASRVESQLKLVIRP-MYSSPPIHGASIVATILKDSTMY  311 (407)
Q Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r-~G~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~  311 (407)
                          +  ..+..+++.|+||.++.+|.| +||+  +++++    .+.+.+...... ...+.+...+.++...++.    
T Consensus       132 ----~--~~~~d~~~~s~~K~~~~~~~r~~G~~--~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----  195 (331)
T 1pff_A          132 ----L--DLGVDIVVHSATKYINGHTDVVAGLV--CSRAD----IIAKVKSQGIKDITGAIISPHDAWLITRGTLT----  195 (331)
T ss_dssp             ----G--GGTCSEEEEETTTTTSSSSSCCCEEE--EECHH----HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH----
T ss_pred             ----h--hcCCcEEEEECccccCCCCCceEEEE--EeCcH----HHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch----
Confidence                1  134689999999999999999 7888  56622    344445544443 3345666666665544432    


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Cccccc----CCceeEEecCCCHHHHHHhHhhccEEE
Q 015435          312 KEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSHII----KQIGMFTFTGLNSEQVAFMTKEYHIYM  376 (407)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~gi~~  376 (407)
                            .....++..++.+.+.+.+++...      +.     .+.+..    ..++++.+.-.+.+.+...++++||.+
T Consensus       196 ------~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~  269 (331)
T 1pff_A          196 ------LDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVS  269 (331)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSE
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHhCCCce
Confidence                  122223334444444555443210      00     122221    135555543226677888888899954

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.93  E-value=1.3e-23  Score=199.59  Aligned_cols=215  Identities=16%  Similarity=0.100  Sum_probs=161.0

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCce
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGLS  149 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~  149 (407)
                      .....++++.+++++ +.       +++++  ++||++|+.+++  ...+.+||+|+++.|+|.++...+    +..|.+
T Consensus        65 ~~~~~~l~~~la~~~-g~-------~~~~~--~~sGt~A~~~al--~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~  132 (392)
T 3qhx_A           65 NPTRTALEAALAAVE-DA-------AFGRA--FSSGMAAADCAL--RAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE  132 (392)
T ss_dssp             CHHHHHHHHHHHHHT-TC-------SEEEE--ESSHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCE
T ss_pred             ChHHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcE
Confidence            445778999999987 43       46888  999999999985  334789999999999998877666    678999


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                      ++.++.       .|++++++++.  ++++++++ ++|+||||.+.+   +++|+++|++||+++|+|++|..+....  
T Consensus       133 ~~~v~~-------~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~--  197 (392)
T 3qhx_A          133 YTPVAL-------ADLDAVRAAIR--PTTRLIWV-ETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQ--  197 (392)
T ss_dssp             EEEECT-------TCHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC--
T ss_pred             EEEeCC-------CCHHHHHHhhC--CCCeEEEE-ECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence            998876       28899999987  56777776 899999999875   8888999999999999999997554321  


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                        ..       .....+++.|+||.++.+| .|+||+  +++++++.+.+    ..........+++..+.++...++..
T Consensus       198 --~~-------~~~~di~~~S~sK~lg~~g~~~~G~v--~~~~~~~~~~l----~~~~~~~g~~~~~~~~~~~~~~l~~l  262 (392)
T 3qhx_A          198 --PL-------SLGADVVLHSTTKYIGGHSDVVGGAL--VTNDEELDQSF----AFLQNGAGAVPGPFDAYLTMRGLKTL  262 (392)
T ss_dssp             --GG-------GGTCSEEEEETTTTTTCSSCCCCEEE--EESCHHHHHHH----HHHHHHHCCCCCHHHHHHHHHHHTTH
T ss_pred             --hH-------HhCCcEEEEcCccccCCCCCceEEEE--EECcHHHHHHH----HHHHHhcCCCCCHHHHHHHHhhhhHH
Confidence              11       1234688999999999877 789998  67766554443    33333344566777777777666543


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                                ....++..++.+.+.+.|++.+
T Consensus       263 ----------~~~~~~~~~~~~~l~~~L~~~~  284 (392)
T 3qhx_A          263 ----------VLRMQRHSENAAAVAEFLAEHP  284 (392)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHTCT
T ss_pred             ----------HHHHHHHHHHHHHHHHHHhcCC
Confidence                      2334556667777888887653

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.93  E-value=3.5e-24  Score=202.27  Aligned_cols=305  Identities=8%  Similarity=-0.003  Sum_probs=203.7

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh---hc
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR---HY  124 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~---~~  124 (407)
                      +.++.+.+++.+.+.  .   ..|.+.....++++.+++++ +.       +++++  |+||++++.+++  ...   +.
T Consensus        10 ~~~~~v~~a~~~~~~--~---~~~~~~~~~~~l~~~la~~~-~~-------~~v~~--~~ggt~al~~~~--~~~~~~~~   72 (375)
T 2fnu_A           10 CLDKEDKKAVLEVLN--S---KQLTQGKRSLLFEEALCEFL-GV-------KHALV--FNSATSALLTLY--RNFSEFSA   72 (375)
T ss_dssp             CCCHHHHHHHHHHHT--S---SCCSSSHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHSSCCCT
T ss_pred             CCCHHHHHHHHHHHH--c---CcccCChHHHHHHHHHHHHh-CC-------CeEEE--eCCHHHHHHHHH--HHhcccCC
Confidence            445566666666664  1   22445567889999999998 53       48999  999999999984  444   56


Q ss_pred             CCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHH
Q 015435          125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIR  204 (407)
Q Consensus       125 ~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~  204 (407)
                      +||+|+++.|+|..+...+...|++++.++++ +. +.+|++++++.+.  ++++++++ ++   |||.+.+   +++|.
T Consensus        73 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~-~~~d~~~l~~~i~--~~~~~v~~-~~---~tG~~~~---l~~i~  141 (375)
T 2fnu_A           73 DRNEIITTPISFVATANMLLESGYTPVFAGIK-ND-GNIDELALEKLIN--ERTKAIVS-VD---YAGKSVE---VESVQ  141 (375)
T ss_dssp             TSCEEEECSSSCTHHHHHHHHTTCEEEECCBC-TT-SSBCGGGSGGGCC--TTEEEEEE-EC---GGGCCCC---HHHHH
T ss_pred             CCCEEEECCCccHhHHHHHHHCCCEEEEeccC-CC-CCCCHHHHHhhcC--cCceEEEE-eC---CcCCccC---HHHHH
Confidence            89999999999999999999999999999983 33 4789999998886  45566555 43   3999876   68888


Q ss_pred             HHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecC--ccccccCCCcceeEEee-cChhhHHHHHHH
Q 015435          205 QLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA--KNMGLYGERVGALSIVC-KTEDVASRVESQ  281 (407)
Q Consensus       205 ~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~G~r~G~~~~v~-~~~~~~~~~~~~  281 (407)
                      ++|++||+++|+|++|+.+....   . ..   +....  .+.+.|+|  |.++. |  +|++  ++ +++++.+++...
T Consensus       142 ~l~~~~~~~li~D~a~~~~~~~~---~-~~---~~~~~--~i~~~s~s~~K~~~~-g--~g~~--~~~~~~~~~~~~~~~  207 (375)
T 2fnu_A          142 KLCKKHSLSFLSDSSHALGSEYQ---N-KK---VGGFA--LASVFSFHAIKPITT-A--EGGA--VVTNDSELHEKMKLF  207 (375)
T ss_dssp             HHHHHHTCEEEEECTTCTTCEET---T-EE---TTSSS--SEEEEECCTTSSSCC-S--SCEE--EEESCHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEECccccCCeEC---C-ee---ccccC--CeEEEeCCCCCCccc-c--CceE--EEeCCHHHHHHHHHH
Confidence            88999999999999987544211   0 00   11111  37788888  99975 6  6887  45 556665555442


Q ss_pred             Hhhhh----------hccc--CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435          282 LKLVI----------RPMY--SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII  349 (407)
Q Consensus       282 ~~~~~----------~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  349 (407)
                      .....          ....  ...+.+...++...+          +.+++..++.+++++++.+.|++++.   +.+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~  274 (375)
T 2fnu_A          208 RSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL----------KKAPFLMQKREEAALTYDRIFKDNPY---FTPLH  274 (375)
T ss_dssp             TBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH----------TTHHHHHHHHHHHHHHHHHHHTTCSS---EEESG
T ss_pred             HhcCCccccccccccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhcCCC---ccccC
Confidence            21111          0000  122232222222111          22456677888899999999988632   55443


Q ss_pred             C----Cce-eEEec--C---C-CHHHHHHhHhhccEEEcC----C-----------------------C--eEEecC-CC
Q 015435          350 K----QIG-MFTFT--G---L-NSEQVAFMTKEYHIYMTS----D-----------------------G--RISMAG-LS  388 (407)
Q Consensus       350 ~----~~~-~~~~~--~---~-~~~~~~~~l~~~gi~~~~----g-----------------------g--Ris~~~-~~  388 (407)
                      +    .++ ++.++  +   . +.+.+.+.|.++||.+..    +                       +  ||+++. .+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t  354 (375)
T 2fnu_A          275 PLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN  354 (375)
T ss_dssp             GGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC
T ss_pred             CCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCC
Confidence            3    122 22233  2   2 455565566678998872    1                       2  887764 47


Q ss_pred             CCChhHHHHHHHHHHHhhC
Q 015435          389 SKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~~~~  407 (407)
                      ++++++++++|++++++++
T Consensus       355 ~~~i~~~~~~l~~~~~~~~  373 (375)
T 2fnu_A          355 LESVQNIAHSVLKTFESFK  373 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            7999999999999987653

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.92  E-value=4e-24  Score=203.66  Aligned_cols=277  Identities=15%  Similarity=0.129  Sum_probs=188.0

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~  148 (407)
                      +..+..++++++++++ +..      +.+++  ++ |++++.+++  . .+.+||+|++++|+|.+....    ++..|.
T Consensus        65 ~~p~~~~l~~~la~~~-g~~------~~i~~--~s-G~~ai~~~~--~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~  131 (403)
T 3cog_A           65 GNPTRNCLEKAVAALD-GAK------YCLAF--AS-GLAATVTIT--H-LLKAGDQIICMDDVYGGTNRYFRQVASEFGL  131 (403)
T ss_dssp             -CHHHHHHHHHHHHHH-TCS------EEEEE--SC-HHHHHHHHH--T-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred             CCchHHHHHHHHHHHh-CCC------cEEEE--CC-HHHHHHHHH--H-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence            4467789999999998 431      44555  54 568998884  3 477999999999999875543    357899


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC-ceeeeccccccccCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKG-LLPFFDSAYQGFASGS  227 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~-~~li~D~~y~~~~~~~  227 (407)
                      +++.++..       |++++++.+.  ++++++++ ++|+||||.+++   +++|+++|+++| +++|+|++|..+.+..
T Consensus       132 ~v~~v~~~-------d~~~l~~~i~--~~t~~v~~-~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~  198 (403)
T 3cog_A          132 KISFVDCS-------KIKLLEAAIT--PETKLVWI-ETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR  198 (403)
T ss_dssp             EEEEECTT-------SHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC
T ss_pred             EEEEECCC-------CHHHHHHhcC--cCCeEEEE-ECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC
Confidence            99998761       8899999887  56677776 899999999986   888888999999 9999999998776431


Q ss_pred             CCchhHHHHHHHHcCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhc
Q 015435          228 LDADAQSVRMFVADGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK  306 (407)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  306 (407)
                      .      +    . .+..++++|+||.++.+|. |+||+  +++++++.+.+..    ....+....+.+.+.++...++
T Consensus       199 ~------~----~-~~~div~~S~sK~~~g~~~~~~G~v--~~~~~~l~~~l~~----~~~~~g~~~~~~~~~~~~~~l~  261 (403)
T 3cog_A          199 P------L----A-LGADISMYSATKYMNGHSDVVMGLV--SVNCESLHNRLRF----LQNSLGAVPSPIDCYLCNRGLK  261 (403)
T ss_dssp             T------T----T-TTCSEEEEETTTTTTCSSCCCCEEE--EECCHHHHHHHHH----HHHHHCCCCCHHHHHHHHHHHT
T ss_pred             c------c----c-cCCeEEEEcChhhccCCCCCeEEEE--EECcHHHHHHHHH----HHHhcCCCCCHHHHHHHHhhhh
Confidence            1      1    1 2467999999999997764 78998  5766665554433    3333344567777777777776


Q ss_pred             ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CC--CcccccC----CceeEEec-CCCHHHHHHhHh
Q 015435          307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGT---------PG--DWSHIIK----QIGMFTFT-GLNSEQVAFMTK  370 (407)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---------~~--~~~~~~~----~~~~~~~~-~~~~~~~~~~l~  370 (407)
                      ...          ...++..++...+.+.+++.+.         +.  .+.+..+    .++++.|. .-..+.+.++++
T Consensus       262 ~l~----------~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~  331 (403)
T 3cog_A          262 TLH----------VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLK  331 (403)
T ss_dssp             THH----------HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHH
T ss_pred             HHH----------HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHH
Confidence            432          2223334445555555544310         00  1333333    37777774 213355677777


Q ss_pred             hccEEEc-------------C----------------C---C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          371 EYHIYMT-------------S----------------D---G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       371 ~~gi~~~-------------~----------------g---g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +.+|.+.             |                |   +  |||++.   ++.+..++.|.+++++
T Consensus       332 ~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~---e~~~d~i~~l~~al~~  397 (403)
T 3cog_A          332 NLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGL---EDEEDLLEDLDQALKA  397 (403)
T ss_dssp             HCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred             hCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence            7777432             1                1   2  888874   6677778888777764

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.92  E-value=1.6e-22  Score=193.93  Aligned_cols=272  Identities=17%  Similarity=0.091  Sum_probs=180.0

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCcee
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGLSV  150 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~~~  150 (407)
                      ....++++.+++++ +.       ++.++  +++|++++.+++  ...+.+||+|+++.+.|.+....    ++..|.++
T Consensus       114 ~~~~~l~~~lA~l~-g~-------~~~v~--~~sG~~Ai~~al--~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v  181 (445)
T 1qgn_A          114 PTTVVLEEKISALE-GA-------ESTLL--MASGMCASTVML--LALVPAGGHIVTTTDCYRKTRIFIETILPKMGITA  181 (445)
T ss_dssp             HHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEE
T ss_pred             hHHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEE
Confidence            34668999999988 43       23444  555569999984  44478999999999999987764    55789999


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCC-cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSG-AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD  229 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~-~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~  229 (407)
                      +.++.       .|++++++++.  +++ +++++ ++|+||||.+.+   +++|+++|++||+++|+|++|.......  
T Consensus       182 ~~v~~-------~d~~~l~~ai~--~~tv~lV~l-e~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~--  246 (445)
T 1qgn_A          182 TVIDP-------ADVGALELALN--QKKVNLFFT-ESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK--  246 (445)
T ss_dssp             EEECS-------SCHHHHHHHHH--HSCEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--
T ss_pred             EEeCC-------CCHHHHHHHhc--cCCCCEEEE-eCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence            98865       18899999998  567 77777 899999999876   7788888999999999999997554321  


Q ss_pred             chhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435          230 ADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                        .     +  .....++++|+||.++..| .++|++  +++ +++.+.    +...........+...+..+...++. 
T Consensus       247 --~-----~--~~g~Div~~S~sK~~gg~gd~~~G~l--~~~-~~l~~~----l~~~~~~~g~~~~~~~a~~~~~~l~~-  309 (445)
T 1qgn_A          247 --A-----L--ALGADLVLHSATKFLGGHNDVLAGCI--SGP-LKLVSE----IRNLHHILGGALNPNAAYLIIRGMKT-  309 (445)
T ss_dssp             --T-----T--TTTCSEEEECTTTTTTCSSSCCCEEE--EEC-HHHHHH----HHHHHHHHCCCCCHHHHHHHHHHGGG-
T ss_pred             --c-----c--ccCCEEEEECCcccccccccceEEEE--EEC-HHHHHH----HHHHHHHhCCCCCHHHHHHHHHhHHH-
Confidence              1     0  1234588999999998665 378998  454 444443    33333323233455444444444432 


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cccc-----------------CCceeEEec-CCCHHHHHHhH
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDW-SHII-----------------KQIGMFTFT-GLNSEQVAFMT  369 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~-----------------~~~~~~~~~-~~~~~~~~~~l  369 (407)
                               +....+++.++++.+.+.|++.+.   + .+..                 ..++++.+. +-..+....++
T Consensus       310 ---------l~~r~~~~~~~a~~l~~~L~~~p~---v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l  377 (445)
T 1qgn_A          310 ---------LHLRVQQQNSTALRMAEILEAHPK---VRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFV  377 (445)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHTCTT---EEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHhcCCC---ceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHH
Confidence                     233345556677888888887642   2 1111                 135554432 21333344443


Q ss_pred             hh---ccEEEcCC-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          370 KE---YHIYMTSD-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       370 ~~---~gi~~~~g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ++   .++.++.|                             +  |||++   .|+++.+++.|+++++.
T Consensus       378 ~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG---~Edid~li~~L~~al~~  444 (445)
T 1qgn_A          378 DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG---VEDFDDLKADILQALDS  444 (445)
T ss_dssp             HHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC---SSCHHHHHHHHHHHHHH
T ss_pred             HhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHhh
Confidence            33   24432221                             2  88877   47899999999999875

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.92  E-value=1.1e-24  Score=205.91  Aligned_cols=303  Identities=13%  Similarity=0.059  Sum_probs=197.9

Q ss_pred             cchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hcCCCe
Q 015435           50 VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLT  128 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~  128 (407)
                      ++.+.+++.+.+.     ...|.+..+..++++.+++++ +.       +++++  |+|||+|+.+++  ... +.+||+
T Consensus        16 ~~~~~~a~~~~~~-----~~~~~~~~~~~~l~~~la~~~-~~-------~~~i~--~~sgt~al~~~l--~~l~~~~gd~   78 (373)
T 3frk_A           16 EYEIKFKFEEIYK-----RNWFILGDEDKKFEQEFADYC-NV-------NYCIG--CGNGLDALHLIL--KGYDIGFGDE   78 (373)
T ss_dssp             HHHHHHHHHHHHH-----HTCCSSSHHHHHHHHHHHHHH-TS-------SEEEE--ESCHHHHHHHHH--HHTTCCTTCE
T ss_pred             CHHHHHHHHHHHH-----CCCccCCchHHHHHHHHHHHh-CC-------CeEEE--eCCHHHHHHHHH--HHcCCCCcCE
Confidence            3344444444443     123667788999999999998 53       57888  999999999984  444 678999


Q ss_pred             EEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHH
Q 015435          129 IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMR  208 (407)
Q Consensus       129 Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~  208 (407)
                      |+++.|+|..+...++..|.+++.++.+ ++++.+|++++++.+.  +++++++    |+||||...   ++++|.++|+
T Consensus        79 Vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~l~--~~~~~v~----~~n~~G~~~---~l~~i~~l~~  148 (373)
T 3frk_A           79 VIVPSNTFIATALAVSYTGAKPIFVEPD-IRTYNIDPSLIESAIT--EKTKAII----AVHLYGQPA---DMDEIKRIAK  148 (373)
T ss_dssp             EEEETTSCTHHHHHHHHHSCEEEEECEE-TTTTEECGGGTGGGCC--TTEEEEE----EECCTTCCC---CHHHHHHHHH
T ss_pred             EEECCCCcHHHHHHHHHcCCEEEEEecc-ccccCcCHHHHHHhcC--CCCeEEE----EECCCcCcc---cHHHHHHHHH
Confidence            9999999999999999999999999994 4568899999999886  4455554    578999965   4778888899


Q ss_pred             HcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecC--ccccccCCCcceeEEeecChhhHHHHHHHHhhhh
Q 015435          209 SKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA--KNMGLYGERVGALSIVCKTEDVASRVESQLKLVI  286 (407)
Q Consensus       209 ~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~  286 (407)
                      +||+++|+|++|+.+..-+.  ..     +...  ..+++.||+  |.++.+|. .|++  +++++++.+++........
T Consensus       149 ~~~~~li~D~a~~~g~~~~~--~~-----~~~~--~d~~~~S~~~~K~l~~~g~-gg~~--~~~~~~~~~~~~~~~~~g~  216 (373)
T 3frk_A          149 KYNLKLIEDAAQAHGSLYKG--MK-----VGSL--GDAAGFSFYPAKNLGSLGD-GGAV--VTNDKDLAEKIKALSNYGS  216 (373)
T ss_dssp             HHTCEEEEECTTCTTCEETT--EE-----TTSS--SSEEEEECCTTSSSCCSSS-CEEE--EESCHHHHHHHHHHHBTTC
T ss_pred             HcCCEEEEECCcccCCEECC--Ee-----cccc--ccEEEEeCcCCCccCccce-eEEE--EeCCHHHHHHHHHHHhcCc
Confidence            99999999999875332110  10     1111  237778877  88864354 6777  6777666555444222111


Q ss_pred             hc--------ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cCCce---e
Q 015435          287 RP--------MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI-IKQIG---M  354 (407)
Q Consensus       287 ~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~---~  354 (407)
                      ..        .....+.+...+....+          +.+++..++.+++.+++.+.|++++    +.+. .+.+.   +
T Consensus       217 ~~~~~~~~~g~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~  282 (373)
T 3frk_A          217 EKKYHHIYKGFNSRLDELQAGFLRVKL----------KYLDKWNEERRKIAQKYIAGINNPN----VIIPVEADYAKHVW  282 (373)
T ss_dssp             SBTTBCCSCCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHCCCTT----EECCCCCTTEECCC
T ss_pred             ccCCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccCc----eEeccCCCCCceee
Confidence            00        01112232222222111          2244556667778888888887665    2222 11111   1


Q ss_pred             --EEecCCCHHHHHHhHhhccEEEcCC-----------------------------C--eEEecC-CCCCChhHHHHHHH
Q 015435          355 --FTFTGLNSEQVAFMTKEYHIYMTSD-----------------------------G--RISMAG-LSSKTVPHLTDAIH  400 (407)
Q Consensus       355 --~~~~~~~~~~~~~~l~~~gi~~~~g-----------------------------g--Ris~~~-~~~e~i~~~~~~l~  400 (407)
                        |.....+.+.+.+.|.++||.+.++                             +  |+++.. .+++|++++++.|+
T Consensus       283 ~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~  362 (373)
T 3frk_A          283 YTFVIRSEKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKIN  362 (373)
T ss_dssp             SSEEEEESSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             EEEEEEeCCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence              1112236677777777789988732                             1  666654 57899999999998


Q ss_pred             HHHHh
Q 015435          401 AAVTR  405 (407)
Q Consensus       401 ~~l~~  405 (407)
                      +...+
T Consensus       363 ~~~~~  367 (373)
T 3frk_A          363 AWKLE  367 (373)
T ss_dssp             TCC--
T ss_pred             HHhhh
Confidence            76543

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.92  E-value=6.2e-23  Score=196.29  Aligned_cols=257  Identities=15%  Similarity=0.120  Sum_probs=174.4

Q ss_pred             cccCCCC--CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH---
Q 015435           68 VKEYLPI--VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV---  142 (407)
Q Consensus        68 ~~~y~~~--~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~---  142 (407)
                      .+.|++.  ....++++.+++++ +.       +++++  |+||++|+.+++  ...+.+||+|+++.|+|......   
T Consensus        47 ~~~y~~~~~~~~~~l~~~la~~~-g~-------~~~~~--~~~gt~a~~~al--~~l~~~gd~vi~~~~~~~~~~~~~~~  114 (412)
T 2cb1_A           47 GYVYARQKDPTAKALEERLKALE-GA-------LEAVV--LASGQAATFAAL--LALLRPGDEVVAAKGLFGQTIGLFGQ  114 (412)
T ss_dssp             SCSBTTTCCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHH--HTTCCTTCEEEEETTCCHHHHHHHHH
T ss_pred             CcCcCCCCChHHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEeCCCchhHHHHHHH
Confidence            4556653  45889999999988 43       57999  999999999994  44477999999999999876654   


Q ss_pred             -HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc
Q 015435          143 -FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ  221 (407)
Q Consensus       143 -~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~  221 (407)
                       ++..|.+++.++.        |++++++.+.  ++++++++ ++|+||||.+.+   +++|+++|++||+++|+|++|.
T Consensus       115 ~~~~~g~~~~~~~~--------~~~~l~~~i~--~~~~~v~~-~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~  180 (412)
T 2cb1_A          115 VLSLMGVTVRYVDP--------EPEAVREALS--AKTRAVFV-ETVANPALLVPD---LEALATLAEEAGVALVVDNTFG  180 (412)
T ss_dssp             TTTTTTCEEEEECS--------SHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred             HHHHcCCEEEEECC--------CHHHHHHHhc--cCCeEEEE-eCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCc
Confidence             4467999888865        3889999886  55677666 899999999885   8888999999999999999998


Q ss_pred             cccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH-----------------------HHH
Q 015435          222 GFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA-----------------------SRV  278 (407)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~-----------------------~~~  278 (407)
                      .+....   ..       ...+..+++.|+||.++.+|.|+|++  ++.+++..                       ..+
T Consensus       181 ~~~~~~---~~-------~~~~~di~~~S~~K~~~~~~~~~G~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  248 (412)
T 2cb1_A          181 AAGALC---RP-------LAWGAHVVVESLTKWASGHGSVLGGA--VLSRETELWRNYPQFLQPDLKGQIPWEALRARCF  248 (412)
T ss_dssp             TTTTSC---CG-------GGGTCSEEEEETTTTTTCSSCCCCEE--EEECCCSGGGGSGGGGCC-------HHHHGGGHH
T ss_pred             cccccC---Cc-------cccCCeEEEECCcccccCCCCcEEEE--EEeccccccccccccccccccccchhhccchHHH
Confidence            763211   11       11246789999999999899999998  45542210                       022


Q ss_pred             HHHHhhhh-hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---------
Q 015435          279 ESQLKLVI-RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI---------  348 (407)
Q Consensus       279 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---------  348 (407)
                      ...++... .......+......+...++.          +....++..++.+++.+.|.+.+.   +..+         
T Consensus       249 ~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~----------l~~~~~~~~~~~~~l~~~L~~~~~---v~~v~~p~~~~~p  315 (412)
T 2cb1_A          249 PERVRTLGLSLCGMALSPFNAYLLFQGLET----------VALRVARMSETARFLAERLQGHPK---VKALRYPGLPEDP  315 (412)
T ss_dssp             HHHHHHHHTTTTCCCCCHHHHHHHHHHGGG----------HHHHHHHHHHHHHHHHHHHHTCTT---CSEEECTTSTTCT
T ss_pred             HHHHHHHHHHhcCCCCChHHhHHHHcCCch----------HHHHHHHHHHHHHHHHHHHHcCCC---eeEEECCCCCCCc
Confidence            33333322 111122334333333333321          233444566788888888887632   3311         


Q ss_pred             ---------cCCceeEEec-CCCHHHHHHhHhhccEEE
Q 015435          349 ---------IKQIGMFTFT-GLNSEQVAFMTKEYHIYM  376 (407)
Q Consensus       349 ---------~~~~~~~~~~-~~~~~~~~~~l~~~gi~~  376 (407)
                               ...++++.+. + +.+.+...+++.||.+
T Consensus       316 ~~~~~~~~~~~~~~iv~~~~~-~~~~~~~~l~~~~i~~  352 (412)
T 2cb1_A          316 AHRNARKYLASGGPILTLDLG-DLERASRFLGAIRLLK  352 (412)
T ss_dssp             THHHHHHHCSSSCSEEEEECS-SHHHHHHHHHHCSSEE
T ss_pred             cHHHHHHhCCCCceEEEEEeC-CHHHHHHHHHhCCeee
Confidence                     1234444432 4 6677888888888886

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.92  E-value=2e-25  Score=209.75  Aligned_cols=278  Identities=14%  Similarity=0.097  Sum_probs=185.8

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc-ccHHHHHHHHHHhhcC---CCeEEecCCCCCChHHHHhhcCceeeE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG-TGSLRVGAEFLARHYH---QLTIYIPQPTWGNHPKVFTLAGLSVKT  152 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~-t~a~~~~~~~~~~~~~---gd~Vi~~~p~y~~~~~~~~~~G~~~~~  152 (407)
                      ..++++.+++++ +..    ++++|++  |+|+ |+++.+++  ...+.+   ||.|+++.++|.. ...++..| +++.
T Consensus        50 ~~~l~~~la~~~-g~~----~~~~v~~--~~g~gt~al~~~~--~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~  118 (360)
T 1w23_A           50 HEQAQNLLRELL-QIP----NDYQILF--LQGGASLQFTMLP--MNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHI  118 (360)
T ss_dssp             HHHHHHHHHHHH-TCC----TTEEEEE--ESSHHHHHHHHHH--HHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEE
T ss_pred             HHHHHHHHHHHh-CCC----CCceEEE--ECCcchHHHHHHH--HHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEE
Confidence            567788888877 431    2368999  9999 99999984  444544   5667777666653 34457789 9999


Q ss_pred             EEeecCCCCCcChhhHHH-HHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          153 YRYYDPATRGLNFQGLLE-DLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~-~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      ++++ ++++.+|++++++ +++  ++++++++ ++|+||||.+++  ++      +++||+++|+|++|..+... .  +
T Consensus       119 v~~~-~~~~~~d~~~l~~~~i~--~~~k~v~~-~~~~nptG~~~~--~i------~~~~~~~li~D~a~~~~~~~-~--~  183 (360)
T 1w23_A          119 AAST-KANSYQSIPDFSEFQLN--ENDAYLHI-TSNNTIYGTQYQ--NF------PEINHAPLIADMSSDILSRP-L--K  183 (360)
T ss_dssp             EEEC-GGGTSCSCCCGGGCCCC--TTEEEEEE-ESEETTTTEECS--SC------CCCCSSCEEEECTTTTTSSC-C--C
T ss_pred             eecc-cccCcCCccchHhhccC--CCCCEEEE-eCCCCCcceecc--cc------cccCCceEEEechhhcCCCC-c--C
Confidence            9984 3223478899988 775  55677666 899999999987  32      33899999999999766532 1  1


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh------------hcccCCCChhHHH
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI------------RPMYSSPPIHGAS  299 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~  299 (407)
                         +   .. .  .++++|+||.++++|  +||+  +++     +.+.+.+....            .....+++...+.
T Consensus       184 ---~---~~-~--di~~~s~sK~~~~~G--~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (360)
T 1w23_A          184 ---V---NQ-F--GMIYAGAQKNLGPSG--VTVV--IVK-----KDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIY  245 (360)
T ss_dssp             ---G---GG-C--SEEEEETTTTTSCTT--CEEE--EEE-----HHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHH
T ss_pred             ---c---cc-C--CEEEEEcccccCCCC--cEEE--EEc-----HHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHH
Confidence               1   11 1  378999999999666  8998  566     33333332211            1112345555555


Q ss_pred             HHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cC--CceeEEecCCC----HHHHHHhHhh
Q 015435          300 IVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDWSHI-IK--QIGMFTFTGLN----SEQVAFMTKE  371 (407)
Q Consensus       300 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~--~~~~~~~~~~~----~~~~~~~l~~  371 (407)
                      ++..+++...     .. .+++.+++++++++++.+.|++.+.  .+... .+  .++++.|+.+.    .+.+.+.|.+
T Consensus       246 ~~~~al~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  318 (360)
T 1w23_A          246 MLRNVLDWIK-----DLGGAEAIAKQNEEKAKIIYDTIDESNG--FYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKE  318 (360)
T ss_dssp             HHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHHTTTT--SSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHccC--cccccCCchhccCcEEEEEcCCCccHHHHHHHHHH
Confidence            5555554221     01 3677888999999999999988752  01322 12  34656666553    2233344566


Q ss_pred             ccEEEcCC----C--eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          372 YHIYMTSD----G--RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       372 ~gi~~~~g----g--Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                      +||.+.++    +  ||+++. .+++++++++++|++++++
T Consensus       319 ~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          319 QGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             TTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence            89999886    2  999874 3778999999999998764

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.92  E-value=7.2e-25  Score=206.17  Aligned_cols=310  Identities=15%  Similarity=0.132  Sum_probs=193.6

Q ss_pred             cccchhHHHHHHHHhccccc------cccCCCCC--CcHHHHHHHHHHHhCCCCCCCCCC-ce-EEeecCCcccHHHHHH
Q 015435           48 PLVLNVVRKAEQLLVNDQSR------VKEYLPIV--GLVDFNKLSAKLILGADSPAIKDN-RV-TTVQCLSGTGSLRVGA  117 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~------~~~y~~~~--g~~~l~~~~a~~~~~~~~~~~~~~-~i-~~~~t~g~t~a~~~~~  117 (407)
                      +.|+.+++++.+.+......      ..+|.+..  -..++++.+++++ +.     +++ ++ ++  |+|+|+++.+++
T Consensus        14 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~-----~~~~~~i~~--t~g~t~a~~~~~   85 (362)
T 2c0r_A           14 ALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALL-GN-----PTGYKVLFI--QGGASTQFAMIP   85 (362)
T ss_dssp             CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHT-TC-----CSSEEEEEE--SSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHh-CC-----CCCcEEEEE--CCCchHHHHHHH
Confidence            55666776666655310000      12222211  1344555555555 32     222 54 67  899999999994


Q ss_pred             HHHHhhcCCCeEEecCCCCCCh--HHHHhhcCceeeEEEeecCCCC--CcChhhHHHHHHcCCCCcEEEEecCCCCCCCC
Q 015435          118 EFLARHYHQLTIYIPQPTWGNH--PKVFTLAGLSVKTYRYYDPATR--GLNFQGLLEDLRAAPSGAIVLLHACAHNPTGV  193 (407)
Q Consensus       118 ~~~~~~~~gd~Vi~~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~--~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~  193 (407)
                        ...+.+||+|+++++.+..+  ...++..| +++.++...+.++  .+|.++++  ++  ++++++++ ++|+||||+
T Consensus        86 --~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~--~~t~~v~~-~~~~n~tG~  157 (362)
T 2c0r_A           86 --MNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ--DNAAYLHL-TSNETIEGA  157 (362)
T ss_dssp             --HHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC--TTEEEEEE-ESEETTTTE
T ss_pred             --HhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC--CCcCEEEE-eCCcCccce
Confidence              44578999999887664443  35667789 9999998411223  34666554  43  55677666 889999999


Q ss_pred             CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChh
Q 015435          194 DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTED  273 (407)
Q Consensus       194 ~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~  273 (407)
                      +++  ++++|      +|+++|+|++|..+... .  +      +.. .  .+++.|+||.+|++|  +||+  +++ ++
T Consensus       158 ~~~--~l~~i------~~~~vivD~a~~~~~~~-~--~------~~~-~--d~~~~s~~K~~g~~G--~G~l--~~~-~~  212 (362)
T 2c0r_A          158 QFK--AFPDT------GSVPLIGDMSSDILSRP-F--D------LNQ-F--GLVYAGAQKNLGPSG--VTVV--IVR-ED  212 (362)
T ss_dssp             ECS--SCCCC------TTSCEEEECTTTTTSSC-C--C------GGG-C--SEEEEETTTTTCCSS--CEEE--EEE-GG
T ss_pred             ecc--ccccc------CCCEEEEEChhhccCCc-c--c------hhH-C--cEEEEeccccccCcC--cEEE--EEc-HH
Confidence            755  45555      89999999999755431 1  1      111 1  477889999999888  8999  455 33


Q ss_pred             hHHHHHHHHhh--------hhhcccCCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435          274 VASRVESQLKL--------VIRPMYSSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGD  344 (407)
Q Consensus       274 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~  344 (407)
                      +.+.+......        .......+++...+.++..+++...     .. .+++.+++++++++++.+.|++.+.   
T Consensus       213 ~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~---  284 (362)
T 2c0r_A          213 LVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIE-----ERGGLEGVQQANRKKASLIYDAIDQSGG---  284 (362)
T ss_dssp             GSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHHTSTT---
T ss_pred             HHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHHHHHHcCC---
Confidence            32222110000        0112234677777887777775321     11 4678889999999999999998761   


Q ss_pred             c-cccc---CCceeEEecCC----CHHHHHHhHhhccEEEcCC----C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          345 W-SHII---KQIGMFTFTGL----NSEQVAFMTKEYHIYMTSD----G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       345 ~-~~~~---~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      + ....   ..++.+.++.+    +.+.+.+.|+++||.+.+|    +  |||++. .++++++++++.|+++++++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~  361 (362)
T 2c0r_A          285 FYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSR  361 (362)
T ss_dssp             SSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            2 3221   11223334433    2344555567789988775    2  999874 36799999999999988765

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.91  E-value=2.8e-23  Score=199.01  Aligned_cols=321  Identities=15%  Similarity=0.142  Sum_probs=193.8

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc------CCCCCCcHHHHH----HHHHHHhCCCCCCCCCCce
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE------YLPIVGLVDFNK----LSAKLILGADSPAIKDNRV  101 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------y~~~~g~~~l~~----~~a~~~~~~~~~~~~~~~i  101 (407)
                      +.|+|..+.     . +.++.+++++.+.+.  ......      |.......++++    .+++++ +.     ++++|
T Consensus        26 ~~i~l~~~~-----~-~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~-----~~~~i   91 (417)
T 3n0l_A           26 EGLEMIASE-----N-FTLPEVMEVMGSILT--NKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLF-NC-----KFANV   91 (417)
T ss_dssp             HSEECCTTC-----C-CCCHHHHHHHTBGGG--GCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TC-----SEEEC
T ss_pred             cCeeeeccc-----C-CCCHHHHHHHhhhhh--ccccccCCCccccccchHHHHHHHHHHHHHHHHh-CC-----CCcce
Confidence            567775442     2 446566666555552  111112      222223344444    566655 42     23557


Q ss_pred             EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhhcC--ceeeEEEeecCCCCCcChhhHHHHHHcCC
Q 015435          102 TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTLAG--LSVKTYRYYDPATRGLNFQGLLEDLRAAP  176 (407)
Q Consensus       102 ~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~~G--~~~~~v~~~~~~~~~~d~~~l~~~i~~~~  176 (407)
                      ++  ++| ++++.+++  ...+.+||+|++++|+|..+..   .+...|  ..++.++.  +.++.+|++++++.+.+ +
T Consensus        92 ~~--~sG-t~a~~~~~--~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~d~~~l~~~i~~-~  163 (417)
T 3n0l_A           92 QP--NSG-SQANQGVY--AALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGV--ELDGRIDYEKVREIAKK-E  163 (417)
T ss_dssp             CC--SSH-HHHHHHHH--HHHSCTTCEEEEECC----------------CCSEEEEECC--CTTSSCCHHHHHHHHHH-H
T ss_pred             Ee--ccH-HHHHHHHH--HHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccC--CCCCCcCHHHHHHHHHh-c
Confidence            66  777 89999985  3447899999999999987655   333434  44555555  35567999999999973 2


Q ss_pred             CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-ccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      +++++++ ++|+|  |++.+   +++|+++|++||++||+|+++ .++.+.+....        ......+++.|+||.+
T Consensus       164 ~~~~v~~-~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--------~~~~~di~~~s~sK~l  229 (417)
T 3n0l_A          164 KPKLIVC-GASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS--------PFPYAHVVSSTTHKTL  229 (417)
T ss_dssp             CCSEEEE-CCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--------CTTTCSEEEEESSTTT
T ss_pred             CCeEEEE-CCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCC--------ccccceEEEeeCcccc
Confidence            4667665 66676  77776   888899999999999999995 33332211000        0012358899999987


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhhhhhccc-CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMY-SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                        +|+|.||+  +++++++.+.+..    ...... .+++...+.++..++...     +.+.+++.++++.++++++.+
T Consensus       230 --~g~~~G~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~aa~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~~  296 (417)
T 3n0l_A          230 --RGPRGGII--MTNDEELAKKINS----AIFPGIQGGPLMHVIAAKAVGFKFN-----LSDEWKVYAKQVRTNAQVLAN  296 (417)
T ss_dssp             --CSCSCEEE--EESCHHHHHHHHH----HHTTTTCSSCCHHHHHHHHHHHHHH-----TSHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCeeEE--EECCHHHHHHHhh----hhCCcccCCcHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHH
Confidence              68899998  6776665555433    222222 233444444443333321     113456778888899999999


Q ss_pred             HHHhcCCCCCccccc-CCceeEEecC-----CCHHHHHHhHhhccEEEcCC-------------C-eEEecC-----CCC
Q 015435          335 ALSARGTPGDWSHII-KQIGMFTFTG-----LNSEQVAFMTKEYHIYMTSD-------------G-RISMAG-----LSS  389 (407)
Q Consensus       335 ~l~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~l~~~gi~~~~g-------------g-Ris~~~-----~~~  389 (407)
                      .|++.+    +.+.. +..+.+.|+.     ++.+.+.++|+++||.+.++             + |+++..     +++
T Consensus       297 ~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~  372 (417)
T 3n0l_A          297 VLMDRK----FKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKE  372 (417)
T ss_dssp             HHHHTT----CEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCH
T ss_pred             HHHhCC----ceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCH
Confidence            998866    55443 2233445542     36777888888899998742             1 666542     357


Q ss_pred             CChhHHHHHHHHHHHh
Q 015435          390 KTVPHLTDAIHAAVTR  405 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~  405 (407)
                      +++++++++|++++++
T Consensus       373 ~~i~~~~~~l~~~l~~  388 (417)
T 3n0l_A          373 KEMEIVSNYIADILDD  388 (417)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999998864

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.86  E-value=1.4e-26  Score=222.66  Aligned_cols=336  Identities=13%  Similarity=0.059  Sum_probs=213.9

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL  107 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~  107 (407)
                      ..++++|||..|....+.| ..++.+++++.+++.  ......| +.....++.+.+++++.+       .+.+++  ++
T Consensus        97 ~dG~~yiD~~~~~~~~~lG-h~~p~V~~Av~~q~~--~~~~~~~-~~~~~~~Lae~L~~~~p~-------~~~v~~--~n  163 (465)
T 2yky_A           97 VDGHAYVNFLGEYTAGLFG-HSHPVIRAAVERALA--VGLNLST-QTENEALFAEAVCDRFPS-------IDLVRF--TN  163 (465)
Confidence            4578999999998755566 557788888877775  2222334 445567788888887621       278999  99


Q ss_pred             CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCc--eeeEEEeecCCCCCcChhhHHHHHHcC-CCCcE
Q 015435          108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGL--SVKTYRYYDPATRGLNFQGLLEDLRAA-PSGAI  180 (407)
Q Consensus       108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~--~~~~v~~~~~~~~~~d~~~l~~~i~~~-~~~~~  180 (407)
                      ||++|++.++++......+++|++.+++|.++.....    ..|+  .++.+|.       .|++++++.+.+. +++++
T Consensus       164 SGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aa  236 (465)
T 2yky_A          164 SGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAA  236 (465)
Confidence            9999999997665444566899999999987665433    2233  2233322       3778888888642 24556


Q ss_pred             EEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC
Q 015435          181 VLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG  259 (407)
Q Consensus       181 v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  259 (407)
                      +++ ...+++||.+ .+.+.+++|+++|++||++||+||+|. +..+    .......+    +...-+.+|||.++. |
T Consensus       237 vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g----~~~a~~~~----gv~pDi~t~sK~lg~-G  305 (465)
T 2yky_A          237 ILV-EPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLS----GGGAQEML----GISADLTTLGKYIGG-G  305 (465)
Confidence            555 3335569965 568899999999999999999999999 6322    11122111    111224489999995 9


Q ss_pred             CCcceeEEeecChhhHHHHHHH-HhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015435          260 ERVGALSIVCKTEDVASRVESQ-LKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA  338 (407)
Q Consensus       260 ~r~G~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  338 (407)
                      +|+||+  +++ +++.+.+... ........+++.+++++.++.+.|+...      +  +...++++++.+++.+.|++
T Consensus       306 ~piG~v--~~~-~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~------~--~~~~~~~~~~~~~l~~~L~~  374 (465)
T 2yky_A          306 MSFGAF--GGR-RDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY------T--RQAASDLSASGDRFRANLNR  374 (465)
Confidence            999998  455 4444433221 0001223445778888888877776431      1  23456666677777777765


Q ss_pred             cCCCCCcccccCCceeEEecCCCH-----------------HHHHHhHhhccEEEcCCC--eEEecCCCCCChhHHHHHH
Q 015435          339 RGTPGDWSHIIKQIGMFTFTGLNS-----------------EQVAFMTKEYHIYMTSDG--RISMAGLSSKTVPHLTDAI  399 (407)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~gi~~~~gg--Ris~~~~~~e~i~~~~~~l  399 (407)
                      +.....+....+..|.+.++.+..                 ..+...+.++||.+.|++  .+++. .+++++++++++|
T Consensus       375 ~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~~s~~-~t~edid~~l~~l  453 (465)
T 2yky_A          375 IAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMYALSLE-IADAGRDAFAEAL  453 (465)
Confidence            421101222222334444443311                 123333445899999876  35665 4899999999999


Q ss_pred             HHHHHhh
Q 015435          400 HAAVTRM  406 (407)
Q Consensus       400 ~~~l~~~  406 (407)
                      +++++++
T Consensus       454 ~~~l~~~  460 (465)
T 2yky_A          454 ADFIGEQ  460 (465)
Confidence            9988754

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.91  E-value=3.5e-24  Score=208.82  Aligned_cols=334  Identities=17%  Similarity=0.167  Sum_probs=204.0

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc------CCCCCCcHHHHHHHHHHHhCCCCCCCCC--CceE
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE------YLPIVGLVDFNKLSAKLILGADSPAIKD--NRVT  102 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------y~~~~g~~~l~~~~a~~~~~~~~~~~~~--~~i~  102 (407)
                      .+.|+|..|.     . +.++.+.+++.+.+. +. ...+      |....+.+++++.+++++....+...++  .+|+
T Consensus        44 ~~~i~L~a~e-----~-~~~~~V~eA~~~~l~-~~-~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~  115 (483)
T 1rv3_A           44 RVGLELIASE-----N-FASRAVLEALGSCLN-NK-YSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQ  115 (483)
T ss_dssp             HSSEECCTTC-----C-CCCHHHHHHHTSGGG-TC-CCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECC
T ss_pred             hcCeEEEcCC-----C-CCCHHHHHHHHHHHh-cc-CcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEE
Confidence            4688887553     2 455566655555553 11 1112      3333345566644444442222222111  2366


Q ss_pred             EeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH--------HhhcCceeeEEEee-cCCCCCcChhhHHHHHH
Q 015435          103 TVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV--------FTLAGLSVKTYRYY-DPATRGLNFQGLLEDLR  173 (407)
Q Consensus       103 ~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~--------~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~  173 (407)
                      +  ++|+ +++.+++  ...+.+||+|++++|.|.++...        +...|..++.+++. +++++.+|++++++.+.
T Consensus       116 ~--~sGs-~an~~~~--~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~  190 (483)
T 1rv3_A          116 P--YSGS-PANFAVY--TALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENAR  190 (483)
T ss_dssp             C--SSHH-HHHHHHH--HHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH
T ss_pred             E--CCcH-HHHHHHH--HHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHh
Confidence            6  7776 8887763  45588999999999998877643        33445334444442 34567899999999997


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc-cccCCCCCchhHHHHHHHHcCCcEEEEEecC
Q 015435          174 AAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ-GFASGSLDADAQSVRMFVADGGECLVAQSYA  252 (407)
Q Consensus       174 ~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  252 (407)
                      + +++++|++  +++||+ .+++   +++|+++|+++|++||+|++|. ++...+...  .+   + .  ...+++.|++
T Consensus       191 ~-~~tklIi~--~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~--~p---~-~--~~div~~s~~  255 (483)
T 1rv3_A          191 L-FHPKLIIA--GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVP--SP---F-E--HCHVVTTTTH  255 (483)
T ss_dssp             H-HCCSEEEE--CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC--CG---G-G--TCSEEEEESS
T ss_pred             h-cCCcEEEE--eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCC--CC---C-C--CCcEEEecCc
Confidence            3 24566666  678888 6665   7888899999999999999975 333222110  11   1 1  2347889999


Q ss_pred             ccccccCCCcceeEEeecChhhH---H-------HHHHHHhhhhhcc-cCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          253 KNMGLYGERVGALSIVCKTEDVA---S-------RVESQLKLVIRPM-YSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       253 K~~~~~G~r~G~~~~v~~~~~~~---~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      |.+  +|+|.||+  +++++...   .       .+...+....... ..+++...+.+...+++...     ...+++.
T Consensus       256 K~l--~GprgG~i--~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~-----~~~~~~~  326 (483)
T 1rv3_A          256 KTL--RGCRAGMI--FYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM-----TPEFKEY  326 (483)
T ss_dssp             GGG--CCCSCEEE--EEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT-----SHHHHHH
T ss_pred             ccC--CCCCceEE--EEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHh-----ChhHHHH
Confidence            986  58899999  57654110   0       1122222221111 22344444444333443211     1235677


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccCC-ceeEEec-----CCCHHHHHHhHhhccEEEc----CC--------C-eE
Q 015435          322 ADRIISMRQQLFDALSARGTPGDWSHIIKQ-IGMFTFT-----GLNSEQVAFMTKEYHIYMT----SD--------G-RI  382 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~l~~~gi~~~----~g--------g-Ri  382 (407)
                      ++++.++++++.+.|.+.|    +.+..+. .+.+.|+     +++.+.+.++|++.||.+.    ||        + ||
T Consensus       327 ~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRi  402 (483)
T 1rv3_A          327 QRQVVANCRALSAALVELG----YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRL  402 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcC----CEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEe
Confidence            8889999999999999887    5655442 2344554     3467777888888999998    64        1 99


Q ss_pred             EecCC-C----CCChhHHHHHHHHHHHh
Q 015435          383 SMAGL-S----SKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       383 s~~~~-~----~e~i~~~~~~l~~~l~~  405 (407)
                      +++.. +    ++++++++++|+++++.
T Consensus       403 s~~~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          403 GTPALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             ECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence            88632 3    79999999999998764

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.91  E-value=3e-23  Score=197.40  Aligned_cols=301  Identities=11%  Similarity=0.028  Sum_probs=196.5

Q ss_pred             cchhHHHHHHHHhccccccccCCCCCC--cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hcCC
Q 015435           50 VLNVVRKAEQLLVNDQSRVKEYLPIVG--LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQ  126 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g--~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~g  126 (407)
                      ++++.+++.+.+.  .    +|.+..|  ..++++++++++ +.       +++++  |+|+++++.+++  ... +.+|
T Consensus        11 ~~~v~~a~~~~~~--~----~~~~~~g~~~~~l~~~la~~~-~~-------~~v~~--~~ggt~al~~~~--~~l~~~~g   72 (394)
T 1o69_A           11 GGNELKYIEEVFK--S----NYIAPLGEFVNRFEQSVKDYS-KS-------ENALA--LNSATAALHLAL--RVAGVKQD   72 (394)
T ss_dssp             -CCHHHHHHHHHH--H----TTTSCTTHHHHHHHHHHHHHH-CC-------SEEEE--ESCHHHHHHHHH--HHTTCCTT
T ss_pred             CHHHHHHHHHHHH--c----CCccCCChHHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHcCCCCC
Confidence            4455555555554  1    3656567  899999999998 53       68999  999999999994  433 5789


Q ss_pred             CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC-CCcEEEEecCCCCCCCCCCCHHHHHHHHH
Q 015435          127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP-SGAIVLLHACAHNPTGVDPTLEQWEQIRQ  205 (407)
Q Consensus       127 d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~~~~~~~l~~i~~  205 (407)
                      |+|+++.|+|..+...++..|.+++.++.+  .++.+|++++++.+.+.+ +++++++ +   ||||.   ..++++|.+
T Consensus        73 d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~-~---~~~G~---~~~l~~i~~  143 (394)
T 1o69_A           73 DIVLASSFTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALIL-T---HLYGN---AAKMDEIVE  143 (394)
T ss_dssp             CEEEEESSSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEE-E---CGGGC---CCCHHHHHH
T ss_pred             CEEEECCCccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEE-E---CCCCC---hhhHHHHHH
Confidence            999999999999999999999999999983  457799999999998422 4677777 3   38996   457888899


Q ss_pred             HHHHcCceeeeccccc-cccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhh
Q 015435          206 LMRSKGLLPFFDSAYQ-GFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL  284 (407)
Q Consensus       206 ~~~~~~~~li~D~~y~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~  284 (407)
                      +|+++|+++|+|++|+ ++.+.+.  ..      ....+  +.+.||||..+++|.|+||+  +++++++.+.+......
T Consensus       144 l~~~~~~~li~Dea~~~g~~~~~~--~~------~~~~~--~~~~s~s~~K~l~~~~~G~~--~~~~~~l~~~l~~~~~~  211 (394)
T 1o69_A          144 ICKENDIVLIEDAAEALGSFYKNK--AL------GTFGE--FGVYSYNGNKIITTSGGGML--IGKNKEKIEKARFYSTQ  211 (394)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTE--ET------TSSSS--EEEEECCTTSSSCCSSCEEE--EESCHHHHHHHHHHTBT
T ss_pred             HHHHcCCEEEEECcCcccceeCCc--cc------ccccC--cEEEEEeCCccCCCCCceEE--EECCHHHHHHHHHHHHh
Confidence            9999999999999998 5554321  10      01112  45555644434457799999  67666665555442111


Q ss_pred             hhhcc-cC---------CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC----
Q 015435          285 VIRPM-YS---------SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK----  350 (407)
Q Consensus       285 ~~~~~-~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----  350 (407)
                      ..... ..         ..+.....++...++          .+++..++++++++++.+.|++. .    .+..+    
T Consensus       212 ~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~----------~l~~~~~~~~~~~~~l~~~L~~~-~----~~~~~~~~~  276 (394)
T 1o69_A          212 ARENCLHYEHLDYGYNYRLSNVLGAIGVAQME----------VLEQRVLKKREIYEWYKEFLGEY-F----SFLDELENS  276 (394)
T ss_dssp             CCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT----------THHHHHHHHHHHHHHHHHHHTTT-E----ECCCCCTTE
T ss_pred             ccccCccccccccCcccCcCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccc-c----cccCCCCCC
Confidence            10000 00         012222222222222          24456677888889999988764 2    21111    


Q ss_pred             Ccee--E-EecC-----------------------CCHHHHHHhHhhccEEEcCCC------------------------
Q 015435          351 QIGM--F-TFTG-----------------------LNSEQVAFMTKEYHIYMTSDG------------------------  380 (407)
Q Consensus       351 ~~~~--~-~~~~-----------------------~~~~~~~~~l~~~gi~~~~gg------------------------  380 (407)
                      ..++  + ..++                       .+.+.+.+.|.++||.+.++.                        
T Consensus       277 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~  356 (394)
T 1o69_A          277 RSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFF  356 (394)
T ss_dssp             ECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHH
T ss_pred             cceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHh
Confidence            1232  1 1222                       134556666677899988761                        


Q ss_pred             -----eEEecCCCCCChhHHHHHHHHHHH
Q 015435          381 -----RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       381 -----Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                           |.+....+++|++++++.|+++++
T Consensus       357 ~~~~~~~~~~~~t~edi~~~~~~l~~~~~  385 (394)
T 1o69_A          357 QKGICLPSGTAMSKDDVYEISKLILKSIK  385 (394)
T ss_dssp             HHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             cCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence                 111112578999999999998764

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.91  E-value=8.4e-24  Score=205.63  Aligned_cols=295  Identities=16%  Similarity=0.094  Sum_probs=193.0

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCC---CeEEecCCCCCChHH----HHhhcCce
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ---LTIYIPQPTWGNHPK----VFTLAGLS  149 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~g---d~Vi~~~p~y~~~~~----~~~~~G~~  149 (407)
                      ..++++.+++++ +.     ++++|++  |+|+|+++.+++  ...+.+|   ++|+++.|+|++...    .++..|++
T Consensus       113 ~~~l~~~la~~~-g~-----~~~~v~~--t~g~t~al~~~~--~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~  182 (465)
T 3e9k_A          113 DESIVGLMKDIV-GA-----NEKEIAL--MNALTVNLHLLM--LSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLN  182 (465)
T ss_dssp             THHHHGGGHHHH-TC-----CGGGEEE--CSCHHHHHHHHH--HHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHc-CC-----CcCCEEE--ECCHHHHHHHHH--HHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCc
Confidence            467888899987 43     2479999  999999999984  3335554   459999999987544    55678888


Q ss_pred             eeE-----EEeecCCCCCcChhhHHHHHHcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccc
Q 015435          150 VKT-----YRYYDPATRGLNFQGLLEDLRAA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGF  223 (407)
Q Consensus       150 ~~~-----v~~~~~~~~~~d~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~  223 (407)
                      ++.     ++.  +.++.+|++++++++.+. ++++++++ ++|+||||.+++   +++|.++|++||+++|+|++++..
T Consensus       183 ~~~~~v~~~~~--~~~~~~d~~~l~~~i~~~~~~~~lv~~-~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g  256 (465)
T 3e9k_A          183 IEESMRMIKPR--EGEETLRIEDILEVIEKEGDSIAVILF-SGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVG  256 (465)
T ss_dssp             HHHHEEEECCC--TTCSSCCHHHHHHHHHHHGGGEEEEEE-ESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTT
T ss_pred             ceeeeEEEecC--CCCCccCHHHHHHHHHhcCCCeEEEEE-eCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcC
Confidence            642     233  345678999999999743 34556655 999999999987   677888899999999999998643


Q ss_pred             cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhh---------h---------
Q 015435          224 ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL---------V---------  285 (407)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~---------~---------  285 (407)
                      ... .     .+..    .+..++++|++|.++....++|++  ++. +++.+.+...+..         +         
T Consensus       257 ~~~-~-----~~~~----~~~D~~~~s~~K~l~~gp~~~g~l--~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  323 (465)
T 3e9k_A          257 NVE-L-----YLHD----WGVDFACWCSYKYLNAGAGGIAGA--FIH-EKHAHTIKPALVGWFGHELSTRFKMDNKLQLI  323 (465)
T ss_dssp             TSC-C-----CHHH----HTCCEEEECSSSTTCCCTTCCCEE--EEC-GGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBC
T ss_pred             CcC-C-----chhh----cCCCEEEECcccccccCCCceEEE--EEc-HHHHhhcCCcccCccCCCCCcccccCCCcCcC
Confidence            321 1     1111    234588899999994222368888  454 4433222111100         0         


Q ss_pred             ---hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------CCcccccCC----
Q 015435          286 ---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP-------GDWSHIIKQ----  351 (407)
Q Consensus       286 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~~~~~----  351 (407)
                         .+....+++..++.++..+++...   .  ..+++++++++++++++.+.|++.-.+       .++.+..|.    
T Consensus       324 ~~~~~~~~gt~~~~~~~a~~aal~~~~---~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~  398 (465)
T 3e9k_A          324 PGVCGFRISNPPILLVCSLHASLEIFK---Q--ATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEE  398 (465)
T ss_dssp             SSGGGGCCSCCCHHHHHHHHHHHHHHH---H--HCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGG
T ss_pred             CChHHhccCCccHHHHHHHHHHHHHHH---H--cCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhh
Confidence               011112555555666555554221   0  126788899999999999999873100       016665553    


Q ss_pred             -ceeEEec-CCCHHHHHHhHhhccEEEcCC--C--eEEe--cCCCCCChhHHHHHHHHHHHh
Q 015435          352 -IGMFTFT-GLNSEQVAFMTKEYHIYMTSD--G--RISM--AGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       352 -~~~~~~~-~~~~~~~~~~l~~~gi~~~~g--g--Ris~--~~~~~e~i~~~~~~l~~~l~~  405 (407)
                       ++++.|. +.+.+.+.+.|.++||.+...  +  ||++  ...++++++++++.|++++++
T Consensus       399 ~g~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~  460 (465)
T 3e9k_A          399 RGCQLTITFSVPNKDVFQELEKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS  460 (465)
T ss_dssp             BCSCEEEEECCTTCCHHHHHHTTTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred             cccEEEEEecCCHHHHHHHHHHCCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence             4444432 333444555556679988654  2  9987  235789999999999998864

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.91  E-value=7.8e-23  Score=194.17  Aligned_cols=212  Identities=14%  Similarity=0.116  Sum_probs=151.8

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCce
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGLS  149 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~~  149 (407)
                      .....++|+++++++ +.       ++.++  ++||++++.++++   .+.+||+|+++.|+|.+...    .++..|.+
T Consensus        54 ~~~~~~lr~~la~~~-g~-------~~~i~--~~sGt~a~~~al~---~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~  120 (393)
T 1n8p_A           54 NPNRENLERAVAALE-NA-------QYGLA--FSSGSATTATILQ---SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE  120 (393)
T ss_dssp             CHHHHHHHHHHHHHT-TC-------SEEEE--ESCHHHHHHHHHH---TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSC
T ss_pred             ChhHHHHHHHHHHHh-CC-------CcEEE--ECChHHHHHHHHH---HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcE
Confidence            456789999999988 43       34556  6666999999953   57799999999999985544    45678999


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc----CceeeeccccccccC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK----GLLPFFDSAYQGFAS  225 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~----~~~li~D~~y~~~~~  225 (407)
                      ++.+|.+       | +++++++.  ++++++++ ++|+||||.+++   +++|+++|++|    |+++|+|++|..+..
T Consensus       121 v~~v~~~-------d-~~l~~~i~--~~t~lv~~-~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~  186 (393)
T 1n8p_A          121 TSFTNDL-------L-NDLPQLIK--ENTKLVWI-ETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI  186 (393)
T ss_dssp             CEEESSH-------H-HHHHHHSC--SSEEEEEE-CSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred             EEEeCCC-------h-HHHHHhcc--cCceEEEE-ECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence            9988762       6 88888886  55677666 999999999986   78888889999    999999999987765


Q ss_pred             CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHH
Q 015435          226 GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI  304 (407)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (407)
                      ..    .      .. .+..+++.|+||.++.+|+|+ ||+  +++++++.+.+..    .........+...+.++...
T Consensus       187 ~~----~------~~-~~~di~~~S~sK~~g~~G~rigG~~--~~~~~~~~~~l~~----~~~~~g~~~~~~~~~~~~~~  249 (393)
T 1n8p_A          187 SN----P------LN-FGADIVVHSATKYINGHSDVVLGVL--ATNNKPLYERLQF----LQNAIGAIPSPFDAWLTHRG  249 (393)
T ss_dssp             CC----G------GG-GTCSEEEEETTTTTTCSSCCCCEEE--EESCHHHHHHHHH----HHHHHCCCCCHHHHHHHHHH
T ss_pred             CC----H------HH-cCCeEEEEECcccccCCCCceeEEE--EeCCHHHHHHHHH----HHHhcCCCCCHHHHHHHHhc
Confidence            31    1      11 146799999999999999999 887  5655655554433    32222334455555555545


Q ss_pred             hcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435          305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR  339 (407)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  339 (407)
                      ++..          ....++..++.+.+.+.|++.
T Consensus       250 l~~~----------~~~~~~~~~~~~~l~~~L~~~  274 (393)
T 1n8p_A          250 LKTL----------HLRVRQAALSANKIAEFLAAD  274 (393)
T ss_dssp             HTTH----------HHHHHHHHHHHHHHHHHHTSC
T ss_pred             cchH----------HHHHHHHHHHHHHHHHHHHhC
Confidence            5432          233344556666777777654

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.91  E-value=2e-23  Score=200.47  Aligned_cols=267  Identities=18%  Similarity=0.193  Sum_probs=168.9

Q ss_pred             EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC---hHHHHhhcCc--eeeEEEeecCCCCCcChhhHHHHHHcCC
Q 015435          102 TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN---HPKVFTLAGL--SVKTYRYYDPATRGLNFQGLLEDLRAAP  176 (407)
Q Consensus       102 ~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~---~~~~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~i~~~~  176 (407)
                      ++  ++||++++..++  ...+.+||+|++++|+|..   +.......|.  +++.++. +++++.+|++++++.+.+ +
T Consensus        98 v~--~~~Gs~a~~~al--~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~-~  171 (425)
T 3ecd_A           98 VQ--PHSGAQANGAVM--LALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGV-SRDTMLIDYDQVEALAQQ-H  171 (425)
T ss_dssp             CC--CSSHHHHHHHHH--HHHCCTTCEEEEECC------------------CEEEEECC-CTTTSSCCHHHHHHHHHH-H
T ss_pred             ee--cCchHHHHHHHH--HHccCCCCEEEEcccccccceecchhhhhcccceeeeecCC-CcccCccCHHHHHHHHhh-c
Confidence            45  888999999885  3347899999999999987   2222224455  4445555 234578999999999863 2


Q ss_pred             CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-ccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      +++++++ ++|+||+     ..++++|+++|++||++||+||+| .++.+.+....  .    ..  ...+++.|+||.+
T Consensus       172 ~~~~v~~-~~~~~~~-----~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~--~----~~--~~di~~~s~sK~l  237 (425)
T 3ecd_A          172 KPSLIIA-GFSAYPR-----KLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHAN--P----VE--HAHVVTSTTHKTL  237 (425)
T ss_dssp             CCSEEEE-ECSCCCS-----CCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCC--G----GG--TCSEEEEESSGGG
T ss_pred             CCcEEEE-ccccCCC-----cCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccC--c----hh--cCcEEEecCCccc
Confidence            4677777 6789975     346789999999999999999995 33333321100  0    11  1238899999987


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhhhhhccc-CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMY-SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                        +|.|+||+  +++++++.+.+..    ...... .+++...+.++..++...     ..+..++.+++++++++++.+
T Consensus       238 --~g~~~g~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~~  304 (425)
T 3ecd_A          238 --RGPRGGFV--LTNDEEIAKKINS----AVFPGLQGGPLMHVIAGKAVAFGEA-----LTDDFKTYIDRVLANAQALGD  304 (425)
T ss_dssp             --CCCSCEEE--EESCHHHHHHHHH----HHC-----CCCHHHHHHHHHHHHHH-----TSHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCcEEE--EeCCHHHHHHHHh----hhCccccCCccHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHH
Confidence              67899999  6776655444333    222211 133443333333333211     013456778888999999999


Q ss_pred             HHHhcCCCCCcccccC-CceeEEecC-----CCHHHHHHhHhhccEEEc----CC--------C--eEEecC-----CCC
Q 015435          335 ALSARGTPGDWSHIIK-QIGMFTFTG-----LNSEQVAFMTKEYHIYMT----SD--------G--RISMAG-----LSS  389 (407)
Q Consensus       335 ~l~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~l~~~gi~~~----~g--------g--Ris~~~-----~~~  389 (407)
                      .|++.+    +.+..+ ..+++.|+.     .+.+.+.+.|+++||.+.    |+        +  |+++..     .++
T Consensus       305 ~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~  380 (425)
T 3ecd_A          305 VLKAGG----VDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGA  380 (425)
T ss_dssp             HHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCH
T ss_pred             HHHhCC----CeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCH
Confidence            999877    555543 345555553     356778888888999998    54        1  666332     246


Q ss_pred             CChhHHHHHHHHHHHh
Q 015435          390 KTVPHLTDAIHAAVTR  405 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~  405 (407)
                      +++++++++|++++++
T Consensus       381 e~i~~~~~~l~~~l~~  396 (425)
T 3ecd_A          381 AEFREVGRLILEVFEA  396 (425)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8999999999998865

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.91  E-value=1.6e-23  Score=199.99  Aligned_cols=321  Identities=16%  Similarity=0.182  Sum_probs=200.7

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc------CCCCCCcHHHH----HHHHHHHhCCCCCCCCCCc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE------YLPIVGLVDFN----KLSAKLILGADSPAIKDNR  100 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------y~~~~g~~~l~----~~~a~~~~~~~~~~~~~~~  100 (407)
                      ..+++++.+.       |.++.+.+++.+.+.  .....+      |.......+++    +.+++++ +..     ++.
T Consensus        24 ~~~~~~~~~~-------~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~-g~~-----~~~   88 (405)
T 2vi8_A           24 AKIELIASEN-------FVSRAVMEAQGSVLT--NKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF-GAE-----HAN   88 (405)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGG--GCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TCS-----EEE
T ss_pred             cceeeccCcc-------cCCHHHHHHHHHHhh--cccccCCCCccccccchHHHHHHHHHHHHHHHHh-CCC-----ceE
Confidence            4677775432       446666666655553  111111      21112233444    5788877 431     133


Q ss_pred             eEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH-H--HhhcCc--eeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435          101 VTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK-V--FTLAGL--SVKTYRYYDPATRGLNFQGLLEDLRAA  175 (407)
Q Consensus       101 i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~-~--~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~i~~~  175 (407)
                      +++  ++| ++++.+++..+  +.+||+|+++.|+|..+.. .  +...|.  +++.+++ ++.++.+|++++++.+.+.
T Consensus        89 i~~--~sG-t~a~~~a~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~~  162 (405)
T 2vi8_A           89 VQP--HSG-AQANMAVYFTV--LEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGV-DPETHVIDYDDVREKARLH  162 (405)
T ss_dssp             CCC--SSH-HHHHHHHHHHH--CCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECB-CTTTCSBCHHHHHHHHHHH
T ss_pred             EEe--cCc-HHHHHHHHHHh--cCCCCEEEEecccccchhcccchhhhccceeEEEeccc-ccccCCcCHHHHHHHHHhc
Confidence            334  554 99999985443  7799999999999988754 2  224444  6777766 2356789999999999731


Q ss_pred             CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccC-CCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435          176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS-GSLDADAQSVRMFVADGGECLVAQSYAKN  254 (407)
Q Consensus       176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
                       +++++++  +|+|. |...   ++++|+++|++||+++|+|++|..... .+.  ....   + .  ...++++|+||.
T Consensus       163 -~~~~v~~--~~~~~-~~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~---~-~--~~di~~~s~sK~  227 (405)
T 2vi8_A          163 -RPKLIVA--AAAAY-PRII---DFAKFREIADEVGAYLMVDMAHIAGLVAAGL--HPNP---V-P--YAHFVTTTTHKT  227 (405)
T ss_dssp             -CCSEEEE--CCSSC-CSCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCS---T-T--TCSEEEEESSST
T ss_pred             -CCeEEEE--eCCCC-CccC---CHHHHHHHHHHcCCEEEEEccccccccccCc--CCCc---c-c--cCCEEEEecccc
Confidence             4566665  34443 3433   488999999999999999999873221 111  0111   1 1  233889999999


Q ss_pred             cc-ccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCC-ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 015435          255 MG-LYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSP-PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQL  332 (407)
Q Consensus       255 ~~-~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (407)
                      ++ ++|   ||+  +++ +++.+.    +......+..++ +...+.++..+++...     ...+++.+++++++++++
T Consensus       228 ~~g~~g---G~~--~~~-~~~~~~----l~~~~~~~~~~~~~~~~~aa~~~al~~~~-----~~~~~~~~~~~~~~~~~l  292 (405)
T 2vi8_A          228 LRGPRG---GMI--LCQ-EQFAKQ----IDKAIFPGIQGGPLMHVIAAKAVAFGEAL-----QDDFKAYAKRVVDNAKRL  292 (405)
T ss_dssp             TCCCSC---EEE--EEC-HHHHHH----HHHHHTTTTCSSCCHHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCC---eEE--EEc-HHHHHH----HHhhhcccccCCCCHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHH
Confidence            97 555   888  565 554444    333322232333 3333444344444211     134677888999999999


Q ss_pred             HHHHHhcCCCCCcccccC-CceeEEecCC-----CHHHHHHhHhhccEEEcCC------------C--eEEecC-----C
Q 015435          333 FDALSARGTPGDWSHIIK-QIGMFTFTGL-----NSEQVAFMTKEYHIYMTSD------------G--RISMAG-----L  387 (407)
Q Consensus       333 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~g------------g--Ris~~~-----~  387 (407)
                      .+.|++.|    +.+..+ ..+++.|+.+     +.+.+.+.|.++||.+.+|            +  ||+++.     +
T Consensus       293 ~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~  368 (405)
T 2vi8_A          293 ASALQNEG----FTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGF  368 (405)
T ss_dssp             HHHHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTC
T ss_pred             HHHHHhCC----CeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCC
Confidence            99999886    565544 3456666643     4566666677799998763            2  999873     5


Q ss_pred             CCCChhHHHHHHHHHHHhh
Q 015435          388 SSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       388 ~~e~i~~~~~~l~~~l~~~  406 (407)
                      +++++++++++|++++++.
T Consensus       369 ~~~~i~~~~~~l~~~~~~~  387 (405)
T 2vi8_A          369 GLEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             CHHHHHHHHHHHHHHHTCT
T ss_pred             CHHHHHHHHHHHHHHHhcc
Confidence            7899999999999988653

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.91  E-value=2e-23  Score=202.18  Aligned_cols=305  Identities=10%  Similarity=0.015  Sum_probs=196.9

Q ss_pred             ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCC-----ceEEeecCCcccHHHHHHHHHHh-h-----cCC-----CeEEec
Q 015435           69 KEYLPIVGLVDFNKLSAKLILGADSPAIKDN-----RVTTVQCLSGTGSLRVGAEFLAR-H-----YHQ-----LTIYIP  132 (407)
Q Consensus        69 ~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~-----~i~~~~t~g~t~a~~~~~~~~~~-~-----~~g-----d~Vi~~  132 (407)
                      .+|....+..++++++++++....+..  .+     .+++  |+|||+++.+++..+.. .     .+|     ++|+++
T Consensus        71 ~~~~~~~~~~~l~~~~~~~la~l~g~~--~~~~~~~~~~~--t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~  146 (452)
T 2dgk_A           71 IDKEEYPQSAAIDLRCVNMVADLWHAP--APKNGQAVGTN--TIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG  146 (452)
T ss_dssp             TCTTTCHHHHHHHHHHHHHHHHHTTCC--CCTTSCCEEEE--ESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEES
T ss_pred             CChhhChhHHHHHHHHHHHHHHHhCCC--cccccCCceEE--eCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEC
Confidence            445555676677777666553332322  23     4888  99999999988533321 0     144     589999


Q ss_pred             CCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc--
Q 015435          133 QPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK--  210 (407)
Q Consensus       133 ~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~--  210 (407)
                      + +|..+...++..|++++.+|++ +.++.+|+++++++++  +++++|++ ++|+||||.+.   ++++|+++|+++  
T Consensus       147 ~-~h~~~~~~~~~~G~~v~~v~~~-~~~~~~d~~~l~~~i~--~~t~~v~~-~~~~n~tG~~~---~l~~I~~ia~~~~~  218 (452)
T 2dgk_A          147 P-VQICWHKFARYWDVELREIPMR-PGQLFMDPKRMIEACD--ENTIGVVP-TFGVTYTGNYE---FPQPLHDALDKFQA  218 (452)
T ss_dssp             S-CCHHHHHHHHHTTCEEEECCCB-TTBCSCCHHHHHHHCC--TTEEEEEC-BBSCTTTCBBC---CHHHHHHHHHHHHH
T ss_pred             C-CcHHHHHHHHHcCceEEEEecC-CCCCeECHHHHHHHHh--hCCEEEEE-EcCCcCCcccC---CHHHHHHHHHHHhh
Confidence            9 9999999999999999999984 3357899999999997  44555555 89999999975   578888889995  


Q ss_pred             ----CceeeeccccccccC---CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH-HHHHHHH
Q 015435          211 ----GLLPFFDSAYQGFAS---GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA-SRVESQL  282 (407)
Q Consensus       211 ----~~~li~D~~y~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~-~~~~~~~  282 (407)
                          |+++++|++|..+..   .+. . .+.   + ....-.++..|++| ++++|.++|++  ++++++.. +.+.. .
T Consensus       219 ~~~~~~~l~vD~a~~~~~~~~~~~~-~-~~~---~-~~~~~d~~~~~~hK-~~~~~~~~G~~--~~~~~~~~~~~~~~-~  288 (452)
T 2dgk_A          219 DTGIDIDMHIDAASGGFLAPFVAPD-I-VWD---F-RLPRVKSISASGHK-FGLAPLGCGWV--IWRDEEALPQELVF-N  288 (452)
T ss_dssp             HHCCCCCEEEECTTGGGTHHHHCTT-C-CCS---T-TSTTEEEEEEETTT-TTCCCSSCEEE--EESSGGGSCGGGCE-E
T ss_pred             ccCCCCcEEEEcccHHHHHHhhCcc-c-hhh---c-CCCCCcEEEECccc-ccCCCCCeEEE--EEcCHHHHHHHhcc-C
Confidence                999999999987652   110 0 000   0 11234567788899 56688999999  67655421 21100 0


Q ss_pred             hhhhh----cccC--CC---ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc----
Q 015435          283 KLVIR----PMYS--SP---PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII----  349 (407)
Q Consensus       283 ~~~~~----~~~~--~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----  349 (407)
                      ..+..    ....  +.   ..+++.++...+.        .+.+++..++..++++++.+.|++.+.   +++..    
T Consensus       289 ~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg--------~~g~~~~~~~~~~~a~~l~~~L~~~~~---~~~~~~~~~  357 (452)
T 2dgk_A          289 VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG--------REGYTKVQNASYQVAAYLADEIAKLGP---YEFICTGRP  357 (452)
T ss_dssp             ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHTTSS---EEEEEECCT
T ss_pred             ccccCCCCCCcccCCCChhHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHhCCC---eEEecCCCC
Confidence            00100    0000  11   1223333333332        134667788899999999999998753   55543    


Q ss_pred             -CCceeEEec--C-----CCHHHHHHhHhhccEEEc----CC---C----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          350 -KQIGMFTFT--G-----LNSEQVAFMTKEYHIYMT----SD---G----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       350 -~~~~~~~~~--~-----~~~~~~~~~l~~~gi~~~----~g---g----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                       +..+++.|.  +     ++.+.+...|.++||.+.    |.   +    ||+++. .++++++++++.|+++++++
T Consensus       358 ~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~  434 (452)
T 2dgk_A          358 DEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYL  434 (452)
T ss_dssp             TTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence             344555442  2     243555555556788432    32   2    899875 46789999999999987653

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.91  E-value=7.1e-23  Score=193.75  Aligned_cols=292  Identities=11%  Similarity=0.079  Sum_probs=193.1

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH--HHHhhcC--ceeeE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP--KVFTLAG--LSVKT  152 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~--~~~~~~G--~~~~~  152 (407)
                      ..++++.+++++ +..      +.+++  |+|||+++++++   ..+.+||+|++++++|.++.  ..++..|  .+++.
T Consensus        37 ~~~~~~~l~~~~-~~~------~~v~~--~~sgt~a~~~~~---~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~  104 (379)
T 3ke3_A           37 MNDLLSNLKTVY-NAE------AAVII--PGSGTYGMEAVA---RQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTV  104 (379)
T ss_dssp             HHHHHHHHHHHH-TCS------EEEEE--ESCHHHHHHHHH---HHHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEE
T ss_pred             HHHHHHHHHHHh-CCC------CEEEE--cCChhHHHHHHH---HhCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEE
Confidence            446677777776 431      57888  999999999984   44679999999999887653  3444555  47777


Q ss_pred             EEeecC------CC-CCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435          153 YRYYDP------AT-RGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS  225 (407)
Q Consensus       153 v~~~~~------~~-~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~  225 (407)
                      ++....      .. ..+|++++++.+.+ ++++++++ ++++||||.+.+.+++++|+++|++||+++|+|++++ .. 
T Consensus       105 ~~~~~~g~~~~~~~~~~~d~~~l~~~i~~-~~~~~v~~-~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~-  180 (379)
T 3ke3_A          105 LTAERTEDTEAPKPFAPVDIETAVAKIKE-DKSAIVYA-PHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GC-  180 (379)
T ss_dssp             EECEESSCCSSCCCEECCCHHHHHHHHHH-HTCSEEEE-ESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TT-
T ss_pred             EeccccccccccCCCCCCCHHHHHHHHhh-cCCcEEEE-EeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CC-
Confidence            776320      01 25799999999953 24667666 7889999999999999999999999999999999975 21 


Q ss_pred             CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH-h-----------------hhhh
Q 015435          226 GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL-K-----------------LVIR  287 (407)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~-~-----------------~~~~  287 (407)
                        .+.   .+..    .+..+++.|++|.++. +.++|++  +++ +++.+.+.... .                 ...+
T Consensus       181 --~~~---~~~~----~~~d~~~~s~~K~l~~-~~g~g~~--~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~  247 (379)
T 3ke3_A          181 --VWL---DMKE----LGIDVLISAPQKGWSS-TPCAGLV--MLS-AAAIKKVESTESNCFSLDLKQWLTIMRAYENGGH  247 (379)
T ss_dssp             --CCC---CHHH----HTCSEEEECTTTTTCS-CCCEEEE--EEC-HHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSC
T ss_pred             --ccc---cccc----cCCCEEEecchhhcCC-CCceEEE--EEC-HHHHHhhhcCCCCceeecHHHHHHHHHhhhccCC
Confidence              111   1111    1345788899998863 3457887  344 44444332200 0                 0000


Q ss_pred             cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC---ceeEE-ecCCCHH
Q 015435          288 PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ---IGMFT-FTGLNSE  363 (407)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~-~~~~~~~  363 (407)
                      .+..+++...+.++..+++...     ...+++.+++++++++++.+.|+++|    +.+..+.   .+... +..-+.+
T Consensus       248 ~~~~t~~~~~~~a~~aal~~~~-----~~g~~~~~~~~~~l~~~l~~~l~~~g----~~~~~~~~~~~~~i~~~~~~~~~  318 (379)
T 3ke3_A          248 AYHATMPTDSLRQFRDAILEAK-----EIGFDILRDAQWELGNRVRKVLTDKG----IESVAAEGFEAPGVVVSYTERDD  318 (379)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSBCTTCBCSSEEEEECSCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH-----HhcHHHHHHHHHHHHHHHHHHHHHcC----CEecCCccccCceEEEEccCCcc
Confidence            1122566666666666654221     12257788889999999999999887    4443322   22222 2222333


Q ss_pred             HH-HHhHhhccEEEcCC----------C---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          364 QV-AFMTKEYHIYMTSD----------G---RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       364 ~~-~~~l~~~gi~~~~g----------g---Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .. ...|.++||.+.+|          +   ||++.. .+++|+++++++|+++++++
T Consensus       319 ~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~  376 (379)
T 3ke3_A          319 MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV  376 (379)
T ss_dssp             HHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence            32 45567789988765          3   888753 47899999999999998765

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.90  E-value=1.2e-23  Score=203.34  Aligned_cols=321  Identities=18%  Similarity=0.189  Sum_probs=199.0

Q ss_pred             CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCC---CCc------HHHH-HHHHHHHhCCCCCCCCCCce
Q 015435           32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPI---VGL------VDFN-KLSAKLILGADSPAIKDNRV  101 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~---~g~------~~l~-~~~a~~~~~~~~~~~~~~~i  101 (407)
                      +.|+|..+.    +  +.++.+++++.+.+.  .....+|+..   .|.      .++. +.+++++ +..      ...
T Consensus        46 ~~i~l~~~~----~--~~~~~v~~a~~~~~~--~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~-g~~------~~~  110 (447)
T 3h7f_A           46 DTLEMIASE----N--FVPRAVLQAQGSVLT--NKYAEGLPGRRYYGGCEHVDVVENLARDRAKALF-GAE------FAN  110 (447)
T ss_dssp             HSEECCTTC----C--CCCHHHHHHHTSGGG--GCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TCS------EEE
T ss_pred             CceeEecCC----C--CCCHHHHHHHHHHhc--CCccccCCcccccCccHHHHHHHHHHHHHHHHHc-CCC------ceE
Confidence            667775432    2  446666666655553  1111223221   232      2233 5566655 431      233


Q ss_pred             EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhh--cCceeeEEEeecCCCCCcChhhHHHHHHcCC
Q 015435          102 TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTL--AGLSVKTYRYYDPATRGLNFQGLLEDLRAAP  176 (407)
Q Consensus       102 ~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~--~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~  176 (407)
                      ++  ++||++++..++  ...+.+||+|++++|+|..+..   ....  .+..++.+++ ++.++.+|++++++.+.+ .
T Consensus       111 v~--~~sGs~a~~~a~--~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~-~  184 (447)
T 3h7f_A          111 VQ--PHSGAQANAAVL--HALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGV-DPATHLIDMDAVRATALE-F  184 (447)
T ss_dssp             CC--CSSHHHHHHHHH--HHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECC-CTTTCSCCHHHHHHHHHH-H
T ss_pred             EE--eCCHHHHHHHHH--HHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCc-CcccCCcCHHHHHHHHHh-c
Confidence            33  777889998884  4457899999999999887322   1122  3445556665 244567999999999863 2


Q ss_pred             CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-ccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      +++++++ ++|+||++.     ++++|+++|++||++||+|++| .++.+.+.....     + .  ...+++.|+||.+
T Consensus       185 ~~~~i~~-~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~-----~-~--~~di~~~s~sK~l  250 (447)
T 3h7f_A          185 RPKVIIA-GWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP-----V-P--HADVVSTTVHKTL  250 (447)
T ss_dssp             CCSEEEE-ECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS-----T-T--TCSEEEEESSGGG
T ss_pred             CCeEEEE-cCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC-----C-C--CCcEEEecCCcCC
Confidence            3556555 789999976     7899999999999999999996 434332211110     0 1  2247799999987


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhhhhhccc-CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMY-SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                      +  |+|.||+  +++ +++.+.+..    ...... .+++...+.++..++....     ....++.++++.++++++.+
T Consensus       251 ~--G~~gG~i--~~~-~~~~~~l~~----~~~~~~~~~~~~~~~~a~~~a~~~~~-----~~~~~~~~~~~~~~~~~l~~  316 (447)
T 3h7f_A          251 G--GGRSGLI--VGK-QQYAKAINS----AVFPGQQGGPLMHVIAGKAVALKIAA-----TPEFADRQRRTLSGARIIAD  316 (447)
T ss_dssp             C--CCSCEEE--EEC-GGGHHHHHH----HHTTTTCSSCCHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHHHH
T ss_pred             C--CCCeEEE--EEC-HHHHHHHhh----hcCCcccCCccHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHHH
Confidence            4  8899998  454 555554433    222222 2333333443333332111     12356777888899999999


Q ss_pred             HHHhc-----CCCCCccccc-CCceeEEec-----CCCHHHHHHhHhhccEEEc----CC---------C-eEEecC---
Q 015435          335 ALSAR-----GTPGDWSHII-KQIGMFTFT-----GLNSEQVAFMTKEYHIYMT----SD---------G-RISMAG---  386 (407)
Q Consensus       335 ~l~~~-----~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~----~g---------g-Ris~~~---  386 (407)
                      .|++.     |    +.... +..+++.|+     +++.+.+..+|+++||.+.    |+         + ||+...   
T Consensus       317 ~L~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~  392 (447)
T 3h7f_A          317 RLMAPDVAKAG----VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALAT  392 (447)
T ss_dssp             HHTSHHHHHTT----CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHH
T ss_pred             HHHhccccCCC----eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhh
Confidence            99877     6    55443 234445554     3367788888888899988    43         1 876532   


Q ss_pred             --CCCCChhHHHHHHHHHHHh
Q 015435          387 --LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       387 --~~~e~i~~~~~~l~~~l~~  405 (407)
                        +++++++++++.|.+++++
T Consensus       393 ~~~~~eei~~~~~~l~~~l~~  413 (447)
T 3h7f_A          393 RGFGDTEFTEVADIIATALAT  413 (447)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHHhc
Confidence              4679999999999998864

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.90  E-value=1.8e-22  Score=190.44  Aligned_cols=311  Identities=14%  Similarity=0.086  Sum_probs=196.3

Q ss_pred             cccchhHHHHHHHHhccccccccCCC-CCCcHHHHHHH-HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hc
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLP-IVGLVDFNKLS-AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HY  124 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~-~~g~~~l~~~~-a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~  124 (407)
                      +.++.+++++.+.+.  ...   |.+ .....++++++ ++++ +.      .+++++  ++|||+++.+++  ... +.
T Consensus        13 ~~~~~i~~a~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~-g~------~~~~v~--~~sgt~al~~al--~~l~~~   76 (377)
T 3ju7_A           13 VPVIEYLDELKEIDA--SHI---YTNYGPINQRFEQTIMSGFF-QN------RGAVTT--VANATLGLMAAI--QLKKRK   76 (377)
T ss_dssp             CCGGGGHHHHHHHHH--HTC---CSSSCHHHHHHHHHHHHHTS-TT------CSEEEE--ESCHHHHHHHHH--HHHSCT
T ss_pred             CCcHHHHHHHHHHHH--cCC---cccCCHHHHHHHHHHHHHHh-CC------CCeEEE--eCCHHHHHHHHH--HHcCCC
Confidence            446666777777765  222   332 34578999999 9988 41      167888  999999999884  444 67


Q ss_pred             CCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC--CcEEEEecCCCCCCCCCCCHHHHHH
Q 015435          125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS--GAIVLLHACAHNPTGVDPTLEQWEQ  202 (407)
Q Consensus       125 ~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~--~~~v~i~~~p~NPtG~~~~~~~l~~  202 (407)
                      +||+|+++.|+|..+...+...|++++.++++ +.++.+|++++++++.. ++  +++++    |+||||...+   +++
T Consensus        77 ~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~-~~~~tk~v~----~~~~~G~~~~---~~~  147 (377)
T 3ju7_A           77 KGKYALMPSFTFPATPLAAIWCGLEPYFIDIS-IDDWYMDKTVLWDKIEE-LKEEVAIVV----PYATFGSWMN---LEE  147 (377)
T ss_dssp             TCCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHHHHHHH-HGGGEEEEC----CBCGGGBCCC---CHH
T ss_pred             CcCEEEECCCCcHHHHHHHHHcCCEEEEEecC-CccCCcCHHHHHHHHhc-CCCCceEEE----EECCCCCccC---HHH
Confidence            99999999999999999999999999999983 45688999999998831 23  45443    5789999765   677


Q ss_pred             HHHHHHHcCceeeeccccccccCCCCCchhHHHHHH-HHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHH
Q 015435          203 IRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF-VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQ  281 (407)
Q Consensus       203 i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~  281 (407)
                      |.++|+ ||+++|+|++++.......  .  .   + ....+-.++..+.+|.++. | +.|++  +++++++.+++...
T Consensus       148 i~~la~-~~~~vi~D~a~a~g~~~~~--~--~---~g~~~~d~~~~S~~~~K~l~~-g-~gG~~--~~~~~~l~~~~~~~  215 (377)
T 3ju7_A          148 YEELEK-KGVPVVVDAAPGFGLMNGG--M--H---YGQDFSGMIIYSFHATKPFGI-G-EGGLI--YSKNEEDIQRIKRM  215 (377)
T ss_dssp             HHHHHH-TTCCBEEECTTCTTCEETT--E--E---TTTTCSSEEEEECBTTSSSCC-B-SCEEE--EESCHHHHHHHHHH
T ss_pred             HHHHHh-cCCEEEEECCCccCCeECC--E--e---ccCCCCcEEEEECCCCCcCCC-C-CcEEE--EECCHHHHHHHHHH
Confidence            777799 9999999999864332100  0  0   1 0112333444445799984 5 56777  68887766665442


Q ss_pred             Hhhhhh--------cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcccccCCc
Q 015435          282 LKLVIR--------PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP-GDWSHIIKQI  352 (407)
Q Consensus       282 ~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~  352 (407)
                      ......        ......+.+.+..+...++          .++...++.+++++++.+.|++.+.- ..+.......
T Consensus       216 ~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~----------~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  285 (377)
T 3ju7_A          216 GNFGFDTNRECTMMGFNCKMSEYAAAIGIATMK----------KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEA  285 (377)
T ss_dssp             TBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHH----------THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSC
T ss_pred             HhcCCCCCCceeeccccCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCc
Confidence            221110        0112233333333333332          24455566667777888888776520 0011111111


Q ss_pred             e---eEEec-C--CCHHHHHHhHhhccEEEcCC----------------C-------------eEEecC-CCCCChhHHH
Q 015435          353 G---MFTFT-G--LNSEQVAFMTKEYHIYMTSD----------------G-------------RISMAG-LSSKTVPHLT  396 (407)
Q Consensus       353 ~---~~~~~-~--~~~~~~~~~l~~~gi~~~~g----------------g-------------Ris~~~-~~~e~i~~~~  396 (407)
                      .   ++.+. +  .+.+.+...|+++||.+..+                +             |+.+.. ++++|+++++
T Consensus       286 ~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~  365 (377)
T 3ju7_A          286 VIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIV  365 (377)
T ss_dssp             BCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred             ceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHH
Confidence            1   11211 1  13777888888899987542                0             555543 6789999999


Q ss_pred             HHHHHHHHh
Q 015435          397 DAIHAAVTR  405 (407)
Q Consensus       397 ~~l~~~l~~  405 (407)
                      +.|++++..
T Consensus       366 ~~l~~~~~~  374 (377)
T 3ju7_A          366 ICLGQKVVS  374 (377)
T ss_dssp             HHHTC----
T ss_pred             HHHHHHHhc
Confidence            999887753

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.90  E-value=7.8e-22  Score=187.31  Aligned_cols=215  Identities=16%  Similarity=0.137  Sum_probs=155.6

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-----hcCc
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-----LAGL  148 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-----~~G~  148 (407)
                      .....++++.++++. +.       ++.++  ++||++|+.++   +..+.+||+|++++|+|.+....+.     ..|.
T Consensus        66 ~p~~~~l~~~la~l~-g~-------~~~~~--~~sG~~Ai~~~---~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~  132 (400)
T 3nmy_A           66 NPTRFAYERCVAALE-GG-------TRAFA--FASGMAATSTV---MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGL  132 (400)
T ss_dssp             CHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCC
T ss_pred             CHHHHHHHHHHHHHh-CC-------CCEEE--ecCHHHHHHHH---HHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCe
Confidence            345678888999887 43       46777  88889999875   4567899999999999986655543     4699


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++.       .|++++++++.  ++++++++ .+|+||||.+.+   +++|+++|++||+++|+|++|....... 
T Consensus       133 ~~~~v~~-------~d~~~l~~~i~--~~~~~v~~-e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~-  198 (400)
T 3nmy_A          133 DFSFVDL-------TDPAAFKAAIR--ADTKMVWI-ETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR-  198 (400)
T ss_dssp             EEEEECT-------TSHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC-
T ss_pred             EEEEECC-------CCHHHHHHHhc--cCCCEEEE-ECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            9988866       28899999987  56677776 899999999985   8888889999999999999986433211 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccCCCcce-eEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGA-LSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD  307 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (407)
                                .......+++.|+||.++.+|.++|+ ++ ++.++++.+.+.    ..........+...+..+...++.
T Consensus       199 ----------~~~~g~div~~S~sK~l~g~g~~~gG~~v-v~~~~~~~~~l~----~~~~~~g~~~~~~~a~~~l~~l~~  263 (400)
T 3nmy_A          199 ----------PLSLGADLVVHSATKYLNGHSDMVGGIAV-VGDNAELAEQMA----FLQNSIGGVQGPFDSFLALRGLKT  263 (400)
T ss_dssp             ----------GGGGTCSEEEEETTTTTTCSSSCCCEEEE-ECSCHHHHHHHH----HHHHHHCCBCCHHHHHHHHHHHTT
T ss_pred             ----------hhhcCCcEEEecCccccCCCCCcceeEEE-EeCCHHHHHHHH----HHHHhcCCCCCHHHHHHHHHhHhH
Confidence                      01123568999999999988888877 32 566665555443    333333345566666666555543


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          308 STMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                                +....++..++.+.+.+.|++.+
T Consensus       264 ----------l~~r~~~~~~~a~~l~~~L~~~p  286 (400)
T 3nmy_A          264 ----------LPLRMRAHCENALALAQWLETHP  286 (400)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHcCC
Confidence                      23445666778888888887654

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.90  E-value=2.2e-23  Score=202.51  Aligned_cols=344  Identities=9%  Similarity=0.008  Sum_probs=212.7

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc-cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ-SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ..++++|||..|.+..+.| ..++.+++++.+++.... .....|+. ....++++++++.+.....  ...+++++  +
T Consensus        60 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f--~  133 (472)
T 1ohv_A           60 VDGNRMLDLYSQISSIPIG-YSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLIT--M  133 (472)
T ss_dssp             TTSCEEEESSHHHHTCSSC-BTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEE--E
T ss_pred             CCCCEEEECCCCHhhcccC-CCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEE--e
Confidence            4578999999998755567 567778877776653100 11112322 3356899999886633221  13478999  9


Q ss_pred             CCcccHHHHHHHHHHhh-----c------------------CC---CeEEecCCCCCChHHHHh-hcCcee---------
Q 015435          107 LSGTGSLRVGAEFLARH-----Y------------------HQ---LTIYIPQPTWGNHPKVFT-LAGLSV---------  150 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~-----~------------------~g---d~Vi~~~p~y~~~~~~~~-~~G~~~---------  150 (407)
                      +||++|++.+++++...     .                  +|   ++|++.+++|+++..... ..|...         
T Consensus       134 ~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~  213 (472)
T 1ohv_A          134 ACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSF  213 (472)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCC
T ss_pred             CCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCC
Confidence            99999999998776422     1                  35   899999999998766553 323211         


Q ss_pred             --eEEEeecCC-C------C-----CcChhhHHHHHHcC----CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcC
Q 015435          151 --KTYRYYDPA-T------R-----GLNFQGLLEDLRAA----PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKG  211 (407)
Q Consensus       151 --~~v~~~~~~-~------~-----~~d~~~l~~~i~~~----~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~  211 (407)
                        ..++..... .      +     ..|+++|++.+.+.    ++++++++ .+.+|+||. ..+++.+++|+++|++||
T Consensus       214 ~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~viv-e~v~~~~G~~~~~~~~l~~l~~l~~~~g  292 (472)
T 1ohv_A          214 DWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIV-EPIQSEGGDNHASDDFFRKLRDISRKHG  292 (472)
T ss_dssp             CCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE-CSSBCTTTCBCCCHHHHHHHHHHHHHTT
T ss_pred             CCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEE-cCCcCCCCCCCCCHHHHHHHHHHHHHhC
Confidence              112221000 0      0     12678888888731    14555555 556788997 578999999999999999


Q ss_pred             ceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccC
Q 015435          212 LLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYS  291 (407)
Q Consensus       212 ~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~  291 (407)
                      ++||+||+|.+++..+.   ......+ ... ...-+.||||.+ +.|   |++  +  ++++    . .........+.
T Consensus       293 ~lli~DEv~~g~g~~g~---~~~~~~~-gv~-~~~Di~t~sK~~-l~G---G~~--~--~~~~----~-~~~~~~~~~T~  354 (472)
T 1ohv_A          293 CAFLVDEVQTGGGSTGK---FWAHEHW-GLD-DPADVMTFSKKM-MTG---GFF--H--KEEF----R-PNAPYRIFNTW  354 (472)
T ss_dssp             CEEEEECTTTTTTTTSS---SSGGGGG-CCS-SCCSEEEECGGG-SSE---EEE--E--CGGG----S-CSSSSSSCCSS
T ss_pred             CEEEEeCcccCCCCCCC---chhcccc-CCC-CCCCEEEEcccc-ccC---Ccc--C--chhh----c-ccccccccCcc
Confidence            99999999988776542   1111111 100 002234899985 334   666  3  3332    1 12222223444


Q ss_pred             CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccccCCceeEEecCCC----H-HH
Q 015435          292 SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFTGLN----S-EQ  364 (407)
Q Consensus       292 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~----~-~~  364 (407)
                      +.+++++.++.++++...      +  +...++++++++++.+.|+++  +.+..+....+.+.++.+ .+.    . ++
T Consensus       355 ~~~~~~~aaa~aal~~~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~-~~~~~~~~~~~  425 (472)
T 1ohv_A          355 LGDPSKNLLLAEVINIIK------R--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSF-DTPDESIRNKL  425 (472)
T ss_dssp             SSCHHHHHHHHHHHHHHH------H--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEE-ECSSHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHH------h--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEE-EeCChhHHHHH
Confidence            678888888887775321      1  235577777888888877765  221112223445555443 442    2 23


Q ss_pred             HHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          365 VAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       365 ~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ...++ ++||.+.++|    ||+++. .+++++++++++|+++++++
T Consensus       426 ~~~l~-~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          426 ISIAR-NKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             HHHHH-HTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHH-HCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            44555 4899999864    786553 48899999999999998765

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.90  E-value=3.5e-22  Score=191.05  Aligned_cols=278  Identities=15%  Similarity=0.087  Sum_probs=183.2

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCc
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGL  148 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~  148 (407)
                      +.....++++.+++++ +.       +..++  +++|++|+.+++  ...+.+||+|++++|+|.++..    .++..|.
T Consensus        80 ~~p~~~~le~~lA~l~-g~-------~~~v~--~~sG~~Ai~~al--~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~  147 (430)
T 3ri6_A           80 SNPTVEDLEQRLKNLT-GA-------LGVLA--LGSGMAAISTAI--LTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGI  147 (430)
T ss_dssp             CCHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHH-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence            3456788999999988 43       44666  778889999884  4458899999999999998877    5668899


Q ss_pred             eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435          149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL  228 (407)
Q Consensus       149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~  228 (407)
                      +++.++..       |++++++++.  ++++++++ ++|+||||.+.+   +++|+++|+++|+++|+|++|....... 
T Consensus       148 ~~~~v~~~-------d~~~l~~ai~--~~t~~v~~-e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~-  213 (430)
T 3ri6_A          148 EVRFVDVM-------DSLAVEHACD--ETTKLLFL-ETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLE-  213 (430)
T ss_dssp             EEEEECTT-------CHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCC-
T ss_pred             EEEEeCCC-------CHHHHHHhhC--CCCeEEEE-ECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            99999761       8899999987  56777776 899999999886   7788888999999999999997554321 


Q ss_pred             CchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee-cChhhH-----H---------HHHHHHhh-hhhcccCC
Q 015435          229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC-KTEDVA-----S---------RVESQLKL-VIRPMYSS  292 (407)
Q Consensus       229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~-~~~~~~-----~---------~~~~~~~~-~~~~~~~~  292 (407)
                         .       ......+++.|+||.++.+|..+|.++ ++ .+....     .         .+...... ........
T Consensus       214 ---~-------~~~g~div~~S~sK~l~g~g~~~gG~v-v~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~  282 (430)
T 3ri6_A          214 ---A-------KRLGVDIEVLSSTKFISGGGTSVGGVL-IDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPS  282 (430)
T ss_dssp             ---G-------GGGTCSEEEEECCCEEETTEEECCEEE-EECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCC
T ss_pred             ---h-------HHcCCEEEEECCcccccCCCCceEEEE-EECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCC
Confidence               1       112346889999999997777777763 32 332210     0         01111111 11112223


Q ss_pred             CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-cccC----------------CceeE
Q 015435          293 PPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-HIIK----------------QIGMF  355 (407)
Q Consensus       293 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~----------------~~~~~  355 (407)
                      .+......+...+          +.+....++..++...+.+.|++.+.   +. +.-|                .||+.
T Consensus       283 ~~~~~a~l~l~~l----------~~l~~r~~~~~~na~~la~~L~~~p~---v~~V~~P~l~~~p~~~~~~~~~g~Gg~~  349 (430)
T 3ri6_A          283 LSPHNAYLQSLGL----------ETMALRIERSCQNAQELAHWLLSIPQ---VKCVNHPSLPDSPFYAIAKRQFRYAGSI  349 (430)
T ss_dssp             CCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHTTCTT---CEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred             CCHHHHHHHHhhh----------hhHHHHHHHHHHHHHHHHHHHhCCCC---ccEEECCCCCCCccHHHHHHhCCCCceE
Confidence            3333333222222          33445556777888899999987642   22 2222                16645


Q ss_pred             EecCC-CHHHHHHhHhh---ccEEEcCCC-------------------------------eEEecCCCCCChhHHHHHHH
Q 015435          356 TFTGL-NSEQVAFMTKE---YHIYMTSDG-------------------------------RISMAGLSSKTVPHLTDAIH  400 (407)
Q Consensus       356 ~~~~~-~~~~~~~~l~~---~gi~~~~gg-------------------------------Ris~~~~~~e~i~~~~~~l~  400 (407)
                      .++.+ +.+...+++++   .++.+..||                               |||++   .|+.+.+++.|+
T Consensus       350 lsf~l~~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG---~E~~~dl~~dl~  426 (430)
T 3ri6_A          350 LTFELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG---IEEIEDLKEDIL  426 (430)
T ss_dssp             EEEECSSHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC---SSCHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHH
Confidence            55555 44444444444   344444432                               66665   388999999999


Q ss_pred             HHH
Q 015435          401 AAV  403 (407)
Q Consensus       401 ~~l  403 (407)
                      ++|
T Consensus       427 ~al  429 (430)
T 3ri6_A          427 QAL  429 (430)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            886

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.90  E-value=1.6e-22  Score=193.82  Aligned_cols=279  Identities=15%  Similarity=0.215  Sum_probs=173.2

Q ss_pred             HHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH---HHHhhcCc--eeeEEEee
Q 015435           82 KLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP---KVFTLAGL--SVKTYRYY  156 (407)
Q Consensus        82 ~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~---~~~~~~G~--~~~~v~~~  156 (407)
                      +.+++++ +.     +++++++  ++| ++++.+++  ...+.+||+|+++.|+|..+.   ......|.  ..+.++. 
T Consensus        83 ~~la~~~-~~-----~~~~v~~--~sG-s~a~~~a~--~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-  150 (420)
T 3gbx_A           83 DRAKELF-GA-----DYANVQP--HSG-SQANFAVY--TALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGI-  150 (420)
T ss_dssp             HHHHHHH-TC-----SEEECCC--SSH-HHHHHHHH--HHHCCTTCEEEEEEEC------------CHHHHSEEEEEEE-
T ss_pred             HHHHHHh-CC-----CCceeEe--cCc-HHHHHHHH--HHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccC-
Confidence            4555555 42     2345545  555 88998884  444789999999999998743   22223343  4445555 


Q ss_pred             cCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc-cccCCCCCchhHHH
Q 015435          157 DPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ-GFASGSLDADAQSV  235 (407)
Q Consensus       157 ~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~-~~~~~~~~~~~~~~  235 (407)
                       +.++.+|++++++++.+. +++++++ ++|+||+  ..   ++++|+++|++||++||+||+|. ++...+..   .. 
T Consensus       151 -~~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~~~~--~~---~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~---~~-  218 (420)
T 3gbx_A          151 -DESGKIDYDEMAKLAKEH-KPKMIIG-GFSAYSG--VV---DWAKMREIADSIGAYLFVDMAHVAGLIAAGVY---PN-  218 (420)
T ss_dssp             -CTTCSCCHHHHHHHHHHH-CCSEEEE-CCTTCCS--CC---CHHHHHHHHHHTTCEEEEECTTTHHHHHTTSS---CC-
T ss_pred             -CccCCcCHHHHHHHHHhc-CCeEEEE-ecCccCC--cc---CHHHHHHHHHHcCCEEEEECCcchhceecccC---Cc-
Confidence             355679999999999732 3677766 7789875  33   48899999999999999999974 33322110   00 


Q ss_pred             HHHHHcCCcEEEEEecCccccccCCCcceeEEeecC--hhhHHHHHHHHhhhhhcccC-CCChhHHHHHHHHhcChhhHH
Q 015435          236 RMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKT--EDVASRVESQLKLVIRPMYS-SPPIHGASIVATILKDSTMYK  312 (407)
Q Consensus       236 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~  312 (407)
                          ......++++|+||.++  |.+.||+  ++++  +++.+.    +......... +++...+.++...+...    
T Consensus       219 ----~~~~~di~~~s~sK~~~--g~~gg~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~a~~~~----  282 (420)
T 3gbx_A          219 ----PVPHAHVVTTTTHKTLA--GPRGGLI--LAKGGDEELYKK----LNSAVFPSAQGGPLMHVIAGKAVALKEA----  282 (420)
T ss_dssp             ----STTTSSEEEEESSGGGC--SCSCEEE--EESSCCHHHHHH----HHHHHC----CCCCHHHHHHHHHHHHHT----
T ss_pred             ----ccccCCEEEeecccCCC--CCCceEE--EEcCCcHHHHHH----hhhhcCCCCCCCcchhHHHHHHHHHHHH----
Confidence                01124588999999985  5666888  5664  243333    3332222212 33444333333233211    


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC-CceeEEec-----CCCHHHHHHhHhhccEEEcC-------C
Q 015435          313 EWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK-QIGMFTFT-----GLNSEQVAFMTKEYHIYMTS-------D  379 (407)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~-------g  379 (407)
                       ..+..++.+++++++++++.+.|++.+    +.+..+ ..+.+.|+     +.+.+.+.+.|+++||.+.+       +
T Consensus       283 -~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~  357 (420)
T 3gbx_A          283 -MEPEFKVYQQQVAKNAKAMVEVFLNRG----YKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPK  357 (420)
T ss_dssp             -TSHHHHHHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSS
T ss_pred             -HhHhHHHHHHHHHHHHHHHHHHHHhcC----CeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCcc
Confidence             013457788889999999999998876    555442 34445554     34667788888889999987       2


Q ss_pred             ------C-eEEecC-----CCCCChhHHHHHHHHHHHh
Q 015435          380 ------G-RISMAG-----LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       380 ------g-Ris~~~-----~~~e~i~~~~~~l~~~l~~  405 (407)
                            + ||++..     .++++++++++.|++++++
T Consensus       358 ~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~  395 (420)
T 3gbx_A          358 SPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN  395 (420)
T ss_dssp             CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence                  1 888753     3468899999999988864

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.89  E-value=1.4e-22  Score=198.05  Aligned_cols=331  Identities=9%  Similarity=-0.012  Sum_probs=205.1

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCC-------CCceEEeecCCcccHHHHHHHHH
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIK-------DNRVTTVQCLSGTGSLRVGAEFL  120 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~-------~~~i~~~~t~g~t~a~~~~~~~~  120 (407)
                      +.++..+.+++.... +. ....|....+..++++.+++++....+....       ..++++  |+|||+|+..++..+
T Consensus        84 ~~~~~~~~~~~~~~~-n~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~--t~ggTeA~~~al~~~  159 (486)
T 1js3_A           84 SSYPAMLADMLCGAI-GC-IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVI--QGSASEATLVALLAA  159 (486)
T ss_dssp             CCHHHHHHHHHHHHH-CC-CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEE--ESCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh-Cc-CccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEE--cCCcHHHHHHHHHHH
Confidence            334444555554443 22 3445666666778888887776333332211       246888  999999998885333


Q ss_pred             Hh--hc-----CCC--------e--EEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC---CCcE
Q 015435          121 AR--HY-----HQL--------T--IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP---SGAI  180 (407)
Q Consensus       121 ~~--~~-----~gd--------~--Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~---~~~~  180 (407)
                      ..  +.     .||        +  |+++.++|..+...++..|++++.+|+  +.++.+|+++|++++.+..   ..+.
T Consensus       160 ~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~--d~~~~~d~~~L~~~i~~~~~~g~~p~  237 (486)
T 1js3_A          160 RTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS--DGKFAMRASALQEALERDKAAGLIPF  237 (486)
T ss_dssp             HHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeec--CCCCCCCHHHHHHHHHHHHhCCCCce
Confidence            21  11     043        3  788999999999999999999999998  3467899999999997321   1124


Q ss_pred             EEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC
Q 015435          181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE  260 (407)
Q Consensus       181 v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  260 (407)
                      +++.++|+||||.+   +++++|+++|++||+++++|++|..+.....+.... +..+ .  ....+..+++|.++.| +
T Consensus       238 ~vv~~~~~n~tG~~---~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~-~~g~-~--~adsi~~~~hK~~~~p-~  309 (486)
T 1js3_A          238 FVVATLGTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHL-LNGV-E--FADSFNFNPHKWLLVN-F  309 (486)
T ss_dssp             EEEEEBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGG-GTTG-G--GCSEEEECHHHHSSCC-S
T ss_pred             EEEEeCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHH-hcCc-c--ccCeeEEchhhhcCCC-c
Confidence            55558999999985   679999999999999999999998765421111110 0001 1  1234557899998865 8


Q ss_pred             CcceeEEeecChhh-HHHH---HHHHhhhhh---------ccc--C--CCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          261 RVGALSIVCKTEDV-ASRV---ESQLKLVIR---------PMY--S--SPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       261 r~G~~~~v~~~~~~-~~~~---~~~~~~~~~---------~~~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ++|++  ++++++. .+.+   ...+.....         .+.  .  ....+.+.++...+.        .+.+++..+
T Consensus       310 ~~G~l--~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g--------~~g~~~~~~  379 (486)
T 1js3_A          310 DCSAM--WVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG--------VKGLQAYIR  379 (486)
T ss_dssp             SCEEE--EESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH--------HHHHHHHHH
T ss_pred             ceEEE--EEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh--------HHHHHHHHH
Confidence            99999  6877653 2211   011111000         000  0  112334444444332        144677778


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccc-cCCceeEEec--CCC--HHHHHHhHhhccEEE-cCC---C----eEEecC--CC
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHI-IKQIGMFTFT--GLN--SEQVAFMTKEYHIYM-TSD---G----RISMAG--LS  388 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~--~~~--~~~~~~~l~~~gi~~-~~g---g----Ris~~~--~~  388 (407)
                      +..++++++.+.|++.+.   +++. .+..+++.|.  +.+  .+.+.+.|.+.|+.+ .++   +    |+++..  .+
T Consensus       380 ~~~~~a~~l~~~L~~~~~---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t  456 (486)
T 1js3_A          380 KHVQLSHEFEAFVLQDPR---FEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVE  456 (486)
T ss_dssp             HHHHHHHHHHHHHHHCTT---EEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCC
T ss_pred             HHHHHHHHHHHHHhcCCC---eEEeCCCceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCC
Confidence            888999999999998742   6654 3556666654  221  233333344456543 321   2    999754  35


Q ss_pred             CCChhHHHHHHHHHHHh
Q 015435          389 SKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~~  405 (407)
                      ++++++++++|++++++
T Consensus       457 ~~di~~~~~~l~~~~~~  473 (486)
T 1js3_A          457 SGHVRLAWEHIRGLAAE  473 (486)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            67899999999998765

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.89  E-value=2.7e-22  Score=196.82  Aligned_cols=329  Identities=10%  Similarity=0.048  Sum_probs=204.2

Q ss_pred             cchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh------
Q 015435           50 VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH------  123 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~------  123 (407)
                      |...+.+++.... +. ....|....+..++++.+.+++....+.+.+++++++  |+|||+++..++..+...      
T Consensus       105 ~~~~~~~~l~~~~-n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~--t~ggtea~~~al~~~~~~~~~~~~  180 (504)
T 2okj_A          105 IIGLAGEWLTSTA-NT-NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVK  180 (504)
T ss_dssp             HHHHHHHHHHHHH-CC-BSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTTHH
T ss_pred             HHHHHHHHHHHhh-cc-CCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEE--eCCcHHHHHHHHHHHHHHHhhHHh
Confidence            4444444444443 22 2344655455455555554444221121112478999  999999999986444321      


Q ss_pred             cCC-----C-eEEecCCCCCChHHHHhhcCc---eeeEEEeecCCCCCcChhhHHHHHHcC---C-CCcEEEEecCCCCC
Q 015435          124 YHQ-----L-TIYIPQPTWGNHPKVFTLAGL---SVKTYRYYDPATRGLNFQGLLEDLRAA---P-SGAIVLLHACAHNP  190 (407)
Q Consensus       124 ~~g-----d-~Vi~~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~---~-~~~~v~i~~~p~NP  190 (407)
                      .+|     + .|+++.++|..+...+...|.   +++.+|.  +.++.+|+++|++++.+.   . .+.+|++ ++|+||
T Consensus       181 ~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~-~~~~~~  257 (504)
T 2okj_A          181 TKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC--NERGKIIPADFEAKILEAKQKGYVPFYVNA-TAGTTV  257 (504)
T ss_dssp             HHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEE-CBSCSS
T ss_pred             hcCccccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEec--CCCCCCCHHHHHHHHHHHHHCCCCceEEEE-eCCCCC
Confidence            246     6 789999999999999988877   8899988  345789999999999731   1 2345555 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435          191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK  270 (407)
Q Consensus       191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~  270 (407)
                      ||.+.   ++++|+++|++||+++++|++|..+.....+.. ..   +.......++..|++|.++.| .++|++  +++
T Consensus       258 tG~i~---~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~-~~---~~g~~~~D~i~~~~hK~~~~p-~~~g~l--~~~  327 (504)
T 2okj_A          258 YGAFD---PIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR-HK---LNGIERANSVTWNPHKMMGVL-LQCSAI--LVK  327 (504)
T ss_dssp             SCCBC---CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GG---GTTGGGCSEEEECTTSTTCCC-SCCEEE--EES
T ss_pred             CCCcC---CHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhH-hh---cCCcccCCEEEECchhhcCCC-cceEEE--EEE
Confidence            99964   588889999999999999999987775321110 11   111112346778999998855 689999  677


Q ss_pred             ChhhHHHHHHHHhhhhhcccC-----------------CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 015435          271 TEDVASRVESQLKLVIRPMYS-----------------SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLF  333 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (407)
                      ++++..........+......                 ....+.+.++...+..        +.+++..++..++++++.
T Consensus       328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~--------~g~~~~~~~~~~~a~~l~  399 (504)
T 2okj_A          328 EKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT--------VGFENQINKCLELAEYLY  399 (504)
T ss_dssp             STTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhH--------HHHHHHHHHHHHHHHHHH
Confidence            665433322111111100000                 0123444444444431        346677788889999999


Q ss_pred             HHHHhcCCCCCccccc---CCceeEEecCCC-------------------HHHHHHhHhhccE-EEcC----C--C--eE
Q 015435          334 DALSARGTPGDWSHII---KQIGMFTFTGLN-------------------SEQVAFMTKEYHI-YMTS----D--G--RI  382 (407)
Q Consensus       334 ~~l~~~~~~~~~~~~~---~~~~~~~~~~~~-------------------~~~~~~~l~~~gi-~~~~----g--g--Ri  382 (407)
                      +.|++.+.   +++..   |..+++.|....                   ...+.+.|.+.|+ .+.+    +  +  |+
T Consensus       400 ~~L~~~~~---~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi  476 (504)
T 2okj_A          400 AKIKNREE---FEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRM  476 (504)
T ss_dssp             HHHTTCTT---EEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEE
T ss_pred             HHHhcCCC---EEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEE
Confidence            99988632   66553   666766664211                   1233334444564 3331    2  2  88


Q ss_pred             EecC--CCCCChhHHHHHHHHHHHhh
Q 015435          383 SMAG--LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       383 s~~~--~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++++  .+++++++++++|+++++++
T Consensus       477 s~~~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          477 VISNPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            8862  36789999999999987653

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.89  E-value=1e-21  Score=192.27  Aligned_cols=325  Identities=10%  Similarity=0.021  Sum_probs=201.5

Q ss_pred             cchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEE-eecCCcccHHHHHHHHHHhhcC---
Q 015435           50 VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTT-VQCLSGTGSLRVGAEFLARHYH---  125 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~-~~t~g~t~a~~~~~~~~~~~~~---  125 (407)
                      +++.+.+++....  ......|....+..++++.+.+++....+.+.+++++.. +.|+|+++++.+++..+  ..+   
T Consensus        68 ~~~~v~~~l~~~~--~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~--~~~~~~  143 (502)
T 3hbx_A           68 MEPECDKLIMSSI--NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAF--KRKWQN  143 (502)
T ss_dssp             CCHHHHHHHHHTT--TCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHH--HHHHHH
T ss_pred             CCHHHHHHHHHHh--ccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHH--HHHHhH
Confidence            4444444444433  112233433344555655555555332232211233221 22899999999884332  222   


Q ss_pred             -----CC-----eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCC
Q 015435          126 -----QL-----TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDP  195 (407)
Q Consensus       126 -----gd-----~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~  195 (407)
                           |+     +|+++.++|..+...++..|++++.+|++ +.++.+|++++++.+.  +++.+|++ ++|+||||.+.
T Consensus       144 ~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~--~~t~~v~~-~~~~n~tG~~~  219 (502)
T 3hbx_A          144 KRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYVMDPQQAVDMVD--ENTICVAA-ILGSTLNGEFE  219 (502)
T ss_dssp             HHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCB-TTBCSCCHHHHHHHCC--TTEEEEEE-EBSCTTTCCBC
T ss_pred             HHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecC-CCcCcCCHHHHHHHHh--hCCEEEEE-ecCCCCCCccc
Confidence                 66     89999999999999999999999999984 4447899999999997  45555555 89999999975


Q ss_pred             CHHHHHHHHHHHHHc------Cceeeecccccccc----CCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCccee
Q 015435          196 TLEQWEQIRQLMRSK------GLLPFFDSAYQGFA----SGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGAL  265 (407)
Q Consensus       196 ~~~~l~~i~~~~~~~------~~~li~D~~y~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  265 (407)
                         ++++|+++|+++      |+++++|++|.++.    ....+.+       .....-.++..|.+|.++ .+.++|++
T Consensus       220 ---~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~-------~~~~~~D~v~~s~hK~l~-~p~g~G~~  288 (502)
T 3hbx_A          220 ---DVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD-------FRLPLVKSINVSGHKYGL-VYAGIGWV  288 (502)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-------TTSTTEEEEEEETTTTTC-CCSSCEEE
T ss_pred             ---CHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccc-------cCCCCceEEEECcccccC-CCCCeEEE
Confidence               477788889998      99999999998664    2111000       011234567778899764 56788998


Q ss_pred             EEeecChhhHHHHHHHHhhhhh----ccc--CCC---ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          266 SIVCKTEDVASRVESQLKLVIR----PMY--SSP---PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL  336 (407)
Q Consensus       266 ~~v~~~~~~~~~~~~~~~~~~~----~~~--~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  336 (407)
                        ++.+++...........+..    ...  .+.   ...++.++...+..        +.+.+..++..++++++.+.|
T Consensus       289 --~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~--------~g~~~~~~~~~~~a~~l~~~L  358 (502)
T 3hbx_A          289 --IWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGH--------EGYRNVMENCRENMIVLREGL  358 (502)
T ss_dssp             --EESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             --EEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence              57655422111000000000    000  111   12223333332221        335677788888999999999


Q ss_pred             HhcCCCCCcccccC--CceeEEec--C---CCHHHHHHhHhhccEEEc----CC---C----eEEecC-CCCCChhHHHH
Q 015435          337 SARGTPGDWSHIIK--QIGMFTFT--G---LNSEQVAFMTKEYHIYMT----SD---G----RISMAG-LSSKTVPHLTD  397 (407)
Q Consensus       337 ~~~~~~~~~~~~~~--~~~~~~~~--~---~~~~~~~~~l~~~gi~~~----~g---g----Ris~~~-~~~e~i~~~~~  397 (407)
                      ++.+.   +.+..+  ..+++.|.  +   ++...+.+.|.++||.+.    |.   +    ||+++. .++++++.+++
T Consensus       359 ~~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~  435 (502)
T 3hbx_A          359 EKTER---FNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVI  435 (502)
T ss_dssp             HTTTC---EEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHH
T ss_pred             HhCCC---EEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHH
Confidence            98863   665543  55555443  2   455566666677899753    21   2    888875 57799999999


Q ss_pred             HHHHHHHhh
Q 015435          398 AIHAAVTRM  406 (407)
Q Consensus       398 ~l~~~l~~~  406 (407)
                      .|+++++.+
T Consensus       436 ~L~~~l~~l  444 (502)
T 3hbx_A          436 DIEKVMREL  444 (502)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988653

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.89  E-value=3.2e-21  Score=182.91  Aligned_cols=230  Identities=12%  Similarity=0.113  Sum_probs=160.3

Q ss_pred             ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee-cCCcccHHHHHHHHHHhhcCCCeEEecC-CCCCChHH-----
Q 015435           69 KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ-CLSGTGSLRVGAEFLARHYHQLTIYIPQ-PTWGNHPK-----  141 (407)
Q Consensus        69 ~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~-t~g~t~a~~~~~~~~~~~~~gd~Vi~~~-p~y~~~~~-----  141 (407)
                      +.|+ ..+...+++.+++++ +.       +..+++. ++||++|+.++  +...+.+||+|++++ |.|..+..     
T Consensus        54 ~~y~-~~~~~~Le~~lA~l~-g~-------e~alv~p~~~sGt~Ai~~a--l~all~~GD~Vl~~~~~~y~~~~~~~~~~  122 (409)
T 3jzl_A           54 YGYD-DEGRDTLERVYATVF-KT-------EAALVRPQIISGTHAISTV--LFGILRPDDELLYITGQPYDTLEEIVGIR  122 (409)
T ss_dssp             TCTT-CHHHHHHHHHHHHHH-TC-------SEEEEETTSCSHHHHHHHH--HHHHCCTTCEEEECSSSCCTTHHHHHTSS
T ss_pred             CCCC-hhHHHHHHHHHHHHh-CC-------CcEEEECCCccHHHHHHHH--HHHhcCCCCEEEEeCCCCcHhHHHHHhcc
Confidence            3453 346788999999988 53       3343322 67889999888  455588999999998 99999875     


Q ss_pred             -----HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecC----CCCCCCCCCCHHHHHHHHHHHHH--c
Q 015435          142 -----VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC----AHNPTGVDPTLEQWEQIRQLMRS--K  210 (407)
Q Consensus       142 -----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~----p~NPtG~~~~~~~l~~i~~~~~~--~  210 (407)
                           .++..|++++.++.+  .++.+|+++++++++  ++++++++ .+    |+||||.   ..++++|+++|++  |
T Consensus       123 g~~~~~l~~~G~~~~~v~~~--~~g~~d~e~l~~ai~--~~tklV~i-~~s~g~p~nptg~---v~~l~~I~~la~~~~~  194 (409)
T 3jzl_A          123 KQGQGSLKDFHIGYSSVPLL--ENGDVDFPRIAKKMT--PKTKMIGI-QRSRGYADRPSFT---IEKIKEMIVFVKNINP  194 (409)
T ss_dssp             SSSSSCTGGGTCEEEECCCC--TTSCCCHHHHHHHCC--TTEEEEEE-ECSCTTSSSCCCC---HHHHHHHHHHHHHHCT
T ss_pred             cchhhHHHHcCCEEEEeCCC--CCCCcCHHHHHHhcc--CCCeEEEE-ECCCCCCCCCcCc---cccHHHHHHHHHhhCC
Confidence                 446779999999883  357799999999987  56777777 66    9999998   6799999999999  9


Q ss_pred             CceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC-cceeEEeecChhhHHHHHHHHhhhhhcc
Q 015435          211 GLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER-VGALSIVCKTEDVASRVESQLKLVIRPM  289 (407)
Q Consensus       211 ~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r-~G~~~~v~~~~~~~~~~~~~~~~~~~~~  289 (407)
                      |+++++|++|..+.+...   ..       .....++++|+||.++.+|.. .||+   +.++++.+++...........
T Consensus       195 ~~~livD~a~~~~~~~~~---p~-------~~g~Div~~S~sK~lgg~~~~~GG~v---~~~~~li~~l~~~~~~~~~g~  261 (409)
T 3jzl_A          195 EVIVFVDNCYGEFVEYQE---PP-------EVGADIIAGSLIKNPGGGLAKTGGYI---AGKEALVDLCGYRLTTPGIGR  261 (409)
T ss_dssp             TCEEEEECTTCTTTSSCC---SG-------GGTCSEEEEETTSGGGTTTCSSCEEE---EECHHHHHHHHHHHSCTTTGG
T ss_pred             CCEEEEeCCcccccccCC---cc-------ccCCeEEEECccccCCccCCceEEEE---EeCHHHHHHHHHHhccccccc
Confidence            999999999987764311   11       123458999999999876644 4666   445665555544322110001


Q ss_pred             cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          290 YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       290 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      ..++....+.++...+          +....++++..+++.++.+.|++.|
T Consensus       262 ~~g~~~~~~~~~l~gl----------~~~~~r~~~~~~~a~~la~~L~~~g  302 (409)
T 3jzl_A          262 EAGASLYSLLEMYQGF----------FLAPHVTAQAIKGARFTAAMLAEFG  302 (409)
T ss_dssp             GCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            1122221122222222          2245667778889999999999988

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.88  E-value=4.6e-21  Score=183.70  Aligned_cols=164  Identities=20%  Similarity=0.126  Sum_probs=126.1

Q ss_pred             cccCCCCC--CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH--
Q 015435           68 VKEYLPIV--GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF--  143 (407)
Q Consensus        68 ~~~y~~~~--g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~--  143 (407)
                      .+.|....  ...++++++++++ +.       ++.++  +++|++|+.++++.  .+.+||+|+++.++|.++...+  
T Consensus        49 ~~~y~~~~~~~~~~l~~~la~~~-g~-------~~~v~--~~sGt~A~~~~l~~--~~~~gd~vi~~~~~~~~~~~~~~~  116 (421)
T 2ctz_A           49 GNIYSRIMNPTVDVLEKRLAALE-GG-------KAALA--TASGHAAQFLALTT--LAQAGDNIVSTPNLYGGTFNQFKV  116 (421)
T ss_dssp             GGSCBTTBCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHHHH--HCCTTCEEEECSCCCHHHHHHHHT
T ss_pred             CCcccCCCChHHHHHHHHHHHHh-CC-------CceEE--ecCHHHHHHHHHHH--HhCCCCEEEEeCCCchHHHHHHHH
Confidence            34455433  3688999999998 43       23455  56679999998533  3789999999999999887765  


Q ss_pred             --hhcCceeeEE-EeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc
Q 015435          144 --TLAGLSVKTY-RYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY  220 (407)
Q Consensus       144 --~~~G~~~~~v-~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y  220 (407)
                        +..|++++.+ +..       |++++++++.  ++++++++ ++|+||||.+.+   +++|+++|++||+++|+|++|
T Consensus       117 ~~~~~g~~~~~~~~~~-------d~~~l~~~i~--~~~~~v~~-~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~  183 (421)
T 2ctz_A          117 TLKRLGIEVRFTSREE-------RPEEFLALTD--EKTRAWWV-ESIGNPALNIPD---LEALAQAAREKGVALIVDNTF  183 (421)
T ss_dssp             HHHHTTCEEEECCTTC-------CHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGG
T ss_pred             HHHHcCCEEEEECCCC-------CHHHHHHhhc--cCCeEEEE-ECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCc
Confidence              6789999888 651       7899999887  56677776 899999999887   888889999999999999999


Q ss_pred             ccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          221 QGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      ..+.+..   ...      . ....++++|++|.++.+|.|+|+++
T Consensus       184 ~~~g~~~---~~~------~-~~~Di~~~s~~K~l~~~g~~~G~~~  219 (421)
T 2ctz_A          184 GMGGYLL---RPL------A-WGAALVTHSLTKWVGGHGAVIAGAI  219 (421)
T ss_dssp             GGGGTSC---CGG------G-GTCSEEEEETTTTTTCSSCCCCEEE
T ss_pred             ccccccC---Ccc------c-cCCeEEEECCcccccCCCCcEEEEE
Confidence            3344321   111      1 2346889999999999999999984

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.88  E-value=8.2e-22  Score=193.22  Aligned_cols=328  Identities=11%  Similarity=0.067  Sum_probs=208.6

Q ss_pred             chhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh-------
Q 015435           51 LNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH-------  123 (407)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~-------  123 (407)
                      +..+.+++....  ......|....+..++++.+++++....+.+...+.+++  |+|||+++..++..+...       
T Consensus       109 ~~~~~e~l~~~~--~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~~~  184 (511)
T 3vp6_A          109 IGLAGEWLTSTA--NTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKT  184 (511)
T ss_dssp             HHHHHHHHHHHH--CCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTHHHH
T ss_pred             HHHHHHHHHHHh--ccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEE--CCchHHHHHHHHHHHHHHhhhhhhh
Confidence            334444444333  223456877778888888888887443333333468999  999999998875333221       


Q ss_pred             -----cCCCeEEecCCCCCChHHHHhhcCc---eeeEEEeecCCCCCcChhhHHHHHHcC---CCCcEEEEecCCCCCCC
Q 015435          124 -----YHQLTIYIPQPTWGNHPKVFTLAGL---SVKTYRYYDPATRGLNFQGLLEDLRAA---PSGAIVLLHACAHNPTG  192 (407)
Q Consensus       124 -----~~gd~Vi~~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~---~~~~~v~i~~~p~NPtG  192 (407)
                           .+++.|+++.++|.++...++.+|.   +++.++.  +.++.+|+++|++++.+.   ...+.+++.+.++||||
T Consensus       185 ~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~--d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G  262 (511)
T 3vp6_A          185 KGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC--NERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG  262 (511)
T ss_dssp             HCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSC
T ss_pred             cCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeec--CCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCc
Confidence                 1467899999999999999999998   8999988  345789999999999732   11144455589999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecCh
Q 015435          193 VDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTE  272 (407)
Q Consensus       193 ~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~  272 (407)
                      .+   +++++|+++|++||+++++|++|........+.. ..   +.......++..+++|.++.| ..+|++  +++++
T Consensus       263 ~v---d~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~-~~---~~g~~~aDsv~~~~hK~l~~p-~g~g~l--~~~~~  332 (511)
T 3vp6_A          263 AF---DPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR-HK---LNGIERANSVTWNPHKMMGVL-LQCSAI--LVKEK  332 (511)
T ss_dssp             CB---CCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GG---GTTGGGCSEEEECTTSTTCCC-SCCEEE--EESST
T ss_pred             cc---ccHHHHHHHHHHcCCEEEEEccchhhHhhChhhh-hh---ccCCccCCEEEECcccccCCC-cCeEEE--EEeCH
Confidence            96   5789999999999999999999987654221100 00   111112346668999998855 677888  67776


Q ss_pred             hhHHHHHHHHhhhhhc-------------ccC----CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015435          273 DVASRVESQLKLVIRP-------------MYS----SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDA  335 (407)
Q Consensus       273 ~~~~~~~~~~~~~~~~-------------~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (407)
                      +...........+...             +..    ....+...++...+.        .+.++++.++..++.+++.+.
T Consensus       333 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g--------~~gl~~~~~~~~~~a~~l~~~  404 (511)
T 3vp6_A          333 GILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--------TVGFENQINKCLELAEYLYAK  404 (511)
T ss_dssp             THHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHH
Confidence            6444332111111100             000    012233334433332        145778889999999999999


Q ss_pred             HHhcCCCCCccccc---CCceeEEec----CCC---------------HHHHHHhHhhccEEEcC-----CC----eEEe
Q 015435          336 LSARGTPGDWSHII---KQIGMFTFT----GLN---------------SEQVAFMTKEYHIYMTS-----DG----RISM  384 (407)
Q Consensus       336 l~~~~~~~~~~~~~---~~~~~~~~~----~~~---------------~~~~~~~l~~~gi~~~~-----gg----Ris~  384 (407)
                      |++.+.   +++..   |..+++.|.    +++               ...+.+.|.++|+.+..     ++    |+++
T Consensus       405 L~~~pg---~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~  481 (511)
T 3vp6_A          405 IKNREE---FEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVI  481 (511)
T ss_dssp             HHSCTT---EEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECC
T ss_pred             HhcCCC---EEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEe
Confidence            988732   66554   556666553    110               11344444445643322     22    8887


Q ss_pred             cC--CCCCChhHHHHHHHHHHHh
Q 015435          385 AG--LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       385 ~~--~~~e~i~~~~~~l~~~l~~  405 (407)
                      ++  .+.++++.+++.|+++-+.
T Consensus       482 ~~~~~t~~di~~ll~~i~~~~~~  504 (511)
T 3vp6_A          482 SNPAATQSDIDFLIEEIERLGQD  504 (511)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHh
Confidence            43  3668899999999887654

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.88  E-value=1.1e-21  Score=189.87  Aligned_cols=287  Identities=10%  Similarity=0.076  Sum_probs=180.2

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEeecCCccc-HHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec
Q 015435           79 DFNKLSAKLILGADSPAIKDNRVTTVQCLSGTG-SLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD  157 (407)
Q Consensus        79 ~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~-a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~  157 (407)
                      ++++.+++++ +.     +++ +++  |+|+|+ ++.+++..+....+|+.|+++++.|..+...++..|++++.++...
T Consensus       137 ~~~~~la~~~-g~-----~~~-~~~--t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~  207 (456)
T 2z67_A          137 KILESFFKQL-GL-----NVH-AIA--TPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVL  207 (456)
T ss_dssp             HHHHHHHHHT-TC-----CCE-EEE--ESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred             HHHHHHHHHc-CC-----CCC-EEE--eCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEec
Confidence            3555566655 32     123 888  999994 5554432222222677899999999999999999999999988631


Q ss_pred             -CCCCCcChhhHHHHH-Hc--CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435          158 -PATRGLNFQGLLEDL-RA--APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ  233 (407)
Q Consensus       158 -~~~~~~d~~~l~~~i-~~--~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~  233 (407)
                       +.++.+|++++++++ +.  .+++.+ ++.++|+||||.+.   ++++|+++|+++|+++++|++|..+..+-   ...
T Consensus       208 ~~~~~~~d~~~l~~~i~~~~~~~~~~~-vv~~~~nn~tG~i~---~l~~I~~la~~~g~~v~vD~A~~~~~~g~---~~~  280 (456)
T 2z67_A          208 DGDRVYVPVEDIENAIKKEIELGNRPC-VLSTLTFFPPRNSD---DIVEIAKICENYDIPHIINGAYAIQNNYY---LEK  280 (456)
T ss_dssp             ETTEEECCHHHHHHHHHHHHHTTCCEE-EEEESSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTTTTCHHH---HHH
T ss_pred             cCCCCCcCHHHHHHHHHHHhhCCCeEE-EEEeCCCCCCCCcC---CHHHHHHHHHHcCCcEEEECcchHHHHHh---hHH
Confidence             344689999999999 42  123344 44488999999975   57888888999999999999997665420   001


Q ss_pred             HHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHh
Q 015435          234 SVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKE  313 (407)
Q Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  313 (407)
                      ....+ .. ...+++.|++|.++ .+.++|++  +++++++.+.+    ...........+.+++.++...+.       
T Consensus       281 ~~~~~-~~-~~D~~~~s~hK~~~-~p~g~G~l--~~~~~~~~~~l----~~~~~g~~~~~~~~~~~aal~~l~-------  344 (456)
T 2z67_A          281 LKKAF-KY-RVDAVVSSSDKNLL-TPIGGGLV--YSTDAEFIKEI----SLSYPGRASATPVVNTLVSLLSMG-------  344 (456)
T ss_dssp             HHHHH-TS-CCSEEEEEHHHHHC-CCSSCEEE--EESCHHHHHHH----HTTSCSCBCSHHHHHHHHHHHHHH-------
T ss_pred             HHHhh-CC-CCCEEEEcCCCCcC-CCCCeEEE--EEcCHHHHhhc----CcCCCCCCCCCHHHHHHHHHHHHH-------
Confidence            11111 11 33467889999655 56889999  57666554443    111111111122333444443332       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCcccccCCceeEEe-cCCC--HHHHHHhHhhccE---EEc------
Q 015435          314 WTLELKAMADRIISMRQQLFDALSAR----GTPGDWSHIIKQIGMFTF-TGLN--SEQVAFMTKEYHI---YMT------  377 (407)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~l~~~gi---~~~------  377 (407)
                       ...+++.+++..++++++.+.|++.    |    ..+..+. +++.+ +..+  ...+.+.|.++||   .+.      
T Consensus       345 -~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g----~~v~~~~-~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f  418 (456)
T 2z67_A          345 -SKNYLELVKNQKNSKKLLDELLNDLSKKTG----GKFLDVE-SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHF  418 (456)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCBCCCC-CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhcccccC----CEecCCC-CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCcc
Confidence             1346777888999999999999887    5    4444444 33332 1112  2334444444554   343      


Q ss_pred             --------CCC--eEEecC-CCCCChhHHHHHHHHHH
Q 015435          378 --------SDG--RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       378 --------~gg--Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                              +.+  |++++. .+++++++++++|++++
T Consensus       419 ~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          419 GNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             HHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             ccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence                    223  888763 48899999999998764

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.88  E-value=2.7e-21  Score=184.92  Aligned_cols=230  Identities=13%  Similarity=0.109  Sum_probs=157.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecC-CCCCChHHHH----------h
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQ-PTWGNHPKVF----------T  144 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~-p~y~~~~~~~----------~  144 (407)
                      +..++++.+++++ +....   ..++++  + ||++|+..+  +...+.+||+|+++. |.|..+...+          +
T Consensus        66 ~~~~l~~~la~~~-g~~~~---~~~i~~--~-sGt~Ai~~a--l~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~  136 (431)
T 3ht4_A           66 GRDTLEKVYADVF-GAEAG---LVRPQI--I-SGTHAISTA--LFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFK  136 (431)
T ss_dssp             HHHHHHHHHHHHT-TCSEE---CCBTTS--C-SHHHHHHHH--HHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSG
T ss_pred             hHHHHHHHHHHHh-CCCcc---ccccee--e-CHHHHHHHH--HHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHH
Confidence            4566777777766 43211   123335  5 778999998  455578999999998 9999988655          4


Q ss_pred             hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHH--cCceeeecccccc
Q 015435          145 LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS--KGLLPFFDSAYQG  222 (407)
Q Consensus       145 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~li~D~~y~~  222 (407)
                      ..|.+++.++.+  .++.+|++++++++.  +++++|++.++||||||..++.+++++|+++|++  +|+++|+|++|..
T Consensus       137 ~~G~~~~~v~~~--~~~~~d~e~l~~~l~--~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~  212 (431)
T 3ht4_A          137 EYNIGYNAVPLT--EGGLVDFEAVAAAIH--SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGE  212 (431)
T ss_dssp             GGTCEEEECCBC--TTSSBCHHHHHHHCC--TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT
T ss_pred             HcCCEEEEeCCC--CCCCcCHHHHHhhcC--CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChh
Confidence            579999999983  347899999999997  5678888866899999999999999999999999  9999999999998


Q ss_pred             ccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc-cCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHH
Q 015435          223 FASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL-YGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIV  301 (407)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (407)
                      +.+...   ..      . ....++++|+||.+|. .+...||+  ++ ++++.+.+.............+++...+.++
T Consensus       213 ~~~~~~---~~------~-~g~Di~~~S~sK~lgg~~~~~GG~v--~~-~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~  279 (431)
T 3ht4_A          213 FIEEQE---PC------H-VGADLMAGSLIKNPGGGIVKTGGYI--VG-KEQYVEACAYRLTSPGIGAEAGASLYSLQEM  279 (431)
T ss_dssp             TSSSCC---GG------G-TTCSEEEEETTSGGGTTTCSSCEEE--EE-CHHHHHHHHHHHSCTTTTTSCSCCCSCSHHH
T ss_pred             hccCCC---cc------c-cCCeEEEcCccccCCCCCCCceEEE--Ee-cHHHHHHHHHHhccCCcccccCccHHHHHHH
Confidence            876421   11      1 1235899999999763 22344787  45 4555444443222111011112211112222


Q ss_pred             HHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015435          302 ATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT  341 (407)
Q Consensus       302 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  341 (407)
                      ...+          +.....+++..++++++.+.|++.|.
T Consensus       280 ~~~l----------~~~~~~~~~~~~~a~~l~~~L~~~g~  309 (431)
T 3ht4_A          280 YQGF----------FLAPHVAGQALKGAIFTAAFLEKLGM  309 (431)
T ss_dssp             HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhHh----------hhHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            2222          22445667788899999999998883

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.88  E-value=5.6e-21  Score=182.07  Aligned_cols=213  Identities=14%  Similarity=0.093  Sum_probs=149.7

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCce
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGLS  149 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~  149 (407)
                      .....++++.+++++ +.       +++++  ++||++|+.+++  ...+.+||+|+++.+.|.+....+    +..|++
T Consensus        81 ~p~~~~le~~lA~l~-g~-------~~~i~--~ssGt~Ai~~al--~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~  148 (415)
T 2fq6_A           81 TLTHFSLQQAMCELE-GG-------AGCVL--FPCGAAAVANSI--LAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVT  148 (415)
T ss_dssp             CHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHH--HTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCE
T ss_pred             CchHHHHHHHHHHHh-CC-------CeEEE--eCCHHHHHHHHH--HHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcE
Confidence            344778999999988 43       46777  889999999883  445789999999999998777554    467999


Q ss_pred             eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHH--cCceeeeccccccccCCC
Q 015435          150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS--KGLLPFFDSAYQGFASGS  227 (407)
Q Consensus       150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~li~D~~y~~~~~~~  227 (407)
                      ++.++.       .|+++++++++  +++++|++ ++|+||||.+.+   +++|+++|++  +|+++|+|++|+......
T Consensus       149 v~~v~~-------~d~~~le~ai~--~~tklV~~-e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~~  215 (415)
T 2fq6_A          149 TSWFDP-------LIGADIVKHLQ--PNTKIVFL-ESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLFK  215 (415)
T ss_dssp             EEEECT-------TCGGGGGGGCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSSC
T ss_pred             EEEECC-------CCHHHHHHhhc--cCCcEEEE-ECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccCC
Confidence            988864       27889998887  56777777 899999999885   7888888999  999999999987554321


Q ss_pred             CCchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhc
Q 015435          228 LDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK  306 (407)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  306 (407)
                          .     + . ....++++|++|.++.+|.++ ||+  +++ +++.+.+..    .........+...+..+...+ 
T Consensus       216 ----p-----~-~-~g~Div~~S~sK~lg~~g~~~~G~l--~~~-~~~~~~l~~----~~~~~G~~~~~~~a~~~~~~l-  276 (415)
T 2fq6_A          216 ----A-----L-D-FGIDVSIQAATKYLVGHSDAMIGTA--VCN-ARCWEQLRE----NAYLMGQMVDADTAYITSRGL-  276 (415)
T ss_dssp             ----G-----G-G-GTCSEEEEETTTTTTCSSSCCCEEE--EEC-TTTHHHHHH----HHHHTTCCCCHHHHHHHHHHH-
T ss_pred             ----c-----c-c-cCCeEEEEeCccccCCCCCceEEEE--EeC-HHHHHHHHH----HHHhcCCCCCHHHHHHHHhhh-
Confidence                1     1 1 235688999999999888764 777  454 455444433    222222233433333332222 


Q ss_pred             ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435          307 DSTMYKEWTLELKAMADRIISMRQQLFDALSAR  339 (407)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  339 (407)
                               +.+....++..++.+.+.+.|++.
T Consensus       277 ---------~~l~~r~~~~~~n~~~l~~~L~~~  300 (415)
T 2fq6_A          277 ---------RTLGVRLRQHHESSLKVAEWLAEH  300 (415)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHHHHcC
Confidence                     223444555667778888888765

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.88  E-value=1.3e-21  Score=191.73  Aligned_cols=329  Identities=12%  Similarity=0.103  Sum_probs=204.0

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH--hh--
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA--RH--  123 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~--~~--  123 (407)
                      +.++.++.++..... +. ..+.|.......++.+.+.+++....+.+ ..+++++  |+|||+++..++..++  .+  
T Consensus       111 ~~~~~v~~~~~~~~~-n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~--t~ggt~a~~~al~~ar~~~~~~  185 (497)
T 2qma_A          111 PLMPAVAAEAMIAAL-NQ-SMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIF--TSGGTQSNQMGLMLARDWIADK  185 (497)
T ss_dssp             CBHHHHHHHHHHHHH-CC-CTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEE--ESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhh-cc-cccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEE--cCCchHHHHHHHHHHHHHHHHh
Confidence            445566666655554 22 33445444455566555444442222211 1268999  9999999999865432  12  


Q ss_pred             -------cC------CC-eEEecCCCCCChHHHHhhcCc---eeeEEEeecCCCCCcChhhHHHHHHcC--CCC-cEEEE
Q 015435          124 -------YH------QL-TIYIPQPTWGNHPKVFTLAGL---SVKTYRYYDPATRGLNFQGLLEDLRAA--PSG-AIVLL  183 (407)
Q Consensus       124 -------~~------gd-~Vi~~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~--~~~-~~v~i  183 (407)
                             .+      |+ .|+++.+.|..+...+...|.   +++.+|.  +.++.+|+++|++.+.+.  ..+ +.+++
T Consensus       186 ~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~~~~~~~vv  263 (497)
T 2qma_A          186 LSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDA--NADGTMDITKLDEVIAQAKAEGLIPFAIV  263 (497)
T ss_dssp             HHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSSBCGGGHHHHHHHHHHTTCEEEEEE
T ss_pred             hcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEec--CCCCcCCHHHHHHHHHHHHHCCCcceEEE
Confidence                   12      46 799999999999999888876   7899998  345789999999998732  123 33444


Q ss_pred             ecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435          184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG  263 (407)
Q Consensus       184 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  263 (407)
                      .+.++||||.+   +++++|+++|++||+++++|++|..+....   + +.. .+.......+++.|++|.++.| .++|
T Consensus       264 ~~~~~~~tG~~---~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~---~-~~~-~~~gi~~~D~i~~s~hK~l~~p-~~~G  334 (497)
T 2qma_A          264 GTAGTTDHGAI---DDLDFIADMAVKHDMWMHVDGAYGGALILS---S-HKS-RLKGVERAHSISVDFHKLFYQT-ISCG  334 (497)
T ss_dssp             EEBSCTTTCCB---CCHHHHHHHHHHHTCEEEEEETTGGGGGGS---T-TGG-GGTTGGGCSEEEEETTTTTCCC-SSCE
T ss_pred             EcCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhhHHHHhC---c-chH-hhcCcccCCEEEEcchhccCCC-cceE
Confidence            48899999994   468889999999999999999998776532   1 100 0111112236778999988865 6999


Q ss_pred             eeEEeecChhhHHHHHHHHhhhhhccc-CCC-------------ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 015435          264 ALSIVCKTEDVASRVESQLKLVIRPMY-SSP-------------PIHGASIVATILKDSTMYKEWTLELKAMADRIISMR  329 (407)
Q Consensus       264 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  329 (407)
                      ++  +++++...+.+... ..+..... ..+             ..+.+.++...+..        +.+++..++..+++
T Consensus       335 ~l--~~~~~~~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~--------~g~~~~~~~~~~~a  403 (497)
T 2qma_A          335 AL--LVNDKSNFKFLLHH-ADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGP--------KALGDMYDHLLAQT  403 (497)
T ss_dssp             EE--EESCGGGGGGGCC---------------------CCSCCCTHHHHHHHHHHTCH--------HHHHHHHHHHHHHH
T ss_pred             EE--EEeCHHHHHHhcCC-chhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCH--------HHHHHHHHHHHHHH
Confidence            99  67766532221100 00000000 001             11223333333321        34667778888999


Q ss_pred             HHHHHHHHhcCCCCCcccc-cCCceeEEec--CC--CH----HHHHHhHhhccEEEcCC----C----eEEec--CCCCC
Q 015435          330 QQLFDALSARGTPGDWSHI-IKQIGMFTFT--GL--NS----EQVAFMTKEYHIYMTSD----G----RISMA--GLSSK  390 (407)
Q Consensus       330 ~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~--~~--~~----~~~~~~l~~~gi~~~~g----g----Ris~~--~~~~e  390 (407)
                      +++.+.|++.+.   +++. .+..+++.|.  +.  ..    +.+...+.+.|+.+.++    |    ||+++  ..+++
T Consensus       404 ~~l~~~L~~~~~---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~e  480 (497)
T 2qma_A          404 LEVADMIRTNDQ---FELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTS  480 (497)
T ss_dssp             HHHHHHHHTCTT---EEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHH
T ss_pred             HHHHHHHhhCCC---eEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHH
Confidence            999999998642   6653 4556655543  21  11    22334445578877542    2    99873  24779


Q ss_pred             ChhHHHHHHHHHHHhh
Q 015435          391 TVPHLTDAIHAAVTRM  406 (407)
Q Consensus       391 ~i~~~~~~l~~~l~~~  406 (407)
                      ++++++++|+++++++
T Consensus       481 di~~~~~~l~~~~~~~  496 (497)
T 2qma_A          481 DFESLLSKINMLAVEL  496 (497)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998764

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.88  E-value=3.3e-22  Score=192.92  Aligned_cols=285  Identities=12%  Similarity=0.035  Sum_probs=178.0

Q ss_pred             CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCcee
Q 015435           71 YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSV  150 (407)
Q Consensus        71 y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~  150 (407)
                      |.+.....++++.+++ + +.      ++++++  |+|+|+++.+++  ...+.+||+|+++.|+|..+...+...|+++
T Consensus        53 ~~~~~~~~~~~~~la~-~-g~------~~~v~~--~~G~t~a~~~~~--~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~  120 (446)
T 2x3l_A           53 HHPEEVILKSMKQVEK-H-SD------YDGYFL--VNGTTSGILSVI--QSFSQKKGDILMARNVHKSVLHALDISQQEG  120 (446)
T ss_dssp             TSCSSHHHHHHHHHCS-C-TT------EEEEEE--SSHHHHHHHHHH--HTTTTSSSCEEECTTCCHHHHHHHHHHTCCE
T ss_pred             cCcchHHHHHHHHHHh-c-CC------CceEEE--eCCHHHHHHHHH--HHhcCCCCEEEEecCccHHHHHHHHHcCCeE
Confidence            3455567788888887 5 43      157888  999999999994  4447899999999999999999999999999


Q ss_pred             eEEEeecCCC----CCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccc-ccC
Q 015435          151 KTYRYYDPAT----RGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG-FAS  225 (407)
Q Consensus       151 ~~v~~~~~~~----~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~-~~~  225 (407)
                      +.++...+..    +.+|++++   +.  ++++++++ ++ +|+||.+.+   +++|+++|++||+++|+|++|.. +.+
T Consensus       121 ~~v~~~~~~~~~~~~~~d~~~l---~~--~~~~~v~~-~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f  190 (446)
T 2x3l_A          121 HFIETHQSPLTNHYNKVNLSRL---NN--DGHKLVVL-TY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL  190 (446)
T ss_dssp             EECEEEECTTTSSEEEEEC------------CCEEEE-ES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred             EEEeCeeccccCcCCCCCHHHH---cC--CCceEEEE-EC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence            9998732222    46788877   33  56777777 55 566999987   77888889999999999999986 333


Q ss_pred             CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhh-HHHHHHHHhhhhhcccCCCChhHHHHHHHH
Q 015435          226 GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV-ASRVESQLKLVIRPMYSSPPIHGASIVATI  304 (407)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (407)
                      .+.   ..+.   ... ...+++.|+||.++ ++.++||+  +++++.+ ...+....   ......+++...+.++..+
T Consensus       191 ~~~---~~~~---~~~-g~Di~~~S~~K~l~-~~~g~g~l--~~~~~~i~~~~~~~~~---~~~~~~s~~~~~~aal~~a  257 (446)
T 2x3l_A          191 QGF---PDST---LNY-QADYVVQSFHKTLP-ALTMGSVL--YIHKNAPYRENIIEYL---SYFQTSSPSYLIMASLESA  257 (446)
T ss_dssp             TTS---CCCG---GGG-TCSEEEECHHHHSS-SCTTCEEE--EEETTCTTHHHHHHHH---HHHSCSSCCHHHHHHHHHH
T ss_pred             CCC---CCCh---HHc-CCCEEEECCccccc-cccccEEE--EEcCCcCCHHHHHHHH---HHHcCCCchHHHHHHHHHH
Confidence            321   1111   111 23488999999654 33457998  5654321 11222211   1112224444333333222


Q ss_pred             hcChhhHHhHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec---CCCHHHHHHhHhhccEEEc-CC
Q 015435          305 LKDSTMYKEWTLE-LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT---GLNSEQVAFMTKEYHIYMT-SD  379 (407)
Q Consensus       305 l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~-~g  379 (407)
                      ++..      ... .++..++.+++++++.+.    +    +.+..+..+.+.|+   +.+...+.+.|.++||.+. ++
T Consensus       258 ~~~l------~~~g~~~~~~~~~~l~~~l~~~----g----~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g  323 (446)
T 2x3l_A          258 AQFY------KTYDSTLFFAKRAQLIECLENK----G----FEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELAD  323 (446)
T ss_dssp             HHHH------HHCCCHHHHHHHHHHHHHHHHH----T----CEEEECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEEC
T ss_pred             HHHH------HHhCHHHHHHHHHHHHHHHHHc----C----CEECcCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEecC
Confidence            2110      111 112445555555665554    4    45444333334444   4466666655555699998 55


Q ss_pred             C---eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          380 G---RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       380 g---Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                      .   |++++. .+++++ +++++|++++++
T Consensus       324 ~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~  352 (446)
T 2x3l_A          324 DYQALAILPLWHHDDTY-LFDSLLRKIEDM  352 (446)
T ss_dssp             SSCEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred             CCEEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence            3   998874 478999 999999998764

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.88  E-value=7.3e-21  Score=181.05  Aligned_cols=228  Identities=15%  Similarity=0.147  Sum_probs=157.0

Q ss_pred             CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecC-CCCCChHH-----------
Q 015435           74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQ-PTWGNHPK-----------  141 (407)
Q Consensus        74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~-p~y~~~~~-----------  141 (407)
                      ..+...+++.+++++ +..      ..+++.+++||++|+.++  +...+.+||+|++++ |.|..+..           
T Consensus        72 ~~~~~~Le~~lA~l~-g~e------~alv~p~~~sGt~Ai~~a--l~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~  142 (427)
T 3i16_A           72 DIGRDSLDAVYARVF-NTE------SALVRPHFVNGTHALGAA--LFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMG  142 (427)
T ss_dssp             CHHHHHHHHHHHHHH-TCS------EEEEETTCCSHHHHHHHH--HHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSC
T ss_pred             HHHHHHHHHHHHHHh-CCc------ceEEeCCCccHHHHHHHH--HHHHhCCCCEEEEeCCCccHHHHHHHhccccchHH
Confidence            346788999999988 531      223211157889999888  455688999999999 99998874           


Q ss_pred             HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecC----CCCCCCCCCCHHHHHHHHHHHHH--cCceee
Q 015435          142 VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC----AHNPTGVDPTLEQWEQIRQLMRS--KGLLPF  215 (407)
Q Consensus       142 ~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~----p~NPtG~~~~~~~l~~i~~~~~~--~~~~li  215 (407)
                      .++..|++++.++.+  .++.+|++++++++.+.++++++++ ++    |+||||.   ..++++|+++|++  +|++++
T Consensus       143 ~l~~~G~~~~~v~~~--~~g~~D~e~l~~~l~~~~~tklV~i-~~s~~~p~nptg~---i~dl~~i~~la~~~~~g~~li  216 (427)
T 3i16_A          143 SLKEFGINYKQVDLK--EDGKPNLEEIEKVLKEDESITLVHI-QRSTGYGWRRALL---IEDIKSIVDCVKNIRKDIICF  216 (427)
T ss_dssp             CTGGGTCEEEECCCC--TTSSCCHHHHHHHHHTCTTEEEEEE-ECSCCSSSSCCCC---HHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHcCCEEEEecCc--cCCCcCHHHHHHHhhCCCCCEEEEE-EcCCCCCCCCccc---HHHHHHHHHHHHHhCCCCEEE
Confidence            445679999999883  3467999999999984345677777 56    8888887   7899999999999  999999


Q ss_pred             eccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCC
Q 015435          216 FDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPP  294 (407)
Q Consensus       216 ~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (407)
                      +|++|..+.+...   ..       .....++++|+||.++.+| .+.||+  ++ ++++.+++...+.... ......+
T Consensus       217 vD~a~~~~~~~~~---p~-------~~gaDiv~~S~sK~lgg~g~~~gG~i--~~-~~~li~~l~~~~~~~~-~g~~~~~  282 (427)
T 3i16_A          217 VDNCYGEFMDTKE---PT-------DVGADLIAGSLIKNIGGGIAPTGGYL--AG-TKDCIEKTSYRLTVPG-IGGECGS  282 (427)
T ss_dssp             EECTTTTTSSSSC---GG-------GGTCSEEEEETTSGGGTTTCCSCEEE--EE-CHHHHHHHHHHHSCTT-TGGGCCC
T ss_pred             EECCCccccccCC---cc-------ccCCeEEEecCcccCCCCCCceEEEE--EE-CHHHHHHHHHhcccCc-cCccCCc
Confidence            9999987774311   11       1234588999999998766 456777  44 4555554443221110 0011112


Q ss_pred             hhH-HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          295 IHG-ASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       295 ~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      ... ...+...+          +....+++++.+++.++.+.|++.|
T Consensus       283 ~~~~a~~~l~gl----------~~~~~r~~~~~~~a~~la~~L~~~g  319 (427)
T 3i16_A          283 TFGVVRSMYQGL----------FLAPHISMEALKGAILCSRIMELAG  319 (427)
T ss_dssp             CTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            122 22222221          2345677888899999999999988

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.88  E-value=1.4e-20  Score=179.19  Aligned_cols=226  Identities=12%  Similarity=0.112  Sum_probs=155.9

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEe-ecCCcccHHHHHHHHHHhhcCCCeEEecC-CCCCChH-----------H
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTV-QCLSGTGSLRVGAEFLARHYHQLTIYIPQ-PTWGNHP-----------K  141 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~-~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~-p~y~~~~-----------~  141 (407)
                      .|...+++.+++++ +.       +..++. +++||++|+.++  +...+.+||+|++++ |.|..+.           .
T Consensus        74 ~g~~~Le~~lA~l~-g~-------e~alv~p~~~sGt~A~~~a--l~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~  143 (427)
T 3hvy_A           74 IGRDSLDRVYANIF-NT-------ESAFVRPHFVNGTHAIGAA--LFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVG  143 (427)
T ss_dssp             HHHHHHHHHHHHHH-TC-------SEEEEETTCCSHHHHHHHH--HHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSC
T ss_pred             hhHHHHHHHHHHHh-CC-------CceEEeCCCCcHHHHHHHH--HHHhcCCCCEEEEeCCCCchhHHHHhccccchhhh
Confidence            46889999999988 53       333221 157889999888  455688999999999 9998876           3


Q ss_pred             HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecC----CCCCCCCCCCHHHHHHHHHHHHH--cCceee
Q 015435          142 VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC----AHNPTGVDPTLEQWEQIRQLMRS--KGLLPF  215 (407)
Q Consensus       142 ~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~----p~NPtG~~~~~~~l~~i~~~~~~--~~~~li  215 (407)
                      .++..|++++.++.   +++.+|++++++++.+.+++++|++ ++    |+||||.   ..++++|+++|++  +|++++
T Consensus       144 ~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~~~tklV~i-~~s~gyp~nptg~---v~dl~~i~~ia~~~~~g~~li  216 (427)
T 3hvy_A          144 SLREYGVKYKMVDL---KDGKVDINTVKEELKKDDSIKLIHI-QRSTGYGWRKSLR---IAEIAEIIKSIREVNENVIVF  216 (427)
T ss_dssp             CTGGGTCEEEECCC---BTTBCCHHHHHHHHHHCTTEEEEEE-ESSCCSSSSCCCC---HHHHHHHHHHHHHHCSSSEEE
T ss_pred             HHHHcCCEEEEecC---CCCCcCHHHHHHHhhCCCCCEEEEE-ECCCCCCCCcccc---HHHHHHHHHHHHHhCCCCEEE
Confidence            45567999999987   2467999999999974345677777 55    8888887   6899999999999  899999


Q ss_pred             eccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhhhhcccCCCC
Q 015435          216 FDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPP  294 (407)
Q Consensus       216 ~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (407)
                      +|++|..+.+...   ..      . ....++++|+||.++.+|. +.|++   +.++++.+++........-....+++
T Consensus       217 vD~a~~~~~~~~~---p~------~-~gaDiv~~S~sK~lgg~g~~~GG~i---~~~~~li~~l~~~~~~~~~g~~~~~~  283 (427)
T 3hvy_A          217 VDNCYGEFVEEKE---PT------D-VGADIIAGSLIKNIGGGIATTGGYI---AGKEEYVTQATFRVTVPGIGGECGST  283 (427)
T ss_dssp             EECTTCTTTSSSC---GG------G-GTCSEEEEETTSGGGTTTCCSCEEE---EECHHHHHHHHHHHSCTTTGGGCCCC
T ss_pred             EECCccccccCCC---Cc------c-cCCeEEEECCcccccccccceEEEE---EECHHHHHHHHHHhhcCCcccccCCC
Confidence            9999987774311   11      1 1345899999999986664 45666   44566555544422111000111221


Q ss_pred             hhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435          295 IHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG  340 (407)
Q Consensus       295 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  340 (407)
                      ...+..+...+          +....++++..+++.++.+.|++.|
T Consensus       284 ~~~a~~~~~gl----------~~~~~r~~~~~~~a~~la~~L~~~g  319 (427)
T 3hvy_A          284 FGVMRSLYEGL----------FMAPHVTIEAVKGAVFCARIMELAG  319 (427)
T ss_dssp             TTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhH----------hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            21122322222          2244667788889999999999988

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.87  E-value=3.3e-22  Score=190.51  Aligned_cols=280  Identities=15%  Similarity=0.095  Sum_probs=177.1

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC-hHHHHhhc--CceeeEE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN-HPKVFTLA--GLSVKTY  153 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~-~~~~~~~~--G~~~~~v  153 (407)
                      ..++++.+++++ +..    ++++|+++ |+|+|+++.+++  ...+.+| .+++..+.|.. ....+...  |.+++.+
T Consensus        80 ~~~~~~~la~~~-g~~----~~~~i~~~-t~g~t~al~~~~--~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v  150 (398)
T 2fyf_A           80 VGRVRSGLAELF-SLP----DGYEVILG-NGGATAFWDAAA--FGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIII  150 (398)
T ss_dssp             HHHHHHHHHHHT-TCC----TTCEEEEE-ETCHHHHHHHHH--HHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEE
T ss_pred             HHHHHHHHHHHh-CCC----CCceEEEe-CCchhHHHHHHH--HHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEE
Confidence            567888888877 432    12455431 899999999994  4346676 22232222311 12234444  8889889


Q ss_pred             EeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435          154 RYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ  233 (407)
Q Consensus       154 ~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~  233 (407)
                      +.+  .+...+.+     +.  ++++++++ ++|+||||.+++.+++.++      +|+++|+|++|..+... .  +  
T Consensus       151 ~~~--~g~~~~~~-----i~--~~~~~v~~-~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~~-~--~--  209 (398)
T 2fyf_A          151 TSD--PGSAPEPQ-----TD--PSVDVIAW-AHNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGLP-V--D--  209 (398)
T ss_dssp             ECC--TTCCCCCC-----CC--TTCSEEEE-ESEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTSC-C--C--
T ss_pred             ecC--CCCCCCcc-----cc--CCCCEEEE-eCcCCCcceecchHHhhhh------cCCeEEEEeccccCCcc-c--C--
Confidence            883  33333321     23  56778777 7899999999987776665      89999999999765532 1  1  


Q ss_pred             HHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH---------hhh----h----hcccCCCChh
Q 015435          234 SVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL---------KLV----I----RPMYSSPPIH  296 (407)
Q Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~---------~~~----~----~~~~~~~~~~  296 (407)
                          + .  +..+++.|+||.++++| ++||+  +++ +++.+++....         ...    .    .....+++..
T Consensus       210 ----~-~--~~di~~~s~sK~~~~~g-g~g~l--~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  278 (398)
T 2fyf_A          210 ----I-A--ETDAYYFAPQKNFASDG-GLWLA--IMS-PAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIA  278 (398)
T ss_dssp             ----G-G--GCSEEEECTTSTTCSCS-SEEEE--EEC-HHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHH
T ss_pred             ----c-c--cCcEEEEecCcccCCCC-ceEEE--EEC-HHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHH
Confidence                1 1  13478899999999775 58988  454 44444432210         000    0    1122355666


Q ss_pred             HHHHHHHHhcChhhHHhHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--C--CceeEEecC----CCHHHHH
Q 015435          297 GASIVATILKDSTMYKEWTLE--LKAMADRIISMRQQLFDALSARGTPGDWSHII--K--QIGMFTFTG----LNSEQVA  366 (407)
Q Consensus       297 ~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~--~~~~~~~~~----~~~~~~~  366 (407)
                      ++.++..+++..      .+.  +++.+++++++++++.+.|++.+.   +.+..  +  .++++.|+.    .+.+.+.
T Consensus       279 ~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  349 (398)
T 2fyf_A          279 TLALLAEQIDWL------VGNGGLDWAVKRTADSSQRLYSWAQERPY---TTPFVTDPGLRSQVVGTIDFVDDVDAGTVA  349 (398)
T ss_dssp             HHHHHHHHHHHH------HHHTSHHHHHHHHHHHHHHHHHHHHHSTT---EEESCCSGGGBCSSEEEEEECTTSCHHHHH
T ss_pred             HHHHHHHHHHHH------HHccCHHHHHHHHHHHHHHHHHHHHHcCC---ceeccCChhhcCCcEEEEECCCCCCHHHHH
Confidence            666666666422      122  677888999999999999998731   55542  3  345455543    3555555


Q ss_pred             HhHhhccEEEcCC------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          367 FMTKEYHIYMTSD------G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       367 ~~l~~~gi~~~~g------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.|.++||.+.++      +  ||+++. .+++++++++++|+++++++
T Consensus       350 ~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~~  398 (398)
T 2fyf_A          350 KILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVERL  398 (398)
T ss_dssp             HHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHhC
Confidence            5555569999764      2  999874 47899999999999988763

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.87  E-value=1.4e-21  Score=186.55  Aligned_cols=333  Identities=11%  Similarity=0.029  Sum_probs=209.4

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++++||+..|....+.| ..++++++++.+++.  .. .+...+..-..++.+.+++.+.+       .+.+.+  +
T Consensus        83 D~dG~~ylD~~~g~~~~~lG-H~hp~v~~Av~~q~~--~~-~~~~~~~~~~~~lae~l~~~~p~-------~~~v~f--~  149 (454)
T 4ao9_A           83 DADGHRYADFIAEYTAGVYG-HSAPEIRDAVIEAMQ--GG-INLTGHNLLEGRLARLICERFPQ-------IEQLRF--T  149 (454)
T ss_dssp             ETTCCEEEESSGGGGTTTTC-SCCHHHHHHHHHHHH--TC-SCCCSEESSHHHHHHHHHHHSTT-------CSEEEE--E
T ss_pred             ECCCCEEEEccccHHhhccc-CCCHHHHHHHHHHHh--cC-CCccCCcHHHHHHHHHHHHhCCC-------CCEEEE--e
Confidence            34678999999887655666 667788888888886  21 22122344566788888887733       278999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc----CceeeEEEeecCCCCCcChhhHHHHHHcCC-CCcEE
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA----GLSVKTYRYYDPATRGLNFQGLLEDLRAAP-SGAIV  181 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~----G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~~~~v  181 (407)
                      +||++|++.++++.+.....++|+...-+|.+........    +........  +.   -|++.+++.+.+.. +..++
T Consensus       150 ~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~--p~---nd~~~l~~~l~~~~~~iAav  224 (454)
T 4ao9_A          150 NSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVL--PY---NDAQTARAQIERHGPEIAVV  224 (454)
T ss_dssp             SSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEE--CT---TCHHHHHHHHHHTGGGEEEE
T ss_pred             CchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccC--CC---chHHHHHHHHhhcCCceEEE
Confidence            9999999999988877766788999998888765433211    111111111  21   37888998887543 34555


Q ss_pred             EEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC
Q 015435          182 LLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE  260 (407)
Q Consensus       182 ~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  260 (407)
                      ++ -..+...|.+ .+++.|++|.++|++||++||+||+..+  ..+   .......+.- ..+++   +++|.+| .|+
T Consensus       225 Iv-EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G---~~~a~e~~gv-~PDi~---t~gK~lg-gG~  293 (454)
T 4ao9_A          225 LV-EPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLA---PHGLANKLGI-RSDLT---TLGKYIG-GGM  293 (454)
T ss_dssp             EE-CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGS---TTCHHHHHTC-CCSEE---EEEGGGG-TTS
T ss_pred             Ee-ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCc---cccchhccCC-CCcEE---EeccccC-CCC
Confidence            55 3334445655 6788999999999999999999999874  222   1222222221 22333   4789998 789


Q ss_pred             CcceeEEeecChhhHHHHHHHHhhh----hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          261 RVGALSIVCKTEDVASRVESQLKLV----IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL  336 (407)
Q Consensus       261 r~G~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  336 (407)
                      ++|.+  ++.     +++.+.+...    ....+++.+++++.++.+.|+...        -++..++++++.++|.+.|
T Consensus       294 Piga~--~~~-----~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~--------~~~~~~~~~~~g~~l~~~L  358 (454)
T 4ao9_A          294 SFGAF--GGR-----ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLF--------TPEAAGALAERGEALRARL  358 (454)
T ss_dssp             SCEEE--EEC-----HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTS--------CHHHHHHHHHHHHHHHHHH
T ss_pred             cceee--eeH-----HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHh--------ccChhHHHHHHHHHHHHHH
Confidence            99998  465     4455544322    123445778888888777765321        0123344555555555555


Q ss_pred             Hhc----CCCCCcccccCCceeEEe--c-----------CCCHH---HHHHhHhhccEEEcCCCeEEecC-CCCCChhHH
Q 015435          337 SAR----GTPGDWSHIIKQIGMFTF--T-----------GLNSE---QVAFMTKEYHIYMTSDGRISMAG-LSSKTVPHL  395 (407)
Q Consensus       337 ~~~----~~~~~~~~~~~~~~~~~~--~-----------~~~~~---~~~~~l~~~gi~~~~ggRis~~~-~~~e~i~~~  395 (407)
                      +++    +..  .. +...|.++.+  .           ..+.+   .+...+.++||.+.|.+++.++. ++++||+++
T Consensus       359 ~~l~~~~~~~--~~-vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~~~~~s~~~T~~dId~~  435 (454)
T 4ao9_A          359 NALCANEGVA--MQ-FTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRGFVVLSLPLTDADIDRY  435 (454)
T ss_dssp             HHHHHHHTBS--CE-EEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTCEEECCTTCCHHHHHHH
T ss_pred             HHHHhhCCCC--EE-EeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCCCEEEeCCCCHHHHHHH
Confidence            543    321  11 2223333322  1           11222   22233444899999999664432 588999999


Q ss_pred             HHHHHHHHHhh
Q 015435          396 TDAIHAAVTRM  406 (407)
Q Consensus       396 ~~~l~~~l~~~  406 (407)
                      +++|++++.++
T Consensus       436 l~al~~~l~~~  446 (454)
T 4ao9_A          436 VAAIGSFIGGH  446 (454)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.86  E-value=2.4e-20  Score=177.01  Aligned_cols=281  Identities=14%  Similarity=0.072  Sum_probs=177.0

Q ss_pred             ccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH-----hh
Q 015435           49 LVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA-----RH  123 (407)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~-----~~  123 (407)
                      .++++++++.+.+.  .   ..|.+..+..++++++++++ +.       +++++  ++|||+++.+++..+.     .+
T Consensus        13 ~~~~~~~a~~~~~~--~---~~~~~~~~~~~l~~~la~~~-~~-------~~~i~--~~sGt~a~~~al~~~~~~~~~~~   77 (390)
T 3b8x_A           13 WDDLEYKAIQSVLD--S---KMFTMGEYVKQYETQFAKTF-GS-------KYAVM--VSSGSTANLLMIAALFFTKKPRL   77 (390)
T ss_dssp             CCHHHHHHHHHHHH--H---TCCSSCHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHHHHTTSSSSCSC
T ss_pred             CCHHHHHHHHHHHH--c---CCCCCChHHHHHHHHHHHHH-CC-------CcEEE--ECCHHHHHHHHHHHHHhhhhcCC
Confidence            35566666656654  1   23666778999999999998 53       36777  8888899998842221     15


Q ss_pred             cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435          124 YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI  203 (407)
Q Consensus       124 ~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i  203 (407)
                      .+||+|+++.|+|..+...++..|.+++.++.+ ++++.+|++++++.+.  ++++++++.    |++|..   .++++|
T Consensus        78 ~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~--~~~~~v~~~----~~~g~~---~~~~~i  147 (390)
T 3b8x_A           78 KKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDID-INTLNIDIESLKEAVT--DSTKAILTV----NLLGNP---NNFDEI  147 (390)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHHHHCC--TTEEEEEEE----CGGGCC---CCHHHH
T ss_pred             CCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC-ccccCcCHHHHHHHhC--cCCeEEEEE----CCccCh---hhHHHH
Confidence            689999999999999999999999999999984 4457899999999987  456777763    244553   478999


Q ss_pred             HHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHh
Q 015435          204 RQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLK  283 (407)
Q Consensus       204 ~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~  283 (407)
                      +++|++||+++|+|++|+.......  ..     +....+-..+....+|.++ +| +.|++  +++++++.+++.....
T Consensus       148 ~~l~~~~~~~li~D~a~~~g~~~~~--~~-----~g~~~~~~~~s~~~~k~~~-~g-~gG~~--~~~~~~l~~~~~~~~~  216 (390)
T 3b8x_A          148 NKIIGGRDIILLEDNCESMGATFNN--KC-----AGTFGLMGTFSSFYSNHIA-TM-EGGCI--VTDDEEIYHILLCIRA  216 (390)
T ss_dssp             HHHHTTSCCEEEEECTTCTTCEETT--EE-----TTSSSSEEEEECCTTSSSC-SS-SCEEE--EESCHHHHHHHHHHTB
T ss_pred             HHHHHHcCCEEEEECcCcccCEECC--cc-----cccccceEEEEccCCCCCc-cC-CceEE--EeCCHHHHHHHHHHHh
Confidence            9999999999999999974322111  10     1000111122223355554 23 33777  5776565554443221


Q ss_pred             hh--hh-------------------------cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          284 LV--IR-------------------------PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL  336 (407)
Q Consensus       284 ~~--~~-------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  336 (407)
                      ..  ..                         ......+.+.+.++...+          +.+++..++.+++++++.+.|
T Consensus       217 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l----------~~l~~~~~~~~~~~~~l~~~L  286 (390)
T 3b8x_A          217 HGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL----------KKLPRFISVRRKNAEYFLDKF  286 (390)
T ss_dssp             TTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHh
Confidence            11  00                         000113333333333222          235567778888999999999


Q ss_pred             HhcCCCCCcccccC--CceeEE-e---c---CCCHHHHHHhHhhccEEEcC
Q 015435          337 SARGTPGDWSHIIK--QIGMFT-F---T---GLNSEQVAFMTKEYHIYMTS  378 (407)
Q Consensus       337 ~~~~~~~~~~~~~~--~~~~~~-~---~---~~~~~~~~~~l~~~gi~~~~  378 (407)
                      ++.+.   +.+..+  ..+++. +   .   +.+.+.+...|.++||.+.+
T Consensus       287 ~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~  334 (390)
T 3b8x_A          287 KDHPY---LDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRP  334 (390)
T ss_dssp             TTCSS---EEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBC
T ss_pred             cCCCC---cccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeee
Confidence            87632   444332  233322 1   2   24677777767778997764

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.85  E-value=2.1e-20  Score=180.61  Aligned_cols=280  Identities=16%  Similarity=0.221  Sum_probs=168.3

Q ss_pred             HHHHHHHhCCCCCCCCCCc---eEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH--------HHhhcCce-
Q 015435           82 KLSAKLILGADSPAIKDNR---VTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK--------VFTLAGLS-  149 (407)
Q Consensus        82 ~~~a~~~~~~~~~~~~~~~---i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~--------~~~~~G~~-  149 (407)
                      +.+++++ +..     .++   .++  ++|||+|+.++  +...+.+||+|+++++.|.++..        .+...|.. 
T Consensus       107 ~~~a~l~-g~~-----~~~~~~~v~--~~sGt~An~~a--l~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~  176 (490)
T 2a7v_A          107 RRALEAF-DLD-----PAQWGVNVQ--PYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFF  176 (490)
T ss_dssp             HHHHHHT-TCC-----TTTEEEECC--CSSHHHHHHHH--HHHHCCSCEECCC---------------------------
T ss_pred             HHHHHHc-CCC-----cccCceEEe--CCchHHHHHHH--HHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeE
Confidence            6667766 542     122   234  67899999988  45668899999999998865421        23345544 


Q ss_pred             -eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc-cccCCC
Q 015435          150 -VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ-GFASGS  227 (407)
Q Consensus       150 -~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~-~~~~~~  227 (407)
                       ++.+++ +++++.+|++++++.+.+. +++++++ +.++||+.  .   ++++|+++|++||++|++|+++. ++...+
T Consensus       177 ~~~~~~v-d~~~~~iD~d~le~~l~~~-~~klIi~-~~s~~~~~--~---dl~~i~~ia~~~g~~livD~Ah~~glv~~g  248 (490)
T 2a7v_A          177 ESMPYKL-NPKTGLIDYNQLALTARLF-RPRLIIA-GTSAYARL--I---DYARMREVCDEVKAHLLADMAHISGLVAAK  248 (490)
T ss_dssp             ----CCB-CTTTCSBCHHHHHHHHHHH-CCSEEEE-CCSSCCSC--C---CHHHHHHHHHHTTCEEEEECGGGHHHHHTT
T ss_pred             EEEeccc-ccccCCcCHHHHHHHHhhc-CCcEEEE-cCCCCCCc--c---cHHHHHHHHHHcCCEEEEccccccccccCC
Confidence             344444 3456789999999998632 3566655 78888863  2   58899999999999999999963 443332


Q ss_pred             CCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecCh--------------hhHHHHHHHHhhhhhcccC-C
Q 015435          228 LDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTE--------------DVASRVESQLKLVIRPMYS-S  292 (407)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~--------------~~~~~~~~~~~~~~~~~~~-~  292 (407)
                      ..+.  +   + .  ...+++.|++|.++  |.|.|++  +++++              ++.++    ++........ +
T Consensus       249 ~~~~--~---~-~--~aDiv~~S~hK~l~--Gp~GG~i--~~~~~~~~~~~~~~~~~~~~l~~~----i~~~~~~g~qgg  312 (490)
T 2a7v_A          249 VIPS--P---F-K--HADIVTTTTHKTLR--GARSGLI--FYRKGVKAVDPKTGREIPYTFEDR----INFAVFPSLQGG  312 (490)
T ss_dssp             SSCC--G---G-G--TCSEEEEESSGGGC--SCSCEEE--EEECSEEEEETTTEEEEECCCHHH----HHHHHTTTTCCS
T ss_pred             cCCC--C---C-C--CCCEEEECCcccCc--cccchhe--eeccchhcccccccchhhHHHHHH----HHHHhcccCCCC
Confidence            2111  1   1 1  23478899999874  6787888  56653              23333    3333222222 3


Q ss_pred             CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC-CceeEEec-----CCCHHHHH
Q 015435          293 PPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK-QIGMFTFT-----GLNSEQVA  366 (407)
Q Consensus       293 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~  366 (407)
                      ++...+.++..++...     .....++..+++.++++++.+.|++.|    +.+..+ ....+.|+     +++.+.+.
T Consensus       313 p~~~~iaAla~Al~~~-----~~~~~~~~~~~~~~na~~L~~~L~~~G----~~v~~~~t~t~lv~vdl~~~g~~~~~~~  383 (490)
T 2a7v_A          313 PHNHAIAAVAVALKQA-----CTPMFREYSLQVLKNARAMADALLERG----YSLVSGGTDNHLVLVDLRPKGLDGARAE  383 (490)
T ss_dssp             CCHHHHHHHHHHHHHH-----HSHHHHHHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEECTTTTCCHHHHH
T ss_pred             chHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHHcC----cEEecCCCCCeEEEEEeCCCCCCHHHHH
Confidence            3433333333333311     112346677888899999999999987    565432 23345555     34677788


Q ss_pred             HhHhhccEEEcC----C--------C-eEEec-----CCCCCChhHHHHHHHHHHH
Q 015435          367 FMTKEYHIYMTS----D--------G-RISMA-----GLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       367 ~~l~~~gi~~~~----g--------g-Ris~~-----~~~~e~i~~~~~~l~~~l~  404 (407)
                      ..|++.||.+.+    +        + ||+..     +.+++|++++++.|.++++
T Consensus       384 ~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~  439 (490)
T 2a7v_A          384 RVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             HHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence            888889999963    2        1 77542     1477999999999998875

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.85  E-value=5e-20  Score=181.08  Aligned_cols=323  Identities=13%  Similarity=0.065  Sum_probs=199.8

Q ss_pred             cchhHHHHHHHHhccccccccCCCCCCcHH----HHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh---
Q 015435           50 VLNVVRKAEQLLVNDQSRVKEYLPIVGLVD----FNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR---  122 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~----l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~---  122 (407)
                      |..+..+.+....  ......|....+..+    +++.+++++ +..     ++++++  |+|||+++..++..+..   
T Consensus       121 ~~~~~~~~l~~~~--n~~~~~~~~s~~~~~le~~~~~~la~l~-g~~-----~~~~~~--t~ggtea~~~al~~ar~~~~  190 (515)
T 2jis_A          121 PHALAGRIITESL--NTSQYTYEIAPVFVLMEEEVLRKLRALV-GWS-----SGDGIF--CPGGSISNMYAVNLARYQRY  190 (515)
T ss_dssp             HHHHHHHHHHHHH--CCCTTCTTTCHHHHHHHHHHHHHHHHHH-TCS-----SCEEEE--ESSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh--ccCCCchhhchHHHHHHHHHHHHHHHHh-CCC-----CCCeEE--cCCcHHHHHHHHHHHHHHHh
Confidence            4444444444443  122334554445434    455566665 432     478999  99999998888544321   


Q ss_pred             --hc-CCC------eEEecCCCCCChHHHHhhcCc---eeeEEEeecCCCCCcChhhHHHHHHcC---C-CCcEEEEecC
Q 015435          123 --HY-HQL------TIYIPQPTWGNHPKVFTLAGL---SVKTYRYYDPATRGLNFQGLLEDLRAA---P-SGAIVLLHAC  186 (407)
Q Consensus       123 --~~-~gd------~Vi~~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~---~-~~~~v~i~~~  186 (407)
                        +. +|+      .|+++.+.|+.+...++..|.   +++.+|.  +.++.+|+++|++++.+.   . ++.+|++ ++
T Consensus       191 ~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~-~~  267 (515)
T 2jis_A          191 PDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKA--DERGKMVPEDLERQIGMAEAEGAVPFLVSA-TS  267 (515)
T ss_dssp             TTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEE-EB
T ss_pred             hHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEec--CCCCcCCHHHHHHHHHHHHhCCCCcEEEEE-eC
Confidence              12 465      789999999999999998888   8999988  345789999999999731   1 2445555 89


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      |+||||.+.+   +++|+++|++||+++++|++|..+....... .+.   +.......+++.|++|.++.| .++|++ 
T Consensus       268 ~~n~tG~i~~---l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~-~~~---~~g~~~aD~v~~s~hK~l~~p-~g~G~l-  338 (515)
T 2jis_A          268 GTTVLGAFDP---LEAIADVCQRHGLWLHVDAAWGGSVLLSQTH-RHL---LDGIQRADSVAWNPHKLLAAG-LQCSAL-  338 (515)
T ss_dssp             SCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTT-GGG---GTTGGGCSEEEECTTSTTCCC-SCCEEE-
T ss_pred             CCCCCCCccC---HHHHHHHHHHcCCeEEEehhhhhHHHhChhh-Hhh---cCCCccCCEEEECcccccCCC-CCeeEE-
Confidence            9999999754   7888899999999999999998777532110 011   111113357888999998744 578998 


Q ss_pred             EeecCh-hhHHHHH----HHHhhhhh-------cccC------CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435          267 IVCKTE-DVASRVE----SQLKLVIR-------PMYS------SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       267 ~v~~~~-~~~~~~~----~~~~~~~~-------~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  328 (407)
                       +++++ ++.++..    ..+.....       ....      ....+.+.++...+.        ...+++..++..++
T Consensus       339 -~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg--------~~g~~~~~~~~~~~  409 (515)
T 2jis_A          339 -LLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG--------DQGLERRIDQAFVL  409 (515)
T ss_dssp             -EESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred             -EEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHHHH
Confidence             67766 4444321    11111000       0000      011233333433332        13466777888899


Q ss_pred             HHHHHHHHHhcCCCCCccccc-CCceeEEecCC--------C-HH----------HHHHhHhhccEEE-c----CC--C-
Q 015435          329 RQQLFDALSARGTPGDWSHII-KQIGMFTFTGL--------N-SE----------QVAFMTKEYHIYM-T----SD--G-  380 (407)
Q Consensus       329 ~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~--------~-~~----------~~~~~l~~~gi~~-~----~g--g-  380 (407)
                      ++++.+.|++.+.   +++.. +..+.+.|...        + .+          .+...+.+.|+.+ .    ++  + 
T Consensus       410 a~~l~~~L~~~~g---~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~  486 (515)
T 2jis_A          410 ARYLVEEMKKREG---FELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNF  486 (515)
T ss_dssp             HHHHHHHHHTSTT---EEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEE
T ss_pred             HHHHHHHHhcCCC---EEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEE
Confidence            9999999998732   65543 34455555211        1 11          1333344467543 2    22  2 


Q ss_pred             -eEEec-C-CCCCChhHHHHHHHHHHHhh
Q 015435          381 -RISMA-G-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 -Ris~~-~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                       |++++ . .+++++++++++|+++++++
T Consensus       487 lRis~~~~~~t~edid~~~~~l~~~~~~~  515 (515)
T 2jis_A          487 FRVVVANSALTCADMDFLLNELERLGQDL  515 (515)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence             99984 2 47799999999999987653

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.85  E-value=2.8e-20  Score=187.62  Aligned_cols=302  Identities=12%  Similarity=0.025  Sum_probs=187.7

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH-HhhcCceee
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV-FTLAGLSVK  151 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~-~~~~G~~~~  151 (407)
                      +..-+.++++.+|+++ +..      ..+++  ++|+++++.+++  ...+.+||.|+++.++|.++... +...|++++
T Consensus       171 ~~~~i~e~e~~lA~~~-gae------~~i~v--~nGtt~an~~ai--~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v  239 (730)
T 1c4k_A          171 HEGPAVAAEKHAARVY-NAD------KTYFV--LGGSSNANNTVT--SALVSNGDLVLFDRNNHKSVYNSALAMAGGRPV  239 (730)
T ss_dssp             TBTHHHHHHHHHHHHT-TCS------EEEEE--SSHHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEE
T ss_pred             ChHHHHHHHHHHHHHH-CCC------cEEEE--CCHHHHHHHHHH--HHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEE
Confidence            3445788999999988 541      44666  888889999984  55588999999999999988888 889999999


Q ss_pred             EEEeecCCCC----CcChhhH-----HHHHHcC-CC---C----cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCcee
Q 015435          152 TYRYYDPATR----GLNFQGL-----LEDLRAA-PS---G----AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP  214 (407)
Q Consensus       152 ~v~~~~~~~~----~~d~~~l-----~~~i~~~-~~---~----~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l  214 (407)
                      .++... +.+    .+|++++     ++++.+. +.   +    +++++ ++| ||||.+.+   +++|+++|++||+++
T Consensus       240 ~v~~~~-~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv-~~p-n~~G~v~d---l~~I~~la~~~g~~l  313 (730)
T 1c4k_A          240 YLQTNR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVI-QLG-TYDGTIYN---AHEVVKRIGHLCDYI  313 (730)
T ss_dssp             EECEEE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEE-ESB-CTTSEEEC---HHHHHHHHGGGBSEE
T ss_pred             EEeCCc-cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEE-ECC-CCCCeecC---HHHHHHHHHHcCCeE
Confidence            887742 223    3788988     8888632 11   3    56666 677 68999764   788899999999999


Q ss_pred             eeccccccc-cCCCCCchhHHHH--HHHHcCCcEEEEEecCccccccCCCcceeEEeecChhh--------HHHHHHHHh
Q 015435          215 FFDSAYQGF-ASGSLDADAQSVR--MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV--------ASRVESQLK  283 (407)
Q Consensus       215 i~D~~y~~~-~~~~~~~~~~~~~--~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~--------~~~~~~~~~  283 (407)
                      ++|++|... .+.+.-+...++.  .+.....+++++.|+||.+  +|++.|+++ +++++.+        ..++.....
T Consensus       314 ivDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I-~v~~~~l~g~~~~i~~~~~~~~~~  390 (730)
T 1c4k_A          314 EFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQI-HKKDSHIKGQLRYCDHKHFNNSFN  390 (730)
T ss_dssp             EEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEE-EEECGGGTTSTTCCCHHHHHHHHH
T ss_pred             EEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEE-EecchhhcCcccccCHHHHHHHHH
Confidence            999998643 3321000000110  0011123569999999975  567666552 3444432        122222222


Q ss_pred             hhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcccccC------------
Q 015435          284 LVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWSHIIK------------  350 (407)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~------------  350 (407)
                      .   ....+++...+.++..+++...     .+...+..+++.++.+++++.|++ +..   +.+..+            
T Consensus       391 ~---~~stsp~~~~iaal~aA~~~l~-----~~~g~~~~~~~~~~a~~lr~~L~~~i~g---~~v~~p~~~~~~~~~~~~  459 (730)
T 1c4k_A          391 L---FMSTSPFYPMYAALDVNAAMQE-----GEAGRKLWHDLLITTIEARKKLIKAGSM---FRPFVPPVVNGKKWEDGD  459 (730)
T ss_dssp             H---HSCSSCCHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHTTCS---SEESSCSEETTEEGGGSC
T ss_pred             H---hCCCCCcHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHhhhCCC---eEEccccccccccccccc
Confidence            1   1223455444443333332111     012334556677777788888877 321   222111            


Q ss_pred             --------------------------Ccee--------EEec------------CCCHHHHHHhHhhccEEEcCCC----
Q 015435          351 --------------------------QIGM--------FTFT------------GLNSEQVAFMTKEYHIYMTSDG----  380 (407)
Q Consensus       351 --------------------------~~~~--------~~~~------------~~~~~~~~~~l~~~gi~~~~gg----  380 (407)
                                                .+.+        +...            +++...+.+.|.++||.+.+.+    
T Consensus       460 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~i  539 (730)
T 1c4k_A          460 TEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSI  539 (730)
T ss_dssp             HHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEE
T ss_pred             cccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeE
Confidence                                      1101        1111            2456667766766799887754    


Q ss_pred             eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          381 RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       381 Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                      |++++. .+++++++++++|+++.+.
T Consensus       540 r~~~s~g~t~e~i~~Ll~aL~~i~~~  565 (730)
T 1c4k_A          540 LFLMTPAETPAKMNNLITQLLQLQRL  565 (730)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            665543 4778999999999988754

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.85  E-value=1.1e-20  Score=184.08  Aligned_cols=329  Identities=10%  Similarity=0.021  Sum_probs=205.6

Q ss_pred             chhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCC--------CCceEEeecCCcccHHHHHHHHHHh
Q 015435           51 LNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIK--------DNRVTTVQCLSGTGSLRVGAEFLAR  122 (407)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~--------~~~i~~~~t~g~t~a~~~~~~~~~~  122 (407)
                      +..+.+++.... + .....|....+..++++.+++++....+.+..        ....++  |+|||+++..++...+.
T Consensus        92 ~~~~~~~~~~~~-n-~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~--~~ggt~an~~al~~ar~  167 (481)
T 4e1o_A           92 PSLLGDMLADAI-N-CLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVL--QSTVSESTLIALLAARK  167 (481)
T ss_dssp             HHHHHHHHHHHH-C-CCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEE--ESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-C-cccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEE--eCchHHHHHHHHHHHHH
Confidence            344444544444 2 23456777788889999988887333222211        135688  99999999888543321


Q ss_pred             h-----------------cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC---CCcEEE
Q 015435          123 H-----------------YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP---SGAIVL  182 (407)
Q Consensus       123 ~-----------------~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~---~~~~v~  182 (407)
                      .                 .+++.|+++.++|..+.+.+...|.+++.+|.  ++++.+|+++|++++.+..   ..+.++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~--~~~~~~d~~~Le~~i~~~~~~g~~~~~v  245 (481)
T 4e1o_A          168 NKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPV--DDNFSLRGEALQKAIEEDKQRGLVPVFV  245 (481)
T ss_dssp             HHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEc--CCCCcCCHHHHHHHHHHHHhCCCCcEEE
Confidence            1                 25678999999999999999999999999998  3567899999999997421   124445


Q ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc
Q 015435          183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV  262 (407)
Q Consensus       183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  262 (407)
                      +.+.++|+||.+   +++++|+++|++||+++++|++|........  .....  .........+..+++|.++.| ..+
T Consensus       246 v~~~~~t~~G~i---d~l~~I~~la~~~~~~lhvDaA~g~~~~~~~--~~~~~--~~gi~~aDsi~~~~hK~l~~p-~g~  317 (481)
T 4e1o_A          246 CATLGTTGVCAF---DCLSELGPICAREGLWLHIDAAYAGTAFLCP--EFRGF--LKGIEYADSFTFNPSKWMMVH-FDC  317 (481)
T ss_dssp             EEEBSCTTTCCB---CCHHHHHHHHHHHTCEEEEECTTGGGGGGSG--GGGGG--GTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred             EEecCCCCCcCc---CCHHHHHHHHHHcCCeEEeehhhHHHHHhCh--hhHHH--hcCcccCCEEEEChHHhcCCC-Cce
Confidence            557889999985   5699999999999999999999987643211  11110  001012245667999998855 456


Q ss_pred             ceeEEeecChhhHHHHHHHHhhhhhc-----------ccC--C--CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 015435          263 GALSIVCKTEDVASRVESQLKLVIRP-----------MYS--S--PPIHGASIVATILKDSTMYKEWTLELKAMADRIIS  327 (407)
Q Consensus       263 G~~~~v~~~~~~~~~~~~~~~~~~~~-----------~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  327 (407)
                      |++  ++.+++...+.......+...           +..  +  ...+.+.++...+.        .+.++++.++..+
T Consensus       318 g~l--~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g--------~~g~~~~~~~~~~  387 (481)
T 4e1o_A          318 TGF--WVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG--------VKNLQAHVRHGTE  387 (481)
T ss_dssp             EEE--EESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred             EEE--EEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH--------HHHHHHHHHHHHH
Confidence            777  577654221110000001000           000  0  12333444444332        1446778888999


Q ss_pred             HHHHHHHHHHhcCCCCCcccccC-CceeEEec--CC---CHHHHHHhHhhccEEEcCC---C----eEEecC--CCCCCh
Q 015435          328 MRQQLFDALSARGTPGDWSHIIK-QIGMFTFT--GL---NSEQVAFMTKEYHIYMTSD---G----RISMAG--LSSKTV  392 (407)
Q Consensus       328 ~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~--~~---~~~~~~~~l~~~gi~~~~g---g----Ris~~~--~~~e~i  392 (407)
                      +++++.+.|++.+.   +++..+ ..+++.|.  +.   +.+...++.++..+.+.++   |    |+++.+  .+++++
T Consensus       388 ~a~~l~~~L~~~~g---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di  464 (481)
T 4e1o_A          388 MAKYFESLVRNDPS---FEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDI  464 (481)
T ss_dssp             HHHHHHHHHHTCTT---EECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHH
T ss_pred             HHHHHHHHHhcCCC---eEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHH
Confidence            99999999998742   666543 34443332  22   1223445555433444442   3    888764  256899


Q ss_pred             hHHHHHHHHHHHhh
Q 015435          393 PHLTDAIHAAVTRM  406 (407)
Q Consensus       393 ~~~~~~l~~~l~~~  406 (407)
                      ++++++|+++++++
T Consensus       465 ~~~~~~i~~~~~~l  478 (481)
T 4e1o_A          465 LRDWNLIRDAATLI  478 (481)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988753

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.84  E-value=2.2e-20  Score=181.54  Aligned_cols=328  Identities=12%  Similarity=0.030  Sum_probs=203.2

Q ss_pred             chhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCC-------CCceEEeecCCcccHHHHHHHHHHhh
Q 015435           51 LNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIK-------DNRVTTVQCLSGTGSLRVGAEFLARH  123 (407)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~-------~~~i~~~~t~g~t~a~~~~~~~~~~~  123 (407)
                      +..+.+++.... +. ....|....+..++++.+++++....+.+..       ....++  |+|||+++..++...+..
T Consensus        87 ~~~~~~~l~~~~-n~-~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~--t~ggt~anl~al~~ar~~  162 (475)
T 3k40_A           87 PAIVADMLSGAI-AC-IGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVI--QGTASESTLVALLGAKAK  162 (475)
T ss_dssp             HHHHHHHHHHHH-CC-CSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEE--ESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-Cc-cccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEE--cCchHHHHHHHHHHHHHH
Confidence            344444444444 22 3455777778888999888887443333211       135888  999999988875333211


Q ss_pred             -----------------cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC---CCcEEEE
Q 015435          124 -----------------YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP---SGAIVLL  183 (407)
Q Consensus       124 -----------------~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~---~~~~v~i  183 (407)
                                       .+++.|+++.++|.++.+.+...|.+++.+|++  .++ +|+++|++++.+..   ..+.+++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~  239 (475)
T 3k40_A          163 KLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAV  239 (475)
T ss_dssp             HHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEE
Confidence                             134689999999999999999999999999983  346 99999999997421   1244455


Q ss_pred             ecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435          184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG  263 (407)
Q Consensus       184 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  263 (407)
                      .+.++|+||.+   +++++|+++|++||+++++|++|........  .....  +........+..+++|.++.| ..+|
T Consensus       240 ~~~~~t~~G~~---~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~--~~~~~--~~gi~~~Ds~~~~~hK~l~~p-~g~g  311 (475)
T 3k40_A          240 VTLGTTNSCAF---DYLDECGPVGNKHNLWIHVDAAYAGSAFICP--EYRHL--MKGIESADSFNFNPHKWMLVN-FDCS  311 (475)
T ss_dssp             EEBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGSG--GGGGG--GTTGGGCSEEEECHHHHSSCC-SSCE
T ss_pred             EEecCCCCcCc---CCHHHHHHHHHHhCCeEEEeHHhHHHHHhCH--hhHHH--hcCcccCCEEEECchhccCCC-CceE
Confidence            57889999995   5688999999999999999999976543211  11100  001112346678999987744 5678


Q ss_pred             eeEEeecChhhHHHHHHHHhhhhhc-----------ccCCC----ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435          264 ALSIVCKTEDVASRVESQLKLVIRP-----------MYSSP----PIHGASIVATILKDSTMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       264 ~~~~v~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  328 (407)
                      ++  ++++++...+.......+...           +....    ..+.+.++...+.        .+.+++..++..++
T Consensus       312 ~l--~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g--------~~g~~~~~~~~~~~  381 (475)
T 3k40_A          312 AM--WLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG--------VENLQAHIRRHCNF  381 (475)
T ss_dssp             EE--EESSGGGC---------------------------CCCGGGTHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred             EE--EEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHHHH
Confidence            88  577665422111111011000           00001    1222333333332        14467788889999


Q ss_pred             HHHHHHHHHhcCCCCCccccc-CCceeEEec--CC---CHHHHHHhHhhccEEEcCC---C----eEEecC--CCCCChh
Q 015435          329 RQQLFDALSARGTPGDWSHII-KQIGMFTFT--GL---NSEQVAFMTKEYHIYMTSD---G----RISMAG--LSSKTVP  393 (407)
Q Consensus       329 ~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~--~~---~~~~~~~~l~~~gi~~~~g---g----Ris~~~--~~~e~i~  393 (407)
                      ++++.+.|++.+.   +++.. +..+++.|.  +.   +.+...++.++.++.+.++   |    |+++.+  .++++++
T Consensus       382 a~~l~~~L~~~~g---~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~  458 (475)
T 3k40_A          382 AKQFGDLCVADSR---FELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDME  458 (475)
T ss_dssp             HHHHHHHHHHSTT---EEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHH
T ss_pred             HHHHHHHHhcCCC---EEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHH
Confidence            9999999998743   66654 344444432  22   1233445555444454432   3    888764  3668999


Q ss_pred             HHHHHHHHHHHhh
Q 015435          394 HLTDAIHAAVTRM  406 (407)
Q Consensus       394 ~~~~~l~~~l~~~  406 (407)
                      +++++|+++++++
T Consensus       459 ~~~~~i~~~~~~~  471 (475)
T 3k40_A          459 YSWKEVSAAADEM  471 (475)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.84  E-value=5.5e-20  Score=177.27  Aligned_cols=280  Identities=15%  Similarity=0.110  Sum_probs=170.6

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCceeeE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGLSVKT  152 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~~~~~  152 (407)
                      ..++++.+++++ +.     +++++++  ++|+|.+.+.+.... .+.+||+|+++.++|+.+...++    ..|++++.
T Consensus       110 ~~~~~~~la~~~-g~-----~~~~i~~--~~g~taa~ea~~~a~-~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~  180 (438)
T 1wyu_A          110 TFEYQTMIAELA-GL-----EIANASM--YDGATALAEGVLLAL-RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLT  180 (438)
T ss_dssp             HHHHHHHHHHHH-TS-----SEECSCB--SSHHHHHHHHHHHHH-HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHh-CC-----CccceEE--eCcHHHHHHHHHHHH-hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEE
Confidence            457777788877 43     2367888  999995555553222 35689999999999998886664    48999999


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      ++.  + ++.+|+++    ++  ++++++++ ++| ||||.+.   ++++|+++|+++|+++++|..-..++.-..  + 
T Consensus       181 v~~--~-~~~~d~~~----i~--~~t~~v~i-~~p-n~tG~~~---~l~~i~~la~~~g~~vivd~d~~a~g~~~~--~-  243 (438)
T 1wyu_A          181 LPL--E-GGRTPLPE----VG--EEVGAVVV-QNP-NFLGALE---DLGPFAEAAHGAGALFVAVADPLSLGVLKP--P-  243 (438)
T ss_dssp             ECC--B-TTBCCCCC----CC--TTEEEEEE-ESS-CTTSBCC---CHHHHHHHHHHTTCEEEEECCTTGGGTBCC--H-
T ss_pred             EcC--c-CCccCHHH----hC--CCeEEEEE-ECC-CCCeEEe---cHHHHHHHHHHcCCEEEEEechhhccCcCC--C-
Confidence            986  2 34677776    44  45677777 778 9999987   588888889999999995532111211111  1 


Q ss_pred             HHHHHHHHcCCcEEEEEecCccc----cccCCCcceeEEeecChhhHHHHHHHH--------------------hhhhh-
Q 015435          233 QSVRMFVADGGECLVAQSYAKNM----GLYGERVGALSIVCKTEDVASRVESQL--------------------KLVIR-  287 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~----~~~G~r~G~~~~v~~~~~~~~~~~~~~--------------------~~~~~-  287 (407)
                         .   ..+ ..++++| +|.|    ++.|.|+|++  +++ +++.+.+...+                    ....+ 
T Consensus       244 ---~---~~g-~D~~~~s-~kk~~~~~~~~Gp~~G~l--~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~  312 (438)
T 1wyu_A          244 ---G---AYG-ADIAVGD-GQSLGLPMGFGGPHFGFL--ATK-KAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR  312 (438)
T ss_dssp             ---H---HHT-CSEEEEE-CTTTTCCCGGGCSCCEEE--EEC-GGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred             ---c---cCC-CCEEEEC-CcccCCCccCCCCCeeEE--EEc-HHHHHhCCCceeccccccCCCcceeeeccccccccch
Confidence               1   112 2355555 5654    4567799998  455 44333221000                    00000 


Q ss_pred             -cccCCC---ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEE---e-c
Q 015435          288 -PMYSSP---PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFT---F-T  358 (407)
Q Consensus       288 -~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~---~-~  358 (407)
                       ..+.+.   ..+....+...+....     .+.+++.+++++++++++.+.|+++ |    +++..+.. +|.   + .
T Consensus       313 ~~~t~~~~~~~~~~a~~aa~~l~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~~-~~~~~~~~~  382 (438)
T 1wyu_A          313 AKAKSNITTNAQLTALMGAMYLAALG-----PEGLREVALKSVEMAHKLHALLLEVPG----VRPFTPKP-FFNEFALAL  382 (438)
T ss_dssp             GGSSCCCCSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTSTT----CEECSCSS-BCSEEEEEC
T ss_pred             hcccCCccchHHHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHhcCCC----eEECCCCC-eEEEEEEeC
Confidence             111111   1111211111122111     1346778888999999999999987 5    56554422 222   2 1


Q ss_pred             CCCHHHHHHhHhhccEEE--cCC-----C--eEEecC-CCCCChhHHHHHHHHHH
Q 015435          359 GLNSEQVAFMTKEYHIYM--TSD-----G--RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       359 ~~~~~~~~~~l~~~gi~~--~~g-----g--Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      +.+...+.+.|.++||.+  .++     +  ||++.. .+++++++++++|++++
T Consensus       383 ~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          383 PKDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             SSCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence            345555555555579988  443     2  888874 37789999999998764

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.82  E-value=2.4e-19  Score=182.47  Aligned_cols=176  Identities=15%  Similarity=0.146  Sum_probs=123.6

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEe
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRY  155 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~  155 (407)
                      -+.++++.+++++ +..      +.+++  ++|+++++.+++  ...+.+||.|+++.|+|.++...+...|++++.++.
T Consensus       206 ~v~~~ee~la~l~-G~d------~~i~~--~~Gtt~a~~~~i--~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~  274 (755)
T 2vyc_A          206 AFGESEKYAARVF-GAD------RSWSV--VVGTSGSNRTIM--QACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVP  274 (755)
T ss_dssp             HHHHHHHHHHHHH-TCS------EEEEE--SSHHHHHHHHHH--HHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECC
T ss_pred             HHHHHHHHHHHHh-CCC------ceEEE--CCcHHHHHHHHH--HHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeC
Confidence            3567777788777 541      45667  888899999984  555889999999999999999989999999999987


Q ss_pred             ecCCCCC----c-----ChhhHHHHHHcCCCCc--------EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecc
Q 015435          156 YDPATRG----L-----NFQGLLEDLRAAPSGA--------IVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDS  218 (407)
Q Consensus       156 ~~~~~~~----~-----d~~~l~~~i~~~~~~~--------~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~  218 (407)
                      . .+.++    +     |++++++++.+.+.++        ++++ ++| ||||.+.+   +++|+++|++||+++++|+
T Consensus       275 ~-~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil-~~p-n~~G~v~d---l~~I~~ia~~~~~~livDe  348 (755)
T 2vyc_A          275 S-RNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVV-TNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDE  348 (755)
T ss_dssp             C-BCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEE-ESS-CTTSEEEC---HHHHHHHHTTTCSEEEEEC
T ss_pred             C-CCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEE-ECC-CCCceecC---HHHHHHHHHHcCCEEEEEC
Confidence            3 22233    4     9999999997543333        6666 677 79999764   7888899999999999999


Q ss_pred             cccccc-CCCCCchhHHHHHH--HH-cCCcEEEEEecCccccccCCCcceeEEeecCh
Q 015435          219 AYQGFA-SGSLDADAQSVRMF--VA-DGGECLVAQSYAKNMGLYGERVGALSIVCKTE  272 (407)
Q Consensus       219 ~y~~~~-~~~~~~~~~~~~~~--~~-~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~  272 (407)
                      +|.... +.+.-.+..++ ..  .+ ...+++++.|+||.+  +|++.|.++ +++++
T Consensus       349 A~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i-~~~~~  402 (755)
T 2vyc_A          349 AWYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLL--NALSQASYI-HVREG  402 (755)
T ss_dssp             TTCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSS--SCCTTCEEE-EEECC
T ss_pred             cCchhcccCcccCCcchh-cCCcCCccCCCeEEEECccccc--cCcCCeeee-eecCc
Confidence            987532 22100000111 00  11 134667999999985  567644442 45443

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.82  E-value=3.7e-19  Score=170.57  Aligned_cols=346  Identities=12%  Similarity=0.078  Sum_probs=209.8

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc-cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK-EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++++++++.+++. ...+.. .+.+.....++.+.+++...+ ..    .+.+++  
T Consensus        60 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~-~~~~~~~~~~~~~~~~~lae~L~~~~p~-~~----~~~v~f--  130 (456)
T 4atq_A           60 DVDGNSFIDLGSGIAVTSVG-ASDPAVVAAVQEAAA-HFTHTCFMVTPYEGYVAVTEQLNRLTPG-DH----AKRTVL--  130 (456)
T ss_dssp             ETTSCEEEESSHHHHTCTTC-TTCHHHHHHHHHHHH-HCSCCTTTTSCCHHHHHHHHHHHHHSSC-SS----CEEEEE--
T ss_pred             eCCCCEEEEccccHHHHhcC-CCCHHHHHHHHHHHh-hccCcccCccCcHHHHHHHHHHHHhCCC-CC----CcEEEE--
Confidence            34678999999997666677 667788888888776 111111 122333445667777776622 11    267889  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhh-cC-------------ceeeEEEeecCC----CCCcChhh
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTL-AG-------------LSVKTYRYYDPA----TRGLNFQG  167 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~-~G-------------~~~~~v~~~~~~----~~~~d~~~  167 (407)
                      ++||++|++.++++.+......+|+...-+|++....... .|             -.+..+|...+.    ....+.+.
T Consensus       131 ~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~  210 (456)
T 4atq_A          131 FNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEA  210 (456)
T ss_dssp             ESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHH
T ss_pred             eCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHH
Confidence            9999999999999988777778999999999877543321 11             123344432111    11122333


Q ss_pred             HHHHHHc-----CC-CCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435          168 LLEDLRA-----AP-SGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA  240 (407)
Q Consensus       168 l~~~i~~-----~~-~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~  240 (407)
                      +++.+..     .+ +..++++-+ -+.-.|.+ .+++.+++|.++|++||++||+||+..+|+..+.   .+....+.-
T Consensus       211 ~~~~~~~~e~~~~~~~iAAvivEP-iqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~---~~a~e~~gv  286 (456)
T 4atq_A          211 AKRAITMIEKQIGGDQVAAIIIEP-IQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE---WFAVDHEGV  286 (456)
T ss_dssp             HHHHHHHHHHHTCGGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGTTC
T ss_pred             HHHHHHHHHHhhcCCceEEEEecc-ccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccc---cccccccCC
Confidence            3333221     12 335555533 34445654 6788999999999999999999999999887652   222222211


Q ss_pred             cCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHH
Q 015435          241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKA  320 (407)
Q Consensus       241 ~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  320 (407)
                       ..+++   +++|.+| .|+++|.+  ++.     +++.+.+.......+++.+++++.++.+.|+-..        -+.
T Consensus       287 -~PDiv---t~gK~lg-gg~P~~av--~~~-----~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~--------~~~  346 (456)
T 4atq_A          287 -VPDII---TMAKGIA-GGLPLSAI--TGR-----ADLLDAVHPGGLGGTYGGNPVACAAALAAIDTME--------QHD  346 (456)
T ss_dssp             -CCSEE---EECGGGG-TTSSCEEE--EEE-----HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHH--------HTT
T ss_pred             -CCchh---hhhhccc-CcCCceee--Eec-----HHHHhcccccCCCCCCCCChHHHHhhHHHHHHHh--------hcc
Confidence             12333   3689988 78999998  566     5555555444445566888999998888876321        113


Q ss_pred             HHHHHHHHHHHHHHHHHhcC--CCC----CcccccCCceeEEe--c-CC----CH---HHHHHhHhhccEEEcCCC----
Q 015435          321 MADRIISMRQQLFDALSARG--TPG----DWSHIIKQIGMFTF--T-GL----NS---EQVAFMTKEYHIYMTSDG----  380 (407)
Q Consensus       321 ~~~~~~~~~~~l~~~l~~~~--~~~----~~~~~~~~~~~~~~--~-~~----~~---~~~~~~l~~~gi~~~~gg----  380 (407)
                      +.++.++..+++.+.|+++.  .+.    .+.-+...|.++.+  . +-    +.   ..+...+.++|+.+.++|    
T Consensus       347 l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~  426 (456)
T 4atq_A          347 LNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCGTYGN  426 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence            34455555666666555431  000    01112223333322  1 11    22   223444455899987654    


Q ss_pred             --eEEec-CCCCCChhHHHHHHHHHHHh
Q 015435          381 --RISMA-GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       381 --Ris~~-~~~~e~i~~~~~~l~~~l~~  405 (407)
                        ||... .++++++++++++|.++++.
T Consensus       427 ~irl~PpL~it~~~id~~l~~l~~al~a  454 (456)
T 4atq_A          427 VIRLLPPLVISDELLIDGLEVLAAAIKA  454 (456)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence              66543 25889999999999999975

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.79  E-value=4.9e-18  Score=163.40  Aligned_cols=351  Identities=12%  Similarity=0.091  Sum_probs=208.7

Q ss_pred             cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCC--CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL--PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~--~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ..++++||+..|....+.| ..++++++++.+++. .-...+.+.  +..-..+|.+.+++.. ..     ..+.+++  
T Consensus        64 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~-~l~~~~~~~~~~~~~~~~lAe~L~~~~-p~-----~~~~v~f--  133 (473)
T 4e3q_A           64 VNGRRYLDANSGLWNMVAG-FDHKGLIDAAKAQYE-RFPGYHAFFGRMSDQTVMLSEKLVEVS-PF-----DSGRVFY--  133 (473)
T ss_dssp             TTCCEEEETTTTTTTCTTC-SCCHHHHHHHHHHHH-HCCCCCCCTTEEEHHHHHHHHHHHHHS-SC-----SSCEEEE--
T ss_pred             CCCCEEEEcccCHHHhhcc-CCCHHHHHHHHHHHH-hcccccccccccCHHHHHHHHHHHhhC-CC-----CccEEEE--
Confidence            4578999999987766667 667788888888886 111112221  1112334566666655 21     1268999  


Q ss_pred             cCCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHHhh-cCc-----------eeeEEEeec----CCCCCc
Q 015435          106 CLSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVFTL-AGL-----------SVKTYRYYD----PATRGL  163 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~~~-~G~-----------~~~~v~~~~----~~~~~~  163 (407)
                      ++||++|++.++++.+...     ++ .+|+...-+|++....... .|.           ....++..+    ......
T Consensus       134 ~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  213 (473)
T 4e3q_A          134 TNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGET  213 (473)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCC
T ss_pred             eCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccch
Confidence            9999999999998876541     23 4688888888875443321 111           122222210    000000


Q ss_pred             -------ChhhHHHHHHcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435          164 -------NFQGLLEDLRAA-PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS  234 (407)
Q Consensus       164 -------d~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~  234 (407)
                             ..+++++.+.+. ++..+.+|...-+.-.|++ .+++.+++|.++|++||++||+||+..+|+..+   ..+.
T Consensus       214 ~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG---~~fa  290 (473)
T 4e3q_A          214 EEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG---NTWG  290 (473)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTS---SSCH
T ss_pred             hhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCccc---chhH
Confidence                   123455555422 2333334424444445665 678899999999999999999999999998765   3344


Q ss_pred             HHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh---hhcccCCCChhHHHHHHHHhcChhhH
Q 015435          235 VRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV---IRPMYSSPPIHGASIVATILKDSTMY  311 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~  311 (407)
                      ...+.- ..+++   +++|.++..++++|.+  ++. +++.+.+.......   ....+++.+++++.++.+.|+-..  
T Consensus       291 ~e~~gv-~PDi~---t~~K~l~gG~~Pl~av--~~~-~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~--  361 (473)
T 4e3q_A          291 CVTYDF-TPDAI---ISSKNLTAGFFPMGAV--ILG-PELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVM--  361 (473)
T ss_dssp             HHHTTC-CCSEE---EECGGGGTTSSCCEEE--EEC-HHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHH--
T ss_pred             HHhcCC-CCChH---HhcccccCCCCCcccc--ccc-HHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhc--
Confidence            433322 23333   3789998444899998  455 55555544332221   223455778888888888776321  


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec---------CCC-----HHHHHHhHhhccEEEc
Q 015435          312 KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT---------GLN-----SEQVAFMTKEYHIYMT  377 (407)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~l~~~gi~~~  377 (407)
                            -+.+.++.+++.++|.+.|+++.....+.-+...|.++.+-         ..+     .+.+...+.++|+.+.
T Consensus       362 ------~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~  435 (473)
T 4e3q_A          362 ------NEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICR  435 (473)
T ss_dssp             ------HSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECE
T ss_pred             ------cccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEE
Confidence                  12344566677777887777653211122223333333321         111     2334455556899999


Q ss_pred             CCC---eEEec-CCCCCChhHHHHHHHHHHHhh
Q 015435          378 SDG---RISMA-GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       378 ~gg---Ris~~-~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.|   ||+.. .++++++++++++|.++++++
T Consensus       436 ~~g~~i~l~PPL~it~~eid~~~~~l~~al~~v  468 (473)
T 4e3q_A          436 PLGQSVVLCPPFILTEAQMDEMFDKLEKALDKV  468 (473)
T ss_dssp             EETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            877   55432 258899999999999988763

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.76  E-value=2.5e-18  Score=171.96  Aligned_cols=297  Identities=12%  Similarity=0.082  Sum_probs=178.8

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeE
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKT  152 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~  152 (407)
                      |..-+.++++.+|+++ +..      ..+++  ++|+++++.++  +...+.+||.|+++.++|.++...+...|++++.
T Consensus       193 ~~g~i~eaE~~lA~~f-Ga~------~a~~v--~nGts~An~~a--i~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~  261 (715)
T 3n75_A          193 HSGPHKEAEQYIARVF-NAD------RSYMV--TNGTSTANKIV--GMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIY  261 (715)
T ss_dssp             TBTHHHHHHHHHHHHH-TCS------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEE
T ss_pred             CcHHHHHHHHHHHHHh-CCC------CceEE--CcHHHHHHHHH--HHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEE
Confidence            4444788899999988 541      34555  77778998887  4556889999999999999999999999999999


Q ss_pred             EEeecCCCCCc---------ChhhHHHHHHcCCCCc---EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc
Q 015435          153 YRYYDPATRGL---------NFQGLLEDLRAAPSGA---IVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY  220 (407)
Q Consensus       153 v~~~~~~~~~~---------d~~~l~~~i~~~~~~~---~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y  220 (407)
                      ++.. .+.+++         |++.+++++.+.++++   ++++ ++| ||+|.+++   +++|+++|++++  +++||||
T Consensus       262 v~~~-~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~viv-t~p-n~~G~v~d---l~~I~ela~~~~--livDEAH  333 (715)
T 3n75_A          262 FRPT-RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVI-TNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAW  333 (715)
T ss_dssp             ECCC-BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEE-ESS-CTTSEEEC---HHHHHHHCCCSE--EEEECTT
T ss_pred             Eecc-ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEE-ECC-CCCCccCC---HHHHHHHhCcCc--EEEcccc
Confidence            9873 233443         8999999998654333   5666 777 99999886   566666677663  7899999


Q ss_pred             cccc-CCCCCchhHHHHHHHHc--CCc-EEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhhhhcccCCCCh
Q 015435          221 QGFA-SGSLDADAQSVRMFVAD--GGE-CLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPI  295 (407)
Q Consensus       221 ~~~~-~~~~~~~~~~~~~~~~~--~~~-~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (407)
                      .... +.+.   ......+...  .+. ++++.|++|+++  |+ ..|++  +++++-....+...+. .  ..+.+++.
T Consensus       334 ~~~~~f~~~---~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i--~v~~~i~~~~~~~~~~-~--~~STSpsy  403 (715)
T 3n75_A          334 VPYTNFSPI---YEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMI--HVKGDVNEETFNEAYM-M--HTTTSPHY  403 (715)
T ss_dssp             CTTGGGSGG---GTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEE--EEESCCCHHHHHHHHH-H--TSCSSCCH
T ss_pred             ccccccCCc---cccccccccCcCCCEEEEEEeccccccc--CCCCeeEE--EeCchhhHHHHHHHHH-h--hcCCCchH
Confidence            7553 3211   0000001111  233 366999999965  55 34666  4554322222322222 2  12335666


Q ss_pred             hHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCC-ccc-------------------------
Q 015435          296 HGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT--PGD-WSH-------------------------  347 (407)
Q Consensus       296 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~-~~~-------------------------  347 (407)
                      +.+.++..+++-..     ...-+++++++.++.+++++.|++++.  ..+ +.+                         
T Consensus       404 ~~~AsldaA~~~~~-----~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~  478 (715)
T 3n75_A          404 GIVASTETAAAMMK-----GNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKN  478 (715)
T ss_dssp             HHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTT
T ss_pred             HHHHHHHHHHHHHH-----hhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccc
Confidence            55555544432110     011234556666666666666655421  000 000                         


Q ss_pred             -------ccCCceeEEe-----------cCCCHHHHHHhHhhccEEEcCCC--eE----EecCCCCCChhHHHHHHHHHH
Q 015435          348 -------IIKQIGMFTF-----------TGLNSEQVAFMTKEYHIYMTSDG--RI----SMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       348 -------~~~~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~gg--Ri----s~~~~~~e~i~~~~~~l~~~l  403 (407)
                             ..|.--....           .++++..+.+.|+++||.+...+  .|    +++. +++++++++++|.++-
T Consensus       479 ~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~-~~~~~~~L~~aL~~~~  557 (715)
T 3n75_A          479 IDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGI-DKTKALSLLRALTDFK  557 (715)
T ss_dssp             CCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTC-CHHHHHHHHHHHHHHH
T ss_pred             cccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCC-CHHHHHHHHHHHHHHH
Confidence                   0000000011           13456677777788899887765  33    3443 6677888888887754


Q ss_pred             H
Q 015435          404 T  404 (407)
Q Consensus       404 ~  404 (407)
                      +
T Consensus       558 ~  558 (715)
T 3n75_A          558 R  558 (715)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.73  E-value=7.3e-18  Score=157.51  Aligned_cols=313  Identities=15%  Similarity=0.113  Sum_probs=192.0

Q ss_pred             cccchhHHHHHHHHhcccc---cc---ccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec-CCcccHHHHHHH
Q 015435           48 PLVLNVVRKAEQLLVNDQS---RV---KEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC-LSGTGSLRVGAE  118 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~---~~---~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t-~g~t~a~~~~~~  118 (407)
                      |.|+++++++...+.+...   ..   +..++  ..-+.+.|+.+++++ +..    ++++|+|  + +|+|+++++++ 
T Consensus        23 ~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll-~~~----~~~evif--~t~~~T~a~n~a~-   94 (377)
T 3e77_A           23 MLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELL-AVP----DNYKVIF--LQGGGCGQFSAVP-   94 (377)
T ss_dssp             CCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHH-TCC----TTEEEEE--ESSHHHHHHHHHH-
T ss_pred             CCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHh-CCC----CCCeEEE--EcCchHHHHHHHH-
Confidence            5677777777766641111   10   11111  123677888999988 432    1246777  6 78999999994 


Q ss_pred             HHHhhcC--CCeEEecCCCCCCh--HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCC
Q 015435          119 FLARHYH--QLTIYIPQPTWGNH--PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVD  194 (407)
Q Consensus       119 ~~~~~~~--gd~Vi~~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~  194 (407)
                       ...+.+  ||+|++...++...  ...++..|..++.++.  +++++.++++++..+.  ++++++.+ ++..|.||++
T Consensus        95 -~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~--~~~~~~~~~~~~~~i~--~~t~lV~~-~h~et~tG~~  168 (377)
T 3e77_A           95 -LNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPK--LGSYTKIPDPSTWNLN--PDASYVYY-CANETVHGVE  168 (377)
T ss_dssp             -HHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCC--CSSSCSCCCGGGCCCC--TTCSCEEE-ESEETTTTEE
T ss_pred             -HhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEecc--CCCcCCCCChHHhccC--CCccEEEE-eCccCchheE
Confidence             444544  89988776654433  3345567888777776  3455677777766555  66777777 6667888998


Q ss_pred             CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhh
Q 015435          195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV  274 (407)
Q Consensus       195 ~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~  274 (407)
                      .+.        +|+++|+++++|.+.+ +...+.+.+        . .+  ++..|..|.+|.+|  +|+++  .+. ++
T Consensus       169 ~pi--------i~~~~~~~~~vD~~q~-~g~~~id~~--------~-~~--~~~~s~~K~~gp~G--~g~l~--~~~-~~  223 (377)
T 3e77_A          169 FDF--------IPDVKGAVLVCDMSSN-FLSKPVDVS--------K-FG--VIFAGAQKNVGSAG--VTVVI--VRD-DL  223 (377)
T ss_dssp             CSS--------CCCCTTCCEEEECTTT-TTSSCCCGG--------G-CS--EEEEEGGGTTSCTT--CEEEE--EET-TS
T ss_pred             chh--------hhccCCCEEEEEcccc-cCCCCCchh--------h-cC--EEEEecccccCCCc--cEEEE--EcH-HH
Confidence            875        3778999999999854 333222211        1 12  46789999998777  56763  332 21


Q ss_pred             HHHHH----HHH--hhh--hhcccCCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 015435          275 ASRVE----SQL--KLV--IRPMYSSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDW  345 (407)
Q Consensus       275 ~~~~~----~~~--~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  345 (407)
                      .+++.    ..+  ...  ......+++..+..++..+++-..     .. .+++..++.++.++++++.|++++.   +
T Consensus       224 l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~-----~~GG~~~i~~~~~~l~~~l~~~L~~~~g---~  295 (377)
T 3e77_A          224 LGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIK-----NNGGAAAMEKLSSIKSQTIYEIIDNSQG---F  295 (377)
T ss_dssp             CSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHHTSTT---S
T ss_pred             HhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHHHHHHHHhcCC---c
Confidence            11000    000  000  011233566666666665554221     12 3778889999999999999998732   3


Q ss_pred             cccc----CCce---eEEecCCCH--H---HHHHhHhhccEEEcCC----C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          346 SHII----KQIG---MFTFTGLNS--E---QVAFMTKEYHIYMTSD----G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       346 ~~~~----~~~~---~~~~~~~~~--~---~~~~~l~~~gi~~~~g----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ....    ...+   .|.+.+++.  +   .+...++++||.+.+|    |  |+|+.. .+++|++++++.|++++++.
T Consensus       296 ~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~~  375 (377)
T 3e77_A          296 YVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH  375 (377)
T ss_dssp             EECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence            3111    1222   233345432  1   2233344689999887    3  999876 47899999999999998865


Q ss_pred             C
Q 015435          407 G  407 (407)
Q Consensus       407 ~  407 (407)
                      +
T Consensus       376 ~  376 (377)
T 3e77_A          376 Q  376 (377)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.72  E-value=1.9e-17  Score=169.65  Aligned_cols=343  Identities=11%  Similarity=0.132  Sum_probs=196.1

Q ss_pred             CeeeeeeeeeecCCCccc-cchhHHHHHHHHhccccccc--cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435           32 VKLNLGVGAYRTEEGKPL-VLNVVRKAEQLLVNDQSRVK--EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS  108 (407)
Q Consensus        32 ~~i~l~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g  108 (407)
                      ++||+..|++..+.| .. .+++++++.+++. .-.+..  ++. ..-..+|.+++++.. +...    .+.+++  ++|
T Consensus       381 ~ylD~~sg~~~~~lG-h~~~p~i~~Ai~~Q~~-~l~h~~~~~~~-~~~~~~Lae~L~~~~-p~~~----l~~vff--~~S  450 (831)
T 4a0g_A          381 QQFDACASWWTQGPD-PTFQAELAREMGYTAA-RFGHVMFPENV-YEPALKCAELLLDGV-GKGW----ASRVYF--SDN  450 (831)
T ss_dssp             EEEETTHHHHTCCCC-HHHHHHHHHHHHHHHH-HHSSCCCTTEE-CHHHHHHHHHHHHTT-TTTT----CCEEEE--ESS
T ss_pred             heeeecccHhhcCCC-CCCCHHHHHHHHHHHh-hcccccccccC-CHHHHHHHHHHHHhC-CCCC----CCEEEE--CCC
Confidence            799999998877777 66 7788888888875 111110  111 112335556666554 2110    268999  999


Q ss_pred             cccHHHHHHHHH-Hhh--cCC------------CeEEecCCCCCChHHH-HhhcCce---------------e-------
Q 015435          109 GTGSLRVGAEFL-ARH--YHQ------------LTIYIPQPTWGNHPKV-FTLAGLS---------------V-------  150 (407)
Q Consensus       109 ~t~a~~~~~~~~-~~~--~~g------------d~Vi~~~p~y~~~~~~-~~~~G~~---------------~-------  150 (407)
                      |++|++.++++. +..  ..|            .+||...-+|++.... +...|..               +       
T Consensus       451 GSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~  530 (831)
T 4a0g_A          451 GSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTV  530 (831)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEE
T ss_pred             hhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccc
Confidence            999999999887 322  122            2688888888755433 3322211               0       


Q ss_pred             ------eEEEeecCCCCC--------c-C------------------hhhHHHHHHc-----CCC-CcEEEEecCC-CCC
Q 015435          151 ------KTYRYYDPATRG--------L-N------------------FQGLLEDLRA-----APS-GAIVLLHACA-HNP  190 (407)
Q Consensus       151 ------~~v~~~~~~~~~--------~-d------------------~~~l~~~i~~-----~~~-~~~v~i~~~p-~NP  190 (407)
                            ..++.  +..+.        . +                  .+.+++.+.+     .+. ..++++ -.- ++.
T Consensus       531 ~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~-Epvvqg~  607 (831)
T 4a0g_A          531 FLSNGSWNISL--PESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALII-EPVIHGA  607 (831)
T ss_dssp             EEETTEEEEEC--CTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEE-CCSEETT
T ss_pred             cccCCceEecC--CccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEE-ecccccC
Confidence                  01122  11000        0 1                  2456666642     123 344444 332 677


Q ss_pred             CCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEe
Q 015435          191 TGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIV  268 (407)
Q Consensus       191 tG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v  268 (407)
                      .|.. ++++.+++|.++|++||++||+||++.+|+..+.   .+....+. -..+++   +++|.++ .| +++|++  +
T Consensus       608 gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~---~fa~e~~g-v~PDii---tlsK~L~-gG~~Plgav--~  677 (831)
T 4a0g_A          608 GGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV---ETTTELLG-CKPDIA---CFAKLLT-GGMVPLAVT--L  677 (831)
T ss_dssp             TTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB---SSTHHHHS-SCCSEE---EECGGGG-TTSSCCEEE--E
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC---chhhHhcC-CCCcEE---EEecccc-cCccCcEEE--E
Confidence            7776 5889999999999999999999999999987653   22322222 122333   5999998 47 799999  5


Q ss_pred             ecChhhHHHHHHHHhhh------hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH-HHHHHHHHHHhcCC
Q 015435          269 CKTEDVASRVESQLKLV------IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIIS-MRQQLFDALSARGT  341 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~  341 (407)
                      ++     +++.+.+...      ....+++.+++++.++.+.|+...- +.+.+.+.+..+++++ ..+.+.+.+.+.+.
T Consensus       678 ~~-----~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~-~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~  751 (831)
T 4a0g_A          678 AT-----DAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKD-PETNHNITSQGKTLRELWDEELVQQISSHSA  751 (831)
T ss_dssp             EC-----HHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHC-TTTCTTBCTTSSBBCCCSCHHHHHHHHHSTT
T ss_pred             EC-----HHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            76     5555555432      1224457788888888777652110 0000001100111111 01233444544442


Q ss_pred             CCCcccccCCceeEEecCC--C----------HHHHHHhHhhccEEEcCCC---eEEec-CCCCCChhHHHHHHHHHHHh
Q 015435          342 PGDWSHIIKQIGMFTFTGL--N----------SEQVAFMTKEYHIYMTSDG---RISMA-GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~l~~~gi~~~~gg---Ris~~-~~~~e~i~~~~~~l~~~l~~  405 (407)
                         +..+...|.++. +.+  +          ...+...+.++||.+.|.|   ||+.. .++++++++++++|.+++++
T Consensus       752 ---v~~vrg~Gl~~~-iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~  827 (831)
T 4a0g_A          752 ---VQRVVVIGTLFA-LELKADASNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGE  827 (831)
T ss_dssp             ---EEEEEEETTEEE-EEEC---------CHHHHHHHHHHHHTTEECCCBTTEEEEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             ---ceeEeecccEEE-EEEecCccccccchHHHHHHHHHHHHCCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence               333334444333 222  1          1234445556899999987   66532 25889999999999999887


Q ss_pred             hC
Q 015435          406 MG  407 (407)
Q Consensus       406 ~~  407 (407)
                      ++
T Consensus       828 l~  829 (831)
T 4a0g_A          828 FN  829 (831)
T ss_dssp             TC
T ss_pred             hc
Confidence            64

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.70  E-value=1.6e-16  Score=147.81  Aligned_cols=318  Identities=13%  Similarity=0.115  Sum_probs=190.2

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhcc---ccccc---cCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceE
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND---QSRVK---EYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVT  102 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~  102 (407)
                      .+.++|+.|-      .+.|+.+++++...+.+.   +...+   +.++  ..-+++.|+.+++++ +...    +++|+
T Consensus         4 ~~~~~f~pgp------t~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll-~~~~----~~~v~   72 (361)
T 3m5u_A            4 MRKINFSAGP------STLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLY-ELND----DYEVL   72 (361)
T ss_dssp             CCCEECCSSS------CCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHH-TCCT----TEEEE
T ss_pred             cceEeecCCC------CCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHh-CCCC----CceEE
Confidence            4566777552      155667766666555310   01111   1111  123677888899988 4321    23555


Q ss_pred             EeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEEEeecCCCCC--cChhhHHHHHHcCCCC
Q 015435          103 TVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTYRYYDPATRG--LNFQGLLEDLRAAPSG  178 (407)
Q Consensus       103 ~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~--~d~~~l~~~i~~~~~~  178 (407)
                      |+ |+|+|+++++++  ...+ +||++.+...+...  +...++..|++++.++.+  ++..  ++++.  + +.  +++
T Consensus        73 f~-t~~~T~a~n~~~--~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~--~~g~~~~~~~~--~-l~--~~t  141 (361)
T 3m5u_A           73 FL-QGGASLQFAMIP--MNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASS--EESNFDHIPRV--E-FS--DNA  141 (361)
T ss_dssp             EE-SSHHHHHHHHHH--HHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEEC--TTTTSCSCCCC--C-CC--TTS
T ss_pred             EE-cCcHHHHHHHHH--HhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecc--cCcCCCcCChh--h-cC--CCC
Confidence            42 999999999994  4445 78865322222222  233455779999999983  3332  46665  3 65  677


Q ss_pred             cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc
Q 015435          179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY  258 (407)
Q Consensus       179 ~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  258 (407)
                      +++.+ ++.+|.||++.+.     |   ++ +|+++++|.+.+ +...+.+.+           +..+++.|..|.+|.+
T Consensus       142 ~lv~~-~~~e~~tG~~~~~-----i---~~-~~~~~~vD~~q~-~g~~~id~~-----------~~d~~~~s~~K~~gp~  199 (361)
T 3m5u_A          142 DYAYI-CSNNTIYGTQYQN-----Y---PK-TKTPLIVDASSD-FFSRKVDFS-----------NIALFYGGVQKNAGIS  199 (361)
T ss_dssp             SEEEE-ESEETTTTEECSS-----C---CC-CSSCEEEECGGG-TTSSCCCCT-----------TEEEEEEETTTTSSCT
T ss_pred             CEEEE-eCCCCCcceeCCc-----c---cc-cCCEEEEEcccc-cCCCCCCcc-----------cCCEEEEechhccCCC
Confidence            88777 6677888998652     3   33 499999999754 433222211           2247888999999877


Q ss_pred             CCCcceeEEeecChhhHHHHHH----HH---hhh--hhcccCCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHH
Q 015435          259 GERVGALSIVCKTEDVASRVES----QL---KLV--IRPMYSSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISM  328 (407)
Q Consensus       259 G~r~G~~~~v~~~~~~~~~~~~----~~---~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~  328 (407)
                      |  +|++  +.+ +++.+++..    .+   ...  ....+.+++..+..++..+++-..     .. .+++..++.++.
T Consensus       200 G--~g~l--~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~-----~~gG~~~i~~~~~~l  269 (361)
T 3m5u_A          200 G--LSCI--FIR-KDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLL-----NQGGLDKVHEKNSQK  269 (361)
T ss_dssp             T--CEEE--EEE-HHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHHH
T ss_pred             c--cEEE--EEc-HHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHH-----HccCHHHHHHHHHHH
Confidence            6  5777  344 443333321    00   000  111223566666665555554211     01 267788899999


Q ss_pred             HHHHHHHHHhcCCCCCc-ccc-cC--C-ceeEE--ecC---CCHHHHHHhHhhccEEEcCC----C--eEEecC-CCCCC
Q 015435          329 RQQLFDALSARGTPGDW-SHI-IK--Q-IGMFT--FTG---LNSEQVAFMTKEYHIYMTSD----G--RISMAG-LSSKT  391 (407)
Q Consensus       329 ~~~l~~~l~~~~~~~~~-~~~-~~--~-~~~~~--~~~---~~~~~~~~~l~~~gi~~~~g----g--Ris~~~-~~~e~  391 (407)
                      ++++++.|++++.   + ... .+  . .+...  +.+   ++ +.+...|+++||.+.+|    |  |+|+.. .+++|
T Consensus       270 ~~~l~~~L~~~~g---~~~~~~~~~~rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~ed  345 (361)
T 3m5u_A          270 ATMLYECIDLSNG---FYKGHADKKDRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQ  345 (361)
T ss_dssp             HHHHHHHHHTSTT---SEEESSCGGGBCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHH
T ss_pred             HHHHHHHHHHCCC---eeeccCCHHHcCCeEEEEECCCchhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHH
Confidence            9999999998862   2 221 11  1 22332  233   23 23446667789999887    3  999876 47899


Q ss_pred             hhHHHHHHHHHHHhh
Q 015435          392 VPHLTDAIHAAVTRM  406 (407)
Q Consensus       392 i~~~~~~l~~~l~~~  406 (407)
                      ++++++.|+++.++.
T Consensus       346 Id~l~~al~~~~~~~  360 (361)
T 3m5u_A          346 VKTLCEFMKEFQGKY  360 (361)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999998764

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.68  E-value=1.9e-16  Score=148.77  Aligned_cols=286  Identities=13%  Similarity=0.062  Sum_probs=176.9

Q ss_pred             CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCCh--HHHHhhcCceeeE
Q 015435           75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNH--PKVFTLAGLSVKT  152 (407)
Q Consensus        75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~--~~~~~~~G~~~~~  152 (407)
                      .-+++.|+.+++++ +..    ++++|+++ |+|+|+++++++  ...+.+||+|++...++..+  ...++..| ++..
T Consensus        72 ~~~~~ar~~la~ll-~~~----~~~evif~-t~~~T~a~n~ai--~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~  142 (386)
T 3qm2_A           72 QVAEEAEQDFRDLL-NIP----SNYKVLFC-HGGGRGQFAGVP--LNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQI  142 (386)
T ss_dssp             -CCHHHHHHHHHHH-TCC----TTEEEEEE-ESCTTHHHHHHH--HHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEE
T ss_pred             HHHHHHHHHHHHHh-CCC----CCceEEEE-cCCchHHHHHHH--HhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEE
Confidence            45889999999999 432    12467761 489999999994  55578999987555443333  33445678 8888


Q ss_pred             EEee-cCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          153 YRYY-DPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       153 v~~~-~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      ++.+ .+++..++++++++.+.  +++++|++ ++..|.||+++.  ++++|.     +|+++++|.+.+ ++..+.+.+
T Consensus       143 v~~~~~~~G~~~~~~~~~~~l~--~~t~lV~~-~h~et~tG~~i~--pi~~i~-----~g~~~~vDa~qs-~g~~pidv~  211 (386)
T 3qm2_A          143 IDAKITVDGKRAVKPMREWQLS--DNAAYLHY-CPNETIDGIAID--ETPDFG-----PEVVVTADFSST-ILSAPLDVS  211 (386)
T ss_dssp             EECEEEETTEEEECCGGGCCCC--TTCSCEEE-CSEETTTTEECC--CCCCCC-----TTCCEEEECTTT-TTSSCCCGG
T ss_pred             EecCcccCCCCCCchHHHhhcC--CCCcEEEE-ECCcCCcCEecC--chhhhc-----CCCEEEEEcccc-cCCCCCCcc
Confidence            8873 02333378888877776  67788776 666778899633  344553     799999999854 333222211


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHH-------H---HHHHhhhhhcccCCCChhHHHHH
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASR-------V---ESQLKLVIRPMYSSPPIHGASIV  301 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~  301 (407)
                              . .+  +...|..|.+|.+|  +|+++  .+ +++.++       +   ........  ...+++..+..++
T Consensus       212 --------~-~~--~~~~s~hK~lGP~G--~g~l~--v~-~~~~~~~~~~~p~~~~~~~~~~~~~--~~gTp~v~~i~~l  273 (386)
T 3qm2_A          212 --------R-YG--VIYAGAQKNIGPAG--LTLVI--VR-EDLLGKAHESCPSILDYTVLNDNDS--MFNTPPTFAWYLS  273 (386)
T ss_dssp             --------G-CS--EEEEETTTTTCCTT--EEEEE--EE-GGGCSCCCTTSCGGGCHHHHHHC---------CCSHHHHH
T ss_pred             --------c-cC--EEEEecccccCCCc--cEEEE--EC-HHHHhhhcccCCcHHHHHHHhhcCC--CCCCCcHHHHHHH
Confidence                    1 12  45689999998766  57773  43 222110       0   01111111  1225566666666


Q ss_pred             HHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-c--CCc-eeE--EecC--CCHHHHHHhHhhc
Q 015435          302 ATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDWSHI-I--KQI-GMF--TFTG--LNSEQVAFMTKEY  372 (407)
Q Consensus       302 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~--~~~-~~~--~~~~--~~~~~~~~~l~~~  372 (407)
                      ..+++-..     .. .+++..++.++.++++++.|++++.   +... .  ... +..  .+.+  ++.+++.. |+++
T Consensus       274 ~~Al~~~~-----~~gG~~~i~~~~~~l~~~l~~~l~~~~~---~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~-L~~~  344 (386)
T 3qm2_A          274 GLVFKWLK-----AQGGVAAMHKINQQKAELLYGVIDNSDF---YRNDVAQANRSRMNVPFQLADNTLDKVFLEE-SFAA  344 (386)
T ss_dssp             HHHHHHHH-----HHTHHHHHHHHHHHHHHHHHHHHHTCSS---EECCBCGGGBCSSEEEEEESSGGGHHHHHHH-HHHT
T ss_pred             HHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHCCC---cccCCCHHHcCceEEEEECCCccccHHHHHH-HHHC
Confidence            65554221     12 3778889999999999999998762   1211 1  111 222  2232  34333444 6778


Q ss_pred             cEEEcCC----C--eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          373 HIYMTSD----G--RISMAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       373 gi~~~~g----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      ||.+.+|    |  |+|+.. .+++|++++++.|+++.++.|
T Consensus       345 gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~~~  386 (386)
T 3qm2_A          345 GLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERRHG  386 (386)
T ss_dssp             TEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHhcC
Confidence            9999876    3  999876 478999999999999988754

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.63  E-value=1.2e-14  Score=135.01  Aligned_cols=293  Identities=15%  Similarity=0.184  Sum_probs=178.8

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCce-EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH--------hhc-
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRV-TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF--------TLA-  146 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i-~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~--------~~~-  146 (407)
                      ++.+....++.+|+....     +- +=+|..||+.|+..+  +.++++|||+|+..+....+|...-        ... 
T Consensus       101 iE~la~~rak~lF~a~~A-----~w~VNVQP~SGs~AN~av--y~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg  173 (490)
T 3ou5_A          101 IELLCQRRALEAFDLDPA-----QWGVNVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS  173 (490)
T ss_dssp             HHHHHHHHHHHHTTCCTT-----TEEEECCCSSHHHHHHHH--HHHHCC-CCCEECBC----------------------
T ss_pred             HHHHHHHHHHHHhCCCcc-----ccCCCCCcCCHHHHHHHH--HHHHcCCCCEEEecccCCCCcccccccCCCccccccc
Confidence            445555555556565322     11 125688899999988  5777999999999997776654321        112 


Q ss_pred             -CceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-cccc
Q 015435          147 -GLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFA  224 (407)
Q Consensus       147 -G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~  224 (407)
                       -.+.+.+++ +++++.+|.+++++...+. +.++|++ ..-.+|-     .-|++++.++|++.|.+|++|.++ ++++
T Consensus       174 ~~~~~~~Y~v-d~~t~~IDyd~~~~~A~~~-kPklIi~-G~SaY~r-----~id~~~~reIAd~vGA~Lm~DmAHiaGLV  245 (490)
T 3ou5_A          174 IFFESMPYKL-NPKTGLIDYNQLALTARLF-RPRLIIA-GTSAYAR-----LIDYARMREVCDEVKAHLLADMAHISGLV  245 (490)
T ss_dssp             ------CBCE-ETTTTEECHHHHHHHHHHH-CCSEEEE-CCSSCCS-----CCCHHHHHHHHHHHTCEEEEECGGGHHHH
T ss_pred             cccccccccc-CCCCCcccHHHHHHHHhhc-CCCeEEE-CCccCcc-----ccCHHHHHHHHhhcccEEEechhhhhhhh
Confidence             235666667 4667889999999988743 3455544 4434443     337888999999999999999997 6666


Q ss_pred             CCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChh----------hHHHHHHHHhhhhhcccCCCC
Q 015435          225 SGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTED----------VASRVESQLKLVIRPMYSSPP  294 (407)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~----------~~~~~~~~~~~~~~~~~~~~~  294 (407)
                      ..+.-+.+.      +.  ..++..|..|++  +|-|-|.|  ++.++.          ....+.+++.....+...+.|
T Consensus       246 A~g~~psP~------~~--ADvVTtTTHKTL--rGPrGG~I--l~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp  313 (490)
T 3ou5_A          246 AAKVIPSPF------KH--ADIVTTTTHKTL--RGARSGLI--FYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGP  313 (490)
T ss_dssp             HTTSSCCGG------GT--CSEEEEESSSTT--CSCSCEEE--EEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSC
T ss_pred             cccccCCcc------cc--ceEEeccccccc--cCCCceEE--EeccccccccccccchhHHHHHHHHHhhcCccccccc
Confidence            554322211      11  347788899986  68898888  566420          000244455555555444555


Q ss_pred             hhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCc-eeEEec-----CCCHHHHHHh
Q 015435          295 IHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQI-GMFTFT-----GLNSEQVAFM  368 (407)
Q Consensus       295 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~  368 (407)
                      .....++.++--...    +....+...+++.+|.+.|.+.|.+.|    +.++.... +-.+++     +++...+...
T Consensus       314 ~~h~IAAkAVaf~Ea----~~p~fk~Ya~qVv~NAkaLA~~L~~~G----~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~  385 (490)
T 3ou5_A          314 HNHAIAAVAVALKQA----CTPMFREYSLQVLKNARAMADALLERG----YSLVSGGTDNHLVLVDLRPKGLDGARAERV  385 (490)
T ss_dssp             CHHHHHHHHHHHHHH----HSHHHHHHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH----HhHhHHHHHHHHHHHHHHHHHHHHhCC----CeeecCCCCceEEEEeccccCCCHHHHHHH
Confidence            555555544311121    223456666777889999999999998    56553211 112223     5578889999


Q ss_pred             HhhccEEEcC------------CC-eEEec-----CCCCCChhHHHHHHHHHHH
Q 015435          369 TKEYHIYMTS------------DG-RISMA-----GLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       369 l~~~gi~~~~------------gg-Ris~~-----~~~~e~i~~~~~~l~~~l~  404 (407)
                      |++.||.+..            +| ||...     +..++|++++.+.|.++++
T Consensus       386 Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          386 LELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             HHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999998842            24 88643     2577889999999888764

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.61  E-value=6.4e-14  Score=130.68  Aligned_cols=302  Identities=12%  Similarity=0.040  Sum_probs=174.7

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC----CCeEEecCCCCCChHHHHhhcCceeeE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH----QLTIYIPQPTWGNHPKVFTLAGLSVKT  152 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~----gd~Vi~~~p~y~~~~~~~~~~G~~~~~  152 (407)
                      +..|.+.++.-+...-+.+ .....++  ++|+|+++.++  ++..+.+    +|.||++..++.+....+..+|+++++
T Consensus       114 l~~ltn~l~ld~L~~~G~~-~~~~~fl--VnGsTgg~lam--ilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~  188 (501)
T 3hl2_A          114 LNKITNSLVLDIIKLAGVH-TVANCFV--VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVV  188 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCT-TCCEEEE--ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCC-CCCcEEE--ECcHHHHHHHH--HHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEE
Confidence            4556555444332333332 1235677  99999887777  3555553    499999999999999999999999999


Q ss_pred             EEee-cCCCCCcChhhHHHHHHcCC-CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          153 YRYY-DPATRGLNFQGLLEDLRAAP-SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       153 v~~~-~~~~~~~d~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      ++.. +++..++|++++++++.+.+ ...++++.+.+.|..+.   .+++++|+++|++||+++++|+||......   .
T Consensus       189 V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~---~ddI~eIaeIch~~gIpllVDeAhGah~~~---~  262 (501)
T 3hl2_A          189 IENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRV---PDRLEELAVICANYDIPHIVNNAYGVQSSK---C  262 (501)
T ss_dssp             ECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBC---CCCHHHHHHHHHHHTCCEEEECTTCTTCHH---H
T ss_pred             EeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcc---cccHHHHHHHHHHcCCeEEEeCcchhhhhh---h
Confidence            8752 33357899999999998653 23333332333443333   347999999999999999999999755421   0


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhh
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTM  310 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (407)
                      ...+ ......+...+++.|..|.+-.+ +. |+++ ...++++.+++...+.    ...++.+.....++...+.    
T Consensus       263 ~~lp-~sA~~~GrAD~vVqS~HK~llvp-IG-G~ii-~~~d~e~l~~~~~~yP----Gr~S~Spsldl~~tLL~lG----  330 (501)
T 3hl2_A          263 MHLI-QQGARVGRIDAFVQSLDKNFMVP-VG-GAII-AGFNDSFIQEISKMYP----GRASASPSLDVLITLLSLG----  330 (501)
T ss_dssp             HHHH-HHHHHHSCCCEEEEEHHHHHCCC-SS-CEEE-EESCHHHHHHHHHTSC----SCBCSHHHHHHHHHHHHHH----
T ss_pred             hhhH-HHHHhcCCCcEEEecccccceee-cC-ceEE-EeCCHHHHHHHHHhCC----CCCCCcHHHHHHHHHHHHH----
Confidence            1111 11223334667889999997544 22 3341 4667665554322110    0011223332333332222    


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC---CceeEEec-CCC------HHHHHHhHhhccE---EEc
Q 015435          311 YKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK---QIGMFTFT-GLN------SEQVAFMTKEYHI---YMT  377 (407)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~-~~~------~~~~~~~l~~~gi---~~~  377 (407)
                          .+..+++.++..++.++|.+.|+++....+-.+...   ..++-+.+ .+.      .-.+-.+|-.++|   .+.
T Consensus       331 ----r~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv  406 (501)
T 3hl2_A          331 ----SNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVV  406 (501)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEE
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceee
Confidence                244566667777777888887776521111122211   12221112 221      2233445544444   333


Q ss_pred             C-C-------------C---------eEEec---CCCCCChhHHHHHHHHHHHh
Q 015435          378 S-D-------------G---------RISMA---GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       378 ~-g-------------g---------Ris~~---~~~~e~i~~~~~~l~~~l~~  405 (407)
                      + +             |         -++..   +++++|++.++++|.+++.+
T Consensus       407 ~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~  460 (501)
T 3hl2_A          407 PLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKA  460 (501)
T ss_dssp             CTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            3 2             1         34332   26889999999999999864

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.55  E-value=6.3e-13  Score=125.61  Aligned_cols=186  Identities=12%  Similarity=0.017  Sum_probs=118.4

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC----CCeEEecCCCCCChHHHHhhcCceeeE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH----QLTIYIPQPTWGNHPKVFTLAGLSVKT  152 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~----gd~Vi~~~p~y~~~~~~~~~~G~~~~~  152 (407)
                      ...+.+.+..++...-+.+ +..-.++  ++|+|++..++.  +..+.+    ++.|+++..+|.+..+++..+|++++.
T Consensus        96 ~~~~e~~~~~~~~~~lGlp-~~~~~~l--V~GaT~~~~a~~--L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~  170 (450)
T 3bc8_A           96 LNKITNSLVLNVIKLAGVH-SVASCFV--VPMATGMSLTLC--FLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVV  170 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCT-TCCEEEE--ESSCHHHHHHHH--HHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCC-CCceEEE--ECCHHHHHHHHH--HHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEE
Confidence            4455555555553322221 1133567  899985555552  444443    899999999999999999999999888


Q ss_pred             EEee-cCCCCCcChhhHHHHHHcCC-CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          153 YRYY-DPATRGLNFQGLLEDLRAAP-SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       153 v~~~-~~~~~~~d~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      ++.. +++...+|++.+++++.+.+ ..+.+++.+...+.+|.   .+++++|+++|++||+++++|+||......    
T Consensus       171 v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~---~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~----  243 (450)
T 3bc8_A          171 IENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRV---PDRLEELAVICANYDIPHVVNNAYGLQSSK----  243 (450)
T ss_dssp             ECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBC---CCCHHHHHHHHHHHTCCEEEECTTTTTCHH----
T ss_pred             EEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCce---ecCHHHHHHHHHHCCCeEEEECCCchhhhh----
Confidence            8542 23357899999999997644 23444443333444445   457999999999999999999999754421    


Q ss_pred             hhHHHH-HHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHH
Q 015435          231 DAQSVR-MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRV  278 (407)
Q Consensus       231 ~~~~~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~  278 (407)
                       ...+. .......-..++.|..|.+..+ ...+.+  ...|++..+++
T Consensus       244 -~~~l~~~a~~~~~AD~~v~S~HK~l~a~-~~~~~l--~~rd~~~~~~~  288 (450)
T 3bc8_A          244 -CMHLIQQGARVGRIDAFVQSLDKNFMVP-VGGAII--AGFNEPFIQDI  288 (450)
T ss_dssp             -HHHHHHHHHHHSCCCEEEEEHHHHHSCC-SSCEEE--EESCHHHHHHH
T ss_pred             -hHhHHHHHhcccCCCEEEECCccCCCch-hccEEE--EecCHHHHHHH
Confidence             11111 1111123456778999987643 334455  55676654443

>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*

Probab=84.36  E-value=5.8  Score=38.06  Aligned_cols=70  Identities=10%  Similarity=0.022  Sum_probs=47.9

Q ss_pred             HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeee
Q 015435          140 PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF  216 (407)
Q Consensus       140 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~  216 (407)
                      .+.+...++|+..+.+.|+.++.+..+..-++-.....+       ....+.|..|+++|+++|++.|+++|+-||-
T Consensus       205 id~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~Ga~~-------~~~~~~~g~YT~~di~eIv~YA~~rgI~VIP  274 (525)
T 3gh5_A          205 IDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIGSKG-------QVGGGPGGYYTQEQFKDIVSYAAERYIEVIP  274 (525)
T ss_dssp             HHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSC-------CTTSSCCCCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred             HHHHHHcCCcEEEEEeccCCccccccccchhhhhccCcc-------ccCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence            344556788999999887777777666555443311111       0112346679999999999999999988774

>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*

Probab=82.27  E-value=6.5  Score=37.67  Aligned_cols=69  Identities=10%  Similarity=-0.063  Sum_probs=46.7

Q ss_pred             HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeee
Q 015435          141 KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF  216 (407)
Q Consensus       141 ~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~  216 (407)
                      +.+...++|+..+.+.|+.++.+.....-++......+       ....+.|..++++++++|++.|+++|+-||-
T Consensus       181 d~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~ga~~-------~~~~~~~g~YT~~di~eiv~yA~~rgI~VIP  249 (512)
T 1jak_A          181 DRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGST-------EVGGGPGGYYTKAEYKEIVRYAASRHLEVVP  249 (512)
T ss_dssp             HHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSC-------CTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHcCCcEEEEEeccCCCceehhhhhHHHHhhcCcc-------ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            34446788888888877777777665554443311111       1122336789999999999999999998884

>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*

Probab=81.47  E-value=3.6  Score=39.41  Aligned_cols=64  Identities=9%  Similarity=0.013  Sum_probs=43.5

Q ss_pred             HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeee
Q 015435          141 KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF  216 (407)
Q Consensus       141 ~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~  216 (407)
                      +.+...++|+..+.+.|+.++.+.....-++......           .| |..++++|+++|++.|+++|+-||-
T Consensus       175 d~ma~~KlN~lh~HltDdq~wr~e~~~~P~Lt~~Ga~-----------~~-~~~YT~~di~eiv~yA~~rgI~VIP  238 (507)
T 1now_A          175 DAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSY-----------SL-SHVYTPNDVRMVIEYARLRGIRVLP  238 (507)
T ss_dssp             HHHHHTTCCEEEEECCCSSCCCBCCSSCHHHHHHHSS-----------ST-TSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHhCCcEEEEeeccCccceeeccchhhhhcccCc-----------CC-CCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            3444678888888887766666655444333221011           12 6679999999999999999988884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	407
d1ajsa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig	1e-117
d3tata_	397	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-107
d7aata_	401	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi	1e-106
d1yaaa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak	1e-105
d2q7wa1	396	c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT	1e-103
d2ay1a_	394	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	2e-98
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	6e-12
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	4e-08
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	7e-07

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

 Score =  346 bits (888), Expect = e-117
 Identities = 206/410 (50%), Positives = 280/410 (68%), Gaps = 6/410 (1%)

Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
             SVF ++ +A    +  +   + +D  P K+NLGVGAYRT++ +P VL VVRK EQ + 
Sbjct: 2   PPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIA 61

Query: 63  NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122
           N+ S   EYLPI+GL +F   +++L LG DSPA+++ RV  VQ L GTG+LR+GAEFLAR
Sbjct: 62  NNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLAR 121

Query: 123 HYHQL-----TIYIPQPTWGNHPKVFTLAGLS-VKTYRYYDPATRGLNFQGLLEDLRAAP 176
            Y+        +Y+  PTW NH  VFT AG   +++YRY+D   RGL+ QG L DL  AP
Sbjct: 122 WYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP 181

Query: 177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR 236
             +I +LHACAHNPTG DPT EQW+QI  +M+ + L PFFDSAYQGFASG+L+ DA ++R
Sbjct: 182 EFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIR 241

Query: 237 MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIH 296
            FV++G E   AQS++KN GLY ERVG L++V K  D   RV SQ++ ++R  +S+PP  
Sbjct: 242 YFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQ 301

Query: 297 GASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFT 356
           GA IVA  L D  ++ EWT  +K MADRI+SMR +L   L A  TPG W+HI  QIGMF+
Sbjct: 302 GARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFS 361

Query: 357 FTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 406
           FTGLN +QV ++  + HIY+   GRI+M GL++K + ++  +IH AVT++
Sbjct: 362 FTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTKI 411

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

 Score =  318 bits (816), Expect = e-107
 Identities = 157/397 (39%), Positives = 239/397 (60%), Gaps = 1/397 (0%)

Query: 7   FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS 66
           F K+     DPIL +   + +D    K+NL +G Y  E+G    L  V +AE  L     
Sbjct: 2   FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61

Query: 67  RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ 126
               YLP+ GL  +    A L+ GAD P +K  RV T+Q L G+G+L+VGA+FL R++ +
Sbjct: 62  GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121

Query: 127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC 186
             +++  PTW NH  +F  AG  V TY +YD AT G+ F  LL  L+  P+ +IVLLH C
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPC 181

Query: 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246
            HNPTG D T +QW+ + ++++++ L+PF D AYQGF +G ++ DA ++R   + G   L
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240

Query: 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306
           V+ S++K   LYGERVG LS++C+  + A RV  QLK  +R  YSSPP  GA +VA +L 
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLN 300

Query: 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVA 366
           D  +   W  E++ M  RI++MRQ+L   LS      ++ +++ Q GMF++TGL++ QV 
Sbjct: 301 DEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVD 360

Query: 367 FMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
            + +E+ +Y+ + GR+ +AGL++  V  +  A  A +
Sbjct: 361 RLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

 Score =  318 bits (815), Expect = e-106
 Identities = 216/400 (54%), Positives = 282/400 (70%), Gaps = 2/400 (0%)

Query: 5   SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND 64
           S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VLN VRKAE ++   
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61

Query: 65  QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124
           +   KEYLPI GL DF + SA+L LG +S A K  R  TVQ +SGTGSLRVGA FL R +
Sbjct: 62  KM-DKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 120

Query: 125 H-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 183
                +Y+P+P+WGNH  +F  AGL ++ YRYYDP T  L+F G +ED+   P  +I+LL
Sbjct: 121 KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILL 180

Query: 184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243
           HACAHNPTGVDP  EQW+++  +++ + LL +FD AYQGFASG ++ DA ++R F+  G 
Sbjct: 181 HACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240

Query: 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT 303
           + +++QSYAKNMGLYGER GA +++C+  + A RVESQLK++IRPMYS+PP++GA I + 
Sbjct: 241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASL 300

Query: 304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSE 363
           IL    + KEW +E+K MADRIISMR QL   L   G+  +W HI  QIGMF FTGL  E
Sbjct: 301 ILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 360

Query: 364 QVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
           QV  +TKE+ IYMT DGRIS+AG++S  V +L  AIH   
Sbjct: 361 QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

 Score =  315 bits (808), Expect = e-105
 Identities = 170/408 (41%), Positives = 244/408 (59%), Gaps = 7/408 (1%)

Query: 3   SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV 62
           S ++F  I   P D + G+   Y +D    K++LG+GAYR + GKP VL  V+ AE+L+ 
Sbjct: 1   SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIH 60

Query: 63  NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122
           ND S   EYL I GL      +AK+I G  S A++++RV +VQ LSGTG+L + A+F ++
Sbjct: 61  NDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSK 120

Query: 123 HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL 182
            +    +Y+ +PTW NH  +F   GL   TY Y+   T+ L+  G L  ++ AP G+I +
Sbjct: 121 FFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFV 180

Query: 183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG 242
           LH+CAHNPTG+DPT EQW QI   + SK  +  FD+AYQGFA+G LD DA +VR+ V   
Sbjct: 181 LHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL 240

Query: 243 G---ECLVAQSYAKNMGLYGERVGALSIVCK----TEDVASRVESQLKLVIRPMYSSPPI 295
                  V QS+AKN G+YGERVG   +        + +   V SQL  +IR   S+PP 
Sbjct: 241 STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPA 300

Query: 296 HGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMF 355
           +GA IVA +L+   + ++W  ++  M+ RI  MR  L D L   GTPG+W HI+ Q GMF
Sbjct: 301 YGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMF 360

Query: 356 TFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
           +FTGL  + V  + + + +Y+ + GR S+AGL+   V ++  AI   V
Sbjct: 361 SFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVV 408

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

 Score =  308 bits (789), Expect = e-103
 Identities = 180/397 (45%), Positives = 243/397 (61%), Gaps = 2/397 (0%)

Query: 7   FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS 66
           F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ +++
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61

Query: 67  RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ 126
             K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++   
Sbjct: 62  -TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV 120

Query: 127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC 186
             +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H C
Sbjct: 121 KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGC 180

Query: 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246
            HNPTG+DPTLEQW+ + QL   KG LP FD AYQGFA G L+ DA+ +R F A   E +
Sbjct: 181 CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELI 239

Query: 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306
           VA SY+KN GLY ERVGA ++V    +   R  SQ+K  IR  YS+PP HGAS+VATIL 
Sbjct: 240 VASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILS 299

Query: 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVA 366
           +  +   W  EL  M  RI  MRQ   + L  +G   D+S IIKQ GMF+F+GL  EQV 
Sbjct: 300 NDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVL 359

Query: 367 FMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403
            + +E+ +Y  + GR+++AG++   +  L +AI A +
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

 Score =  297 bits (760), Expect = 2e-98
 Identities = 139/396 (35%), Positives = 205/396 (51%), Gaps = 5/396 (1%)

Query: 6   VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ 65
           + G +     D IL +   +  D    K++LGVG Y+   G   ++  V  AEQ ++  +
Sbjct: 1   MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE 60

Query: 66  SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH 125
           +  K Y  + G  +F K   +LILG            T+  + GTG+LR   E       
Sbjct: 61  T-TKTYAGLSGEPEFQKAMGELILGDGLK---SETTATLATVGGTGALRQALELARMANP 116

Query: 126 QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185
            L +++  PTW NH  +    GL V+TYRY+D  TRG++F+G+  DL AA  G +VLLH 
Sbjct: 117 DLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHG 176

Query: 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245
           C HNPTG + TL+QW +I  ++   G LP  D AYQGF    L+ DA   R+  +   E 
Sbjct: 177 CCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGD-GLEEDAAGTRLIASRIPEV 235

Query: 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATIL 305
           L+A S +KN G+Y ER G L  +C         +  +  + R  YS PP HGA IV+T+L
Sbjct: 236 LIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVL 295

Query: 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQV 365
               +  +W  EL+A+   ++ +R+QL   L        +  + +  GMF+  G   EQV
Sbjct: 296 TTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQV 355

Query: 366 AFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHA 401
             + +E+ IYM  D RI++AGL+  T+P L  AI  
Sbjct: 356 KRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIE 391

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 64.5 bits (156), Expect = 6e-12
 Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 5/142 (3%)

Query: 128 TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA 187
            + IP P + ++     LAG        Y+     LN   L    +        L+    
Sbjct: 112 EVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELK---KYVTDKTRALIINSP 168

Query: 188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLV 247
            NPTG   T +  E+I   +    L+   D  Y+ F     DA   S+          + 
Sbjct: 169 CNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYD--DARHYSIASLDGMFERTIT 226

Query: 248 AQSYAKNMGLYGERVGALSIVC 269
              ++K   + G R+G ++   
Sbjct: 227 VNGFSKTFAMTGWRLGFVAAPS 248

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 52.5 bits (125), Expect = 4e-08
 Identities = 43/257 (16%), Positives = 83/257 (32%), Gaps = 28/257 (10%)

Query: 128 TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA 187
            + IP P W ++P++  LA  +             ++ + + + +        +L+    
Sbjct: 116 EVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT---PKTKLLVFNTP 172

Query: 188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLV 247
            NPTG+  T ++   I Q+    GL    D  Y+       DA   S+     +  E  V
Sbjct: 173 SNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYD--DAQHLSIGAASPEAYERSV 230

Query: 248 A-QSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306
               +AK   + G RVG L+               +K   +    S            + 
Sbjct: 231 VCSGFAKTYAMTGWRVGFLAG----------PVPLVKAATKIQGHSTSNVCTFAQYGAIA 280

Query: 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTF-----TGLN 361
                ++    ++ M       R+ + DAL+A                + F     TG +
Sbjct: 281 AYENSQDC---VQEMLAAFAERRRYMLDALNAM---PGLECPKPDGAFYMFPSIAKTGRS 334

Query: 362 SEQVA-FMTKEYHIYMT 377
           S      +  ++ +   
Sbjct: 335 SLDFCSELLDQHQVATV 351

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 48.6 bits (115), Expect = 7e-07
 Identities = 35/255 (13%), Positives = 67/255 (26%), Gaps = 27/255 (10%)

Query: 128 TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA 187
            + +  P W ++P++   AG  V             + + +    RA       L+    
Sbjct: 117 EVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVR---RAITPRTKALVVNSP 173

Query: 188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLV 247
           +NPTG     E  E + +L          D  Y+         + +            L 
Sbjct: 174 NNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY-----EGEHFSPGRVAPEHTLT 228

Query: 248 AQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD 307
               AK   + G R+G              V   +  V R   +SP           L +
Sbjct: 229 VNGAAKAFAMTGWRIGYACG-------PKEVIKAMASVSRQSTTSPDTIAQWATLEALTN 281

Query: 308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTF-----TGLNS 362
               + +    +    R   +  +   AL           +      +          + 
Sbjct: 282 QEASRAFVEMAREAYRRRRDLLLEGLTAL-------GLKAVRPSGAFYVLMDTSPIAPDE 334

Query: 363 EQVAFMTKEYHIYMT 377
            + A    E  + + 
Sbjct: 335 VRAAERLLEAGVAVV 349

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	407
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	100.0
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	100.0
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	100.0
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	100.0
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	100.0
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	100.0
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	100.0
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	100.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	100.0
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	100.0
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	100.0
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	100.0
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	100.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	100.0
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	100.0
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	100.0
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	100.0
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	100.0
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	100.0
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	100.0
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.92
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.92
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.91
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.9
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.9
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.9
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.88
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.87
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.87
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.84
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.82
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.82
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.81
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.81
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.81
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.8
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.8
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.8
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.8
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.79
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.79
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.79
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.78
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.78
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.77
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.76
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.75
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.74
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.73
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.73
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.73
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.72
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.72
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.72
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.72
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.72
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.71
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.71
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.7
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.7
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.7
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.69
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.67
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.67
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.66
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.66
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.66
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.65
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.64
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.64
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.62
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.62
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.6
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.57
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.42
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.29
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.14
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	98.85
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.67
d1jaka1	356	beta-N-acetylhexosaminidase {Streptomyces plicatus	84.11
d2gjxa1	362	beta-hexosaminidase A {Human (Homo sapiens) [TaxId	82.08

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=100.00  E-value=5.5e-58  Score=436.88  Aligned_cols=399  Identities=42%  Similarity=0.762  Sum_probs=338.8

Q ss_pred             cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      ++|+++...|+++|+++++.+++++++++|||++|.++|++|.+++.+.++++...+..+....++|.|..|.++||+++
T Consensus         3 ~~~~~~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~ai   82 (412)
T d1yaaa_           3 TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNA   82 (412)
T ss_dssp             TTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred             ChhhcCCcCCCChHHHHHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHH
Confidence            59999999999999999999999888999999999999999988888888888777764455677899999999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      ++++++.++....++.++..++.|++.++..+..+...+.+||.|++++|+|+.|...++.+|.+++.+|+.++.++..+
T Consensus        83 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~  162 (412)
T d1yaaa_          83 AKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLD  162 (412)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEEC
T ss_pred             HHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceeccccccccccccc
Confidence            99998877665555666664455666666666545556779999999999999999999999999999999877788889


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH---HHHc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM---FVAD  241 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~---~~~~  241 (407)
                      .+.+.+.+...++...++++++||||||++++.+++++|+++|+++++++|+||+|.++.+++..........   ....
T Consensus       163 ~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~  242 (412)
T d1yaaa_         163 LNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST  242 (412)
T ss_dssp             HHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT
T ss_pred             chhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhcccc
Confidence            9999988876656666677799999999999999999999999999999999999999999753222222211   1234


Q ss_pred             CCcEEEEEecCccccccCCCcceeEEeecCh------hhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHH
Q 015435          242 GGECLVAQSYAKNMGLYGERVGALSIVCKTE------DVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWT  315 (407)
Q Consensus       242 ~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  315 (407)
                      .++++++.|+||.++++|+|+||+  +++++      +..+.+........+..+.+++.++|.++..++.+....++|.
T Consensus       243 ~~~~i~~~s~SK~~~~~G~RiG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  320 (412)
T d1yaaa_         243 VSPVFVCQSFAKNAGMYGERVGCF--HLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWH  320 (412)
T ss_dssp             TCCEEEEEECTTTSCCGGGCEEEE--EEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHH
T ss_pred             CCCeEEEEecCCccccCcCceEEE--EEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHH
Confidence            578999999999999999999999  45532      2233334444445566677999999999999999999888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHH
Q 015435          316 LELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHL  395 (407)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~  395 (407)
                      ++++.++++++++++.+.+.|++.+.+..|.++.+++|||.|++++.+++.++++++||.+.||+||++++++++.++.+
T Consensus       321 ~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls~e~~~~L~~e~~V~~~~g~Ris~~g~~~~~i~~l  400 (412)
T d1yaaa_         321 KDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYV  400 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCcCHHHHHHHHHhCCEEECCCCEEEeccCCHHHHHHH
Confidence            99999999999999999999999887766888999999999999999999999999999999999999988899999999


Q ss_pred             HHHHHHHHHh
Q 015435          396 TDAIHAAVTR  405 (407)
Q Consensus       396 ~~~l~~~l~~  405 (407)
                      .++|+++++.
T Consensus       401 ~~ai~~v~k~  410 (412)
T d1yaaa_         401 AKAIDEVVRF  410 (412)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999874

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=100.00  E-value=6.7e-58  Score=435.30  Aligned_cols=397  Identities=54%  Similarity=0.927  Sum_probs=332.8

Q ss_pred             cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      ++|..+...|+++|+++++.+++++++++|||++|.++|++|.+++.+.++++...+. +....++|+|+.|+++||+++
T Consensus         2 ~~~~~~~~~p~d~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~-~~~~~~~Y~~~~G~~~lr~ai   80 (401)
T d7aata_           2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIA-AKKMDKEYLPIAGLADFTRAS   80 (401)
T ss_dssp             CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHH-HTTCCCCCCCTTCCHHHHHHH
T ss_pred             CccccCCCCCCChHHHHHHHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHh-hCCCCCCCCCCCCCHHHHHHH
Confidence            4899999999999999999999888899999999999899998877788887777665 234456899999999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHH-HhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFL-ARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~-~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      ++++.+.++....+++|+..++.++++++.++..++ ..+++||+|++++|+|++|...++.+|++++.+|+.++.++..
T Consensus        81 a~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~  160 (401)
T d7aata_          81 AELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSL  160 (401)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEE
T ss_pred             HHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEeccccccccc
Confidence            999988887777778888743445555555543333 3467999999999999999999999999999999987777888


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      +++.+.+.+....+...++++++||||||.+++.+++++|+++|++|++++|+||+|.++.+++..........+....+
T Consensus       161 ~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  240 (401)
T d7aata_         161 DFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI  240 (401)
T ss_dssp             CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred             cHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhc
Confidence            99999988865434444555599999999999999999999999999999999999999999753223333333445567


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChh--hHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTED--VASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      +++++.|+||.++++|+|+||+  +++...  ...++...+....+..+.+++.+.|.++...+.+..+..+|.+..+..
T Consensus       241 ~~~~~~s~sk~~~~~G~RiG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  318 (401)
T d7aata_         241 DVVLSQSYAKNMGLYGERAGAF--TVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGM  318 (401)
T ss_dssp             CCEEEEECTTTSCCGGGCEEEE--EEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccceeEeccccceeecccccee--ecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            8899999999999999999999  455332  223344444444555666889999999999999998888888999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHH
Q 015435          322 ADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHA  401 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~  401 (407)
                      +++++++++.+.+.|++.+.+..+.+..+++|||.|++++.+++.+|++++||.+.||+|||++.+++++|++++++|.+
T Consensus       319 ~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~gV~~~pg~Ris~a~~~~~~i~~la~ai~~  398 (401)
T d7aata_         319 ADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQ  398 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCCHHHHHHHHHhCCEEECCCcEEEeccCCHHHHHHHHHHHHH
Confidence            99999999999999999887666788899999999999999999999999999999999999998899999999999998


Q ss_pred             HHH
Q 015435          402 AVT  404 (407)
Q Consensus       402 ~l~  404 (407)
                      +++
T Consensus       399 v~k  401 (401)
T d7aata_         399 VTK  401 (401)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            864

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=100.00  E-value=1e-57  Score=435.61  Aligned_cols=403  Identities=50%  Similarity=0.854  Sum_probs=340.7

Q ss_pred             cccccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHH
Q 015435            3 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNK   82 (407)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~   82 (407)
                      .+++|.++.+.|+++|++++..+++++++++|||++|.+.|++|.+.+.+.++++...+..+....++|.|..|+++||+
T Consensus         2 ~~s~~~~~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lre   81 (412)
T d1ajsa_           2 PPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRT   81 (412)
T ss_dssp             CCCTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred             CcChhhhCCcCCCChHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHH
Confidence            45699999999999999999999988889999999999989999887778888887777534455678999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-----hcCCCeEEecCCCCCChHHHHhhcCceeeEEE-ee
Q 015435           83 LSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-----HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYR-YY  156 (407)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-----~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~-~~  156 (407)
                      ++++++++.++..++.+++.+++|.|+++++..+..++..     +++||+|++++|+|++|...++.+|++.+.++ ..
T Consensus        82 aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~  161 (412)
T d1ajsa_          82 CASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYW  161 (412)
T ss_dssp             HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECE
T ss_pred             HHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeeccc
Confidence            9999998888777777888776688888888776544432     46999999999999999999999999876554 44


Q ss_pred             cCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHH
Q 015435          157 DPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR  236 (407)
Q Consensus       157 ~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~  236 (407)
                      ++..+..|++.+++.+....++..++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++.+....+..
T Consensus       162 ~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~  241 (412)
T d1ajsa_         162 DTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIR  241 (412)
T ss_dssp             ETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred             ccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhh
Confidence            55566789988888776544555666669999999999999999999999999999999999999999976433334444


Q ss_pred             HHHHcCCcEEEEEecCccccccCCCcceeEEeecC--hhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhH
Q 015435          237 MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKT--EDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEW  314 (407)
Q Consensus       237 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  314 (407)
                      ......+..+++.|+||.++++|+|+||+.  ++.  .+...++...+.........+++..+|.++..++.+....++|
T Consensus       242 ~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (412)
T d1ajsa_         242 YFVSEGFELFCAQSFSKNFGLYNERVGNLT--VVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEW  319 (412)
T ss_dssp             HHHHTTCCEEEEEECTTTSCCGGGCEEEEE--EECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHH
T ss_pred             hhhhhcccccccccccccccCCCCCccccc--cchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHH
Confidence            445667889999999999999999999994  443  3333444555555555666788999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhH
Q 015435          315 TLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPH  394 (407)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~  394 (407)
                      .++++.++++++++++.+.+.|+..+.+..|.++.+++|||.|++++.+++.++++++||.+.||+||++++++++++++
T Consensus       320 ~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~~~v~~L~~e~gV~~vpg~Ri~~ag~~~~~i~~  399 (412)
T d1ajsa_         320 TGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDY  399 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCCHHHHHHHHHhCCEEEeCCCeEEeccCCHHHHHH
Confidence            88999999999999999999999998776688888999999999999999999999999999999999998889999999


Q ss_pred             HHHHHHHHHHhhC
Q 015435          395 LTDAIHAAVTRMG  407 (407)
Q Consensus       395 ~~~~l~~~l~~~~  407 (407)
                      ++++|.+++++++
T Consensus       400 ~a~aI~~av~~~~  412 (412)
T d1ajsa_         400 VATSIHEAVTKIQ  412 (412)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999875

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.2e-57  Score=429.18  Aligned_cols=395  Identities=39%  Similarity=0.705  Sum_probs=330.4

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      ||.++...|.++|++++..+++++++++|||++|.+.|++|.++..+.+.++...+.++....++|+|..|+++||++++
T Consensus         1 ~~~~~~~~~~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia   80 (397)
T d3tata_           1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA   80 (397)
T ss_dssp             CCCCCCCCCCCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHH
T ss_pred             CcccCCCCCCCcHHHHHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHH
Confidence            68999999999999999999988888999999999988899766678888888777644556778999999999999999


Q ss_pred             HHHhCCCCCCCCCCceEEeecCCcccHHHH--HHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           86 KLILGADSPAIKDNRVTTVQCLSGTGSLRV--GAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~--~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      +++.+.++..+++++++.  +.+++++...  ...+...+.+||+|++++|+|++|...++.+|.+++.+|+.++.++..
T Consensus        81 ~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~  158 (397)
T d3tata_          81 PLLFGADHPVLKQQRVAT--IQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGV  158 (397)
T ss_dssp             HHHTCSSCHHHHTTCEEE--CCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSC
T ss_pred             HHHhhccCCcCCcCcEEE--ecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhcccc
Confidence            999888777777899988  6666554332  222344567999999999999999999999999999999976777788


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      +.+++.+.+...+.+..++++++||||||.+++.+++++|+++|++|++++|+||+|.++.+++ +.............+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~~~  237 (397)
T d3tata_         159 RFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGL  237 (397)
T ss_dssp             CHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCH-HHHHHHHHHHHTTTC
T ss_pred             chHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCC-cccchhhhhhhhcCC
Confidence            8898888877555556666669999999999999999999999999999999999999999863 112223333344567


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      +++++.|+||.++++|+|+||+..-....+...++.............+++...|.++...+.+.....+|.+.++..++
T Consensus       238 ~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  317 (397)
T d3tata_         238 PALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRT  317 (397)
T ss_dssp             CCEECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            89999999999999999999994222223334445555555555566688899999999999998888889899999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHHH
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +++++++.+.+.|...+.+..|.+..+++|+|.|++++.+++.++++++||.+.||+||++++++++++++++++|.+++
T Consensus       318 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~~V~l~~g~Ri~~a~~~~~~i~~~~~ai~~v~  397 (397)
T d3tata_         318 RILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             HHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCCHHHHHHHTTTTCEECCSSSCCBTTSCCTTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcCHHHHHHHHHhCCEEeCCCCEEEeccCCHHHHHHHHHHHHHhC
Confidence            99999999999998887665688889999999999999999999999999999999999999889999999999998763

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-56  Score=424.31  Aligned_cols=394  Identities=45%  Similarity=0.789  Sum_probs=314.7

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      ||.++.+.|+++|++++.++++++++++|||++|.++|++|.+++.+.+.++...+. +....++|+|..|+++||++++
T Consensus         1 ~f~~~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~-~~~~~~~Y~p~~G~~~lR~aia   79 (396)
T d2q7wa1           1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLL-ENETTKNYLGIDGIPEFGRCTQ   79 (396)
T ss_dssp             -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHH-HHCCCCCCCCTTCCHHHHHHHH
T ss_pred             CccccccCCCChHHHHHHHHhccCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHh-hCCCCCCCCCCcCCHHHHHHHH
Confidence            689999999999999999998877888999999999999998877777877766665 2345678999999999999999


Q ss_pred             HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435           86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF  165 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  165 (407)
                      +++++.++....++.+..++|.|+++++.++..++..+.+||.|++++|+|++|...+..+|.+++.+++..+.++..+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~  159 (396)
T d2q7wa1          80 ELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDF  159 (396)
T ss_dssp             HHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECH
T ss_pred             HHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEeccccccccccccc
Confidence            99988777666667666555888888887776566667899999999999999999999999999999998777777788


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      .++++...+...+..++++++||||||.+++.+++++|+++|++|++++|+||+|.++.+++. .............+..
T Consensus       160 ~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~  238 (396)
T d2q7wa1         160 DALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE-EDAEGLRAFAAMHKEL  238 (396)
T ss_dssp             HHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH-HHTHHHHHHHHHCSCE
T ss_pred             chHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCc-cCchHhhhhhhhcccc
Confidence            888887765555566677799999999999999999999999999999999999999998741 2222333345567889


Q ss_pred             EEEEecCccccccCCCcceeEEeecChh--hHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTED--VASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      +++.|+||.++++|+|+||+  +++...  ....+.............+++..+|.++..++.+......|.++++.+++
T Consensus       239 ~~~~s~sk~~~~~G~R~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  316 (396)
T d2q7wa1         239 IVASSYSKNFGLYNERVGAC--TLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQ  316 (396)
T ss_dssp             EEEEECTTTTTCGGGCCEEE--EEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-C
T ss_pred             cccccccccccccCCCcccc--ccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            99999999999999999999  465432  22223333333444556688999999999999988877788899999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHHH
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~l  403 (407)
                      +++++++.+.+.|++.+.+..+.++.+++|+|.|++++.+++.++++++||.+.|||||+++++++++|++++++|.+++
T Consensus       317 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~~e~~~~L~~e~gV~~~~g~Ri~~a~l~~~~i~~~~~ai~~v~  396 (396)
T d2q7wa1         317 RIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCCHHHHHHHHHhCCEEECCCCEEEecCCCHHHHHHHHHHHHHhC
Confidence            99999999999999998766678888889999999999999999999999999999999999889999999999998874

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=1.2e-54  Score=412.07  Aligned_cols=390  Identities=35%  Similarity=0.642  Sum_probs=324.6

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA   85 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a   85 (407)
                      ||+.+.+.|+++|++++.++++++++++|||++|.+.|++|+|++.+.+.++...+. +....++|.|..|+++||++++
T Consensus         1 ~~~~~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~-~~~~~~~Y~p~~G~~~lr~aia   79 (394)
T d2ay1a_           1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRML-ETETTKTYAGLSGEPEFQKAMG   79 (394)
T ss_dssp             CGGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHH-HHCCCCCCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHh-hCCCCCCCCCCCCCHHHHHHHH
Confidence            578899999999999999999888889999999999999998888888888877776 2334578999999999999999


Q ss_pred             HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435           86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF  165 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  165 (407)
                      +++++....... ...++  |.|++++..+...++..+.+||.|++++|+|++|...++.+|.+++.+++.++.++..+.
T Consensus        80 ~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~  156 (394)
T d2ay1a_          80 ELILGDGLKSET-TATLA--TVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDF  156 (394)
T ss_dssp             HHHHGGGCCGGG-EEEEE--EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECH
T ss_pred             HHHhcccccccc-cccee--ccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccc
Confidence            999765544322 33444  666666665555466667899999999999999999999999999999997777777888


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +++++.....++.+.++++++||||||.+++.+++++|+++|++|++++|+||+|.++.+++. ................
T Consensus       157 ~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~  235 (394)
T d2ay1a_         157 EGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASRIPEV  235 (394)
T ss_dssp             HHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHHCSSE
T ss_pred             hhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhccccc-ccchhhhhhhhhcccc
Confidence            888888776556667777799999999999999999999999999999999999999998742 1112222223446678


Q ss_pred             EEEEecCccccccCCCcceeEEeecCh--hhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTE--DVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      +++.|+||.++++|+|+||+.  ++..  +....+...+.........+++...|.++...+.+..+.++|.+.++.+++
T Consensus       236 ~~~~s~sk~~~~~G~R~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  313 (394)
T d2ay1a_         236 LIAASCSKNFGIYRERTGCLL--ALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRS  313 (394)
T ss_dssp             EEEEECTTTTTCGGGCEEEEE--EECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCCcccccchh--hchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999994  5432  223333444444445556688888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHH
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~  402 (407)
                      +++++++.+.+.|++.+.+..|.++.+++|||.|++++.+++.++++++||.+.||+||+++++++++++++.++|.++
T Consensus       314 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~~~~~~L~~~~~V~~~~g~Ri~~a~l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         314 GMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCceeeECCCceeEEecCcCHHHHHHHHHhCCEEecCCCEEEecCCCHHHHHHHHHHHHHh
Confidence            9999999999999998766568888999999999999999999999999999999999999989999999988888775

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=9.1e-53  Score=397.74  Aligned_cols=368  Identities=15%  Similarity=0.139  Sum_probs=298.5

Q ss_pred             ccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      +..|+...+++++..+...++  ...+.++|||++|.|   +. +.|+.+++++.+.+.   ....+|+++.|.+++|++
T Consensus         3 ~~~~~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~p---~~-~~p~~v~~a~~~~~~---~~~~~Y~~~~G~~~lR~a   75 (388)
T d1j32a_           3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEP---DF-NTPKHIVEAAKAALE---QGKTRYGPAAGEPRLREA   75 (388)
T ss_dssp             CCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSC---SS-CCCHHHHHHHHHHHH---TTCCSCCCTTCCHHHHHH
T ss_pred             hhhHhhcCCcCHHHHHHHHHHHHHHCCCCeEECCCCCC---CC-CCCHHHHHHHHHHHh---cCCCCCCCCCCCHHHHHH
Confidence            556777777777655543333  234679999999986   54 667777777766665   235679999999999999


Q ss_pred             HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      +++++...++..+++++|++  |+|+++++.+++  ...+.+||+|++++|+|++|...++..|.+++.++...+.++.+
T Consensus        76 ia~~~~~~~g~~~~~~~i~i--t~G~~~al~~~~--~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~  151 (388)
T d1j32a_          76 IAQKLQRDNGLCYGADNILV--TNGGKQSIFNLM--LAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKV  151 (388)
T ss_dssp             HHHHHHHHHCCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCC
T ss_pred             HHHHHHHhcccCCCCceEEE--cCCHHHHHHHHH--HHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCC
Confidence            99999766677788899999  999999999994  44578999999999999999999999999999999866667889


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH-HHcC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF-VADG  242 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~-~~~~  242 (407)
                      |++++++.+.  ++++++++ ++||||||.+++.+++++|+++|+++|++||+||+|..+.+++...  .++... ....
T Consensus       152 d~~~l~~~~~--~~~~~~~~-~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~--~s~~~~~~~~~  226 (388)
T d1j32a_         152 SPEQIRQAIT--PKTKLLVF-NTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQH--LSIGAASPEAY  226 (388)
T ss_dssp             CHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CCGGGSCHHHH
T ss_pred             CHHHHHHhCC--CCCeEEEE-CCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCC--CCHHHhCcccc
Confidence            9999999887  55666665 8999999999999999999999999999999999999998875322  222111 1223


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      +++++++||||.|+++|+|+||+  +++     +.+...+.........+++...|.++...+.+..      +++++.+
T Consensus       227 ~~~i~~~S~SK~~~~~GlRvG~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~------~~~~~~~  293 (388)
T d1j32a_         227 ERSVVCSGFAKTYAMTGWRVGFL--AGP-----VPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQ------DCVQEML  293 (388)
T ss_dssp             HTEEEEEESTTTTTCTTTCCEEE--ECC-----HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCS------HHHHHHH
T ss_pred             cceeEecCChhhhhcchhHeEEE--EEC-----HHHHHHHHHhhhhccccccHHHHHHHhhcccchH------HHHHHHH
Confidence            57999999999999999999999  565     4455555555555556888888988887776553      6688899


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----C-HHHHHHhHhhccEEEcCCC--------eEEecCCC
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----N-SEQVAFMTKEYHIYMTSDG--------RISMAGLS  388 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~~~gi~~~~gg--------Ris~~~~~  388 (407)
                      +.++++++.+.+.|++.+.   +.+..|++|+|.|+.+     + .+++.++++++||.+.||.        ||+++. +
T Consensus       294 ~~~~~~~~~~~~~l~~~~g---~~~~~p~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~-~  369 (388)
T d1j32a_         294 AAFAERRRYMLDALNAMPG---LECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYAT-D  369 (388)
T ss_dssp             HHHHHHHHHHHHHHHTCTT---CBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCS-C
T ss_pred             HHHHHHHHHHHHHHHhCCC---CEecCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeC-C
Confidence            9999999999999998743   7888999999999865     3 3557788888999999972        999985 8


Q ss_pred             CCChhHHHHHHHHHHHhh
Q 015435          389 SKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~~~  406 (407)
                      ++++++++++|+++++.+
T Consensus       370 ~e~l~~al~rl~~~l~~l  387 (388)
T d1j32a_         370 LDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            899999999999999865

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.7e-52  Score=391.38  Aligned_cols=365  Identities=14%  Similarity=0.130  Sum_probs=297.8

Q ss_pred             cccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNK   82 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~   82 (407)
                      .+..|+....++++.++...++  +.++.++|+|++|.|   +. |.|+.+.+++.+.+.   ....+|+++.|.++||+
T Consensus         3 ~~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p---~~-~~p~~i~~a~~~~~~---~~~~~Y~~~~G~~~lR~   75 (382)
T d1b5pa_           3 GLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEP---DF-DTPEHVKEAARRALA---QGKTKYAPPAGIPELRE   75 (382)
T ss_dssp             CCCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSC---SS-CCCHHHHHHHHHHHH---TTCCSCCCTTCCHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCCCCeEECCCCCC---CC-CCCHHHHHHHHHHHh---cCCcCCCCCCCCHHHHH
Confidence            3667888888888877765443  345789999999986   54 667777777777775   23568999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435           83 LSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG  162 (407)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~  162 (407)
                      ++++++...++..+++++|++  |+|+++++..++  ...+.+||.|++++|+|.+|...++.+|.+++.+++.+++++.
T Consensus        76 ~ia~~~~~~~~~~~~~~~i~i--t~G~~~al~~~~--~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~  151 (382)
T d1b5pa_          76 ALAEKFRRENGLSVTPEETIV--TVGGSQALFNLF--QAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFV  151 (382)
T ss_dssp             HHHHHHHHTTCCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTC
T ss_pred             HHHhhhhhhccccccccccee--cCCHHHHHHHHH--HHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccC
Confidence            999999777788888999999  999999999995  4458899999999999999999999999999999986666788


Q ss_pred             cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      +|++++++.+.  ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++....  +   .....
T Consensus       152 ~d~~~l~~~~~--~~~~~i~~-~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~--~---~~~~~  223 (382)
T d1b5pa_         152 PDPERVRRAIT--PRTKALVV-NSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFS--P---GRVAP  223 (382)
T ss_dssp             CCHHHHHTTCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCC--G---GGTCT
T ss_pred             CCHHHHHHhCC--CCCeEEEE-CCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCC--H---HHcCC
Confidence            99999998876  55566665 89999999999999999999999999999999999999998753221  1   12345


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      +++++++|+||.|+++|+|+||+  +++     +.+.+.+.........+++...+.++...+.+..   .+..+.+..+
T Consensus       224 ~~~i~~~s~SK~~~~~GlR~G~~--~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  293 (382)
T d1b5pa_         224 EHTLTVNGAAKAFAMTGWRIGYA--CGP-----KEVIKAMASVSRQSTTSPDTIAQWATLEALTNQE---ASRAFVEMAR  293 (382)
T ss_dssp             TTEEEEEESTTTTTCGGGCCEEE--ECC-----HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHH---HHHHHHHHHH
T ss_pred             CCEEEEecchhhccCcHhheEEE--EEC-----HHHHHHHHHHHHhcccCccccccccccccccccc---chhHHHHHHH
Confidence            78999999999999999999999  566     4455555555555566788888888777776543   2335567788


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CHHHHHHhHhhccEEEcCCC--------eEEecCCCC
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSDG--------RISMAGLSS  389 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~  389 (407)
                      +.++++++.+.+.++..+    +.+..|+||+|.|+++     +...+.++|.++||.+.||.        ||+++. ++
T Consensus       294 ~~~~~~~~~~~~~l~~~g----~~~~~p~gg~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~-~~  368 (382)
T d1b5pa_         294 EAYRRRRDLLLEGLTALG----LKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYAT-SE  368 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHT----CCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCS-CH
T ss_pred             HHHHhhhhHHHHHHhhcC----CeEecCCceEEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEEcC-CH
Confidence            889999999999999888    7888899999999855     45566667777899999972        999985 88


Q ss_pred             CChhHHHHHHHHHH
Q 015435          390 KTVPHLTDAIHAAV  403 (407)
Q Consensus       390 e~i~~~~~~l~~~l  403 (407)
                      |++++++++|++++
T Consensus       369 e~l~~al~rl~~~L  382 (382)
T d1b5pa_         369 ENLRKALERFARVL  382 (382)
T ss_dssp             HHHHHHHHHGGGGC
T ss_pred             HHHHHHHHHHHHhC
Confidence            88999999998753

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.1e-51  Score=389.12  Aligned_cols=366  Identities=17%  Similarity=0.198  Sum_probs=296.4

Q ss_pred             cccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK   86 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~   86 (407)
                      ..|+...+++.|+++......  .+++|||++|.|   +. +.|+.+.+++.+++.   ....+|++..|.++||+++++
T Consensus         3 s~~~~~~~~s~ir~~~~~~~~--~~dvi~l~~g~p---~~-~~p~~v~~~~~~a~~---~~~~~Y~~~~G~~~lr~aia~   73 (388)
T d1gdea_           3 SDRLELVSASEIRKLFDIAAG--MKDVISLGIGEP---DF-DTPQHIKEYAKEALD---KGLTHYGPNIGLLELREAIAE   73 (388)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHH--CTTCEECCCCSC---CS-CCCHHHHHHHHHHHH---TTCCSCCCTTCCHHHHHHHHH
T ss_pred             hhhhhhCCccHHHHHHHHHhC--CCCeEECCCCCC---CC-CCCHHHHHHHHHHHh---cCccCCCCCcCCHHHHHHHHH
Confidence            456666778889888876543  478999999986   44 667677777766665   235679999999999999999


Q ss_pred             HHhCCCC-CCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435           87 LILGADS-PAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF  165 (407)
Q Consensus        87 ~~~~~~~-~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  165 (407)
                      ++....+ ....+++|++  |+|+++++.++  +...+.+||+|++++|+|..|...++.+|.+++.+|+..++++++|+
T Consensus        74 ~~~~~~~~~~~~~~~i~~--t~G~~~~l~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  149 (388)
T d1gdea_          74 KLKKQNGIEADPKTEIMV--LLGANQAFLMG--LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNV  149 (388)
T ss_dssp             HHHHHHCCCCCTTTSEEE--ESSTTHHHHHH--HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCH
T ss_pred             HHHhhccccCCChheeee--ccCcchHHHHH--HHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCH
Confidence            9843222 2334678999  99999999998  35557899999999999999999999999999999997666789999


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~  245 (407)
                      +++++.+.  ++++++++ ++||||||.+++.+++++|+++|++|+++||+||+|.++.+++..  ..++..+....+++
T Consensus       150 ~~l~~~~~--~~~~~i~~-~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~--~~~~~~~~~~~~~~  224 (388)
T d1gdea_         150 DELKKYVT--DKTRALII-NSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDAR--HYSIASLDGMFERT  224 (388)
T ss_dssp             HHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC--CCCGGGSTTCGGGE
T ss_pred             HHHHHhCc--cCCeEEEE-CCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCC--CCChhhccCCCCeE
Confidence            99999886  55666665 999999999999999999999999999999999999999886532  22222223334689


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI  325 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (407)
                      ++++||||.|+++|+|+||+  +++     ..+...+.........+++...|.++..++.+..    +.++++..++.+
T Consensus       225 i~~~S~SK~~~~~GlR~G~i--i~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~  293 (388)
T d1gdea_         225 ITVNGFSKTFAMTGWRLGFV--AAP-----SWIIERMVKFQMYNATCPVTFIQYAAAKALKDER----SWKAVEEMRKEY  293 (388)
T ss_dssp             EEEEESTTTTTCGGGCCEEE--ECC-----HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHH----HHHHHHHHHHHH
T ss_pred             EEEeCChhhccCccccEEEE--Eee-----ccchhhhhhccccccccccccchhhHHHHHhhcc----chhHHHHHHHHH
Confidence            99999999999999999999  566     4455555555566667888899999988888764    345677888889


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CH-HHHHHhHhhccEEEcCCC----------eEEecCCCC
Q 015435          326 ISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NS-EQVAFMTKEYHIYMTSDG----------RISMAGLSS  389 (407)
Q Consensus       326 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~~~~gg----------Ris~~~~~~  389 (407)
                      +++++.+.+.+...+    +.+..|.+|+|.|+++     +. ++...+++++||.+.||.          ||+++. ++
T Consensus       294 ~~~~~~~~~~l~~~~----~~~~~p~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~-~~  368 (388)
T d1gdea_         294 DRRRKLVWKRLNEMG----LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AY  368 (388)
T ss_dssp             HHHHHHHHHHHHHTT----CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CH
T ss_pred             HHhhhhhhhhhhhcc----ccccCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecC-CH
Confidence            999999999999887    6778899999999855     44 446678888999999861          999985 78


Q ss_pred             CChhHHHHHHHHHHHhh
Q 015435          390 KTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~~  406 (407)
                      +++++++++|++++++.
T Consensus       369 e~l~~al~rL~~~l~e~  385 (388)
T d1gdea_         369 EKLEEAMDRMERVLKER  385 (388)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            89999999999999874

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2.2e-50  Score=382.25  Aligned_cols=369  Identities=14%  Similarity=0.098  Sum_probs=289.9

Q ss_pred             cccccCCCCCchhhhh---HhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            7 FGKIVRAPEDPILGVT---VAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      ..|+.... +.|+++.   +++++ .+.++|+|++|.|.+.+. +.|..+.+++.+.+.   ....+|++..|.++||++
T Consensus         5 s~r~~~~~-~~ir~i~~~a~~l~~-~G~~vi~l~~G~P~~~df-~~p~~i~~a~~~a~~---~~~~~Y~~~~G~~~LR~a   78 (395)
T d1xi9a_           5 SKRALSVE-YAIRDVVLPARELEK-KGIKVIRLNIGDPVKFDF-QPPEHMKEAYCKAIK---EGHNYYGDSEGLPELRKA   78 (395)
T ss_dssp             CHHHHTCC-C-------CHHHHHH-TTCCCEECCCCCGGGTTC-CCCHHHHHHHHHHHH---TTCCSCCCTTCCHHHHHH
T ss_pred             hhccccCc-HHHHHHHHHHHHHHH-CCCCeEECCCCCCCCCCC-CCCHHHHHHHHHHHh---cCCCCCCCCCCCHHHHHH
Confidence            34444442 3455544   33433 468999999998754444 667677777777765   235679999999999999


Q ss_pred             HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      +++++...++..+++++|++  |+|+++++.+++  ...+.+||+|++++|+|+.|...++.+|.+++.++...+.++.+
T Consensus        79 ia~~~~~~~g~~~~~~~i~i--~~G~~~~~~~~~--~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~  154 (395)
T d1xi9a_          79 IVEREKRKNGVDITPDDVRV--TAAVTEALQLIF--GALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQP  154 (395)
T ss_dssp             HHHHHHHHHCCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEE
T ss_pred             HHHhhhhccccccccccccc--ccccchhhhhhh--hhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccc
Confidence            99999766677788899999  999999999984  55578999999999999999999999999999999876777899


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      |++++++.+.  ++++++++ ++||||||.+++.+++++|+++|++|+++||.|++|.++.+++..   .+... ....+
T Consensus       155 d~~~~~~~~~--~~~~~v~l-~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~---~~~~~-~~~~~  227 (395)
T d1xi9a_         155 DIDDIRKKIT--DRTKAIAV-INPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEH---ISPGS-LTKDV  227 (395)
T ss_dssp             CHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCC---CCHHH-HCSSS
T ss_pred             hHHHHHHhhc--ccccEEEe-cCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccc---cchhh-cCCCC
Confidence            9999999886  55666666 999999999999999999999999999999999999999886432   22222 23456


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecC-hhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKT-EDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      ++|+++||||.|+++|+|+||+.  +.+ +.....+....... .....+++.++|.++..++.+..      +++++.+
T Consensus       228 ~vi~~~S~SK~~~~~GlRvG~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~  298 (395)
T d1xi9a_         228 PVIVMNGLSKVYFATGWRLGYMY--FVDPENKLSEVREAIDRL-ARIRLCPNTPAQFAAIAGLTGPM------DYLKEYM  298 (395)
T ss_dssp             CEEEEEESTTTTCCGGGCCEEEE--EECTTCTTHHHHHHHHHH-HHHTCCSCSHHHHHHHHHHHSCC------HHHHHHH
T ss_pred             CEEEEeCcchhcccchhhcEeeE--ecCHHHHHHHHHHHHHHh-hcCCCCcCHHHHHHHHHHhcCCH------HHHHHHH
Confidence            89999999999999999999984  443 33333333333222 23345788889998888887653      6688888


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-------CHHHHHHhHhhccEEEcCCC----------eEEec
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-------NSEQVAFMTKEYHIYMTSDG----------RISMA  385 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~~~~gg----------Ris~~  385 (407)
                      +.++++++++.+.|++.+.   +.+..|++|+|.|+++       +.+++.++++++||.+.||.          ||+++
T Consensus       299 ~~~~~~~~~l~~~L~~~~~---~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~  375 (395)
T d1xi9a_         299 KKLKERRDYIYKRLNEIPG---ISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL  375 (395)
T ss_dssp             HHHHHHHHHHHHHHHTSTT---EECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC
T ss_pred             HHHHHHHHHHHHHHHhCCC---ceecCCCeeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEec
Confidence            9999999999999998864   6788899999999744       34567889999999999862          99998


Q ss_pred             CCCCCChhHHHHHHHHHHHh
Q 015435          386 GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       386 ~~~~e~i~~~~~~l~~~l~~  405 (407)
                      . ++|++++++++|++++++
T Consensus       376 ~-~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         376 P-PIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             S-CHHHHHHHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHHHHHhc
Confidence            5 889999999999999875

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3e-48  Score=365.54  Aligned_cols=360  Identities=16%  Similarity=0.155  Sum_probs=287.3

Q ss_pred             cccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      ..|+..+|.+..+++...++  ..+++++|||++|.|   +. +.|+.+.+++.+.+.   ....+|++..|.++||+++
T Consensus         2 ~~r~~~~~~~~~~~~~~~a~~~~~~G~~vI~l~~G~p---~~-~~p~~i~~~~~~~~~---~~~~~Y~~~~G~~~lR~ai   74 (375)
T d1o4sa_           2 SRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEP---DF-PTPEPVVEEAVRFLQ---KGEVKYTDPRGIYELREGI   74 (375)
T ss_dssp             CHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSC---SS-CCCHHHHHHHHHHHT---TCCCCCCCTTCCHHHHHHH
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHCCCCeEECCCcCC---CC-CCCHHHHHHHHHHHh---cCCcCCCCCcCCHHHHHHH
Confidence            35667777777766655444  235688999999986   43 666677777766664   2356799999999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      ++++...++..+++++|++  |+|+++++.+++  ...+.+||+|++++|+|+.+...+...|...+.++......+.++
T Consensus        75 a~~~~~~~~~~~~~~~i~~--t~G~~~al~~~~--~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (375)
T d1o4sa_          75 AKRIGERYKKDISPDQVVV--TNGAKQALFNAF--MALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPS  150 (375)
T ss_dssp             HHHHHHHHTCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCC
T ss_pred             Hhhhhhccccccccccccc--cCcHHHHHHHHH--HHHhCCCCEEEEccCccccchhhhhccccccccccccccccccch
Confidence            9999666666778899999  999999999984  445789999999999999999999999999999998766667788


Q ss_pred             hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      .+.++....  ++++++++ ++||||||++++.+++++|+++|++|+++||+||+|..+.+++...   ......+..++
T Consensus       151 ~~~~~~~~~--~~~~~~~l-~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~---~~~~~~~~~~~  224 (375)
T d1o4sa_         151 LEEVEGLLV--GKTKAVLI-NSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFT---SILDVSEGFDR  224 (375)
T ss_dssp             HHHHHHTCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCC---CHHHHCSSSTT
T ss_pred             hHHHHHhhc--cCccEEEE-eCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhcccccccccc---ccccccCCCCC
Confidence            888877654  45555555 9999999999999999999999999999999999999888865322   22223455689


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +++++|+||.|+++|+|+||+  +++     ..+...+...........+...+......++..         ....++.
T Consensus       225 ~i~~~S~SK~~~l~G~R~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~  288 (375)
T d1o4sa_         225 IVYINGFSKSHSMTGWRVGYL--ISS-----EKVATAVSKIQSHTTSCINTVAQYAALKALEVD---------NSYMVQT  288 (375)
T ss_dssp             EEEEEESTTTTTCGGGCCEEE--ECC-----HHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC---------CHHHHHH
T ss_pred             EEEEeechhhccCCccccccc--ccc-----ccchhhhhhhhccccccccccchhhhhhhcccc---------hhhhHHH
Confidence            999999999999999999999  465     334444444444555567777777766665543         3445677


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC---CHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChh
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVP  393 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~  393 (407)
                      ++++++.+.+.|++.|    +.+..|.+|+|.|+.+   +.+++.++++++||.+.||.        ||+++. ++++++
T Consensus       289 ~~~r~~~~~~~l~~~g----~~~~~p~gg~f~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~-~~e~l~  363 (375)
T d1o4sa_         289 FKERKNFVVERLKKMG----VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT-SIERLT  363 (375)
T ss_dssp             HHHHHHHHHHHHHHTT----CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHH
T ss_pred             HHHHHHHHHHHHHhcC----ceEecCCccEEEEEECCCCHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcC-CHHHHH
Confidence            8888999999999888    7888899999999866   35667888998999999862        999985 889999


Q ss_pred             HHHHHHHHHHH
Q 015435          394 HLTDAIHAAVT  404 (407)
Q Consensus       394 ~~~~~l~~~l~  404 (407)
                      +++++|+++++
T Consensus       364 ~al~rl~~~l~  374 (375)
T d1o4sa_         364 EALDRIEDFLN  374 (375)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999999885

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=100.00  E-value=4.4e-48  Score=369.33  Aligned_cols=372  Identities=13%  Similarity=0.086  Sum_probs=289.6

Q ss_pred             cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      ++..|++..+++......+....   .++|||++|.|   +. +.|..+.+++.+.+.+.....++|++..|.+++|+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~---~~~I~L~~G~P---d~-~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReai   75 (418)
T d2r5ea1           3 DLPKRYQGSTKSVWVEYIQLAAQ---YKPLNLGQGFP---DY-HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQAL   75 (418)
T ss_dssp             CCCGGGTTCCCCHHHHHHHHHHH---HCCEECSSSCC---SS-CCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHH
T ss_pred             chhhhhcCCCCCHHHHHHHHhcC---CCCEEccCCCC---CC-CCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHH
Confidence            46678888888877666654432   47899999986   54 5566677777676652223456899999999999999


Q ss_pred             HHHHhCCCCCCCCC-CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCC---
Q 015435           85 AKLILGADSPAIKD-NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPAT---  160 (407)
Q Consensus        85 a~~~~~~~~~~~~~-~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~---  160 (407)
                      |+++...++..+++ ++|++  |+|+++++.+++  ...+.+||.|++++|+|+.+...+...|.+++.+++..+..   
T Consensus        76 A~~~~~~~g~~~~p~~~I~i--t~G~~~al~~~~--~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~  151 (418)
T d2r5ea1          76 SKLYSQLVDRTINPMTEVLV--TVGAYEALYATI--QGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGT  151 (418)
T ss_dssp             HHHHHHHHTSCCCTTTSEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSC
T ss_pred             HHHHHHHhCCCCCccceEEE--cCCCchhhhhhh--hhccccccceeccccccchhhHHHHHcCCeEEEEEecccccccc
Confidence            99996555656664 79999  999999999994  44588999999999999999999999999999999853321   


Q ss_pred             -----CCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH
Q 015435          161 -----RGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV  235 (407)
Q Consensus       161 -----~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~  235 (407)
                           +..+++++.+...  +.++++++ ++||||||.+++.+++++|+++|++||++||+||+|..+.+++..  ..++
T Consensus       152 ~~~~~~~~~~~~~~~~~~--~~~~~~~i-~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~--~~s~  226 (418)
T d2r5ea1         152 ISSADWVLDNNELEALFN--EKTKMIII-NTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFE--HIRI  226 (418)
T ss_dssp             EEGGGEECCHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCG
T ss_pred             hhhhhhhhhHHHHhhhhh--ccccceec-CCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCc--cccc
Confidence                 2346676666554  44555555 999999999999999999999999999999999999999987532  2222


Q ss_pred             HHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhh-HHhH
Q 015435          236 RMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTM-YKEW  314 (407)
Q Consensus       236 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~  314 (407)
                      ..+.....+++++.|+||.++++|+|+||+  +++     +.+...+.........+++.+.|.++...+..... ....
T Consensus       227 ~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~--~~~-----~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~  299 (418)
T d2r5ea1         227 CTLPGMWERTITIGSAGKTFSLTGWKIGWA--YGP-----EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP  299 (418)
T ss_dssp             GGSTTTGGGEEEEEEHHHHTTCGGGCCEEE--ESC-----HHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTST
T ss_pred             cccccccceeeeeecCCccccCCCcccccc--ccc-----chhhhhhhhcccccccccccchhhhccccccccccccccc
Confidence            223344578999999999999999999999  566     45555566555555667888888877766542211 0111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----------------CHHHHHHhHhhccEEEc
Q 015435          315 TLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----------------NSEQVAFMTKEYHIYMT  377 (407)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~gi~~~  377 (407)
                      .+++++++++++++++.+.+.|++.|    +.+..|+||||+|+++                 +.+++..+++++||.+.
T Consensus       300 ~~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~  375 (418)
T d2r5ea1         300 ECYFNSISGELMAKRDYMASFLAEVG----MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGI  375 (418)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHTT----CEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECB
T ss_pred             hhhHHHHHHHHHHhhhhHHhhHhhcC----CcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEe
Confidence            25678889999999999999999988    7889999999999743                 23557788899999999


Q ss_pred             CC-------------C--eEEecCCCCCChhHHHHHHHHHHH
Q 015435          378 SD-------------G--RISMAGLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       378 ~g-------------g--Ris~~~~~~e~i~~~~~~l~~~l~  404 (407)
                      ||             +  |||++. ++|++++++++|++++.
T Consensus       376 PG~~F~~~~~~~~g~~~iRis~~~-~~e~l~~a~~rl~~~lg  416 (418)
T d2r5ea1         376 PPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAEILRKWKG  416 (418)
T ss_dssp             CGGGGSCGGGHHHHTTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred             CchhhCCCCCccCCCCEEEEEecC-CHHHHHHHHHHHHHHHc
Confidence            96             1  999975 88899999999998763

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=8e-48  Score=367.04  Aligned_cols=375  Identities=16%  Similarity=0.171  Sum_probs=277.4

Q ss_pred             cCCCCCchhhhhHhhhhc-CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHh
Q 015435           11 VRAPEDPILGVTVAYNKD-TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLIL   89 (407)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~   89 (407)
                      ++..-+++..+...++.. +.+++|||++|.|.-+...+.+...++++.+.+.  ....++|+|..|.++||+++|+++.
T Consensus         9 ~~~~~~pir~~~~~~~~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~LReaia~~~~   86 (412)
T d1bw0a_           9 AGLVFNPIRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAID--SQECNGYFPTVGSPEAREAVATWWR   86 (412)
T ss_dssp             HHTCCCHHHHHHHTCCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHH--TTCSSSCCCTTCCHHHHHHHHHHHH
T ss_pred             ccCCccHHHHHHHhcCCCCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhh--CCCCCCCCCCcCCHHHHHHHHHHHH
Confidence            334445666666555533 3457999999986111111123334455545554  3456789999999999999999994


Q ss_pred             CC------CCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           90 GA------DSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        90 ~~------~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      ..      .+..+++++|++  |+|+++++.+++  ...+++||+|++++|+|+.|...++.+|.+++.+++..+.++..
T Consensus        87 ~~~~~~~~~~~~~~~~~I~i--t~G~~~al~~~~--~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  162 (412)
T d1bw0a_          87 NSFVHKEELKSTIVKDNVVL--CSGGSHGILMAI--TAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEA  162 (412)
T ss_dssp             HHHCCSTTTGGGCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEE
T ss_pred             HhcCcccccCCCCCCCeEEE--ecccccchhhhh--hhhhccccceeeeeccchhhhhhhhccCccccccccccccccch
Confidence            33      234567899999  999999999994  45588999999999999999999999999999999976666788


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH-HHHHHcC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV-RMFVADG  242 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~-~~~~~~~  242 (407)
                      +++++++.+.  +.++++++ ++||||||.+++.+++++|+++|++|+++||+||+|.++.+++..+..... ....+..
T Consensus       163 ~~~~l~~~~~--~~~~~~~l-~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
T d1bw0a_         163 DLDEIRRLKD--DKTKLLIV-TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETT  239 (412)
T ss_dssp             CHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCS
T ss_pred             hhHHHHhhhh--cccccccc-ccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccc
Confidence            9999998776  55566666 999999999999999999999999999999999999999987643211110 0001223


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhH-HHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVA-SRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM  321 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (407)
                      ..+++++|+||.++++|+|+||+  +++++... ..+.......... ..+++...+..+...+.+..     .+++.++
T Consensus       240 ~~~~~~~s~SK~~~~~G~RvG~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  311 (412)
T d1bw0a_         240 VPRVILGGTAKNLVVPGWRLGWL--LYVDPHGNGPSFLEGLKRVGML-VCGPCTVVQAALGEALLNTP-----QEHLDQI  311 (412)
T ss_dssp             CCEEEEEESTTTTSCGGGCCEEE--EEECTTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSSC-----HHHHHHH
T ss_pred             cccccccccCccCccCCCCcccc--cccchhhcchhhhhhhcccccc-ccCCchhhhhhccccccccc-----ccccccc
Confidence            56899999999999999999999  56643221 2223323222222 23455555554444443221     2678889


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC----------CHHHHHHhHhhccEEEcCC------C--eEE
Q 015435          322 ADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----------NSEQVAFMTKEYHIYMTSD------G--RIS  383 (407)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~g------g--Ris  383 (407)
                      +++++++++.+.+.|.+...   +.+..|+||+|+|+.+          +.+++.++++++||.+.||      |  ||+
T Consensus       312 ~~~~~~~r~~~~~~l~~~~g---~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis  388 (412)
T d1bw0a_         312 VAKIEESAMYLYNHIGECIG---LAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLT  388 (412)
T ss_dssp             HHHHHHHHHHHHHHHTTSTT---EEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE
T ss_pred             cchhHHHHHHHHHHHHHhcC---ceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEE
Confidence            99999999999999987532   7888999999999743          2456788999899999996      2  999


Q ss_pred             ecCCCCCChhHHHHHHHHHHHhh
Q 015435          384 MAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       384 ~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++. +++++++++++|++++++.
T Consensus       389 ~~~-~~e~l~eal~Rl~~~l~~~  410 (412)
T d1bw0a_         389 TTR-PVEVYREAVERIKAFCQRH  410 (412)
T ss_dssp             CCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             EcC-CHHHHHHHHHHHHHHHHhc
Confidence            986 8899999999999999864

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-48  Score=368.86  Aligned_cols=368  Identities=15%  Similarity=0.154  Sum_probs=286.7

Q ss_pred             cccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435            7 FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK   86 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~   86 (407)
                      ..|+....+++.....+. .  .+.++|||++|.|   +. |.|..+.+++.+.+. +....++|++..|.++||+++++
T Consensus         4 ~~r~~~~~~~~~~~~~~~-~--~~~dvI~l~~G~p---~~-~~p~~v~~a~~~al~-~~~~~~~Y~~~~G~~~LReaia~   75 (418)
T d1w7la_           4 ARRLDGIDYNPWVEFVKL-A--SEHDVVNLGQGFP---DF-PPPDFAVEAFQHAVS-GDFMLNQYTKTFGYPPLTKILAS   75 (418)
T ss_dssp             CGGGTTCCCCTHHHHHHH-H--HTSCCEECCCCSC---SS-CCCHHHHHHHHHHTS-SCGGGGSCCCTTCCHHHHHHHHH
T ss_pred             CccccCCCCCHHHHHHHH-h--CCCCCEECCCCCC---CC-CCCHHHHHHHHHHHh-CCCcccCCCCCcCCHHHHHHHHH
Confidence            356666666665555443 2  3468999999986   44 656666666666665 33345679999999999999999


Q ss_pred             HHhCCCCCCCCC-CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecC-------
Q 015435           87 LILGADSPAIKD-NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDP-------  158 (407)
Q Consensus        87 ~~~~~~~~~~~~-~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~-------  158 (407)
                      ++....+..+++ ++|++  |+|+++++.+++  ...+.+||.|++++|+|+.|...+...|.+++.++....       
T Consensus        76 ~~~~~~g~~~~~~~~I~i--t~G~~~al~~~~--~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~  151 (418)
T d1w7la_          76 FFGELLGQEIDPLRNVLV--TVGGYGALFTAF--QALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGEL  151 (418)
T ss_dssp             HHHHHHTCCCCHHHHEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCS
T ss_pred             HHHHHhCCCCCcccceee--ccCcHHHHHHHH--HhhccCCceeeccccccchhHHHHHHcCCEeecccccccccccccc
Confidence            995444555553 68999  999999999994  445889999999999999999999999999999987421       


Q ss_pred             ---CCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH
Q 015435          159 ---ATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV  235 (407)
Q Consensus       159 ---~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~  235 (407)
                         .++.+|.+++.....  +.++++++ ++||||||.+++.+++++|+++|++|++++|+||+|.++.+++..  ..++
T Consensus       152 ~~~~~~~~d~~~~~~~~~--~~~~~i~~-~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~--~~~~  226 (418)
T d1w7la_         152 GSSSNWQLDPMELAGKFT--SRTKALVL-NTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQ--HISI  226 (418)
T ss_dssp             EEGGGEECCHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCG
T ss_pred             ccccCcccchhhhhcccc--ccccceec-cCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCC--CCCH
Confidence               223455666665443  44555555 999999999999999999999999999999999999999987532  2333


Q ss_pred             HHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhh-HHhH
Q 015435          236 RMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTM-YKEW  314 (407)
Q Consensus       236 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~  314 (407)
                      ..+....++++++.|+||.+++||+|+||+  +++     +.+...+.........+++.+.|.++..++.+... .+.+
T Consensus       227 ~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~--v~~-----~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  299 (418)
T d1w7la_         227 ASLPGMWERTLTIGSAGKTFSATGWKVGWV--LGP-----DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP  299 (418)
T ss_dssp             GGSTTTGGGEEEEEEHHHHTTCGGGCCEEE--ECC-----HHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTST
T ss_pred             HHccccccccceecccCccccCCCCccccc--ccc-----hhhhhhhccccccccccccchhhHHHHHHhhhcccccccc
Confidence            334444578999999999999999999999  576     45566666666666678899999988888765432 1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC------------------CHHHHHHhHhhccEEE
Q 015435          315 TLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL------------------NSEQVAFMTKEYHIYM  376 (407)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~gi~~  376 (407)
                      .+++...++.++++++.+.+.|++.|    +.+..|+||+|.|+++                  +.+++.++|+++||.+
T Consensus       300 ~~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v  375 (418)
T d1w7la_         300 SSYFVQFPQAMQRCRDHMIRSLQSVG----LKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVA  375 (418)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHTTT----CEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEEC
T ss_pred             ccccccchhhhhhhhhhhhhhhhhcC----CcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEE
Confidence            35678889999999999999999988    7888999999999854                  2356788999999999


Q ss_pred             cCC-------------C--eEEecCCCCCChhHHHHHHHHHH
Q 015435          377 TSD-------------G--RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       377 ~~g-------------g--Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                      .||             +  |||++. +++++++++++|+++.
T Consensus       376 ~PG~~F~~~~~~~~~~~~iRis~~~-~~~~l~~a~~rl~~~~  416 (418)
T d1w7la_         376 IPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKWK  416 (418)
T ss_dssp             EEGGGGSCHHHHTTSCSEEEEECCC-CHHHHHHHHHHHHHHH
T ss_pred             EcchhhcCCCccCCCCCEEEEEEcC-CHHHHHHHHHHHHHHh
Confidence            886             1  999985 7888999999998864

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.9e-46  Score=352.07  Aligned_cols=363  Identities=15%  Similarity=0.145  Sum_probs=284.1

Q ss_pred             ccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL   83 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~   83 (407)
                      |..|+.+..+++|+++.....  ...+.++|||++|.|   +. |.|....+++.+. .   ....+|++..|.++||++
T Consensus         1 ~~~r~~~~~~~~i~~l~~~a~~~~~~g~~vi~l~~G~p---~~-~~p~~~~~al~~~-~---~~~~~Y~~~~G~~~LR~a   72 (389)
T d2gb3a1           1 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQP---DL-KTPEVFFERIYEN-K---PEVVYYSHSAGIWELREA   72 (389)
T ss_dssp             CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCC---CS-CCCTHHHHHHHHT-C---CSSCCCCCTTCCHHHHHH
T ss_pred             CChhhhcCCCCHHHHHHHHHHHHHHcCCCEEECCCCCC---CC-CCCHHHHHHHHhc-C---CCCCCCCCCcCCHHHHHH
Confidence            356778888888998876444  345789999999986   44 6676666655432 2   346789999999999999


Q ss_pred             HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435           84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL  163 (407)
Q Consensus        84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  163 (407)
                      +++++...++..+++++|++  |+|+++++..++  ...+.+||.|++++|+|+.+...++..|..++.++.. +.++..
T Consensus        73 ia~~~~~~~g~~~~~~~I~i--t~G~~~~l~~~~--~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~-~~~~~~  147 (389)
T d2gb3a1          73 FASYYKRRQRVDVKPENVLV--TNGGSEAILFSF--AVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRR-MEEGFA  147 (389)
T ss_dssp             HHHHHHHTSCCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECC-GGGTSC
T ss_pred             HHHHHHHhcCCCcccceEEe--cccccccccccc--cccccCCCeEEEeCCCCccccccccccCccccccccc-cccccc
Confidence            99999777777888999999  999999999984  4457899999999999999999999999999999984 334445


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      +.+.+...+.  ++++++++ ++||||||++++.+++++|+++|++|+++||+||+|..+.+++....   .  .....+
T Consensus       148 ~~~~~~~~~~--~~~~~~~l-~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~---~--~~~~~~  219 (389)
T d2gb3a1         148 IPQNLESFIN--ERTKGIVL-SNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFAS---A--LSIESD  219 (389)
T ss_dssp             CCTTGGGGCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC---G--GGSCCT
T ss_pred             hhhhhhhhcc--cCccEEEe-CCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccc---c--cccccc
Confidence            5555555444  45566666 99999999999999999999999999999999999999998753211   1  233457


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      +++++.|+||.++++|+|+||+  +++++.+...    .... .....+++...+.++..++...+      .+++.+++
T Consensus       220 ~~~v~~s~sK~~~~~GlRiG~~--~~~~~~i~~~----~~~~-~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~  286 (389)
T d2gb3a1         220 KVVVIDSVSKKFSACGARVGCL--ITRNEELISH----AMKL-AQGRLAPPLLEQIGSVGLLNLDD------SFFDFVRE  286 (389)
T ss_dssp             TEEEEEESTTTTTCGGGCCEEE--ECSCHHHHHH----HHHH-HHHSCCCCHHHHHHHHHHHTCCH------HHHHHHHH
T ss_pred             cccccccccccccCcccceeee--eccchhHHHH----Hhhh-hhccccccccccccccccccccc------hhcccccc
Confidence            8999999999999999999999  6775543332    2222 22344667777888777776543      66788899


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC---C-HHHHHHhHhh-----ccEEEcCC---------C----e
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL---N-SEQVAFMTKE-----YHIYMTSD---------G----R  381 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~l~~-----~gi~~~~g---------g----R  381 (407)
                      +++++++++.+.|++.+.   ..+..|.+|+|.|+.+   + .+++..++++     +||.+.||         |    |
T Consensus       287 ~~~~~~~~~~~~L~~~~~---~~~~~p~~g~~~~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iR  363 (389)
T d2gb3a1         287 TYRERVETVLKKLEEHGL---KRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIR  363 (389)
T ss_dssp             HHHHHHHHHHHHHHHTTC---CCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEE
T ss_pred             cccccchhhhhhhhhhcc---ccccCCCceEEEEEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEE
Confidence            999999999999999884   4567889999999865   3 3456677665     46777664         1    9


Q ss_pred             EEecCCCCCChhHHHHHHHHHHHhh
Q 015435          382 ISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       382 is~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      |+++. +++++++++++|++++++.
T Consensus       364 is~~~-~~~~l~~a~~~L~~~lk~f  387 (389)
T d2gb3a1         364 IACVL-EKDLLSRAIDVLMEGLKMF  387 (389)
T ss_dssp             EECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcC-CHHHHHHHHHHHHHHHHHh
Confidence            99984 8899999999999999863

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.2e-46  Score=351.40  Aligned_cols=348  Identities=15%  Similarity=0.163  Sum_probs=280.2

Q ss_pred             chhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCC
Q 015435           17 PILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAI   96 (407)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~   96 (407)
                      .++..+.++.+.  .+.|||++|.|   +. |.|+.+.+++.+.+.   ...++|++..|.++||+++|+++...++..+
T Consensus        14 ~~~~~~~~~a~~--~~~i~l~~G~P---d~-~~p~~i~~a~~~~~~---~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~   84 (382)
T d1u08a_          14 TIFTQMSALAQQ--HQAINLSQGFP---DF-DGPRYLQERLAHHVA---QGANQYAPMTGVQALREAIAQKTERLYGYQP   84 (382)
T ss_dssp             CHHHHHHHHHHH--TTCEECCCSSC---SS-CCCHHHHHHHHHHHH---TTCCSCCCTTCCHHHHHHHHHHHHHHHSCCC
T ss_pred             cHHHHHHHHhcc--CCCEEccCCCC---CC-CCCHHHHHHHHHHHh---cCCCCCCCCcCCHHHHHHHHHHHHHHhCCCC
Confidence            456666655543  58899999997   54 656566566666664   3467899999999999999999965555556


Q ss_pred             CCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435           97 KDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA  175 (407)
Q Consensus        97 ~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~  175 (407)
                      +++ +|++  |+|+++++.+++  ...+.+||.|++++|+|+.+...+...|..++.++.. +.++..|++++++.+.  
T Consensus        85 ~~~~~I~v--t~G~~~al~~~~--~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~--  157 (382)
T d1u08a_          85 DADSDITV--TAGATEALYAAI--TALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQ-PPHFRVDWQEFAALLS--  157 (382)
T ss_dssp             CTTTTEEE--ESSHHHHHHHHH--HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECC-TTTCCCCHHHHHHHCC--
T ss_pred             CCCceEEe--ccchHHHHHHHH--hhcccccceEEEecccccchhhhhhhccccceecccc-cccccCCHHHHhhhhc--
Confidence            555 6999  999999999994  5558899999999999999999999999998888884 6667889999998776  


Q ss_pred             CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435          176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM  255 (407)
Q Consensus       176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  255 (407)
                      ++++++++ ++||||||++++.+++++|+++|.+++++++.|++|..+.+.+......  .......++++++.|+||.+
T Consensus       158 ~~~~~i~l-~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~s~SK~~  234 (382)
T d1u08a_         158 ERTRLVIL-NTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASV--LAHPQLRERAVAVSSFGKTY  234 (382)
T ss_dssp             TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCG--GGSHHHHTTEEEEEEHHHHT
T ss_pred             cCccEEEE-CCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccc--cccccccCcEEEEeeccccc
Confidence            55666666 8999999999999999999999999999999999998888765322211  11233457899999999999


Q ss_pred             cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015435          256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDA  335 (407)
Q Consensus       256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (407)
                      +++|+|+||+  +++     +.+...+.........+++.+.|.++..++.+.+      ++...+++.++++++.+.+.
T Consensus       235 ~~pG~RiG~~--v~~-----~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~  301 (382)
T d1u08a_         235 HMTGWKVGYC--VAP-----APISAEIRKVHQYLTFSVNTPAQLALADMLRAEP------EHYLALPDFYRQKRDILVNA  301 (382)
T ss_dssp             TCGGGCCEEE--ECC-----HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCT------HHHHTHHHHHHHHHHHHHHH
T ss_pred             cCCcccchhh--hcc-----chhHHHHHhhhcccccccccccccccccccccch------HHHHHHHHHHHhhhhhhhhh
Confidence            9999999999  566     4455555555555566899999999999887553      56778889999999999999


Q ss_pred             HHhcCCCCCcccccCCceeEEecCC------CH-HHHHHhHhhccEEEcCCC------------eEEecCCCCCChhHHH
Q 015435          336 LSARGTPGDWSHIIKQIGMFTFTGL------NS-EQVAFMTKEYHIYMTSDG------------RISMAGLSSKTVPHLT  396 (407)
Q Consensus       336 l~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~l~~~gi~~~~gg------------Ris~~~~~~e~i~~~~  396 (407)
                      ++..+    +.+..|+||+|.|+++      +. +++.++++++||.+.||.            |||++. ++|++++++
T Consensus       302 ~~~~g----~~~~~p~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~-~~e~l~~al  376 (382)
T d1u08a_         302 LNESR----LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAA  376 (382)
T ss_dssp             TTSSS----CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHH
T ss_pred             hccCC----cEEecCCceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeC-CHHHHHHHH
Confidence            88777    7888999999999744      33 567788899999999861            999985 888899999


Q ss_pred             HHHHH
Q 015435          397 DAIHA  401 (407)
Q Consensus       397 ~~l~~  401 (407)
                      +||++
T Consensus       377 ~RL~~  381 (382)
T d1u08a_         377 ERLRQ  381 (382)
T ss_dssp             HHHTT
T ss_pred             HHHhC
Confidence            99875

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=100.00  E-value=1.6e-45  Score=348.77  Aligned_cols=350  Identities=11%  Similarity=0.109  Sum_probs=266.8

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...+.++|+|++|.|   +. |.|+.+++++.+.+.  . ..++|+  .|.++||+++++++...++..+++++|++  |
T Consensus        27 ~~~g~~vi~l~~g~p---df-~~p~~v~~al~~~~~--~-~~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~v--t   95 (394)
T d1c7na_          27 PEVGNEVVPLSVADM---EF-KNPPELIEGLKKYLD--E-TVLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIIN--T   95 (394)
T ss_dssp             TTCCTTCCCCCSSSC---SS-CCCHHHHHHHHHHHH--H-CCCSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEE--E
T ss_pred             HhcCCCeEEccCCCC---CC-CCCHHHHHHHHHHHh--C-CCcCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEe--e
Confidence            455689999999986   55 888888888888775  2 345674  47899999999999766667778899999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec-CCCCCcChhhHHHHHHcCCCCcEEEEec
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD-PATRGLNFQGLLEDLRAAPSGAIVLLHA  185 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~~~~~v~i~~  185 (407)
                      +|+++++.+++  ...+.+||+|++++|.|.++...+...|.+.+.++... +..+.+|.+.++..+.. ++++++++ +
T Consensus        96 ~G~~~al~~~~--~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~i~l-~  171 (394)
T d1c7na_          96 AGVVPAVFNAV--REFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD-KNNKALLF-C  171 (394)
T ss_dssp             SSHHHHHHHHH--HHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC-TTEEEEEE-E
T ss_pred             ccchhhhhhhh--ccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhcc-ccceEEEe-c
Confidence            99999999984  55588999999999999999999999999998887642 23345788888877652 34556555 9


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCccee
Q 015435          186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGAL  265 (407)
Q Consensus       186 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  265 (407)
                      +||||||.+++.+++++|+++|++|+++||+||+|.++.+++....... .......++++++.|+||.|+++|+|+||+
T Consensus       172 ~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~-~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~  250 (394)
T d1c7na_         172 SPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQ-SIDEQLADKTITFTAPSKTFNIAGMGMSNI  250 (394)
T ss_dssp             SSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGG-GSCHHHHTTEEEEECSHHHHTCGGGCCEEE
T ss_pred             ccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchh-hhhcccccceeecccccccccccccccccc
Confidence            9999999999999999999999999999999999999998754222111 111233478999999999999999999999


Q ss_pred             EEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHH-HHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435          266 SIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVA-TILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD  344 (407)
Q Consensus       266 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  344 (407)
                        +++++.+.+.+..    .......++....+.++. ......      .++.++.++.++++++.+.+.++..+.  .
T Consensus       251 --~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~--~  316 (394)
T d1c7na_         251 --IIKNPDIRERFTK----SRDATSGMPFTTLGYKACEICYKEC------GKWLDGCIKVIDKNQRIVKDFFEVNHP--E  316 (394)
T ss_dssp             --ECCCHHHHHHHHH----HHHHTTCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHHHHCT--T
T ss_pred             --cccChhhhhhhhh----hhhhccccccccccchhhhhhhcch------hhhhcccccccchhhhhhhhhhhcccc--c
Confidence              6777665444333    333233333333333333 222222      255677788888889998888876532  1


Q ss_pred             cccccCCceeEEecCC-----CHH-HHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHhhC
Q 015435          345 WSHIIKQIGMFTFTGL-----NSE-QVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       345 ~~~~~~~~~~~~~~~~-----~~~-~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      +.+..|+|++|+|+++     +.+ +..++++++||.+.||.          |||++. ++|++++++++|++++++++
T Consensus       317 ~~~~~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~-~~e~i~eal~rl~~~l~~Lk  394 (394)
T d1c7na_         317 IKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKDLK  394 (394)
T ss_dssp             SBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred             eeecCCCceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHHHhcC
Confidence            6777889999999744     444 56778888899999861          999985 78889999999999999874

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=100.00  E-value=2.2e-45  Score=349.16  Aligned_cols=374  Identities=12%  Similarity=0.132  Sum_probs=282.1

Q ss_pred             ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhc-cccccccCCCCCCcHHHHHHH
Q 015435            6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN-DQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      +..+.....+++|+++.+..   +++++|||++|.|   +....|.+.+.++...+.+ ......+|++..|.+++|+++
T Consensus         7 ~~~~~~~~~~s~ire~~~~~---~~~~~i~l~~G~P---~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~ai   80 (403)
T d1wsta1           7 FSEKAMLMKASEVRELLKLV---ETSDVISLAGGLP---APETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLAL   80 (403)
T ss_dssp             CCHHHHHCCCHHHHHHHHHH---TSSSCEECCCCCC---CGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHh---CCCCcEECCCCCC---CccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHH
Confidence            45666666666676554422   4578999999986   3323466667666555431 223456799999999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN  164 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  164 (407)
                      ++++...++..+++++|++  |+|+++++..+.  ...+++||.|++++|+|..+...+..+|.+++.++.++...+...
T Consensus        81 a~~l~~~~g~~~~~~~I~i--t~G~~~al~~~~--~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~  156 (403)
T d1wsta1          81 ARWMEKRYDIPMSKVEIMT--VAGSQQALDLIG--RVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDL  156 (403)
T ss_dssp             HHHHHHHHCCCCTTCEEEE--ESSHHHHHHHHH--HHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHH
T ss_pred             HHHHHHHhCCCCChHHeee--cccchHHHHHHH--HHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCCcccc
Confidence            9999665666778899999  999999999995  444789999999999999999999999999999999533222222


Q ss_pred             hhhHH-HHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          165 FQGLL-EDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       165 ~~~l~-~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      ..... +..........+++.++||||||.+++.+++++|+++|++||++||+||+|.++.+++...  .++. .....+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~--~~~~-~~~~~~  233 (403)
T d1wsta1         157 LEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPT--PPIK-HFDDYG  233 (403)
T ss_dssp             HHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC--CCGG-GGCSSS
T ss_pred             ccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCC--Cccc-ccCCCC
Confidence            22222 2233333455666669999999999999999999999999999999999999999875322  2221 123457


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      ++++++|+||.++ +|+|+||+  +++     +.+.+.+.........+++...+.+...++....    +..++++.++
T Consensus       234 ~~i~~~S~SK~~~-~G~RiG~~--i~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  301 (403)
T d1wsta1         234 RVIYLGTFSKILA-PGFRIGWV--AAH-----PHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGY----LDEHIPKIIE  301 (403)
T ss_dssp             CEEEEEESTTTTC-GGGCCEEE--EEC-----HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH----HHHHHHHHHH
T ss_pred             cEEEEccccceec-Cccccccc--ccc-----hHHHHHHHHHHhhhccccccchhhhHHhhhhccc----cchhHHHHHH
Confidence            8999999999996 99999999  566     4455555555555556788888887777766553    3356788888


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCCC------------eEEecCC
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSDG------------RISMAGL  387 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~gg------------Ris~~~~  387 (407)
                      .++++++.+.+.|++.... .+.+..|.+|+|+|+.+    +.+.+.++|.++||.+.||.            ||+++.+
T Consensus       302 ~~~~~~~~~~~~L~~~~~~-~~~~~~p~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~  380 (403)
T d1wsta1         302 FYKPRRDAMLEALEEYMPE-GVEWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYV  380 (403)
T ss_dssp             HHHHHHHHHHHHHHHHCCT-TCEECCCSBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSS
T ss_pred             HHHHHHHHHHHHHHhhccC-CeEEeCCCceeEEEEECCCCCCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecCC
Confidence            8999999999999875211 26778899999999844    45566666777899998861            9999866


Q ss_pred             CCCChhHHHHHHHHHHHh
Q 015435          388 SSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       388 ~~e~i~~~~~~l~~~l~~  405 (407)
                      +++++++++++|++++++
T Consensus       381 ~~~~l~~al~rl~~~l~~  398 (403)
T d1wsta1         381 PEETIREGVRRLAETIKE  398 (403)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            788899999999999875

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.1e-45  Score=345.12  Aligned_cols=354  Identities=19%  Similarity=0.163  Sum_probs=280.8

Q ss_pred             cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435            5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS   84 (407)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~   84 (407)
                      ++.+|+...+.+. +..+.++.+.  ...|||++|.|   +. |.|+.+++++.+.+.    ..++|+++.|.++||+++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~la~~--~~~I~ls~g~p---~~-~~p~~i~~al~~~l~----~~~~Y~~~~G~~elr~ai   70 (368)
T d1v2da_           2 RLHPRTEAAKESI-FPRMSGLAQR--LGAVNLGQGFP---SN-PPPPFLLEAVRRALG----RQDQYAPPAGLPALREAL   70 (368)
T ss_dssp             CCCGGGGGC---C-HHHHHHHHHH--HTCEECCCCSC---SS-CCCHHHHHHHHHHTT----TSCSCCCTTCCHHHHHHH
T ss_pred             CCChhhhhcCCCH-HHHHHHHhcc--CCCEEecCCCC---CC-CCCHHHHHHHHHHhh----cccCCCCCcCCHHHHHHH
Confidence            5678888888754 4444444433  36899999986   44 666667666666553    356899999999999999


Q ss_pred             HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec-CCCCCc
Q 015435           85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD-PATRGL  163 (407)
Q Consensus        85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~  163 (407)
                      ++++ +     +++++|++  |+|+++++..++  ...+.+||.|++++|+|..+...+...|.+++.++++. .+++.+
T Consensus        71 A~~~-~-----~~~~~Iii--t~G~~~al~~~~--~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  140 (368)
T d1v2da_          71 AEEF-A-----VEPESVVV--TSGATEALYVLL--QSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRL  140 (368)
T ss_dssp             HHHH-T-----SCGGGEEE--ESSHHHHHHHHH--HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEEC
T ss_pred             Hhhc-c-----cCCcceee--ccchHHHHHHHh--hccccccccccccCCcchhhhhHHHhcCCccceeccccccccccC
Confidence            9998 4     34689999  999999999994  44578999999999999999999999999999988742 345789


Q ss_pred             ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435          164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG  243 (407)
Q Consensus       164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~  243 (407)
                      |++.+++.+.  +.++++++ ++||||||++++.+++++|+++|++||+++|+|++|..+......   ...  .....+
T Consensus       141 d~~~l~~~~~--~~~~~i~~-~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~---~~~--~~~~~~  212 (368)
T d1v2da_         141 DLSALEKALT--PRTRALLL-NTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERP---RRL--REFAPE  212 (368)
T ss_dssp             CHHHHHTTCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC---CCH--HHHCTT
T ss_pred             CHHHHHHhhc--cCceEEEE-cCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccc---ccc--cccccc
Confidence            9999999887  55666665 999999999999999999999999999999999999877765321   111  124457


Q ss_pred             cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435          244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD  323 (407)
Q Consensus       244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (407)
                      +.+++.|+||.++++|+|+||+  +++ ++    +...+.........+++.+.|.++..++....    +.++++++++
T Consensus       213 ~~~~~~~~sk~~~~~G~R~g~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~  281 (368)
T d1v2da_         213 RTFTVGSAGKRLEATGYRVGWI--VGP-KE----FMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR----REGFYEALRE  281 (368)
T ss_dssp             TEEEEEEHHHHTTCGGGCCEEE--ECC-TT----THHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH----HTTHHHHHHH
T ss_pred             ccceeecccccccccccccccc--ccc-cc----ccchhhhhhhcccccccccccccccccccccc----chhhHHHHHH
Confidence            8899999999999999999999  455 44    34444444555566888888888887776442    2356788889


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCC----------C--eEEecCCCCCC
Q 015435          324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD----------G--RISMAGLSSKT  391 (407)
Q Consensus       324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g----------g--Ris~~~~~~e~  391 (407)
                      .++++++++.+.|++.|    +.+..|.+++|+|++++.....++++++||.+.||          +  |||++. ++|+
T Consensus       282 ~~~~~~~~l~~~l~~~g----~~~~~p~g~~~~~~~l~~~~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~-~~e~  356 (368)
T d1v2da_         282 GYRRRRDLLAGGLRAMG----LRVYVPEGTYFLMAELPGWDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEE  356 (368)
T ss_dssp             HHHHHHHHHHHHHHHTT----CCEECCSBSSEEEEECTTCCHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHH
T ss_pred             HHHHhhhhhhhhHHhcC----cEEecCCceeEEEEeCCccHHHHHHHhCCEEEEechhhCCCCCCCCEEEEEecC-CHHH
Confidence            99999999999999998    78889999999999886655667888999999875          1  999986 8899


Q ss_pred             hhHHHHHHHHHH
Q 015435          392 VPHLTDAIHAAV  403 (407)
Q Consensus       392 i~~~~~~l~~~l  403 (407)
                      +++++++|++++
T Consensus       357 i~~ai~rL~~~l  368 (368)
T d1v2da_         357 LHLALERLGRVV  368 (368)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999999874

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=100.00  E-value=3.5e-44  Score=342.98  Aligned_cols=348  Identities=15%  Similarity=0.199  Sum_probs=265.3

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhc---------cccccccCCCCCCcHHHHHHHHHHHhCCCCC--CCCCC
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN---------DQSRVKEYLPIVGLVDFNKLSAKLILGADSP--AIKDN   99 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~--~~~~~   99 (407)
                      ..+|+|+++..      ......+...+..-..         ......+|++..|.++||+++|+++...++.  .++++
T Consensus        36 ~G~i~l~~aen------~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e  109 (428)
T d1iaya_          36 NGVIQMGLAEN------QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE  109 (428)
T ss_dssp             TSBEECSSCCC------CSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT
T ss_pred             CceEEeecccC------ccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChh
Confidence            56999998862      3344444443322110         0112457999999999999999999654443  35678


Q ss_pred             ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCceeeEEEeecCCCCCcChhhHHHHHHc----
Q 015435          100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLSVKTYRYYDPATRGLNFQGLLEDLRA----  174 (407)
Q Consensus       100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~----  174 (407)
                      +|++  |+|+++++.+++  ...+.+||.|++++|+|..+...+. ..|++++++++....++.+|+++++..+..    
T Consensus       110 ~Ivi--t~G~~~al~~~~--~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~  185 (428)
T d1iaya_         110 RVVM--AGGATGANETII--FCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKS  185 (428)
T ss_dssp             SCEE--EEHHHHHHHHHH--HHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHT
T ss_pred             hEEE--cCCHHHHHHHHH--HHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhcc
Confidence            9999  999999999994  4558899999999999999988877 458999999986566688999988766432    


Q ss_pred             CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH-------cCCcEEE
Q 015435          175 APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA-------DGGECLV  247 (407)
Q Consensus       175 ~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~-------~~~~~i~  247 (407)
                      .++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.+  ..++..+..       ..+++++
T Consensus       186 ~~~~~~~~l-~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~vi~  262 (428)
T d1iaya_         186 NIKVKGLIL-TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ--FVSIAEILDEQEMTYCNKDLVHI  262 (428)
T ss_dssp             TCCEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSC--CCCHHHHHTSGGGTTSCTTSEEE
T ss_pred             CCCceEEEE-ccCCCcccccccccccchhheeeccCcEEEEecccccccccCccc--ccccccccchhhccccccceEEE
Confidence            234455555 999999999999999999999999999999999999999987542  223333322       3468999


Q ss_pred             EEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 015435          248 AQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIIS  327 (407)
Q Consensus       248 ~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  327 (407)
                      ++||||.|+++|+|+||+  ++.++.+.+    .+.....  ....+...+.++.+.+.+...   ..+++++.++++++
T Consensus       263 ~~s~SK~~~~~GlRiG~~--~~~~~~l~~----~~~~~~~--~~~~~~~~~~~~~a~l~~~~~---~~~~~~~~~~~l~~  331 (428)
T d1iaya_         263 VYSLSKDMGLPGFRVGII--YSFNDDVVN----CARKMSS--FGLVSTQTQYFLAAMLSDEKF---VDNFLRESAMRLGK  331 (428)
T ss_dssp             EEESTTTSSCGGGCEEEE--EESCHHHHH----HHHHHHT--TSCCCHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHH
T ss_pred             EecCCCcccCCCcccccc--cccccchhh----hhhhhhc--ccccccccccchhhhhhhhcc---ccccccccccccch
Confidence            999999999999999999  576655433    3333332  235666677777777776542   23457788889999


Q ss_pred             HHHHHHHHHHhcCCCCCcccccCCceeEEecCCC-----------HHHHHHhHhhccEEEcCC--------C--eEEecC
Q 015435          328 MRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN-----------SEQVAFMTKEYHIYMTSD--------G--RISMAG  386 (407)
Q Consensus       328 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~gi~~~~g--------g--Ris~~~  386 (407)
                      +++.+.+.|+..|    +++..|++|+|+|+++.           .+++..+++++||.+.||        |  ||+++.
T Consensus       332 r~~~~~~~L~~~g----i~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~  407 (428)
T d1iaya_         332 RHKHFTNGLEVVG----IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFAN  407 (428)
T ss_dssp             HHHHHHHHHHHTT----CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSS
T ss_pred             hHHHHHHHHHhCC----CEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCC
Confidence            9999999999888    78889999999998662           234678888899999986        1  999986


Q ss_pred             CCCCChhHHHHHHHHHHHhh
Q 015435          387 LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~~~  406 (407)
                      .++++++.+++||++++...
T Consensus       408 ~~~~~l~~al~Rl~~~l~~~  427 (428)
T d1iaya_         408 MDDGTVDIALARIRRFVGVE  427 (428)
T ss_dssp             SCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHhhc
Confidence            55667999999999998753

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.6e-45  Score=350.52  Aligned_cols=368  Identities=12%  Similarity=0.135  Sum_probs=279.4

Q ss_pred             cCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhc-cccccccCCCCCCcHHHHHHHHHHHh
Q 015435           11 VRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN-DQSRVKEYLPIVGLVDFNKLSAKLIL   89 (407)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~g~~~l~~~~a~~~~   89 (407)
                      ....+++|.++.+.   ..++++|||+.|.|   +....|.+.+.++...+.+ ......+|+++.|+++||+++++++.
T Consensus        21 ~~~~~s~ir~~~~~---~~~~~~I~l~~G~P---d~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~   94 (420)
T d1vp4a_          21 QNMKSSIIREILKF---AADKDAISFGGGVP---DPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLE   94 (420)
T ss_dssp             HTCCCCCHHHHTTT---TTSTTCEECCCCSC---CGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHH---hCCCCcEecCCcCC---CCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHH
Confidence            34466677766553   25689999999986   4333466666666555431 22345689999999999999999995


Q ss_pred             CCCCCC-CCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhH
Q 015435           90 GADSPA-IKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGL  168 (407)
Q Consensus        90 ~~~~~~-~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l  168 (407)
                      ..++.. +++++|++  |+|+++++.+++  ...+.+||.|++++|+|..+...++..|.+++.+|.+ +  .+++++.+
T Consensus        95 ~~~g~~~~~~~~I~i--t~G~~~al~~~~--~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~l  167 (420)
T d1vp4a_          95 RMYGITGLDEDNLIF--TVGSQQALDLIG--KLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLE-D--DGMDLNVL  167 (420)
T ss_dssp             HHHCCCSCCGGGEEE--EEHHHHHHHHHH--HHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE-T--TEECHHHH
T ss_pred             HHhCCCCCCHHHeEe--ccchhhhHHHHH--HhhhccccccccccccccchhHHHHHHhhhccccccc-c--cccccchh
Confidence            544443 57899999  999999999984  4457899999999999999999999999999999984 3  35788877


Q ss_pred             HHHHHc------CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435          169 LEDLRA------APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG  242 (407)
Q Consensus       169 ~~~i~~------~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~  242 (407)
                      ...+.+      ..+...++++++||||||.+++.+++++|+++|++|++++|+||+|.++.+++....  +.. .....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~--~~~-~~~~~  244 (420)
T d1vp4a_         168 ERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVD--PIF-KIGGP  244 (420)
T ss_dssp             HHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCC--CHH-HHHCT
T ss_pred             hhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccc--ccc-ccccc
Confidence            665432      123455666699999999999999999999999999999999999999998753221  121 23456


Q ss_pred             CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      +.+++++|+||.++ +|+|+||+  +++ +    .+++.+.........+++...|.++..++....    +.+++++.+
T Consensus       245 ~~~i~~~s~sk~~~-~G~RiG~~--~~~-~----~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~----~~~~~~~~~  312 (420)
T d1vp4a_         245 ERVVLLNTFSKVLA-PGLRIGMV--AGS-K----EFIRKIVQAKQSADLCSPAITHRLAARYLERYD----LLEQLKPTI  312 (420)
T ss_dssp             TTEEEEEESTTTTC-GGGCEEEE--ECC-H----HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSC----HHHHTHHHH
T ss_pred             cceeEEeccccccc-cccccccc--ccc-c----hhhhhhhhhhhhccccCchhhhhhhhhhccccc----ccccchhHH
Confidence            78899999999875 99999999  565 4    455555555555566888888888888776543    335566777


Q ss_pred             HHHHHHHHHHHHHHHhcCCC-CCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCCC------------eEEec
Q 015435          323 DRIISMRQQLFDALSARGTP-GDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSDG------------RISMA  385 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~gg------------Ris~~  385 (407)
                      +.++++++.+.+.|.+.... .++.+..|.||+|+|+.+    +...+.++|+++||.+.||.            |||++
T Consensus       313 ~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~  392 (420)
T d1vp4a_         313 ELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC  392 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS
T ss_pred             HHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCCCCCHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeC
Confidence            77888888888877764211 127888999999999855    44445566777999998861            99998


Q ss_pred             CCCCCChhHHHHHHHHHHHhh
Q 015435          386 GLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       386 ~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ..+++++++++++|++++++.
T Consensus       393 ~~~~e~l~~a~~rL~~~l~~~  413 (420)
T d1vp4a_         393 LPPDEKIVEGIKRLREVVLEY  413 (420)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHh
Confidence            657788999999999999764

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-44  Score=337.11  Aligned_cols=344  Identities=14%  Similarity=0.059  Sum_probs=264.8

Q ss_pred             eeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccH
Q 015435           33 KLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGS  112 (407)
Q Consensus        33 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a  112 (407)
                      +|+|++|.+   +. |.|+.+.+++.+.+.   ....+|++..| +++|+++++++...++..+++++|++  |+|++++
T Consensus         1 ~~~~~~~~~---df-~~p~~i~eal~~~~~---~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~i--t~G~~~~   70 (361)
T d1d2fa_           1 LLPFTISDM---DF-ATAPCIIEALNQRLM---HGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVY--GPSVIYM   70 (361)
T ss_dssp             CEECCSSSC---SS-CCCHHHHHHHHHHHT---TCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEE--ESCHHHH
T ss_pred             CcCcCCCCC---CC-CCCHHHHHHHHHHHh---CCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEE--eCCHHHH
Confidence            589999987   65 878787777777775   23457988888 67999999999776777788899999  9999999


Q ss_pred             HHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecC-CCCCcChhhHHHHHHcCCCCcEEEEecCCCCCC
Q 015435          113 LRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDP-ATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPT  191 (407)
Q Consensus       113 ~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPt  191 (407)
                      +..+.  ...+++||+|++++|+|.++...++..|.+++.++.... +++.+|++.+++.+.+ ++++++++ ++|||||
T Consensus        71 l~~~~--~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~-~~~~~i~l-~~p~NPT  146 (361)
T d1d2fa_          71 VSELI--RQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK-PECKIMLL-CSPQNPT  146 (361)
T ss_dssp             HHHHH--HHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS-TTEEEEEE-ESSCTTT
T ss_pred             HHHHh--hhccccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhccc-CCceeEEe-ccccccc
Confidence            99984  445789999999999999999999999999999987532 3456899999998862 34555555 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecC
Q 015435          192 GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKT  271 (407)
Q Consensus       192 G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~  271 (407)
                      |.+++.+++++|+++|+++|++||+||+|.++.+++....  ++  .....++++++.|+||.++++|+|+||+  ++.+
T Consensus       147 G~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~--~~--~~~~~~~~v~~~s~SK~~~~~g~R~g~~--~~~~  220 (361)
T d1d2fa_         147 GKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHI--PW--SNVARGDWALLTSGSKSFNIPALTGAYG--IIEN  220 (361)
T ss_dssp             CCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC--CG--GGTCCSSEEEEECSHHHHTCGGGCCEEE--EECS
T ss_pred             ccccchhhhhhhhhhhhhhheeeeeccccccccccccccc--cc--ccccccccccccccccccccccccceee--ecch
Confidence            9999999999999999999999999999999988653222  11  1223568999999999999999999998  5665


Q ss_pred             hhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC
Q 015435          272 EDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ  351 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  351 (407)
                      +.........+....  ...+++...+.++...+....      .+.++.++.++++++.+.+.+.+...  .+.+..|+
T Consensus       221 ~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~r~~~~~~~~~~~~~--~~~~~~p~  290 (361)
T d1d2fa_         221 SSSRDAYLSALKGRD--GLSSPSVLALTAHIAAYQQGA------PWLDALRIYLKDNLTYIADKMNAAFP--ELNWQIPQ  290 (361)
T ss_dssp             HHHHHHHHHHHHTTS--CCCSCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCS--SCCCCCCS
T ss_pred             hHHHHHHhhhccccc--ccccchhhhHHHHHHHhhccc------hhhhcccccchhhHHHHHHHhhhhcc--cccccccC
Confidence            554444333332221  222444455554444443322      45667778888888888887776532  16677899


Q ss_pred             ceeEEecCC-----CHH-HHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHhhC
Q 015435          352 IGMFTFTGL-----NSE-QVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       352 ~~~~~~~~~-----~~~-~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      +|+|.|+++     +.+ +..++++++||.+.||.          |||++. +++++++++++|+++++++.
T Consensus       291 gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~-~~e~l~~al~rl~~~l~~lr  361 (361)
T d1d2fa_         291 STYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRAVR  361 (361)
T ss_dssp             BCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred             ceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcC-CHHHHHHHHHHHHHHHHhcC
Confidence            999999744     444 46678898999998861          999974 78999999999999999863

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=100.00  E-value=7.3e-44  Score=341.07  Aligned_cols=348  Identities=17%  Similarity=0.200  Sum_probs=265.2

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhc----------cccccccCCCCCCcHHHHHHHHHHHhCCCC--CCCCC
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN----------DQSRVKEYLPIVGLVDFNKLSAKLILGADS--PAIKD   98 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~--~~~~~   98 (407)
                      ..+|+|++++.      +...+.++..+..-..          .......|++..|.++||+++|+++...++  ..+++
T Consensus        36 ~G~i~l~~~en------~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~p  109 (431)
T d1m7ya_          36 NGIIQMGLAEN------QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP  109 (431)
T ss_dssp             TSBEECSSCCC------CSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG
T ss_pred             CcEEEeecccc------cccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCc
Confidence            34899998862      4445555554432100          001234699999999999999999954443  34668


Q ss_pred             CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCceeeEEEeecCCCCCcChhhHHHHHHcC--
Q 015435           99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--  175 (407)
Q Consensus        99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--  175 (407)
                      ++|++  |+|+++++.+++  ...+.+||+|++++|+|..+...+. ..|+++++++++.+.++.+|++.+++.+.+.  
T Consensus       110 e~I~i--t~G~~~al~~~~--~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~  185 (431)
T d1m7ya_         110 NHLVL--TAGATSANETFI--FCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEK  185 (431)
T ss_dssp             GGEEE--EEHHHHHHHHHH--HHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHH
T ss_pred             ceEEE--CCCHHHHHHHHH--HHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhh
Confidence            99999  999999999995  4457899999999999999998887 5689999999976666789999998877531  


Q ss_pred             --CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH---------cCCc
Q 015435          176 --PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA---------DGGE  244 (407)
Q Consensus       176 --~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~---------~~~~  244 (407)
                        .+++++++ +|||||||.+++.+++++|+++|++||++||+||+|..+.+++.  ...++..+..         ..++
T Consensus       186 ~~~~~~~i~~-~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~  262 (431)
T d1m7ya_         186 RNLRVKGVLV-TNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVMEVLKDRNCDENSEVWQR  262 (431)
T ss_dssp             TTCCEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHHHHTTTTTCSSSSSGGGG
T ss_pred             ccCcceEEEe-cCccccccccccccccccccccccccCcceeecccccccccCCC--CCCCHHHHhhhcccccccccCce
Confidence              23445555 99999999999999999999999999999999999999998753  2333333221         1257


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +++++|+||.|+++|+|+||+  +++++.+.    .......  ....++...+.++...+.+...   +.++.++.+++
T Consensus       263 vi~~~s~SK~~~~~G~RiG~~--~~~~~~i~----~~~~~~~--~~~~~~~~~~~~~~a~l~~~~~---~~~~~~~~~~~  331 (431)
T d1m7ya_         263 VHVVYSLSKDLGLPGFRVGAI--YSNDDMVV----AAATKMS--SFGLVSSQTQHLLSAMLSDKKL---TKNYIAENHKR  331 (431)
T ss_dssp             EEEEEESSSSSCCGGGCEEEE--EESCHHHH----HHHHHHG--GGSCCCHHHHHHHHHHHHCHHH---HHHHHHHHHHH
T ss_pred             EEEEecCcccccCCCCcccee--ccchhhhH----HHHHHHh--ccccccccccchhhhhhccchh---hhhhhhhhhhh
Confidence            999999999999999999999  57643322    2222222  2235666667766666666542   23567788899


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC-----------HHHHHHhHhhccEEEcCCC----------eEE
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN-----------SEQVAFMTKEYHIYMTSDG----------RIS  383 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~gi~~~~gg----------Ris  383 (407)
                      ++++++.+.+.|++.|    +.+..|++|+|+|+++.           .+++.++++++||.+.||.          ||+
T Consensus       332 ~~~~~~~l~~~L~~~g----i~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~  407 (431)
T d1m7ya_         332 LKQRQKKLVSGLQKSG----ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVC  407 (431)
T ss_dssp             HHHHHHHHHHHHHTTT----CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEE
T ss_pred             hhhhhhhhhhhhhcCC----cEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEE
Confidence            9999999999999888    78889999999998652           2456788888999999862          999


Q ss_pred             ecCCCCCChhHHHHHHHHHHHhh
Q 015435          384 MAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       384 ~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++..++++++.++++|++++++.
T Consensus       408 ~a~~~e~~l~~al~rL~~~l~~~  430 (431)
T d1m7ya_         408 FANLPERTLDLAMQRLKAFVGEY  430 (431)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             eCcCCHHHHHHHHHHHHHHHHHh
Confidence            98656678999999999999864

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=7.4e-40  Score=305.59  Aligned_cols=337  Identities=16%  Similarity=0.154  Sum_probs=251.2

Q ss_pred             CCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCC
Q 015435           15 EDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSP   94 (407)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~   94 (407)
                      ++.+.+..+.++-.+ .++||||.|..  +.  +.|+.+.+++.+.+.    ....| |..+..+||+++|+++ +    
T Consensus         7 gg~~~~~~~~~g~~p-~~~idls~~~n--p~--~~p~~~~~a~~~~~~----~~~~Y-p~~~~~~Lr~aia~~~-~----   71 (355)
T d1lc5a_           7 GGNIREPATVLGISP-DQLLDFSANIN--PL--GMPVSVKRALIDNLD----CIERY-PDADYFHLHQALARHH-Q----   71 (355)
T ss_dssp             SCCCHHHHHHHTSCG-GGSEECSSCCC--TT--CCCHHHHHHHHHTGG----GGGSC-CCTTCHHHHHHHHHHH-T----
T ss_pred             CCHHHHHHHHhCCCh-hheEEccCCCC--CC--CCCHHHHHHHHHHHH----HhccC-CCCChHHHHHHHHHHh-C----
Confidence            445666766665322 47999999963  22  445556555555443    34567 6677899999999998 4    


Q ss_pred             CCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435           95 AIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA  174 (407)
Q Consensus        95 ~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~  174 (407)
                       +++++|++  |+|+++++.++.   ..+ .++.+++..|.|..|.......+.+++.+++..++++.++ +++++.+. 
T Consensus        72 -v~~~~I~~--~~g~~~~~~~~~---~~~-~~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~-  142 (355)
T d1lc5a_          72 -VPASWILA--GNGETESIFTVA---SGL-KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALT-  142 (355)
T ss_dssp             -SCGGGEEE--ESSHHHHHHHHH---HHH-CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCC-
T ss_pred             -CCHHHEEe--cccHHHHHHHHH---hhh-ccccccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccc-
Confidence             44689999  999999888773   222 5677778889999999999999999999998645444444 55666555 


Q ss_pred             CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435          175 APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN  254 (407)
Q Consensus       175 ~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
                       ++++++++ ++||||||.+++.+++++|+++|++|++++|+||+|.++.+.+...  .   ......++++++.|+||.
T Consensus       143 -~~~~~v~l-~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~--~---~~~~~~~~~i~~~S~SK~  215 (355)
T d1lc5a_         143 -PDLDCLFL-CTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGF--I---PALKDNPHIWVLRSLTKF  215 (355)
T ss_dssp             -TTCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCS--G---GGCTTCTTEEEEEESTTT
T ss_pred             -cccceeee-ecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccc--c---ccccccccceeecccccc
Confidence             66788777 8999999999999999999999999999999999999988764321  1   123446789999999999


Q ss_pred             ccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          255 MGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       255 ~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                      ++++|+|+||+  +++++...+    .++...  ...+.+.+++.++..++++.       .+..+.+++++++++++.+
T Consensus       216 ~~l~GlR~G~~--i~~~~~~~~----~~~~~~--~~~~~~~~~~~~a~~~l~~~-------~~~~~~~~~~~~~~~~~~~  280 (355)
T d1lc5a_         216 YAIPGLRLGYL--VNSDDAAMA----RMRRQQ--MPWSVNALAALAGEVALQDS-------AWQQATWHWLREEGARFYQ  280 (355)
T ss_dssp             TTCTTTCCEEE--ECCCHHHHH----HHHHHS--CTTCSCHHHHHHHHHGGGCH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccce--eccchhhhH----HHHhhc--CCcccccccccccccccccc-------chhHHHHHHHHHHHHHHHH
Confidence            99999999999  576544333    233332  23477888899999888875       4466778888999999999


Q ss_pred             HHHhcCCCCCcccccCCceeEEecCCC--HHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHH
Q 015435          335 ALSARGTPGDWSHIIKQIGMFTFTGLN--SEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAA  402 (407)
Q Consensus       335 ~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~  402 (407)
                      .|.+++.   +.+. |.+++|.|+++.  ...+.+.|.++||.++|+.          ||+++  +++++++++++|+++
T Consensus       281 ~l~~~~~---~~~~-p~~~~f~~~~~~~~~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~--~~~e~~~li~aL~~i  354 (355)
T d1lc5a_         281 ALCQLPL---LTVY-PGRANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNV  354 (355)
T ss_dssp             HHHTSTT---EEEC-CCSSSEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHH
T ss_pred             HHhhcCC---cEEC-CCCCEEEEEECCCCHHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC--CHHHHHHHHHHHHHh
Confidence            9998863   5544 556778888553  2234444456899998752          99986  678899999999886


Q ss_pred             H
Q 015435          403 V  403 (407)
Q Consensus       403 l  403 (407)
                      +
T Consensus       355 l  355 (355)
T d1lc5a_         355 L  355 (355)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.1e-39  Score=296.50  Aligned_cols=313  Identities=15%  Similarity=0.128  Sum_probs=239.0

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      +.+++++|+|++|..    .+|.|+.+++++.+++.  . ...+|.|..|.++||+++++++.. .+  +++++|++  |
T Consensus        15 ~~~~~d~~~l~~~en----p~~~p~~i~~~~~~~~~--~-~~~~~yp~~g~~~Lr~aia~~~~~-~~--v~~d~I~i--t   82 (334)
T d2f8ja1          15 ETEKRDKTYLALNEN----PFPFPEDLVDEVFRRLN--S-DALRIYYDSPDEELIEKILSYLDT-DF--LSKNNVSV--G   82 (334)
T ss_dssp             CCCCCCSEECSSCCC----SSCCCHHHHHHHHHHCC--T-TGGGSCCCSSCHHHHHHHHHHHTC-SS--CCGGGEEE--E
T ss_pred             cccCCCceEEECCCC----CCCCCHHHHHHHHHHhh--c-chhcCCCCCCcHHHHHHHHHHhcc-cC--CCcceEEe--c
Confidence            345689999999973    33677788888887775  2 344566888999999999999943 33  56799999  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecC
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC  186 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~  186 (407)
                      +|+++++.++      +..||+|++++|+|..|...++.+|++++.+|++ ++. ..+ + .   ..  ++++++++ ++
T Consensus        83 ~G~~~~l~~l------~~~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~-~~~-~~~-~-~---~~--~~~~~l~l-~n  146 (334)
T d2f8ja1          83 NGADEIIYVM------MLMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLT-KDL-RIP-E-V---NV--GEGDVVFI-PN  146 (334)
T ss_dssp             EHHHHHHHHH------HHHSSEEEECSSCCHHHHHHHHHHTCCEEECCCC-TTS-CCC-C-C---CC--CTTEEEEE-ES
T ss_pred             CcchhHHHHH------hhhccccccccccccccccchhccCCcccccccc-ccc-ccc-c-c---cc--ccceEEEe-cc
Confidence            9999998776      2357999999999999999999999999999984 322 221 1 1   11  45666666 99


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435          187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS  266 (407)
Q Consensus       187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  266 (407)
                      ||||||.+++.+++.++    .++++++|+||+|.++.....   ..    .....+++++++||||.++++|+|+||+ 
T Consensus       147 P~NPtG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~---~~----~~~~~~~~i~~~S~SK~~~~~G~R~G~~-  214 (334)
T d2f8ja1         147 PNNPTGHVFEREEIERI----LKTGAFVALDEAYYEFHGESY---VD----FLKKYENLAVIRTFSKAFSLAAQRVGYV-  214 (334)
T ss_dssp             SCTTTCCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCCC---GG----GGGTCSSEEEEEESTTTSSCTTTCEEEE-
T ss_pred             cccccceeecHHHhhcc----ccceeEEeecccchhhccccc---cc----ccccCceEEEEecCccccchhhhhhhhc-
Confidence            99999999998877664    568999999999987765432   11    1244678999999999999999999999 


Q ss_pred             EeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 015435          267 IVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS  346 (407)
Q Consensus       267 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  346 (407)
                       +++     +.+...+.....  +.+.+..++.++..++.+.       ++.++.+++++++++.+.+.|++.|    +.
T Consensus       215 -~~~-----~~~i~~l~~~~~--~~~~s~~~~~~a~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~g----~~  275 (334)
T d2f8ja1         215 -VAS-----EKFIDAYNRVRL--PFNVSYVSQMFAKVALDHR-------EIFEERTKFIVEERERMKSALREMG----YR  275 (334)
T ss_dssp             -EEC-----HHHHHHHHHHSC--TTCSCHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHT----CE
T ss_pred             -ccc-----hHHHHHHHHhhc--ccccchhhhhhcccccccc-------cchhhHHHHHHHHHHHHHHHHHHCC----Ce
Confidence             576     455555655543  3467888888888888765       5567778889999999999999998    77


Q ss_pred             cccCCceeEEecCC---CHHHHHHhHhhccEEEcCCC---eEEecCCCCCChhHHHHHHHH
Q 015435          347 HIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSDG---RISMAGLSSKTVPHLTDAIHA  401 (407)
Q Consensus       347 ~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~gg---Ris~~~~~~e~i~~~~~~l~~  401 (407)
                      +.++.|+ |.|+.+   +.+.+.+.|.++||.+.+..   |||++  +.+|+++++++|++
T Consensus       276 ~~~~~g~-f~~~~~~~~~~~~~~~~L~~~GI~vr~~~~~vRis~g--~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         276 ITDSRGN-FVFVFMEKEEKERLLEHLRTKNVAVRSFREGVRITIG--KREENDMILRELEV  333 (334)
T ss_dssp             ECCCCSS-EEEEECCHHHHHHHHHHHHHTTEECEEETTEEEEECC--CHHHHHHHHHHHHH
T ss_pred             ECCCCce-EEEEECCCCCHHHHHHHHHHCCCEECCCCCeEEEEcC--CHHHHHHHHHHHhc
Confidence            7788776 566655   33445566667899987643   99997  56778888888875

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8e-37  Score=284.67  Aligned_cols=314  Identities=19%  Similarity=0.231  Sum_probs=233.8

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG  109 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~  109 (407)
                      .+..|.|+.++.  +.+  .+..+        .  .....+| |..+..+||+++++++ +     +++++|++  |+|+
T Consensus        26 ~~~~i~L~~ne~--p~~--~~~~~--------~--~~~l~rY-Pd~~~~~Lr~~ia~~~-g-----v~pe~I~i--t~Gs   82 (354)
T d1fg7a_          26 GNGDVWLNANEY--PTA--VEFQL--------T--QQTLNRY-PECQPKAVIENYAQYA-G-----VKPEQVLV--SRGA   82 (354)
T ss_dssp             TTCSEECSSCCC--SSC--CCCCC--------C--CCCTTSC-CCSSCHHHHHHHHHHH-T-----SCGGGEEE--ESHH
T ss_pred             CCCCEEeeCCCC--CCC--CCHHH--------H--HHHHhcC-CCCcHHHHHHHHHHHh-C-----CChHHeee--ccCc
Confidence            456788887752  122  12221        1  2234567 6677789999999998 4     45799999  9999


Q ss_pred             ccHHHHHHHHHHhhcCCC-eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435          110 TGSLRVGAEFLARHYHQL-TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH  188 (407)
Q Consensus       110 t~a~~~~~~~~~~~~~gd-~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~  188 (407)
                      ++++.+++  ...+.+|| .|+++.|+|..|...++..|.+++.++.  .+++.+|++++++.+.   +++++++ ++||
T Consensus        83 ~eai~~~~--~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~--~~~~~~d~~~l~~~~~---~~~~v~~-~~pn  154 (354)
T d1fg7a_          83 DEGIELLI--RAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPT--LDNWQLDLQGISDKLD---GVKVVYV-CSPN  154 (354)
T ss_dssp             HHHHHHHH--HHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCC--CTTSCCCHHHHHTSCT---TEEEEEE-ESSC
T ss_pred             hHHHHHHH--HHhhccccccccccccccccchhhhhccCceeecccc--ccccccchhhhhhccc---ccceeec-cCCC
Confidence            99999995  44477998 5888999999999999999999999988  4468899999887553   4566665 9999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435          189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV  268 (407)
Q Consensus       189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v  268 (407)
                      ||||.+++.++++.+.+.+++ +.++|+||+|.+|..+..   ..   ......+++++++||||.||++|+|+||+  +
T Consensus       155 NPtG~~~~~~~~~~~~~~~~~-~~~~iidd~~~~f~~~~~---~~---~~~~~~~~~iv~~S~SK~~~laGlRiGy~--i  225 (354)
T d1fg7a_         155 NPTGQLINPQDFRTLLELTRG-KAIVVADEAYIEFCPQAS---LA---GWLAEYPHLAILRTLSKAFALAGLRCGFT--L  225 (354)
T ss_dssp             TTTCCCCCHHHHHHHHHHHTT-TCEEEEECTTGGGSGGGC---SG---GGTTTCTTEEEEEESSSTTCCGGGCCEEE--E
T ss_pred             ccceeEeeecccccccccccc-cccccccccchhhccccc---cc---hhhcccccceEEeCCccccCCCccccccc--c
Confidence            999999999999999888764 667888888888875421   11   12345678999999999999999999999  5


Q ss_pred             ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 015435          269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI  348 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  348 (407)
                      ++     ++++..+......  .+.+.+.+..+..++.+..     ........+++.++++.+.+.+.+++.   ....
T Consensus       226 ~~-----~~~i~~l~~~~~~--~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~r~~l~~~l~~~~~---~~~~  290 (354)
T d1fg7a_         226 AN-----EEVINLLMKVIAP--YPLSTPVADIAAQALSPQG-----IVAMRERVAQIIAEREYLIAALKEIPC---VEQV  290 (354)
T ss_dssp             EC-----HHHHHHHHHHSCS--SCSCHHHHHHHHHHTSHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSTT---EEEE
T ss_pred             cc-----chhhhhhhhhcCc--cchhhHHHHHHHHHHhhhc-----cccccccchhhhhHHHHHHHHHHhCCC---ccee
Confidence            65     4455555555433  3566667777766666543     134556667788889999999999873   4555


Q ss_pred             cCCceeEEecCC-CHHHHHHhHhhccEEEcCCC---------eEEecCCCCCChhHHHHHHH
Q 015435          349 IKQIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG---------RISMAGLSSKTVPHLTDAIH  400 (407)
Q Consensus       349 ~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg---------Ris~~~~~~e~i~~~~~~l~  400 (407)
                      .|.+++|+|+++ +.+.+.+.|.++||.+++++         |||++  +++++++++++|+
T Consensus       291 ~p~~~~f~~~~~~~~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisig--t~ee~~~~l~aLk  350 (354)
T d1fg7a_         291 FDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG--TREESQRVIDALR  350 (354)
T ss_dssp             CCCSSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTTEEEEECC--CHHHHHHHHHHHH
T ss_pred             CCCCceEEEEeCCCHHHHHHHHHHCCcEEecCCCCCCCCCEEEEEeC--CHHHHHHHHHHHh
Confidence            677888999866 44455555666899998752         99987  6678888888876

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=100.00  E-value=8.1e-34  Score=267.35  Aligned_cols=327  Identities=13%  Similarity=0.053  Sum_probs=228.0

Q ss_pred             CCCeeeeeeeeeecCCCccccch-hHHHHHHHHhc-cccccccCCCCCC----cHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLN-VVRKAEQLLVN-DQSRVKEYLPIVG----LVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~y~~~~g----~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      ..-++|+..|.|      ...++ +.+.......- ...+..+|....+    .++|++.++++.....+...++.+|++
T Consensus        55 ~~~~~~~~~gdp------~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~Ivv  128 (425)
T d2hoxa1          55 QGCSADVASGDG------LFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF  128 (425)
T ss_dssp             TTCCEECCSCCC------GGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE
T ss_pred             CCceeeCCCCCC------CCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEE
Confidence            356788888875      22222 22222222210 1223444644332    479999999988554555455568999


Q ss_pred             eecCCcccHHHHHHHHHHh------hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC
Q 015435          104 VQCLSGTGSLRVGAEFLAR------HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS  177 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~------~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~  177 (407)
                        ++|+++++.+++..++-      +.|||+|+++.|+|+.|....+.+|.+...++.        |.+.+++.++  ++
T Consensus       129 --G~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~~~--------D~~~~~~~~~--~~  196 (425)
T d2hoxa1         129 --GVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAG--------NAANYVNVSN--PE  196 (425)
T ss_dssp             --ESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEEE--------EGGGGTTCSC--GG
T ss_pred             --CCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCccCC--------CHHHHHhhCC--CC
Confidence              99999999998533321      468999999999999999999998887766654        5566666554  45


Q ss_pred             CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc
Q 015435          178 GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL  257 (407)
Q Consensus       178 ~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~  257 (407)
                      ++++++ ++||||||.+..          +..+++.+|.||+|.+..+.+          +....+++|+++||||.||+
T Consensus       197 ~~ii~l-~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~~----------~~~~~~~~Ivl~S~SK~fgl  255 (425)
T d2hoxa1         197 QYIEMV-TSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTP----------IKYKADEDILLFTMSKFTGH  255 (425)
T ss_dssp             GEEEEE-ESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSC----------CCSCBCCSEEEEEHHHHTSC
T ss_pred             ceEEEE-ECCCCCCcchhh----------hhhhCCEEEEeccccCccccc----------hhhhcCCeEEEEeCHHhccC
Confidence            666666 999999999742          344689999999997655432          23345789999999999999


Q ss_pred             cCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhH-----HhHHHHHHHHHHHHHHHHHHH
Q 015435          258 YGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMY-----KEWTLELKAMADRIISMRQQL  332 (407)
Q Consensus       258 ~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~l  332 (407)
                      +|+|+||+  +++++.+.++    +.........+++.++|.++..+++.....     ....+..+..++.++++++.+
T Consensus       256 aGlRiGw~--i~~~~~i~~~----~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l  329 (425)
T d2hoxa1         256 SGSRFGWA--LIKDESVYNN----LLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI  329 (425)
T ss_dssp             GGGCCEEE--EECCHHHHHH----HHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHH
T ss_pred             cchheeeE--EeCCHHHHHH----HHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998  5777665444    444455556689999999998888643100     011235667788899999999


Q ss_pred             HHHHHhcCCCCCccc--------------ccCCceeEEecCC---CHHHHHHhHhhccEEEcCCC---------eEEecC
Q 015435          333 FDALSARGTPGDWSH--------------IIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSDG---------RISMAG  386 (407)
Q Consensus       333 ~~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~gg---------Ris~~~  386 (407)
                      .+.+.+.+.   +..              ..+..+.|.|+..   +.+++.++|+++||.+.||.         |||+..
T Consensus       330 ~~~L~~~~~---~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~~  406 (425)
T d2hoxa1         330 TALLDQSDR---FSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK  406 (425)
T ss_dssp             HHHHTTSSS---EECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS
T ss_pred             HHHHHhcCC---ceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhCCEEEEechhcCCCCCEEEEEecC
Confidence            999988763   221              1223334566533   23357788888999999862         999986


Q ss_pred             CCCCChhHHHHHHHHHHHh
Q 015435          387 LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       387 ~~~e~i~~~~~~l~~~l~~  405 (407)
                       ++|++++++++|+++++.
T Consensus       407 -~~e~ld~~l~rL~~~v~a  424 (425)
T d2hoxa1         407 -TQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             -CHHHHHHHHHHHHHHHTC
T ss_pred             -CHHHHHHHHHHHHHHHhc
Confidence             788899999999999864

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=8.6e-25  Score=203.48  Aligned_cols=289  Identities=12%  Similarity=0.086  Sum_probs=184.4

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY  156 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~  156 (407)
                      .+.+++.+|+++ +.       +++++  |+|+|+|+.+++  .+.+++||.|+++.++|.+....++..|++++.+|.+
T Consensus        49 ~~~~~~~~A~~~-g~-------e~~~~--t~g~t~a~~~~~--~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~  116 (364)
T d2e7ja1          49 HDFIHNQLPKFL-GC-------DVARV--TNGAREAKFAVM--HSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKT  116 (364)
T ss_dssp             HHHHHTHHHHHT-TS-------SEEEE--ESSHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCC
T ss_pred             HHHHHHHHHHHh-Cc-------CEEEE--ECcHHHHHHHHH--HHHhCCCcEEEeecccccccchHHHhccceEEEeeec
Confidence            466788899988 54       78999  999999999984  5558899999999999998888899999999999997


Q ss_pred             cCCCCCcChhhHHHHHHcCC--CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435          157 DPATRGLNFQGLLEDLRAAP--SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS  234 (407)
Q Consensus       157 ~~~~~~~d~~~l~~~i~~~~--~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~  234 (407)
                      +..++.+|++++++.+++..  ....++++++|+||||.+.+   +++|+++|++||+++++|++|+..... .  +   
T Consensus       117 ~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~~-~--~---  187 (364)
T d2e7ja1         117 DYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP-V--S---  187 (364)
T ss_dssp             CTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC-C--C---
T ss_pred             cccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhhh-h--c---
Confidence            66667899999999997432  12334444899999999875   778899999999999999998644332 1  1   


Q ss_pred             HHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh----hcccCCCChhHHHHHHHHhcChhh
Q 015435          235 VRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI----RPMYSSPPIHGASIVATILKDSTM  310 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~  310 (407)
                      ...+    ...++++|++|.++.+| ++||+  +.+ ++..+.+........    ..............+...+...  
T Consensus       188 ~~~~----g~D~~~~S~~K~~~~~g-~~g~l--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--  257 (364)
T d2e7ja1         188 LKEI----GADFIVGSGHKSMAASG-PIGVM--GMK-EEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHV--  257 (364)
T ss_dssp             HHHH----TCSEEEEEHHHHSSCCS-SCEEE--EEC-TTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH--
T ss_pred             cccc----ccceeeeccccccCCCC-CEEEE--EEC-HHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHH--
Confidence            1111    23478889999999776 78988  455 332222211110000    0000112222222332222211  


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--cC--CceeEEecCC----------CHHHHHHhHhhccEEE
Q 015435          311 YKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI--IK--QIGMFTFTGL----------NSEQVAFMTKEYHIYM  376 (407)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~--~~~~~~~~~~----------~~~~~~~~l~~~gi~~  376 (407)
                          .+..+...+.+ +++.++.+.+++.|.    ...  .+  ....+.....          ........+.+.++..
T Consensus       258 ----~~~~~~~~~~~-~~~~~~~~~l~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  328 (364)
T d2e7ja1         258 ----RERIKRWDEEV-EKARRFAAEMEKLGI----KQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHG  328 (364)
T ss_dssp             ----HHHGGGHHHHH-HHHHHHHHHHHHTTC----EEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEEC
T ss_pred             ----HHHHHHHHHHH-HHHHHHHHHHHHcCC----eecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCce
Confidence                12222333333 455677788888773    322  11  1122222110          1123344555567765


Q ss_pred             cCCC-----eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          377 TSDG-----RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       377 ~~gg-----Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ...|     |++....+++++++++++|++++++
T Consensus       329 ~~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~  362 (364)
T d2e7ja1         329 IKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK  362 (364)
T ss_dssp             SCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcceEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence            4433     5554335889999999999999886

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.92  E-value=2.9e-25  Score=206.50  Aligned_cols=291  Identities=14%  Similarity=0.088  Sum_probs=185.5

Q ss_pred             CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEe-c-CCCCCChHHHHhhcCcee
Q 015435           73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYI-P-QPTWGNHPKVFTLAGLSV  150 (407)
Q Consensus        73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~-~-~p~y~~~~~~~~~~G~~~  150 (407)
                      +..+.+++++..++.+.+.     ..+++++  |+|+++++..++  . .+.+||.|++ + .|+|..+...++..|+++
T Consensus        48 ~~~~~~~l~~~~~~~~~~~-----~~e~~~~--~~~~~~a~~~~l--~-al~~~~~vi~~~~~~~~~~~~~~~~l~g~~~  117 (366)
T d2aeua1          48 SSYFAEKVNEYGLKHLGGD-----ENDKCVG--FNRTSSAILATI--L-ALKPKKVIHYLPELPGHPSIERSCKIVNAKY  117 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-----TTEEEEE--ESSHHHHHHHHH--H-HHCCSEEEEECSSSSCCTHHHHHHHHTTCEE
T ss_pred             chhhHHHHHHHHHHHccCC-----CccEEEE--eCCHHHHHHHHH--H-HhCCCCEEEEecCCCcchhHHHHHHhcCCeE
Confidence            4456778888888888432     1368888  999999998883  3 3567776654 4 489999999999999875


Q ss_pred             eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435          151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA  230 (407)
Q Consensus       151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~  230 (407)
                      +  +.       -|+++++++++  ++++++++ ++|+||+  +++.+++++|+++|++||+++|+||+|....+.....
T Consensus       118 v--~~-------~d~e~l~~~i~--~~tk~i~~-~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~  183 (366)
T d2aeua1         118 F--ES-------DKVGEILNKID--KDTLVIIT-GSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQ  183 (366)
T ss_dssp             E--EE-------SCHHHHHTTCC--TTEEEEEE-CBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTC
T ss_pred             E--CC-------CCHHHHHHhcC--CCceEEEE-EecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCccccccccccC
Confidence            3  33       17899999887  66777777 8899985  4568899999999999999999999997655432111


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhh
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTM  310 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (407)
                      . ...    . ....++++|+||.+  +|+|+||+  +++     ..+.+.+....+...++++++.+.++...++....
T Consensus       184 ~-~~~----~-~~~di~~~S~sK~~--~g~~~G~i--~~~-----~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~  248 (366)
T d2aeua1         184 P-PAL----K-LGADLVVTSTDKLM--EGPRGGLL--AGK-----KELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNL  248 (366)
T ss_dssp             C-CHH----H-HTCSEEEEETTSSS--SSCSCEEE--EEE-----HHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCH
T ss_pred             C-CHh----h-cCceEEEecccccc--cccceeEE--Eec-----HHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccH
Confidence            1 111    1 12358889999976  58999999  455     44555565555555567777788887777653221


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC----------CHHHHHHhHhhccEEEcCC-
Q 015435          311 YKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----------NSEQVAFMTKEYHIYMTSD-  379 (407)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~g-  379 (407)
                       .++++..++.++......+.+......... .......+.+.++.|.+.          +.+++.++++++||.+.|+ 
T Consensus       249 -~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~  326 (366)
T d2aeua1         249 -ERIRKAFERAKNFDLSKIEKLNKELKAIDD-NINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVA  326 (366)
T ss_dssp             -HHHHHHHHHHHHCCCHHHHHHHHHHTTTCT-TEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTS
T ss_pred             -HHHHHHHHHHHHHHHHHHhhhhcccccccc-ccCcccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEECC
Confidence             111222222221111222233333222211 002223334455555422          2346778999999999885 


Q ss_pred             ----C----eEEecCCCCC--ChhHHHHHHHHHHH
Q 015435          380 ----G----RISMAGLSSK--TVPHLTDAIHAAVT  404 (407)
Q Consensus       380 ----g----Ris~~~~~~e--~i~~~~~~l~~~l~  404 (407)
                          +    |||++..+.+  +.+.+.+.|.+.++
T Consensus       327 ~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK  361 (366)
T d2aeua1         327 GMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIK  361 (366)
T ss_dssp             SSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeccccchhhCCHHHHHHHHHHHHH
Confidence                2    8998752222  34666666666554

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3e-23  Score=194.37  Aligned_cols=336  Identities=13%  Similarity=0.091  Sum_probs=219.8

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc-----CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE-----YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTT  103 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~  103 (407)
                      +++++|||++..+   .|....+.+++++.+++. .......     +....-+.++.+.+++++ +.       +.+++
T Consensus        43 dG~~~l~f~s~dY---LGl~~hp~v~~a~~~a~~-~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~-g~-------e~al~  110 (401)
T d1fc4a_          43 DGSHVINFCANNY---LGLANHPDLIAAAKAGMD-SHGFGMASVRFICGTQDSHKELEQKLAAFL-GM-------EDAIL  110 (401)
T ss_dssp             TSCEEEECCCSCT---TSCTTCHHHHHHHHHHHH-HHCSCCCSCHHHHCCBHHHHHHHHHHHHHH-TC-------SEEEE
T ss_pred             CCCEEEEEEcccc---ccccCCHHHHHHHHHHHH-HhCCCcccceeeccCcHHHHHHHHHHHHhh-cC-------CceEE
Confidence            5688999998776   564556678888777775 1111110     111234668899999988 64       77888


Q ss_pred             eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEE
Q 015435          104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL  183 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i  183 (407)
                        +++|++|+..++  .....++|.|++....|..+...+...+.++..++..|    .-+++.+.+...+......+++
T Consensus       111 --~~SG~~An~~~i--~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~d----~~~le~~~~~~~~~~~~~~liv  182 (401)
T d1fc4a_         111 --YSSCFDANGGLF--ETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANND----MQELEARLKEAREAGARHVLIA  182 (401)
T ss_dssp             --ESCHHHHHHTTH--HHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTC----HHHHHHHHHHHHHTTCSSEEEE
T ss_pred             --ecchhhhhHHHH--HHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCCC----hHHHHHHHHHhhhcccCceEEE
Confidence              999999999984  44477999999999999999998999999888876521    1244444444443333333444


Q ss_pred             ecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435          184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG  263 (407)
Q Consensus       184 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  263 (407)
                      +....+..|.+.   ++++|.++|++||++||+||+++.+..+.....  ....+....+..++++|++|.++  |...|
T Consensus       183 ~egv~s~~G~~~---~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G--~~~~~~~~~~~dii~~tl~Ka~g--g~~Gg  255 (401)
T d1fc4a_         183 TDGVFSMDGVIA---NLKGVCDLADKYDALVMVDDSHAVGFVGENGRG--SHEYCDVMGRVDIITGTLGKALG--GASGG  255 (401)
T ss_dssp             EESEETTTTEEC---CHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCC--HHHHTTCTTCCSEEEEESSSTTC--SSSCE
T ss_pred             EcCCCCCCCchh---hhhHHHHHHhhcCcEEEehhhhccccccCCCCc--cchhccCCCCCeEEEeecccccc--cCCcc
Confidence            355555567654   488888889999999999999988877632111  12222233456688999999985  33336


Q ss_pred             eeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015435          264 ALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG  343 (407)
Q Consensus       264 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  343 (407)
                      ++   +.++++.+.+......+.  +....++....++...++..       ...++++++++++.+++.+.+...+   
T Consensus       256 ~v---~g~~~~~~~l~~~~~~~~--~s~~l~p~~~~aa~~~l~~~-------~~~~~~~~~l~~~~~~~~~~l~~~g---  320 (401)
T d1fc4a_         256 YT---AARKEVVEWLRQRSRPYL--FSNSLAPAIVAASIKVLEMV-------EAGSELRDRLWANARQFREQMSAAG---  320 (401)
T ss_dssp             EE---EECHHHHHHHHHHCHHHH--HSCCCCHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             cc---cCCHHHHHHHHcCChhhh--hcCCCCHHHHHHHHhhhccc-------ccCHHHHHHHHHHHHHHHhhhcccC---
Confidence            65   566665554444333332  22244444444555444422       2235678899999999999999988   


Q ss_pred             CcccccCCceeEE-ecCCCHH--HHHHhHhhccEEEcC-------CC----eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          344 DWSHIIKQIGMFT-FTGLNSE--QVAFMTKEYHIYMTS-------DG----RISMAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       344 ~~~~~~~~~~~~~-~~~~~~~--~~~~~l~~~gi~~~~-------gg----Ris~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                       +......+.++. +++-...  .+.+.|.++||.+.+       -|    ||++.. +++|||+++++.|+++.+++|
T Consensus       321 -~~~~~~~~pIv~v~~~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg  398 (401)
T d1fc4a_         321 -FTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG  398 (401)
T ss_dssp             -CCBCCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             -CccCCCCCCEEEEEECCHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence             444444444432 2332221  233445568999764       23    787754 689999999999999999886

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.9e-22  Score=187.92  Aligned_cols=328  Identities=15%  Similarity=0.112  Sum_probs=219.3

Q ss_pred             CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc----cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ----SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      .+++++||+...+   .|....+.+++++.+++.+-.    .....++...-+.++.+.+++++ +.       +..++ 
T Consensus        36 ~g~~~l~f~s~dY---LGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~-g~-------e~al~-  103 (383)
T d1bs0a_          36 DDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL-GY-------SRALL-  103 (383)
T ss_dssp             TTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH-TC-------SEEEE-
T ss_pred             CCeEEEEEEcccc---cccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc-CC-------CceEE-
Confidence            4578999998877   675667778888888875210    11111222334688999999988 64       67888 


Q ss_pred             ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEe
Q 015435          105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH  184 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~  184 (407)
                       +++|+.++..++  .....++|.|++....|.......+..+.+++.++.       .|++++++.+.+.+....++++
T Consensus       104 -~~SG~~an~~~i--~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h-------nd~~~le~~l~~~~~~~~~vv~  173 (383)
T d1bs0a_         104 -FISGFAANQAVI--AAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVT  173 (383)
T ss_dssp             -ESCHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEE
T ss_pred             -ecccchhhHHHH--HhhcCCCceEEeeccccHHHhhccccCCCcceEecc-------hHHHHHHHHhcccCCCceEEEe
Confidence             999999998884  445779999999999999999999999999888865       4888899888765555555666


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcce
Q 015435          185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGA  264 (407)
Q Consensus       185 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  264 (407)
                      ....+.+|.+.+   +.+|.++|++||+++++||+++....+.   .......... ....+++.|++|.+|..|   |+
T Consensus       174 e~v~s~~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~---~g~G~~~~~~-~~~~~~~~t~~ka~g~~G---g~  243 (383)
T d1bs0a_         174 EGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGE---QGRGSCWLQK-VKPELLVVTFGKGFGVSG---AA  243 (383)
T ss_dssp             ESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSG---GGCCHHHHTT-CCCSEEEEESSSTTSSCC---EE
T ss_pred             cCCCCCCCcccc---hhHHHHHHHhcCcEEEeecceeeeecCC---cccchHHHcC-Cccccccccccccccccc---cc
Confidence            889999999886   6666777999999999999998777653   2222222222 244567789999998765   77


Q ss_pred             eEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435          265 LSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD  344 (407)
Q Consensus       265 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  344 (407)
                      +   +.+.+..+.++........  ....++....++...++...     ....+..++++.++..++.+.+.++|    
T Consensus       244 v---~~~~~~~~~l~~~~~~~~~--s~~~~p~~~aa~~~a~~~~~-----~~~~~~~~~~l~~~~~~~~~~l~~~g----  309 (383)
T d1bs0a_         244 V---LCSSTVADYLLQFARHLIY--STSMPPAQAQALRASLAVIR-----SDEGDARREKLAALITRFRAGVQDLP----  309 (383)
T ss_dssp             E---EECHHHHHHHHHHCHHHHS--SBCCCHHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHHHHHHTTSS----
T ss_pred             c---ccchhHHHHHHhhchhhhh--cccccchHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHhcC----
Confidence            6   4444544444432222221  11333333333333332111     02345677888889999999999888    


Q ss_pred             cccccCCceeE-EecCCCH--HHHHHhHhhccEEEcC-------CC----eEEecC-CCCCChhHHHHHHHHH
Q 015435          345 WSHIIKQIGMF-TFTGLNS--EQVAFMTKEYHIYMTS-------DG----RISMAG-LSSKTVPHLTDAIHAA  402 (407)
Q Consensus       345 ~~~~~~~~~~~-~~~~~~~--~~~~~~l~~~gi~~~~-------gg----Ris~~~-~~~e~i~~~~~~l~~~  402 (407)
                      +......+.+. ++++-..  ..+.+.|.++||.+.+       -|    ||++.. +++|||+++++.|.++
T Consensus       310 ~~~~~~~s~Ii~v~~g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         310 FTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             CEECSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             CccCCCCCCEEEEEECCHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            55444333322 2333222  2344555568998854       23    777764 6889999999988764

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3.2e-22  Score=187.83  Aligned_cols=291  Identities=16%  Similarity=0.171  Sum_probs=186.2

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH--hhcCCCeEEecCCCCCChHHHHh---hcCceee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA--RHYHQLTIYIPQPTWGNHPKVFT---LAGLSVK  151 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~--~~~~gd~Vi~~~p~y~~~~~~~~---~~G~~~~  151 (407)
                      ++++|+.+++++ +.     ++++|++  |+|+|+++..++....  .+.+||+|++.++.|+.+...++   ..|++++
T Consensus        50 ~~~~R~~iA~~l-g~-----~~~~I~~--~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~  121 (391)
T d1p3wa_          50 VDIARNQIADLV-GA-----DPREIVF--TSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVT  121 (391)
T ss_dssp             HHHHHHHHHHHH-TC-----CGGGEEE--ESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHc-CC-----CCCcEEE--ECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEE
Confidence            457889999988 43     3589999  9999999988854332  24699999999999998866554   5699999


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      .+|.+  ..+.+|+++++++++  ++++++++ ++++||||.+++   +++|+++|++||+++++|.+++..... .+. 
T Consensus       122 ~v~~~--~~~~~d~~~~~~~i~--~~T~lv~i-s~~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~~~-~d~-  191 (391)
T d1p3wa_         122 YLAPQ--RNGIIDLKELEAAMR--DDTILVSI-MHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP-IDL-  191 (391)
T ss_dssp             EECCC--TTSCCCHHHHHHHCC--TTEEEEEC-CSBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTBTTBC-CCT-
T ss_pred             EeCCC--CCCeEcHHHHHHhCC--CCcEEEEE-ECCCCCCeeECC---HHHHHHHhccCCcEEEEeeccccCCcc-ccc-
Confidence            99983  456789999999998  77888777 999999999887   667888899999999999987544321 111 


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhh---hhhcccCCCChhHHHHHHHHhcCh
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL---VIRPMYSSPPIHGASIVATILKDS  308 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~  308 (407)
                              ...+..+++.|.+|.+|.+|  +|++  +...+. ..........   ..+......+.....++...+.. 
T Consensus       192 --------~~~~~D~~~~s~~k~~g~~g--~g~~--~~~~~~-~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~-  257 (391)
T d1p3wa_         192 --------SQLKVDLMSFSGHKIYGPKG--IGAL--YVRRKP-RVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI-  257 (391)
T ss_dssp             --------TTSCCSEEEEESTTTTSCSS--CEEE--EECBTT-BCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHH-
T ss_pred             --------hhccccccccccccccCCCc--eEEE--EEecch-hcccCCcccCCccccCcccCcchhhhhhhhhhhhhH-
Confidence                    11234577789999987666  4666  344211 1110000000   00111112333233332222221 


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CcccccCCceeEEecCCCHHHHHHhHhhccEEEcCC------
Q 015435          309 TMYKEWTLELKAMADRIISMRQQLFDALSARGTPG---DWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD------  379 (407)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g------  379 (407)
                           ..+......+++++.++.+.+.|...+...   ......+....+.+.+...+.+...+.  ++.++.|      
T Consensus       258 -----~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~v~~G~~c~~~  330 (391)
T d1p3wa_         258 -----AKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALK--DLAVSSGSACTSA  330 (391)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTSCHHHHHHHTT--TEECBCCCC----
T ss_pred             -----HHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCCChHHHHHHhC--CCEEEccccccCC
Confidence                 113344445677778888888887665210   000011222334455667766555544  3443321      


Q ss_pred             -------------------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          380 -------------------G--RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       380 -------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                                         |  |||++. .|++|++++++.|+++++++
T Consensus       331 ~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~l  379 (391)
T d1p3wa_         331 SLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL  379 (391)
T ss_dssp             --CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence                               2  999875 36799999999999998764

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.90  E-value=4.2e-22  Score=184.61  Aligned_cols=331  Identities=15%  Similarity=0.052  Sum_probs=218.6

Q ss_pred             CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccc----cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR----VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      +++++||++..+   .|....+.+++++.+.+.+-...    ..-++...-+.++.+++|+++ +.       +..++  
T Consensus        44 ~~~~~~FsSndY---LGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~-g~-------e~all--  110 (396)
T d2bwna1          44 KQDITVWCGNDY---LGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH-QK-------EAALV--  110 (396)
T ss_dssp             EEEEEECSCSCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT-TC-------SEEEE--
T ss_pred             CeEEEEEEcccc---cCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHh-CC-------Cceee--
Confidence            478999999988   67667778888888777621100    011112223678889999988 64       67877  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-CCCcEEEEe
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-PSGAIVLLH  184 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-~~~~~v~i~  184 (407)
                      .++|..|+..++..+....++|.|+...-.+.+..+.++..+.+++.++.+       |++++++.+... +..+.++++
T Consensus       111 ~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-------d~~~l~~l~~~~~~~~~~~iv~  183 (396)
T d2bwna1         111 FSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAF  183 (396)
T ss_dssp             ESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEE
T ss_pred             eecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeecc-------hHHHhhhHHhhhcccCceeEEE
Confidence            888888888875444445688988888889988999999999999888652       566676666532 344455555


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcce
Q 015435          185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGA  264 (407)
Q Consensus       185 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  264 (407)
                      ......+|.+.+   +.+|+++|++||++|++||+++-.+.+..... . ...+.......++++||||.+|..|   |+
T Consensus       184 egvySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G-~-~~~~~~~~~~di~~gTlsKa~g~~G---g~  255 (396)
T d2bwna1         184 ESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAG-V-AERDGLMHRIDIFNGTLAKAYGVFG---GY  255 (396)
T ss_dssp             ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCC-H-HHHHTCGGGCSEEEEESSSTTCSCC---EE
T ss_pred             EeeccCcccccc---cHhHHHHhhhhcceeeeccceeeeeecccccc-c-hhhcCCceeeeeeeecccccccccc---cc
Confidence            777777899776   77777789999999999999987766532212 1 1222223445688999999999776   66


Q ss_pred             eEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435          265 LSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD  344 (407)
Q Consensus       265 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  344 (407)
                      +   +.+++..+.++...+.+..  ....++....++.+.++-..     ....++.++++..+.+++.+.+...|    
T Consensus       256 v---~~~~~~i~~l~~~~~~~if--Stalpp~~~aa~~~al~i~~-----~~~~~~~r~~l~~~~~~~~~~l~~~g----  321 (396)
T d2bwna1         256 I---AASARMVDAVRSYAPGFIF--STSLPPAIAAGAQASIAFLK-----TAEGQKLRDAQQMHAKVLKMRLKALG----  321 (396)
T ss_dssp             E---EECHHHHHHHHHHCHHHHT--SBCCCHHHHHHHHHHHHHHT-----SHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             c---chhHHHHHHHHhhcchhhh--cccCcHHHHHHHHHHHHHhh-----cchHHHHHHHHHHHHHHHHHHHHhcC----
Confidence            6   5566655555443333331  11333333333333332110     02245567788888999999999888    


Q ss_pred             cccccCCceeEE-ecCCCH---HHHHHhHhhccEEEcCC-------C----eEEecC-CCCCChhHHHHHHHHH
Q 015435          345 WSHIIKQIGMFT-FTGLNS---EQVAFMTKEYHIYMTSD-------G----RISMAG-LSSKTVPHLTDAIHAA  402 (407)
Q Consensus       345 ~~~~~~~~~~~~-~~~~~~---~~~~~~l~~~gi~~~~g-------g----Ris~~~-~~~e~i~~~~~~l~~~  402 (407)
                      +......+.++. +++-..   +...++|+++||.+.+.       |    ||++.. ++++||++++++|+++
T Consensus       322 ~~~~~~~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         322 MPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             CCBCCCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence            454444344333 334322   23456788899987542       3    777754 6889999999999875

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.88  E-value=2.8e-22  Score=187.58  Aligned_cols=317  Identities=14%  Similarity=0.056  Sum_probs=193.1

Q ss_pred             cccchhHHHHHHHHhccccccccCCCC------CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPI------VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA  121 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~------~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~  121 (407)
                      +.|..+++++.+.+. +......|...      .-+.++|+.+++++ +.     ++++|++  |+|+|+++.+++  ..
T Consensus        18 ~~p~~v~ea~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~-----~~~~i~~--~~g~t~a~~~~~--~~   86 (381)
T d1elua_          18 ILPTVALEAITAMYG-YLQENGPFSIAANQHIQQLIAQLRQALAETF-NV-----DPNTITI--TDNVTTGCDIVL--WG   86 (381)
T ss_dssp             CCCHHHHHHHHHHHH-HHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT-TS-----CGGGEEE--ESSHHHHHHHHH--HH
T ss_pred             CCCHHHHHHHHHHHH-HhhcCCCccchhhHHHHHHHHHHHHHHHHHh-CC-----CcccEEE--ECChHHHhhhcc--hh
Confidence            556667766655553 11111112111      11456788888888 42     3478999  999999999884  33


Q ss_pred             h-hcCCCeEEecCCCCCChHHHH----hhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCC
Q 015435          122 R-HYHQLTIYIPQPTWGNHPKVF----TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPT  196 (407)
Q Consensus       122 ~-~~~gd~Vi~~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~  196 (407)
                      . +.+||+|+++++.|+.....+    +..|+.++.+|.........+.+.+++.+.  ++++++++ ++++||||++.+
T Consensus        87 l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~--~~t~~v~i-~~~~n~tG~~~~  163 (381)
T d1elua_          87 LDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG--PKTRLVIL-SHLLWNTGQVLP  163 (381)
T ss_dssp             SCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC--TTEEEEEE-ESBCTTTCCBCC
T ss_pred             hhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhc--cccccccc-ccccccccccch
Confidence            3 469999999999998665543    457999999987422212222344444444  55667666 899999999988


Q ss_pred             HHHHHHHHHHHHHc----CceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecCh
Q 015435          197 LEQWEQIRQLMRSK----GLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTE  272 (407)
Q Consensus       197 ~~~l~~i~~~~~~~----~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~  272 (407)
                      .   ++|.++|+++    ++++++|.+++..... .+         ....+..+++.|+.|.++.| .++|++  ..+ +
T Consensus       164 ~---~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~-~~---------~~~~~~D~~~~s~~K~~~~p-~G~g~l--~~~-~  226 (381)
T d1elua_         164 L---AEIMAVCRRHQGNYPVRVLVDGAQSAGSLP-LD---------FSRLEVDYYAFTGHKWFAGP-AGVGGL--YIH-G  226 (381)
T ss_dssp             H---HHHHHHHHHCCSSSCCEEEEECTTTBTTBC-CC---------TTTSCCSEEEEESSSTTCCC-TTCEEE--EEC-T
T ss_pred             h---hHHHHHHhhccccccccccccccccccccc-cc---------cccccccccccccccccccc-chhhHH--Hhh-H
Confidence            5   4566668774    6999999987533221 11         12234568899999998743 456777  344 2


Q ss_pred             hhHHHHHHHHhh------------------hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          273 DVASRVESQLKL------------------VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       273 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                      +..+++......                  ..+....+++...+.++.++++....    ....+...++..++++++.+
T Consensus       227 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~----~g~~~~~~~~~~~~~~~l~~  302 (381)
T d1elua_         227 DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQR----QGTAEERYQAICQRSEFLWR  302 (381)
T ss_dssp             TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHH----hcccccchhhhhhHHHHHHH
Confidence            211111100000                  00111224444444444444432210    01123445777788899999


Q ss_pred             HHHhcCCCCCcccc---cCCceeEEec---CCCHHHHHHhHhhccEEEcCC----C-eEEecC-CCCCChhHHHHHHHHH
Q 015435          335 ALSARGTPGDWSHI---IKQIGMFTFT---GLNSEQVAFMTKEYHIYMTSD----G-RISMAG-LSSKTVPHLTDAIHAA  402 (407)
Q Consensus       335 ~l~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~g----g-Ris~~~-~~~e~i~~~~~~l~~~  402 (407)
                      .|++++.   +...   .+.++++.|.   ..+.+.+.+.|+++||.+...    . |||++. .+++|+++++++|+++
T Consensus       303 ~L~~~~~---~~~~~~~~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         303 GLNQLPH---VHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADF  379 (381)
T ss_dssp             HHHHSTT---EEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             HHhcCCC---eEecCCCCccccEEEEEcCCCCCHHHHHHHHHhCCcEEEecCCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            9998853   4443   3456666543   345677777888899987542    2 999874 3679999999998763

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=2.8e-22  Score=183.92  Aligned_cols=299  Identities=13%  Similarity=0.084  Sum_probs=185.4

Q ss_pred             cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHh
Q 015435           68 VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFT  144 (407)
Q Consensus        68 ~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~  144 (407)
                      ...|++.+...+|++.+|+++ +.       +++++  ++|||+|+.+++  .....+||.+++..+.+..+..   ...
T Consensus        27 ~~~yg~~p~~~~le~~lA~~~-G~-------~~~~~--~~sGt~A~~~al--~a~~~~g~~~~~~~~~~~~~~~~~~~~~   94 (343)
T d1m6sa_          27 DDVYGEDPTINELERLAAETF-GK-------EAALF--VPSGTMGNQVSI--MAHTQRGDEVILEADSHIFWYEVGAMAV   94 (343)
T ss_dssp             CGGGTCCHHHHHHHHHHHHHT-TC-------SEEEE--ESCHHHHHHHHH--HHHCCTTCEEEEETTCHHHHSSTTHHHH
T ss_pred             CcccCCCHHHHHHHHHHHHHH-CC-------CeEEE--eCCHHHHHHHHH--HHHhccCCceeccccccceeeecccccc
Confidence            345878788999999999988 64       67888  999999999984  5557799999999987654433   334


Q ss_pred             hcCceeeEEEeecCCCCCcChhhHHHHHHcC----CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc
Q 015435          145 LAGLSVKTYRYYDPATRGLNFQGLLEDLRAA----PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY  220 (407)
Q Consensus       145 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~----~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y  220 (407)
                      ..+..++.++..   ....|++.+++.+...    +....+++.+.++|++|.+.+.+++.+|+++|+++|+++++|+++
T Consensus        95 ~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~  171 (343)
T d1m6sa_          95 LSGVMPHPVPGK---NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGAR  171 (343)
T ss_dssp             HTCCEEEEECEE---TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred             cccceeeccccc---cCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEecccc
Confidence            555566666542   3557999999888632    234556666888999999999999999999999999999999998


Q ss_pred             ccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHH
Q 015435          221 QGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASI  300 (407)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (407)
                      ..+....   ..........  .....+.+.+|  +..|.+.|+.   ....+....    ..........+.+.....+
T Consensus       172 ~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~--~~~g~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  237 (343)
T d1m6sa_         172 IFNASIA---SGVPVKEYAG--YADSVMFCLSK--GLCAPVGSVV---VGDRDFIER----ARKARKMLGGGMRQAGVLA  237 (343)
T ss_dssp             HHHHHHH---HCCCHHHHHH--TCSEEEEESSS--TTCCSSCEEE---EECHHHHHH----HHHHHHHHTCCCSSTHHHH
T ss_pred             ccccccc---cccchhhhcc--ccccccccccc--cccccccccc---cccHHHHhh----hHhhCcccccccchhHHHH
Confidence            7654321   0111111111  12233333333  3445666666   333432222    2222222222333333333


Q ss_pred             HHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC-----CCHHHHHHhHhhccEE
Q 015435          301 VATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG-----LNSEQVAFMTKEYHIY  375 (407)
Q Consensus       301 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~  375 (407)
                      +........        .....+...++...+.+.+..++.   .....+..+.++|+.     .+.+.+.+.|.++||.
T Consensus       238 a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~a~~l~~~L~~~Gi~  306 (343)
T d1m6sa_         238 AAGIIALTK--------MVDRLKEDHENARFLALKLKEIGY---SVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVL  306 (343)
T ss_dssp             HHHHHHHHH--------SSTTHHHHHHHHHHHHHHHHHHTC---BCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEE
T ss_pred             Hhhhhhhhh--------hHHHHHHHHHHHHHhhhHHHHhcc---CccCCCCCceEEEEEeCCCcccHHHHHHHHHHCCCE
Confidence            332221111        111223334444555555555542   233333344455553     3555666666778999


Q ss_pred             EcCCC----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          376 MTSDG----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       376 ~~~gg----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.+.+    ||+++. .++|+|++++++|+++++++
T Consensus       307 v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         307 ANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             CEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            98865    887653 57899999999999999875

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.1e-20  Score=177.79  Aligned_cols=318  Identities=15%  Similarity=0.140  Sum_probs=213.1

Q ss_pred             cccchhHHHHHHHHhccccccccCCCC------CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPI------VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA  121 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~------~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~  121 (407)
                      |.|..+++++.+.+.......++....      .-+++.|+.+++++ +..    .+++|++  |+|+|+++..++....
T Consensus        33 ~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l-~~~----~~~~i~~--~~~~T~~~~~~~~~~~  105 (405)
T d1jf9a_          33 QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI-NAR----SAEELVF--VRGTTEGINLVANSWG  105 (405)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT-TCS----CGGGEEE--ESSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHc-CCC----Ccccccc--cCcHHHHHHHHHhccc
Confidence            567777777766554111111111111      12667788999988 421    2378999  9999999988754322


Q ss_pred             --hhcCCCeEEecCCCCCChHHHH----hhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCC
Q 015435          122 --RHYHQLTIYIPQPTWGNHPKVF----TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDP  195 (407)
Q Consensus       122 --~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~  195 (407)
                        .+.+||.|++.+..|++....+    +..|++++.+|.+  .++.+|++.+++++.  ++++++.+ +..+|.||.+.
T Consensus       106 ~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~--~~g~~~~~~~~~~i~--~~t~lv~~-~~v~~~tG~~~  180 (405)
T d1jf9a_         106 NSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPTLFD--EKTRLLAI-THVSNVLGTEN  180 (405)
T ss_dssp             HHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC--TTSCBCGGGHHHHCC--TTEEEEEE-ESBCTTTCCBC
T ss_pred             ccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCC--CCCcCCHHHHHHhcc--CCcEEEEE-ecCCCcccccC
Confidence              3468999999999998866655    4669999999983  356789999999887  67777777 88999999977


Q ss_pred             CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH
Q 015435          196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA  275 (407)
Q Consensus       196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~  275 (407)
                      +   +++|+++|+++|+++++|.+++..... .  +   +.    ..+..+++.|..|.+|.+|  +|++  ..+     
T Consensus       181 p---i~~i~~~~~~~g~~~~vD~~q~~g~~~-i--d---~~----~~~~D~~~~s~hK~~Gp~G--~g~l--~v~-----  238 (405)
T d1jf9a_         181 P---LAEMITLAHQHGAKVLVDGAQAVMHHP-V--D---VQ----ALDCDFYVFSGHKLYGPTG--IGIL--YVK-----  238 (405)
T ss_dssp             C---HHHHHHHHHHTTCEEEEECTTTTTTSC-C--C---HH----HHTCSEEEEEGGGTTSCSS--CEEE--EEC-----
T ss_pred             c---hHHhhhHHHHcCCeeecccceeccccc-c--c---hh----hcCCceeeccccccccCCC--ceee--eec-----
Confidence            6   777788899999999999986533321 2  1   11    1234688999999987666  6777  355     


Q ss_pred             HHHHHHHhhh----------------------hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 015435          276 SRVESQLKLV----------------------IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLF  333 (407)
Q Consensus       276 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (407)
                      +.+...+...                      .+....+++..+..++..+++-..     ....+...++.....+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~L~~~~~  313 (405)
T d1jf9a_         239 EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS-----ALGLNNIAEYEQNLMHYAL  313 (405)
T ss_dssp             HHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHH
Confidence            3333222110                      011123555555655555554211     1134566677777778888


Q ss_pred             HHHHhcCCCCCccccc--CCceeEEe--cCCCHHHHHHhHhhccEEEcCC--------------C--eEEecC-CCCCCh
Q 015435          334 DALSARGTPGDWSHII--KQIGMFTF--TGLNSEQVAFMTKEYHIYMTSD--------------G--RISMAG-LSSKTV  392 (407)
Q Consensus       334 ~~l~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~l~~~gi~~~~g--------------g--Ris~~~-~~~e~i  392 (407)
                      +.++..+.   .....  ..++.+.+  .+.+.+.+...|+++||.++.|              |  |||++. .+++|+
T Consensus       314 ~~l~~~~~---~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDi  390 (405)
T d1jf9a_         314 SQLESVPD---LTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEV  390 (405)
T ss_dssp             HHHTTSTT---EEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHH
T ss_pred             hhhhcCCc---ccccCCcCcCcEEEEEcCCCCHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHH
Confidence            88877763   33222  23444443  3667777878888899998643              2  999875 367999


Q ss_pred             hHHHHHHHHHHHhhC
Q 015435          393 PHLTDAIHAAVTRMG  407 (407)
Q Consensus       393 ~~~~~~l~~~l~~~~  407 (407)
                      +++++.|+++++-+|
T Consensus       391 d~l~~~l~~i~r~~~  405 (405)
T d1jf9a_         391 DRLVTGLQRIHRLLG  405 (405)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999876

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=2.2e-19  Score=167.27  Aligned_cols=326  Identities=14%  Similarity=0.100  Sum_probs=199.7

Q ss_pred             eecCCCc-cccchhHHHHHHHHhcccccccc-CCC----CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHH
Q 015435           41 YRTEEGK-PLVLNVVRKAEQLLVNDQSRVKE-YLP----IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLR  114 (407)
Q Consensus        41 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-y~~----~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~  114 (407)
                      +.|+.+. |.|..+++++.+.+.+.....++ |..    ..-+++.|+++++++ +.     ++++|++  ++|+|+++.
T Consensus         4 yld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~-~~-----~~~~i~~--~~~~T~~l~   75 (376)
T d1eg5a_           4 YFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL-GV-----SPSEIFF--TSCATESIN   75 (376)
T ss_dssp             ECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH-TS-----CGGGEEE--ESCHHHHHH
T ss_pred             EEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHc-CC-----CCCcEEE--ECCHHHHHH
Confidence            4444442 45666666666666511111111 100    112556788999988 42     3589999  999999999


Q ss_pred             HHHHHH--HhhcCCCeEEecCCCCCChHHHH---hhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435          115 VGAEFL--ARHYHQLTIYIPQPTWGNHPKVF---TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN  189 (407)
Q Consensus       115 ~~~~~~--~~~~~gd~Vi~~~p~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N  189 (407)
                      .++...  ....+|+.|++....|..+...+   +..|++++.+|++  .++.+|+++++++++  ++++++++ +.++|
T Consensus        76 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~--~~~~id~~~l~~~i~--~~t~lv~i-s~v~~  150 (376)
T d1eg5a_          76 WILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD--SRGVVKLEELEKLVD--EDTFLVSI-MAANN  150 (376)
T ss_dssp             HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC--TTSCBCHHHHHHHCC--TTEEEEEE-ESBCT
T ss_pred             hhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCC--CCCeECHHHHHHhcC--CCceEEEE-ECCcc
Confidence            985433  23457788888888877766555   4569999999983  457899999999998  67777777 99999


Q ss_pred             CCCCCCCHHHHHHHHHHHHH--cCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEE
Q 015435          190 PTGVDPTLEQWEQIRQLMRS--KGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSI  267 (407)
Q Consensus       190 PtG~~~~~~~l~~i~~~~~~--~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  267 (407)
                      +||+..+.+++.++   |+.  .++++++|.++...... .+         ....+..++++|++|.+|.+|.++.|+  
T Consensus       151 ~tG~~~~~~~i~~~---~~~~~~~~~~~vD~~q~~g~~~-~d---------~~~~~~D~~~~s~~K~~gp~G~~~l~~--  215 (376)
T d1eg5a_         151 EVGTIQPVEDVTRI---VKKKNKETLVHVDAVQTIGKIP-FS---------LEKLEVDYASFSAHKFHGPKGVGITYI--  215 (376)
T ss_dssp             TTCBBCCHHHHHHH---HHHHCTTCEEEEECTTTTTTSC-CC---------CTTTCCSEEEEEGGGGTSCTTCEEEEE--
T ss_pred             ccceeeeehhhhhh---hhhcccCceeEEEeeecccccc-cc---------ccccCccceecccceeecCCCceeEEe--
Confidence            99998875555554   544  48999999986433321 11         112345689999999988777654444  


Q ss_pred             eecChhhHHHHHHHHhh---hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435          268 VCKTEDVASRVESQLKL---VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD  344 (407)
Q Consensus       268 v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  344 (407)
                       .++..    +......   .........+......+.......      ...............+++.+.+........
T Consensus       216 -~~~~~----~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  284 (376)
T d1eg5a_         216 -RKGVP----IRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA------VEELSEAAKHMEKLRSKLVSGLMNLGAHII  284 (376)
T ss_dssp             -CTTSC----CCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHHHHHHHHHTTTCEEC
T ss_pred             -ccCcc----cCCcccCCCCcccccCCcccchhhhhHHHHhhcc------ccchhhhhhhhhhhhhhhcccccccccccc
Confidence             33211    1110000   001111223334443333332211      122334445555667777777776542000


Q ss_pred             --cccccCCceeEEecCCCHHHHHHhHhhccEEEcCC-----------------C----------eEEecC-CCCCChhH
Q 015435          345 --WSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD-----------------G----------RISMAG-LSSKTVPH  394 (407)
Q Consensus       345 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g-----------------g----------Ris~~~-~~~e~i~~  394 (407)
                        ..........+.+.++..+.+...|+++||.+++|                 |          |||++. .+++|+++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~  364 (376)
T d1eg5a_         285 TPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDY  364 (376)
T ss_dssp             SCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHH
T ss_pred             ccccccccceeeeccCCCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHH
Confidence              11111222334455778888888889899988653                 1          899875 37799999


Q ss_pred             HHHHHHHHHHh
Q 015435          395 LTDAIHAAVTR  405 (407)
Q Consensus       395 ~~~~l~~~l~~  405 (407)
                      +++.|+++++-
T Consensus       365 l~~~L~~iv~~  375 (376)
T d1eg5a_         365 FLKKIEEILSF  375 (376)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999999874

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.82  E-value=4.1e-19  Score=167.44  Aligned_cols=338  Identities=15%  Similarity=0.077  Sum_probs=201.2

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ..+++++||+..|....+.| ..++++++++.+++.  .. .+...+..-...+.+.+.+.. ..      .+.+.+  +
T Consensus        48 D~~G~~ylD~~~~~~~~~lG-h~hp~i~~ai~~~~~--~~-~~~~~~~~~~~~la~~~~~~~-~~------~~~v~f--~  114 (427)
T d2gsaa_          48 DVDGNRYIDYVGTWGPAICG-HAHPEVIEALKVAME--KG-TSFGAPCALENVLAEMVNDAV-PS------IEMVRF--V  114 (427)
T ss_dssp             ETTSCEEEESSGGGTTTTTC-BTCHHHHHHHHHHHT--TC-SCCSSCCHHHHHHHHHHHHHS-TT------CSEEEE--E
T ss_pred             ECCCCEEEEechhHHHHhcc-CCcHHHHHHHHHHHH--hc-CccccchhHHHHHHHHHHhhC-Cc------cccccc--c
Confidence            45689999999887656667 566788888878775  21 221222221223333333333 11      268889  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc-ee--eEEEee-------cCC---CCCcChhhHHHHHH
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL-SV--KTYRYY-------DPA---TRGLNFQGLLEDLR  173 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~-~~--~~v~~~-------~~~---~~~~d~~~l~~~i~  173 (407)
                      ++|++|++.++++.+......+|+...-+|++.......... ..  ..+|..       .+.   ....|++.+++.+.
T Consensus       115 ~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~  194 (427)
T d2gsaa_         115 NSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFA  194 (427)
T ss_dssp             SSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHH
Confidence            999999999998887776677899988888876443321110 00  000000       000   01248899999998


Q ss_pred             cCCCCc-EEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435          174 AAPSGA-IVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY  251 (407)
Q Consensus       174 ~~~~~~-~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  251 (407)
                      +.+... ++++-+-..+ .|. .++++.+++|.++|++||++||+||+..+|.. +   ..+....+.- ..++++   +
T Consensus       195 ~~~~~iaavi~Epi~g~-~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~-g---~~~~~~~~gi-~PDi~~---~  265 (427)
T d2gsaa_         195 ENPGEIAGVILEPIVGN-SGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI-A---YGGVQEKFGV-TPDLTT---L  265 (427)
T ss_dssp             TSTTTEEEEEECSSBCS-SSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTT-B---TTCHHHHTTC-CCSEEE---E
T ss_pred             hCCCCeEEEEEcCCcCC-CCCccCCHHHHHHHHHHHHHhceeeeecccccccee-c---ccchHHhcCC-CHHHHh---h
Confidence            654444 4444222232 354 47888999999999999999999999988843 3   3344433322 233333   7


Q ss_pred             CccccccCCCcceeEEeecChhhHHHHHHHHhhh---hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435          252 AKNMGLYGERVGALSIVCKTEDVASRVESQLKLV---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM  328 (407)
Q Consensus       252 sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  328 (407)
                      +|.++ .|+.+|.+  ++.     +++.+.+...   ....+++.+++++.++.+.|+-..        -+...++++++
T Consensus       266 gK~lg-gG~p~~a~--~~~-----~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~--------~~~l~~~~~~~  329 (427)
T d2gsaa_         266 GKIIG-GGLPVGAY--GGK-----REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLR--------QPGTYEYLDQI  329 (427)
T ss_dssp             CGGGG-TTSCCEEE--EEC-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT--------STTHHHHHHHH
T ss_pred             hhccC-CCcceeee--eeh-----HHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhh--------hhhHHhhhhHH
Confidence            89888 68988888  565     4454444321   122345778888888887765221        01233445555


Q ss_pred             HHHHHHHHHhc----CCCCCcccccCCceeEEec--C-----------CCHH---HHHHhHhhccEEEcCCC--e--EEe
Q 015435          329 RQQLFDALSAR----GTPGDWSHIIKQIGMFTFT--G-----------LNSE---QVAFMTKEYHIYMTSDG--R--ISM  384 (407)
Q Consensus       329 ~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~--~-----------~~~~---~~~~~l~~~gi~~~~gg--R--is~  384 (407)
                      .+++.+.|+++    +.+  ..+ ...++++.+.  .           .+.+   .+...+.++||.+.|++  +  +++
T Consensus       330 g~~l~~~L~~l~~~~~~~--~~v-~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~~~~~~~l  406 (427)
T d2gsaa_         330 TKRLSDGLLAIAQETGHA--ACG-GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSL  406 (427)
T ss_dssp             HHHHHHHHHHHHHHTTCC--CEE-EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCEECCT
T ss_pred             HHHHHHHHHHHHhhcCCC--cEE-cccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCCcceeCCC
Confidence            55555555433    321  222 2223343221  1           1222   23333445899999987  3  344


Q ss_pred             cCCCCCChhHHHHHHHHHHHhh
Q 015435          385 AGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       385 ~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      . ++++||++++++++++++++
T Consensus       407 ~-~Te~dId~~l~al~~al~~L  427 (427)
T d2gsaa_         407 A-HTEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             T-CCHHHHHHHHHHHHHHHTCC
T ss_pred             C-CCHHHHHHHHHHHHHHHHhC
Confidence            4 48999999999999998764

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.82  E-value=2.7e-18  Score=161.46  Aligned_cols=317  Identities=16%  Similarity=0.129  Sum_probs=208.9

Q ss_pred             cccchhHHHHHHHHhccccccccCCCC------CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHH-
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPI------VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFL-  120 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~------~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~-  120 (407)
                      |.|..+++++.+.+.......++....      .-+++.|+.+++++ +..    .++.+++  ++++++++.++.... 
T Consensus        33 ~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~ll-ga~----~~~~i~~--~~~tt~~~n~~~~~~~  105 (408)
T d1t3ia_          33 QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI-NAR----SPREIVY--TRNATEAINLVAYSWG  105 (408)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT-TCS----CGGGEEE--ESSHHHHHHHHHHHTH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh-CCC----CcccEEe--ecchHHHHHHHHhhcc
Confidence            556677777666665111111111111      12557888899988 432    1367888  999999998875332 


Q ss_pred             -HhhcCCCeEEecCCCCCChHHHH----hhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCC
Q 015435          121 -ARHYHQLTIYIPQPTWGNHPKVF----TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDP  195 (407)
Q Consensus       121 -~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~  195 (407)
                       ..+.+||+|++.+-.|+.....+    +..|..++.+|.  +.....+.+.+++.+.  ++++++.+ +..+|-||+..
T Consensus       106 ~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~--~~~~~~~~~~l~~~~~--~~t~lv~i-~~~~~~tG~~~  180 (408)
T d1t3ia_         106 MNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL--DEQESFDLEHFKTLLS--EKTKLVTV-VHISNTLGCVN  180 (408)
T ss_dssp             HHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB--CTTSSBCHHHHHHHCC--TTEEEEEE-ESBCTTTCBBC
T ss_pred             ccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeec--cccccccHHHhhhccC--CCceEEEE-ecccccccccC
Confidence             23458999999998888766554    356999999988  4456789999999887  67777777 78899999987


Q ss_pred             CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH
Q 015435          196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA  275 (407)
Q Consensus       196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~  275 (407)
                      +   +++|.++|+++|+++++|.+.+ ++..+.  +   +.    ..+..+++.|..|.+|.+|  +|++  ..+     
T Consensus       181 p---~~~i~~~~~~~g~~~ivDa~q~-~g~~~i--d---~~----~~~~D~~~~s~hK~~gp~G--~g~l--~v~-----  238 (408)
T d1t3ia_         181 P---AEEIAQLAHQAGAKVLVDACQS-APHYPL--D---VQ----LIDCDWLVASGHKMCAPTG--IGFL--YGK-----  238 (408)
T ss_dssp             C---HHHHHHHHHHTTCEEEEECTTT-TTTSCC--C---HH----HHTCSEEEEEGGGTTSCTT--CEEE--EEC-----
T ss_pred             c---HHHHhhhhhccCceeeecccee-cccccc--c---cc----ccCCceEEeccccccCCCC--cccc--ccc-----
Confidence            7   6677788999999999999854 333222  1   11    1234588899999876555  5777  455     


Q ss_pred             HHHHHHHhhhh---------------------hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435          276 SRVESQLKLVI---------------------RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD  334 (407)
Q Consensus       276 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (407)
                      +.+........                     +....+++..++.++..+++-..     ....++.+++..+..+++.+
T Consensus       239 ~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~  313 (408)
T d1t3ia_         239 EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT-----DLGMENIHNYEVELTHYLWQ  313 (408)
T ss_dssp             HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHH-----HcCHHHHHHHHHHHHhHHhh
Confidence            33333221110                     11123445555555555543111     01356677888888899999


Q ss_pred             HHHhcCCCCCcccc------cCCceeEE--ecCCCHHHHHHhHhhccEEEcCC--------------C--eEEecC-CCC
Q 015435          335 ALSARGTPGDWSHI------IKQIGMFT--FTGLNSEQVAFMTKEYHIYMTSD--------------G--RISMAG-LSS  389 (407)
Q Consensus       335 ~l~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~l~~~gi~~~~g--------------g--Ris~~~-~~~  389 (407)
                      .+...+.   ....      ...++...  +.+.+.+.+...|+++||.++.|              |  |||++. -++
T Consensus       314 ~~~~~~~---~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~  390 (408)
T d1t3ia_         314 GLGQIPQ---LRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTK  390 (408)
T ss_dssp             HHHTCTT---EEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCH
T ss_pred             hhccCcc---ccccCCCccccCcceEEEEEeCCCCHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCH
Confidence            8887753   3222      12344433  45778888888888899998753              2  999875 367


Q ss_pred             CChhHHHHHHHHHHHhh
Q 015435          390 KTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~~  406 (407)
                      +|++++++.|+++++-+
T Consensus       391 ~did~li~~L~~~~~~f  407 (408)
T d1t3ia_         391 EEIDLFLQSLQATIRFF  407 (408)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998754

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=2.6e-19  Score=163.81  Aligned_cols=329  Identities=16%  Similarity=0.051  Sum_probs=197.0

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT  110 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t  110 (407)
                      +..+||++-.    .+ +..+++++++.++.   ..+...|.+.....++|+.+++++ +.      +..+++  |+|||
T Consensus         2 ~~~~~f~s~n----~~-g~~P~v~~A~~~a~---~~~~~~~~~~~~~~~l~~~la~~~-g~------~~~v~f--~~sGt   64 (345)
T d1v72a1           2 PPALGFSSDN----IA-GASPEVAQALVKHS---SGQAGPYGTDELTAQVKRKFCEIF-ER------DVEVFL--VPTGT   64 (345)
T ss_dssp             CCCCBCSCGG----GC-CCCHHHHHHHHHTT---SSCCCSTTCSHHHHHHHHHHHHHH-TS------CCEEEE--ESCHH
T ss_pred             CCCcCcCCCC----CC-CCCHHHHHHHHHHh---ccCccccCCCHHHHHHHHHHHHHH-CC------CcEEEE--CCchH
Confidence            4567777533    23 33445555554433   344566777778899999999998 54      257889  99999


Q ss_pred             cHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC----CCCcEEEE
Q 015435          111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA----PSGAIVLL  183 (407)
Q Consensus       111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~----~~~~~v~i  183 (407)
                      +|+..++  ...+..++.+++....+..+..   .....+..+..++.  ......+++.+++.+...    .....+++
T Consensus        65 ~An~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  140 (345)
T d1v72a1          65 AANALCL--SAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVD--GPAAKLDIVRLRERTREKVGDVHTTQPACV  140 (345)
T ss_dssp             HHHHHHH--HTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECC--CGGGCCCHHHHHHHTTSSTTCTTSCEEEEE
T ss_pred             HHHHHHH--HHHHhcCCccccccccceeeechhhHHHhcCcccccccc--cccccccHHHhhhhhcccccccccccceee
Confidence            9999984  4446678887777655433322   33345555555543  445678999999988643    12344555


Q ss_pred             ecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435          184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG  263 (407)
Q Consensus       184 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  263 (407)
                      .+++.|++|...+.+++++++++|++||+++++|+++.......   +..................+..|..+   ...+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  214 (345)
T d1v72a1         141 SITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVS---LGCSPAEMTWKAGVDALSFGATKNGV---LAAE  214 (345)
T ss_dssp             EEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHH---HTCCTTTTTGGGTCCEEEECCGGGTC---SSCE
T ss_pred             eeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccc---cccCHHHhhccccccccccCcccccc---cccc
Confidence            57788999999999999999999999999999999976443221   00000000111122333334333322   1223


Q ss_pred             eeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015435          264 ALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG  343 (407)
Q Consensus       264 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  343 (407)
                      ..  .............  .................++...+.+..        ..+...+..++..++.+.+.+.+.  
T Consensus       215 ~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~aa~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~g--  280 (345)
T d1v72a1         215 AI--VLFNTSLATEMSY--RRKRAGHLSSKMRFLSAQIDAYLTDDL--------WLRNARKANAAAQRLAQGLEGLGG--  280 (345)
T ss_dssp             EE--EESSGGGHHHHHH--HHHHTTCCCSSTHHHHHHHHHHTSTTH--------HHHHHHHHHHHHHHHHHHHTTCTT--
T ss_pred             cc--ccchhhhhhhccc--cccccccccchhhHHhhhhHHHHHHhh--------hhhhccchhhHHHHHHHHHHhcCC--
Confidence            33  2333332222221  111111111222222223333333321        234445556677778888888764  


Q ss_pred             CcccccCCceeEEecCCCHHHHHHhHhhccEEEcCC--C----eEEecC-CCCCChhHHHHHHHHH
Q 015435          344 DWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD--G----RISMAG-LSSKTVPHLTDAIHAA  402 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g--g----Ris~~~-~~~e~i~~~~~~l~~~  402 (407)
                       +.+..|..+.++++.+..+.+..+++ +|+.+.++  +    ||+++. .|+|||+++++.|+++
T Consensus       281 -~~~~~p~~~niv~~~~~~~~~~~L~~-~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         281 -VEVLGGTEANILFCRLDSAMIDALLK-AGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             -EEEESCCCSSEEEEEECHHHHHHHHH-TTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             -cEeccCCCccEEEEEcCHHHHHHHHH-cCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence             66666666677888888777766665 68877543  2    888764 4789999999999864

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=1e-18  Score=162.30  Aligned_cols=333  Identities=15%  Similarity=0.110  Sum_probs=211.3

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ..+++++||+..|....+.| ...+++++++.+++.  ......+  ... .+.+..+++.+......  ..+.+.+  +
T Consensus        33 d~dG~~ylD~~~g~~~~~lG-h~hp~v~~a~~~~~~--~~~~~~~--~~~-~~~~~~la~~l~~~~~~--~~~~v~f--~  102 (387)
T d1vefa1          33 DAEGNEYIDCVGGYGVANLG-HGNPEVVEAVKRQAE--TLMAMPQ--TLP-TPMRGEFYRTLTAILPP--ELNRVFP--V  102 (387)
T ss_dssp             ETTSCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHH--HCCCCCT--TSC-CHHHHHHHHHHHHTSCT--TEEEEEE--E
T ss_pred             ECCCCEEEEcchhHHhhhhc-CCcHHHHHHHHHHHH--hhccccc--ccC-CchHHHHHHHhhhhccc--cceeecc--c
Confidence            35679999999886655666 567788888877776  2111111  111 23444444444222111  1257899  9


Q ss_pred             CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc-------------eeeEEEeecCCCCCcChhhHHHHHH
Q 015435          107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL-------------SVKTYRYYDPATRGLNFQGLLEDLR  173 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~~l~~~i~  173 (407)
                      ++|++|++.++++.+.......|+....+|++........+.             .+..+|.       -|.+.+++.+.
T Consensus       103 ~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~  175 (387)
T d1vefa1         103 NSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVD  175 (387)
T ss_dssp             SSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCC
T ss_pred             cCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcC
Confidence            999999999998887777778899999888776543332211             2222322       26788888876


Q ss_pred             cCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecC
Q 015435          174 AAPSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA  252 (407)
Q Consensus       174 ~~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  252 (407)
                        .+..++++-+ -....|.. .+++.+++|.++|++||+++|+||+..+|+..+.   .+....+. -..++++   ++
T Consensus       176 --~~iAavi~EP-i~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~---~~~~~~~~-v~PDi~~---~g  245 (387)
T d1vefa1         176 --EETAAVILEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK---RFAFEHFG-IVPDILT---LA  245 (387)
T ss_dssp             --TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHHT-CCCSEEE---EC
T ss_pred             --CCeEEEEEEC-CCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCC---CcccccCC-cCCceee---ec
Confidence              4455655532 23334654 8899999999999999999999999999977652   22333332 2233333   78


Q ss_pred             ccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 015435          253 KNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQL  332 (407)
Q Consensus       253 K~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (407)
                      |.++ .|..++.+  +..     +++...+.......+.+.+++++.++.+.|+-..        -....++++++.+++
T Consensus       246 K~l~-gG~~~~~~--~~~-----~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~--------~~~~~~~v~~~g~~l  309 (387)
T d1vefa1         246 KALG-GGVPLGVA--VMR-----EEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE--------RTRLWERAAELGPWF  309 (387)
T ss_dssp             GGGG-TTSSCEEE--EEE-----HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH--------HHTTHHHHHHHHHHH
T ss_pred             ccCC-CCcccccc--ccc-----eeeeeccccCCccccCCCCcchhhhcccchhhcc--------cccccchHhhhhHHH
Confidence            9998 78888887  455     4455544444444566788999998888776331        124456677788888


Q ss_pred             HHHHHhcCCCCCcccccCCceeEEe--cCCCHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHHHHH
Q 015435          333 FDALSARGTPGDWSHIIKQIGMFTF--TGLNSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       333 ~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      .+.|+++..+. +..+...|.++.+  ..-....+..++.++|+.+.+.|    |++.+- +++++++.++++|+++|
T Consensus       310 ~~~L~~l~~~~-v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         310 MEKLRAIPSPK-IREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             HHHHHTSCCTT-EEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCc-eEEEeecceEEEEEEeCCchHHHHHHHHHCCCeEEecCCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence            99998775321 2222223333321  12234455566566787766654    665332 58899999999999886

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.81  E-value=1.6e-18  Score=164.49  Aligned_cols=303  Identities=13%  Similarity=0.056  Sum_probs=192.8

Q ss_pred             cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCce
Q 015435           70 EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLS  149 (407)
Q Consensus        70 ~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~  149 (407)
                      .|.......+|.+.+++++ +.       +++++  |++||.|+.+++  ...+++||.|+.... |......+...|..
T Consensus        70 ~Y~~dpt~~~lE~~~a~l~-G~-------e~al~--~~SGt~An~~a~--~~l~~~Gd~Vi~~~~-f~~~~~~i~~~g~~  136 (456)
T d1c7ga_          70 AYAGSENFYHLEKTVKELF-GF-------KHIVP--THQGRGAENLLS--QLAIKPGQYVAGNMY-FTTTRFHQEKNGAT  136 (456)
T ss_dssp             CSSSCHHHHHHHHHHHHHH-CC-------SEEEE--ESSHHHHHHHHH--HHHCCTTEEEEESSC-CHHHHHHHHHTTEE
T ss_pred             hccCCchHHHHHHHHHHHh-CC-------CeEEE--CCCHHHHHHHHH--HHhcCCCCeEecCcc-hHHHHHHHHHcCce
Confidence            4888888999999999988 75       78888  999999999985  445889999887654 45555667788888


Q ss_pred             eeEEEee--------cCCCCCcChhhHHHHHHcCC-C-CcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeecc
Q 015435          150 VKTYRYY--------DPATRGLNFQGLLEDLRAAP-S-GAIVLLHACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFDS  218 (407)
Q Consensus       150 ~~~v~~~--------~~~~~~~d~~~l~~~i~~~~-~-~~~v~i~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D~  218 (407)
                      .+.+...        ++..+.+|++++++.+++.. . .+++++ .+++|+. |.+++.+++++|.++|++||+.+++|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~-e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~  215 (456)
T d1c7ga_         137 FVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICL-AVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA  215 (456)
T ss_dssp             EEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEE-ESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             eeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEe-eecccccccceecHHHHHHHHHHHHHcCCEEEEEc
Confidence            8766542        12345789999999997432 2 234455 7888885 778999999999999999999999999


Q ss_pred             ccccc----------cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhc
Q 015435          219 AYQGF----------ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRP  288 (407)
Q Consensus       219 ~y~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~  288 (407)
                      +....          .+.+  .....+..-. .....++..|++|.++.++  -|++  +++++++.++++.........
T Consensus       216 a~~~~~a~~~~~~~~~~~~--~~i~~i~~~~-~~~ad~~s~s~~K~~~~~~--GG~i--~~~~~~l~~~~r~~~~~~~g~  288 (456)
T d1c7ga_         216 TRCVENAYFIKEQEAGYEN--VSIKDIVHEM-FSYADGCTMSGKKDCLVNI--GGFL--CMNDEEMFSAAKELVVVYEGM  288 (456)
T ss_dssp             TTHHHHHHHHHHHSTTCTT--SCHHHHHHHH-HTTCSEEEEETTTTTCCSS--CEEE--EESCHHHHHHHHHHHHHHTCC
T ss_pred             chhhcchhhhcccccccCC--CChhhhcccc-ccccccEEEeccccccccc--eeEE--EcCCHHHHHHHHHhccccCCC
Confidence            86421          1111  1111111101 1123366679999987442  2666  678777766655433222221


Q ss_pred             ccC-CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC-------C
Q 015435          289 MYS-SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG-------L  360 (407)
Q Consensus       289 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~  360 (407)
                      ... ..+...+.++...+....        .....++..++.++|.+.|.+.+    +.+..|.++...+++       +
T Consensus       289 ~~~g~~~~~~~~a~a~~l~e~~--------~~~~l~~r~~~~~~L~e~L~~~g----~~vv~p~g~~~v~vda~~~~~~i  356 (456)
T d1c7ga_         289 PSYGGLAGRDMEAMAIGLREAM--------QYEYIEHRVKQVRYLGDKLREAG----VPIVEPTGGHAVFLDARRFCPHL  356 (456)
T ss_dssp             TTTTTCCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHHHHTT----CCBCSSCCSSEEEEEHHHHCTTS
T ss_pred             cccchhhHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHHHHHHhcc----CCcccCCCCcceeEechhhccCC
Confidence            111 222222222222221110        01122333456688999999988    555556566554431       1


Q ss_pred             -----CH-HHHHHhHhhccEEEcCCC---------------------eEEecC--CCCCChhHHHHHHHHHHHh
Q 015435          361 -----NS-EQVAFMTKEYHIYMTSDG---------------------RISMAG--LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       361 -----~~-~~~~~~l~~~gi~~~~gg---------------------Ris~~~--~~~e~i~~~~~~l~~~l~~  405 (407)
                           .. ..+..++.+.||...+.|                     |+++..  .|.++++.+++.|+++.++
T Consensus       357 ~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~  430 (456)
T d1c7ga_         357 TQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred             CcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhh
Confidence                 12 345566667888654311                     787763  3778899999999998853

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.80  E-value=4.1e-17  Score=149.45  Aligned_cols=298  Identities=13%  Similarity=0.122  Sum_probs=203.7

Q ss_pred             chhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCe
Q 015435           51 LNVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT  128 (407)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~  128 (407)
                      .+..+....... .......|+.  .+....|.+.++++. +.       +..++  ++||+.|+..+  ++..+.+||.
T Consensus        38 ~~~~~~~~~~~~-~~~~~~~Y~R~~nPT~~~LE~~la~LE-gg-------~~a~~--~sSGmaAi~~~--l~~ll~~Gd~  104 (397)
T d1y4ia1          38 FDSAEQGAARFA-LEESGYIYTRLGNPTTDALEKKLAVLE-RG-------EAGLA--TASGISAITTT--LLTLCQQGDH  104 (397)
T ss_dssp             CSSHHHHHHHHH-SCSSSSCCCTTSCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHH--HHHHCCTTCE
T ss_pred             eCCHHHHHHhhc-CCcCCceeeCCCCHHHHHHHHHHHHHh-CC-------cccee--ehHHHHHHHHH--HhhccCCCCe
Confidence            334455544443 2222344655  234666777788876 32       56777  99999999888  5677899999


Q ss_pred             EEecCCCCCChHHHHh----hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHH
Q 015435          129 IYIPQPTWGNHPKVFT----LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIR  204 (407)
Q Consensus       129 Vi~~~p~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~  204 (407)
                      |++++..|.+....+.    ..|+++..++.       .|++.+++++.  +++++|++ -+|.|||..+.   |+++|+
T Consensus       105 vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~-------~d~~~~~~~i~--~~Tklv~~-Esp~NP~l~v~---Di~~i~  171 (397)
T d1y4ia1         105 IVSASAIYGCTHAFLSHSMPKFGINVRFVDA-------GKPEEIRAAMR--PETKVVYI-ETPANPTLSLV---DIETVA  171 (397)
T ss_dssp             EEEESSSCHHHHHHHHTHHHHTTCEEEEECT-------TSHHHHHHHCC--TTEEEEEE-ESSCTTTCCCC---CHHHHH
T ss_pred             eeeecccccccchhhhcccCCCceEeeccCC-------CCHHHHHHhcC--CCCcEEEe-cCCcccceeec---ccHHHH
Confidence            9999999987766553    77999988843       37899999987  78899888 88999999976   588888


Q ss_pred             HHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhh
Q 015435          205 QLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL  284 (407)
Q Consensus       205 ~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~  284 (407)
                      ++|+++|+++++|..++.-..-.      +     -.....|++.|.+|.++..+.-+|.+  ++.+++...+.  ++..
T Consensus       172 ~iA~~~gi~~vvDnT~atP~~~~------P-----l~~GaDivihS~TKyi~Ghsdvl~G~--v~~~~~~~~~~--r~~~  236 (397)
T d1y4ia1         172 GIAHQQGALLVVDNTFMSPYCQQ------P-----LQLGADIVVHSVTKYINGHGDVIGGI--IVGKQEFIDQA--RFVG  236 (397)
T ss_dssp             HHHHHTTCEEEEECTTTCTTTCC------G-----GGGTCSEEEEETTTTTTCSSCCCCEE--EEECHHHHHHH--HHTH
T ss_pred             HHhhcCCceEEecCcccCcccCc------c-----hhcCCCEEEEehhhhcCCCcceeeec--cCCCHHHHHHH--HHHH
Confidence            89999999999999986433321      1     11234699999999998888878777  45555433322  1222


Q ss_pred             hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-c----------------
Q 015435          285 VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-H----------------  347 (407)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~----------------  347 (407)
                      .+.......++..+..+..-|+..          ..+.++..++...+.+.|++.+.   ++ +                
T Consensus       237 ~~~~~G~~l~p~~a~l~~rgl~TL----------~lRm~~~~~nA~~lA~~L~~hp~---V~~V~yPgl~s~p~h~~~~~  303 (397)
T d1y4ia1         237 LKDITGGCMSPFNAWLTLRGVKTL----------GIRMERHCENALKIARFLEGHPS---ITRVYYPGLSSHPQYELGQR  303 (397)
T ss_dssp             HHHTTCCCCCHHHHHHHHHHHTTH----------HHHHHHHHHHHHHHHHHHHTCTT---EEEEECTTSTTCTTHHHHHH
T ss_pred             HHhCcCCcCCHHHHHHHHcCcCcH----------HHHHHHHHHHHHHHHHHHHhCCC---cCeEeCCCCCCCcccccccc
Confidence            333334467777777777776654          34456677888899999987652   21 1                


Q ss_pred             -ccCCceeEEec-CCCHHHHHHhHhhccEEEc---CC-------------------------C------eEEecCCCCCC
Q 015435          348 -IIKQIGMFTFT-GLNSEQVAFMTKEYHIYMT---SD-------------------------G------RISMAGLSSKT  391 (407)
Q Consensus       348 -~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~---~g-------------------------g------Ris~~~~~~e~  391 (407)
                       ....||++.|. .-+.+.+.+++++..++-.   =|                         |      |||++-   |+
T Consensus       304 ~~~g~gg~~sf~~~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl---Ed  380 (397)
T d1y4ia1         304 QMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL---ED  380 (397)
T ss_dssp             HCSSCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS---SC
T ss_pred             ccCCCCeEEEEEecCCHHHHHHHHHcCCccceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEecc---CC
Confidence             11247777764 3334556666665444321   11                         1      888773   89


Q ss_pred             hhHHHHHHHHHHHh
Q 015435          392 VPHLTDAIHAAVTR  405 (407)
Q Consensus       392 i~~~~~~l~~~l~~  405 (407)
                      .+.+++-|.++|+.
T Consensus       381 ~~DLi~Dl~~AL~~  394 (397)
T d1y4ia1         381 PEDIINDLEHAIRK  394 (397)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999874

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.3e-18  Score=162.67  Aligned_cols=335  Identities=11%  Similarity=0.072  Sum_probs=210.2

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++++||+..|....+.| ..++++++++.+++. .......+....-...+.+.+++.. +.       +.+.+  +
T Consensus        37 D~dG~~ylD~~~g~~~~~lG-h~~p~i~~Av~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~v~~--~  104 (404)
T d2byla1          37 DVEGRKYFDFLSSISAVNQG-HCHPKIVNALKSQVD-KLTLTSRAFYNNVLGEYEEYITKLF-NY-------HKVLP--M  104 (404)
T ss_dssp             ETTCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHT-TCCCCCTTEEESSHHHHHHHHHHHH-TC-------SEEEE--E
T ss_pred             ECCCCEEEEecCCHHHHhhc-CCCHHHHHHHHHHHh-hCCCcccccccchHHHHHHhhhhcc-cc-------ccccc--c
Confidence            34678999999987655667 667788888888886 2211112212233445556666654 43       68899  9


Q ss_pred             CCcccHHHHHHHHHHhhc--------CCCeEEecCCCCCChHHHHhhcCc-------------eeeEEEeecCCCCCcCh
Q 015435          107 LSGTGSLRVGAEFLARHY--------HQLTIYIPQPTWGNHPKVFTLAGL-------------SVKTYRYYDPATRGLNF  165 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~--------~gd~Vi~~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~  165 (407)
                      ++|++|++.++++.+...        ....++...-+|............             .+..+|.       .|+
T Consensus       105 ~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~  177 (404)
T d2byla1         105 NTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDL  177 (404)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCH
T ss_pred             cCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCH
Confidence            999999999988876432        224677777666644332221111             1222222       378


Q ss_pred             hhHHHHHHcCCCCcEEEEecCCCCCCC-CCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          166 QGLLEDLRAAPSGAIVLLHACAHNPTG-VDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      +++++.+.+ ++..++++-+ -....| ..++++.+++|.++|++||+++|+||+..+|+..+.   .+....+.- ..+
T Consensus       178 ~~l~~~l~~-~~iAaviiEP-i~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~---~~a~~~~gv-~PD  251 (404)
T d2byla1         178 PALERALQD-PNVAAFMVEP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAVDYENV-RPD  251 (404)
T ss_dssp             HHHHHHHTS-TTEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGGTC-CCS
T ss_pred             HHHHHhcCC-CCeEEEEECC-ccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc---cchhhhcCC-CCC
Confidence            889998862 2344555532 233345 457889999999999999999999999999877652   232222221 123


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      ++   +++|.++..++.+|.+  +++     +++.+.+.......+++.+++++.++.+.|+...        -+...++
T Consensus       252 i~---~~gK~l~gG~~p~~av--~~~-----~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~--------~~~l~~~  313 (404)
T d2byla1         252 IV---LLGKALSGGLYPVSAV--LCD-----DDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLE--------EENLAEN  313 (404)
T ss_dssp             EE---EECGGGGTTSSCCEEE--EEC-----HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH--------HTTHHHH
T ss_pred             EE---EECchhhCCCccceee--eec-----hhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHH--------hcCchhh
Confidence            33   5899999434899998  566     5565555554444566788999998888876332        1245566


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccCCceeEEe--c---CCCHHHHHHhHhhccEEEcCC-C---eEEec-CCCCCChhH
Q 015435          325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTF--T---GLNSEQVAFMTKEYHIYMTSD-G---RISMA-GLSSKTVPH  394 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~l~~~gi~~~~g-g---Ris~~-~~~~e~i~~  394 (407)
                      .+++.+++.+.|+++..+. +..+...|.++.+  .   +.....+...+.++|+.+.+. +   |++.. .++++++++
T Consensus       314 ~~~~g~~l~~~l~~l~~~~-i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~it~~~id~  392 (404)
T d2byla1         314 ADKLGIILRNELMKLPSDV-VTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRE  392 (404)
T ss_dssp             HHHHHHHHHHHHHTSCTTT-EEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEEETTEEEECCCTTCCHHHHHH
T ss_pred             hhHhhHHHHHHHHhhcccc-ceeeeecccEEEEEEecCCchhHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHH
Confidence            6777888888888775321 2222333433332  1   123333444445589999874 3   55432 258899999


Q ss_pred             HHHHHHHHHHh
Q 015435          395 LTDAIHAAVTR  405 (407)
Q Consensus       395 ~~~~l~~~l~~  405 (407)
                      ++++|++++++
T Consensus       393 ~~~~l~~al~~  403 (404)
T d2byla1         393 SIEIINKTILS  403 (404)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999999875

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=4.8e-19  Score=167.12  Aligned_cols=345  Identities=12%  Similarity=0.102  Sum_probs=202.7

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCC-CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL-PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++++++++.+++. .......+. ......++.+.+.+.+.+ ..    .+.+++  
T Consensus        36 D~dG~~ylD~~~g~~~~~lG-h~~p~i~~ai~~q~~-~~~~~~~~~~~~~~~~~la~~l~~~~p~-~~----~~~v~f--  106 (425)
T d1sffa_          36 DVEGREYLDFAGGIAVLNTG-HLHPKVVAAVEAQLK-KLSHTCFQVLAYEPYLELCEIMNQKVPG-DF----AKKTLL--  106 (425)
T ss_dssp             ETTCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHTT-TCSCCCTTTEECHHHHHHHHHHHHHSSC-SS----CEEEEE--
T ss_pred             eCCCCEEEEcCcCHHhhccc-CCcHHHHHHHHHHHh-hcCCcccccccCcHHHHHHHHHHhhhhh-cc----cceeee--
Confidence            34679999999997656677 667788888888775 111111110 111234455556555521 11    257888  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-Cc-------------eeeEEEeecCCCCCc--C-hhhH
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-GL-------------SVKTYRYYDPATRGL--N-FQGL  168 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~~~~~~--d-~~~l  168 (407)
                      ++||++|.+.++++.+......+|+...-+|++........ |.             .....+.........  . .+..
T Consensus       107 ~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (425)
T d1sffa_         107 VTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASI  186 (425)
T ss_dssp             ESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHH
T ss_pred             eccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHH
Confidence            99999999999988887777778999999888876644422 11             111111100000001  0 1111


Q ss_pred             HHHHH--cC-CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435          169 LEDLR--AA-PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE  244 (407)
Q Consensus       169 ~~~i~--~~-~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~  244 (407)
                      ++...  .. .+..++++-+- +...|. .++++.+++|.++|++||+++|+||+..++...+.   .+....+.- ..+
T Consensus       187 ~~~~~~~~~~~~vaavi~EPi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~---~~a~~~~gv-~PD  261 (425)
T d1sffa_         187 HRIFKNDAAPEDIAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAMEQMGV-APD  261 (425)
T ss_dssp             HHHHHHTCCGGGEEEEEECSB-CTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGTTS-CCS
T ss_pred             HHHHHhcccccceEEEEecCc-cCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch---hhHHHhcCC-Ccc
Confidence            11111  11 22344555332 323454 57899999999999999999999999998876542   222222211 223


Q ss_pred             EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      ++   +++|.++ .|+++|.+  +++     +++.+.+.......+++.+++++.++.+.|+-..        -+...++
T Consensus       262 i~---~~gK~l~-gG~P~~av--~~~-----~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~--------~~~~~~~  322 (425)
T d1sffa_         262 LT---TFAKSIA-GGFPLAGV--TGR-----AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE--------QENLLQK  322 (425)
T ss_dssp             EE---EECGGGG-TSSCCEEE--EEE-----HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH--------HTTHHHH
T ss_pred             ce---ecccccC-CCcceEEE--EEc-----HHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHH--------Hhhhhhh
Confidence            33   3899998 68999999  566     5565555544444566888899999888876331        1122233


Q ss_pred             HHHHHHHHHHHHH----hcCCCCCcccccCCceeEEec---C----C-CHH---HHHHhHhhccEEEcCCC------eEE
Q 015435          325 IISMRQQLFDALS----ARGTPGDWSHIIKQIGMFTFT---G----L-NSE---QVAFMTKEYHIYMTSDG------RIS  383 (407)
Q Consensus       325 ~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~---~----~-~~~---~~~~~l~~~gi~~~~gg------Ris  383 (407)
                      ..+..+++.+.++    +.+.   ...+...|.++.+.   +    . +.+   .+...+.++|+.+.++|      |++
T Consensus       323 ~~~~g~~l~~~l~~~~~~~~~---v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~  399 (425)
T d1sffa_         323 ANDLGQKLKDGLLAIAEKHPE---IGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRIL  399 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTT---EEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEEC
T ss_pred             hhhhhhhhhhhhhhhHhhCCc---eEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEE
Confidence            3344444444443    3332   23333445444331   0    1 222   23333445899988764      554


Q ss_pred             ec-CCCCCChhHHHHHHHHHHHhhC
Q 015435          384 MA-GLSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       384 ~~-~~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      .+ .+++++++.++++++++++++.
T Consensus       400 PpL~it~~eid~~l~~l~~al~eik  424 (425)
T d1sffa_         400 VPLTIEDAQIRQGLEIISQCFDEAK  424 (425)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            33 2588999999999999998763

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=3e-17  Score=150.03  Aligned_cols=276  Identities=15%  Similarity=0.140  Sum_probs=192.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCceee
Q 015435           76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGLSVK  151 (407)
Q Consensus        76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~~~~  151 (407)
                      ....|.++++++. +.       +..++  ++||+.|+..+   +..+.+||.|++..+.|.+....++    ..|+.+.
T Consensus        50 t~~~le~~la~LE-~~-------~~a~~--fsSGMaAisal---l~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~  116 (380)
T d1ibja_          50 TRDALESLLAKLD-KA-------DRAFC--FTSGMAALSAV---THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVK  116 (380)
T ss_dssp             HHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEE
T ss_pred             HHHHHHHHHHHHc-CC-------ceEEe--hhhHHHHHHHH---HHhhCCCCEEEEEecccccccchhhhhhcccccccc
Confidence            4667788888877 32       56777  99999998644   6778899999999999988877665    5687777


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD  231 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~  231 (407)
                      .++.       .+.+++++++.  ++++++++ -+|.|||..+.+   +++|+++|+++|+++|+|+.++....-.    
T Consensus       117 ~~d~-------~~~~~~~~ai~--~~t~li~~-EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~~----  179 (380)
T d1ibja_         117 RVNT-------TKLDEVAAAIG--PQTKLVWL-ESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLSR----  179 (380)
T ss_dssp             EECT-------TSHHHHHHHCC--SSEEEEEE-CSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTCC----
T ss_pred             ccCc-------chHHHHHHHhc--cCccEEEe-cccccccccccc---HHHHHHHHHHcCCeEEeecccccccccc----
Confidence            7643       47889999887  67888888 899999999775   7888888999999999999986544321    


Q ss_pred             hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhH
Q 015435          232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMY  311 (407)
Q Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  311 (407)
                        +     -.....+++.|.+|.++..|--+|..+ ++++++.    ...+...........++..+..+..-++..   
T Consensus       180 --P-----l~~GaDiVvhS~TKyi~GhsDv~~G~v-~~~~~~~----~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl---  244 (380)
T d1ibja_         180 --P-----LELGADIVMHSATKFIAGHSDVMAGVL-AVKGEKL----AKEVYFLQNSEGSGLAPFDCWLCLRGIKTM---  244 (380)
T ss_dssp             --G-----GGTTCSEEEEETTTTTTCSSCCCCEEE-EECSHHH----HHHHHHHHHHTTCBCCHHHHHHHHHHHTTH---
T ss_pred             --c-----cccCCCEEEecccceeccccCcccccc-ccchhhH----HHHHHhhccccCCcCCHHHHHHHHhcchhh---
Confidence              1     112457999999999987777666653 3454443    333444444444567777777777776654   


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---------------ccCCceeEEecCCCHHHHHHhHhhccEEE
Q 015435          312 KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH---------------IIKQIGMFTFTGLNSEQVAFMTKEYHIYM  376 (407)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  376 (407)
                             ..+.++..++...+.+.|++.+.-..+.+               ....++++.+.--+.+.+.++++...++-
T Consensus       245 -------~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~  317 (380)
T d1ibja_         245 -------ALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFS  317 (380)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSE
T ss_pred             -------hhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccccHHHHHHHHHHhCCcCe
Confidence                   45556777888889999987642000000               01245555554335666666665544322


Q ss_pred             -cC--C-------------------------C------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          377 -TS--D-------------------------G------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       377 -~~--g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                       .+  |                         |      |||++-   |+.+.+++.|+++|+.+
T Consensus       318 ~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl---E~~eDLi~Dl~qAl~~l  378 (380)
T d1ibja_         318 IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI---EDVDDLISDLDIAFKTF  378 (380)
T ss_dssp             ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS---SCHHHHHHHHHHHHHSC
T ss_pred             EeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEecc---CCHHHHHHHHHHHHHhc
Confidence             11  1                         1      888873   89999999999999875

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.79  E-value=3.6e-18  Score=154.90  Aligned_cols=315  Identities=13%  Similarity=0.050  Sum_probs=186.1

Q ss_pred             chhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEE
Q 015435           51 LNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIY  130 (407)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi  130 (407)
                      +.+++++.+..   .....+|++....+++|+.+++++ +.     ++++|++  |+|||+++.+++  .....+++.++
T Consensus        14 P~v~eAl~~~~---~~~~~~y~~~~~~~~lr~~ia~~~-g~-----~~~~v~~--tsggtean~~a~--~~~~~~~~~~~   80 (340)
T d1svva_          14 PKILDLMARDN---MTQHAGYGQDSHCAKAARLIGELL-ER-----PDADVHF--ISGGTQTNLIAC--SLALRPWEAVI   80 (340)
T ss_dssp             HHHHHHHHHHT---TCCCCSTTCSHHHHHHHHHHHHHH-TC-----TTSEEEE--ESCHHHHHHHHH--HHHCCTTEEEE
T ss_pred             HHHHHHHHHHh---hcCCCCCCCCHHHHHHHHHHHHHh-CC-----CcceEEE--cCCHHHHHHHHH--HHHhhhccccc
Confidence            34555554443   334567877788899999999999 53     2478999  999999999884  45577899999


Q ss_pred             ecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC----CCCcEEEEecCCCCCCCCCCCHHHHHHHHHH
Q 015435          131 IPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA----PSGAIVLLHACAHNPTGVDPTLEQWEQIRQL  206 (407)
Q Consensus       131 ~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~----~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~  206 (407)
                      +..+.+..+.......+.....+... ......+.+...+.....    ..+..+++ +...|++|.+...+++..+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  158 (340)
T d1svva_          81 ATQLGHISTHETGAIEATGHKVVTAP-CPDGKLRVADIESALHENRSEHMVIPKLVY-ISNTTEVGTQYTKQELEDISAS  158 (340)
T ss_dssp             EETTSHHHHSSTTHHHHTTCCEEEEC-CTTSCCCHHHHHHHHHHSCSTTSCEEEEEE-EESSCTTSCCCCHHHHHHHHHH
T ss_pred             cccccceeeeecccccccceeeeecc-cccccccchhHHHHhhhhhcccCCcceeee-ecccccccccccHHHhhhhhcc
Confidence            98887765544333333333333332 222334444444443321    12234444 4445567777889999999999


Q ss_pred             HHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh
Q 015435          207 MRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI  286 (407)
Q Consensus       207 ~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~  286 (407)
                      |+++|.++++|+++......... ..........  ...+...+..|..+  +.+.++.   ..............  ..
T Consensus       159 ~~~~g~~~~~d~a~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~--~~  228 (340)
T d1svva_         159 CKEHGLYLFLDGARLASALSSPV-NDLTLADIAR--LTDMFYIGATKAGG--MFGEALI---ILNDALKPNARHLI--KQ  228 (340)
T ss_dssp             HHHHTCEEEEECTTHHHHHTSTT-CCCCHHHHHH--HCSEEEEECTTTTC--SSCEEEE---ECSGGGCTTHHHHH--HH
T ss_pred             cccccceeeeeccceeeeecccc-cccccccccc--cceeeecCCccccc--ccccccc---ccchhhhhhhhhhc--cc
Confidence            99999999999998543322111 1111111111  12344444555443  3333444   23222212111111  11


Q ss_pred             hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHH
Q 015435          287 RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVA  366 (407)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (407)
                      .............++...++...        .....++...+++++.+.++..|    +.+..|..+.+++..++.+...
T Consensus       229 ~~~~~~~~~~~~aa~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~g----~~~~~p~~~~~v~~~~~~~~~~  296 (340)
T d1svva_         229 RGALMAKGWLLGIQFEVLMKDNL--------FFELGAHSNKMAAILKAGLEACG----IRLAWPSASNQLFPILENTMIA  296 (340)
T ss_dssp             TTCCCTTTHHHHHHHHHHTSTTH--------HHHHHHHHHHHHHHHHHHHHHTT----CCBSSCCSSSEECBEEEHHHHH
T ss_pred             ccCccchhhHHHHHHHHHhhhhH--------HHHHHHHHHHHHhhhHHHHhcCC----CeeecCCCceEEEEeCCHHHHH
Confidence            11212223333334444444332        34455677788888999999988    6766666666788888877777


Q ss_pred             HhHhh---ccEEEcCCC----eEEecC-CCCCChhHHHHHHHHH
Q 015435          367 FMTKE---YHIYMTSDG----RISMAG-LSSKTVPHLTDAIHAA  402 (407)
Q Consensus       367 ~~l~~---~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~~  402 (407)
                      +++++   .++...+.|    ||+++. .+++||++++++|+++
T Consensus       297 ~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         297 ELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             HHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            77765   344455555    887653 4889999999999863

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.79  E-value=6.9e-18  Score=157.01  Aligned_cols=301  Identities=15%  Similarity=0.126  Sum_probs=192.9

Q ss_pred             cchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hcCCCe
Q 015435           50 VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLT  128 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~  128 (407)
                      ..+.+.++.+.+.  .   ..|+.-....+|.+.+++++ +.       +++++  |+|||.|+.+++  .+. +.+||+
T Consensus        11 ~~~~~~~~~~~~~--~---~~~~~G~~v~~~E~~la~~~-g~-------~~ai~--~~sgt~Al~~al--~al~~~~gde   73 (376)
T d1mdoa_          11 GAEELAAVKTVLD--S---GWITTGPKNQELEAAFCRLT-GN-------QYAVA--VSSATAGMHIAL--MALGIGEGDE   73 (376)
T ss_dssp             CHHHHHHHHHHHH--H---TCCSSSHHHHHHHHHHHHHH-CC-------SEEEE--ESCHHHHHHHHH--HHTTCCTTCE
T ss_pred             CHHHHHHHHHHHh--c---CCCcCCHHHHHHHHHHHHHH-Cc-------CeEEE--eCCHHHHHHHHH--HHhCCCCCCE
Confidence            3455555555554  2   12333345789999999999 64       67888  999999999994  333 679999


Q ss_pred             EEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHH
Q 015435          129 IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMR  208 (407)
Q Consensus       129 Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~  208 (407)
                      |++++.+|.....++..+|.+++.+++ +++++.+|+++++++++  +++++|+++    +..|...   ++++|.++|+
T Consensus        74 Vi~~~~~~~~~~~ai~~~g~~pv~~d~-~~~~~~~d~~~l~~~i~--~~tkaIi~~----h~~G~~~---~~~~i~~i~~  143 (376)
T d1mdoa_          74 VITPSMTWVSTLNMIVLLGANPVMVDV-DRDTLMVTPEHIEAAIT--PQTKAIIPV----HYAGAPA---DLDAIYALGE  143 (376)
T ss_dssp             EEEESSSCHHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHCC--TTEEEECCB----CGGGCCC---CHHHHHHHHH
T ss_pred             EEEecccccccccchhccccceeeecc-cccccCCCHHHHHHhcC--CCCeEEEEe----CCCCCcc---chhHHHHHHH
Confidence            999999999999999999999999999 46678899999999998  667777663    3567644   5778888899


Q ss_pred             HcCceeeeccccccccC-CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhh
Q 015435          209 SKGLLPFFDSAYQGFAS-GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIR  287 (407)
Q Consensus       209 ~~~~~li~D~~y~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~  287 (407)
                      ++|+.||+|++++.... .+.         .....+..++.+..+|.++ +|- .|.+  ++.++++.+++.........
T Consensus       144 ~~~i~vIeD~a~a~g~~~~~~---------~~g~~g~~~~Sf~~~K~l~-~g~-GG~i--~t~~~~l~~~~~~~~~~g~~  210 (376)
T d1mdoa_         144 RYGIPVIEDAAHATGTSYKGR---------HIGARGTAIFSFHAIKNIT-CAE-GGIV--VTDNPQFADKLRSLKFHGLG  210 (376)
T ss_dssp             HHTCCBCEECTTCTTCEETTE---------ETTSSSEEEEECCTTSSSC-SSS-CEEE--EESCHHHHHHHHHHTBTTEE
T ss_pred             hcCceEEeccchhccCeeCCe---------ecccccCccccCCCcCCCC-CCC-CCEE--EEechhHHHHHHhhcccCCc
Confidence            99999999999754331 110         0111233444455578886 333 4666  78888877766553322210


Q ss_pred             c--------------------ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435          288 P--------------------MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH  347 (407)
Q Consensus       288 ~--------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  347 (407)
                      .                    .....+.+........|          +.+++..++.+++.+++.+.|++.+.   ...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL----------~~~~~~~~~r~~~~~~~~~~L~~~~~---~~~  277 (376)
T d1mdoa_         211 VDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL----------QKLDALNARRAAIAAQYHQAMADLPF---QPL  277 (376)
T ss_dssp             CC-----------CCEESSCCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHHHTSSC---EEC
T ss_pred             ccccccccccccccccchhcccccccchhhhhhhhhhh----------hhhhHHHHHHhhhhhhhhhhcccccc---ccc
Confidence            0                    00011222222222112          22445556667778888888887652   222


Q ss_pred             ccCC----ceeEEe---c-----CCCHHHHHHhHhhccEEEcCC----------------C----------e-EEec---
Q 015435          348 IIKQ----IGMFTF---T-----GLNSEQVAFMTKEYHIYMTSD----------------G----------R-ISMA---  385 (407)
Q Consensus       348 ~~~~----~~~~~~---~-----~~~~~~~~~~l~~~gi~~~~g----------------g----------R-is~~---  385 (407)
                      ....    ..++.+   +     +.+.+.+...|+++||.+...                +          | |++.   
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~  357 (376)
T d1mdoa_         278 SLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFP  357 (376)
T ss_dssp             CCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCT
T ss_pred             ccccccccccccccccccccccchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCC
Confidence            2111    111111   1     224556667777789987532                1          2 4543   


Q ss_pred             CCCCCChhHHHHHHHHHH
Q 015435          386 GLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       386 ~~~~e~i~~~~~~l~~~l  403 (407)
                      .++++|++++++.|++++
T Consensus       358 ~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         358 DMTESDFDRVITALHQIA  375 (376)
T ss_dssp             TCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            257789999999998875

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=3.5e-17  Score=149.90  Aligned_cols=280  Identities=16%  Similarity=0.168  Sum_probs=191.6

Q ss_pred             cCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh---
Q 015435           70 EYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT---  144 (407)
Q Consensus        70 ~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~---  144 (407)
                      .|+.  .+....|.+.++++. +.       +..++  ++||+.|+..+  ++..+++||.|++++..|.+....++   
T Consensus        52 ~Y~R~~nPT~~~LE~~la~LE-g~-------~~a~~--~~SGmaAi~~~--l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~  119 (392)
T d1gc0a_          52 FYSRISNPTLNLLEARMASLE-GG-------EAGLA--LASGMGAITST--LWTLLRPGDEVLLGNTLYGCTFAFLHHGI  119 (392)
T ss_dssp             -----CCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESSCCSHHHHHHHHTG
T ss_pred             eecCCCChHHHHHHHHHHHHh-CC-------cceee--hhhHHHHHHHH--HHhhccCCCeeecccccchhhhhhhhhhh
Confidence            3554  334677888888877 42       56777  99999999998  56778999999999999998877655   


Q ss_pred             -hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccc
Q 015435          145 -LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGF  223 (407)
Q Consensus       145 -~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~  223 (407)
                       ..|+++..++.       .|++++++++.  +++++|++ -+|.|||..+.   |+++|+++|+++|+++++|..|+.-
T Consensus       120 ~~~Gi~~~~~d~-------~d~~~~~~ai~--~~t~lv~~-Esp~NP~l~v~---Di~~i~~ia~~~g~~~vvDnT~atP  186 (392)
T d1gc0a_         120 GEFGVKLRHVDM-------ADLQALEAAMT--PATRVIYF-ESPANPNMHMA---DIAGVAKIARKHGATVVVDNTYCTP  186 (392)
T ss_dssp             GGGTCEEEEECT-------TCHHHHHHHCC--TTEEEEEE-ESSCTTTCCCC---CHHHHHHHHGGGTCEEEEECTTTHH
T ss_pred             ccCCcccccCCc-------cCHHHHHHhCC--CCCeEEEe-cccccceeeec---chHHHHHHHHhcCCEEEEecCccCc
Confidence             56888887743       48899999988  78888888 89999999977   5888899999999999999997532


Q ss_pred             cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHH
Q 015435          224 ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT  303 (407)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (407)
                      ..-         .  +-...-.|++.|.+|.++..|.-+|.+  ++.+++...++  ++...........++..+..+..
T Consensus       187 ~~~---------~--Pl~~GaDivihS~TKyi~Ghsd~~~G~--v~~~~~~~~~~--r~~~~~~~~G~~~~p~da~ll~r  251 (392)
T d1gc0a_         187 YLQ---------R--PLELGADLVVHSATKYLSGHGDITAGI--VVGSQALVDRI--RLQGLKDMTGAVLSPHDAALLMR  251 (392)
T ss_dssp             HHC---------C--GGGGTCSEEEEETTTTTTCSSSCCCEE--EEECHHHHHHH--HHTHHHHHTCCCCCHHHHHHHHH
T ss_pred             ccc---------C--hHHhCCCEEEEecceeecCCccccccc--ccchhHHHHHH--HHHHHHHccCCcCChhhHHHHHh
Confidence            211         0  112245689999999998777666666  34444332222  12223333344677777777777


Q ss_pred             HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-cc-----------------cCCceeEEec-CCCHHH
Q 015435          304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-HI-----------------IKQIGMFTFT-GLNSEQ  364 (407)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~-----------------~~~~~~~~~~-~~~~~~  364 (407)
                      -++..          ..+.++..++...+.+.|++.+.   +. +.                 ...||++.|. .-+.+.
T Consensus       252 gl~TL----------~lRm~~~~~nA~~lA~~L~~hp~---V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~  318 (392)
T d1gc0a_         252 GIKTL----------NLRMDRHCANAQVLAEFLARQPQ---VELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGA  318 (392)
T ss_dssp             HHTTH----------HHHHHHHHHHHHHHHHHHHTCTT---EEEEEEC----------------CCTTEEEEEETTHHHH
T ss_pred             ccccH----------HHHHHHHHHHHHHHHHHHHhCCC---ccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHH
Confidence            76654          45556677788888898887642   11 11                 1135665554 334455


Q ss_pred             HHHhHhhccEEE-cC--C-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          365 VAFMTKEYHIYM-TS--D-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       365 ~~~~l~~~gi~~-~~--g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +.++++.-.++- .+  |                             |  |||++-   |+.+.+++-|.++|+.
T Consensus       319 ~~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGl---Ed~eDLi~Dl~~AL~a  390 (392)
T d1gc0a_         319 GRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL---EDIDDLLADVQQALKA  390 (392)
T ss_dssp             HHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcceEeeccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEeee---CCHHHHHHHHHHHHHh
Confidence            556665544421 11  1                             1  888873   8999999999999874

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=4.8e-18  Score=159.84  Aligned_cols=351  Identities=10%  Similarity=0.014  Sum_probs=209.5

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCC--CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL--PIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~--~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++++||+..|....+.| ..++++++++.+++.  ......+.  +.....++.+.+.+.. ..     ..+.+.+ 
T Consensus        39 D~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~q~~--~~~~~~~~~~~~~~~~~l~~~l~~~~-~~-----~~~~v~f-  108 (429)
T d1s0aa_          39 LSDGRRLVDGMSSWWAAIHG-YNHPQLNAAMKSQID--AMSHVMFGGITHAPAIELCRKLVAMT-PQ-----PLECVFL-  108 (429)
T ss_dssp             ETTSCEEEESSTTTTTCTTC-BSCHHHHHHHHHHHH--HCSCCCCSSEECHHHHHHHHHHHHHS-CT-----TCCEEEE-
T ss_pred             ECCCCEEEECcccHHHHhhc-CCcHHHHHHHHHHHH--hcCCcccCCccchHHHHHHHHHHhhh-cc-----Ccceeee-
Confidence            45678999999886655677 667788888888776  21111111  1112233444444443 11     1378999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc-----CCCeEEecCCCCCChHHHHh-hcC-------------ceeeEEEeec----CCCC
Q 015435          105 QCLSGTGSLRVGAEFLARHY-----HQLTIYIPQPTWGNHPKVFT-LAG-------------LSVKTYRYYD----PATR  161 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~-----~gd~Vi~~~p~y~~~~~~~~-~~G-------------~~~~~v~~~~----~~~~  161 (407)
                       +++|++|++.++++.+...     ...+|+...-+|++...... ..|             ......|...    ....
T Consensus       109 -~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (429)
T d1s0aa_         109 -ADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWD  187 (429)
T ss_dssp             -ESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCC
T ss_pred             -ccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccc
Confidence             9999999999988876542     23578888888876543222 111             1111222110    1111


Q ss_pred             CcChhhHHHHHHcCCCC-cEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH
Q 015435          162 GLNFQGLLEDLRAAPSG-AIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV  239 (407)
Q Consensus       162 ~~d~~~l~~~i~~~~~~-~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~  239 (407)
                      .-+++.+++.+.+.+.. .++++.+-.++..|. .++++.+++|.++|++||+++|+||+..+|+..+.   .+....+ 
T Consensus       188 ~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~---~~~~~~~-  263 (429)
T d1s0aa_         188 ERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFACEHA-  263 (429)
T ss_dssp             GGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-
T ss_pred             hhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc---ccccccc-
Confidence            22455555555443344 444443222344455 47899999999999999999999999999977652   2222222 


Q ss_pred             HcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH-hhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435          240 ADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL-KLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLEL  318 (407)
Q Consensus       240 ~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  318 (407)
                      .-..++++   ++|.++..+..+|.+  ++. +++.+.+...- ..+....+++.+++++.++.+.|+..+        -
T Consensus       264 ~v~PDi~~---~gK~l~gG~~p~~av--~~~-~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~--------~  329 (429)
T d1s0aa_         264 EIAPDILC---LGKALTGGTMTLSAT--LTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILE--------S  329 (429)
T ss_dssp             TCCCSEEE---ECGGGGTSSSCCEEE--EEC-HHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH--------T
T ss_pred             eecccccc---cccccccccccccch--hhH-HHHHhccCCCCCcceeecCCCCCCcccchhhhccccccc--------c
Confidence            11233333   789998566899998  455 44333322210 111123455778888988888876331        1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec---CCCHHHHHHhHhhccEEEcCCC---eEEec-CCCCCC
Q 015435          319 KAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT---GLNSEQVAFMTKEYHIYMTSDG---RISMA-GLSSKT  391 (407)
Q Consensus       319 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~gg---Ris~~-~~~~e~  391 (407)
                      ++..++.+++.+++.+.|+++..+..+.-+...|.++.+-   +.....+...+.++|+.+.+.|   |++.. .++++|
T Consensus       330 ~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~~~~~~~~~~~~~~~Gl~~~~~g~~i~~~Ppl~it~~e  409 (429)
T d1s0aa_         330 GDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQ  409 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBCHHHHHHHHHHTTEECCCBTTEEEECCCTTCCHHH
T ss_pred             ccccchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEecCcccHHHHHHHHHHCCcEEEecCCEEEEeCCcCCCHHH
Confidence            2455677778888888887763211122223334433321   2345556666666899999988   55432 248899


Q ss_pred             hhHHHHHHHHHHHhh
Q 015435          392 VPHLTDAIHAAVTRM  406 (407)
Q Consensus       392 i~~~~~~l~~~l~~~  406 (407)
                      +++++++|.++++++
T Consensus       410 id~~~~~l~~al~e~  424 (429)
T d1s0aa_         410 LQRLTAAVNRAVQDE  424 (429)
T ss_dssp             HHHHHHHHHHHTSSG
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998753

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.78  E-value=1.7e-18  Score=165.82  Aligned_cols=308  Identities=12%  Similarity=0.109  Sum_probs=183.9

Q ss_pred             ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhc-----CCCeEEecCCCCCChHHHH
Q 015435           69 KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY-----HQLTIYIPQPTWGNHPKVF  143 (407)
Q Consensus        69 ~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~-----~gd~Vi~~~p~y~~~~~~~  143 (407)
                      ..|....+..+|++++++++ +.       +++++  |+||++|+.++++++....     ..+.++...+.|..+....
T Consensus        69 ~~y~~~~~~~~le~~~a~l~-g~-------~~~~~--~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~  138 (465)
T d1ax4a_          69 EAYAGSRNYYDLKDKAKELF-NY-------DYIIP--AHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV  138 (465)
T ss_dssp             CCSSSCHHHHHHHHHHHHHH-CC-------CEEEE--ESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHH
T ss_pred             hhhccChHHHHHHHHHHHHH-CC-------CEEEE--CCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHH
Confidence            34888888999999999988 64       78999  9999999999976663221     2234566666666666677


Q ss_pred             hhcCceeeEEEee--------cCCCCCcChhhHHHHHHcC-CCCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCce
Q 015435          144 TLAGLSVKTYRYY--------DPATRGLNFQGLLEDLRAA-PSGAIVLLHACAHNPT-GVDPTLEQWEQIRQLMRSKGLL  213 (407)
Q Consensus       144 ~~~G~~~~~v~~~--------~~~~~~~d~~~l~~~i~~~-~~~~~v~i~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~  213 (407)
                      ...|..++.++..        ++..+.+|++++++++.+. +....++++..++|.. |..++.+++++|.++|++||++
T Consensus       139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~  218 (465)
T d1ax4a_         139 ELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIF  218 (465)
T ss_dssp             HHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCC
T ss_pred             HHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCE
Confidence            7888887766431        2344678999999999753 2233334435555554 4568999999999999999999


Q ss_pred             eeeccccccccC----------CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhh-HHHHHHHH
Q 015435          214 PFFDSAYQGFAS----------GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV-ASRVESQL  282 (407)
Q Consensus       214 li~D~~y~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~-~~~~~~~~  282 (407)
                      +|+|+++.....          .+.  ....+..-.. .-..++..|.+|..  .+.+.|++  ++++... ........
T Consensus       219 l~~D~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~-~~~d~~s~s~~k~~--~~~~~g~l--~~~~~~~~~~~~~~~~  291 (465)
T d1ax4a_         219 VVMDSARFCENAYFIKARDPKYKNA--TIKEVIFDMY-KYADALTMSAKKDP--LLNIGGLV--AIRDNEEIFTLARQRC  291 (465)
T ss_dssp             EEEECTTHHHHHHHHHHHCGGGTTC--CHHHHHHHHG-GGCSEEEEETTSTT--CCSSCEEE--EESSCHHHHHHHHHHH
T ss_pred             EEEECcchhhhhccccccccccccc--chhhhccccc-cccceeEeecccCc--ccccceeE--eecchHHHHHhhhccc
Confidence            999999753210          000  1111111001 11234555666654  56667887  4654432 22211111


Q ss_pred             hhhhhcccC-CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-
Q 015435          283 KLVIRPMYS-SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-  360 (407)
Q Consensus       283 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-  360 (407)
                      ......... ......+.++...+...        ..+...++..++.+++.+.|++.+    +....+.++...+.+. 
T Consensus       292 ~~~~~~~~~~~~~~~~~~a~~~~~~e~--------~~~~~~~~~~~~~~~l~~~L~~~g----~~~v~~~~~~~~~~~~~  359 (465)
T d1ax4a_         292 VPMEGFVTYGGLAGRDMAAMVQGLEEG--------TEEEYLHYRIGQVKYLGDRLREAG----IPIQYPTGGHAVFVDCK  359 (465)
T ss_dssp             HHHTCSTTTTTCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHHHTT----CCBCSSCCSSEEEEEST
T ss_pred             cccccCCCcchhhHHHHHHHhhhhHHh--------hhHHHHHHHHHHHHHHHHHHHhhc----CccccCCCcceeeeehh
Confidence            111111111 22222222222222110        112333445567788999999888    5555555555544311 


Q ss_pred             ------------CHHHHHHhHhhccEEEcCCC---------------------eEEecC--CCCCChhHHHHHHHHHHHh
Q 015435          361 ------------NSEQVAFMTKEYHIYMTSDG---------------------RISMAG--LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       361 ------------~~~~~~~~l~~~gi~~~~gg---------------------Ris~~~--~~~e~i~~~~~~l~~~l~~  405 (407)
                                  ....+..++.+.||...+.+                     |+++..  .|+||+++++++|++++++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~  439 (465)
T d1ax4a_         360 KLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK  439 (465)
T ss_dssp             TTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred             hhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence                        12345677777898764311                     777542  3779999999999998764

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.4e-18  Score=160.90  Aligned_cols=323  Identities=12%  Similarity=0.052  Sum_probs=197.3

Q ss_pred             cccchhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH  125 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~  125 (407)
                      |.|.++-+++++++.  .....+.++  ..-+.+.|+.+++++ +...    +..|++  +.|||++++.++  ...+.+
T Consensus        25 pGP~~~~~~Vl~am~--~~~i~HRs~~f~~i~~ea~~~l~~ll-g~~~----~~~ii~--~gsgT~a~~~~i--~~l~~~   93 (388)
T d1h0ca_          25 PGPSNLPPRIMAAGG--LQMIGSMSKDMYQIMDEIKEGIQYVF-QTRN----PLTLVI--SGSGHCALEAAL--VNVLEP   93 (388)
T ss_dssp             SSCCCCCHHHHHHHT--CCCCCTTSHHHHHHHHHHHHHHHHHH-TCCC----SEEEEE--SSCHHHHHHHHH--HHHCCS
T ss_pred             CCCCCCCHHHHHHhC--cCCCCCCCHHHHHHHHHHHHHHHHHh-CCCC----CcEEEE--cCcHHHHHHHHH--HHhhcc
Confidence            444445556666665  222333332  223778888898888 5421    135877  999999999994  556889


Q ss_pred             CCeEEecCCCCCChHH--HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435          126 QLTIYIPQPTWGNHPK--VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI  203 (407)
Q Consensus       126 gd~Vi~~~p~y~~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i  203 (407)
                      |+++++....+.....  .....+..+..+..  +....+|.+++++.+.. ++++++++ ++.+|.||++.   ++++|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~v~~-~~~~n~tG~i~---pi~~i  166 (388)
T d1h0ca_          94 GDSFLVGANGIWGQRAVDIGERIGARVHPMTK--DPGGHYTLQEVEEGLAQ-HKPVLLFL-THGESSTGVLQ---PLDGF  166 (388)
T ss_dssp             SCCEEECBSSHHHHHHHHHHHHHC--CBCCBC--CTTCCCCHHHHHHHHHH-HCCSEEEE-ESEETTTTEEC---CCTTH
T ss_pred             CCceeeecccceeeeecccccccccccccccc--CCccccchHHHHHHhcc-CCcceEEE-eeeeecccccc---CHHHH
Confidence            9999999877664433  34466777777766  45577888888887763 35677777 77899999965   47788


Q ss_pred             HHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH-
Q 015435          204 RQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL-  282 (407)
Q Consensus       204 ~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~-  282 (407)
                      +++|++||+++++|.+.+..... .+.         ......+++.|..|.++.++ .+|++  +.. ++..+.+.... 
T Consensus       167 ~~~~~~~g~~~~vD~~qs~g~~~-~d~---------~~~~~D~~~~s~~K~~~gp~-g~~~~--~~~-~~~~~~~~~~~~  232 (388)
T d1h0ca_         167 GELCHRYKCLLLVDSVASLGGTP-LYM---------DRQGIDILYSGSQKALNAPP-GTSLI--SFS-DKAKKKMYSRKT  232 (388)
T ss_dssp             HHHHHTTTCEEEEECTTTTTTSC-CCT---------TTTTCSEEEEESSSTTCCCT-TCEEE--EEC-HHHHHHHTTCSS
T ss_pred             HHHhhcccccceecccccccccc-ccc---------cccccceecccccccccCCC-ceEEE--eec-HHHHHhhhhccc
Confidence            88899999999999986533321 111         12234577788888876443 23444  333 33222221100 


Q ss_pred             ------------hh------hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435          283 ------------KL------VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD  344 (407)
Q Consensus       283 ------------~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  344 (407)
                                  ..      ..+....+++.....+...++....     ...++...++..+..+++++.+...+....
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~-----~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~  307 (388)
T d1h0ca_         233 KPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIA-----EQGLENSWRQHREAAAYLHGRLQALGLQLF  307 (388)
T ss_dssp             CCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHHTCCBS
T ss_pred             cccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHH-----HhccccccccccchhHHHHHHHhhcCcccc
Confidence                        00      0011122344444444444333111     123567777888888899998888773110


Q ss_pred             c-ccccCCcee--EEe-cCCCHHH-HHHhHhhccEEEcCCC--------eEE-ecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          345 W-SHIIKQIGM--FTF-TGLNSEQ-VAFMTKEYHIYMTSDG--------RIS-MAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       345 ~-~~~~~~~~~--~~~-~~~~~~~-~~~~l~~~gi~~~~gg--------Ris-~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                      . +......+.  |.+ -+++.+. ...+++++||.+..|.        ||| ++. .+.||+++++++|++++++++
T Consensus       308 ~~~~~~rs~~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~  385 (388)
T d1h0ca_         308 VKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCP  385 (388)
T ss_dssp             SCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSC
T ss_pred             cCCHHHcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            1 000011122  222 2566655 5567788899988762        998 653 467899999999999999874

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=5.7e-16  Score=141.51  Aligned_cols=282  Identities=15%  Similarity=0.114  Sum_probs=193.3

Q ss_pred             cCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh---
Q 015435           70 EYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT---  144 (407)
Q Consensus        70 ~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~---  144 (407)
                      .|+.  .+....|.+.++++. +.       +..++  ++||+.|+..+  ++..+.+||.|++++..|.+....+.   
T Consensus        43 ~Y~R~~nPt~~~le~~la~LE-gg-------~~a~~--~sSGMaAi~~~--l~~l~~~gd~vv~~~~~yg~t~~~~~~~~  110 (384)
T d1cs1a_          43 DYSRRGNPTRDVVQRALAELE-GG-------AGAVL--TNTGMSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLA  110 (384)
T ss_dssp             SBTTTCCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHh-CC-------CceEE--ecChHHHHHHH--Hhhcccccceecccccccchhhhhhhhhh
Confidence            3544  334677888888877 42       56777  99999999988  46668899999999999977755444   


Q ss_pred             -hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccc
Q 015435          145 -LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGF  223 (407)
Q Consensus       145 -~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~  223 (407)
                       ..|..+..++.       .|.+++++.+.  +++++|++ -+|.|||..+.   |+++|+++|+++|+++|+|..+...
T Consensus       111 ~~~g~~~~~~d~-------~d~~~~~~~~~--~~t~~v~~-EspsNP~l~v~---Di~~i~~ia~~~g~~~vVDNT~atP  177 (384)
T d1cs1a_         111 KRGCYRVLFVDQ-------GDEQALRAALA--EKPKLVLV-ESPSNPLLRVV---DIAKICHLAREVGAVSVVDNTFLSP  177 (384)
T ss_dssp             TTTSCEEEEECT-------TCHHHHHHHHH--TCCSEEEE-ECSCTTTCCCC---CHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred             cccccccccccC-------CCHHHHHhhcc--ccccEEEE-eccccccceec---cHHHHhhhhhhcCcEEEEeccccCc
Confidence             45666666632       47889999998  78899888 89999999977   4888888899999999999998543


Q ss_pred             cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHH
Q 015435          224 ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVAT  303 (407)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (407)
                      ..-.      +     -.....|++.|.+|.++..|.-+|.++ ++++++..+.    +...........++..+..+..
T Consensus       178 ~~~~------P-----l~~GaDiVvhS~TKyi~Ghsdv~~G~v-v~~~~~~~~~----~~~~~~~~G~~~~p~~a~ll~r  241 (384)
T d1cs1a_         178 ALQN------P-----LALGADLVLHSCTKYLNGHSDVVAGVV-IAKDPDVVTE----LAWWANNIGVTGGAFDSYLLLR  241 (384)
T ss_dssp             TTCC------G-----GGGTCSEEEEETTTTTTCSSCCCCEEE-EESSHHHHHH----HHHHHHHHTCBCCHHHHHHHHH
T ss_pred             cccc------c-----cccCCCEEEEccccccccCCCcccccc-cCCchhhhhh----hhhhhhhhhhccccccHHHHhh
Confidence            3221      0     112356889999999987776666653 5655554333    3333333344666667777776


Q ss_pred             HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCcc---------cccCCceeEEec-CCCHHHHHH
Q 015435          304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT------PGDWS---------HIIKQIGMFTFT-GLNSEQVAF  367 (407)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~---------~~~~~~~~~~~~-~~~~~~~~~  367 (407)
                      -|+..          ..+.++..++...+.+.|++.+.      |..-.         .....|+++.+. .-+.+.+.+
T Consensus       242 gL~TL----------~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~  311 (384)
T d1cs1a_         242 GLRTL----------VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRR  311 (384)
T ss_dssp             HHTTH----------HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHH
T ss_pred             ccchh----------HHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHH
Confidence            66644          34556677888899999987652      11000         001135555544 335666677


Q ss_pred             hHhhccEEE-cC--C-------------------------C------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          368 MTKEYHIYM-TS--D-------------------------G------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       368 ~l~~~gi~~-~~--g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      ++++..++. .+  |                         |      |+|++-   |+.+.+++-|+++|+.
T Consensus       312 f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl---Ed~eDLi~Dl~~AL~a  380 (384)
T d1cs1a_         312 FLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRA  380 (384)
T ss_dssp             HHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred             HHHhCCcceeccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHHH
Confidence            777654432 11  1                         1      888773   9999999999999975

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.75  E-value=1.1e-15  Score=140.00  Aligned_cols=298  Identities=15%  Similarity=0.089  Sum_probs=200.0

Q ss_pred             cchhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC
Q 015435           50 VLNVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL  127 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd  127 (407)
                      ..+..+....... .......|+.  .+....|.++++++. +.       +..++  ++||+.|+..+  ++..+.+||
T Consensus        41 ~~~~~~~~~~~~~-~~~~~~~Y~R~~nPt~~~LE~~la~LE-gg-------~~a~~--~sSGMaAi~~~--l~~l~~~Gd  107 (398)
T d1qgna_          41 FFNKTSELIDFKE-KRRASFEYGRYGNPTTVVLEEKISALE-GA-------ESTLL--MASGMCASTVM--LLALVPAGG  107 (398)
T ss_dssp             CBSSHHHHHHHHT-TSSCCCCBGGGCCHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHH--HHHHSCSSC
T ss_pred             EeCCHHHHHHHhc-CCcCCceecCCCChHHHHHHHHHHHHh-CC-------ceEEE--ecCcchHHHHH--Hhhcccccc
Confidence            3344445444443 2222334554  334667788888877 42       56778  99999999998  466688999


Q ss_pred             eEEecCCCCCChHHHHh----hcCceeeEEEeecCCCCCcChhhHHH-HHHcCCCCcEEEEecCCCCCCCCCCCHHHHHH
Q 015435          128 TIYIPQPTWGNHPKVFT----LAGLSVKTYRYYDPATRGLNFQGLLE-DLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQ  202 (407)
Q Consensus       128 ~Vi~~~p~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~-~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~  202 (407)
                      .|++++..|.+....++    ..|..+..++.       .+.++.++ ...  ++++++++ -+|.|||..+.+   +++
T Consensus       108 ~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~-------~~~~~~~~~~~~--~~t~~v~~-EspsNP~l~v~D---i~~  174 (398)
T d1qgna_         108 HIVTTTDCYRKTRIFIETILPKMGITATVIDP-------ADVGALELALNQ--KKVNLFFT-ESPTNPFLRCVD---IEL  174 (398)
T ss_dssp             EEEEETTSCHHHHHHHHHTGGGGTCEEEEECS-------SCHHHHHHHHHH--SCEEEEEE-ESSCTTTCCCCC---HHH
T ss_pred             cccccccccchhhhhhcccccccccccccccc-------cchhhhhhhhcc--ccceEEEc-cCccccccccch---HHH
Confidence            99999999988766554    66877777743       24444444 444  67788887 899999999774   888


Q ss_pred             HHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH
Q 015435          203 IRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL  282 (407)
Q Consensus       203 i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~  282 (407)
                      |+++|+++|+++|+|..+.....-.+         +  ...-.|++.|.+|.++..+.-+|.+  ++.+++....+    
T Consensus       175 ia~ia~~~g~~~vVDnT~atP~~~~P---------l--~~GaDiVihS~TKy~~Ghsdv~~G~--v~~~~~~~~~~----  237 (398)
T d1qgna_         175 VSKLCHEKGALVCIDGTFATPLNQKA---------L--ALGADLVLHSATKFLGGHNDVLAGC--ISGPLKLVSEI----  237 (398)
T ss_dssp             HHHHHHHTTCEEEEECTTTCTTTCCT---------T--TTTCSEEEECTTTTTTCSSSCCCEE--EEECHHHHHHH----
T ss_pred             HHHHHhhcCCEEEecceeeccccCCc---------h--hhCCCEEEEechhhcCcccceeehh--hcchhhhhhhh----
Confidence            89999999999999999864332210         1  1234689999999998777766666  46666544443    


Q ss_pred             hhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-cc-------------
Q 015435          283 KLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-HI-------------  348 (407)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~-------------  348 (407)
                      ...........++.....+..-++.          +..+.++..++...+.+.|++.+.   +. +.             
T Consensus       238 ~~~~~~~G~~l~p~~a~ll~rgl~T----------L~lRm~~~~~nA~~lA~~L~~hp~---V~~V~yPgL~s~p~~~~~  304 (398)
T d1qgna_         238 RNLHHILGGALNPNAAYLIIRGMKT----------LHLRVQQQNSTALRMAEILEAHPK---VRHVYYPGLQSHPEHHIA  304 (398)
T ss_dssp             HHHHHHHCCCCCHHHHHHHHHHGGG----------HHHHHHHHHHHHHHHHHHHHTCTT---EEEEECTTSSSSTTHHHH
T ss_pred             hhhcccCCCcCCHHHHHHHHhcchH----------HHHHHHHHHHHHHHHHHHHHhCCC---eeecCCCCCCCCcchhhh
Confidence            3344444446677777777766654          345556777888899999987652   11 11             


Q ss_pred             ----cCCceeEEec-CCCHHHHHHhHhhccEEE-cC--C-------------------------C------eEEecCCCC
Q 015435          349 ----IKQIGMFTFT-GLNSEQVAFMTKEYHIYM-TS--D-------------------------G------RISMAGLSS  389 (407)
Q Consensus       349 ----~~~~~~~~~~-~~~~~~~~~~l~~~gi~~-~~--g-------------------------g------Ris~~~~~~  389 (407)
                          ...|+++.|. .-+.+.+.+++++..+.- .+  |                         |      |||++-   
T Consensus       305 ~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl---  381 (398)
T d1qgna_         305 KKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV---  381 (398)
T ss_dssp             HHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS---
T ss_pred             hhhcCCCCceeeeeecCCHHHHHHHHHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc---
Confidence                1236666664 336666666666654422 11  1                         1      888773   


Q ss_pred             CChhHHHHHHHHHHHhh
Q 015435          390 KTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~~  406 (407)
                      |+.+.+++.|+++|+.+
T Consensus       382 Ed~eDLi~Dl~~AL~~i  398 (398)
T d1qgna_         382 EDFDDLKADILQALDSI  398 (398)
T ss_dssp             SCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhcC
Confidence            89999999999999864

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.74  E-value=7.7e-17  Score=150.71  Aligned_cols=344  Identities=11%  Similarity=0.047  Sum_probs=190.8

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC  106 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t  106 (407)
                      ...++++||+..|....+.| ..++++++++.+++. ................+.+.+++ +.+.       +.+.+  +
T Consensus        35 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~v~~--~  102 (404)
T d1z7da1          35 DVNDKRYYDFLSAYSSVNQG-HCHPNILNAMINQAK-NLTICSRAFFSVPLGICERYLTN-LLGY-------DKVLM--M  102 (404)
T ss_dssp             ETTCCEEEESSHHHHTTTTC-BTCHHHHHHHHHHHT-TCSCCCTTSEEHHHHHHHHHHHH-HHTC-------SEEEE--E
T ss_pred             ECCCCEEEEccccHHHHhhh-cCcHHHHHHHHHHHH-hCCCcccccchHHHHHHHHhhhh-cccc-------ceeee--e
Confidence            34678999999997655667 567778888888875 11111111111112222222333 3232       67888  9


Q ss_pred             CCcccHHHHHHHHHHhhc--------CCCeEEecCCCCCChHHHHhhcC----ceeeEEEeecCCCC---CcChhhHHHH
Q 015435          107 LSGTGSLRVGAEFLARHY--------HQLTIYIPQPTWGNHPKVFTLAG----LSVKTYRYYDPATR---GLNFQGLLED  171 (407)
Q Consensus       107 ~g~t~a~~~~~~~~~~~~--------~gd~Vi~~~p~y~~~~~~~~~~G----~~~~~v~~~~~~~~---~~d~~~l~~~  171 (407)
                      .+|+++.+.+.++.....        ....++...-+|...........    .+....|.. +...   .-+.+.++..
T Consensus       103 ~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~  181 (404)
T d1z7da1         103 NTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFA-PQFSKVPYDDLEALEEE  181 (404)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------CEEEECTTCHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCC-ccccccccchHHHHHHH
Confidence            999999999987765432        11356666666655433322111    111111110 0000   1245666665


Q ss_pred             HHcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEe
Q 015435          172 LRAAPSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQS  250 (407)
Q Consensus       172 i~~~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  250 (407)
                      +. .++..++++ -.-+...|.. ++++.+++|.++|++||+++|+||+..+|+..+.   .+....+. -..+++   +
T Consensus       182 ~~-~~~iAavi~-EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~---~~~~e~~g-v~PDiv---t  252 (404)
T d1z7da1         182 LK-DPNVCAFIV-EPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK---LLCVHHYN-VKPDVI---L  252 (404)
T ss_dssp             HT-STTEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGGT-CCCSEE---E
T ss_pred             hc-CCCEEEEEE-EEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc---cccccccC-CCCCEE---E
Confidence            54 123345444 2223345654 6788899999999999999999999998876542   23332222 122333   5


Q ss_pred             cCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 015435          251 YAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQ  330 (407)
Q Consensus       251 ~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  330 (407)
                      ++|.++..+..+|.+  +..     +++.+.+.......+++.+++++.++.+.|+-..- +   +..+...+.-....+
T Consensus       253 ~gK~l~gG~~p~~~v--~~~-----~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~-~---~~~~~~~~~~~~~~~  321 (404)
T d1z7da1         253 LGKALSGGHYPISAV--LAN-----DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN-E---KLCENAEKLGGPFLE  321 (404)
T ss_dssp             ECGGGGTTSSCCEEE--EEC-----HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH-T---THHHHHHHHHHHHHH
T ss_pred             EcccccCCCCCcccc--cch-----HHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhc-c---hhhhhhccchhHHHH
Confidence            899998444788998  566     55666565554455667889999988888763210 0   112222222223333


Q ss_pred             HHHHHHHhcCCCCCcccccCCceeEEec----CCCHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHHH
Q 015435          331 QLFDALSARGTPGDWSHIIKQIGMFTFT----GLNSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIHA  401 (407)
Q Consensus       331 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~  401 (407)
                      .+.+.+++.+.   +..+...|.++.+.    ......+...+.++|+.+.+.+    ||+.+- ++++++++++++|++
T Consensus       322 ~l~~~~~~~~~---v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l~~  398 (404)
T d1z7da1         322 NLKRELKDSKI---VRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVK  398 (404)
T ss_dssp             HHHHHHTTCTT---EEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCC---eEEEEeeCcEEEEEEcCCcccHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence            34444433332   22233344444322    1233334444555899998754    665332 588999999999999


Q ss_pred             HHHhh
Q 015435          402 AVTRM  406 (407)
Q Consensus       402 ~l~~~  406 (407)
                      +++++
T Consensus       399 alk~~  403 (404)
T d1z7da1         399 TVKFF  403 (404)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            99876

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.73  E-value=2.7e-16  Score=146.25  Aligned_cols=309  Identities=16%  Similarity=0.075  Sum_probs=195.2

Q ss_pred             hhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEe
Q 015435           52 NVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYI  131 (407)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~  131 (407)
                      +..+++.+.+.  .+... +....-+.++.+.+++++ +.       ++++.  +++||.|+.++++.+ .+.+||+|++
T Consensus        14 ~~~~~~~~~l~--~g~~~-~~~g~~v~~fE~~~a~~~-g~-------~~~v~--~~SGt~Al~lal~~l-~~~~gdeVi~   79 (384)
T d1b9ha_          14 AERNGLVRALE--QGQWW-RMGGDEVNSFEREFAAHH-GA-------AHALA--VTNGTHALELALQVM-GVGPGTEVIV   79 (384)
T ss_dssp             HHHHHHHHHHH--TSCCB-TTTCSHHHHHHHHHHHHT-TC-------SEEEE--ESCHHHHHHHHHHHT-TCCTTCEEEE
T ss_pred             HHHHHHHHHHH--cCCee-ecCCHHHHHHHHHHHHHH-Cc-------CeEEE--eCCHHHHHHHHHHHc-CCCCCCEEEE
Confidence            44455555554  22111 222334788999999988 54       67888  999999999995222 2579999999


Q ss_pred             cCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015435          132 PQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKG  211 (407)
Q Consensus       132 ~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~  211 (407)
                      |..+|.....++...|.+++.+++ ++.++.+|++.+++.+.  ++++++++    .+..|..   .++.+|.++|++++
T Consensus        80 p~~t~~a~~~ai~~~g~~p~~~d~-~~~~~~~d~~~~~~~i~--~~tk~i~~----~~~~g~~---~d~~~i~~~~~~~~  149 (384)
T d1b9ha_          80 PAFTFISSSQAAQRLGAVTVPVDV-DAATYNLDPEAVAAAVT--PRTKVIMP----VHMAGLM---ADMDALAKISADTG  149 (384)
T ss_dssp             ESSSCTHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHCC--TTEEEECC----BCGGGCC---CCHHHHHHHHHHHT
T ss_pred             eccccccccccccccccccccccc-cccccccchhhhccccc--cccccccc----ccccccc---cccccchhhhhhhh
Confidence            999999999999999999999998 46778899999999887  66777655    3455653   36788888899999


Q ss_pred             ceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhc---
Q 015435          212 LLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRP---  288 (407)
Q Consensus       212 ~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~---  288 (407)
                      +.+|+|.+++....-..  .  .   ....++-.++.++.+|.++ .|. -|.+  ++.|+++.+.+.....+....   
T Consensus       150 i~lieD~a~a~ga~~~g--~--~---~g~~g~~~~~Sf~~~K~i~-~g~-GG~i--~t~~~~~~~~~~~~~~~g~~~~~~  218 (384)
T d1b9ha_         150 VPLLQDAAHAHGARWQG--K--R---VGELDSIATFSFQNGKLMT-AGE-GGAV--VFPDGETEKYETAFLRHSCGRPRD  218 (384)
T ss_dssp             CCBCEECTTCTTCEETT--E--E---GGGSSSCEEEECCTTSSSC-SSS-CEEE--EECTTCHHHHHHHHHHTBTTCCTT
T ss_pred             hhhhhhhceecccccCC--E--e---cCcccccceeccccccccc-ccc-cchh--hhhhHHHHHHHHHHHhcCCCCccc
Confidence            99999999764432110  1  0   2334566777778899986 343 4777  688998888766654432110   


Q ss_pred             ----------ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcccccCCce--e
Q 015435          289 ----------MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP--GDWSHIIKQIG--M  354 (407)
Q Consensus       289 ----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~--~  354 (407)
                                ...-++.+........|+.          +++..++-+++.+++.+.|.++..-  ...........  +
T Consensus       219 ~~~~~~~~~G~n~rms~l~Aaig~~qL~~----------ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~  288 (384)
T d1b9ha_         219 DRRYFHKIAGSNMRLNEFSASVLRAQLAR----------LDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYM  288 (384)
T ss_dssp             CSSCCCCSCCCBCBCBHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSE
T ss_pred             cccccccccccccccccchhhhhhhhhhh----------cccchhhhhhhhhhhhhhhhccccccccccccccccccccc
Confidence                      0011223333333333332          3333444456777777888765420  00011111111  2


Q ss_pred             EEe-c-CCC---HHHHHHhHhhccEEEcCC-------------C---------------------e-EEec---CCCC-C
Q 015435          355 FTF-T-GLN---SEQVAFMTKEYHIYMTSD-------------G---------------------R-ISMA---GLSS-K  390 (407)
Q Consensus       355 ~~~-~-~~~---~~~~~~~l~~~gi~~~~g-------------g---------------------R-is~~---~~~~-e  390 (407)
                      +.+ + ...   .+.+.+.|.++||.+...             |                     | |++.   .++. +
T Consensus       289 ~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~  368 (384)
T d1b9ha_         289 AMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEP  368 (384)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHH
T ss_pred             ccceecccccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHH
Confidence            222 2 223   234666667789976421             0                     2 3333   2454 6


Q ss_pred             ChhHHHHHHHHHHHh
Q 015435          391 TVPHLTDAIHAAVTR  405 (407)
Q Consensus       391 ~i~~~~~~l~~~l~~  405 (407)
                      |++..++.|++++++
T Consensus       369 ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         369 ELHATAEIIADAVAR  383 (384)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            899999999998864

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.73  E-value=4.5e-17  Score=152.94  Aligned_cols=334  Identities=12%  Similarity=0.051  Sum_probs=190.6

Q ss_pred             CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc---CCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE---YLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      +++|-|..+.    -| |.|..+++++.+.+.........   +..  ..-.++.|+.+++++ +     .++++|++  
T Consensus        26 ~~~iYLd~as----~g-~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~ll-g-----a~~~ei~~--   92 (404)
T d1qz9a_          26 EGVIYLDGNS----LG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI-G-----ARDGEVVV--   92 (404)
T ss_dssp             TTCEECCTTT----SC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT-T-----CCTTSEEE--
T ss_pred             CCCEEcCCcc----cc-cCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHh-C-----CCCCcEEE--
Confidence            4555555443    24 66778888777776411111110   000  122457888888888 4     23589999  


Q ss_pred             cCCcccHHHHHHHHH----HhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEE
Q 015435          106 CLSGTGSLRVGAEFL----ARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIV  181 (407)
Q Consensus       106 t~g~t~a~~~~~~~~----~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v  181 (407)
                      |+++|+++..++...    ....+++.|++.+-.+.+........+.++..++..  .....+++.+++.++  ++++++
T Consensus        93 ~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~--~~T~lV  168 (404)
T d1qz9a_          93 TDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYT--LRLVDSPEELPQAID--QDTAVV  168 (404)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCE--EEEESSGGGHHHHCS--TTEEEE
T ss_pred             ecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeecee--ccccccchhHHHhcC--CCceEE
Confidence            999999998764321    123478888888877765554444433444333331  123467889999887  778887


Q ss_pred             EEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435          182 LLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER  261 (407)
Q Consensus       182 ~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  261 (407)
                      .+ +..+|.||+..+   +++|+++|+++|+.+++|.+++..... .  +   +    ...+..++..|.+|.+..+.-.
T Consensus       169 ~i-~~v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~g~~~-~--~---~----~~~~~d~~~~s~~K~~~~~~g~  234 (404)
T d1qz9a_         169 ML-THVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGAVP-V--D---L----HQAGADYAIGCTYKYLNGGPGS  234 (404)
T ss_dssp             EE-ESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C--C---H----HHHTCSEEEECSSSTTCCCTTC
T ss_pred             EE-ecccccccceec---HHHHhccccccccceeEEeeccccccc-c--c---c----ccccceEEEEechhhcccCCce
Confidence            77 899999999876   788888899999999999986544332 2  1   1    1123456777888876533223


Q ss_pred             cceeEEeecChhhHHHHHHHHhh-------------------hhhcccCCCChhHHHHHHHH---hcChhhHHhHHHHHH
Q 015435          262 VGALSIVCKTEDVASRVESQLKL-------------------VIRPMYSSPPIHGASIVATI---LKDSTMYKEWTLELK  319 (407)
Q Consensus       262 ~G~~~~v~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~  319 (407)
                      .|++  +.+ ++..+.+......                   ........++..+.......   +....     ...+.
T Consensus       235 ~g~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~  306 (404)
T d1qz9a_         235 QAFV--WVS-PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTD-----MASLR  306 (404)
T ss_dssp             CCEE--EEC-TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSC-----HHHHH
T ss_pred             EEEE--Eec-hhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhh-----HHHHH
Confidence            4555  333 2211111000000                   00111123333333333222   22221     02222


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCcccccC-----CceeEEecCCCHHHHHHhHhhccEEEc--CCC--eEEecC--CC
Q 015435          320 AMADRIISMRQQLFDALSARGTPGDWSHIIK-----QIGMFTFTGLNSEQVAFMTKEYHIYMT--SDG--RISMAG--LS  388 (407)
Q Consensus       320 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~gi~~~--~gg--Ris~~~--~~  388 (407)
                      +....+......+.+.+.....   +.++.|     .++.+.+...+.+.+.+.|.++||.+.  .+|  |||+++  .+
T Consensus       307 ~~~~~~~~~~~~l~~~~~~~~~---~~i~~p~~~~~r~~~vsf~~~~~~~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt  383 (404)
T d1qz9a_         307 RKSLALTDLFIELVEQRCAAHE---LTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTT  383 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSC---CEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETTTEEEEECCTTTCC
T ss_pred             HHHHHhHHHHHHHHHhhccCCC---EEEECCCCccceeeEEEEecCCHHHHHHHHHHCCCEEeecCCCeEEEECCCCCCC
Confidence            2222222233333333333221   444332     356666655567777777888999763  234  999864  36


Q ss_pred             CCChhHHHHHHHHHHHhh
Q 015435          389 SKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       389 ~e~i~~~~~~l~~~l~~~  406 (407)
                      ++||+++++.|++++++.
T Consensus       384 ~~did~~~~~L~~vl~~~  401 (404)
T d1qz9a_         384 FTEVWDAVQILGEILDRK  401 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            799999999999999864

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.5e-15  Score=139.37  Aligned_cols=279  Identities=14%  Similarity=0.121  Sum_probs=190.6

Q ss_pred             cCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh---
Q 015435           70 EYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT---  144 (407)
Q Consensus        70 ~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~---  144 (407)
                      .|+.  .+....|.+.++++. +.       +..++  ++||+.|+..+  ++..+.+||.|+++...|.+....++   
T Consensus        51 ~Y~R~~nPt~~~le~~la~LE-g~-------~~a~~--~~SGMaAi~~~--l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l  118 (391)
T d1cl1a_          51 FYGRRGTLTHFSLQQAMCELE-GG-------AGCVL--FPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKIL  118 (391)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTG
T ss_pred             EeECCCChhHHHHHHHHHHHh-CC-------ccEEE--eccccceeeeh--hhcccCCCCeEEEecccccchhhhhhhcc
Confidence            4555  334667777888866 42       57878  99999999988  56678899999999999988766554   


Q ss_pred             -hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHH--cCceeeeccccc
Q 015435          145 -LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS--KGLLPFFDSAYQ  221 (407)
Q Consensus       145 -~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~li~D~~y~  221 (407)
                       ..|+++..++.       .|.+++++.+.  ++++++++ -+|.|||..+.+   +++|+++|++  +|+++++|+.++
T Consensus       119 ~~~Gi~~~~~d~-------~d~~~~~~~i~--~~t~~i~~-EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~a  185 (391)
T d1cl1a_         119 SKLGVTTSWFDP-------LIGADIVKHLQ--PNTKIVFL-ESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWA  185 (391)
T ss_dssp             GGGTCEEEEECT-------TCGGGGGGTCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTT
T ss_pred             cccccccccccC-------ccccccccccc--cccceeee-cccCcccccccc---cHHHHHHHHhccCCcEEEEecccc
Confidence             56877777743       36788888777  67788888 899999999875   6777777866  599999999986


Q ss_pred             cccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHH
Q 015435          222 GFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIV  301 (407)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (407)
                      ....-.    +     + + ....+++.|.+|.++..|--+|.+  ++.+++....+..    .........++..+..+
T Consensus       186 tP~~~~----P-----l-~-~GaDivvhS~TKy~~GhsdvlgG~--vv~~~~~~~~~~~----~~~~~G~~~~p~~a~ll  248 (391)
T d1cl1a_         186 AGVLFK----A-----L-D-FGIDVSIQAATKYLVGHSDAMIGT--AVCNARCWEQLRE----NAYLMGQMVDADTAYIT  248 (391)
T ss_dssp             TTTSSC----G-----G-G-GTCSEEEEETTTTTTCSSSCCCEE--EEECTTTHHHHHH----HHHHTTCCCCHHHHHHH
T ss_pred             chhhhc----c-----c-c-cccceEEeecchhccccccccccc--eeccccccccchh----hhhcccccCCchhhhhh
Confidence            544321    1     1 1 234688999999998777666666  3555655444433    22333345666666666


Q ss_pred             HHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc------------------ccCCceeEEec---CC
Q 015435          302 ATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH------------------IIKQIGMFTFT---GL  360 (407)
Q Consensus       302 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~------------------~~~~~~~~~~~---~~  360 (407)
                      ..-++..          ..+.++..++...+.+.|++.+.   +..                  ....+|++.+.   +.
T Consensus       249 ~rgl~TL----------~lR~~~~~~nA~~vA~~L~~hp~---V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~  315 (391)
T d1cl1a_         249 SRGLRTL----------GVRLRQHHESSLKVAEWLAEHPQ---VARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL  315 (391)
T ss_dssp             HHHHTTH----------HHHHHHHHHHHHHHHHHHHTCTT---EEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC
T ss_pred             hccchhH----------HHHHHHHHHHHHHHHHHHHhccc---ccccccccccchhhHHHHhhccCCCCcceeeeecCCC
Confidence            6555543          45556677888899999987642   111                  11134554443   33


Q ss_pred             CHHHHHHhHhhccEEE-cC--C-----------------------C------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          361 NSEQVAFMTKEYHIYM-TS--D-----------------------G------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       361 ~~~~~~~~l~~~gi~~-~~--g-----------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +.+.+.+.++.-.++- .+  |                       |      |+|++-   |+++.+++.|+++|+++
T Consensus       316 ~~e~~~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl---Ed~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         316 NNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL---EDVDDLIADLDAGFARI  390 (391)
T ss_dssp             CHHHHHHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS---SCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCcceEeeCCCCCccceeCCcccccccCCchHhcCCCcCEEEEEecc---CCHHHHHHHHHHHHHhh
Confidence            6666666666544322 11  1                       1      888773   89999999999999864

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.72  E-value=1.5e-16  Score=150.11  Aligned_cols=346  Identities=11%  Similarity=0.041  Sum_probs=193.9

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc-cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK-EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ  105 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~  105 (407)
                      ...++++||+..|....+.| ..++++++++.+++.+ ..... .+ +.....++.+++++....      ..+.+.+  
T Consensus        37 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~-~~~~~~~~-~~~~~~~la~~L~~~~~~------~~~~v~f--  105 (431)
T d1zoda1          37 DADGRAILDFTSGQMSAVLG-HCHPEIVSVIGEYAGK-LDHLFSEM-LSRPVVDLATRLANITPP------GLDRALL--  105 (431)
T ss_dssp             CTTCCEEEETTHHHHTCTTC-BTCHHHHHHHHHHHHH-CCCCCTTC-CCHHHHHHHHHHHHHSCT------TCCEEEE--
T ss_pred             ECCCCEEEEcccCHHhhhhc-CCCHHHHHHHHHHHhh-cccccccc-ccHHHHHHHHHHHHhCCc------ccceeee--
Confidence            44678999999887656677 6678888888888861 11111 12 222233445555554311      1278999  


Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc------------eeeEEEeecCC--C-----CCcC--
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL------------SVKTYRYYDPA--T-----RGLN--  164 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~------------~~~~v~~~~~~--~-----~~~d--  164 (407)
                      +++|++|++.++++.+.....++|+...-+|++........+.            ....++.....  .     ...+  
T Consensus       106 ~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (431)
T d1zoda1         106 LSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLA  185 (431)
T ss_dssp             ESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHH
T ss_pred             cccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhh
Confidence            9999999999999988777778899888888876554432211            11222211000  0     0011  


Q ss_pred             -hhhHHHHHHc-CCC-CcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435          165 -FQGLLEDLRA-APS-GAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA  240 (407)
Q Consensus       165 -~~~l~~~i~~-~~~-~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~  240 (407)
                       .+.+...+.. .++ ..++++-+-..+ .|. .++++.+++|.++|++||+++|+||+..+|...+.   ......+.-
T Consensus       186 ~~~~~~~~~~~~~~~~iAavi~EPi~g~-~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~---~~~~~~~gv  261 (431)
T d1zoda1         186 ELDYAFDLIDRQSSGNLAAFIAEPILSS-GGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQRDGV  261 (431)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEEECSEETT-TTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHHTC
T ss_pred             hHHHHHHHHHHhccccccceeecccccc-CCccCCCHHHHHHHHHHHHhcCceEEecccccccccccc---ccccccCCC
Confidence             2333333321 223 344455332222 344 47899999999999999999999999999877653   222222322


Q ss_pred             cCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh--hhcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435          241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV--IRPMYSSPPIHGASIVATILKDSTMYKEWTLEL  318 (407)
Q Consensus       241 ~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  318 (407)
                       ..++++   ++|.++ .|+.++.+  +.. ++    +.......  ....+.+.+++++.++.+.++-..- +   +..
T Consensus       262 -~PDi~~---~gK~l~-gG~p~~av--~~~-~~----~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~-~---~~~  325 (431)
T d1zoda1         262 -TPDILT---LSKTLG-AGLPLAAI--VTS-AA----IEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR-D---GLV  325 (431)
T ss_dssp             -CCSEEE---ECHHHH-TTSSCEEE--EEC-HH----HHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH-T---THH
T ss_pred             -Ccchhc---cccccc-ccccccee--eee-ec----chhhhhcccccccCCCCCCcchHHHHHHHHHHhhh-h---hhh
Confidence             233333   789998 78888887  455 32    32222221  1234457788888888777653210 0   112


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEe--c--CC-----C--HHHHHHhHhhccEE----EcCC-C--
Q 015435          319 KAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTF--T--GL-----N--SEQVAFMTKEYHIY----MTSD-G--  380 (407)
Q Consensus       319 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~--~~-----~--~~~~~~~l~~~gi~----~~~g-g--  380 (407)
                      ++..+.-....+.+.+.+.+.+.   +..+...|.++.+  .  .-     +  ...+.+.+.++|+.    ..++ +  
T Consensus       326 ~~~~~~g~~l~~~l~~~~~~~~~---i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~  402 (431)
T d1zoda1         326 ARANVMGDRLRRGLLDLMERFDC---IGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGV  402 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT---EEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCE
T ss_pred             HHHHHHHHHHhhhhhhhhhcCCC---eEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCE
Confidence            22222222233333333333332   2223334444432  1  00     1  22333444447764    2332 3  


Q ss_pred             -eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 -RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 -Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                       |++.+- ++++++++++++|.+++++.
T Consensus       403 i~l~Ppl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         403 FRIAPPLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence             554332 58899999999999999874

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.72  E-value=4.6e-16  Score=143.64  Aligned_cols=318  Identities=15%  Similarity=0.063  Sum_probs=187.9

Q ss_pred             cccchhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCc--eEEeecCCcccHHHHHHHHHHhh
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNR--VTTVQCLSGTGSLRVGAEFLARH  123 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~--i~~~~t~g~t~a~~~~~~~~~~~  123 (407)
                      |.|.++.+++.+++.  ....+++++  ..-+++.|+.+++++ +..     +++  +++  |.|+|++++.+  +....
T Consensus         6 pGP~~~~~~V~~A~~--~~~~~~~~~~~~~~~~~~r~~l~~l~-~~~-----~~~~~i~~--t~s~T~~~~~~--~~~l~   73 (361)
T d1m32a_           6 PGPLTTSRTVKEAML--FDSCTWDDDYNIGVVEQIRQQLTALA-TAS-----EGYTSVLL--QGSGSYAVEAV--LGSAL   73 (361)
T ss_dssp             SSSCCCCHHHHHTTC--CCCCTTSHHHHTTTHHHHHHHHHHHH-CSS-----SSEEEEEE--ESCHHHHHHHH--HHHSC
T ss_pred             CCCCCCCHHHHHHhh--hhccCCCcHHHHHHHHHHHHHHHHHh-CCC-----CCCEEEEE--CCCHHHHHHHH--HHHhh
Confidence            556666666666665  222233322  345788999999988 432     243  556  88999999998  35556


Q ss_pred             cCCCeEEecCCCCCC--hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHH
Q 015435          124 YHQLTIYIPQPTWGN--HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWE  201 (407)
Q Consensus       124 ~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~  201 (407)
                      .+++.+++....+..  ........+.....+...  .......+.........+++.++.+ +..+|.||...+   ++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~tG~~~~---i~  147 (361)
T d1m32a_          74 GPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCG--EVARPDVQAIDAILNADPTISHIAM-VHSETTTGMLNP---ID  147 (361)
T ss_dssp             CTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECC--TTSCCCHHHHHHHHHHCTTCCEEEE-ESEETTTTEECC---HH
T ss_pred             hhccccceeeehhhhhhHHHHhhhhhccccccccc--ccCCccchhhHHHHHhccCccceEE-Eeeecccccchh---hh
Confidence            777877776654332  233444556666666552  2222333333322222366777777 778999999665   78


Q ss_pred             HHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc-cCCCcceeEEeecChhhHHH---
Q 015435          202 QIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL-YGERVGALSIVCKTEDVASR---  277 (407)
Q Consensus       202 ~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~r~G~~~~v~~~~~~~~~---  277 (407)
                      +|+++|++||+++++|.+++..... .+         ....+..+++.|..|.++. +|  +|++  ... ++..++   
T Consensus       148 ~i~~~~~~~g~~~~vDa~qs~G~~~-~d---------~~~~~~D~~~~s~~K~l~gp~G--~g~l--~~~-~~~~~~~~~  212 (361)
T d1m32a_         148 EVGALAHRYGKTYIVDAMSSFGGIP-MD---------IAALHIDYLISSANKCIQGVPG--FAFV--IAR-EQKLAACKG  212 (361)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTSC-CC---------TTTTTCSEEEEESSSTTCCCSS--EEEE--EEE-HHHHTTCTT
T ss_pred             hhhhhhcccceeeEeecccccCccc-cc---------ccccccceEEeeecccccCCCC--ceEE--Eec-hhhhhhhcc
Confidence            8888899999999999997644321 21         1223457888899998753 45  5666  333 211110   


Q ss_pred             -----------HHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 015435          278 -----------VESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDW  345 (407)
Q Consensus       278 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  345 (407)
                                 ..............+++.....+....+....     .+ ..+...++.+...+.+.+.++..+.....
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  287 (361)
T d1m32a_         213 HSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELA-----KEGGVAARHQRYQQNQRSLVAGMRALGFNTLL  287 (361)
T ss_dssp             CCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH-----HHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred             ccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHH-----HhcchhhhHHHHHHHHHHHHHHHhhcCCcccC
Confidence                       11111111222334566666665555553211     11 23455566777778888888887732111


Q ss_pred             ccccCCceeEEec-----CCCHHHHHHhHhhccEEEcCCC-------eEEec-CCCCCChhHHHHHHHHHH
Q 015435          346 SHIIKQIGMFTFT-----GLNSEQVAFMTKEYHIYMTSDG-------RISMA-GLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       346 ~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~gg-------Ris~~-~~~~e~i~~~~~~l~~~l  403 (407)
                      .......+...+.     ..+...+...|.++||.+.+|+       ||+.. ..+++|+++++++|+++|
T Consensus       288 ~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         288 DDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             CGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             ChhhcCCcEEEEECCCCCCCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            1101112232222     3455666677777999997763       99853 468899999999999875

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.72  E-value=3.7e-17  Score=154.98  Aligned_cols=272  Identities=10%  Similarity=0.050  Sum_probs=165.0

Q ss_pred             cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEe-ecCCCCCcChhhHHHHHHcC---CCCcEE
Q 015435          106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRY-YDPATRGLNFQGLLEDLRAA---PSGAIV  181 (407)
Q Consensus       106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~i~~~---~~~~~v  181 (407)
                      ..|+++++.+++...+...+++.|+++...|+.+.+.+...|.+++.++. .++..+.+|+++|++++.+.   ..+.++
T Consensus       136 ~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v  215 (434)
T d2z67a1         136 PISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCV  215 (434)
T ss_dssp             SSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEE
Confidence            44444555555322223447899999999999999999999999988864 23445679999999999752   345555


Q ss_pred             EEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435          182 LLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER  261 (407)
Q Consensus       182 ~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  261 (407)
                      ++ .+|++++|.+-   ++++|+++|++||+++++|++|..+...     ..............+++.|++|.++.+ ..
T Consensus       216 ~~-~~~~~~~g~~~---~l~~i~~~~~~~~~~l~vD~a~g~~~~~-----~~~~~~~~~~~~~D~~~~s~hK~l~~~-~g  285 (434)
T d2z67a1         216 LS-TLTFFPPRNSD---DIVEIAKICENYDIPHIINGAYAIQNNY-----YLEKLKKAFKYRVDAVVSSSDKNLLTP-IG  285 (434)
T ss_dssp             EE-ESSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTTTTCHH-----HHHHHHHHHTSCCSEEEEEHHHHHCCC-SS
T ss_pred             Ee-ccCcCCCcccc---CHHHHHHHHHHhCCeEEEeccchhhhhh-----ccccccccccCCcceEEEcCccccccC-CC
Confidence            55 78899999854   5888999999999999999998644321     111111122334567888999988743 33


Q ss_pred             cceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015435          262 VGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT  341 (407)
Q Consensus       262 ~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  341 (407)
                      .|++  .++++++.++    +...........+...+.++...+..        +..+...++..++.+++.+.|+++..
T Consensus       286 ~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~l~~~~~--------~g~~~~~~~~~~~a~~l~~~L~~l~~  351 (434)
T d2z67a1         286 GGLV--YSTDAEFIKE----ISLSYPGRASATPVVNTLVSLLSMGS--------KNYLELVKNQKNSKKLLDELLNDLSK  351 (434)
T ss_dssp             CEEE--EESCHHHHHH----HHTTSCSCBCSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccc--ccCcHHHHHH----HHhhcccccccchHHHHHHHHHHHHH--------hcchhHHHHHHHHHHHHHHHHHHhhh
Confidence            4555  5676654443    22222111112223333333333321        23444555566666777666665310


Q ss_pred             CCCccccc--CCceeEEecCCCHHHHHHhHhhccEEEcCC------------C-------eEEecC-CCCCChhHHHHHH
Q 015435          342 PGDWSHII--KQIGMFTFTGLNSEQVAFMTKEYHIYMTSD------------G-------RISMAG-LSSKTVPHLTDAI  399 (407)
Q Consensus       342 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g------------g-------Ris~~~-~~~e~i~~~~~~l  399 (407)
                      .....+..  ....++...+.+...+...|.+.||.....            +       |++.+. .++|||++++++|
T Consensus       352 ~~g~~ll~~~~~~~~~~~~~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L  431 (434)
T d2z67a1         352 KTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKL  431 (434)
T ss_dssp             HSSCCBCCCCCSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHH
T ss_pred             hcCceecCCCCCceeeeecCCCHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHHH
Confidence            00033322  223334445667777766777788854211            0       565443 4789999999998


Q ss_pred             HH
Q 015435          400 HA  401 (407)
Q Consensus       400 ~~  401 (407)
                      ++
T Consensus       432 ~k  433 (434)
T d2z67a1         432 EK  433 (434)
T ss_dssp             HT
T ss_pred             hc
Confidence            75

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=4.6e-16  Score=144.83  Aligned_cols=327  Identities=14%  Similarity=0.082  Sum_probs=193.8

Q ss_pred             cccchhHHHHHHHHhccccccccCCCCC--CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH-hhc
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLPIV--GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA-RHY  124 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~--g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~-~~~  124 (407)
                      |.|.++.+++.+++.  .....++++..  -..+.++.+.+.+ +.. .+.+.+.|++  |+|+|+++++++.-+. ...
T Consensus         9 PGP~~v~~~V~~Am~--~~~~~hr~~~f~~~~~~~~~~~r~~~-~~~-~~~~~~~i~~--t~sgT~a~~~~~~~l~~~~~   82 (382)
T d2bkwa1           9 PGPIILSGAVQKALD--VPSLGHTSPEFVSIFQRVLKNTRAVF-KSA-AASKSQPFVL--AGSGTLGWDIFASNFILSKA   82 (382)
T ss_dssp             SSSCCCCHHHHHTTS--CCCCCTTSHHHHHHHHHHHHHHHHHT-TCC-GGGTCEEEEE--ESCTTHHHHHHHHHHSCTTC
T ss_pred             CCCCCCCHHHHHHhC--cccCCCCcHHHHHHHHHHHHHHHHHH-hhh-cCCCCeEEEE--eCcHHHHHHHHHHHHHHhcC
Confidence            556666666666664  22233344311  2445556666655 321 1123467888  9999999999953321 125


Q ss_pred             CCCeEEecCCCCCCh--HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHH
Q 015435          125 HQLTIYIPQPTWGNH--PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQ  202 (407)
Q Consensus       125 ~gd~Vi~~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~  202 (407)
                      +||+|++....+...  ....+..|..+..+.. .+.+...+.+.+++.+.+ ++++++++ +..+|.||+..+   +..
T Consensus        83 ~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~v~~-~~~~~~tg~~~~---~~~  156 (382)
T d2bkwa1          83 PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRP-LKIGESVPLELITEKLSQ-NSYGAVTV-THVDTSTAVLSD---LKA  156 (382)
T ss_dssp             SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECC-SSTTSCCCHHHHHHHHHH-SCCSEEEE-ESEETTTTEECC---HHH
T ss_pred             CCCceEEEEechhhhhhhhhccccccccccccc-cCCCCccchhHHHHHhhh-ccchheee-eecccccccccc---chh
Confidence            899999988665543  3344567877776654 255567888888887764 34566666 677999999877   445


Q ss_pred             HHHHHHHc--CceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc-cccCCCcceeEEeecChhhHHHHH
Q 015435          203 IRQLMRSK--GLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASRVE  279 (407)
Q Consensus       203 i~~~~~~~--~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~~~  279 (407)
                      +.+.|+++  ++++++|.+.+... .+.+.         ...+-.+++.|-.|.+ |.+|  +|++  +.. ++..+++.
T Consensus       157 ~~~~~~~~~~~~~~~vDa~qs~g~-~pid~---------~~~giD~~~~s~~K~l~gP~G--~g~l--~vs-~~~~~~~~  221 (382)
T d2bkwa1         157 ISQAIKQTSPETFFVVDAVCSIGC-EEFEF---------DEWGVDFALTASQKAIGAPAG--LSIS--LCS-SRFMDYAL  221 (382)
T ss_dssp             HHHHHHHHCTTSEEEEECTTTTTT-SCCCT---------TTTTCSEEEEESSSTTCCCSC--EEEE--EEC-HHHHHHHT
T ss_pred             hhhhccccccceeeeeeccccccc-ccccc---------cccCeeEEeecccccCcCCCc--hhhh--hcc-HHHHhhhh
Confidence            55557665  59999999854333 22211         2224467888999988 5566  5676  344 44333221


Q ss_pred             HHHhh----------------------hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          280 SQLKL----------------------VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALS  337 (407)
Q Consensus       280 ~~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  337 (407)
                      .....                      ..+....+++.....++..+++...     ....++..++.++.++++++.+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~-----~~g~~~~~~~~~~l~~~l~~~l~  296 (382)
T d2bkwa1         222 NDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEIL-----EEGLHKRWDLHREMSDWFKDSLV  296 (382)
T ss_dssp             CHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHH-----HhhhhhhHHHHHHHHHHHHHHhh
Confidence            11110                      1112233566656666665554221     13356666777788888888887


Q ss_pred             hcCCCCCccccc---CCceeEEecCCCHHHHHHhHhhccEEEcCCC---------eEE-ecCC-CCCChhHHHHHHHHHH
Q 015435          338 ARGTPGDWSHII---KQIGMFTFTGLNSEQVAFMTKEYHIYMTSDG---------RIS-MAGL-SSKTVPHLTDAIHAAV  403 (407)
Q Consensus       338 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~gi~~~~gg---------Ris-~~~~-~~e~i~~~~~~l~~~l  403 (407)
                      .......+....   ...++..+...+.+.+.++|+++||.+.+|.         ||+ |+.. ++|+++.+++.|..+.
T Consensus       297 ~~~~~~~~~~~~~~~~s~~v~~~~~~~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~  376 (382)
T d2bkwa1         297 NGLQLTSVSRYPSNMSAHGLTAVYVADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK  376 (382)
T ss_dssp             TTTCCEESSCSSSTTBCSSCEEEECSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred             hcccccccccCchhccCCcEEEEcCCCHHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence            642110011111   1223333344467778888889999998872         988 6542 4677888887776655


Q ss_pred             Hhh
Q 015435          404 TRM  406 (407)
Q Consensus       404 ~~~  406 (407)
                      +.|
T Consensus       377 ~~L  379 (382)
T d2bkwa1         377 LAL  379 (382)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            544

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.72  E-value=3e-16  Score=141.79  Aligned_cols=284  Identities=19%  Similarity=0.284  Sum_probs=189.5

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH-----hhcCceee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF-----TLAGLSVK  151 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~-----~~~G~~~~  151 (407)
                      ++.+....++.+|+...        +-++..||+.|...+  +.+.++|||+|+..++...+|...-     .....+.+
T Consensus        70 iE~la~~ra~~lF~a~~--------anVqp~SGs~An~av--~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~  139 (405)
T d1kl1a_          70 VEELARERAKQLFGAEH--------ANVQPHSGAQANMAV--YFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFV  139 (405)
T ss_dssp             HHHHHHHHHHHHHCCSE--------EECCCSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEE
T ss_pred             HHHHHHHHHHHHhCCCc--------ceeeccCchHHHHHH--HHHhcCCCCEEEEeecccccccccCccccccceEEEEE
Confidence            44444455555557532        225688889999888  5677999999999997766654322     23356777


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-ccccCCCCCc
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFASGSLDA  230 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~~~~~~~  230 (407)
                      .+++ +++++.+|.+++++.+.+. +.++|++ ..-.+|-     .-+++++.++|++.|.+|+.|.++ ++++..+.-+
T Consensus       140 ~y~~-d~~~~~ID~d~l~~~a~~~-kPklIi~-G~S~y~r-----~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~  211 (405)
T d1kl1a_         140 AYGV-DPETHVIDYDDVREKARLH-RPKLIVA-AASAYPR-----IIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHP  211 (405)
T ss_dssp             EECB-CTTTCSBCHHHHHHHHHHH-CCSEEEE-CCSSCCS-----CCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC
T ss_pred             Eecc-chhcccccHHHHHHHHHhh-CcceEEe-ccccccc-----ccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcC
Confidence            7888 4667889999999998843 3445444 4434443     337889999999999999999997 5565544211


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhh
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTM  310 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (407)
                      ++     + +  ...++..|..|++  +|-|-|.+  ++.     +.+.+++.....+...+.+.....++.++--.+  
T Consensus       212 ~P-----~-~--~aDvvt~tThKtl--rGPrgg~I--~~~-----~~~~~~i~~avfPg~qggp~~~~iAa~Aval~E--  272 (405)
T d1kl1a_         212 NP-----V-P--YAHFVTTTTHKTL--RGPRGGMI--LCQ-----EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE--  272 (405)
T ss_dssp             CS-----T-T--TCSEEEEESSSTT--CCCSCEEE--EEC-----HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--
T ss_pred             Ch-----h-h--hhhheeccccccc--cCCCCceE--Eec-----chhHHHHHhhhCcccccCcchhHHHHHHHHHHH--
Confidence            11     1 1  2346678999987  58898887  566     445566666655555555555555544332111  


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC--CceeEEec-----CCCHHHHHHhHhhccEEEc----CC
Q 015435          311 YKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK--QIGMFTFT-----GLNSEQVAFMTKEYHIYMT----SD  379 (407)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~l~~~gi~~~----~g  379 (407)
                        .+....+...+++.++.+.|.+.|.+.|    +.+...  ..- .+++     +++...+.+.|++.||.+.    |+
T Consensus       273 --a~~~~fk~Ya~qvv~NAkaLa~~L~~~G----~~vv~ggTd~H-~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~  345 (405)
T d1kl1a_         273 --ALQDDFKAYAKRVVDNAKRLASALQNEG----FTLVSGGTDNH-LLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPY  345 (405)
T ss_dssp             --HHSHHHHHHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSS-EEEEECGGGTCCHHHHHHHHHHHTEECEECCCTT
T ss_pred             --HhChHHHHHHHHHHHHHHHHHHHHhcCC----ceeecCCCccc-eeeccccccCCcHHHHHHHHHHcCeEEcCCcCCC
Confidence              2223456667778889999999999998    565532  222 2333     5577888889999999885    22


Q ss_pred             ---------C-eEEec-----CCCCCChhHHHHHHHHHHH
Q 015435          380 ---------G-RISMA-----GLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       380 ---------g-Ris~~-----~~~~e~i~~~~~~l~~~l~  404 (407)
                               | ||...     +..++|++++.+.|.++++
T Consensus       346 d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~  385 (405)
T d1kl1a_         346 DPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK  385 (405)
T ss_dssp             CSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence                     3 88643     2577899999999998885

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=2.7e-16  Score=143.84  Aligned_cols=311  Identities=14%  Similarity=0.108  Sum_probs=189.3

Q ss_pred             cccchhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH  125 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~  125 (407)
                      |.|.++.+++.+++.  .....++++  ..-+.+.++.+++.+ +..     .+.+++  +.|||.+++++  +...+.+
T Consensus         6 PGP~~v~~~V~~am~--~~~~~hr~~~f~~i~~~~~~~l~~ll-~~~-----~~~i~~--~gsgT~a~e~~--~~nl~~~   73 (348)
T d1iuga_           6 PGPVRLHPKALEALA--RPQLHHRTEAAREVFLKARGLLREAF-RTE-----GEVLIL--TGSGTLAMEAL--VKNLFAP   73 (348)
T ss_dssp             SSSCCCCHHHHHHHH--SCCCCTTSHHHHHHHHHHHHHHHHHH-TCS-----SEEEEE--ESCHHHHHHHH--HHHHCCT
T ss_pred             CCCCCCCHHHHHHhc--CCCCCCCCHHHHHHHHHHHHHHHHHh-CCC-----CCEEEE--eCchHHHHHHH--HHhcccc
Confidence            455555566666665  222232332  122566777777777 431     245666  99999999999  4666889


Q ss_pred             CCeEEecCCCCC--ChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435          126 QLTIYIPQPTWG--NHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI  203 (407)
Q Consensus       126 gd~Vi~~~p~y~--~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i  203 (407)
                      ||+|++....+.  .+...++.+|.++..++.  +.+..++++++.+     ++.+.+++ ++..+.||+..+   +++|
T Consensus        74 g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~--~~g~~~~~~~~~~-----~~~~~v~~-~h~eTstG~~~~---i~~i  142 (348)
T d1iuga_          74 GERVLVPVYGKFSERFYEIALEAGLVVERLDY--PYGDTPRPEDVAK-----EGYAGLLL-VHSETSTGALAD---LPAL  142 (348)
T ss_dssp             TCEEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCTTTSCC-----SSCSEEEE-ESEETTTTEECC---HHHH
T ss_pred             cccceeecchHHHHHHHHHHHhcCcccccccc--cCCCccccccccc-----cCCCeeEE-Eecchhhhhhcc---HHHH
Confidence            999988876643  345566788988888877  5555566555432     45666666 666888999776   5666


Q ss_pred             HHHHHHcC--ceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc-cccCCCcceeEEeecChhhHHHH--
Q 015435          204 RQLMRSKG--LLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASRV--  278 (407)
Q Consensus       204 ~~~~~~~~--~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~~--  278 (407)
                      .++|++++  .++++|.+.+ ++..+.+.+         ...-.+++.|-.|.+ |.||  +|.+  +.+ ++..+++  
T Consensus       143 ~~~~~~~~~~~l~~vDavss-~g~~~i~~d---------~~~iD~~~~~sqK~l~gppG--~~~v--~~s-~~~le~~~~  207 (348)
T d1iuga_         143 ARAFKEKNPEGLVGADMVTS-LLVGEVALE---------AMGVDAAASGSQKGLMCPPG--LGFV--ALS-PRALERLKP  207 (348)
T ss_dssp             HHHHHHHCTTCEEEEECTTT-BTTBCCCSG---------GGTCSEEEEESSSTTCCCSC--EEEE--EEC-HHHHHTCCC
T ss_pred             HHHHHhhhccceeechhhhc-ccccccccc---------cccCCEEEeccccceecCCc--eeee--eec-hHHHhhhcc
Confidence            66798875  7888899744 333223222         123457778889988 6676  4666  343 3332221  


Q ss_pred             -------HHHHhhh-hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-
Q 015435          279 -------ESQLKLV-IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII-  349 (407)
Q Consensus       279 -------~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-  349 (407)
                             ...+... ......+++.....++..+|+.  +.+++    .+..++.+..++.+.+.++..|    +.... 
T Consensus       208 ~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~g----l~~~~~  277 (348)
T d1iuga_         208 RGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEE--VLPRL----EEHLALKAWQNALLYGVGEEGG----LRPVPK  277 (348)
T ss_dssp             CSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--HGGGH----HHHHHHHHHHHHHHHHHHHHTT----CEESCS
T ss_pred             cccccchhhhhhhhccCcccccccchHHHHHHHHHHH--HHHHH----hHHHHHHHHHHHHHhhhhhhhh----hccChh
Confidence                   1111111 1123346666677777767652  12222    2223333344455666665656    33221 


Q ss_pred             ---CCceeEEec-CCCHHHHHHhHhhccEEEcCCC--------eEEe-cCCCCCChhHHHHHHHHHHHhh
Q 015435          350 ---KQIGMFTFT-GLNSEQVAFMTKEYHIYMTSDG--------RISM-AGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       350 ---~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~gg--------Ris~-~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                         +.-..+.+. +++.+.+...|+++||.+.+|.        ||+. +..+.+|++++++.|+++|+++
T Consensus       278 ~~s~~v~~~~~P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         278 RFSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             SBCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCeEEEEECCCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence               111122222 5677777778888999998872        8864 4468899999999999999875

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.71  E-value=6.9e-15  Score=135.05  Aligned_cols=300  Identities=15%  Similarity=0.126  Sum_probs=198.8

Q ss_pred             cchhHHHHHHHHhccccccccCCCC--CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC
Q 015435           50 VLNVVRKAEQLLVNDQSRVKEYLPI--VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL  127 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~y~~~--~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd  127 (407)
                      ..+..+...+.+. .....+.|+..  +....|.+.++++. +.       +..+.  ++||+.|+..+  ++..+.+||
T Consensus        33 ~~~~~~~~~~~~~-~~~~~~~YsR~~nPT~~~le~~la~LE-g~-------~~a~~--~sSGmaAi~~~--~l~l~~~gd   99 (394)
T d1e5ea_          33 VFDNCQQGGNRFA-GQESGYIYTRLGNPTVSNLEGKIAFLE-KT-------EACVA--TSSGMGAIAAT--VLTILKAGD   99 (394)
T ss_dssp             CCSSHHHHHHHHT-TSSCSCCBTTTCCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHH--HHHHCCTTC
T ss_pred             eeCCHHHHHHhhc-CCcCCceecCCCCHHHHHHHHHHHHHh-CC-------cceee--eccchHHHHHH--HHhhccccc
Confidence            4445555555554 22223446552  33566777888766 42       56777  99999999988  467788999


Q ss_pred             eEEecCCCCCChHHH----HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435          128 TIYIPQPTWGNHPKV----FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI  203 (407)
Q Consensus       128 ~Vi~~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i  203 (407)
                      .|++++..|.+....    +...|+.+..++.       .|++++++.++  +++++|++ -+|.|||..+.+   ++++
T Consensus       100 ~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~-------~d~~~~~~~i~--~~t~lv~~-Etp~NP~l~v~D---i~~~  166 (394)
T d1e5ea_         100 HLISDECLYGCTHALFEHALTKFGIQVDFINT-------AIPGEVKKHMK--PNTKIVYF-ETPANPTLKIID---MERV  166 (394)
T ss_dssp             EEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-------TSTTHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHH
T ss_pred             ccccccceeehhhHhHHHHhhccceeeeccCC-------CCHHHHHHhhc--ccccEEEE-eccCCcceeeeh---hhhh
Confidence            999999999776554    4478888888854       36788999887  77888888 889999999775   6677


Q ss_pred             HHHHH-HcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH
Q 015435          204 RQLMR-SKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL  282 (407)
Q Consensus       204 ~~~~~-~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~  282 (407)
                      ++.++ ++|+++|+|..++....-.    +     +  ...-.|++.|.+|.++..+.=+|.+  ++.+.+.....  +.
T Consensus       167 ~~~~~~~~g~~vvvDnT~atP~~~~----P-----l--~~GaDiVvhS~TKy~~GhsDv~~G~--v~~~~~~~~~~--~~  231 (394)
T d1e5ea_         167 CKDAHSQEGVLVIADNTFCSPMITN----P-----V--DFGVDVVVHSATKYINGHTDVVAGL--ICGKADLLQQI--RM  231 (394)
T ss_dssp             HHHHHTSTTCEEEEECTTTCTTTCC----G-----G--GGTCSEEEEETTTTTTCSSCCCCEE--EEECHHHHHHH--HH
T ss_pred             hhccccccCeEEEecCcccCcccCC----c-----h--hcCCCEEEechhhhcCCCccccccc--ccchhhHHHHH--HH
Confidence            77665 5789999999986444321    1     1  1234689999999998777766665  34444322221  12


Q ss_pred             hhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-cc-------------
Q 015435          283 KLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-HI-------------  348 (407)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~-------------  348 (407)
                      ...+.......++.....+..-++..          ..+.++..++...+.++|++.+.   ++ +.             
T Consensus       232 ~~~~~~~G~~lsp~~a~ll~rgl~TL----------~lRm~r~~~nA~~lA~~L~~hp~---V~~V~yPgl~s~p~~~~~  298 (394)
T d1e5ea_         232 VGIKDITGSVISPHDAWLITRGLSTL----------NIRMKAESENAMKVAEYLKSHPA---VEKVYYPGFEDHEGHDIA  298 (394)
T ss_dssp             TCCCCCCCCCCCHHHHHHHHHHHTTH----------HHHHHHHHHHHHHHHHHHHTCTT---EEEEECTTCSSSTTHHHH
T ss_pred             HHHHHhhCCCCChHHHHHHHhhchhH----------HHHHHHHHHHHHHHHHHHhhcCC---ccEEeCCCcccccchhhh
Confidence            22222333456667777777666644          45557777888999999987753   21 11             


Q ss_pred             ----cCCceeEEecCC-CHHHHHHhHhhccEEE-cC--C-------------------------C------eEEecCCCC
Q 015435          349 ----IKQIGMFTFTGL-NSEQVAFMTKEYHIYM-TS--D-------------------------G------RISMAGLSS  389 (407)
Q Consensus       349 ----~~~~~~~~~~~~-~~~~~~~~l~~~gi~~-~~--g-------------------------g------Ris~~~~~~  389 (407)
                          ...|+++.|.-. +.+.+.++++...++- .+  |                         |      |||++-   
T Consensus       299 ~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGl---  375 (394)
T d1e5ea_         299 KKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI---  375 (394)
T ss_dssp             HHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS---
T ss_pred             hcccccCCCeeeeeccCCHHHHHHHHHhCCccceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEecc---
Confidence                123677766533 3455666776655422 11  1                         1      888773   


Q ss_pred             CChhHHHHHHHHHHHhh
Q 015435          390 KTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~~  406 (407)
                      |+.+.+++-|.++|+.+
T Consensus       376 Ed~eDLi~Dl~qAl~~l  392 (394)
T d1e5ea_         376 EDADELIADFKQGLDAL  392 (394)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            89999999999998764

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.70  E-value=1.6e-15  Score=136.46  Aligned_cols=275  Identities=18%  Similarity=0.170  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCceeeEEE
Q 015435           79 DFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGLSVKTYR  154 (407)
Q Consensus        79 ~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~~~~v~  154 (407)
                      .|.+.++++. +.       +..++  ++||+.|+..+  ++..+++||.|+++...|.+....+    +..|+++..++
T Consensus         2 aLE~~la~Le-g~-------~~a~~--~sSGMaAi~~~--l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d   69 (331)
T d1pffa_           2 ALEGKIAKLE-HA-------EACAA--TASGMGAIAAS--VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID   69 (331)
T ss_dssp             HHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHh-CC-------CeEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEec
Confidence            3677888877 42       56777  99999999887  4677899999999999998765544    47899888875


Q ss_pred             eecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHH-HHcCceeeeccccccccCCCCCchhH
Q 015435          155 YYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLM-RSKGLLPFFDSAYQGFASGSLDADAQ  233 (407)
Q Consensus       155 ~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~-~~~~~~li~D~~y~~~~~~~~~~~~~  233 (407)
                      .       .|++.+++++.  ++++++++ -+|.||+..+.+   ++++++++ +++|+++|+|..+.....-       
T Consensus        70 ~-------~d~~~~~~~i~--~~t~~i~~-Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~-------  129 (331)
T d1pffa_          70 M-------AVPGNIEKHLK--PNTRIVYF-ETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT-------  129 (331)
T ss_dssp             T-------TSTTHHHHTCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC-------
T ss_pred             c-------cchhhHhhhcc--cccceeee-eccccccccccc---chhhhhhhhcccCceEEeeccccccccc-------
Confidence            4       37788988887  67888888 889999999775   66666654 6789999999997533321       


Q ss_pred             HHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHh
Q 015435          234 SVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKE  313 (407)
Q Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  313 (407)
                        .  +-...-.|++.|.+|.++..|.-+|.+  ++.+++.....  +............++..+..+..-+        
T Consensus       130 --~--pl~~GaDiVv~S~TKy~~Gh~d~~~G~--v~~~~~~~~~~--~~~~~~~~~G~~l~p~~a~ll~rgl--------  193 (331)
T d1pffa_         130 --N--PLDLGVDIVVHSATKYINGHTDVVAGL--VCSRADIIAKV--KSQGIKDITGAIISPHDAWLITRGT--------  193 (331)
T ss_dssp             --C--GGGGTCSEEEEETTTTTSSSSSCCCEE--EEECHHHHHHH--HHTCCCCCCCCCCCHHHHHHHHHHH--------
T ss_pred             --c--ccccCCCEEEecchhhcCCCCcccccc--ccccccchhhh--hhhhhhhccCCCCCHHHHHHHHHHH--------
Confidence              0  111234689999999998777777776  34444322211  1111222223345555555554443        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---------------ccCCceeEEecCCCHHHHHHhHhhccEEE-c
Q 015435          314 WTLELKAMADRIISMRQQLFDALSARGTPGDWSH---------------IIKQIGMFTFTGLNSEQVAFMTKEYHIYM-T  377 (407)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~~~gi~~-~  377 (407)
                        +.+..+.++..++...+.+.|++.+.-..+.+               ....|+++.+.--+.+.+.+++++..++- .
T Consensus       194 --~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~d~l~lf~~~  271 (331)
T d1pffa_         194 --LTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLA  271 (331)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEEC
T ss_pred             --HHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHHHhCCcceec
Confidence              33556667788889999999988753100111               11246666655335566666766654322 1


Q ss_pred             C--C-------------------------C------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435          378 S--D-------------------------G------RISMAGLSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       378 ~--g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~~  406 (407)
                      +  |                         |      |+|++-   |+.+.+++.|+++|+.+
T Consensus       272 ~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGl---E~~~DLi~Dl~~AL~~i  330 (331)
T d1pffa_         272 VSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGC---ENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             SSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHTC
T ss_pred             ccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeee---CCHHHHHHHHHHHHHHh
Confidence            1  2                         1      888773   89999999999998753

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=7.6e-16  Score=146.29  Aligned_cols=166  Identities=11%  Similarity=-0.018  Sum_probs=114.4

Q ss_pred             CceEEeecCCcccHHHHHHHHHH-h-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEee-cCCCCCcChhhHHHHHHcC
Q 015435           99 NRVTTVQCLSGTGSLRVGAEFLA-R-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY-DPATRGLNFQGLLEDLRAA  175 (407)
Q Consensus        99 ~~i~~~~t~g~t~a~~~~~~~~~-~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~  175 (407)
                      ....+  |+|+|++...+..... . ..+++.|+++...|.....++..+|.+++.|+.. +++++.+|+++|++++.+.
T Consensus       113 ~~~~~--~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~  190 (445)
T d3bc8a1         113 ASCFV--VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQEL  190 (445)
T ss_dssp             CEEEE--ESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHH
T ss_pred             cCccc--cccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhc
Confidence            45666  8888866555431211 1 2367899999999999999999999999888642 3456789999999999742


Q ss_pred             --CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCc
Q 015435          176 --PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAK  253 (407)
Q Consensus       176 --~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  253 (407)
                        +++.++++ ..|+|++|.+-   ++++|+++|++||+++++|++|..+...    ............+..++..|.+|
T Consensus       191 ~~~~~~~v~~-~~~~~~~G~~~---~~~~i~~~~~~~~~~l~vD~a~~~~~~~----~~~~~~~~~~~~~vd~~~~s~hK  262 (445)
T d3bc8a1         191 GPEHILCLHS-TTACFAPRVPD---RLEELAVICANYDIPHVVNNAYGLQSSK----CMHLIQQGARVGRIDAFVQSLDK  262 (445)
T ss_dssp             CGGGEEEEEE-ESSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTTTTCHH----HHHHHHHHHHHSCCCEEEEEHHH
T ss_pred             cccCeEEEEE-eCCCCCCeeeh---hHHHHHHHHHHhCCcEEEEccchhhhhh----ccccchhccCcCCcceEEecCcc
Confidence              23444444 88999999954   5888999999999999999998754421    01111111233445577889999


Q ss_pred             cccccCCCcceeEEeecChhhHHH
Q 015435          254 NMGLYGERVGALSIVCKTEDVASR  277 (407)
Q Consensus       254 ~~~~~G~r~G~~~~v~~~~~~~~~  277 (407)
                      .++.|. ..|++  +..+++..+.
T Consensus       263 ~~~~p~-g~~~l--~~~~~~~~~~  283 (445)
T d3bc8a1         263 NFMVPV-GGAII--AGFNEPFIQD  283 (445)
T ss_dssp             HHSCCS-SCEEE--EESCHHHHHH
T ss_pred             ccccCC-CCcee--eeCChHHHHH
Confidence            887443 34566  5776654443

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=7.1e-15  Score=135.49  Aligned_cols=301  Identities=17%  Similarity=0.113  Sum_probs=192.1

Q ss_pred             hhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeE
Q 015435           52 NVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTI  129 (407)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~V  129 (407)
                      +..+....... .......|+.  .+....|.+.++++. +.       +..++  ++||+.|+..+  ++..+.+||.|
T Consensus        34 ~~~~~~~~~~~-~~~~~~~YsR~~nPT~~~LE~~la~LE-~~-------~~a~~--~~SGmaAi~~~--~~~l~~~gd~i  100 (421)
T d2ctza1          34 KSPEHAANLFA-LKEFGNIYSRIMNPTVDVLEKRLAALE-GG-------KAALA--TASGHAAQFLA--LTTLAQAGDNI  100 (421)
T ss_dssp             SCHHHHHHHHT-TTTGGGSCBTTBCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHH--HHHHCCTTCEE
T ss_pred             CCHHHHHHhhc-CCcCCceecCCCCHHHHHHHHHHHHHh-CC-------CeEEE--ecChHHHHHHH--HHhhcccccce
Confidence            33444444443 2222334655  233666777788877 32       56777  99999999888  56778899999


Q ss_pred             EecCCCCCChHHHHh----hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHH
Q 015435          130 YIPQPTWGNHPKVFT----LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQ  205 (407)
Q Consensus       130 i~~~p~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~  205 (407)
                      ++++..|.+....++    ..|+.+..++..      -+.+..++.+.  +++++|++ -+|.|||..+.   |+++|++
T Consensus       101 l~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~------~~~~~~~~~~~--~~t~li~~-EtpsNP~l~v~---Di~~i~~  168 (421)
T d2ctza1         101 VSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE------ERPEEFLALTD--EKTRAWWV-ESIGNPALNIP---DLEALAQ  168 (421)
T ss_dssp             EECSCCCHHHHHHHHTHHHHTTCEEEECCTT------CCHHHHHHHCC--TTEEEEEE-ESSCTTTCCCC---CHHHHHH
T ss_pred             eecCCcCCchhHHHHHHHhhccccceecccc------cCcchhccccC--CCceEEEE-cCCCcceeEec---chHHHHH
Confidence            999999987766555    678888777431      13344455555  67888888 89999999976   5888888


Q ss_pred             HHHHcCceeeeccccc--cccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChh----------
Q 015435          206 LMRSKGLLPFFDSAYQ--GFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTED----------  273 (407)
Q Consensus       206 ~~~~~~~~li~D~~y~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~----------  273 (407)
                      +|+++|+++|+|+.++  .+...+            -.....|++.|.+|.++..|.-+|.++ +..+..          
T Consensus       169 iA~~~g~~~vvDnT~a~tP~~~~P------------l~~GaDiVvhS~TKyl~GHsD~l~G~v-v~~~~~~~~~~r~~~~  235 (421)
T d2ctza1         169 AAREKGVALIVDNTFGMGGYLLRP------------LAWGAALVTHSLTKWVGGHGAVIAGAI-VDGGNFPWEGGRYPLL  235 (421)
T ss_dssp             HHHHHTCEEEEECGGGGGGTSCCG------------GGGTCSEEEEETTTTTTCSSCCCCEEE-EECSCSCCTTTTCHHH
T ss_pred             HHHhcCCceEecccccccceeccc------------cccCCcEEEEechhhccCCCCeEEEEE-EcCCcchhhhcccccc
Confidence            8999999999999985  233221            112356999999999998888787773 222211          


Q ss_pred             -----------hHHH------HHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435          274 -----------VASR------VESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL  336 (407)
Q Consensus       274 -----------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  336 (407)
                                 ..+.      +.+......+......++..+..+..-|+..          ..+.++..++...+.+.|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL----------~lRm~~~~~nA~~vA~~L  305 (421)
T d2ctza1         236 TEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETL----------SLRAERHVENTLHLAHWL  305 (421)
T ss_dssp             HSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTH----------HHHHHHHHHHHHHHHHHH
T ss_pred             cCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcch----------hhHHHHHHHHHHHHHhhh
Confidence                       0011      1111112222334466777777777666654          345566777888899999


Q ss_pred             HhcCC------CCCcc---------ccc-CCceeEEec-CCCHHHHHHhHhhccEEE---cCC-----------------
Q 015435          337 SARGT------PGDWS---------HII-KQIGMFTFT-GLNSEQVAFMTKEYHIYM---TSD-----------------  379 (407)
Q Consensus       337 ~~~~~------~~~~~---------~~~-~~~~~~~~~-~~~~~~~~~~l~~~gi~~---~~g-----------------  379 (407)
                      ++.+.      |..-+         ... ..|+++.|. .-+.+.+.++++.-.++-   .=|                 
T Consensus       306 ~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~  385 (421)
T d2ctza1         306 LEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQL  385 (421)
T ss_dssp             HTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTS
T ss_pred             ccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHcCCcCeeccccccccceeeCcccccchhC
Confidence            87652      11000         001 135566654 334555666666544422   111                 


Q ss_pred             --------C------eEEecCCCCCChhHHHHHHHHHH
Q 015435          380 --------G------RISMAGLSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       380 --------g------Ris~~~~~~e~i~~~~~~l~~~l  403 (407)
                              |      |+|++-   |+.+.+++-|.++|
T Consensus       386 ~~e~r~~~GI~~~liRlSvGl---Ed~eDLi~DL~qAL  420 (421)
T d2ctza1         386 SPEEQAQAGVSPEMVRLSVGL---EHVEDLKAELKEAL  420 (421)
T ss_dssp             CHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHT
T ss_pred             CHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHhc
Confidence                    1      888773   88999999988875

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=6.7e-16  Score=140.20  Aligned_cols=286  Identities=16%  Similarity=0.230  Sum_probs=184.5

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-----hcCceee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-----LAGLSVK  151 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-----~~G~~~~  151 (407)
                      ++.+....++.+|+...        +-++..||+.|+..+  +.+.+.|||+|+..++...++...-.     ....+.+
T Consensus        73 iE~la~~ra~~lF~a~~--------anVqp~SGs~AN~av--~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~  142 (416)
T d1dfoa_          73 VEQLAIDRAKELFGADY--------ANVQPHSGSQANFAV--YTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIV  142 (416)
T ss_dssp             HHHHHHHHHHHHHTCSE--------EECCCSSHHHHHHHH--HHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEE
T ss_pred             HHHHHHHHHHHHhCCCc--------ceeecccCccHHHHH--HHHhcCCCCeeeeccccccccccccccccccCceEEEE
Confidence            44445555555556532        225678889999888  56779999999999988877755332     2234666


Q ss_pred             EEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-ccccCCCCCc
Q 015435          152 TYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFASGSLDA  230 (407)
Q Consensus       152 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~~~~~~~  230 (407)
                      .++.  +.++.+|.+++++...+. +.++|++ ..-.+|-     .-+++++.++|++.|.+|++|.++ ++++..+.-+
T Consensus       143 ~y~~--d~~~~IDyd~l~~~a~~~-kPklIi~-G~S~y~r-----~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~  213 (416)
T d1dfoa_         143 PYGI--DATGHIDYADLEKQAKEH-KPKMIIG-GFSAYSG-----VVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYP  213 (416)
T ss_dssp             EECB--CSSSSBCHHHHHHHHHHH-CCSEEEE-ECSSCCS-----CCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC
T ss_pred             eccc--CCccCccHHHHHHHHHHh-ccceEEe-ccccccc-----ccCHHHHHHHHHhcCceEEcchhhhhcceeccccC
Confidence            6666  235679999999988743 3455555 4323332     336888999999999999999997 4444433211


Q ss_pred             hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHH-hcChh
Q 015435          231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI-LKDST  309 (407)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~  309 (407)
                      ++     + +  ...++.+|.+|++  +|.|-|.+  +++...  +.+.+++.....+...+.+.....++.++ +.. .
T Consensus       214 sP-----~-~--~aDvvt~tThKtl--rGPrggiI--~~~~~~--~~~~~~i~~avfPg~qggp~~~~iaa~Aval~E-a  278 (416)
T d1dfoa_         214 NP-----V-P--HAHVVTTTTHKTL--AGPRGGLI--LAKGGS--EELYKKLNSAVFPGGQGGPLMHVIAGKAVALKE-A  278 (416)
T ss_dssp             CC-----T-T--TSSEEEEESSSTT--CCCSCEEE--EESSCC--HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH-T
T ss_pred             Cc-----c-c--ccceeeeehhhcc--cCCCceEE--Eeccch--HhHHHHHHhhhCcccccCccHHHHHHHHHHHHH-H
Confidence            10     1 1  1248889999987  58888888  565322  23444555555444444444444443332 221 1


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC--CceeEEec-----CCCHHHHHHhHhhccEEEc----C
Q 015435          310 MYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK--QIGMFTFT-----GLNSEQVAFMTKEYHIYMT----S  378 (407)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~l~~~gi~~~----~  378 (407)
                      +    ....+...+++.++.+.|.+.|.+.|    +.+...  ..-+ +++     +++...+...|++.||.+.    |
T Consensus       279 ~----~~~fk~Y~~qvv~NA~~La~~L~~~G----~~iv~ggTdnHl-vlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP  349 (416)
T d1dfoa_         279 M----EPEFKTYQQQVAKNAKAMVEVFLERG----YKVVSGGTDNHL-FLVDLVDKNLTGKEADAALGRANITVNKNSVP  349 (416)
T ss_dssp             T----SHHHHHHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSE-EEEECGGGTCCHHHHHHHHHHTTEECEECCCT
T ss_pred             c----CHHHHHHHHHHHHHHHHHHHHHHhCC----cccccCCCCCce-eEEEecccCCCHHHHHHHHHHcCeEEeCCcCC
Confidence            1    12345666777889999999999998    565532  2222 333     5578889999999999874    2


Q ss_pred             C---------C-eEEec-----CCCCCChhHHHHHHHHHHHh
Q 015435          379 D---------G-RISMA-----GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       379 g---------g-Ris~~-----~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +         | ||...     +..++|++++.+.|.++++.
T Consensus       350 ~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~  391 (416)
T d1dfoa_         350 NDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS  391 (416)
T ss_dssp             TCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            2         3 88643     25678999999999988864

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.67  E-value=3.2e-16  Score=148.73  Aligned_cols=343  Identities=10%  Similarity=0.032  Sum_probs=190.6

Q ss_pred             hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc--CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435           27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE--YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV  104 (407)
Q Consensus        27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~  104 (407)
                      ...++++|||..|....+.| ..++++++++.+++.  .....+  .........+.+.+++.+......  ..+.+++ 
T Consensus        49 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~--~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~--~~~~v~f-  122 (461)
T d1ohwa_          49 DVDGNRMLDLYSQISSIPIG-YSHPALVKLVQQPQN--VSTFINRPALGILPPENFVEKLRESLLSVAPK--GMSQLIT-  122 (461)
T ss_dssp             BTTSCEEEESSHHHHTCSSC-BTCHHHHHHHHCGGG--HHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCT--TCCEEEE-
T ss_pred             ECCCCEEEEcccCHHHHhhc-CCcHHHHHHHHHHHh--hhhhcccccccccchHHHHHHHHHHHHhhhcc--Ccceeee-
Confidence            45678999999887655667 556677776665553  111111  111122234566677765332111  1368999 


Q ss_pred             ecCCcccHHHHHHHHHHhhc--------------------------CCCeEEecCCCCCChHHHHhhc-Cc---------
Q 015435          105 QCLSGTGSLRVGAEFLARHY--------------------------HQLTIYIPQPTWGNHPKVFTLA-GL---------  148 (407)
Q Consensus       105 ~t~g~t~a~~~~~~~~~~~~--------------------------~gd~Vi~~~p~y~~~~~~~~~~-G~---------  148 (407)
                       +++|++|++.++++.....                          +...|+...-+|++........ |-         
T Consensus       123 -~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~  201 (461)
T d1ohwa_         123 -MACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIP  201 (461)
T ss_dssp             -ESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCC
T ss_pred             -ecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCccccccccc
Confidence             9999999999988765431                          2236888888888764433322 11         


Q ss_pred             --eeeEEEeecCCCCC-------------cChhhHHHHHH---cCCCC-cEEEEecCCCCCCC-CCCCHHHHHHHHHHHH
Q 015435          149 --SVKTYRYYDPATRG-------------LNFQGLLEDLR---AAPSG-AIVLLHACAHNPTG-VDPTLEQWEQIRQLMR  208 (407)
Q Consensus       149 --~~~~v~~~~~~~~~-------------~d~~~l~~~i~---~~~~~-~~v~i~~~p~NPtG-~~~~~~~l~~i~~~~~  208 (407)
                        .....+.. .....             .+.+++++.+.   +.+.. .++++ -.-+...| ..++++.+++|.++|+
T Consensus       202 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAaviv-EPi~g~~G~~~~~~~fl~~lr~lc~  279 (461)
T d1ohwa_         202 SFDWPIAPFP-RLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIV-EPIQSEGGDNHASDDFFRKLRDISR  279 (461)
T ss_dssp             CCCCCEECCC-CCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE-CSSBCTTTCBCCCHHHHHHHHHHHH
T ss_pred             ccCCcccccc-cccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeee-ccccccccccCchhhHHHHHHHHHH
Confidence              11111110 00000             12344444432   23333 44555 33333344 4488999999999999


Q ss_pred             HcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhc
Q 015435          209 SKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRP  288 (407)
Q Consensus       209 ~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~  288 (407)
                      +||++||+||+..+|+..|.   .+....+.-.....++  .++|.++.     |+.  ... ..    + .........
T Consensus       280 ~~gillI~DEV~tG~gRtG~---~~~~e~~gi~~~PDiv--~~gK~l~~-----g~~--~~~-~~----~-~~~~~~~~~  341 (461)
T d1ohwa_         280 KHGCAFLVDEVQTGGGSTGK---FWAHEHWGLDDPADVM--TFSKKMMT-----GGF--FHK-EE----F-RPNAPYRIF  341 (461)
T ss_dssp             HTTCEEEEECTTTCSSTTSS---SSGGGGGCCSSCCSEE--EECGGGSS-----EEE--EEC-GG----G-SCSSTTSSC
T ss_pred             hhCcceeccccccccccccc---cccccccccccCchhh--hhhhcccc-----ccc--ccc-cc----c-ccccccccc
Confidence            99999999999999987652   2222222111112233  47898762     333  122 11    1 111112223


Q ss_pred             ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcccccCCceeEEecCC-CH---
Q 015435          289 MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG--TPGDWSHIIKQIGMFTFTGL-NS---  362 (407)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~-~~---  362 (407)
                      .+++.+++++.++.+.|+-..        -+.+.++.+++.+++.+.|+++.  .+..+.-+...|.++. +.+ +.   
T Consensus       342 ~T~~g~p~~~aaa~a~l~~i~--------~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl~~~-ie~~~~~~~  412 (461)
T d1ohwa_         342 NTWLGDPSKNLLLAEVINIIK--------REDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCS-FDTPDESIR  412 (461)
T ss_dssp             CSCSSCHHHHHHHHHHHHHHH--------HTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEE-EECSSHHHH
T ss_pred             cccccccccchhhcccchhhh--------hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeEEEE-EEcCCHHHH
Confidence            445677788888887776321        12344556666667777666542  1111222233444443 333 32   


Q ss_pred             HHHHHhHhhccEEEcCCC----eEEec-CCCCCChhHHHHHHHHHHHh
Q 015435          363 EQVAFMTKEYHIYMTSDG----RISMA-GLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       363 ~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~~~~~~l~~~l~~  405 (407)
                      +.+...+.++|+.+.+.|    ||... .+++++++.++++|.++|++
T Consensus       413 ~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         413 NKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             HHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence            234445555899998854    55432 25889999999999999976

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1.4e-14  Score=132.87  Aligned_cols=281  Identities=16%  Similarity=0.167  Sum_probs=181.6

Q ss_pred             ccCCCC--CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh--
Q 015435           69 KEYLPI--VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT--  144 (407)
Q Consensus        69 ~~y~~~--~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~--  144 (407)
                      +.|+..  +....|.++++++. +.       +..++  ++||+.|+..+   +..+.+||.|++....|.+....+.  
T Consensus        47 y~YsR~gnPT~~~lE~~la~LE-~~-------~~a~~--~sSGmaAi~~~---l~~l~~gd~iv~~~~~yg~t~~~~~~~  113 (393)
T d1n8pa_          47 YEYSRSQNPNRENLERAVAALE-NA-------QYGLA--FSSGSATTATI---LQSLPQGSHAVSIGDVYGGTHRYFTKV  113 (393)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHT-TC-------SEEEE--ESCHHHHHHHH---HHTSCSSCEEEEESSCCHHHHHHHHHT
T ss_pred             eeeeCCCChHHHHHHHHHHHHh-CC-------ceEEE--ecCchhHHHhh---hhcccCCCeeeeeeeecccchhhhhhh
Confidence            446552  23556677777766 32       56777  88888888654   5667899999999999988766665  


Q ss_pred             --hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHH----HcCceeeecc
Q 015435          145 --LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMR----SKGLLPFFDS  218 (407)
Q Consensus       145 --~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~----~~~~~li~D~  218 (407)
                        ..|..+..++        .+.+++++.+.  +++++|++ -+|.||+..+.+   +++|+++|+    ++|+++|+|.
T Consensus       114 l~~~gi~~~~~~--------~~~~~~~~~i~--~~t~lv~~-EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDn  179 (393)
T d1n8pa_         114 ANAHGVETSFTN--------DLLNDLPQLIK--ENTKLVWI-ETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDN  179 (393)
T ss_dssp             STTTCSCCEEES--------SHHHHHHHHSC--SSEEEEEE-CSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEEC
T ss_pred             hhcccceeEEee--------cchHHHHHHhh--hhcceeEe-cCcchhhhhccc---hhhhhhhhhhhcccCCceEEEec
Confidence              5566665552        24567888887  77888888 899999999875   677777777    6899999999


Q ss_pred             ccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHH
Q 015435          219 AYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGA  298 (407)
Q Consensus       219 ~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (407)
                      .++....-         +.+  ...-.|++.|.+|.++..|-=+|.++ +..++++.++    +...........++..+
T Consensus       180 T~atP~~~---------~Pl--~~GADiVvhS~TKyi~GhsDv~~G~v-~~~~~~~~~~----l~~~~~~~G~~~~p~~a  243 (393)
T d1n8pa_         180 TFLSPYIS---------NPL--NFGADIVVHSATKYINGHSDVVLGVL-ATNNKPLYER----LQFLQNAIGAIPSPFDA  243 (393)
T ss_dssp             TTTHHHHC---------CGG--GGTCSEEEEETTTTTTCSSCCCCEEE-EESCHHHHHH----HHHHHHHHCCCCCHHHH
T ss_pred             CccCcccC---------Cch--hhCCCEEEEccccccCCCCcccccee-eecchhHHHH----HHHHHhhcCCCCChHHH
Confidence            97532221         111  12356999999999987666555542 4555544444    33344444446677777


Q ss_pred             HHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-C------CCCC-----ccc----cc--CCceeEEec-C
Q 015435          299 SIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR-G------TPGD-----WSH----II--KQIGMFTFT-G  359 (407)
Q Consensus       299 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~------~~~~-----~~~----~~--~~~~~~~~~-~  359 (407)
                      ..+..-++..          ..+.++..++...+.+.|+.. +      +|..     ...    ..  ..|+++.|. .
T Consensus       244 ~ll~rgl~Tl----------~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~  313 (393)
T d1n8pa_         244 WLTHRGLKTL----------HLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIK  313 (393)
T ss_dssp             HHHHHHHTTH----------HHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEES
T ss_pred             HHHHhCCcch----------hhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEe
Confidence            7777666654          345566677888888888653 2      1110     000    01  125566654 3


Q ss_pred             CCHHHHHHhHhhccEEE-cC--C-------------------------C------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435          360 LNSEQVAFMTKEYHIYM-TS--D-------------------------G------RISMAGLSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       360 ~~~~~~~~~l~~~gi~~-~~--g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~  405 (407)
                      -+.+.+.++++...++- .+  |                         |      |||++-   |+++.+++.|.++|+.
T Consensus       314 ~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGl---E~~~DLi~Dl~~AL~~  390 (393)
T d1n8pa_         314 GGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGI---EDTDDLLEDIKQALKQ  390 (393)
T ss_dssp             SCHHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCcceecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEecc---CCHHHHHHHHHHHHHH
Confidence            35565666655544322 11  1                         1      888773   8999999999999874

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.66  E-value=2.4e-15  Score=139.59  Aligned_cols=320  Identities=16%  Similarity=0.119  Sum_probs=187.4

Q ss_pred             cccchhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH  125 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~  125 (407)
                      |.|.++-+++++++.  ....++++.  ..-+.+.|+.+++++ +...    +..|++  +.|||++++++  +...+.+
T Consensus        24 PGP~~v~~~Vl~am~--~~~~~hr~~ef~~i~~~~r~~l~~ll-~~~~----~~~i~~--~g~gT~~~~~~--~~~~~~~   92 (377)
T d1vjoa_          24 PGPSNAHPSVLQAMN--VSPVGHLDPAFLALMDEIQSLLRYVW-QTEN----PLTIAV--SGTGTAAMEAT--IANAVEP   92 (377)
T ss_dssp             SSCCCCCHHHHHHHS--SCCCCTTSHHHHHHHHHHHHHHHHHH-TCCC----SCEEEE--SSCHHHHHHHH--HHHHCCT
T ss_pred             CCCCCCCHHHHHHhC--cCCCCCCCHHHHHHHHHHHHHHHHHh-CCCC----CeEEEE--cCcHHHHHHHH--HHhcccc
Confidence            556666666777775  223444543  223778888898888 4322    246666  88899999999  4666789


Q ss_pred             CCeEEecCCCCCCh--HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435          126 QLTIYIPQPTWGNH--PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI  203 (407)
Q Consensus       126 gd~Vi~~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i  203 (407)
                      |+.+++....+...  .......+.....+..  +.+...+.+..+..... +.+.++.+ ++.+|.||+..+   +++|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~v~~-~~~~~~tg~~~~---i~~i  165 (377)
T d1vjoa_          93 GDVVLIGVAGYFGNRLVDMAGRYGADVRTISK--PWGEVFSLEELRTALET-HRPAILAL-VHAETSTGARQP---LEGV  165 (377)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCHHHHHHHHHH-HCCSEEEE-ESEETTTTEECC---CTTH
T ss_pred             ccccceeeechhhhhhhhhhhhhccccccccc--CCCCcccchhhhhhhhc-Ccceeeee-eeeeccceeeec---hhhh
Confidence            99988887655433  2233455666666655  44455666666655442 35666666 677899999654   7888


Q ss_pred             HHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHh
Q 015435          204 RQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLK  283 (407)
Q Consensus       204 ~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~  283 (407)
                      +++|+++|.++++|.+++..... .+         .+..+..++..|..|.++.|+ .+|.+   ..+++..+.......
T Consensus       166 ~~~~~~~g~~~~vDa~~~~g~~~-~~---------~~~~~~d~~~~s~~K~~~gp~-g~~~~---~~~~~~~~~~~~~~~  231 (377)
T d1vjoa_         166 GELCREFGTLLLVDTVTSLGGVP-IF---------LDAWGVDLAYSCSQKGLGCSP-GASPF---TMSSRAIEKLQRRRT  231 (377)
T ss_dssp             HHHHHHHTCEEEEECTTTTTTSC-CC---------TTTTTCSEEECCSSSTTCSCS-SCEEE---EECHHHHHHHHTCSS
T ss_pred             hhhhhhccceEEEecchhhhhhh-hc---------ccccccceeeecccccccCCC-EEEEe---cchhhHHhhhhccCC
Confidence            88899999999999987533221 11         122344567778888765333 23444   333433332211100


Q ss_pred             h---------------hhhcccCCC-ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435          284 L---------------VIRPMYSSP-PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH  347 (407)
Q Consensus       284 ~---------------~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  347 (407)
                      .               .....+..+ +......+..+.....     ....+...++.+++.+++.+.+...+.......
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  306 (377)
T d1vjoa_         232 KVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIA-----QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEK  306 (377)
T ss_dssp             CCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG
T ss_pred             CCcceeeccchhhhccCcccccccccceechhhhHHHHhhhh-----hcCchHHHHHHHHHhhhhhhhhhccCceeecCh
Confidence            0               000111122 2222222222221110     123567777888888999999988774210110


Q ss_pred             -ccCCce-eEEec-CCCHHHH-HHhHhhccEEEcCC------C--eEE-ecC-CCCCChhHHHHHHHHHHH
Q 015435          348 -IIKQIG-MFTFT-GLNSEQV-AFMTKEYHIYMTSD------G--RIS-MAG-LSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       348 -~~~~~~-~~~~~-~~~~~~~-~~~l~~~gi~~~~g------g--Ris-~~~-~~~e~i~~~~~~l~~~l~  404 (407)
                       ....+. .|... +++.+.+ ..+++++||.+..|      +  ||| ++. .++||+++++++|+++++
T Consensus       307 ~~rs~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         307 EYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             GGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             HhcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence             011111 12222 4566655 56778889998765      2  998 453 256889999999999874

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.66  E-value=3.5e-15  Score=138.16  Aligned_cols=305  Identities=9%  Similarity=0.020  Sum_probs=192.4

Q ss_pred             cchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCC--C
Q 015435           50 VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ--L  127 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~g--d  127 (407)
                      ..+..+++.+.+.  .   ..|+...-+.+|.+.+++++ +.       +++++  ++|||.|+.++++.+. +.+|  |
T Consensus        11 ~~~~~~~v~~~l~--~---~~~~~G~~v~~fE~~~~~~~-g~-------k~ai~--~~Sgt~Al~~al~al~-~~~~~~~   74 (371)
T d2fnua1          11 DKEDKKAVLEVLN--S---KQLTQGKRSLLFEEALCEFL-GV-------KHALV--FNSATSALLTLYRNFS-EFSADRN   74 (371)
T ss_dssp             CHHHHHHHHHHHT--S---SCCSSSHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHHHHSS-CCCTTSC
T ss_pred             CHHHHHHHHHHHc--C---CCccCCHHHHHHHHHHHHHH-Cc-------CeEEE--EecHHHHHHHHHHHhc-ccCCCCC
Confidence            4556666666664  2   22333334788999999988 64       67888  9999999999942221 2234  5


Q ss_pred             eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHH
Q 015435          128 TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLM  207 (407)
Q Consensus       128 ~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~  207 (407)
                      +|++|..+|.....++...|++++.++++ ++ ...+.+++++.+.  +++++++++    +.-|...   ++++|.++|
T Consensus        75 eVi~p~~t~~a~~~ai~~~G~~pv~vDi~-~~-~~~~~~~~~~~~~--~~t~avi~v----h~~G~~~---~~~~i~~~~  143 (371)
T d2fnua1          75 EIITTPISFVATANMLLESGYTPVFAGIK-ND-GNIDELALEKLIN--ERTKAIVSV----DYAGKSV---EVESVQKLC  143 (371)
T ss_dssp             EEEECSSSCTHHHHHHHHTTCEEEECCBC-TT-SSBCGGGSGGGCC--TTEEEEEEE----CGGGCCC---CHHHHHHHH
T ss_pred             eeecccccccccceeeeccCccccccccc-cc-ccccchhhhhhcc--chhhccccc----ccccccc---ccccccccc
Confidence            89999999999999999999999999983 44 3566677877766  667777774    3446643   577888889


Q ss_pred             HHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhh
Q 015435          208 RSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIR  287 (407)
Q Consensus       208 ~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~  287 (407)
                      +++|+.+|+|.+++....-..    ..   ....++..++.+..+|.++. |- -|.+  ++.++++.+++.........
T Consensus       144 ~~~~i~lIEDaaqa~Ga~~~~----~~---~G~~g~~~~~Sf~~~K~l~~-g~-GG~i--~t~~~~~~~~~~~~~~~g~~  212 (371)
T d2fnua1         144 KKHSLSFLSDSSHALGSEYQN----KK---VGGFALASVFSFHAIKPITT-AE-GGAV--VTNDSELHEKMKLFRSHGML  212 (371)
T ss_dssp             HHHTCEEEEECTTCTTCEETT----EE---TTSSSSEEEEECCTTSSSCC-SS-CEEE--EESCHHHHHHHHHHTBTTEE
T ss_pred             cccchhhccchhhccCceecc----cc---CCcccccccccccccccccc-cc-ceEE--Eeechhhhhhcccccccccc
Confidence            999999999999764432110    00   12334555666666899874 43 4777  79998888877664443321


Q ss_pred             c------------ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC----C
Q 015435          288 P------------MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK----Q  351 (407)
Q Consensus       288 ~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~  351 (407)
                      .            ..+..+.+....+...|+..          ++..++-+++.+++.+.|.+.+.   +....+    .
T Consensus       213 ~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l----------~~~~~~R~~~~~~y~~~l~~~~~---~~~~~~~~~~~  279 (371)
T d2fnua1         213 KKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA----------PFLMQKREEAALTYDRIFKDNPY---FTPLHPLLKDK  279 (371)
T ss_dssp             ESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH----------HHHHHHHHHHHHHHHHHHTTCSS---EEESGGGCSSC
T ss_pred             cccccccccccccccccccchhhhhhhhhhhhc----------cchhhhhhhhhhhhccccccccc---ccccccccccc
Confidence            0            11123343344444344332          33333344566666777776542   222211    1


Q ss_pred             ceeE--Ee-cC----CCHHHHHHhHhhccEEEcCC----------------C----------e-EEec---CCCCCChhH
Q 015435          352 IGMF--TF-TG----LNSEQVAFMTKEYHIYMTSD----------------G----------R-ISMA---GLSSKTVPH  394 (407)
Q Consensus       352 ~~~~--~~-~~----~~~~~~~~~l~~~gi~~~~g----------------g----------R-is~~---~~~~e~i~~  394 (407)
                      ..++  .+ +.    ...+.+.+.|.++||.+.+.                +          | |++.   .++++|+++
T Consensus       280 ~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~  359 (371)
T d2fnua1         280 SSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQN  359 (371)
T ss_dssp             CCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHH
T ss_pred             cccccccccccccchhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHH
Confidence            1211  11 11    13455666777799987642                1          2 3542   367899999


Q ss_pred             HHHHHHHHHHh
Q 015435          395 LTDAIHAAVTR  405 (407)
Q Consensus       395 ~~~~l~~~l~~  405 (407)
                      .++.|.++++.
T Consensus       360 I~~~i~~~~~~  370 (371)
T d2fnua1         360 IAHSVLKTFES  370 (371)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999998874

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=8.8e-16  Score=146.70  Aligned_cols=305  Identities=11%  Similarity=0.056  Sum_probs=180.8

Q ss_pred             ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCe---------EEecCCCCCCh
Q 015435           69 KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT---------IYIPQPTWGNH  139 (407)
Q Consensus        69 ~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~---------Vi~~~p~y~~~  139 (407)
                      ..|+......+|++++++++ +.       +.+++  ++||++|+.+++..+  +++||.         ++.....|...
T Consensus        68 ~~Y~~~~~~~~le~~~a~l~-G~-------~~~~~--~~sGt~A~~~a~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~  135 (467)
T d2v1pa1          68 EAFSGSRSYYALAESVKNIF-GY-------QYTIP--THQGRGAEQIYIPVL--IKKREQEKGLDRSKMVAFSNYFFDTT  135 (467)
T ss_dssp             CCSSSCHHHHHHHHHHHHHT-CC-------SEEEE--ECSSTTTHHHHHHHH--HHHHHHHHCCCTTTCEEEESSCCHHH
T ss_pred             hhhcCCchHHHHHHHHHHHH-CC-------CEEEE--CCCCHHHHHHHHHHH--hhccceEecCCCCcEEEEeccccccc
Confidence            35877778899999999988 64       67888  999999999996444  444444         44444445555


Q ss_pred             HHHHhhcCceeeEEEeecC--------CCCCcChhhHHHHHHcC--CCCcEEEEecCCCCC-CCCCCCHHHHHHHHHHHH
Q 015435          140 PKVFTLAGLSVKTYRYYDP--------ATRGLNFQGLLEDLRAA--PSGAIVLLHACAHNP-TGVDPTLEQWEQIRQLMR  208 (407)
Q Consensus       140 ~~~~~~~G~~~~~v~~~~~--------~~~~~d~~~l~~~i~~~--~~~~~v~i~~~p~NP-tG~~~~~~~l~~i~~~~~  208 (407)
                      .......|..++.++....        ....+|++++++.+.+.  +..+++++ .+.+|. .|.+++.+++++|.++|+
T Consensus       136 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~-e~~~~~~gg~~~~~~~l~~i~~ia~  214 (467)
T d2v1pa1         136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVA-TITSNSAGGQPVSLANLKAMYSIAK  214 (467)
T ss_dssp             HHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEE-ESSBCGGGCBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeee-cceeeccccccCCHHHHHHHHHHHH
Confidence            6677788999988876311        13467999999998743  23455666 444444 478899999999999999


Q ss_pred             HcCceeeeccccccc----------cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHH
Q 015435          209 SKGLLPFFDSAYQGF----------ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRV  278 (407)
Q Consensus       209 ~~~~~li~D~~y~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~  278 (407)
                      +||++|++|+++...          .+.+.  ....+.. .......++..|.+|.++.  ...|++  .+.++.+....
T Consensus       215 ~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~--~~~~i~~-~~~~~~d~~s~s~~K~~~~--~~gg~i--~~~~~~~~~~~  287 (467)
T d2v1pa1         215 KYDIPVVMDSARFAENAYFIKQREAEYKDW--TIEQITR-ETYKYADMLAMSAKKDAMV--PMGGLL--CMKDDSFFDVY  287 (467)
T ss_dssp             HTTCCEEEECTTHHHHHHHHHHHCGGGTTS--CHHHHHH-HHGGGCSEEEEESSSTTCC--SSCEEE--EECSGGGHHHH
T ss_pred             HcCCEEEEechhhhccccccccccccccCC--cccccch-hhcccCCEEEecCCCCCCC--CCceeE--EecchhhhhHH
Confidence            999999999996421          11100  1111111 0112345667788887753  334555  45555544433


Q ss_pred             HHHHhhhhh---cccC-CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCc-e
Q 015435          279 ESQLKLVIR---PMYS-SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQI-G  353 (407)
Q Consensus       279 ~~~~~~~~~---~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~  353 (407)
                      ...-.....   .... +.....+.+....+...        ...+..++..++.+++.+.|.+.+.    .+..+.+ .
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~l~~~L~~~~~----~v~~~~~~~  355 (467)
T d2v1pa1         288 TECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG--------MNLDWLAYRIAQVQYLVDGLEEIGV----VCQQAGGHA  355 (467)
T ss_dssp             HHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHHHTTC----CEEEECSSC
T ss_pred             HhhcccccccccCcchhhhHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHHHHHHHhcCC----cccCCCccc
Confidence            222211111   1111 22222222222222211        0123334455678889999988773    3222211 1


Q ss_pred             eEEe-----cCC-----C-HHHHHHhHhhccEEEcCC-----------------C----eEEecC--CCCCChhHHHHHH
Q 015435          354 MFTF-----TGL-----N-SEQVAFMTKEYHIYMTSD-----------------G----RISMAG--LSSKTVPHLTDAI  399 (407)
Q Consensus       354 ~~~~-----~~~-----~-~~~~~~~l~~~gi~~~~g-----------------g----Ris~~~--~~~e~i~~~~~~l  399 (407)
                      .+..     ...     . ...+..++.+.||.....                 .    |+++..  .++|++++++++|
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l  435 (467)
T d2v1pa1         356 AFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAF  435 (467)
T ss_dssp             EEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHH
T ss_pred             eeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHH
Confidence            1211     111     1 223556777788855321                 1    787643  4779999999999


Q ss_pred             HHHHHh
Q 015435          400 HAAVTR  405 (407)
Q Consensus       400 ~~~l~~  405 (407)
                      ++++++
T Consensus       436 ~~v~~~  441 (467)
T d2v1pa1         436 KHVKEN  441 (467)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            999864

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.65  E-value=1e-14  Score=135.12  Aligned_cols=174  Identities=10%  Similarity=-0.032  Sum_probs=123.2

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEee
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY  156 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~  156 (407)
                      ..+|.+.+++++ +.       +++++  ++|||.|+.++++.+ .+.+||+|++|..+|.....++..+|++++.++++
T Consensus        23 ~~~fE~~~~~~~-~~-------~~~~~--~~SgT~Al~lal~~l-~~~~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di~   91 (374)
T d1o69a_          23 VNRFEQSVKDYS-KS-------ENALA--LNSATAALHLALRVA-GVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD   91 (374)
T ss_dssp             HHHHHHHHHHHH-CC-------SEEEE--ESCHHHHHHHHHHHT-TCCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBC
T ss_pred             HHHHHHHHHHHH-Cc-------CeEEE--eCCHHHHHHHHHHHc-CCCCcCEEEeCCcchHhhHHHHhhccceeEecccc
Confidence            788999999988 64       67888  999999999995322 25689999999999999999999999999999984


Q ss_pred             cCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHH
Q 015435          157 DPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR  236 (407)
Q Consensus       157 ~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~  236 (407)
                       +.....+.+..+......+++++++++.    ..|..   .++.+|.++|+++|+.||+|.+.+....-.    ...  
T Consensus        92 -~~~~~~~~~~~~~~~~~~~~~~aii~~~----~~G~~---~d~~~i~~~~~~~~i~vIED~a~a~g~~~~----~~~--  157 (374)
T d1o69a_          92 -ETYNIDVDLLKLAIKECEKKPKALILTH----LYGNA---AKMDEIVEICKENDIVLIEDAAEALGSFYK----NKA--  157 (374)
T ss_dssp             -TTSSBCHHHHHHHHHHCSSCCCEEEEEC----GGGCC---CCHHHHHHHHHHTTCEEEEECTTCTTCEET----TEE--
T ss_pred             -cccccccccccccchhcccccccccccc----cccch---hhhHHHHHHhhccCcchhhhhhhhhcceEC----Cee--
Confidence             4434444444443333335677777743    34443   368888888999999999999976433210    000  


Q ss_pred             HHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHH
Q 015435          237 MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVES  280 (407)
Q Consensus       237 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~  280 (407)
                       +...++-.++.+..+|.++..|  -|.+  ++.|+++++++..
T Consensus       158 -~G~~gd~~~fSf~~~K~l~tge--GG~i--~tnn~~~~~~~~~  196 (374)
T d1o69a_         158 -LGTFGEFGVYSYNGNKIITTSG--GGML--IGKNKEKIEKARF  196 (374)
T ss_dssp             -TTSSSSEEEEECCTTSSSCCSS--CEEE--EESCHHHHHHHHH
T ss_pred             -cCCCCceEEEeccCcccccccc--ceee--hhhhHHHHHhhcc
Confidence             1223455566666678887433  3666  7888887776555

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.64  E-value=3.6e-15  Score=138.91  Aligned_cols=323  Identities=10%  Similarity=0.080  Sum_probs=187.1

Q ss_pred             cccchhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC
Q 015435           48 PLVLNVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH  125 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~  125 (407)
                      |.|..+-+++++++.  ....++++.  ..-+.+.|+.+++++ +..+    .+.|++  +.|||++++++  +...+.+
T Consensus        23 PGP~~~~~~V~~Am~--~~~~~hr~~ef~~i~~~~r~~L~~ll-~~~~----~~~i~~--~gsgT~a~ea~--~~~l~~~   91 (388)
T d2ch1a1          23 PGPSNCSKRVLTAMT--NTVLSNFHAELFRTMDEVKDGLRYIF-QTEN----RATMCV--SGSAHAGMEAM--LSNLLEE   91 (388)
T ss_dssp             SSSCCCCHHHHHHTT--SCCCCTTCHHHHHHHHHHHHHHHHHH-TCCC----SCEEEE--SSCHHHHHHHH--HHHHCCT
T ss_pred             CCCCCCCHHHHHHhC--cCCCCCCCHHHHHHHHHHHHHHHHHh-CCCC----CeEEEE--cCcHHHHHHHH--HHHhccc
Confidence            445555555666665  223344544  234678888999988 4321    244666  88899999999  4555789


Q ss_pred             CCeEEecCCCCCChH--HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435          126 QLTIYIPQPTWGNHP--KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI  203 (407)
Q Consensus       126 gd~Vi~~~p~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i  203 (407)
                      |++|++....+.+..  ...+..+...+.+..  ++....+.+..++.... .+++++++ ++.+|.||+..+   +++|
T Consensus        92 ~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~v~~-~~~~t~tG~~~~---~~~i  164 (388)
T d2ch1a1          92 GDRVLIAVNGIWAERAVEMSERYGADVRTIEG--PPDRPFSLETLARAIEL-HQPKCLFL-THGDSSSGLLQP---LEGV  164 (388)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC--CTTSCCCHHHHHHHHHH-HCCSEEEE-ESEETTTTEECC---CTTH
T ss_pred             cccccccccccccccchhhhhhhccccccccc--ccccccchhhhhhhhcc-CCcceeee-eecccccccccc---hhhh
Confidence            999988876654443  345577888888877  44566777777776653 34666666 677999999765   5666


Q ss_pred             HHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHh
Q 015435          204 RQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLK  283 (407)
Q Consensus       204 ~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~  283 (407)
                      +++|+++|.++++|.+.+.... ..+         ....+..+++.|-.|.++.++ .+|.+   ..+++..+.......
T Consensus       165 ~~~~~~~~~~~~vD~~ss~g~~-pid---------~~~~~~d~~~~s~~K~~~gp~-G~g~~---~~~~~~~~~~~~~~~  230 (388)
T d2ch1a1         165 GQICHQHDCLLIVDAVASLCGV-PFY---------MDKWEIDAVYTGAQKVLGAPP-GITPI---SISPKALDVIRNRRT  230 (388)
T ss_dssp             HHHHHHTTCEEEEECTTTBTTB-CCC---------TTTTTCCEEECCCC-CCCCCS-SCEEE---EECHHHHHHHHTCSS
T ss_pred             cchhccccceeeeeeeeccccc-ccc---------hhccCceEEEEccccccCCCC-eEEEE---eccHHHHHhhhcccC
Confidence            7779999999999998653332 121         122344577777788765332 24555   333333332211000


Q ss_pred             hh-------------------hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435          284 LV-------------------IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD  344 (407)
Q Consensus       284 ~~-------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  344 (407)
                      ..                   .......++......+...++...     ........++.++...+....+...+....
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (388)
T d2ch1a1         231 KSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIA-----EEGLENQIKRRIECAQILYEGLGKMGLDIF  305 (388)
T ss_dssp             CCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHHTCCBS
T ss_pred             ccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHhhhhhcccccc
Confidence            00                   001112334444444443333211     122334444444555555555555442100


Q ss_pred             c-c--cccCCceeEEec-CCCHHH-HHHhHhhccEEEcCCC--------eEE-ecCC-CCCChhHHHHHHHHHHHhhC
Q 015435          345 W-S--HIIKQIGMFTFT-GLNSEQ-VAFMTKEYHIYMTSDG--------RIS-MAGL-SSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       345 ~-~--~~~~~~~~~~~~-~~~~~~-~~~~l~~~gi~~~~gg--------Ris-~~~~-~~e~i~~~~~~l~~~l~~~~  407 (407)
                      . .  ...+....|.+. +++.+. +..+++++||.+.+|.        ||+ ++.. ++|+|++++++|+++|+..+
T Consensus       306 ~~~~~~rs~~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~  383 (388)
T d2ch1a1         306 VKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH  383 (388)
T ss_dssp             SCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHhCCeEEEEECCCCCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence            0 0  011111122332 566655 4566787899998762        998 6654 56899999999999998754

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.3e-14  Score=136.97  Aligned_cols=284  Identities=11%  Similarity=-0.005  Sum_probs=180.9

Q ss_pred             eEEeecCCcccHHHHHHHHHHh-h--------cCC-CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHH
Q 015435          101 VTTVQCLSGTGSLRVGAEFLAR-H--------YHQ-LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLE  170 (407)
Q Consensus       101 i~~~~t~g~t~a~~~~~~~~~~-~--------~~g-d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  170 (407)
                      -.+  |+|||+|+.++....+. +        ... ..++++...+.++.+.++.+|++++.+|.. +.++.+|++++++
T Consensus       118 G~~--t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~-~~~~~~d~~~L~~  194 (450)
T d1pmma_         118 GTN--TIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMR-PGQLFMDPKRMIE  194 (450)
T ss_dssp             EEE--ESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCB-TTBCSCCHHHHHH
T ss_pred             Cee--eCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeec-CCCCcCcHHHHHH
Confidence            467  99999999988533321 1        122 357778888999999999999999999984 5568999999999


Q ss_pred             HHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHH---HHHcCceeeeccccccccC--CCCCchhHHHHHHHHcCCcE
Q 015435          171 DLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQL---MRSKGLLPFFDSAYQGFAS--GSLDADAQSVRMFVADGGEC  245 (407)
Q Consensus       171 ~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~---~~~~~~~li~D~~y~~~~~--~~~~~~~~~~~~~~~~~~~~  245 (407)
                      .++  +++.+|++ +.++|.||.+=+.+++.+|++.   |+++|+++.+|.||.++..  ..... .+    ........
T Consensus       195 ~i~--~~t~~Vv~-t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~-~~----~~~~~~aD  266 (450)
T d1pmma_         195 ACD--ENTIGVVP-TFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDI-VW----DFRLPRVK  266 (450)
T ss_dssp             HCC--TTEEEEEC-BBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTC-CC----STTSTTEE
T ss_pred             Hhh--hCceEEEe-eeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhh-hh----hhccccee
Confidence            997  55555555 7899999998887766665544   6778999999999876642  00000 00    00112345


Q ss_pred             EEEEecCccccccCCCcceeEEeecChhhHHHHHHH----HhhhhhcccCCCChhHHHHH--HHHhcChhhHHhHHHHHH
Q 015435          246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQ----LKLVIRPMYSSPPIHGASIV--ATILKDSTMYKEWTLELK  319 (407)
Q Consensus       246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~  319 (407)
                      .+..|.+|.++ ....+||+  +.++++........    +.......+...+..+..++  -..+..     .-.+..+
T Consensus       267 Si~~s~HK~~~-~p~g~g~l--~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~-----~G~~G~~  338 (450)
T d1pmma_         267 SISASGHKFGL-APLGCGWV--IWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLR-----LGREGYT  338 (450)
T ss_dssp             EEEEETTTTTC-CCSSCEEE--EESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHH-----HHHHHHH
T ss_pred             EeecChhhccC-CCCCeeEE--EecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhh-----hhHHHHH
Confidence            77889999765 34668998  68766532211000    00000111122222111111  111111     1124577


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCcccccC-----CceeEEec-------CCCHHHHHHhHhhccEEEc----CCC---
Q 015435          320 AMADRIISMRQQLFDALSARGTPGDWSHIIK-----QIGMFTFT-------GLNSEQVAFMTKEYHIYMT----SDG---  380 (407)
Q Consensus       320 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~l~~~gi~~~----~gg---  380 (407)
                      +..++..++.+++.+.|++.+.   +++..+     ..+.+.|.       +++...+...|.++|..+.    |..   
T Consensus       339 ~~~~~~~~la~~l~~~L~~~~~---~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~  415 (450)
T d1pmma_         339 KVQNASYQVAAYLADEIAKLGP---YEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATD  415 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSC---EEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCTT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC---eEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcCC
Confidence            8888889999999999998874   555421     22334432       3466667777777886552    221   


Q ss_pred             ----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          381 ----RISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       381 ----Ris~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                          |+.+.. .++++++++++.|+++++++
T Consensus       416 ~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l  446 (450)
T d1pmma_         416 IVVMRIMCRRGFEMDFAELLLEDYKASLKYL  446 (450)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence                888765 56788999999999998765

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.62  E-value=2.6e-15  Score=143.20  Aligned_cols=308  Identities=12%  Similarity=0.025  Sum_probs=166.2

Q ss_pred             CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc-ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCc
Q 015435           71 YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG-TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGL  148 (407)
Q Consensus        71 y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~-t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~  148 (407)
                      +.|..-+.++++.+|+++ +.       ++.++  +++| |+++.++  +...+++||.|+++..+|.+...... ..+.
T Consensus        62 ~~~~~~i~eae~~~A~~~-ga-------~~a~f--~~~Gtt~~n~a~--i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~  129 (462)
T d1c4ka2          62 LIHEGPAVAAEKHAARVY-NA-------DKTYF--VLGGSSNANNTV--TSALVSNGDLVLFDRNNHKSVYNSALAMAGG  129 (462)
T ss_dssp             TTTBTHHHHHHHHHHHHT-TC-------SEEEE--ESSHHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHTTTTCC
T ss_pred             cCCCHHHHHHHHHHHHHh-CC-------CeEEE--ECCchHHHHHHH--HHHhcCCCCeEEecccchHHHHHHHHHHhcC
Confidence            344444788899999988 64       56666  6555 4555555  45668899999999999988776554 3344


Q ss_pred             eeeEEEee-cCCCC--CcChhhH-----HHHHHc-------CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCce
Q 015435          149 SVKTYRYY-DPATR--GLNFQGL-----LEDLRA-------APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLL  213 (407)
Q Consensus       149 ~~~~v~~~-~~~~~--~~d~~~l-----~~~i~~-------~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~  213 (407)
                      .++..+.. ++.+.  +++.+++     ++.+.+       .+++..++++. .+|-+|.+.   ++++|+++|++||++
T Consensus       130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~G~~~---dl~~I~~ia~~~g~~  205 (462)
T d1c4ka2         130 RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQ-LGTYDGTIY---NAHEVVKRIGHLCDY  205 (462)
T ss_dssp             EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEE-SBCTTSEEE---CHHHHHHHHGGGBSE
T ss_pred             CceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEE-eeeeccchh---hHHHHHHHHHHcCCE
Confidence            44443321 22211  2222222     221110       13344444433 345678855   588888889999999


Q ss_pred             eeeccccccccCCCCCchhHHHHHHHH----cCCcEEEEEecCccccccCCCcceeEEeecChhh--------HHHHHHH
Q 015435          214 PFFDSAYQGFASGSLDADAQSVRMFVA----DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV--------ASRVESQ  281 (407)
Q Consensus       214 li~D~~y~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~--------~~~~~~~  281 (407)
                      |++|+++....... +....+......    .....+++.|++|.++.++  .|.+. ...+..+        .+.+...
T Consensus       206 l~vD~A~~~~~~~~-~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll-~~~~~~~~~~~~~~~~~~~~~~  281 (462)
T d1c4ka2         206 IEFDSAWVGYEQFI-PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQI-HKKDSHIKGQLRYCDHKHFNNS  281 (462)
T ss_dssp             EEEECTTCCGGGSS-GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEE-EEECGGGTTSTTCCCHHHHHHH
T ss_pred             EEEechhhcccccc-CcCCcchhhccccccccCCccEEEEecCccccccc--ceEEE-EeccccccccchhhhHHHHHHh
Confidence            99999985443211 000001000000    1123689999999987544  34442 3443222        1222222


Q ss_pred             HhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------------
Q 015435          282 LKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG------------------  343 (407)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------------------  343 (407)
                      ....   .+.+++...+..+..+..-..     ....+++.++..++.+++++.+++.+...                  
T Consensus       282 ~~~~---~t~sp~~~~~asl~~a~~~~~-----~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~  353 (462)
T d1c4ka2         282 FNLF---MSTSPFYPMYAALDVNAAMQE-----GEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDT  353 (462)
T ss_dssp             HHHH---SCSSCCHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCH
T ss_pred             hhhc---ccCCchHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccch
Confidence            2222   223444443333332221110     02234555666667777777776653210                  


Q ss_pred             -------------------Cccccc-------C------------CceeEEecCCCHHHHHHhHhhccEEEcCCC----e
Q 015435          344 -------------------DWSHII-------K------------QIGMFTFTGLNSEQVAFMTKEYHIYMTSDG----R  381 (407)
Q Consensus       344 -------------------~~~~~~-------~------------~~~~~~~~~~~~~~~~~~l~~~gi~~~~gg----R  381 (407)
                                         .+....       |            ..+.+.-.+++...+.+.|.++||.+...+    |
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~  433 (462)
T d1c4ka2         354 EDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSIL  433 (462)
T ss_dssp             HHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEE
T ss_pred             HhhhcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEE
Confidence                               000000       0            000011124466777778888999775543    6


Q ss_pred             EEecC-CCCCChhHHHHHHHHHHHhh
Q 015435          382 ISMAG-LSSKTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       382 is~~~-~~~e~i~~~~~~l~~~l~~~  406 (407)
                      ++++. .+++++++++++|+++.+.+
T Consensus       434 ~~~s~~~T~edid~li~aL~ei~r~~  459 (462)
T d1c4ka2         434 FLMTPAETPAKMNNLITQLLQLQRLI  459 (462)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            66653 58899999999999987643

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.62  E-value=8.1e-15  Score=134.61  Aligned_cols=293  Identities=15%  Similarity=0.198  Sum_probs=174.9

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCce-EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH--------hhcC
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRV-TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF--------TLAG  147 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i-~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~--------~~~G  147 (407)
                      ++.+....|+.+|+....     +. +=++..||+.|+.++  +.+.+.|||+|+..++...++...-        ...|
T Consensus        74 iE~la~~ra~~lF~~~~a-----~w~vNVqp~SGs~An~av--~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g  146 (463)
T d2a7va1          74 IELLCQRRALEAFDLDPA-----QWGVNVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS  146 (463)
T ss_dssp             HHHHHHHHHHHHTTCCTT-----TEEEECCCSSHHHHHHHH--HHHHCCSCEECCC------------------------
T ss_pred             HHHHHHHHHHHHhCCCch-----hccCCccccccHHHHHHH--HHHHcCCCceEEeeccCcCccccccccccccccccee
Confidence            555555556666565322     11 125678888898888  5677899999999887766554221        1222


Q ss_pred             --ceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-cccc
Q 015435          148 --LSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFA  224 (407)
Q Consensus       148 --~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~  224 (407)
                        .+...+.+ ++.++.+|.+++++...+. +.++|++ ..-.+|-     .-+++++.++|++.|.+|++|.++ ++++
T Consensus       147 ~~~~~~~Y~~-d~~~~~IDyd~~~~~a~~~-kPklIi~-G~S~y~r-----~~d~~~~reIad~vga~l~~D~aH~aGLI  218 (463)
T d2a7va1         147 IFFESMPYKL-NPKTGLIDYNQLALTARLF-RPRLIIA-GTSAYAR-----LIDYARMREVCDEVKAHLLADMAHISGLV  218 (463)
T ss_dssp             -------CCB-CTTTCSBCHHHHHHHHHHH-CCSEEEE-CCSSCCS-----CCCHHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             eEeeeeeeec-cCCCCcCcHHHHHHHHhhc-CCceEEe-ccccccc-----ccCHHHHHHHhhcccceEEechhhhhHHh
Confidence              24455555 4566789999999998743 3455554 4434443     337888889999999999999997 5666


Q ss_pred             CCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChh----------hHHHHHHHHhhhhhcccCCCC
Q 015435          225 SGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTED----------VASRVESQLKLVIRPMYSSPP  294 (407)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~----------~~~~~~~~~~~~~~~~~~~~~  294 (407)
                      ..+.-+++     + +.  ..++.+|..|+|  +|-|-|.+  ++.++.          ...++.+++.....+...+.+
T Consensus       219 A~g~~~sP-----~-~~--aDvvt~tTHKTl--rGPrgGiI--l~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggp  286 (463)
T d2a7va1         219 AAKVIPSP-----F-KH--ADIVTTTTHKTL--RGARSGLI--FYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGP  286 (463)
T ss_dssp             HTTSSCCG-----G-GT--CSEEEEESSGGG--CSCSCEEE--EEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSC
T ss_pred             hhhhhcCh-----h-hh--hhhhhchhhhhh--cCCCceEE--EEcccccccccccCccchhHHHHHhhhhcCcccchhh
Confidence            55432221     1 22  247778999987  68897877  566420          000234445544444444555


Q ss_pred             hhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC-CceeEEec-----CCCHHHHHHh
Q 015435          295 IHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK-QIGMFTFT-----GLNSEQVAFM  368 (407)
Q Consensus       295 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~  368 (407)
                      .....++.++--..    ......+...+++.++.+.|.+.|.+.|    +.+... ..+-.+++     +++...+...
T Consensus       287 h~h~iAa~Ava~~e----a~~~~fk~Ya~qVv~NAk~La~~L~~~G----~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~  358 (463)
T d2a7va1         287 HNHAIAAVAVALKQ----ACTPMFREYSLQVLKNARAMADALLERG----YSLVSGGTDNHLVLVDLRPKGLDGARAERV  358 (463)
T ss_dssp             CHHHHHHHHHHHHH----HHSHHHHHHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEECTTTTCCHHHHHHH
T ss_pred             hhhhHHHHHHHHHH----hcCchHHHHHHHHHHHHHHHHHHHHhCC----CeeecCCCCCceeeeeccccCCCHHHHHHH
Confidence            55555444332111    1223455666778889999999999998    555432 11222233     4578889999


Q ss_pred             HhhccEEEcC------------CC-eEEec-----CCCCCChhHHHHHHHHHHH
Q 015435          369 TKEYHIYMTS------------DG-RISMA-----GLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       369 l~~~gi~~~~------------gg-Ris~~-----~~~~e~i~~~~~~l~~~l~  404 (407)
                      |++.||.+..            +| ||...     +..++|++++.+.|.++++
T Consensus       359 Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         359 LELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             HHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999998842            23 88643     2567889999999888774

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.60  E-value=2e-14  Score=132.37  Aligned_cols=271  Identities=17%  Similarity=0.212  Sum_probs=177.6

Q ss_pred             eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----------hhcCceeeEEEeecCCCCCcChhhHHHHHH
Q 015435          104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----------TLAGLSVKTYRYYDPATRGLNFQGLLEDLR  173 (407)
Q Consensus       104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----------~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~  173 (407)
                      ++..||+.|..++  +.+.+.|||+|+..+....+|...-          .....+...+++ +++++.+|.+++++...
T Consensus       101 Vqp~SGs~An~av--~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v-~~~~~~IDyd~l~~~a~  177 (470)
T d1rv3a_         101 VQPYSGSPANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV-NPDTGYIDYDRLEENAR  177 (470)
T ss_dssp             CCCSSHHHHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB-CTTTCSBCHHHHHHHHH
T ss_pred             ccccCCccHHHHH--HHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEE-ecccCcccHHHHHHHHH
Confidence            6788999999988  5677999999999987665554432          122346777887 46678899999999887


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-ccccCCCCCchhHHHHHHHHcCCcEEEEEecC
Q 015435          174 AAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFASGSLDADAQSVRMFVADGGECLVAQSYA  252 (407)
Q Consensus       174 ~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  252 (407)
                      +. +.++|++ ..-.+|-     .-+++++.++|++.|.+|++|.++ ++++..+.-+++     + +.  ..++.+|..
T Consensus       178 ~~-kPklIi~-G~S~y~r-----~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP-----l-~~--aDvvt~tTH  242 (470)
T d1rv3a_         178 LF-HPKLIIA-GTSCYSR-----NLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSP-----F-EH--CHVVTTTTH  242 (470)
T ss_dssp             HH-CCSEEEE-CCSSCCS-----CCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCG-----G-GT--CSEEEEESS
T ss_pred             hh-CcceEee-chhhccc-----cCCHHHHHHHHhccCCeEEecchhhhhhccccccCCh-----h-he--eeeeeeehh
Confidence            42 3455554 4434333     337888888999999999999997 555544321111     1 22  258888999


Q ss_pred             ccccccCCCcceeEEeecCh------h----hHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435          253 KNMGLYGERVGALSIVCKTE------D----VASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA  322 (407)
Q Consensus       253 K~~~~~G~r~G~~~~v~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (407)
                      |++  +|-|-|.+  ++.++      +    ...++.+++.....+...+.+.....++.++--...    +........
T Consensus       243 Ktl--rGPrgGiI--~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea----~~~~fk~Ya  314 (470)
T d1rv3a_         243 KTL--RGCRAGMI--FYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA----MTPEFKEYQ  314 (470)
T ss_dssp             GGG--CCCSCEEE--EEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH----TSHHHHHHH
T ss_pred             hhc--cCCcceEE--EEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHh----cChHHHHHH
Confidence            987  68887887  56542      0    001255555555555444555555554444221111    123345666


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccC-CceeEEec-----CCCHHHHHHhHhhccEEEcC------------CC-eEE
Q 015435          323 DRIISMRQQLFDALSARGTPGDWSHIIK-QIGMFTFT-----GLNSEQVAFMTKEYHIYMTS------------DG-RIS  383 (407)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~------------gg-Ris  383 (407)
                      +++.++.+.|.+.|.+.|    +.+... ..+-.+++     +++...+.+.|++.||.+..            +| ||.
T Consensus       315 ~qvv~NAk~La~~L~~~G----~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiG  390 (470)
T d1rv3a_         315 RQVVANCRALSAALVELG----YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLG  390 (470)
T ss_dssp             HHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCC----ceeccCCCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEec
Confidence            777789999999999998    555432 11222232     66888899999999998842            23 886


Q ss_pred             ec-----CCCCCChhHHHHHHHHHHH
Q 015435          384 MA-----GLSSKTVPHLTDAIHAAVT  404 (407)
Q Consensus       384 ~~-----~~~~e~i~~~~~~l~~~l~  404 (407)
                      ..     +..++|++++.+.|.++++
T Consensus       391 T~alTtrG~~e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         391 TPALTSRGLLEKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             CHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            43     3577899999999988774

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.57  E-value=3e-14  Score=135.15  Aligned_cols=331  Identities=9%  Similarity=0.010  Sum_probs=198.3

Q ss_pred             ccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCC-------CCCCceEEeecCCcccHHHHHHHHHH
Q 015435           49 LVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPA-------IKDNRVTTVQCLSGTGSLRVGAEFLA  121 (407)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~-------~~~~~i~~~~t~g~t~a~~~~~~~~~  121 (407)
                      .+...+...+..+. +. ....|...+...++.+.+.+|+....+.+       .....-++  |+|||+++..++...+
T Consensus        85 ~~~~~l~~~~~~~~-n~-n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~--~~Ggs~anl~al~~AR  160 (476)
T d1js3a_          85 SYPAMLADMLCGAI-GC-IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVI--QGSASEATLVALLAAR  160 (476)
T ss_dssp             CHHHHHHHHHHHHH-CC-CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEE--ESCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhh-cc-cccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceE--CCcHHHHHHHHHHHHH
Confidence            34455555555554 22 23333333344556666666663322221       11234567  9999999998864433


Q ss_pred             hh--c------CC--------C-eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---CCCcEE
Q 015435          122 RH--Y------HQ--------L-TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA---PSGAIV  181 (407)
Q Consensus       122 ~~--~------~g--------d-~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~---~~~~~v  181 (407)
                      ..  .      .|        + .|++++-+|.++.+++...|..++.+|.  +.++.+|+++|++.+.+.   ...+++
T Consensus       161 ~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~--d~~~~md~~~L~~~i~~~~~~g~~p~~  238 (476)
T d1js3a_         161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS--DGKFAMRASALQEALERDKAAGLIPFF  238 (476)
T ss_dssp             HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEecc--CCCCCcCHHHHHHHHHHHHhcCCCcEE
Confidence            21  0      11        1 4778888999999999999999999998  446889999999999742   334566


Q ss_pred             EEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435          182 LLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER  261 (407)
Q Consensus       182 ~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  261 (407)
                      ++.+.+++.||.   .+++++|+++|++||+++.+|.+|.++..-..+.. +.   +..-....-+..+++|.++.| ..
T Consensus       239 VvataGtt~~G~---iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~-~~---~~gi~~aDSit~d~HK~l~~P-~~  310 (476)
T d1js3a_         239 VVATLGTTSCCS---FDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFR-HL---LNGVEFADSFNFNPHKWLLVN-FD  310 (476)
T ss_dssp             EEEEBSCTTTCC---BCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTG-GG---GTTGGGCSEEEECHHHHSSCC-SS
T ss_pred             EeecCCCcccee---eccHHHHHHHHHhcCcEEEEecccchhhhhhcchh-hh---hcCCcccceeeecCccccccC-Cc
Confidence            665778888998   56799999999999999999999987654322111 10   111112235566789988765 45


Q ss_pred             cceeEEeecChhhHHHHHH----HHhhhh---------hcccC-CC-C--hhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435          262 VGALSIVCKTEDVASRVES----QLKLVI---------RPMYS-SP-P--IHGASIVATILKDSTMYKEWTLELKAMADR  324 (407)
Q Consensus       262 ~G~~~~v~~~~~~~~~~~~----~~~~~~---------~~~~~-~~-~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (407)
                      +|.+  +.+++........    .+....         ..++. ++ .  .+...++...+.        .+.+.+..++
T Consensus       311 ~g~~--l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G--------~~g~~~~i~~  380 (476)
T d1js3a_         311 CSAM--WVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG--------VKGLQAYIRK  380 (476)
T ss_dssp             CEEE--EESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred             ceee--cccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHh--------HhHHHHHHHH
Confidence            6777  6787543221100    000000         00011 11 1  222223322222        1456777788


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccc-cCCceeEEec--CCCH---HHHHHhHhhccEEEcCC---C----eEEecC--CCC
Q 015435          325 IISMRQQLFDALSARGTPGDWSHI-IKQIGMFTFT--GLNS---EQVAFMTKEYHIYMTSD---G----RISMAG--LSS  389 (407)
Q Consensus       325 ~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~--~~~~---~~~~~~l~~~gi~~~~g---g----Ris~~~--~~~  389 (407)
                      ..+..+++.+.+++.+.   ++.. +|..+...|-  +.+.   +...++.++..+.+.+.   |    |++++.  .++
T Consensus       381 ~~~lA~~l~~~l~~~~~---fel~~~p~l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~  457 (476)
T d1js3a_         381 HVQLSHEFEAFVLQDPR---FEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVES  457 (476)
T ss_dssp             HHHHHHHHHHHHHHCTT---EEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCH
T ss_pred             HHHHHHHHHHHHhcCCC---eEEECCCceEEEEEEccCChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCH
Confidence            88899999999998753   7655 4455554442  3322   23344444434555442   3    888764  355


Q ss_pred             CChhHHHHHHHHHHHhh
Q 015435          390 KTVPHLTDAIHAAVTRM  406 (407)
Q Consensus       390 e~i~~~~~~l~~~l~~~  406 (407)
                      ++++.+++.|+++.+++
T Consensus       458 ~did~~~~~i~~~a~~l  474 (476)
T d1js3a_         458 GHVRLAWEHIRGLAAEL  474 (476)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            78999999999988764

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.42  E-value=9.3e-14  Score=127.92  Aligned_cols=289  Identities=15%  Similarity=0.085  Sum_probs=159.7

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCC--CChHHHHhhcCceeeEEE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTW--GNHPKVFTLAGLSVKTYR  154 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y--~~~~~~~~~~G~~~~~v~  154 (407)
                      +.+.|+.+++++ +...    +.+|++  ++|++.+...+. +...+.+|+.+++..-..  ..+....+..|..++.+.
T Consensus        50 ~~~~r~~l~~l~-~~~~----~~~i~~--~~gs~t~~~ea~-~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~  121 (361)
T d2c0ra1          50 HNEAQARLLALL-GNPT----GYKVLF--IQGGASTQFAMI-PMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAAS  121 (361)
T ss_dssp             HHHHHHHHHHHT-TCCS----SEEEEE--ESSHHHHHHHHH-HHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEE
T ss_pred             HHHHHHHHHHHh-CCCC----CCEEEE--ECCCchHHHHHH-HhccccCCCceEEEeechhhhhhhhhhhhcCceeeeec
Confidence            566788887777 4321    246777  776655544432 344566888877665322  233456668898888887


Q ss_pred             eecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435          155 YYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS  234 (407)
Q Consensus       155 ~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~  234 (407)
                      .  +....++++++++.+.   ......+    +|.||.+.+   +.+|.++|+++|+++++|.+.+... .+.+.    
T Consensus       122 ~--~~~~~~~~~~~~~~~~---~~~~~~v----~~~tg~~~~---~~~i~~~~~~~~al~~vDavss~g~-~~id~----  184 (361)
T d2c0ra1         122 S--EASNYMTLPKLQEIQL---QDNAAYL----HLTSNETIE---GAQFKAFPDTGSVPLIGDMSSDILS-RPFDL----  184 (361)
T ss_dssp             C--GGGTTCSCCCGGGCCC---CTTEEEE----EEESEETTT---TEECSSCCCCTTSCEEEECTTTTTS-SCCCG----
T ss_pred             c--ccccccchhhhhhhcc---cCcceEE----EEeccccee---cceEEEeeccCCceEEEEeeccccc-ccccc----
Confidence            7  4456678888877554   2344444    577888765   4566677999999999999864333 22211    


Q ss_pred             HHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHH---------HHHHHHhhhhhcccCCCChhHHHHHHHHh
Q 015435          235 VRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVAS---------RVESQLKLVIRPMYSSPPIHGASIVATIL  305 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (407)
                             .+..+.+.|.+|.++++|.  +++.  ...+....         .+....... . ....++......+....
T Consensus       185 -------~~~di~~~s~~k~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  251 (361)
T d2c0ra1         185 -------NQFGLVYAGAQKNLGPSGV--TVVI--VREDLVAESPKHLPTMLRYDTYVKNN-S-LYNTPPSFGIYMVNEVL  251 (361)
T ss_dssp             -------GGCSEEEEETTTTTCCSSC--EEEE--EEGGGSSSCCTTSCGGGCHHHHHHTT-T-CSSCCCHHHHHHHHHHH
T ss_pred             -------ccceeEEEecccccccccC--cEEE--EEhHHhhhCccccccccccccccccc-c-ccccccceeeehhhhHH
Confidence                   1223556678999987763  2331  22221100         011111111 1 11122322222222221


Q ss_pred             cChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---cCCcee-EEec-CCCHHHHHHhHhhccEEEcCC-
Q 015435          306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI---IKQIGM-FTFT-GLNSEQVAFMTKEYHIYMTSD-  379 (407)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~-~~~~-~~~~~~~~~~l~~~gi~~~~g-  379 (407)
                      ....    .........++.++.+..+................   ...+.. |... +.+.+.+...|+++||.+.+| 
T Consensus       252 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~  327 (361)
T d2c0ra1         252 KWIE----ERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGH  327 (361)
T ss_dssp             HHHH----HTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCC
T ss_pred             Hhhh----hccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcccHHHHHHHHHHCCCEEecCC
Confidence            1100    00123344455555666666655554321101111   112211 1111 224456778888899999887 


Q ss_pred             ----C-eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          380 ----G-RISMAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       380 ----g-Ris~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                          | ||++.. .+.||++++++.|+++.++.|
T Consensus       328 ~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~~~  361 (361)
T d2c0ra1         328 RSVGGLRASIYNAVPYESCEALVQFMEHFKRSRG  361 (361)
T ss_dssp             TTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CcCCeEEEEecCCCCHHHHHHHHHHHHHHHHhcC
Confidence                2 999765 578999999999999888765

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1.6e-12  Score=119.17  Aligned_cols=292  Identities=13%  Similarity=0.013  Sum_probs=156.2

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEEE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTYR  154 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~  154 (407)
                      +.+.|+.+++++ +...    +..|++  ++|++++...+. ......+++.+++..-.+..  +....+..|..++.+.
T Consensus        48 ~~~~r~~l~~l~-~~~~----~~~v~~--~~gs~t~~~~a~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (360)
T d1bjna_          48 AEEAEKDFRDLL-NVPS----NYKVLF--CHGGGRGQFAAV-PLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDA  119 (360)
T ss_dssp             HHHHHHHHHHHH-TCCT----TEEEEE--ESSHHHHHHHHH-HHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEEC
T ss_pred             HHHHHHHHHHHh-CCCC----CCEEEE--ECCchHHHHhhh-hhcccccccccceecccchhhhhHHHHhhcCccceeec
Confidence            678899999988 4321    246777  888777666653 33345567777777554432  2334445666665555


Q ss_pred             eecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435          155 YYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS  234 (407)
Q Consensus       155 ~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~  234 (407)
                      .  +.....+.+.+++.+.  .+++++++ ...+|.||+..+..   .+  .++.+++++++|.+.+ +...+.  +   
T Consensus       120 ~--~~~~~~~~~~~~~~~~--~~~~~v~v-~~~~~~t~~~~~~~---~i--~~~~~~~~v~vDa~~~-~~~~~v--d---  183 (360)
T d1bjna_         120 K--VTVDGLRAVKPMREWQ--LSDNAAYM-HYCPNETIDGIAID---ET--PDFGADVVVAADFSST-ILSRPI--D---  183 (360)
T ss_dssp             E--EEETTEEEECCGGGCC--CCSSCSCE-EECSEETTTTEECC---CC--CCCCTTCCEEEECTTT-TTSSCC--C---
T ss_pred             c--ccCCCcchhhhhhhhc--cCCceeEE-EecccccccCcccc---ce--ecccccceeeeeeecc-ccceee--e---
Confidence            4  2233455555555554  45555555 44688888865432   22  3567789999998744 332212  1   


Q ss_pred             HHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhh--------HHHHHHHHhhhhhcccCCCChhHHHHHHHHhc
Q 015435          235 VRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV--------ASRVESQLKLVIRPMYSSPPIHGASIVATILK  306 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  306 (407)
                            ...-.+.+.|.+|.++.++. .|.+  +......        ...........  .....++......+..+..
T Consensus       184 ------~~~~dv~~~ss~k~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  252 (360)
T d1bjna_         184 ------VSRYGVIYAGAQKNIGPAGL-TIVI--VREDLLGKANIACPSILDYSILNDNG--SMFNTPPTFAWYLSGLVFK  252 (360)
T ss_dssp             ------GGGCSEEEEETTTTTSSTTC-EEEE--EEGGGCSCCCTTSCGGGCHHHHHHTT--TCSSCCCHHHHHHHHHHHH
T ss_pred             ------eccceeEEEEcccccccCCC-ceeE--eeehhhhhccccCCcchhhHHHHhhh--hhccccccchHHHHHHHHH
Confidence                  11235677788888875543 3333  2321110        00001101111  1111333333222222211


Q ss_pred             ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--ccccCCc-eeEEec-CCCHHHHHHhHhhccEEEcCC---
Q 015435          307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDW--SHIIKQI-GMFTFT-GLNSEQVAFMTKEYHIYMTSD---  379 (407)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~-~~~~~~-~~~~~~~~~~l~~~gi~~~~g---  379 (407)
                      ...    .....+...++.++...++.+.+...+.....  +-....+ .-|.+. +.+.+.+...|+++||.+..|   
T Consensus       253 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi~~~~G~~~  328 (360)
T d1bjna_         253 WLK----ANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRV  328 (360)
T ss_dssp             HHH----HTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTT
T ss_pred             HHh----hhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCcccHHHHHHHHHHCCCEeecCCCc
Confidence            110    00123344455555566666666555421000  0011112 113332 346666777788899999887   


Q ss_pred             -C--eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435          380 -G--RISMAG-LSSKTVPHLTDAIHAAVTRMG  407 (407)
Q Consensus       380 -g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~  407 (407)
                       |  |||+.. .++||++++++.|+++.+..|
T Consensus       329 ~g~~Ris~~~~~t~edV~~li~~l~e~~~~~~  360 (360)
T d1bjna_         329 VGGMRASIYNAMPLEGVKALTDFMVEFERRHG  360 (360)
T ss_dssp             TCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             cCeEEEEecCCCCHHHHHHHHHHHHHHHHHcC
Confidence             3  999865 578999999999999888765

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.14  E-value=6.5e-11  Score=108.35  Aligned_cols=286  Identities=13%  Similarity=0.031  Sum_probs=144.2

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEEE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTYR  154 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~  154 (407)
                      +.+.|+.+++++ +...    +..|++  ++|++++...+. ......+++.|++....+..  +...++..+...+.+.
T Consensus        50 ~~~~r~~l~~l~-~~~~----~~~i~~--~~gt~~~~~~~~-~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~  121 (360)
T d1w23a_          50 HEQAQNLLRELL-QIPN----DYQILF--LQGGASLQFTML-PMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAAS  121 (360)
T ss_dssp             HHHHHHHHHHHH-TCCT----TEEEEE--ESSHHHHHHHHH-HHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEE
T ss_pred             HHHHHHHHHHHh-CCCC----CCEEEE--eCCcHHHHHHHH-HhhhcccCcccceeeccchhhhhHHHHHHhhhcceeec
Confidence            567889999988 4321    235677  777776666553 33344577787777654332  2334445666666655


Q ss_pred             eecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435          155 YYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS  234 (407)
Q Consensus       155 ~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~  234 (407)
                      .  +.......+.+++...   ......+    .|-||++.+   +.+|.++|+++|+++|+|.+.+-... +.+.    
T Consensus       122 ~--~~~~~~~~~~~~~~~~---~~~~~~~----~~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs~g~~-~id~----  184 (360)
T d1w23a_         122 T--KANSYQSIPDFSEFQL---NENDAYL----HITSNNTIY---GTQYQNFPEINHAPLIADMSSDILSR-PLKV----  184 (360)
T ss_dssp             C--GGGTSCSCCCGGGCCC---CTTEEEE----EEESEETTT---TEECSSCCCCCSSCEEEECTTTTTSS-CCCG----
T ss_pred             c--ccccccchhhhhhccc---cccccee----EecCCcccc---ceeeeeccccceeeEEeecccccccc-cccc----
Confidence            4  3323344455544332   2334333    466888665   56777789999999999998653333 2221    


Q ss_pred             HHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH---------HHHHHHHhhhhhcccCCCChhHHHHHHHHh
Q 015435          235 VRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA---------SRVESQLKLVIRPMYSSPPIHGASIVATIL  305 (407)
Q Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (407)
                             .+..+.+.+++|..+++|. .|++  +.. +...         ........ . ......++..........+
T Consensus       185 -------~~~~vd~~~~~~~k~~~~~-~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~  251 (360)
T d1w23a_         185 -------NQFGMIYAGAQKNLGPSGV-TVVI--VKK-DLLNTKVEQVPTMLQYATHIK-S-DSLYNTPPTFSIYMLRNVL  251 (360)
T ss_dssp             -------GGCSEEEEETTTTTSCTTC-EEEE--EEH-HHHCSCCTTCCGGGCHHHHHH-T-TTCSSCCCHHHHHHHHHHH
T ss_pred             -------ccccceEEeeccccccCCc-ceee--Eec-hhhhcccccCCcchhhhhhhh-h-hhhcccccceeeechhHHH
Confidence                   1223555677888775553 2333  222 1100         00000000 1 1111223322222222111


Q ss_pred             cChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--cC-CceeEEec--C-CCHHHHHHhHhhccEEEcCC
Q 015435          306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI--IK-QIGMFTFT--G-LNSEQVAFMTKEYHIYMTSD  379 (407)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~-~~~~~~~~--~-~~~~~~~~~l~~~gi~~~~g  379 (407)
                      ... ...   .......++.+.+............... ....  .. ..+...|.  + ...+.+...|.++||.+..|
T Consensus       252 ~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~rS~~vvsf~i~~~~~~~~~~~~l~~~GI~~~~G  326 (360)
T d1w23a_         252 DWI-KDL---GGAEAIAKQNEEKAKIIYDTIDESNGFY-VGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNG  326 (360)
T ss_dssp             HHH-HHT---THHHHHHHHHHHHHHHHHHHHHTTTTSS-EESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBC
T ss_pred             HHH-hhh---hhhHHHHHHHHHHHHHHHHHHhhccccc-ccCCChhhcceeEEEEEcCCCccHHHHHHHHHHCCCeeeeC
Confidence            100 000   0112222333333344444433332100 1111  11 11223332  1 22344556778899999887


Q ss_pred             -----C-eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435          380 -----G-RISMAG-LSSKTVPHLTDAIHAAVTR  405 (407)
Q Consensus       380 -----g-Ris~~~-~~~e~i~~~~~~l~~~l~~  405 (407)
                           | |+|+.. .+.||++++++.+++..+.
T Consensus       327 ~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         327 HRSVGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             CTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence                 3 999754 4779999999999987653

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=3.3e-08  Score=91.01  Aligned_cols=281  Identities=12%  Similarity=0.099  Sum_probs=154.0

Q ss_pred             cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCceeeE
Q 015435           77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGLSVKT  152 (407)
Q Consensus        77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~~~~  152 (407)
                      +.++.+.+++.. +...     -+...  -.|+++..+.+. +.......++++++.-.++.+....    ...|++++.
T Consensus       110 l~e~q~~l~elt-Gmd~-----~n~s~--~~ga~a~~~~~~-~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~  180 (437)
T d1wyua1         110 TFEYQTMIAELA-GLEI-----ANASM--YDGATALAEGVL-LALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLT  180 (437)
T ss_dssp             HHHHHHHHHHHH-TSSE-----ECSCB--SSHHHHHHHHHH-HHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHhh-CCCc-----cccCc--hHHHHHHHHHHH-HHHhhhcccccccccccChHHhhhhhhhcccceeeEEe
Confidence            445566666655 5421     23444  556666666654 3334456788999988887766543    468999999


Q ss_pred             EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435          153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA  232 (407)
Q Consensus       153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~  232 (407)
                      ++..+   ++.+.++    +.  +++.++++ .+|+ -.|.+   +++++|++++++.|.+++.|..-..+..  ..   
T Consensus       181 v~~~~---~~~~~~~----~~--~~~Aavmi-~~Pn-t~G~~---ed~~~i~~~~h~~G~l~~~~ad~~al~~--l~---  241 (437)
T d1wyua1         181 LPLEG---GRTPLPE----VG--EEVGAVVV-QNPN-FLGAL---EDLGPFAEAAHGAGALFVAVADPLSLGV--LK---  241 (437)
T ss_dssp             ECCBT---TBCCCCC----CC--TTEEEEEE-ESSC-TTSBC---CCHHHHHHHHHHTTCEEEEECCTTGGGT--BC---
T ss_pred             eeccc---ccchhhh----hc--cceeEEEE-cccc-ccccc---cchHHHHHHhhhccceEEeeechhhhhc--cc---
Confidence            98732   2333333    22  45677777 5664 35764   4689999999999998887754322221  10   


Q ss_pred             HHHHHHHHcCCcEEEEEecCcccc----ccCCCcceeEEeecChhhHHHHHHH------------------------Hhh
Q 015435          233 QSVRMFVADGGECLVAQSYAKNMG----LYGERVGALSIVCKTEDVASRVESQ------------------------LKL  284 (407)
Q Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~~----~~G~r~G~~~~v~~~~~~~~~~~~~------------------------~~~  284 (407)
                       +..   +.+ ..|+.++ +|.||    ..|-..|++  .+. +++...+-.+                        .++
T Consensus       242 -~Pg---~~G-aDi~~g~-~q~fg~p~g~GGP~~G~~--a~~-~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrR  312 (437)
T d1wyua1         242 -PPG---AYG-ADIAVGD-GQSLGLPMGFGGPHFGFL--ATK-KAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR  312 (437)
T ss_dssp             -CHH---HHT-CSEEEEE-CTTTTCCCGGGCSCCEEE--EEC-GGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred             -ccc---ccc-cceEeec-cceeccccCCCcCccccc--ccc-chhhccccccccccccccCCcccceeecccccccccc
Confidence             111   112 2355555 55543    334455777  344 3322111000                        000


Q ss_pred             hhhcccCCCChhHH-HHHHHHhc-ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCcee--EEe-cC
Q 015435          285 VIRPMYSSPPIHGA-SIVATILK-DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGM--FTF-TG  359 (407)
Q Consensus       285 ~~~~~~~~~~~~~~-~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~~-~~  359 (407)
                      .......+.+.... ..+..++. .+      .+.+++..++...+..|+.+.|.+.+.   +....+...+  |.. .+
T Consensus       313 ekatsnict~q~l~a~~a~~Y~~~lG------~~GL~~ia~~a~~~A~yl~~~L~~~~g---~~~~~~~~~f~ef~v~~~  383 (437)
T d1wyua1         313 AKAKSNITTNAQLTALMGAMYLAALG------PEGLREVALKSVEMAHKLHALLLEVPG---VRPFTPKPFFNEFALALP  383 (437)
T ss_dssp             GGSSCCCCSCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHTTSTT---CEECSCSSBCSEEEEECS
T ss_pred             cccccchhhHHHHHHHHHHHHhhhcC------cccHHHHHHHHHHHHHHHHHHhhhcCC---eeccCCCCeeeEEEEECC
Confidence            01111112222222 12222222 12      155788888999999999999988742   4433322211  121 25


Q ss_pred             CCHHHHHHhHhhccEEE----cC---CC--eEEecC-CCCCChhHHHHHHHHHH
Q 015435          360 LNSEQVAFMTKEYHIYM----TS---DG--RISMAG-LSSKTVPHLTDAIHAAV  403 (407)
Q Consensus       360 ~~~~~~~~~l~~~gi~~----~~---gg--Ris~~~-~~~e~i~~~~~~l~~~l  403 (407)
                      .+.+.+.+.|.++|+..    .+   .+  .|++.. .+++++++++++|++++
T Consensus       384 ~~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         384 KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            57777766666688853    11   12  556553 35688999998888763

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.67  E-value=8.4e-07  Score=82.48  Aligned_cols=310  Identities=15%  Similarity=0.153  Sum_probs=167.1

Q ss_pred             ccchhHHHHHHHHhccccccccCCC---CCC----cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH
Q 015435           49 LVLNVVRKAEQLLVNDQSRVKEYLP---IVG----LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA  121 (407)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~y~~---~~g----~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~  121 (407)
                      .++.++..+.+.+    ...+.|.|   ++|    +.++...++++. +.+-     -|..+  -.|+|..-+.+....+
T Consensus        77 y~P~v~~~~~~~~----TaYTPYQPaEiSQG~LQalfEfQtmi~eLT-GMdv-----aNaS~--yDGatA~aeA~~ma~r  144 (471)
T d1wyub1          77 YNPKLHEEAARLF----ADLHPYQDPRTAQGALRLMWELGEYLKALT-GMDA-----ITLEP--AAGAHGELTGILIIRA  144 (471)
T ss_dssp             CCCHHHHHHHHTT----SSCCTTSCGGGCHHHHHHHHHHHHHHHHHH-TCSE-----EECCC--SSHHHHHHHHHHHHHH
T ss_pred             cCcchhhhHHHHH----hccCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCc-----ccccc--chHHHHHHHHHHHHHH
Confidence            3445555554332    34556665   444    567788888877 6431     23333  4555555555432222


Q ss_pred             hhc-CC----CeEEecCCCCCCh-HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCC
Q 015435          122 RHY-HQ----LTIYIPQPTWGNH-PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDP  195 (407)
Q Consensus       122 ~~~-~g----d~Vi~~~p~y~~~-~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~  195 (407)
                      ... .+    ..+++..+.+... .......+..++.++.  +.....+.+.+.....  .....+++ .+|++..+.  
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~a~v~v-~~p~~~g~~--  217 (471)
T d1wyub1         145 YHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPS--GPEGEVDLEALKRELG--PHVAALML-TNPNTLGLF--  217 (471)
T ss_dssp             HHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECB--CTTSSBCHHHHHHHCS--TTEEEEEE-CSSCTTSCC--
T ss_pred             HhhhcccccccccccCCcccccceeeeeecccceeecccc--cccccccchhhhhhhh--ccccceee-ccCCCcccc--
Confidence            211 22    2345555555444 4455577778877776  4456778888887665  44556666 666654443  


Q ss_pred             CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc----cccCCCcceeEEeecC
Q 015435          196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM----GLYGERVGALSIVCKT  271 (407)
Q Consensus       196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~----~~~G~r~G~~~~v~~~  271 (407)
                       .++.+.+++++++++..+++|-+....... .. .  +    ...+..++++ +.++.+    +..|..+|++  .+. 
T Consensus       218 -e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~-l~-~--p----~~~g~div~v-g~~q~~G~P~~~GGP~~G~~--a~~-  284 (471)
T d1wyub1         218 -ERRILEISRLCKEAGVQLYYDGANLNAIMG-WA-R--P----GDMGFDVVHL-NLHKTFTVPHGGGGPGSGPV--GVK-  284 (471)
T ss_dssp             -CTTHHHHHHHHHHHTCEEEEEGGGGGGTTT-TC-C--H----HHHTCSEEEC-CTTTTTCCCCTTSCCCCCCE--EEC-
T ss_pred             -cchhhhhHHHHHhccccccccccchhhhhh-cc-c--c----Cccccccccc-ccccccccccccccccccce--eeh-
Confidence             346788888899999877777653322221 10 0  1    1223334433 444544    3345567887  354 


Q ss_pred             hhhHHHHHHHHhh-------------------hhhcccCCCC-hhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 015435          272 EDVASRVESQLKL-------------------VIRPMYSSPP-IHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQ  331 (407)
Q Consensus       272 ~~~~~~~~~~~~~-------------------~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (407)
                      ++    +...+..                   +.+ ...+.+ .+...++..++.-..     .+.++++.++..++..|
T Consensus       285 ~~----~~R~~PGRiV~~~~~~~~~~~~REqhIrR-e~actnqaL~al~A~vYlsllG-----~~GL~elA~~~~~~A~Y  354 (471)
T d1wyub1         285 AH----LAPYLPVPLVERGEEGFYLDFDRPKSIGR-VRSFYGNFLALVRAWAYIRTLG-----LEGLKKAAALAVLNARY  354 (471)
T ss_dssp             GG----GGGGCCSCEEEECSSCEEEECCCTTCCCC-SSSTTSCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred             hh----hhccCCCceecCCCccccccCCCcccccc-hhhhhhhHHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHHH
Confidence            33    3222211                   111 111333 222222222222111     25688888999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCceeE---Eec---CCCHHHHHHhHhhccEEEc----C----CC-eEEecC-CCCCChhHH
Q 015435          332 LFDALSARGTPGDWSHIIKQIGMF---TFT---GLNSEQVAFMTKEYHIYMT----S----DG-RISMAG-LSSKTVPHL  395 (407)
Q Consensus       332 l~~~l~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~l~~~gi~~~----~----gg-Ris~~~-~~~e~i~~~  395 (407)
                      +.+.|+..|    ++... .+.+|   +..   +.+.+.+.+.|.++|+.-.    |    ++ -|++.. .+++||+++
T Consensus       355 la~~L~~~G----~~~~~-~~~ff~EFvv~~~~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~l  429 (471)
T d1wyub1         355 LKELLKEKG----YRVPY-DGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAF  429 (471)
T ss_dssp             HHHHHHHTT----CBCSS-CSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHH
T ss_pred             HHHHHhhcC----ceecc-CcceeeEEeecCCCCCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHH
Confidence            999998767    44322 22222   211   3455555544444777432    1    11 456654 366899999


Q ss_pred             HHHHHHHHHh
Q 015435          396 TDAIHAAVTR  405 (407)
Q Consensus       396 ~~~l~~~l~~  405 (407)
                      +++|++++++
T Consensus       430 v~aL~~i~~e  439 (471)
T d1wyub1         430 AEAMGALLKK  439 (471)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHHHh
Confidence            9999998864

>d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-N-acetylhexosaminidase
species: Streptomyces plicatus [TaxId: 1922]

Probab=84.11  E-value=1.2  Score=38.41  Aligned_cols=70  Identities=10%  Similarity=-0.061  Sum_probs=49.2

Q ss_pred             HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeee
Q 015435          140 PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF  216 (407)
Q Consensus       140 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~  216 (407)
                      .+.+.....++..+.+.|+.++.+..+..-++......+      .. ....|..++++|+++|++.|+++|+-||-
T Consensus        24 id~ma~~K~N~lh~Hl~D~~~~r~e~~~~p~l~~~ga~~------~~-~~~~~~~yT~~di~~iv~ya~~rgI~viP   93 (356)
T d1jaka1          24 IDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGST------EV-GGGPGGYYTKAEYKEIVRYAASRHLEVVP   93 (356)
T ss_dssp             HHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSC------CT-TSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHcCCeEEEEEEecCCCcceeecCCchhhhccCcc------cc-CCCCCCccCHHHHHHHHHHHHHcCCeEee
Confidence            345557788999999988877877766665554311111      11 22335579999999999999999988873

>d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-hexosaminidase A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.08  E-value=0.9  Score=39.40  Aligned_cols=65  Identities=17%  Similarity=0.162  Sum_probs=47.1

Q ss_pred             HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceee
Q 015435          140 PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPF  215 (407)
Q Consensus       140 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li  215 (407)
                      .+.+...++++..+.++|+.++.+.....-++.....           .+|.+..++++|+++|++.|+++|+-||
T Consensus        24 id~ma~~K~N~lhlHltD~~~~r~e~~~~p~l~~~ga-----------~~~~~~~yT~~d~~elv~yA~~rgI~vI   88 (362)
T d2gjxa1          24 LDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGS-----------YNPVTHIYTAQDVKEVIEYARLRGIRVL   88 (362)
T ss_dssp             HHHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHHS-----------SCTTTSCBCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHcCCcEEEEEEEcCCCceeccCCCchhhhcCC-----------cCCCCCccCHHHHHHHHHHHHHcCCEEE
Confidence            3445577889999999877777776554433322101           2456778999999999999999998888